ATY46_RS00005	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
ATY46_RS00010	SM00480	DNA polymerase III beta subunit
ATY46_RS00020	SM00387	Histidine kinase-like ATPases
ATY46_RS00020	SM00433	TopoisomeraseII
ATY46_RS00035	SM00028	Tetratricopeptide repeats
ATY46_RS00070	SM00155	Phospholipase D. Active site motifs.
ATY46_RS00185	SM01126	ATY46_RS00185
ATY46_RS00210	SM00487	DEAD-like helicases superfamily
ATY46_RS00210	SM00490	helicase superfamily c-terminal domain
ATY46_RS00280	SM01126	ATY46_RS00280
ATY46_RS00315	SM00642	Alpha-amylase domain
ATY46_RS00325	SM00642	Alpha-amylase domain
ATY46_RS00335	SM00642	Alpha-amylase domain
ATY46_RS00340	SM00642	Alpha-amylase domain
ATY46_RS00350	SM00267	diguanylate cyclase
ATY46_RS00435	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS00545	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY46_RS00570	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY46_RS00675	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS00695	SM01126	ATY46_RS00695
ATY46_RS00720	SM00487	DEAD-like helicases superfamily
ATY46_RS00720	SM00490	helicase superfamily c-terminal domain
ATY46_RS00795	SM01126	ATY46_RS00795
ATY46_RS00830	SM00354	helix_turn _helix lactose operon repressor
ATY46_RS00850	SM00642	Alpha-amylase domain
ATY46_RS00855	SM00642	Alpha-amylase domain
ATY46_RS00860	SM00642	Alpha-amylase domain
ATY46_RS00910	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS00920	SM00938	Nitrogen regulatory protein P-II
ATY46_RS01005	SM01228	ATY46_RS01005
ATY46_RS01070	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY46_RS01070	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS01105	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATY46_RS01125	SM00354	helix_turn _helix lactose operon repressor
ATY46_RS01135	SM00563	Phosphate acyltransferases
ATY46_RS01185	SM00344	helix_turn_helix ASNC type
ATY46_RS01240	SM00829	Enoylreductase
ATY46_RS01310	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY46_RS01310	SM00091	PAS domain
ATY46_RS01365	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATY46_RS01365	SM01232	ATY46_RS01365
ATY46_RS01370	SM01126	ATY46_RS01370
ATY46_RS01420	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS01435	SM01126	ATY46_RS01435
ATY46_RS01505	SM00564	beta-propeller repeat
ATY46_RS01545	SM00091	PAS domain
ATY46_RS01545	SM00387	Histidine kinase-like ATPases
ATY46_RS01545	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS01545	SM00448	cheY-homologous receiver domain
ATY46_RS01555	SM00346	helix_turn_helix isocitrate lyase regulation
ATY46_RS01575	SM01126	ATY46_RS01575
ATY46_RS01580	SM01321	ATY46_RS01580
ATY46_RS01600	SM00563	Phosphate acyltransferases
ATY46_RS01700	SM01126	ATY46_RS01700
ATY46_RS01740	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS01765	SM00530	Helix-turn-helix XRE-family like proteins 
ATY46_RS01775	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS01795	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY46_RS01840	SM01004	Delta-aminolevulinic acid dehydratase
ATY46_RS01860	SM00477	DNA/RNA non-specific endonuclease
ATY46_RS01860	SM00892	DNA/RNA non-specific endonuclease
ATY46_RS01890	SM00491	ATY46_RS01890
ATY46_RS01900	SM01126	ATY46_RS01900
ATY46_RS01915	SM01060	ATY46_RS01915
ATY46_RS01920	SM00248	ankyrin repeats
ATY46_RS01945	SM00448	cheY-homologous receiver domain
ATY46_RS01945	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS01950	SM00387	Histidine kinase-like ATPases
ATY46_RS01950	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS02040	SM00849	Metallo-beta-lactamase superfamily
ATY46_RS02090	SM01060	ATY46_RS02090
ATY46_RS02135	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY46_RS02135	SM00876	Biotin and Thiamin Synthesis associated domain
ATY46_RS02150	SM00822	ATY46_RS02150
ATY46_RS02175	SM00825	Beta-ketoacyl synthase
ATY46_RS02185	SM00248	ankyrin repeats
ATY46_RS02190	SM00226	Low molecular weight phosphatase family
ATY46_RS02215	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY46_RS02215	SM00924	MgtE intracellular N domain
ATY46_RS02225	SM00881	CoA binding domain
ATY46_RS02295	SM00998	Adenylosuccinate lyase C-terminus
ATY46_RS02315	SM00346	helix_turn_helix isocitrate lyase regulation
ATY46_RS02320	SM00090	RIO-like kinase
ATY46_RS02345	SM00836	DALR anticodon binding domain
ATY46_RS02345	SM01016	Arginyl tRNA synthetase N terminal dom
ATY46_RS02375	SM01259	ATY46_RS02375
ATY46_RS02395	SM00470	ParB-like nuclease domain
ATY46_RS02480	SM00073	Histidine Phosphotransfer domain
ATY46_RS02480	SM00387	Histidine kinase-like ATPases
ATY46_RS02480	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS02480	SM00448	cheY-homologous receiver domain
ATY46_RS02485	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS02485	SM00267	diguanylate cyclase
ATY46_RS02485	SM00448	cheY-homologous receiver domain
ATY46_RS02555	SM00563	Phosphate acyltransferases
ATY46_RS02585	SM01209	ATY46_RS02585
ATY46_RS02585	SM01210	ATY46_RS02585
ATY46_RS02595	SM00798	AICARFT/IMPCHase bienzyme
ATY46_RS02595	SM00851	MGS-like domain
ATY46_RS02625	SM01126	ATY46_RS02625
ATY46_RS02640	SM00530	Helix-turn-helix XRE-family like proteins 
ATY46_RS02670	SM00878	Biotin carboxylase C-terminal domain
ATY46_RS02705	SM01126	ATY46_RS02705
ATY46_RS02725	SM00487	DEAD-like helicases superfamily
ATY46_RS02725	SM00490	helicase superfamily c-terminal domain
ATY46_RS02785	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ATY46_RS02785	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ATY46_RS02785	SM00493	ATY46_RS02785
ATY46_RS02810	SM00257	Lysin motif
ATY46_RS03015	SM01126	ATY46_RS03015
ATY46_RS03030	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS03110	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS03110	SM00448	cheY-homologous receiver domain
