ATY45_RS00005	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
ATY45_RS00010	SM00480	DNA polymerase III beta subunit
ATY45_RS00020	SM00387	Histidine kinase-like ATPases
ATY45_RS00020	SM00433	TopoisomeraseII
ATY45_RS00035	SM00028	Tetratricopeptide repeats
ATY45_RS00070	SM00155	Phospholipase D. Active site motifs.
ATY45_RS00200	SM01126	ATY45_RS00200
ATY45_RS00285	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_RS00310	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY45_RS00420	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS00510	SM00267	diguanylate cyclase
ATY45_RS00520	SM00642	Alpha-amylase domain
ATY45_RS00525	SM00642	Alpha-amylase domain
ATY45_RS00535	SM00642	Alpha-amylase domain
ATY45_RS00545	SM00642	Alpha-amylase domain
ATY45_RS00580	SM01126	ATY45_RS00580
ATY45_RS00625	SM00487	DEAD-like helicases superfamily
ATY45_RS00625	SM00490	helicase superfamily c-terminal domain
ATY45_RS00660	SM01126	ATY45_RS00660
ATY45_RS00685	SM00487	DEAD-like helicases superfamily
ATY45_RS00685	SM00490	helicase superfamily c-terminal domain
ATY45_RS00760	SM01126	ATY45_RS00760
ATY45_RS00800	SM00354	helix_turn _helix lactose operon repressor
ATY45_RS00820	SM00642	Alpha-amylase domain
ATY45_RS00825	SM00642	Alpha-amylase domain
ATY45_RS00830	SM00642	Alpha-amylase domain
ATY45_RS00845	SM01126	ATY45_RS00845
ATY45_RS00885	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS00895	SM00938	Nitrogen regulatory protein P-II
ATY45_RS00910	SM01126	ATY45_RS00910
ATY45_RS00965	SM01228	ATY45_RS00965
ATY45_RS01030	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_RS01030	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS01065	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATY45_RS01085	SM00354	helix_turn _helix lactose operon repressor
ATY45_RS01095	SM00563	Phosphate acyltransferases
ATY45_RS01100	SM00829	Enoylreductase
ATY45_RS01165	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS01180	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS01210	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_RS01235	SM00855	Phosphoglycerate mutase family
ATY45_RS01240	SM00867	YceI-like domain 
ATY45_RS01245	SM00155	Phospholipase D. Active site motifs.
ATY45_RS01255	SM00563	Phosphate acyltransferases
ATY45_RS01270	SM00028	Tetratricopeptide repeats
ATY45_RS01295	SM01230	ATY45_RS01295
ATY45_RS01300	SM00938	Nitrogen regulatory protein P-II
ATY45_RS01310	SM00387	Histidine kinase-like ATPases
ATY45_RS01310	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS01315	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS01315	SM00448	cheY-homologous receiver domain
ATY45_RS01335	SM01126	ATY45_RS01335
ATY45_RS01405	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_RS01455	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_RS01480	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_RS01535	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS01605	SM00633	Glycosyl hydrolase family 10
ATY45_RS01610	SM00633	Glycosyl hydrolase family 10
ATY45_RS01640	SM00758	ATY45_RS01640
ATY45_RS01640	SM01217	ATY45_RS01640
ATY45_RS01650	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY45_RS01665	SM00354	helix_turn _helix lactose operon repressor
ATY45_RS01750	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS01760	SM00836	DALR anticodon binding domain
ATY45_RS01805	SM00833	Cobalamin synthesis protein cobW C-terminal domain
ATY45_RS01875	SM00878	Biotin carboxylase C-terminal domain
ATY45_RS01940	SM01126	ATY45_RS01940
ATY45_RS02030	SM00448	cheY-homologous receiver domain
ATY45_RS02030	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS02035	SM00387	Histidine kinase-like ATPases
ATY45_RS02040	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS02160	SM00563	Phosphate acyltransferases
ATY45_RS02225	SM00357	Cold shock protein domain
ATY45_RS02225	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS02225	SM00959	Rho termination factor, N-terminal domain
ATY45_RS02235	SM00487	DEAD-like helicases superfamily
ATY45_RS02235	SM00490	helicase superfamily c-terminal domain
ATY45_RS02240	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS02250	SM00448	cheY-homologous receiver domain
ATY45_RS02255	SM00986	Uracil DNA glycosylase superfamily
ATY45_RS02255	SM00987	UreE urease accessory protein, C-terminal domain 
ATY45_RS02300	SM00883	Chaperonin 10 Kd subunit
ATY45_RS02350	SM01126	ATY45_RS02350
ATY45_RS02390	SM00944	Pro-kumamolisin, activation domain
ATY45_RS02420	SM00867	YceI-like domain 
ATY45_RS02435	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS02435	SM00331	Sigma factor PP2C-like phosphatases
ATY45_RS02520	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY45_RS02520	SM00474	3'-5' exonuclease
ATY45_RS02520	SM00475	5'-3' exonuclease
ATY45_RS02520	SM00482	DNA polymerase A domain
ATY45_RS02580	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_RS02585	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_RS02670	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS02670	SM00448	cheY-homologous receiver domain
ATY45_RS02675	SM00387	Histidine kinase-like ATPases
ATY45_RS02675	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS02700	SM00450	Rhodanese Homology Domain
ATY45_RS02715	SM01126	ATY45_RS02715
ATY45_RS02725	SM01150	ATY45_RS02725
ATY45_RS02790	SM01126	ATY45_RS02790
ATY45_RS02805	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS02865	SM00400	zinc finger
ATY45_RS02865	SM00493	ATY45_RS02865
ATY45_RS02865	SM00766	DNA primase DnaG DnaB-binding
ATY45_RS02905	SM00905	Dihydroneopterin aldolase
ATY45_RS02910	SM01217	ATY45_RS02910
ATY45_RS02920	SM01126	ATY45_RS02920
ATY45_RS02940	SM01126	ATY45_RS02940
ATY45_RS02950	SM01126	ATY45_RS02950
ATY45_RS03015	SM01126	ATY45_RS03015
ATY45_RS03035	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY45_RS03045	SM00644	ATY45_RS03045
ATY45_RS03145	SM01126	ATY45_RS03145
ATY45_RS03150	SM00861	Transketolase, pyrimidine binding domain
ATY45_RS03175	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_RS03270	SM00271	DnaJ molecular chaperone homology domain
