ATY44_RS00005	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
ATY44_RS00010	SM00480	DNA polymerase III beta subunit
ATY44_RS00020	SM00387	Histidine kinase-like ATPases
ATY44_RS00020	SM00433	TopoisomeraseII
ATY44_RS00035	SM00028	Tetratricopeptide repeats
ATY44_RS00070	SM00155	Phospholipase D. Active site motifs.
ATY44_RS00200	SM01126	ATY44_RS00200
ATY44_RS00285	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY44_RS00310	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY44_RS00420	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS00515	SM00267	diguanylate cyclase
ATY44_RS00525	SM00642	Alpha-amylase domain
ATY44_RS00530	SM00642	Alpha-amylase domain
ATY44_RS00540	SM00642	Alpha-amylase domain
ATY44_RS00550	SM00642	Alpha-amylase domain
ATY44_RS00590	SM01126	ATY44_RS00590
ATY44_RS00635	SM00487	DEAD-like helicases superfamily
ATY44_RS00635	SM00490	helicase superfamily c-terminal domain
ATY44_RS00660	SM01126	ATY44_RS00660
ATY44_RS00715	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS00735	SM01126	ATY44_RS00735
ATY44_RS00760	SM00487	DEAD-like helicases superfamily
ATY44_RS00760	SM00490	helicase superfamily c-terminal domain
ATY44_RS00835	SM01126	ATY44_RS00835
ATY44_RS00870	SM00354	helix_turn _helix lactose operon repressor
ATY44_RS00890	SM00642	Alpha-amylase domain
ATY44_RS00895	SM00642	Alpha-amylase domain
ATY44_RS00900	SM00642	Alpha-amylase domain
ATY44_RS00915	SM01126	ATY44_RS00915
ATY44_RS00945	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS00955	SM00938	Nitrogen regulatory protein P-II
ATY44_RS00970	SM01126	ATY44_RS00970
ATY44_RS01025	SM01228	ATY44_RS01025
ATY44_RS01090	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY44_RS01090	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS01125	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATY44_RS01145	SM00354	helix_turn _helix lactose operon repressor
ATY44_RS01155	SM00563	Phosphate acyltransferases
ATY44_RS01160	SM00829	Enoylreductase
ATY44_RS01240	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS01255	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS01285	SM00530	Helix-turn-helix XRE-family like proteins 
ATY44_RS01310	SM00855	Phosphoglycerate mutase family
ATY44_RS01315	SM00867	YceI-like domain 
ATY44_RS01320	SM00155	Phospholipase D. Active site motifs.
ATY44_RS01330	SM00563	Phosphate acyltransferases
ATY44_RS01345	SM00028	Tetratricopeptide repeats
ATY44_RS01370	SM01230	ATY44_RS01370
ATY44_RS01375	SM00938	Nitrogen regulatory protein P-II
ATY44_RS01385	SM00387	Histidine kinase-like ATPases
ATY44_RS01385	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS01390	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS01390	SM00448	cheY-homologous receiver domain
ATY44_RS01410	SM01126	ATY44_RS01410
ATY44_RS01480	SM00530	Helix-turn-helix XRE-family like proteins 
ATY44_RS01530	SM00530	Helix-turn-helix XRE-family like proteins 
ATY44_RS01555	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY44_RS01605	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS01670	SM00633	Glycosyl hydrolase family 10
ATY44_RS01675	SM00633	Glycosyl hydrolase family 10
ATY44_RS01705	SM00758	ATY44_RS01705
ATY44_RS01705	SM01217	ATY44_RS01705
ATY44_RS01715	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY44_RS01730	SM00354	helix_turn _helix lactose operon repressor
ATY44_RS01815	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS01825	SM00836	DALR anticodon binding domain
ATY44_RS01870	SM00833	Cobalamin synthesis protein cobW C-terminal domain
ATY44_RS01940	SM00878	Biotin carboxylase C-terminal domain
ATY44_RS02030	SM01126	ATY44_RS02030
ATY44_RS02120	SM00448	cheY-homologous receiver domain
ATY44_RS02120	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS02125	SM00387	Histidine kinase-like ATPases
ATY44_RS02130	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS02260	SM00563	Phosphate acyltransferases
ATY44_RS02330	SM00357	Cold shock protein domain
ATY44_RS02330	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS02330	SM00959	Rho termination factor, N-terminal domain
ATY44_RS02340	SM00487	DEAD-like helicases superfamily
ATY44_RS02340	SM00490	helicase superfamily c-terminal domain
ATY44_RS02345	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS02355	SM00448	cheY-homologous receiver domain
ATY44_RS02360	SM00986	Uracil DNA glycosylase superfamily
ATY44_RS02360	SM00987	UreE urease accessory protein, C-terminal domain 
ATY44_RS02400	SM00883	Chaperonin 10 Kd subunit
ATY44_RS02450	SM01126	ATY44_RS02450
ATY44_RS02490	SM00944	Pro-kumamolisin, activation domain
ATY44_RS02520	SM00867	YceI-like domain 
ATY44_RS02535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS02535	SM00331	Sigma factor PP2C-like phosphatases
ATY44_RS02610	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY44_RS02645	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY44_RS02645	SM00474	3'-5' exonuclease
ATY44_RS02645	SM00475	5'-3' exonuclease
ATY44_RS02645	SM00482	DNA polymerase A domain
ATY44_RS02705	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY44_RS02715	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY44_RS02800	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS02800	SM00448	cheY-homologous receiver domain
ATY44_RS02805	SM00387	Histidine kinase-like ATPases
ATY44_RS02805	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS02830	SM00450	Rhodanese Homology Domain
ATY44_RS02845	SM01126	ATY44_RS02845
ATY44_RS02855	SM01150	ATY44_RS02855
ATY44_RS02915	SM01126	ATY44_RS02915
ATY44_RS02930	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS02990	SM00400	zinc finger
ATY44_RS02990	SM00493	ATY44_RS02990
ATY44_RS02990	SM00766	DNA primase DnaG DnaB-binding
ATY44_RS03030	SM00905	Dihydroneopterin aldolase
ATY44_RS03035	SM01217	ATY44_RS03035
ATY44_RS03045	SM01126	ATY44_RS03045
ATY44_RS03065	SM01126	ATY44_RS03065
ATY44_RS03075	SM01126	ATY44_RS03075
ATY44_RS03140	SM01126	ATY44_RS03140
ATY44_RS03160	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY44_RS03170	SM00644	ATY44_RS03170
ATY44_RS03285	SM01126	ATY44_RS03285
ATY44_RS03290	SM00861	Transketolase, pyrimidine binding domain
ATY44_RS03315	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY44_RS03400	SM00271	DnaJ molecular chaperone homology domain