ATY46_RS03120	SM00448	cheY-homologous receiver domain
ATY46_RS03125	SM00138	Methyltransferase, chemotaxis proteins 
ATY46_RS03145	SM00387	Histidine kinase-like ATPases
ATY46_RS03150	SM00448	cheY-homologous receiver domain
ATY46_RS03155	SM00850	LytTr DNA-binding domain
ATY46_RS03225	SM00986	Uracil DNA glycosylase superfamily
ATY46_RS03225	SM00987	UreE urease accessory protein, C-terminal domain 
ATY46_RS03235	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATY46_RS03255	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS03290	SM00387	Histidine kinase-like ATPases
ATY46_RS03290	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS03295	SM00448	cheY-homologous receiver domain
ATY46_RS03295	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS03340	SM00344	helix_turn_helix ASNC type
ATY46_RS03350	SM01005	Alanine racemase, C-terminal domain
ATY46_RS03370	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY46_RS03370	SM00091	PAS domain
ATY46_RS03370	SM00387	Histidine kinase-like ATPases
ATY46_RS03370	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS03370	SM00448	cheY-homologous receiver domain
ATY46_RS03455	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS03455	SM00930	ATY46_RS03455
ATY46_RS03480	SM00986	Uracil DNA glycosylase superfamily
ATY46_RS03480	SM00987	UreE urease accessory protein, C-terminal domain 
ATY46_RS03550	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS03560	SM00830	Chorismate mutase type II
ATY46_RS03585	SM01126	ATY46_RS03585
ATY46_RS03685	SM00825	Beta-ketoacyl synthase
ATY46_RS03710	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY46_RS03735	SM00487	DEAD-like helicases superfamily
ATY46_RS03735	SM00490	helicase superfamily c-terminal domain
ATY46_RS03770	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY46_RS03825	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS03835	SM00893	Electron transfer flavoprotein domain
ATY46_RS03840	SM00893	Electron transfer flavoprotein domain
ATY46_RS03875	SM00882	Coenzyme A transferase
ATY46_RS03880	SM00882	Coenzyme A transferase
ATY46_RS03910	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS03925	SM00528	Domain in histone-like proteins of HNS family
ATY46_RS03980	SM00656	ATY46_RS03980
ATY46_RS04065	SM01211	ATY46_RS04065
ATY46_RS04090	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS04160	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY46_RS04160	SM00866	ATY46_RS04160
ATY46_RS04230	SM00487	DEAD-like helicases superfamily
ATY46_RS04235	SM01126	ATY46_RS04235
ATY46_RS04265	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ATY46_RS04270	SM00822	ATY46_RS04270
ATY46_RS04280	SM00825	Beta-ketoacyl synthase
ATY46_RS04315	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS04405	SM00271	DnaJ molecular chaperone homology domain
ATY46_RS04410	SM00448	cheY-homologous receiver domain
ATY46_RS04415	SM00244	prohibitin homologues
ATY46_RS04420	SM00244	prohibitin homologues
ATY46_RS04430	SM00788	Adenylosuccinate synthetase
ATY46_RS04540	SM01329	ATY46_RS04540
ATY46_RS04545	SM00917	LeuA allosteric (dimerisation) domain
ATY46_RS04580	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS04585	SM00342	helix_turn_helix, arabinose operon control protein
ATY46_RS04620	SM01126	ATY46_RS04620
ATY46_RS04630	SM01126	ATY46_RS04630
ATY46_RS04650	SM00464	Found in ATP-dependent protease La (LON)
ATY46_RS04685	SM00838	Elongation factor G C-terminus
ATY46_RS04765	SM01126	ATY46_RS04765
ATY46_RS04820	SM01126	ATY46_RS04820
ATY46_RS04900	SM01126	ATY46_RS04900
ATY46_RS04905	SM01329	ATY46_RS04905
ATY46_RS04970	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS04970	SM00994	ClpX C4-type zinc finger
ATY46_RS04970	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY46_RS04975	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS04975	SM00464	Found in ATP-dependent protease La (LON)
ATY46_RS04980	SM00411	bacterial (prokaryotic) histone like domain
ATY46_RS05005	SM00257	Lysin motif
ATY46_RS05010	SM00849	Metallo-beta-lactamase superfamily
ATY46_RS05025	SM00479	ATY46_RS05025
ATY46_RS05035	SM00331	Sigma factor PP2C-like phosphatases
ATY46_RS05035	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY46_RS05095	SM01126	ATY46_RS05095
ATY46_RS05120	SM00849	Metallo-beta-lactamase superfamily
ATY46_RS05125	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY46_RS05160	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS05170	SM00493	ATY46_RS05170
ATY46_RS05185	SM00460	Transglutaminase/protease-like homologues
ATY46_RS05195	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS05265	SM00506	Appr-1"-p processing enzyme
ATY46_RS05280	SM00450	Rhodanese Homology Domain
ATY46_RS05315	SM01154	ATY46_RS05315
ATY46_RS05325	SM00642	Alpha-amylase domain
ATY46_RS05345	SM00354	helix_turn _helix lactose operon repressor
ATY46_RS05350	SM00822	ATY46_RS05350
ATY46_RS05365	SM00448	cheY-homologous receiver domain
ATY46_RS05365	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS05370	SM00387	Histidine kinase-like ATPases
ATY46_RS05370	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS05380	SM00421	helix_turn_helix, Lux Regulon
ATY46_RS05380	SM00448	cheY-homologous receiver domain
ATY46_RS05420	SM00387	Histidine kinase-like ATPases
ATY46_RS05420	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS05420	SM00448	cheY-homologous receiver domain
ATY46_RS05440	SM00919	Malic enzyme, NAD binding domain
ATY46_RS05440	SM01274	ATY46_RS05440
ATY46_RS05535	SM01011	Aminopeptidase P, N-terminal domain
ATY46_RS05575	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY46_RS05600	SM00072	Guanylate kinase homologues.