ATY45_RS03285	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATY45_RS03395	SM00060	Fibronectin type 3 domain
ATY45_RS03465	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_RS03475	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_RS03475	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_RS03475	SM00091	PAS domain
ATY45_RS03475	SM00267	diguanylate cyclase
ATY45_RS03495	SM00637	ATY45_RS03495
ATY45_RS03510	SM00267	diguanylate cyclase
ATY45_RS03555	SM00448	cheY-homologous receiver domain
ATY45_RS03555	SM00850	LytTr DNA-binding domain
ATY45_RS03645	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS03645	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_RS03660	SM01263	ATY45_RS03660
ATY45_RS03665	SM00267	diguanylate cyclase
ATY45_RS03730	SM00268	Actin
ATY45_RS03825	SM00936	Penicillin-binding protein 5, C-terminal domain 
ATY45_RS03845	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_RS03850	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_RS03850	SM00245	tail specific protease
ATY45_RS03900	SM01350	ATY45_RS03900
ATY45_RS03910	SM00749	bacterial OsmY and nodulation domain
ATY45_RS03915	SM00387	Histidine kinase-like ATPases
ATY45_RS03915	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS03920	SM00448	cheY-homologous receiver domain
ATY45_RS03925	SM00387	Histidine kinase-like ATPases
ATY45_RS03925	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS03925	SM00448	cheY-homologous receiver domain
ATY45_RS03985	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY45_RS03985	SM00866	ATY45_RS03985
ATY45_RS03995	SM00354	helix_turn _helix lactose operon repressor
ATY45_RS04035	SM01126	ATY45_RS04035
ATY45_RS04065	SM01126	ATY45_RS04065
ATY45_RS04205	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS04205	SM00387	Histidine kinase-like ATPases
ATY45_RS04205	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS04210	SM00448	cheY-homologous receiver domain
ATY45_RS04210	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS04230	SM00829	Enoylreductase
ATY45_RS04260	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS04380	SM00387	Histidine kinase-like ATPases
ATY45_RS04380	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS04385	SM00448	cheY-homologous receiver domain
ATY45_RS04385	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS04490	SM00842	Cell division protein FtsA
ATY45_RS04495	SM00864	Tubulin/FtsZ family, GTPase domain
ATY45_RS04495	SM00865	Tubulin/FtsZ family, C-terminal domain
ATY45_RS04515	SM00957	SecA DEAD-like domain
ATY45_RS04515	SM00958	SecA preprotein cross-linking domain
ATY45_RS04550	SM00829	Enoylreductase
ATY45_RS04620	SM00996	S-adenosyl-L-homocysteine hydrolase
ATY45_RS04620	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ATY45_RS04755	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS04775	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS04785	SM00448	cheY-homologous receiver domain
ATY45_RS04785	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS04790	SM00387	Histidine kinase-like ATPases
ATY45_RS04790	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS04855	SM00650	Ribosomal RNA adenine dimethylases
ATY45_RS04915	SM01126	ATY45_RS04915
ATY45_RS04960	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_RS05060	SM00448	cheY-homologous receiver domain
ATY45_RS05065	SM00387	Histidine kinase-like ATPases
ATY45_RS05065	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS05065	SM00448	cheY-homologous receiver domain
ATY45_RS05070	SM00421	helix_turn_helix, Lux Regulon
ATY45_RS05095	SM01126	ATY45_RS05095
ATY45_RS05165	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY45_RS05165	SM00475	5'-3' exonuclease
ATY45_RS05180	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATY45_RS05180	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATY45_RS05290	SM00852	Probable molybdopterin binding domain
ATY45_RS05295	SM00028	Tetratricopeptide repeats
ATY45_RS05300	SM00937	ATY45_RS05300
ATY45_RS05310	SM00028	Tetratricopeptide repeats
ATY45_RS05330	SM01400	ATY45_RS05330
ATY45_RS05380	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ATY45_RS05380	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY45_RS05385	SM00649	Ribosomal protein L11/L12
ATY45_RS05410	SM00663	RNA polymerase I subunit A N-terminus
ATY45_RS05425	SM00838	Elongation factor G C-terminus
ATY45_RS05425	SM00889	Elongation factor G, domain IV
ATY45_RS05435	SM01403	ATY45_RS05435
ATY45_RS05455	SM01382	ATY45_RS05455
ATY45_RS05455	SM01383	ATY45_RS05455
ATY45_RS05470	SM00322	K homology RNA-binding domain
ATY45_RS05490	SM01374	ATY45_RS05490
ATY45_RS05495	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY45_RS05555	SM00363	S4 RNA-binding domain
ATY45_RS05555	SM01390	ATY45_RS05555
ATY45_RS05560	SM00662	RNA polymerases D
ATY45_RS05615	SM00990	ATY45_RS05615
ATY45_RS05645	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS05680	SM00448	cheY-homologous receiver domain
ATY45_RS05680	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS05685	SM00387	Histidine kinase-like ATPases
ATY45_RS05685	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS05730	SM00421	helix_turn_helix, Lux Regulon
ATY45_RS05730	SM00448	cheY-homologous receiver domain
ATY45_RS05745	SM00478	endonuclease III
ATY45_RS06005	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS06005	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_RS06115	SM00487	DEAD-like helicases superfamily
ATY45_RS06115	SM00490	helicase superfamily c-terminal domain
ATY45_RS06150	SM00487	DEAD-like helicases superfamily
ATY45_RS06160	SM00220	Serine/Threonine protein kinases, catalytic domain
ATY45_RS06190	SM00855	Phosphoglycerate mutase family
ATY45_RS06215	SM00966	SpoVT / AbrB like domain 
ATY45_RS06235	SM00481	DNA polymerase alpha chain like domain
ATY45_RS06240	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_RS06300	SM00091	PAS domain
ATY45_RS06300	SM00342	helix_turn_helix, arabinose operon control protein
ATY45_RS06325	SM01060	ATY45_RS06325
ATY45_RS06385	SM00506	Appr-1"-p processing enzyme
ATY45_RS06435	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_RS06435	SM00387	Histidine kinase-like ATPases