ATY44_RS03415	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATY44_RS03525	SM00060	Fibronectin type 3 domain
ATY44_RS03595	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY44_RS03605	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY44_RS03605	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY44_RS03605	SM00091	PAS domain
ATY44_RS03605	SM00267	diguanylate cyclase
ATY44_RS03625	SM00637	ATY44_RS03625
ATY44_RS03640	SM00267	diguanylate cyclase
ATY44_RS03685	SM00448	cheY-homologous receiver domain
ATY44_RS03685	SM00850	LytTr DNA-binding domain
ATY44_RS03775	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS03775	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY44_RS03790	SM01263	ATY44_RS03790
ATY44_RS03795	SM00267	diguanylate cyclase
ATY44_RS03860	SM00268	Actin
ATY44_RS03950	SM00936	Penicillin-binding protein 5, C-terminal domain 
ATY44_RS03970	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY44_RS03975	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY44_RS03975	SM00245	tail specific protease
ATY44_RS04025	SM01350	ATY44_RS04025
ATY44_RS04035	SM00749	bacterial OsmY and nodulation domain
ATY44_RS04040	SM00387	Histidine kinase-like ATPases
ATY44_RS04040	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS04045	SM00448	cheY-homologous receiver domain
ATY44_RS04050	SM00387	Histidine kinase-like ATPases
ATY44_RS04050	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS04050	SM00448	cheY-homologous receiver domain
ATY44_RS04110	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY44_RS04110	SM00866	ATY44_RS04110
ATY44_RS04120	SM00354	helix_turn _helix lactose operon repressor
ATY44_RS04160	SM01126	ATY44_RS04160
ATY44_RS04190	SM01126	ATY44_RS04190
ATY44_RS04340	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS04340	SM00387	Histidine kinase-like ATPases
ATY44_RS04340	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS04345	SM00448	cheY-homologous receiver domain
ATY44_RS04345	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS04365	SM00829	Enoylreductase
ATY44_RS04395	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS04505	SM00387	Histidine kinase-like ATPases
ATY44_RS04505	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS04510	SM00448	cheY-homologous receiver domain
ATY44_RS04510	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS04615	SM00842	Cell division protein FtsA
ATY44_RS04620	SM00864	Tubulin/FtsZ family, GTPase domain
ATY44_RS04620	SM00865	Tubulin/FtsZ family, C-terminal domain
ATY44_RS04640	SM00957	SecA DEAD-like domain
ATY44_RS04640	SM00958	SecA preprotein cross-linking domain
ATY44_RS04680	SM00829	Enoylreductase
ATY44_RS04740	SM00996	S-adenosyl-L-homocysteine hydrolase
ATY44_RS04740	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ATY44_RS04875	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS04895	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS04905	SM00448	cheY-homologous receiver domain
ATY44_RS04905	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS04910	SM00387	Histidine kinase-like ATPases
ATY44_RS04910	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS04975	SM00650	Ribosomal RNA adenine dimethylases
ATY44_RS05035	SM01126	ATY44_RS05035
ATY44_RS05080	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY44_RS05185	SM00448	cheY-homologous receiver domain
ATY44_RS05190	SM00387	Histidine kinase-like ATPases
ATY44_RS05190	SM00448	cheY-homologous receiver domain
ATY44_RS05205	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS05210	SM00421	helix_turn_helix, Lux Regulon
ATY44_RS05245	SM01126	ATY44_RS05245
ATY44_RS05315	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY44_RS05315	SM00475	5'-3' exonuclease
ATY44_RS05330	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATY44_RS05330	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATY44_RS05455	SM00852	Probable molybdopterin binding domain
ATY44_RS05460	SM00028	Tetratricopeptide repeats
ATY44_RS05465	SM00937	ATY44_RS05465
ATY44_RS05475	SM00028	Tetratricopeptide repeats
ATY44_RS05495	SM01400	ATY44_RS05495
ATY44_RS05545	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ATY44_RS05545	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY44_RS05550	SM00649	Ribosomal protein L11/L12
ATY44_RS05575	SM00663	RNA polymerase I subunit A N-terminus
ATY44_RS05590	SM00838	Elongation factor G C-terminus
ATY44_RS05590	SM00889	Elongation factor G, domain IV
ATY44_RS05605	SM01403	ATY44_RS05605
ATY44_RS05625	SM01382	ATY44_RS05625
ATY44_RS05625	SM01383	ATY44_RS05625
ATY44_RS05640	SM00322	K homology RNA-binding domain
ATY44_RS05660	SM01374	ATY44_RS05660
ATY44_RS05665	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY44_RS05725	SM00363	S4 RNA-binding domain
ATY44_RS05725	SM01390	ATY44_RS05725
ATY44_RS05730	SM00662	RNA polymerases D
ATY44_RS05785	SM00990	ATY44_RS05785
ATY44_RS05815	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS05850	SM00448	cheY-homologous receiver domain
ATY44_RS05850	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS05855	SM00387	Histidine kinase-like ATPases
ATY44_RS05855	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS05900	SM00421	helix_turn_helix, Lux Regulon
ATY44_RS05900	SM00448	cheY-homologous receiver domain
ATY44_RS05915	SM00478	endonuclease III
ATY44_RS06255	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS06255	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY44_RS06320	SM00487	DEAD-like helicases superfamily
ATY44_RS06320	SM00490	helicase superfamily c-terminal domain
ATY44_RS06355	SM00487	DEAD-like helicases superfamily
ATY44_RS06430	SM00966	SpoVT / AbrB like domain 
ATY44_RS06450	SM00481	DNA polymerase alpha chain like domain
ATY44_RS06455	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY44_RS06515	SM00091	PAS domain
ATY44_RS06515	SM00342	helix_turn_helix, arabinose operon control protein
ATY44_RS06540	SM01060	ATY44_RS06540
ATY44_RS06600	SM00506	Appr-1"-p processing enzyme
ATY44_RS06650	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY44_RS06650	SM00387	Histidine kinase-like ATPases
ATY44_RS06715	SM01126	ATY44_RS06715
ATY44_RS06735	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY44_RS06835	SM00869	Autotransporter beta-domain