ATY46_RS05615	SM01409	ATY46_RS05615
ATY46_RS05620	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY46_RS05620	SM00954	Region found in RelA / SpoT proteins
ATY46_RS05630	SM00487	DEAD-like helicases superfamily
ATY46_RS05630	SM00490	helicase superfamily c-terminal domain
ATY46_RS05685	SM00965	Secretin and TonB N terminus short domain
ATY46_RS05725	SM00327	von Willebrand factor (vWF) type A domain
ATY46_RS05730	SM00028	Tetratricopeptide repeats
ATY46_RS05730	SM00327	von Willebrand factor (vWF) type A domain
ATY46_RS05755	SM00861	Transketolase, pyrimidine binding domain
ATY46_RS05815	SM00448	cheY-homologous receiver domain
ATY46_RS05815	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS05820	SM00387	Histidine kinase-like ATPases
ATY46_RS05820	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS05840	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS05855	SM00849	Metallo-beta-lactamase superfamily
ATY46_RS05890	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATY46_RS05905	SM01126	ATY46_RS05905
ATY46_RS05910	SM00387	Histidine kinase-like ATPases
ATY46_RS05910	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS05915	SM00448	cheY-homologous receiver domain
ATY46_RS05915	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS06210	SM00422	helix_turn_helix, mercury resistance
ATY46_RS06235	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY46_RS06245	SM00849	Metallo-beta-lactamase superfamily
ATY46_RS06270	SM00421	helix_turn_helix, Lux Regulon
ATY46_RS06310	SM00924	MgtE intracellular N domain
ATY46_RS06355	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS06375	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY46_RS06510	SM00813	Alpha-L-arabinofuranosidase C-terminus
ATY46_RS06530	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS06530	SM00962	SRP54-type protein, GTPase domain
ATY46_RS06530	SM00963	SRP54-type protein, helical bundle domain
ATY46_RS06585	SM00363	S4 RNA-binding domain
ATY46_RS06635	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS06635	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY46_RS06685	SM00855	Phosphoglycerate mutase family
ATY46_RS06775	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS06820	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS06825	SM00342	helix_turn_helix, arabinose operon control protein
ATY46_RS06885	SM01126	ATY46_RS06885
ATY46_RS06925	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS06940	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
ATY46_RS06980	SM00411	bacterial (prokaryotic) histone like domain
ATY46_RS07000	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS07045	SM00732	Likely ribonuclease with RNase H fold.
ATY46_RS07125	SM00267	diguanylate cyclase
ATY46_RS07130	SM00829	Enoylreductase
ATY46_RS07145	SM01126	ATY46_RS07145
ATY46_RS07260	SM00855	Phosphoglycerate mutase family
ATY46_RS07285	SM00448	cheY-homologous receiver domain
ATY46_RS07290	SM00138	Methyltransferase, chemotaxis proteins 
ATY46_RS07295	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS07295	SM00448	cheY-homologous receiver domain
ATY46_RS07300	SM00260	Two component signalling adaptor domain
ATY46_RS07305	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY46_RS07305	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS07310	SM00073	Histidine Phosphotransfer domain
ATY46_RS07310	SM00260	Two component signalling adaptor domain
ATY46_RS07310	SM00387	Histidine kinase-like ATPases
ATY46_RS07310	SM01231	ATY46_RS07310
ATY46_RS07320	SM00487	DEAD-like helicases superfamily
ATY46_RS07320	SM00490	helicase superfamily c-terminal domain
ATY46_RS07320	SM00982	ATY46_RS07320
ATY46_RS07320	SM01058	CarD-like/TRCF domain
ATY46_RS07345	SM00387	Histidine kinase-like ATPases
ATY46_RS07345	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS07360	SM00645	Papain family cysteine protease
ATY46_RS07380	SM00645	Papain family cysteine protease
ATY46_RS07395	SM00645	Papain family cysteine protease
ATY46_RS07455	SM00357	Cold shock protein domain
ATY46_RS07585	SM00829	Enoylreductase
ATY46_RS07605	SM00342	helix_turn_helix, arabinose operon control protein
ATY46_RS07605	SM00478	endonuclease III
ATY46_RS07605	SM01009	AlkA N-terminal domain
ATY46_RS07650	SM00487	DEAD-like helicases superfamily
ATY46_RS07650	SM00490	helicase superfamily c-terminal domain
ATY46_RS07655	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS07655	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY46_RS07655	SM00091	PAS domain
ATY46_RS07655	SM00267	diguanylate cyclase
ATY46_RS07660	SM00363	S4 RNA-binding domain
ATY46_RS07695	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS07695	SM00387	Histidine kinase-like ATPases
ATY46_RS07695	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS07700	SM00448	cheY-homologous receiver domain
ATY46_RS07700	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS07730	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS07840	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS07840	SM00448	cheY-homologous receiver domain
ATY46_RS07845	SM00387	Histidine kinase-like ATPases
ATY46_RS07845	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS07855	SM00881	CoA binding domain
ATY46_RS08025	SM00904	Riboflavin kinase
ATY46_RS08070	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY46_RS08120	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ATY46_RS08120	SM00534	ATPase domain of DNA mismatch repair MUTS family
ATY46_RS08145	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS08185	SM00834	Putative regulatory protein
ATY46_RS08220	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY46_RS08230	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS08410	SM00530	Helix-turn-helix XRE-family like proteins 