ATY45_RS06520	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY45_RS06535	SM01126	ATY45_RS06535
ATY45_RS06615	SM00869	Autotransporter beta-domain
ATY45_RS06625	SM01126	ATY45_RS06625
ATY45_RS06660	SM00528	Domain in histone-like proteins of HNS family
ATY45_RS06695	SM01126	ATY45_RS06695
ATY45_RS06700	SM01126	ATY45_RS06700
ATY45_RS06710	SM00642	Alpha-amylase domain
ATY45_RS06725	SM01126	ATY45_RS06725
ATY45_RS06780	SM01126	ATY45_RS06780
ATY45_RS06895	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_RS06960	SM00977	TilS substrate C-terminal domain
ATY45_RS06965	SM00098	Alkaline phosphatase homologues
ATY45_RS07015	SM01126	ATY45_RS07015
ATY45_RS07025	SM01160	ATY45_RS07025
ATY45_RS07065	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_RS07100	SM00257	Lysin motif
ATY45_RS07135	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY45_RS07210	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS07210	SM00267	diguanylate cyclase
ATY45_RS07210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS07245	SM00822	ATY45_RS07245
ATY45_RS07290	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
ATY45_RS07295	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
ATY45_RS07345	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_RS07345	SM00322	K homology RNA-binding domain
ATY45_RS07365	SM01387	ATY45_RS07365
ATY45_RS07370	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_RS07370	SM00322	K homology RNA-binding domain
ATY45_RS07390	SM01001	AIR carboxylase
ATY45_RS07475	SM00487	DEAD-like helicases superfamily
ATY45_RS07475	SM00490	helicase superfamily c-terminal domain
ATY45_RS07505	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY45_RS07530	SM00873	B3/4 domain
ATY45_RS07530	SM00874	tRNA synthetase B5 domain
ATY45_RS07530	SM00896	Ferredoxin-fold anticodon binding domain
ATY45_RS07535	SM00411	bacterial (prokaryotic) histone like domain
ATY45_RS07540	SM00422	helix_turn_helix, mercury resistance
ATY45_RS07740	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_RS07740	SM00091	PAS domain
ATY45_RS07740	SM00387	Histidine kinase-like ATPases
ATY45_RS07740	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS07740	SM00448	cheY-homologous receiver domain
ATY45_RS07750	SM00478	endonuclease III
ATY45_RS07765	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS07765	SM00962	SRP54-type protein, GTPase domain
ATY45_RS07765	SM00963	SRP54-type protein, helical bundle domain
ATY45_RS07770	SM00342	helix_turn_helix, arabinose operon control protein
ATY45_RS07795	SM01130	ATY45_RS07795
ATY45_RS07860	SM00944	Pro-kumamolisin, activation domain
ATY45_RS07925	SM01126	ATY45_RS07925
ATY45_RS07945	SM00852	Probable molybdopterin binding domain
ATY45_RS07985	SM01012	ATY45_RS07985
ATY45_RS07995	SM01126	ATY45_RS07995
ATY45_RS08005	SM01126	ATY45_RS08005
ATY45_RS08045	SM00984	UDP binding domain
ATY45_RS08065	SM00450	Rhodanese Homology Domain
ATY45_RS08070	SM00421	helix_turn_helix, Lux Regulon
ATY45_RS08070	SM00448	cheY-homologous receiver domain
ATY45_RS08090	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_RS08095	SM00363	S4 RNA-binding domain
ATY45_RS08225	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS08225	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_RS08255	SM00240	Forkhead associated domain
ATY45_RS08280	SM00331	Sigma factor PP2C-like phosphatases
ATY45_RS08280	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY45_RS08310	SM00387	Histidine kinase-like ATPases
ATY45_RS08320	SM00448	cheY-homologous receiver domain
ATY45_RS08320	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS08555	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_RS08565	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS08600	SM01091	Transporter associated domain
ATY45_RS08625	SM00387	Histidine kinase-like ATPases
ATY45_RS08625	SM00433	TopoisomeraseII
ATY45_RS08650	SM01192	ATY45_RS08650
ATY45_RS08650	SM01193	ATY45_RS08650
ATY45_RS08680	SM00463	Small MutS-related domain
ATY45_RS08700	SM00257	Lysin motif
ATY45_RS08710	SM01103	ATY45_RS08710
ATY45_RS08720	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS08760	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS08770	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY45_RS08875	SM00670	Large family of predicted nucleotide-binding domains
ATY45_RS08895	SM01130	ATY45_RS08895
ATY45_RS08920	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY45_RS08940	SM00758	ATY45_RS08940
ATY45_RS08985	SM00841	Elongation factor P, C-terminal
ATY45_RS08985	SM01185	ATY45_RS08985
ATY45_RS08990	SM00822	ATY45_RS08990
ATY45_RS09010	SM00899	ATY45_RS09010
ATY45_RS09060	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ATY45_RS09070	SM00851	MGS-like domain
ATY45_RS09070	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATY45_RS09095	SM01126	ATY45_RS09095
ATY45_RS09125	SM00850	LytTr DNA-binding domain
ATY45_RS09130	SM00937	ATY45_RS09130
ATY45_RS09140	SM00448	cheY-homologous receiver domain
ATY45_RS09140	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_RS09150	SM00073	Histidine Phosphotransfer domain
ATY45_RS09150	SM00387	Histidine kinase-like ATPases
ATY45_RS09150	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS09150	SM00448	cheY-homologous receiver domain
ATY45_RS09175	SM00966	SpoVT / AbrB like domain 
ATY45_RS09200	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS09200	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_RS09200	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_RS09200	SM00091	PAS domain
ATY45_RS09200	SM00267	diguanylate cyclase
ATY45_RS09205	SM00448	cheY-homologous receiver domain
ATY45_RS09215	SM00138	Methyltransferase, chemotaxis proteins 
ATY45_RS09220	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_RS09220	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS09260	SM00260	Two component signalling adaptor domain