ATY44_RS06845	SM01126	ATY44_RS06845
ATY44_RS06880	SM00528	Domain in histone-like proteins of HNS family
ATY44_RS06915	SM01126	ATY44_RS06915
ATY44_RS06920	SM01126	ATY44_RS06920
ATY44_RS06930	SM00642	Alpha-amylase domain
ATY44_RS06945	SM01126	ATY44_RS06945
ATY44_RS07000	SM01126	ATY44_RS07000
ATY44_RS07115	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY44_RS07170	SM00977	TilS substrate C-terminal domain
ATY44_RS07175	SM00098	Alkaline phosphatase homologues
ATY44_RS07225	SM01126	ATY44_RS07225
ATY44_RS07235	SM01160	ATY44_RS07235
ATY44_RS07275	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY44_RS07310	SM00257	Lysin motif
ATY44_RS07345	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY44_RS07415	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS07415	SM00267	diguanylate cyclase
ATY44_RS07415	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS07495	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
ATY44_RS07500	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
ATY44_RS07550	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY44_RS07550	SM00322	K homology RNA-binding domain
ATY44_RS07570	SM01387	ATY44_RS07570
ATY44_RS07575	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY44_RS07575	SM00322	K homology RNA-binding domain
ATY44_RS07595	SM01001	AIR carboxylase
ATY44_RS07685	SM00487	DEAD-like helicases superfamily
ATY44_RS07685	SM00490	helicase superfamily c-terminal domain
ATY44_RS07720	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY44_RS07745	SM00873	B3/4 domain
ATY44_RS07745	SM00874	tRNA synthetase B5 domain
ATY44_RS07745	SM00896	Ferredoxin-fold anticodon binding domain
ATY44_RS07750	SM00411	bacterial (prokaryotic) histone like domain
ATY44_RS07755	SM00422	helix_turn_helix, mercury resistance
ATY44_RS07950	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY44_RS07950	SM00091	PAS domain
ATY44_RS07950	SM00387	Histidine kinase-like ATPases
ATY44_RS07950	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS07960	SM00448	cheY-homologous receiver domain
ATY44_RS07970	SM00478	endonuclease III
ATY44_RS07985	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS07985	SM00962	SRP54-type protein, GTPase domain
ATY44_RS07985	SM00963	SRP54-type protein, helical bundle domain
ATY44_RS07990	SM00342	helix_turn_helix, arabinose operon control protein
ATY44_RS08015	SM01130	ATY44_RS08015
ATY44_RS08080	SM00944	Pro-kumamolisin, activation domain
ATY44_RS08145	SM01126	ATY44_RS08145
ATY44_RS08165	SM00852	Probable molybdopterin binding domain
ATY44_RS08205	SM01012	ATY44_RS08205
ATY44_RS08215	SM01126	ATY44_RS08215
ATY44_RS08225	SM01126	ATY44_RS08225
ATY44_RS08265	SM00984	UDP binding domain
ATY44_RS08285	SM00450	Rhodanese Homology Domain
ATY44_RS08290	SM00421	helix_turn_helix, Lux Regulon
ATY44_RS08290	SM00448	cheY-homologous receiver domain
ATY44_RS08305	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY44_RS08310	SM00363	S4 RNA-binding domain
ATY44_RS08455	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS08455	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY44_RS08490	SM00240	Forkhead associated domain
ATY44_RS08515	SM00331	Sigma factor PP2C-like phosphatases
ATY44_RS08515	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY44_RS08545	SM00387	Histidine kinase-like ATPases
ATY44_RS08555	SM00448	cheY-homologous receiver domain
ATY44_RS08555	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS08595	SM00060	Fibronectin type 3 domain
ATY44_RS08790	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY44_RS08800	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS08835	SM01091	Transporter associated domain
ATY44_RS08870	SM00387	Histidine kinase-like ATPases
ATY44_RS08870	SM00433	TopoisomeraseII
ATY44_RS08895	SM01192	ATY44_RS08895
ATY44_RS08895	SM01193	ATY44_RS08895
ATY44_RS08925	SM00463	Small MutS-related domain
ATY44_RS08945	SM00257	Lysin motif
ATY44_RS08955	SM01103	ATY44_RS08955
ATY44_RS08965	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS09005	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS09015	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY44_RS09110	SM00670	Large family of predicted nucleotide-binding domains
ATY44_RS09130	SM01130	ATY44_RS09130
ATY44_RS09155	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY44_RS09175	SM00758	ATY44_RS09175
ATY44_RS09220	SM00841	Elongation factor P, C-terminal
ATY44_RS09220	SM01185	ATY44_RS09220
ATY44_RS09225	SM00822	ATY44_RS09225
ATY44_RS09245	SM00899	ATY44_RS09245
ATY44_RS09295	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ATY44_RS09305	SM00851	MGS-like domain
ATY44_RS09305	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATY44_RS09355	SM00850	LytTr DNA-binding domain
ATY44_RS09360	SM00937	ATY44_RS09360
ATY44_RS09370	SM00448	cheY-homologous receiver domain
ATY44_RS09370	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY44_RS09380	SM00073	Histidine Phosphotransfer domain
ATY44_RS09380	SM00387	Histidine kinase-like ATPases
ATY44_RS09380	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS09380	SM00448	cheY-homologous receiver domain
ATY44_RS09405	SM00966	SpoVT / AbrB like domain 
ATY44_RS09430	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS09430	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY44_RS09430	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY44_RS09430	SM00091	PAS domain
ATY44_RS09430	SM00267	diguanylate cyclase
ATY44_RS09435	SM00448	cheY-homologous receiver domain
ATY44_RS09445	SM00138	Methyltransferase, chemotaxis proteins 
ATY44_RS09450	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY44_RS09450	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS09470	SM00260	Two component signalling adaptor domain
ATY44_RS09485	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY44_RS09485	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS09490	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY44_RS09490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS09495	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY44_RS09495	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS09500	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY44_RS09500	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS09510	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY44_RS09510	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS09515	SM01126	ATY44_RS09515