ATY46_RS08580	SM00448	cheY-homologous receiver domain
ATY46_RS08590	SM00341	Helicase and RNase D C-terminal
ATY46_RS08590	SM00487	DEAD-like helicases superfamily
ATY46_RS08590	SM00490	helicase superfamily c-terminal domain
ATY46_RS08590	SM00956	ATY46_RS08590
ATY46_RS08600	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS08600	SM00487	DEAD-like helicases superfamily
ATY46_RS08600	SM00490	helicase superfamily c-terminal domain
ATY46_RS08600	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY46_RS08665	SM00954	Region found in RelA / SpoT proteins
ATY46_RS08690	SM00491	ATY46_RS08690
ATY46_RS08715	SM00448	cheY-homologous receiver domain
ATY46_RS08720	SM00448	cheY-homologous receiver domain
ATY46_RS08725	SM00260	Two component signalling adaptor domain
ATY46_RS08730	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY46_RS08735	SM00073	Histidine Phosphotransfer domain
ATY46_RS08735	SM00260	Two component signalling adaptor domain
ATY46_RS08735	SM00387	Histidine kinase-like ATPases
ATY46_RS08735	SM00448	cheY-homologous receiver domain
ATY46_RS08735	SM01231	ATY46_RS08735
ATY46_RS08745	SM00260	Two component signalling adaptor domain
ATY46_RS08765	SM00327	von Willebrand factor (vWF) type A domain
ATY46_RS08790	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY46_RS08845	SM01149	ATY46_RS08845
ATY46_RS08900	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS08905	SM00758	ATY46_RS08905
ATY46_RS08905	SM01217	ATY46_RS08905
ATY46_RS08925	SM00636	ATY46_RS08925
ATY46_RS08930	SM00812	Alpha-L-fucosidase
ATY46_RS08980	SM00244	prohibitin homologues
ATY46_RS09060	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY46_RS09110	SM00867	YceI-like domain 
ATY46_RS09120	SM00867	YceI-like domain 
ATY46_RS09125	SM00387	Histidine kinase-like ATPases
ATY46_RS09125	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS09125	SM00448	cheY-homologous receiver domain
ATY46_RS09130	SM00387	Histidine kinase-like ATPases
ATY46_RS09130	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS09130	SM00448	cheY-homologous receiver domain
ATY46_RS09135	SM00387	Histidine kinase-like ATPases
ATY46_RS09135	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS09135	SM00448	cheY-homologous receiver domain
ATY46_RS09155	SM00812	Alpha-L-fucosidase
ATY46_RS09180	SM00530	Helix-turn-helix XRE-family like proteins 
ATY46_RS09230	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY46_RS09235	SM00838	Elongation factor G C-terminus
ATY46_RS09250	SM00358	Double-stranded RNA binding motif
ATY46_RS09250	SM00535	Ribonuclease III family
ATY46_RS09265	SM00448	cheY-homologous receiver domain
ATY46_RS09275	SM01118	ATY46_RS09275
ATY46_RS09330	SM00357	Cold shock protein domain
ATY46_RS09355	SM00487	DEAD-like helicases superfamily
ATY46_RS09355	SM00490	helicase superfamily c-terminal domain
ATY46_RS09385	SM00267	diguanylate cyclase
ATY46_RS09405	SM00869	Autotransporter beta-domain
ATY46_RS09410	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATY46_RS09780	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS09800	SM00481	DNA polymerase alpha chain like domain
ATY46_RS09835	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY46_RS09890	SM00972	Spore Coat Protein U domain
ATY46_RS09905	SM00972	Spore Coat Protein U domain
ATY46_RS09915	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY46_RS09945	SM01172	ATY46_RS09945
ATY46_RS09950	SM00710	Parallel beta-helix repeats
ATY46_RS09950	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
ATY46_RS09975	SM00434	DNA Topoisomerase IV
ATY46_RS09985	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY46_RS10030	SM01126	ATY46_RS10030
ATY46_RS10060	SM00861	Transketolase, pyrimidine binding domain
ATY46_RS10065	SM00507	HNH nucleases
ATY46_RS10135	SM00271	DnaJ molecular chaperone homology domain
ATY46_RS10170	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS10195	SM00861	Transketolase, pyrimidine binding domain
ATY46_RS10205	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY46_RS10215	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY46_RS10300	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS10305	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY46_RS10320	SM00984	UDP binding domain
ATY46_RS10340	SM00354	helix_turn _helix lactose operon repressor
ATY46_RS10360	SM01018	B12 binding domain
ATY46_RS10370	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATY46_RS10400	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY46_RS10400	SM00357	Cold shock protein domain
ATY46_RS10400	SM00955	ATY46_RS10400
ATY46_RS10425	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY46_RS10445	SM01126	ATY46_RS10445
ATY46_RS10495	SM01126	ATY46_RS10495
ATY46_RS10515	SM01126	ATY46_RS10515
ATY46_RS10680	SM01007	Class II Aldolase and Adducin N-terminal domain
ATY46_RS10765	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS10780	SM01126	ATY46_RS10780
ATY46_RS10795	SM00363	S4 RNA-binding domain
ATY46_RS10820	SM00354	helix_turn _helix lactose operon repressor
ATY46_RS10895	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY46_RS10900	SM00411	bacterial (prokaryotic) histone like domain
ATY46_RS10920	SM00822	ATY46_RS10920
ATY46_RS10970	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY46_RS10970	SM01240	ATY46_RS10970
ATY46_RS11030	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS11040	SM00529	Helix-turn-helix diphteria tox regulatory element
ATY46_RS11050	SM00479	ATY46_RS11050
ATY46_RS11135	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY46_RS11135	SM00732	Likely ribonuclease with RNase H fold.