ATY45_RS09275	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_RS09275	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS09280	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_RS09280	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS09285	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_RS09285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS09290	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_RS09290	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS09300	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_RS09300	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS09305	SM01126	ATY45_RS09305
ATY45_RS09310	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_RS09340	SM00073	Histidine Phosphotransfer domain
ATY45_RS09340	SM00260	Two component signalling adaptor domain
ATY45_RS09340	SM00387	Histidine kinase-like ATPases
ATY45_RS09340	SM01231	ATY45_RS09340
ATY45_RS09345	SM00448	cheY-homologous receiver domain
ATY45_RS09355	SM00260	Two component signalling adaptor domain
ATY45_RS09475	SM00354	helix_turn _helix lactose operon repressor
ATY45_RS09485	SM01126	ATY45_RS09485
ATY45_RS09520	SM00448	cheY-homologous receiver domain
ATY45_RS09520	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_RS09525	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_RS09525	SM00091	PAS domain
ATY45_RS09525	SM00387	Histidine kinase-like ATPases
ATY45_RS09525	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS09525	SM00448	cheY-homologous receiver domain
ATY45_RS09525	SM01079	ATY45_RS09525
ATY45_RS09590	SM00267	diguanylate cyclase
ATY45_RS09590	SM00448	cheY-homologous receiver domain
ATY45_RS09600	SM01230	ATY45_RS09600
ATY45_RS09610	SM01230	ATY45_RS09610
ATY45_RS09635	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS09670	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_RS09670	SM01091	Transporter associated domain
ATY45_RS09695	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_RS09770	SM01126	ATY45_RS09770
ATY45_RS09775	SM01126	ATY45_RS09775
ATY45_RS09825	SM00528	Domain in histone-like proteins of HNS family
ATY45_RS09840	SM00474	3'-5' exonuclease
ATY45_RS09885	SM00646	ATY45_RS09885
ATY45_RS09890	SM00853	MutL C terminal dimerisation domain
ATY45_RS09890	SM01340	ATY45_RS09890
ATY45_RS09910	SM00822	ATY45_RS09910
ATY45_RS09925	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS09925	SM00267	diguanylate cyclase
ATY45_RS09935	SM01322	ATY45_RS09935
ATY45_RS09945	SM00357	Cold shock protein domain
ATY45_RS09970	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS09970	SM00487	DEAD-like helicases superfamily
ATY45_RS09970	SM00490	helicase superfamily c-terminal domain
ATY45_RS09975	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS10020	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS10020	SM00267	diguanylate cyclase
ATY45_RS10020	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS10030	SM00841	Elongation factor P, C-terminal
ATY45_RS10030	SM01185	ATY45_RS10030
ATY45_RS10165	SM00387	Histidine kinase-like ATPases
ATY45_RS10360	SM00344	helix_turn_helix ASNC type
ATY45_RS10375	SM01323	ATY45_RS10375
ATY45_RS10440	SM00479	ATY45_RS10440
ATY45_RS10455	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS10500	SM00947	Carbonic anhydrase
ATY45_RS10510	SM00478	endonuclease III
ATY45_RS10535	SM00450	Rhodanese Homology Domain
ATY45_RS10545	SM00644	ATY45_RS10545
ATY45_RS10575	SM00981	ATY45_RS10575
ATY45_RS10610	SM00479	ATY45_RS10610
ATY45_RS10635	SM00947	Carbonic anhydrase
ATY45_RS10690	SM00968	SMC proteins Flexible Hinge Domain
ATY45_RS10695	SM00771	ZipA, C-terminal domain (FtsZ-binding)
ATY45_RS10705	SM00292	breast cancer carboxy-terminal domain
ATY45_RS10705	SM00532	Ligase N family
ATY45_RS10730	SM00434	DNA Topoisomerase IV
ATY45_RS10780	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY45_RS10780	SM00866	ATY45_RS10780
ATY45_RS10800	SM00240	Forkhead associated domain
ATY45_RS10825	SM00830	Chorismate mutase type II
ATY45_RS10855	SM00869	Autotransporter beta-domain
ATY45_RS10860	SM00421	helix_turn_helix, Lux Regulon
ATY45_RS10860	SM00448	cheY-homologous receiver domain
ATY45_RS10865	SM00387	Histidine kinase-like ATPases
ATY45_RS10865	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS10885	SM00869	Autotransporter beta-domain
ATY45_RS10915	SM00646	ATY45_RS10915
ATY45_RS10990	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS10990	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_RS10990	SM00267	diguanylate cyclase
ATY45_RS11005	SM01217	ATY45_RS11005
ATY45_RS11010	SM00631	ATY45_RS11010
ATY45_RS11040	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_RS11085	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS11140	SM00267	diguanylate cyclase
ATY45_RS11200	SM00267	diguanylate cyclase
ATY45_RS11255	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS11290	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATY45_RS11295	SM00226	Low molecular weight phosphatase family
ATY45_RS11315	SM00450	Rhodanese Homology Domain
ATY45_RS11335	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_RS11335	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_RS11335	SM00091	PAS domain
ATY45_RS11335	SM00387	Histidine kinase-like ATPases
ATY45_RS11335	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS11335	SM00448	cheY-homologous receiver domain
ATY45_RS11340	SM00448	cheY-homologous receiver domain
ATY45_RS11400	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS11455	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS11465	SM01126	ATY45_RS11465
ATY45_RS11470	SM00849	Metallo-beta-lactamase superfamily
ATY45_RS11485	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS11500	SM00226	Low molecular weight phosphatase family
ATY45_RS11510	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY45_RS11510	SM00465	GIY-YIG type nucleases (URI domain)
ATY45_RS11545	SM01126	ATY45_RS11545
ATY45_RS11625	SM01126	ATY45_RS11625
ATY45_RS11775	SM00419	helix_turn_helix, cAMP Regulatory protein
ATY45_RS11870	SM00014	Acid phosphatase homologues
ATY45_RS11880	SM00387	Histidine kinase-like ATPases
ATY45_RS11885	SM00448	cheY-homologous receiver domain
ATY45_RS11900	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_RS11900	SM00732	Likely ribonuclease with RNase H fold.