ATY44_RS09530	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY44_RS09555	SM00073	Histidine Phosphotransfer domain
ATY44_RS09555	SM00260	Two component signalling adaptor domain
ATY44_RS09555	SM00387	Histidine kinase-like ATPases
ATY44_RS09555	SM01231	ATY44_RS09555
ATY44_RS09560	SM00448	cheY-homologous receiver domain
ATY44_RS09570	SM00260	Two component signalling adaptor domain
ATY44_RS09705	SM00354	helix_turn _helix lactose operon repressor
ATY44_RS09715	SM01126	ATY44_RS09715
ATY44_RS09750	SM00448	cheY-homologous receiver domain
ATY44_RS09750	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY44_RS09755	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY44_RS09755	SM00091	PAS domain
ATY44_RS09755	SM00387	Histidine kinase-like ATPases
ATY44_RS09755	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS09755	SM00448	cheY-homologous receiver domain
ATY44_RS09755	SM01079	ATY44_RS09755
ATY44_RS09810	SM00267	diguanylate cyclase
ATY44_RS09810	SM00448	cheY-homologous receiver domain
ATY44_RS09820	SM01230	ATY44_RS09820
ATY44_RS09830	SM01230	ATY44_RS09830
ATY44_RS09855	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS09890	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY44_RS09890	SM01091	Transporter associated domain
ATY44_RS09915	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY44_RS09990	SM01126	ATY44_RS09990
ATY44_RS10035	SM00528	Domain in histone-like proteins of HNS family
ATY44_RS10050	SM00474	3'-5' exonuclease
ATY44_RS10095	SM00646	ATY44_RS10095
ATY44_RS10100	SM00853	MutL C terminal dimerisation domain
ATY44_RS10100	SM01340	ATY44_RS10100
ATY44_RS10120	SM00822	ATY44_RS10120
ATY44_RS10135	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS10135	SM00267	diguanylate cyclase
ATY44_RS10145	SM01322	ATY44_RS10145
ATY44_RS10155	SM00357	Cold shock protein domain
ATY44_RS10180	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS10180	SM00487	DEAD-like helicases superfamily
ATY44_RS10180	SM00490	helicase superfamily c-terminal domain
ATY44_RS10185	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS10230	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS10230	SM00267	diguanylate cyclase
ATY44_RS10230	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS10240	SM00841	Elongation factor P, C-terminal
ATY44_RS10240	SM01185	ATY44_RS10240
ATY44_RS10340	SM01234	ATY44_RS10340
ATY44_RS10355	SM00245	tail specific protease
ATY44_RS10370	SM00840	ATY44_RS10370
ATY44_RS10410	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY44_RS10430	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ATY44_RS10440	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
ATY44_RS10475	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS10480	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS10490	SM01126	ATY44_RS10490
ATY44_RS10630	SM00073	Histidine Phosphotransfer domain
ATY44_RS10630	SM00260	Two component signalling adaptor domain
ATY44_RS10630	SM00387	Histidine kinase-like ATPases
ATY44_RS10630	SM01231	ATY44_RS10630
ATY44_RS10640	SM00448	cheY-homologous receiver domain
ATY44_RS10655	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS10655	SM00962	SRP54-type protein, GTPase domain
ATY44_RS10670	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS10670	SM00267	diguanylate cyclase
ATY44_RS10675	SM00267	diguanylate cyclase
ATY44_RS10680	SM00267	diguanylate cyclase
ATY44_RS10730	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS10785	SM00822	ATY44_RS10785
ATY44_RS10790	SM00822	ATY44_RS10790
ATY44_RS10810	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS10815	SM00448	cheY-homologous receiver domain
ATY44_RS10825	SM00421	helix_turn_helix, Lux Regulon
ATY44_RS10825	SM00448	cheY-homologous receiver domain
ATY44_RS10865	SM00047	Lysozyme subfamily 2
ATY44_RS10910	SM00260	Two component signalling adaptor domain
ATY44_RS10910	SM00448	cheY-homologous receiver domain
ATY44_RS10915	SM00858	ATY44_RS10915
ATY44_RS10930	SM00387	Histidine kinase-like ATPases
ATY44_RS10935	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS10935	SM00267	diguanylate cyclase
ATY44_RS10935	SM00448	cheY-homologous receiver domain
ATY44_RS10940	SM00091	PAS domain
ATY44_RS10940	SM00387	Histidine kinase-like ATPases
ATY44_RS10945	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS10945	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY44_RS10945	SM00091	PAS domain
ATY44_RS10945	SM00267	diguanylate cyclase
ATY44_RS10960	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY44_RS10985	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS10985	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY44_RS10990	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY44_RS11020	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS11020	SM00843	ATY44_RS11020
ATY44_RS11040	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS11080	SM00562	ATY44_RS11080
ATY44_RS11090	SM00028	Tetratricopeptide repeats
ATY44_RS11105	SM00564	beta-propeller repeat
ATY44_RS11110	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS11115	SM00852	Probable molybdopterin binding domain
ATY44_RS11185	SM01126	ATY44_RS11185
ATY44_RS11195	SM00450	Rhodanese Homology Domain
ATY44_RS11240	SM01007	Class II Aldolase and Adducin N-terminal domain
ATY44_RS11325	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS11355	SM00363	S4 RNA-binding domain
ATY44_RS11380	SM00354	helix_turn _helix lactose operon repressor
ATY44_RS11460	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY44_RS11465	SM00411	bacterial (prokaryotic) histone like domain
ATY44_RS11485	SM00822	ATY44_RS11485
ATY44_RS11535	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY44_RS11535	SM01240	ATY44_RS11535
ATY44_RS11600	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS11610	SM00529	Helix-turn-helix diphteria tox regulatory element
ATY44_RS11620	SM00479	ATY44_RS11620
ATY44_RS11690	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY44_RS11690	SM00732	Likely ribonuclease with RNase H fold.