ATY46_RS11150	SM00448	cheY-homologous receiver domain
ATY46_RS11155	SM00387	Histidine kinase-like ATPases
ATY46_RS11165	SM00014	Acid phosphatase homologues
ATY46_RS11265	SM00419	helix_turn_helix, cAMP Regulatory protein
ATY46_RS11640	SM01126	ATY46_RS11640
ATY46_RS11685	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY46_RS11685	SM00465	GIY-YIG type nucleases (URI domain)
ATY46_RS11695	SM00226	Low molecular weight phosphatase family
ATY46_RS11725	SM00849	Metallo-beta-lactamase superfamily
ATY46_RS11730	SM01126	ATY46_RS11730
ATY46_RS11740	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS11795	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS11850	SM00448	cheY-homologous receiver domain
ATY46_RS11855	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY46_RS11855	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY46_RS11855	SM00091	PAS domain
ATY46_RS11855	SM00387	Histidine kinase-like ATPases
ATY46_RS11855	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS11855	SM00448	cheY-homologous receiver domain
ATY46_RS11885	SM00267	diguanylate cyclase
ATY46_RS11935	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS11980	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY46_RS12010	SM00631	ATY46_RS12010
ATY46_RS12015	SM01217	ATY46_RS12015
ATY46_RS12030	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS12030	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY46_RS12030	SM00267	diguanylate cyclase
ATY46_RS12105	SM00646	ATY46_RS12105
ATY46_RS12135	SM00869	Autotransporter beta-domain
ATY46_RS12155	SM00387	Histidine kinase-like ATPases
ATY46_RS12155	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS12160	SM00421	helix_turn_helix, Lux Regulon
ATY46_RS12160	SM00448	cheY-homologous receiver domain
ATY46_RS12165	SM00869	Autotransporter beta-domain
ATY46_RS12185	SM00830	Chorismate mutase type II
ATY46_RS12205	SM00240	Forkhead associated domain
ATY46_RS12225	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY46_RS12225	SM00866	ATY46_RS12225
ATY46_RS12275	SM00434	DNA Topoisomerase IV
ATY46_RS12300	SM00292	breast cancer carboxy-terminal domain
ATY46_RS12300	SM00532	Ligase N family
ATY46_RS12310	SM00771	ZipA, C-terminal domain (FtsZ-binding)
ATY46_RS12315	SM00968	SMC proteins Flexible Hinge Domain
ATY46_RS12370	SM00947	Carbonic anhydrase
ATY46_RS12395	SM00479	ATY46_RS12395
ATY46_RS12430	SM00981	ATY46_RS12430
ATY46_RS12445	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS12465	SM00644	ATY46_RS12465
ATY46_RS12475	SM00450	Rhodanese Homology Domain
ATY46_RS12500	SM00478	endonuclease III
ATY46_RS12510	SM00947	Carbonic anhydrase
ATY46_RS12565	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS12580	SM00479	ATY46_RS12580
ATY46_RS12635	SM01323	ATY46_RS12635
ATY46_RS12650	SM00344	helix_turn_helix ASNC type
ATY46_RS12765	SM00387	Histidine kinase-like ATPases
ATY46_RS12785	SM00450	Rhodanese Homology Domain
ATY46_RS12795	SM01126	ATY46_RS12795
ATY46_RS12865	SM00852	Probable molybdopterin binding domain
ATY46_RS12870	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS12875	SM00564	beta-propeller repeat
ATY46_RS12890	SM00028	Tetratricopeptide repeats
ATY46_RS12900	SM00562	ATY46_RS12900
ATY46_RS12940	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS12960	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS12960	SM00843	ATY46_RS12960
ATY46_RS12990	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY46_RS12995	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS12995	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY46_RS13020	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY46_RS13035	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS13035	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY46_RS13035	SM00091	PAS domain
ATY46_RS13035	SM00267	diguanylate cyclase
ATY46_RS13040	SM00091	PAS domain
ATY46_RS13040	SM00387	Histidine kinase-like ATPases
ATY46_RS13045	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS13045	SM00267	diguanylate cyclase
ATY46_RS13045	SM00448	cheY-homologous receiver domain
ATY46_RS13050	SM00387	Histidine kinase-like ATPases
ATY46_RS13065	SM00858	ATY46_RS13065
ATY46_RS13070	SM00260	Two component signalling adaptor domain
ATY46_RS13070	SM00448	cheY-homologous receiver domain
ATY46_RS13115	SM00047	Lysozyme subfamily 2
ATY46_RS13155	SM00421	helix_turn_helix, Lux Regulon
ATY46_RS13155	SM00448	cheY-homologous receiver domain
ATY46_RS13165	SM00448	cheY-homologous receiver domain
ATY46_RS13170	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS13190	SM00822	ATY46_RS13190
ATY46_RS13195	SM00822	ATY46_RS13195
ATY46_RS13245	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS13295	SM00267	diguanylate cyclase
ATY46_RS13300	SM00267	diguanylate cyclase
ATY46_RS13305	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS13305	SM00267	diguanylate cyclase
ATY46_RS13320	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS13320	SM00962	SRP54-type protein, GTPase domain
ATY46_RS13335	SM00448	cheY-homologous receiver domain
ATY46_RS13345	SM00073	Histidine Phosphotransfer domain
ATY46_RS13345	SM00260	Two component signalling adaptor domain
ATY46_RS13345	SM00387	Histidine kinase-like ATPases
ATY46_RS13345	SM01231	ATY46_RS13345
ATY46_RS13485	SM01126	ATY46_RS13485
ATY46_RS13500	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS13540	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
ATY46_RS13550	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ATY46_RS13570	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY46_RS13610	SM00840	ATY46_RS13610
ATY46_RS13625	SM00245	tail specific protease
ATY46_RS13640	SM01234	ATY46_RS13640
ATY46_RS13745	SM00841	Elongation factor P, C-terminal
ATY46_RS13745	SM01185	ATY46_RS13745
ATY46_RS13755	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS13755	SM00267	diguanylate cyclase
ATY46_RS13755	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS13800	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS13805	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS13805	SM00487	DEAD-like helicases superfamily
ATY46_RS13805	SM00490	helicase superfamily c-terminal domain
ATY46_RS13830	SM00357	Cold shock protein domain
ATY46_RS13840	SM01322	ATY46_RS13840
ATY46_RS13850	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS13850	SM00267	diguanylate cyclase
ATY46_RS13865	SM00822	ATY46_RS13865
ATY46_RS13885	SM00853	MutL C terminal dimerisation domain
ATY46_RS13885	SM01340	ATY46_RS13885
ATY46_RS13890	SM00646	ATY46_RS13890
ATY46_RS13945	SM00474	3'-5' exonuclease
ATY46_RS13960	SM00528	Domain in histone-like proteins of HNS family