ATY45_RS11970	SM00479	ATY45_RS11970
ATY45_RS11980	SM00529	Helix-turn-helix diphteria tox regulatory element
ATY45_RS11990	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS12055	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_RS12055	SM01240	ATY45_RS12055
ATY45_RS12105	SM00822	ATY45_RS12105
ATY45_RS12125	SM00411	bacterial (prokaryotic) histone like domain
ATY45_RS12130	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_RS12235	SM00363	S4 RNA-binding domain
ATY45_RS12250	SM01126	ATY45_RS12250
ATY45_RS12265	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS12350	SM01007	Class II Aldolase and Adducin N-terminal domain
ATY45_RS12400	SM00450	Rhodanese Homology Domain
ATY45_RS12410	SM01126	ATY45_RS12410
ATY45_RS12490	SM00852	Probable molybdopterin binding domain
ATY45_RS12495	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS12500	SM00564	beta-propeller repeat
ATY45_RS12515	SM00028	Tetratricopeptide repeats
ATY45_RS12525	SM00562	ATY45_RS12525
ATY45_RS12575	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS12595	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS12595	SM00843	ATY45_RS12595
ATY45_RS12625	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_RS12630	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS12630	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_RS12655	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_RS12670	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS12670	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_RS12670	SM00091	PAS domain
ATY45_RS12670	SM00267	diguanylate cyclase
ATY45_RS12675	SM00091	PAS domain
ATY45_RS12675	SM00387	Histidine kinase-like ATPases
ATY45_RS12680	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS12680	SM00267	diguanylate cyclase
ATY45_RS12680	SM00448	cheY-homologous receiver domain
ATY45_RS12685	SM00387	Histidine kinase-like ATPases
ATY45_RS12700	SM00858	ATY45_RS12700
ATY45_RS12705	SM00260	Two component signalling adaptor domain
ATY45_RS12705	SM00448	cheY-homologous receiver domain
ATY45_RS12750	SM00047	Lysozyme subfamily 2
ATY45_RS12790	SM00421	helix_turn_helix, Lux Regulon
ATY45_RS12790	SM00448	cheY-homologous receiver domain
ATY45_RS12800	SM00448	cheY-homologous receiver domain
ATY45_RS12805	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS12825	SM00822	ATY45_RS12825
ATY45_RS12830	SM00822	ATY45_RS12830
ATY45_RS12880	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS12935	SM00267	diguanylate cyclase
ATY45_RS12940	SM00267	diguanylate cyclase
ATY45_RS12945	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS12945	SM00267	diguanylate cyclase
ATY45_RS12960	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS12960	SM00962	SRP54-type protein, GTPase domain
ATY45_RS12975	SM00448	cheY-homologous receiver domain
ATY45_RS12985	SM00073	Histidine Phosphotransfer domain
ATY45_RS12985	SM00260	Two component signalling adaptor domain
ATY45_RS12985	SM00387	Histidine kinase-like ATPases
ATY45_RS12985	SM01231	ATY45_RS12985
ATY45_RS13035	SM01126	ATY45_RS13035
ATY45_RS13120	SM01126	ATY45_RS13120
ATY45_RS13130	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS13135	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS13170	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
ATY45_RS13180	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ATY45_RS13200	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY45_RS13240	SM00840	ATY45_RS13240
ATY45_RS13255	SM00245	tail specific protease
ATY45_RS13270	SM01234	ATY45_RS13270
ATY45_RS13390	SM01126	ATY45_RS13390
ATY45_RS13440	SM01126	ATY45_RS13440
ATY45_RS13470	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY45_RS13485	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_RS13485	SM00357	Cold shock protein domain
ATY45_RS13485	SM00955	ATY45_RS13485
ATY45_RS13515	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATY45_RS13525	SM01018	B12 binding domain
ATY45_RS13545	SM00354	helix_turn _helix lactose operon repressor
ATY45_RS13565	SM00984	UDP binding domain
ATY45_RS13580	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY45_RS13585	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS13680	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_RS13685	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY45_RS13695	SM00861	Transketolase, pyrimidine binding domain
ATY45_RS13720	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS13755	SM00271	DnaJ molecular chaperone homology domain
ATY45_RS13825	SM00507	HNH nucleases
ATY45_RS13830	SM00861	Transketolase, pyrimidine binding domain
ATY45_RS13855	SM01126	ATY45_RS13855
ATY45_RS13900	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_RS13905	SM00342	helix_turn_helix, arabinose operon control protein
ATY45_RS13910	SM00434	DNA Topoisomerase IV
ATY45_RS13940	SM00710	Parallel beta-helix repeats
ATY45_RS13940	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
ATY45_RS13945	SM01172	ATY45_RS13945
ATY45_RS13975	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_RS13985	SM00972	Spore Coat Protein U domain
ATY45_RS14000	SM00972	Spore Coat Protein U domain
ATY45_RS14055	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_RS14090	SM00481	DNA polymerase alpha chain like domain
ATY45_RS14110	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS14470	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATY45_RS14475	SM00869	Autotransporter beta-domain
ATY45_RS14495	SM00267	diguanylate cyclase
ATY45_RS14525	SM00487	DEAD-like helicases superfamily
ATY45_RS14525	SM00490	helicase superfamily c-terminal domain
ATY45_RS14545	SM00357	Cold shock protein domain
ATY45_RS14590	SM01118	ATY45_RS14590
ATY45_RS14600	SM00448	cheY-homologous receiver domain
ATY45_RS14615	SM00358	Double-stranded RNA binding motif
ATY45_RS14615	SM00535	Ribonuclease III family
ATY45_RS14630	SM00838	Elongation factor G C-terminus
ATY45_RS14635	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_RS14685	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_RS14710	SM00812	Alpha-L-fucosidase
ATY45_RS14730	SM00387	Histidine kinase-like ATPases
ATY45_RS14730	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS14730	SM00448	cheY-homologous receiver domain
ATY45_RS14735	SM00387	Histidine kinase-like ATPases
ATY45_RS14735	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS14735	SM00448	cheY-homologous receiver domain
ATY45_RS14740	SM00387	Histidine kinase-like ATPases
ATY45_RS14740	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS14740	SM00448	cheY-homologous receiver domain
ATY45_RS14745	SM00867	YceI-like domain 
ATY45_RS14755	SM00867	YceI-like domain 
ATY45_RS14805	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_RS14890	SM00244	prohibitin homologues
ATY45_RS14940	SM00812	Alpha-L-fucosidase
ATY45_RS14945	SM00636	ATY45_RS14945
ATY45_RS14965	SM00758	ATY45_RS14965
ATY45_RS14965	SM01217	ATY45_RS14965
ATY45_RS14970	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS15020	SM01149	ATY45_RS15020
ATY45_RS15065	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY45_RS15080	SM01126	ATY45_RS15080