ATY44_RS11705	SM00448	cheY-homologous receiver domain
ATY44_RS11710	SM00387	Histidine kinase-like ATPases
ATY44_RS11720	SM00014	Acid phosphatase homologues
ATY44_RS11815	SM00419	helix_turn_helix, cAMP Regulatory protein
ATY44_RS11925	SM01126	ATY44_RS11925
ATY44_RS12045	SM01126	ATY44_RS12045
ATY44_RS12090	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY44_RS12090	SM00465	GIY-YIG type nucleases (URI domain)
ATY44_RS12100	SM00226	Low molecular weight phosphatase family
ATY44_RS12115	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS12130	SM00849	Metallo-beta-lactamase superfamily
ATY44_RS12135	SM01126	ATY44_RS12135
ATY44_RS12145	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS12200	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS12260	SM00448	cheY-homologous receiver domain
ATY44_RS12265	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY44_RS12265	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY44_RS12265	SM00091	PAS domain
ATY44_RS12265	SM00387	Histidine kinase-like ATPases
ATY44_RS12265	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS12265	SM00448	cheY-homologous receiver domain
ATY44_RS12285	SM00450	Rhodanese Homology Domain
ATY44_RS12305	SM00226	Low molecular weight phosphatase family
ATY44_RS12310	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATY44_RS12345	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS12400	SM00267	diguanylate cyclase
ATY44_RS12450	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS12495	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY44_RS12525	SM00631	ATY44_RS12525
ATY44_RS12530	SM01217	ATY44_RS12530
ATY44_RS12545	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS12545	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY44_RS12545	SM00267	diguanylate cyclase
ATY44_RS12620	SM00646	ATY44_RS12620
ATY44_RS12640	SM00869	Autotransporter beta-domain
ATY44_RS12660	SM00387	Histidine kinase-like ATPases
ATY44_RS12660	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS12665	SM00421	helix_turn_helix, Lux Regulon
ATY44_RS12665	SM00448	cheY-homologous receiver domain
ATY44_RS12670	SM00869	Autotransporter beta-domain
ATY44_RS12695	SM00830	Chorismate mutase type II
ATY44_RS12720	SM00240	Forkhead associated domain
ATY44_RS12740	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY44_RS12740	SM00866	ATY44_RS12740
ATY44_RS12790	SM00434	DNA Topoisomerase IV
ATY44_RS12815	SM00292	breast cancer carboxy-terminal domain
ATY44_RS12815	SM00532	Ligase N family
ATY44_RS12825	SM00771	ZipA, C-terminal domain (FtsZ-binding)
ATY44_RS12830	SM00968	SMC proteins Flexible Hinge Domain
ATY44_RS12885	SM00947	Carbonic anhydrase
ATY44_RS12910	SM00479	ATY44_RS12910
ATY44_RS12945	SM00981	ATY44_RS12945
ATY44_RS12970	SM00644	ATY44_RS12970
ATY44_RS12980	SM00450	Rhodanese Homology Domain
ATY44_RS13005	SM00478	endonuclease III
ATY44_RS13015	SM00947	Carbonic anhydrase
ATY44_RS13060	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS13075	SM00479	ATY44_RS13075
ATY44_RS13135	SM01323	ATY44_RS13135
ATY44_RS13150	SM00344	helix_turn_helix ASNC type
ATY44_RS13350	SM00387	Histidine kinase-like ATPases
ATY44_RS13480	SM01126	ATY44_RS13480
ATY44_RS13530	SM01126	ATY44_RS13530
ATY44_RS13585	SM01323	ATY44_RS13585
ATY44_RS13630	SM01126	ATY44_RS13630
ATY44_RS13675	SM01126	ATY44_RS13675
ATY44_RS13705	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY44_RS13720	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY44_RS13720	SM00357	Cold shock protein domain
ATY44_RS13720	SM00955	ATY44_RS13720
ATY44_RS13750	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATY44_RS13760	SM01018	B12 binding domain
ATY44_RS13780	SM00354	helix_turn _helix lactose operon repressor
ATY44_RS13800	SM00984	UDP binding domain
ATY44_RS13815	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY44_RS13820	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS13915	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY44_RS13925	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY44_RS13935	SM00861	Transketolase, pyrimidine binding domain
ATY44_RS13960	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS13995	SM00271	DnaJ molecular chaperone homology domain
ATY44_RS14065	SM00507	HNH nucleases
ATY44_RS14070	SM00861	Transketolase, pyrimidine binding domain
ATY44_RS14095	SM01126	ATY44_RS14095
ATY44_RS14140	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY44_RS14145	SM00342	helix_turn_helix, arabinose operon control protein
ATY44_RS14150	SM00434	DNA Topoisomerase IV
ATY44_RS14185	SM00710	Parallel beta-helix repeats
ATY44_RS14185	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
ATY44_RS14190	SM01172	ATY44_RS14190
ATY44_RS14220	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY44_RS14230	SM00972	Spore Coat Protein U domain
ATY44_RS14245	SM00972	Spore Coat Protein U domain
ATY44_RS14300	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY44_RS14335	SM00481	DNA polymerase alpha chain like domain
ATY44_RS14355	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS14725	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATY44_RS14730	SM00869	Autotransporter beta-domain
ATY44_RS14750	SM00267	diguanylate cyclase
ATY44_RS14780	SM00487	DEAD-like helicases superfamily
ATY44_RS14780	SM00490	helicase superfamily c-terminal domain
ATY44_RS14805	SM00357	Cold shock protein domain
ATY44_RS14860	SM01118	ATY44_RS14860
ATY44_RS14870	SM00448	cheY-homologous receiver domain
ATY44_RS14885	SM00358	Double-stranded RNA binding motif
ATY44_RS14885	SM00535	Ribonuclease III family
ATY44_RS14900	SM00838	Elongation factor G C-terminus
ATY44_RS14905	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY44_RS14955	SM00530	Helix-turn-helix XRE-family like proteins 
ATY44_RS14980	SM00812	Alpha-L-fucosidase
ATY44_RS15010	SM00387	Histidine kinase-like ATPases
ATY44_RS15010	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS15010	SM00448	cheY-homologous receiver domain
ATY44_RS15015	SM00387	Histidine kinase-like ATPases
ATY44_RS15015	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS15015	SM00448	cheY-homologous receiver domain
ATY44_RS15020	SM00387	Histidine kinase-like ATPases
ATY44_RS15020	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS15020	SM00448	cheY-homologous receiver domain
ATY44_RS15025	SM00867	YceI-like domain 
ATY44_RS15035	SM00867	YceI-like domain 
ATY44_RS15090	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY44_RS15170	SM00244	prohibitin homologues
ATY44_RS15220	SM00812	Alpha-L-fucosidase
ATY44_RS15225	SM00636	ATY44_RS15225
ATY44_RS15245	SM00758	ATY44_RS15245
ATY44_RS15245	SM01217	ATY44_RS15245
ATY44_RS15250	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS15295	SM01149	ATY44_RS15295
ATY44_RS15340	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY44_RS15355	SM01126	ATY44_RS15355