ATY46_RS13995	SM01126	ATY46_RS13995
ATY46_RS14070	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY46_RS14095	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY46_RS14095	SM01091	Transporter associated domain
ATY46_RS14130	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS14155	SM01230	ATY46_RS14155
ATY46_RS14165	SM01230	ATY46_RS14165
ATY46_RS14175	SM00267	diguanylate cyclase
ATY46_RS14175	SM00448	cheY-homologous receiver domain
ATY46_RS14230	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY46_RS14230	SM00091	PAS domain
ATY46_RS14230	SM00387	Histidine kinase-like ATPases
ATY46_RS14230	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS14230	SM00448	cheY-homologous receiver domain
ATY46_RS14230	SM01079	ATY46_RS14230
ATY46_RS14235	SM00448	cheY-homologous receiver domain
ATY46_RS14235	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY46_RS14270	SM01126	ATY46_RS14270
ATY46_RS14280	SM00354	helix_turn _helix lactose operon repressor
ATY46_RS14420	SM01022	ATY46_RS14420
ATY46_RS14490	SM00260	Two component signalling adaptor domain
ATY46_RS14500	SM00448	cheY-homologous receiver domain
ATY46_RS14505	SM00073	Histidine Phosphotransfer domain
ATY46_RS14505	SM00260	Two component signalling adaptor domain
ATY46_RS14505	SM00387	Histidine kinase-like ATPases
ATY46_RS14505	SM01231	ATY46_RS14505
ATY46_RS14530	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY46_RS14535	SM01126	ATY46_RS14535
ATY46_RS14540	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY46_RS14540	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS14550	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY46_RS14550	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS14555	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY46_RS14555	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS14560	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY46_RS14560	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS14565	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY46_RS14565	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS14580	SM00260	Two component signalling adaptor domain
ATY46_RS14605	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY46_RS14605	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS14610	SM00138	Methyltransferase, chemotaxis proteins 
ATY46_RS14620	SM00448	cheY-homologous receiver domain
ATY46_RS14625	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS14625	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY46_RS14625	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY46_RS14625	SM00091	PAS domain
ATY46_RS14625	SM00267	diguanylate cyclase
ATY46_RS14650	SM00966	SpoVT / AbrB like domain 
ATY46_RS14675	SM00073	Histidine Phosphotransfer domain
ATY46_RS14675	SM00387	Histidine kinase-like ATPases
ATY46_RS14675	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS14675	SM00448	cheY-homologous receiver domain
ATY46_RS14685	SM00448	cheY-homologous receiver domain
ATY46_RS14685	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY46_RS14695	SM00937	ATY46_RS14695
ATY46_RS14700	SM00850	LytTr DNA-binding domain
ATY46_RS14740	SM00851	MGS-like domain
ATY46_RS14740	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATY46_RS14750	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ATY46_RS14800	SM00899	ATY46_RS14800
ATY46_RS14820	SM00822	ATY46_RS14820
ATY46_RS14825	SM00841	Elongation factor P, C-terminal
ATY46_RS14825	SM01185	ATY46_RS14825
ATY46_RS14875	SM00758	ATY46_RS14875
ATY46_RS14895	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY46_RS14920	SM01130	ATY46_RS14920
ATY46_RS14940	SM00670	Large family of predicted nucleotide-binding domains
ATY46_RS15035	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY46_RS15045	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS15085	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS15095	SM01103	ATY46_RS15095
ATY46_RS15105	SM00257	Lysin motif
ATY46_RS15125	SM00463	Small MutS-related domain
ATY46_RS15155	SM01192	ATY46_RS15155
ATY46_RS15155	SM01193	ATY46_RS15155
ATY46_RS15180	SM00387	Histidine kinase-like ATPases
ATY46_RS15180	SM00433	TopoisomeraseII
ATY46_RS15215	SM01091	Transporter associated domain
ATY46_RS15250	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS15260	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY46_RS15500	SM00448	cheY-homologous receiver domain
ATY46_RS15500	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS15510	SM00387	Histidine kinase-like ATPases
ATY46_RS15550	SM00331	Sigma factor PP2C-like phosphatases
ATY46_RS15550	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY46_RS15575	SM00240	Forkhead associated domain
ATY46_RS15610	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS15610	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY46_RS15740	SM00363	S4 RNA-binding domain
ATY46_RS15745	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY46_RS15760	SM00421	helix_turn_helix, Lux Regulon
ATY46_RS15760	SM00448	cheY-homologous receiver domain
ATY46_RS15765	SM00450	Rhodanese Homology Domain
ATY46_RS15790	SM00984	UDP binding domain
ATY46_RS15840	SM01126	ATY46_RS15840
ATY46_RS15850	SM01126	ATY46_RS15850
ATY46_RS15860	SM01012	ATY46_RS15860
ATY46_RS15900	SM00852	Probable molybdopterin binding domain
ATY46_RS15995	SM00944	Pro-kumamolisin, activation domain
ATY46_RS16060	SM01130	ATY46_RS16060
ATY46_RS16085	SM00342	helix_turn_helix, arabinose operon control protein
ATY46_RS16090	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS16090	SM00962	SRP54-type protein, GTPase domain
ATY46_RS16090	SM00963	SRP54-type protein, helical bundle domain
ATY46_RS16105	SM00478	endonuclease III
ATY46_RS16115	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY46_RS16115	SM00091	PAS domain
ATY46_RS16115	SM00387	Histidine kinase-like ATPases
ATY46_RS16115	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS16115	SM00448	cheY-homologous receiver domain
ATY46_RS16150	SM01126	ATY46_RS16150
ATY46_RS16300	SM00422	helix_turn_helix, mercury resistance
ATY46_RS16305	SM00411	bacterial (prokaryotic) histone like domain
ATY46_RS16310	SM00873	B3/4 domain
ATY46_RS16310	SM00874	tRNA synthetase B5 domain
ATY46_RS16310	SM00896	Ferredoxin-fold anticodon binding domain
ATY46_RS16335	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY46_RS16365	SM00487	DEAD-like helicases superfamily
ATY46_RS16365	SM00490	helicase superfamily c-terminal domain
ATY46_RS16450	SM01001	AIR carboxylase
ATY46_RS16470	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY46_RS16470	SM00322	K homology RNA-binding domain