ATY45_RS15085	SM00327	von Willebrand factor (vWF) type A domain
ATY45_RS15110	SM00260	Two component signalling adaptor domain
ATY45_RS15120	SM00073	Histidine Phosphotransfer domain
ATY45_RS15120	SM00260	Two component signalling adaptor domain
ATY45_RS15120	SM00387	Histidine kinase-like ATPases
ATY45_RS15120	SM00448	cheY-homologous receiver domain
ATY45_RS15120	SM01231	ATY45_RS15120
ATY45_RS15125	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_RS15130	SM00260	Two component signalling adaptor domain
ATY45_RS15135	SM00448	cheY-homologous receiver domain
ATY45_RS15140	SM00448	cheY-homologous receiver domain
ATY45_RS15165	SM00491	ATY45_RS15165
ATY45_RS15190	SM00954	Region found in RelA / SpoT proteins
ATY45_RS15245	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS15245	SM00487	DEAD-like helicases superfamily
ATY45_RS15245	SM00490	helicase superfamily c-terminal domain
ATY45_RS15245	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY45_RS15255	SM00341	Helicase and RNase D C-terminal
ATY45_RS15255	SM00487	DEAD-like helicases superfamily
ATY45_RS15255	SM00490	helicase superfamily c-terminal domain
ATY45_RS15255	SM00956	ATY45_RS15255
ATY45_RS15265	SM00448	cheY-homologous receiver domain
ATY45_RS15345	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS15355	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY45_RS15390	SM00834	Putative regulatory protein
ATY45_RS15430	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS15455	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ATY45_RS15455	SM00534	ATPase domain of DNA mismatch repair MUTS family
ATY45_RS15530	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_RS15575	SM00904	Riboflavin kinase
ATY45_RS15740	SM00881	CoA binding domain
ATY45_RS15750	SM00387	Histidine kinase-like ATPases
ATY45_RS15750	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS15755	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS15755	SM00448	cheY-homologous receiver domain
ATY45_RS15840	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS15870	SM00448	cheY-homologous receiver domain
ATY45_RS15870	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS15875	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS15875	SM00387	Histidine kinase-like ATPases
ATY45_RS15875	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS15910	SM00363	S4 RNA-binding domain
ATY45_RS15915	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS15915	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_RS15915	SM00091	PAS domain
ATY45_RS15915	SM00267	diguanylate cyclase
ATY45_RS15920	SM00487	DEAD-like helicases superfamily
ATY45_RS15920	SM00490	helicase superfamily c-terminal domain
ATY45_RS15985	SM00829	Enoylreductase
ATY45_RS16115	SM00357	Cold shock protein domain
ATY45_RS16180	SM00645	Papain family cysteine protease
ATY45_RS16195	SM00645	Papain family cysteine protease
ATY45_RS16215	SM00645	Papain family cysteine protease
ATY45_RS16230	SM00387	Histidine kinase-like ATPases
ATY45_RS16230	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS16255	SM00487	DEAD-like helicases superfamily
ATY45_RS16255	SM00490	helicase superfamily c-terminal domain
ATY45_RS16255	SM00982	ATY45_RS16255
ATY45_RS16255	SM01058	CarD-like/TRCF domain
ATY45_RS16265	SM00073	Histidine Phosphotransfer domain
ATY45_RS16265	SM00260	Two component signalling adaptor domain
ATY45_RS16265	SM00387	Histidine kinase-like ATPases
ATY45_RS16265	SM01231	ATY45_RS16265
ATY45_RS16270	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_RS16270	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_RS16275	SM00260	Two component signalling adaptor domain
ATY45_RS16280	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS16280	SM00448	cheY-homologous receiver domain
ATY45_RS16285	SM00138	Methyltransferase, chemotaxis proteins 
ATY45_RS16290	SM00448	cheY-homologous receiver domain
ATY45_RS16315	SM00855	Phosphoglycerate mutase family
ATY45_RS16370	SM01126	ATY45_RS16370
ATY45_RS16455	SM01126	ATY45_RS16455
ATY45_RS16470	SM00829	Enoylreductase
ATY45_RS16475	SM00267	diguanylate cyclase
ATY45_RS16555	SM00732	Likely ribonuclease with RNase H fold.
ATY45_RS16600	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS16620	SM00411	bacterial (prokaryotic) histone like domain
ATY45_RS16660	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
ATY45_RS16675	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS16715	SM01126	ATY45_RS16715
ATY45_RS16735	SM01126	ATY45_RS16735
ATY45_RS16750	SM01230	ATY45_RS16750
ATY45_RS16795	SM00342	helix_turn_helix, arabinose operon control protein
ATY45_RS16800	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS16845	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS16945	SM00855	Phosphoglycerate mutase family
ATY45_RS17020	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS17020	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_RS17060	SM00363	S4 RNA-binding domain
ATY45_RS17115	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS17115	SM00962	SRP54-type protein, GTPase domain
ATY45_RS17115	SM00963	SRP54-type protein, helical bundle domain
ATY45_RS17120	SM01126	ATY45_RS17120
ATY45_RS17135	SM00813	Alpha-L-arabinofuranosidase C-terminus
ATY45_RS17270	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_RS17290	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS17335	SM00924	MgtE intracellular N domain
ATY45_RS17375	SM00421	helix_turn_helix, Lux Regulon
ATY45_RS17400	SM00849	Metallo-beta-lactamase superfamily
ATY45_RS17410	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY45_RS17435	SM00422	helix_turn_helix, mercury resistance
ATY45_RS17730	SM00448	cheY-homologous receiver domain
ATY45_RS17730	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS17735	SM00387	Histidine kinase-like ATPases
ATY45_RS17735	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS17740	SM01126	ATY45_RS17740
ATY45_RS17755	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATY45_RS17800	SM00849	Metallo-beta-lactamase superfamily
ATY45_RS17815	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS17835	SM00387	Histidine kinase-like ATPases
ATY45_RS17835	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS17840	SM00448	cheY-homologous receiver domain
ATY45_RS17840	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS17900	SM00861	Transketolase, pyrimidine binding domain
ATY45_RS17925	SM00028	Tetratricopeptide repeats
ATY45_RS17925	SM00327	von Willebrand factor (vWF) type A domain
ATY45_RS17930	SM00327	von Willebrand factor (vWF) type A domain
ATY45_RS17945	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS17970	SM00965	Secretin and TonB N terminus short domain
ATY45_RS18025	SM00487	DEAD-like helicases superfamily
ATY45_RS18025	SM00490	helicase superfamily c-terminal domain
ATY45_RS18035	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_RS18035	SM00954	Region found in RelA / SpoT proteins
ATY45_RS18040	SM01409	ATY45_RS18040
ATY45_RS18055	SM00072	Guanylate kinase homologues.