ATY44_RS15360	SM00327	von Willebrand factor (vWF) type A domain
ATY44_RS15395	SM00073	Histidine Phosphotransfer domain
ATY44_RS15395	SM00260	Two component signalling adaptor domain
ATY44_RS15395	SM00387	Histidine kinase-like ATPases
ATY44_RS15395	SM00448	cheY-homologous receiver domain
ATY44_RS15395	SM01231	ATY44_RS15395
ATY44_RS15400	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY44_RS15405	SM00260	Two component signalling adaptor domain
ATY44_RS15410	SM00448	cheY-homologous receiver domain
ATY44_RS15415	SM00448	cheY-homologous receiver domain
ATY44_RS15440	SM00491	ATY44_RS15440
ATY44_RS15465	SM00954	Region found in RelA / SpoT proteins
ATY44_RS15520	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS15520	SM00487	DEAD-like helicases superfamily
ATY44_RS15520	SM00490	helicase superfamily c-terminal domain
ATY44_RS15520	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY44_RS15530	SM00341	Helicase and RNase D C-terminal
ATY44_RS15530	SM00487	DEAD-like helicases superfamily
ATY44_RS15530	SM00490	helicase superfamily c-terminal domain
ATY44_RS15530	SM00956	ATY44_RS15530
ATY44_RS15540	SM00448	cheY-homologous receiver domain
ATY44_RS15620	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS15630	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY44_RS15665	SM00834	Putative regulatory protein
ATY44_RS15705	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS15735	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ATY44_RS15735	SM00534	ATPase domain of DNA mismatch repair MUTS family
ATY44_RS15865	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY44_RS15910	SM00904	Riboflavin kinase
ATY44_RS16075	SM00881	CoA binding domain
ATY44_RS16085	SM00387	Histidine kinase-like ATPases
ATY44_RS16085	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS16090	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS16090	SM00448	cheY-homologous receiver domain
ATY44_RS16190	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS16220	SM00448	cheY-homologous receiver domain
ATY44_RS16220	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS16225	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS16225	SM00387	Histidine kinase-like ATPases
ATY44_RS16225	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS16260	SM00363	S4 RNA-binding domain
ATY44_RS16265	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS16265	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY44_RS16265	SM00091	PAS domain
ATY44_RS16265	SM00267	diguanylate cyclase
ATY44_RS16270	SM00487	DEAD-like helicases superfamily
ATY44_RS16270	SM00490	helicase superfamily c-terminal domain
ATY44_RS16335	SM00829	Enoylreductase
ATY44_RS16465	SM00357	Cold shock protein domain
ATY44_RS16520	SM00645	Papain family cysteine protease
ATY44_RS16545	SM00645	Papain family cysteine protease
ATY44_RS16565	SM00645	Papain family cysteine protease
ATY44_RS16580	SM00387	Histidine kinase-like ATPases
ATY44_RS16580	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS16600	SM00487	DEAD-like helicases superfamily
ATY44_RS16600	SM00490	helicase superfamily c-terminal domain
ATY44_RS16600	SM00982	ATY44_RS16600
ATY44_RS16600	SM01058	CarD-like/TRCF domain
ATY44_RS16610	SM00073	Histidine Phosphotransfer domain
ATY44_RS16610	SM00260	Two component signalling adaptor domain
ATY44_RS16610	SM00387	Histidine kinase-like ATPases
ATY44_RS16610	SM01231	ATY44_RS16610
ATY44_RS16615	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY44_RS16615	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY44_RS16620	SM00260	Two component signalling adaptor domain
ATY44_RS16625	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS16625	SM00448	cheY-homologous receiver domain
ATY44_RS16630	SM00138	Methyltransferase, chemotaxis proteins 
ATY44_RS16635	SM00448	cheY-homologous receiver domain
ATY44_RS16660	SM00855	Phosphoglycerate mutase family
ATY44_RS16795	SM01126	ATY44_RS16795
ATY44_RS16810	SM00829	Enoylreductase
ATY44_RS16815	SM00267	diguanylate cyclase
ATY44_RS16905	SM00732	Likely ribonuclease with RNase H fold.
ATY44_RS16945	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS16965	SM00411	bacterial (prokaryotic) histone like domain
ATY44_RS17005	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
ATY44_RS17020	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS17060	SM01126	ATY44_RS17060
ATY44_RS17130	SM00342	helix_turn_helix, arabinose operon control protein
ATY44_RS17135	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS17175	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS17275	SM00855	Phosphoglycerate mutase family
ATY44_RS17350	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS17350	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY44_RS17390	SM00363	S4 RNA-binding domain
ATY44_RS17445	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS17445	SM00962	SRP54-type protein, GTPase domain
ATY44_RS17445	SM00963	SRP54-type protein, helical bundle domain
ATY44_RS17450	SM01126	ATY44_RS17450
ATY44_RS17465	SM00813	Alpha-L-arabinofuranosidase C-terminus
ATY44_RS17480	SM01126	ATY44_RS17480
ATY44_RS17600	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY44_RS17620	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS17665	SM00924	MgtE intracellular N domain
ATY44_RS17705	SM00421	helix_turn_helix, Lux Regulon
ATY44_RS17730	SM00849	Metallo-beta-lactamase superfamily
ATY44_RS17740	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY44_RS17765	SM00422	helix_turn_helix, mercury resistance
ATY44_RS18060	SM00448	cheY-homologous receiver domain
ATY44_RS18060	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS18065	SM00387	Histidine kinase-like ATPases
ATY44_RS18065	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS18070	SM01126	ATY44_RS18070
ATY44_RS18085	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATY44_RS18130	SM00849	Metallo-beta-lactamase superfamily
ATY44_RS18145	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS18165	SM00387	Histidine kinase-like ATPases
ATY44_RS18165	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS18170	SM00448	cheY-homologous receiver domain
ATY44_RS18170	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS18230	SM00861	Transketolase, pyrimidine binding domain
ATY44_RS18255	SM00028	Tetratricopeptide repeats
ATY44_RS18255	SM00327	von Willebrand factor (vWF) type A domain
ATY44_RS18260	SM00327	von Willebrand factor (vWF) type A domain
ATY44_RS18275	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS18300	SM00965	Secretin and TonB N terminus short domain
ATY44_RS18355	SM00487	DEAD-like helicases superfamily
ATY44_RS18355	SM00490	helicase superfamily c-terminal domain
ATY44_RS18365	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY44_RS18365	SM00954	Region found in RelA / SpoT proteins
ATY44_RS18370	SM01409	ATY44_RS18370
ATY44_RS18390	SM00072	Guanylate kinase homologues.