ATY46_RS16475	SM01387	ATY46_RS16475
ATY46_RS16495	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY46_RS16495	SM00322	K homology RNA-binding domain
ATY46_RS16545	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
ATY46_RS16550	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
ATY46_RS16595	SM00822	ATY46_RS16595
ATY46_RS16630	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS16630	SM00267	diguanylate cyclase
ATY46_RS16630	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS16700	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY46_RS16735	SM00257	Lysin motif
ATY46_RS16765	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY46_RS16805	SM01160	ATY46_RS16805
ATY46_RS16815	SM01126	ATY46_RS16815
ATY46_RS16865	SM00098	Alkaline phosphatase homologues
ATY46_RS16870	SM00977	TilS substrate C-terminal domain
ATY46_RS16920	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY46_RS17010	SM01126	ATY46_RS17010
ATY46_RS17060	SM01126	ATY46_RS17060
ATY46_RS17075	SM00642	Alpha-amylase domain
ATY46_RS17120	SM00528	Domain in histone-like proteins of HNS family
ATY46_RS17160	SM01126	ATY46_RS17160
ATY46_RS17170	SM00869	Autotransporter beta-domain
ATY46_RS17250	SM01126	ATY46_RS17250
ATY46_RS17260	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY46_RS17280	SM01126	ATY46_RS17280
ATY46_RS17345	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY46_RS17345	SM00387	Histidine kinase-like ATPases
ATY46_RS17445	SM01060	ATY46_RS17445
ATY46_RS17470	SM01126	ATY46_RS17470
ATY46_RS17485	SM00091	PAS domain
ATY46_RS17485	SM00342	helix_turn_helix, arabinose operon control protein
ATY46_RS17555	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY46_RS17560	SM00481	DNA polymerase alpha chain like domain
ATY46_RS17580	SM00966	SpoVT / AbrB like domain 
ATY46_RS17605	SM00855	Phosphoglycerate mutase family
ATY46_RS17635	SM00220	Serine/Threonine protein kinases, catalytic domain
ATY46_RS17645	SM00487	DEAD-like helicases superfamily
ATY46_RS17700	SM00487	DEAD-like helicases superfamily
ATY46_RS17700	SM00490	helicase superfamily c-terminal domain
ATY46_RS17795	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS17795	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY46_RS18055	SM00478	endonuclease III
ATY46_RS18070	SM00421	helix_turn_helix, Lux Regulon
ATY46_RS18070	SM00448	cheY-homologous receiver domain
ATY46_RS18105	SM00387	Histidine kinase-like ATPases
ATY46_RS18105	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS18110	SM00448	cheY-homologous receiver domain
ATY46_RS18110	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS18145	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS18175	SM00990	ATY46_RS18175
ATY46_RS18230	SM00662	RNA polymerases D
ATY46_RS18235	SM00363	S4 RNA-binding domain
ATY46_RS18235	SM01390	ATY46_RS18235
ATY46_RS18295	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY46_RS18300	SM01374	ATY46_RS18300
ATY46_RS18320	SM00322	K homology RNA-binding domain
ATY46_RS18335	SM01382	ATY46_RS18335
ATY46_RS18335	SM01383	ATY46_RS18335
ATY46_RS18355	SM01403	ATY46_RS18355
ATY46_RS18375	SM00838	Elongation factor G C-terminus
ATY46_RS18375	SM00889	Elongation factor G, domain IV
ATY46_RS18390	SM00663	RNA polymerase I subunit A N-terminus
ATY46_RS18415	SM00649	Ribosomal protein L11/L12
ATY46_RS18420	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ATY46_RS18420	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY46_RS18470	SM01400	ATY46_RS18470
ATY46_RS18490	SM00028	Tetratricopeptide repeats
ATY46_RS18500	SM00937	ATY46_RS18500
ATY46_RS18505	SM00028	Tetratricopeptide repeats
ATY46_RS18510	SM00852	Probable molybdopterin binding domain
ATY46_RS18630	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATY46_RS18630	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATY46_RS18645	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY46_RS18645	SM00475	5'-3' exonuclease
ATY46_RS18720	SM01126	ATY46_RS18720
ATY46_RS18780	SM00448	cheY-homologous receiver domain
ATY46_RS18780	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS18785	SM00387	Histidine kinase-like ATPases
ATY46_RS18785	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS18805	SM00014	Acid phosphatase homologues
ATY46_RS18855	SM00855	Phosphoglycerate mutase family
ATY46_RS18875	SM00829	Enoylreductase
ATY46_RS18885	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS18930	SM00829	Enoylreductase
ATY46_RS18975	SM00387	Histidine kinase-like ATPases
ATY46_RS18975	SM00448	cheY-homologous receiver domain
ATY46_RS18980	SM00448	cheY-homologous receiver domain
ATY46_RS19085	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY46_RS19130	SM01126	ATY46_RS19130
ATY46_RS19190	SM00650	Ribosomal RNA adenine dimethylases
ATY46_RS19255	SM00387	Histidine kinase-like ATPases
ATY46_RS19255	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS19260	SM00448	cheY-homologous receiver domain
ATY46_RS19260	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS19270	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS19290	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS19425	SM00996	S-adenosyl-L-homocysteine hydrolase
ATY46_RS19425	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ATY46_RS19485	SM00829	Enoylreductase
ATY46_RS19520	SM00957	SecA DEAD-like domain
ATY46_RS19520	SM00958	SecA preprotein cross-linking domain
ATY46_RS19540	SM00864	Tubulin/FtsZ family, GTPase domain
ATY46_RS19540	SM00865	Tubulin/FtsZ family, C-terminal domain
ATY46_RS19545	SM00842	Cell division protein FtsA
ATY46_RS19650	SM00448	cheY-homologous receiver domain
ATY46_RS19650	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS19655	SM00387	Histidine kinase-like ATPases
ATY46_RS19655	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS19765	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS19795	SM00829	Enoylreductase
ATY46_RS19810	SM00448	cheY-homologous receiver domain
ATY46_RS19810	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS19815	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS19815	SM00387	Histidine kinase-like ATPases
ATY46_RS19815	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS19960	SM01126	ATY46_RS19960
ATY46_RS20000	SM01126	ATY46_RS20000
ATY46_RS20045	SM00354	helix_turn _helix lactose operon repressor
ATY46_RS20055	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY46_RS20055	SM00866	ATY46_RS20055
ATY46_RS20110	SM00387	Histidine kinase-like ATPases
ATY46_RS20110	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS20110	SM00448	cheY-homologous receiver domain