ATY45_RS18080	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_RS18110	SM01011	Aminopeptidase P, N-terminal domain
ATY45_RS18200	SM00919	Malic enzyme, NAD binding domain
ATY45_RS18200	SM01274	ATY45_RS18200
ATY45_RS18220	SM00387	Histidine kinase-like ATPases
ATY45_RS18220	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS18220	SM00448	cheY-homologous receiver domain
ATY45_RS18250	SM00421	helix_turn_helix, Lux Regulon
ATY45_RS18250	SM00448	cheY-homologous receiver domain
ATY45_RS18260	SM00387	Histidine kinase-like ATPases
ATY45_RS18260	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS18265	SM00448	cheY-homologous receiver domain
ATY45_RS18265	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS18280	SM00822	ATY45_RS18280
ATY45_RS18285	SM00354	helix_turn _helix lactose operon repressor
ATY45_RS18305	SM00642	Alpha-amylase domain
ATY45_RS18315	SM01154	ATY45_RS18315
ATY45_RS18350	SM00450	Rhodanese Homology Domain
ATY45_RS18415	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS18425	SM00460	Transglutaminase/protease-like homologues
ATY45_RS18440	SM00493	ATY45_RS18440
ATY45_RS18450	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS18485	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_RS18490	SM00849	Metallo-beta-lactamase superfamily
ATY45_RS18515	SM01126	ATY45_RS18515
ATY45_RS18580	SM00331	Sigma factor PP2C-like phosphatases
ATY45_RS18580	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY45_RS18590	SM00479	ATY45_RS18590
ATY45_RS18605	SM00849	Metallo-beta-lactamase superfamily
ATY45_RS18610	SM00257	Lysin motif
ATY45_RS18635	SM00411	bacterial (prokaryotic) histone like domain
ATY45_RS18640	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS18640	SM00464	Found in ATP-dependent protease La (LON)
ATY45_RS18645	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS18645	SM00994	ClpX C4-type zinc finger
ATY45_RS18645	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_RS18710	SM01329	ATY45_RS18710
ATY45_RS18715	SM01126	ATY45_RS18715
ATY45_RS18745	SM00448	cheY-homologous receiver domain
ATY45_RS18745	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS18750	SM00387	Histidine kinase-like ATPases
ATY45_RS18750	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS18770	SM00014	Acid phosphatase homologues
ATY45_RS18825	SM00855	Phosphoglycerate mutase family
ATY45_RS18845	SM00829	Enoylreductase
ATY45_RS18855	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS18900	SM00829	Enoylreductase
ATY45_RS18950	SM01126	ATY45_RS18950
ATY45_RS19005	SM00838	Elongation factor G C-terminus
ATY45_RS19135	SM01126	ATY45_RS19135
ATY45_RS19180	SM00464	Found in ATP-dependent protease La (LON)
ATY45_RS19200	SM01126	ATY45_RS19200
ATY45_RS19210	SM01126	ATY45_RS19210
ATY45_RS19250	SM00342	helix_turn_helix, arabinose operon control protein
ATY45_RS19290	SM00917	LeuA allosteric (dimerisation) domain
ATY45_RS19295	SM01329	ATY45_RS19295
ATY45_RS19330	SM01126	ATY45_RS19330
ATY45_RS19405	SM00788	Adenylosuccinate synthetase
ATY45_RS19415	SM00244	prohibitin homologues
ATY45_RS19420	SM00244	prohibitin homologues
ATY45_RS19425	SM00448	cheY-homologous receiver domain
ATY45_RS19430	SM00271	DnaJ molecular chaperone homology domain
ATY45_RS19515	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS19550	SM00825	Beta-ketoacyl synthase
ATY45_RS19560	SM00822	ATY45_RS19560
ATY45_RS19565	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ATY45_RS19595	SM01126	ATY45_RS19595
ATY45_RS19600	SM00487	DEAD-like helicases superfamily
ATY45_RS19670	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY45_RS19670	SM00866	ATY45_RS19670
ATY45_RS19740	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS19755	SM01211	ATY45_RS19755
ATY45_RS19840	SM00656	ATY45_RS19840
ATY45_RS19895	SM00528	Domain in histone-like proteins of HNS family
ATY45_RS19910	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS19940	SM00882	Coenzyme A transferase
ATY45_RS19945	SM00882	Coenzyme A transferase
ATY45_RS19980	SM00893	Electron transfer flavoprotein domain
ATY45_RS19985	SM00893	Electron transfer flavoprotein domain
ATY45_RS19995	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS20050	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_RS20085	SM00487	DEAD-like helicases superfamily
ATY45_RS20085	SM00490	helicase superfamily c-terminal domain
ATY45_RS20110	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_RS20135	SM00825	Beta-ketoacyl synthase
ATY45_RS20235	SM01126	ATY45_RS20235
ATY45_RS20260	SM00830	Chorismate mutase type II
ATY45_RS20270	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS20340	SM00986	Uracil DNA glycosylase superfamily
ATY45_RS20340	SM00987	UreE urease accessory protein, C-terminal domain 
ATY45_RS20365	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS20365	SM00930	ATY45_RS20365
ATY45_RS20445	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_RS20445	SM00091	PAS domain
ATY45_RS20445	SM00387	Histidine kinase-like ATPases
ATY45_RS20445	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS20445	SM00448	cheY-homologous receiver domain
ATY45_RS20465	SM01005	Alanine racemase, C-terminal domain
ATY45_RS20475	SM00344	helix_turn_helix ASNC type
ATY45_RS20520	SM00448	cheY-homologous receiver domain
ATY45_RS20520	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS20525	SM00387	Histidine kinase-like ATPases