ATY44_RS18415	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY44_RS18445	SM01011	Aminopeptidase P, N-terminal domain
ATY44_RS18540	SM00919	Malic enzyme, NAD binding domain
ATY44_RS18540	SM01274	ATY44_RS18540
ATY44_RS18560	SM00387	Histidine kinase-like ATPases
ATY44_RS18560	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS18560	SM00448	cheY-homologous receiver domain
ATY44_RS18590	SM00421	helix_turn_helix, Lux Regulon
ATY44_RS18590	SM00448	cheY-homologous receiver domain
ATY44_RS18600	SM00387	Histidine kinase-like ATPases
ATY44_RS18600	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS18605	SM00448	cheY-homologous receiver domain
ATY44_RS18605	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS18620	SM00822	ATY44_RS18620
ATY44_RS18625	SM00354	helix_turn _helix lactose operon repressor
ATY44_RS18645	SM00642	Alpha-amylase domain
ATY44_RS18655	SM01154	ATY44_RS18655
ATY44_RS18690	SM00450	Rhodanese Homology Domain
ATY44_RS18755	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS18765	SM00460	Transglutaminase/protease-like homologues
ATY44_RS18780	SM00493	ATY44_RS18780
ATY44_RS18790	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS18825	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY44_RS18830	SM00849	Metallo-beta-lactamase superfamily
ATY44_RS18855	SM01126	ATY44_RS18855
ATY44_RS18935	SM00331	Sigma factor PP2C-like phosphatases
ATY44_RS18935	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY44_RS18945	SM00479	ATY44_RS18945
ATY44_RS18960	SM00849	Metallo-beta-lactamase superfamily
ATY44_RS18965	SM00257	Lysin motif
ATY44_RS18990	SM00411	bacterial (prokaryotic) histone like domain
ATY44_RS18995	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS18995	SM00464	Found in ATP-dependent protease La (LON)
ATY44_RS19000	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS19000	SM00994	ClpX C4-type zinc finger
ATY44_RS19000	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY44_RS19065	SM01329	ATY44_RS19065
ATY44_RS19070	SM01126	ATY44_RS19070
ATY44_RS19100	SM00448	cheY-homologous receiver domain
ATY44_RS19100	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS19105	SM00387	Histidine kinase-like ATPases
ATY44_RS19105	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS19125	SM00014	Acid phosphatase homologues
ATY44_RS19175	SM00855	Phosphoglycerate mutase family
ATY44_RS19195	SM00829	Enoylreductase
ATY44_RS19205	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS19250	SM00829	Enoylreductase
ATY44_RS19305	SM01126	ATY44_RS19305
ATY44_RS19360	SM00838	Elongation factor G C-terminus
ATY44_RS19485	SM01126	ATY44_RS19485
ATY44_RS19530	SM00464	Found in ATP-dependent protease La (LON)
ATY44_RS19550	SM01126	ATY44_RS19550
ATY44_RS19560	SM01126	ATY44_RS19560
ATY44_RS19600	SM00342	helix_turn_helix, arabinose operon control protein
ATY44_RS19640	SM00917	LeuA allosteric (dimerisation) domain
ATY44_RS19645	SM01329	ATY44_RS19645
ATY44_RS19680	SM01126	ATY44_RS19680
ATY44_RS19755	SM00788	Adenylosuccinate synthetase
ATY44_RS19765	SM00244	prohibitin homologues
ATY44_RS19770	SM00244	prohibitin homologues
ATY44_RS19775	SM00448	cheY-homologous receiver domain
ATY44_RS19780	SM00271	DnaJ molecular chaperone homology domain
ATY44_RS19855	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS19890	SM00825	Beta-ketoacyl synthase
ATY44_RS19900	SM00822	ATY44_RS19900
ATY44_RS19905	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ATY44_RS19935	SM01126	ATY44_RS19935
ATY44_RS19940	SM00487	DEAD-like helicases superfamily
ATY44_RS20010	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY44_RS20010	SM00866	ATY44_RS20010
ATY44_RS20080	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS20095	SM01211	ATY44_RS20095
ATY44_RS20180	SM00656	ATY44_RS20180
ATY44_RS20240	SM00528	Domain in histone-like proteins of HNS family
ATY44_RS20255	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS20285	SM00882	Coenzyme A transferase
ATY44_RS20290	SM00882	Coenzyme A transferase
ATY44_RS20325	SM00893	Electron transfer flavoprotein domain
ATY44_RS20330	SM00893	Electron transfer flavoprotein domain
ATY44_RS20340	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS20395	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY44_RS20430	SM00487	DEAD-like helicases superfamily
ATY44_RS20430	SM00490	helicase superfamily c-terminal domain
ATY44_RS20455	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY44_RS20480	SM00825	Beta-ketoacyl synthase
ATY44_RS20580	SM01126	ATY44_RS20580
ATY44_RS20605	SM00830	Chorismate mutase type II
ATY44_RS20615	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS20685	SM00986	Uracil DNA glycosylase superfamily
ATY44_RS20685	SM00987	UreE urease accessory protein, C-terminal domain 
ATY44_RS20710	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS20710	SM00930	ATY44_RS20710
ATY44_RS20790	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY44_RS20790	SM00091	PAS domain
ATY44_RS20790	SM00387	Histidine kinase-like ATPases
ATY44_RS20790	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS20790	SM00448	cheY-homologous receiver domain
ATY44_RS20810	SM01005	Alanine racemase, C-terminal domain
ATY44_RS20820	SM00344	helix_turn_helix ASNC type
ATY44_RS20865	SM00448	cheY-homologous receiver domain
ATY44_RS20865	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS20870	SM00387	Histidine kinase-like ATPases
ATY44_RS20870	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS20905	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS20925	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATY44_RS20935	SM00986	Uracil DNA glycosylase superfamily