ATY46_RS20115	SM00448	cheY-homologous receiver domain
ATY46_RS20120	SM00387	Histidine kinase-like ATPases
ATY46_RS20120	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS20125	SM00749	bacterial OsmY and nodulation domain
ATY46_RS20135	SM01350	ATY46_RS20135
ATY46_RS20185	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY46_RS20185	SM00245	tail specific protease
ATY46_RS20190	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY46_RS20210	SM00936	Penicillin-binding protein 5, C-terminal domain 
ATY46_RS20335	SM00267	diguanylate cyclase
ATY46_RS20340	SM01263	ATY46_RS20340
ATY46_RS20355	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS20355	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY46_RS20445	SM00448	cheY-homologous receiver domain
ATY46_RS20445	SM00850	LytTr DNA-binding domain
ATY46_RS20475	SM00267	diguanylate cyclase
ATY46_RS20490	SM00637	ATY46_RS20490
ATY46_RS20510	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY46_RS20510	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY46_RS20510	SM00091	PAS domain
ATY46_RS20510	SM00267	diguanylate cyclase
ATY46_RS20520	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY46_RS20590	SM00060	Fibronectin type 3 domain
ATY46_RS20700	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATY46_RS20715	SM00271	DnaJ molecular chaperone homology domain
ATY46_RS20815	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY46_RS20845	SM00861	Transketolase, pyrimidine binding domain
ATY46_RS20850	SM01126	ATY46_RS20850
ATY46_RS20965	SM00644	ATY46_RS20965
ATY46_RS20975	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY46_RS21005	SM01126	ATY46_RS21005
ATY46_RS21085	SM01126	ATY46_RS21085
ATY46_RS21095	SM01126	ATY46_RS21095
ATY46_RS21105	SM01217	ATY46_RS21105
ATY46_RS21110	SM00905	Dihydroneopterin aldolase
ATY46_RS21140	SM00400	zinc finger
ATY46_RS21140	SM00493	ATY46_RS21140
ATY46_RS21140	SM00766	DNA primase DnaG DnaB-binding
ATY46_RS21235	SM01126	ATY46_RS21235
ATY46_RS21290	SM00100	Cyclic nucleotide-monophosphate binding domain
ATY46_RS21290	SM00419	helix_turn_helix, cAMP Regulatory protein
ATY46_RS21310	SM00903	Flavin reductase like domain
ATY46_RS21435	SM01150	ATY46_RS21435
ATY46_RS21445	SM01126	ATY46_RS21445
ATY46_RS21450	SM01126	ATY46_RS21450
ATY46_RS21465	SM00450	Rhodanese Homology Domain
ATY46_RS21490	SM00387	Histidine kinase-like ATPases
ATY46_RS21490	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS21495	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS21495	SM00448	cheY-homologous receiver domain
ATY46_RS21580	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY46_RS21585	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY46_RS21600	SM01126	ATY46_RS21600
ATY46_RS21675	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY46_RS21675	SM00474	3'-5' exonuclease
ATY46_RS21675	SM00475	5'-3' exonuclease
ATY46_RS21675	SM00482	DNA polymerase A domain
ATY46_RS21760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY46_RS21760	SM00331	Sigma factor PP2C-like phosphatases
ATY46_RS21775	SM00867	YceI-like domain 
ATY46_RS21805	SM00944	Pro-kumamolisin, activation domain
ATY46_RS21850	SM01126	ATY46_RS21850
ATY46_RS21900	SM00883	Chaperonin 10 Kd subunit
ATY46_RS21945	SM00986	Uracil DNA glycosylase superfamily
ATY46_RS21945	SM00987	UreE urease accessory protein, C-terminal domain 
ATY46_RS21950	SM00448	cheY-homologous receiver domain
ATY46_RS21960	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS21965	SM00487	DEAD-like helicases superfamily
ATY46_RS21965	SM00490	helicase superfamily c-terminal domain
ATY46_RS21975	SM00357	Cold shock protein domain
ATY46_RS21975	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS21975	SM00959	Rho termination factor, N-terminal domain
ATY46_RS22040	SM00563	Phosphate acyltransferases
ATY46_RS22160	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS22165	SM00387	Histidine kinase-like ATPases
ATY46_RS22170	SM00448	cheY-homologous receiver domain
ATY46_RS22170	SM00862	Transcriptional regulatory protein, C terminal
ATY46_RS22260	SM01126	ATY46_RS22260
ATY46_RS22360	SM00878	Biotin carboxylase C-terminal domain
ATY46_RS22430	SM00833	Cobalamin synthesis protein cobW C-terminal domain
ATY46_RS22475	SM00836	DALR anticodon binding domain
ATY46_RS22485	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS22570	SM00354	helix_turn _helix lactose operon repressor
ATY46_RS22585	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY46_RS22595	SM00758	ATY46_RS22595
ATY46_RS22595	SM01217	ATY46_RS22595
ATY46_RS22625	SM00633	Glycosyl hydrolase family 10
ATY46_RS22630	SM00633	Glycosyl hydrolase family 10
ATY46_RS22680	SM01126	ATY46_RS22680
ATY46_RS22700	SM00052	Putative diguanylate phosphodiesterase
ATY46_RS22755	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY46_RS22790	SM00530	Helix-turn-helix XRE-family like proteins 
ATY46_RS22840	SM00530	Helix-turn-helix XRE-family like proteins 
ATY46_RS22910	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS22910	SM00448	cheY-homologous receiver domain
ATY46_RS22915	SM00387	Histidine kinase-like ATPases
ATY46_RS22915	SM00388	His Kinase A (phosphoacceptor) domain
ATY46_RS22925	SM00938	Nitrogen regulatory protein P-II
ATY46_RS22930	SM01230	ATY46_RS22930
ATY46_RS22955	SM00028	Tetratricopeptide repeats
ATY46_RS22970	SM00563	Phosphate acyltransferases
ATY46_RS22980	SM00155	Phospholipase D. Active site motifs.
ATY46_RS22985	SM00867	YceI-like domain 
ATY46_RS22990	SM00855	Phosphoglycerate mutase family
ATY46_RS23015	SM00530	Helix-turn-helix XRE-family like proteins 
ATY46_RS23045	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS23060	SM00382	ATPases associated with a variety of cellular activities
ATY46_RS23075	SM01126	ATY46_RS23075
ATY46_RS23115	SM00829	Enoylreductase
ATY46_RS23145	SM00487	DEAD-like helicases superfamily
ATY46_RS23145	SM00490	helicase superfamily c-terminal domain
ATY46_RS23145	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY46_RS23155	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY46_RS23210	SM00421	helix_turn_helix, Lux Regulon
ATY46_RS23210	SM00448	cheY-homologous receiver domain
ATY46_RS23335	SM00155	Phospholipase D. Active site motifs.
ATY46_RS23360	SM01126	ATY46_RS23360
ATY46_RS23405	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY46_RS23440	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY46_RS23440	SM00245	tail specific protease
ATY46_RS23515	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY46_RS23570	SM01126	ATY46_RS23570
ATY46_RS23660	SM00014	Acid phosphatase homologues
ATY46_RS23670	SM00028	Tetratricopeptide repeats