ATY45_RS20525	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS20560	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS20580	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATY45_RS20590	SM00986	Uracil DNA glycosylase superfamily
ATY45_RS20590	SM00987	UreE urease accessory protein, C-terminal domain 
ATY45_RS20660	SM00850	LytTr DNA-binding domain
ATY45_RS20665	SM00448	cheY-homologous receiver domain
ATY45_RS20670	SM00387	Histidine kinase-like ATPases
ATY45_RS20685	SM00138	Methyltransferase, chemotaxis proteins 
ATY45_RS20690	SM00448	cheY-homologous receiver domain
ATY45_RS20700	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS20700	SM00448	cheY-homologous receiver domain
ATY45_RS20830	SM01126	ATY45_RS20830
ATY45_RS20885	SM00100	Cyclic nucleotide-monophosphate binding domain
ATY45_RS20885	SM00419	helix_turn_helix, cAMP Regulatory protein
ATY45_RS20905	SM00903	Flavin reductase like domain
ATY45_RS21145	SM00257	Lysin motif
ATY45_RS21170	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ATY45_RS21170	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ATY45_RS21170	SM00493	ATY45_RS21170
ATY45_RS21225	SM00487	DEAD-like helicases superfamily
ATY45_RS21225	SM00490	helicase superfamily c-terminal domain
ATY45_RS21245	SM01126	ATY45_RS21245
ATY45_RS21280	SM00878	Biotin carboxylase C-terminal domain
ATY45_RS21310	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_RS21325	SM01126	ATY45_RS21325
ATY45_RS21370	SM00912	haemagglutination activity domain
ATY45_RS21395	SM01126	ATY45_RS21395
ATY45_RS21425	SM00798	AICARFT/IMPCHase bienzyme
ATY45_RS21425	SM00851	MGS-like domain
ATY45_RS21435	SM01209	ATY45_RS21435
ATY45_RS21435	SM01210	ATY45_RS21435
ATY45_RS21465	SM00563	Phosphate acyltransferases
ATY45_RS21535	SM00052	Putative diguanylate phosphodiesterase
ATY45_RS21535	SM00267	diguanylate cyclase
ATY45_RS21535	SM00448	cheY-homologous receiver domain
ATY45_RS21540	SM00073	Histidine Phosphotransfer domain
ATY45_RS21540	SM00387	Histidine kinase-like ATPases
ATY45_RS21540	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS21540	SM00448	cheY-homologous receiver domain
ATY45_RS21625	SM00470	ParB-like nuclease domain
ATY45_RS21645	SM01259	ATY45_RS21645
ATY45_RS21675	SM00836	DALR anticodon binding domain
ATY45_RS21675	SM01016	Arginyl tRNA synthetase N terminal dom
ATY45_RS21700	SM00090	RIO-like kinase
ATY45_RS21725	SM00998	Adenylosuccinate lyase C-terminus
ATY45_RS21800	SM00881	CoA binding domain
ATY45_RS21810	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_RS21810	SM00924	MgtE intracellular N domain
ATY45_RS21840	SM00226	Low molecular weight phosphatase family
ATY45_RS21845	SM00248	ankyrin repeats
ATY45_RS21855	SM00825	Beta-ketoacyl synthase
ATY45_RS21880	SM00822	ATY45_RS21880
ATY45_RS21895	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_RS21895	SM00876	Biotin and Thiamin Synthesis associated domain
ATY45_RS21940	SM01060	ATY45_RS21940
ATY45_RS21990	SM00849	Metallo-beta-lactamase superfamily
ATY45_RS22080	SM00387	Histidine kinase-like ATPases
ATY45_RS22080	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS22085	SM00448	cheY-homologous receiver domain
ATY45_RS22085	SM00862	Transcriptional regulatory protein, C terminal
ATY45_RS22110	SM00248	ankyrin repeats
ATY45_RS22115	SM01060	ATY45_RS22115
ATY45_RS22130	SM01126	ATY45_RS22130
ATY45_RS22140	SM00491	ATY45_RS22140
ATY45_RS22170	SM00477	DNA/RNA non-specific endonuclease
ATY45_RS22170	SM00892	DNA/RNA non-specific endonuclease
ATY45_RS22190	SM01004	Delta-aminolevulinic acid dehydratase
ATY45_RS22235	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY45_RS22255	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS22265	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_RS22290	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS22340	SM01126	ATY45_RS22340
ATY45_RS22430	SM00563	Phosphate acyltransferases
ATY45_RS22445	SM01321	ATY45_RS22445
ATY45_RS22450	SM01126	ATY45_RS22450
ATY45_RS22480	SM00346	helix_turn_helix isocitrate lyase regulation
ATY45_RS22500	SM00091	PAS domain
ATY45_RS22500	SM00387	Histidine kinase-like ATPases
ATY45_RS22500	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_RS22500	SM00448	cheY-homologous receiver domain
ATY45_RS22530	SM00564	beta-propeller repeat
ATY45_RS22585	SM01126	ATY45_RS22585
ATY45_RS22620	SM01126	ATY45_RS22620
ATY45_RS22635	SM00382	ATPases associated with a variety of cellular activities
ATY45_RS22685	SM01126	ATY45_RS22685
ATY45_RS22690	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATY45_RS22690	SM01232	ATY45_RS22690
ATY45_RS22745	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_RS22745	SM00091	PAS domain
ATY45_RS22805	SM00829	Enoylreductase
ATY45_RS22875	SM00344	helix_turn_helix ASNC type
ATY45_RS22925	SM00829	Enoylreductase
ATY45_RS22955	SM00487	DEAD-like helicases superfamily
ATY45_RS22955	SM00490	helicase superfamily c-terminal domain
ATY45_RS22955	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY45_RS22965	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY45_RS23020	SM00421	helix_turn_helix, Lux Regulon
ATY45_RS23020	SM00448	cheY-homologous receiver domain
ATY45_RS23140	SM00155	Phospholipase D. Active site motifs.
ATY45_RS23165	SM01126	ATY45_RS23165
ATY45_RS23205	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_RS23240	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_RS23240	SM00245	tail specific protease
ATY45_RS23310	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_RS23450	SM00014	Acid phosphatase homologues
ATY45_RS23460	SM00028	Tetratricopeptide repeats