ATY44_RS20935	SM00987	UreE urease accessory protein, C-terminal domain 
ATY44_RS21005	SM00850	LytTr DNA-binding domain
ATY44_RS21010	SM00448	cheY-homologous receiver domain
ATY44_RS21015	SM00387	Histidine kinase-like ATPases
ATY44_RS21065	SM00138	Methyltransferase, chemotaxis proteins 
ATY44_RS21070	SM00448	cheY-homologous receiver domain
ATY44_RS21080	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS21080	SM00448	cheY-homologous receiver domain
ATY44_RS21215	SM01126	ATY44_RS21215
ATY44_RS21270	SM00100	Cyclic nucleotide-monophosphate binding domain
ATY44_RS21270	SM00419	helix_turn_helix, cAMP Regulatory protein
ATY44_RS21290	SM00903	Flavin reductase like domain
ATY44_RS21535	SM00257	Lysin motif
ATY44_RS21560	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ATY44_RS21560	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ATY44_RS21560	SM00493	ATY44_RS21560
ATY44_RS21615	SM00487	DEAD-like helicases superfamily
ATY44_RS21615	SM00490	helicase superfamily c-terminal domain
ATY44_RS21630	SM01126	ATY44_RS21630
ATY44_RS21665	SM00878	Biotin carboxylase C-terminal domain
ATY44_RS21695	SM00530	Helix-turn-helix XRE-family like proteins 
ATY44_RS21710	SM01126	ATY44_RS21710
ATY44_RS21740	SM00912	haemagglutination activity domain
ATY44_RS21765	SM01126	ATY44_RS21765
ATY44_RS21795	SM00798	AICARFT/IMPCHase bienzyme
ATY44_RS21795	SM00851	MGS-like domain
ATY44_RS21805	SM01209	ATY44_RS21805
ATY44_RS21805	SM01210	ATY44_RS21805
ATY44_RS21835	SM00563	Phosphate acyltransferases
ATY44_RS21895	SM00052	Putative diguanylate phosphodiesterase
ATY44_RS21895	SM00267	diguanylate cyclase
ATY44_RS21895	SM00448	cheY-homologous receiver domain
ATY44_RS21900	SM00073	Histidine Phosphotransfer domain
ATY44_RS21900	SM00387	Histidine kinase-like ATPases
ATY44_RS21900	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS21900	SM00448	cheY-homologous receiver domain
ATY44_RS21985	SM00470	ParB-like nuclease domain
ATY44_RS22005	SM01259	ATY44_RS22005
ATY44_RS22035	SM00836	DALR anticodon binding domain
ATY44_RS22035	SM01016	Arginyl tRNA synthetase N terminal dom
ATY44_RS22060	SM00090	RIO-like kinase
ATY44_RS22085	SM00998	Adenylosuccinate lyase C-terminus
ATY44_RS22160	SM00881	CoA binding domain
ATY44_RS22170	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY44_RS22170	SM00924	MgtE intracellular N domain
ATY44_RS22195	SM00226	Low molecular weight phosphatase family
ATY44_RS22200	SM00248	ankyrin repeats
ATY44_RS22210	SM00825	Beta-ketoacyl synthase
ATY44_RS22235	SM00822	ATY44_RS22235
ATY44_RS22250	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY44_RS22250	SM00876	Biotin and Thiamin Synthesis associated domain
ATY44_RS22295	SM01060	ATY44_RS22295
ATY44_RS22345	SM00849	Metallo-beta-lactamase superfamily
ATY44_RS22435	SM00387	Histidine kinase-like ATPases
ATY44_RS22435	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS22440	SM00448	cheY-homologous receiver domain
ATY44_RS22440	SM00862	Transcriptional regulatory protein, C terminal
ATY44_RS22465	SM00248	ankyrin repeats
ATY44_RS22470	SM01060	ATY44_RS22470
ATY44_RS22485	SM01126	ATY44_RS22485
ATY44_RS22500	SM00491	ATY44_RS22500
ATY44_RS22530	SM00477	DNA/RNA non-specific endonuclease
ATY44_RS22530	SM00892	DNA/RNA non-specific endonuclease
ATY44_RS22550	SM01004	Delta-aminolevulinic acid dehydratase
ATY44_RS22595	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY44_RS22615	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS22625	SM00530	Helix-turn-helix XRE-family like proteins 
ATY44_RS22650	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS22690	SM01126	ATY44_RS22690
ATY44_RS22785	SM00563	Phosphate acyltransferases
ATY44_RS22805	SM01321	ATY44_RS22805
ATY44_RS22810	SM01126	ATY44_RS22810
ATY44_RS22830	SM00346	helix_turn_helix isocitrate lyase regulation
ATY44_RS22850	SM00091	PAS domain
ATY44_RS22850	SM00387	Histidine kinase-like ATPases
ATY44_RS22850	SM00388	His Kinase A (phosphoacceptor) domain
ATY44_RS22850	SM00448	cheY-homologous receiver domain
ATY44_RS22880	SM00564	beta-propeller repeat
ATY44_RS22935	SM01126	ATY44_RS22935
ATY44_RS22970	SM01126	ATY44_RS22970
ATY44_RS22985	SM00382	ATPases associated with a variety of cellular activities
ATY44_RS23035	SM01126	ATY44_RS23035
ATY44_RS23040	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATY44_RS23040	SM01232	ATY44_RS23040
ATY44_RS23095	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY44_RS23095	SM00091	PAS domain
ATY44_RS23155	SM00829	Enoylreductase
ATY44_RS23225	SM00344	helix_turn_helix ASNC type
ATY44_RS23275	SM00829	Enoylreductase
ATY44_RS23305	SM00487	DEAD-like helicases superfamily
ATY44_RS23305	SM00490	helicase superfamily c-terminal domain
ATY44_RS23305	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY44_RS23315	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY44_RS23370	SM00421	helix_turn_helix, Lux Regulon
ATY44_RS23370	SM00448	cheY-homologous receiver domain
ATY44_RS23480	SM00155	Phospholipase D. Active site motifs.
ATY44_RS23505	SM01126	ATY44_RS23505
ATY44_RS23545	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY44_RS23580	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY44_RS23580	SM00245	tail specific protease
ATY44_RS23655	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY44_RS23775	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ATY44_RS23800	SM00014	Acid phosphatase homologues
ATY44_RS23810	SM00028	Tetratricopeptide repeats
