ATY47_RS00005	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
ATY47_RS00010	SM00480	DNA polymerase III beta subunit
ATY47_RS00020	SM00387	Histidine kinase-like ATPases
ATY47_RS00020	SM00433	TopoisomeraseII
ATY47_RS00035	SM00028	Tetratricopeptide repeats
ATY47_RS00070	SM00155	Phospholipase D. Active site motifs.
ATY47_RS00155	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS00180	SM01126	ATY47_RS00180
ATY47_RS00205	SM00487	DEAD-like helicases superfamily
ATY47_RS00205	SM00490	helicase superfamily c-terminal domain
ATY47_RS00275	SM01126	ATY47_RS00275
ATY47_RS00305	SM00642	Alpha-amylase domain
ATY47_RS00315	SM00642	Alpha-amylase domain
ATY47_RS00325	SM00642	Alpha-amylase domain
ATY47_RS00330	SM00642	Alpha-amylase domain
ATY47_RS00340	SM00267	diguanylate cyclase
ATY47_RS00425	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS00535	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY47_RS00560	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY47_RS00660	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS00680	SM01126	ATY47_RS00680
ATY47_RS00705	SM00487	DEAD-like helicases superfamily
ATY47_RS00705	SM00490	helicase superfamily c-terminal domain
ATY47_RS00780	SM01126	ATY47_RS00780
ATY47_RS00835	SM00354	helix_turn _helix lactose operon repressor
ATY47_RS00855	SM00642	Alpha-amylase domain
ATY47_RS00860	SM00642	Alpha-amylase domain
ATY47_RS00865	SM00642	Alpha-amylase domain
ATY47_RS00915	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS00925	SM00938	Nitrogen regulatory protein P-II
ATY47_RS01010	SM01228	ATY47_RS01010
ATY47_RS01075	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY47_RS01075	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS01110	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATY47_RS01130	SM00354	helix_turn _helix lactose operon repressor
ATY47_RS01140	SM00563	Phosphate acyltransferases
ATY47_RS01190	SM00344	helix_turn_helix ASNC type
ATY47_RS01245	SM00829	Enoylreductase
ATY47_RS01315	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY47_RS01315	SM00091	PAS domain
ATY47_RS01370	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATY47_RS01370	SM01232	ATY47_RS01370
ATY47_RS01375	SM01126	ATY47_RS01375
ATY47_RS01425	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS01440	SM01126	ATY47_RS01440
ATY47_RS01510	SM00564	beta-propeller repeat
ATY47_RS01550	SM00091	PAS domain
ATY47_RS01550	SM00387	Histidine kinase-like ATPases
ATY47_RS01550	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS01550	SM00448	cheY-homologous receiver domain
ATY47_RS01560	SM00346	helix_turn_helix isocitrate lyase regulation
ATY47_RS01580	SM01126	ATY47_RS01580
ATY47_RS01585	SM01321	ATY47_RS01585
ATY47_RS01605	SM00563	Phosphate acyltransferases
ATY47_RS01705	SM01126	ATY47_RS01705
ATY47_RS01745	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS01770	SM00530	Helix-turn-helix XRE-family like proteins 
ATY47_RS01780	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS01800	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY47_RS01845	SM01004	Delta-aminolevulinic acid dehydratase
ATY47_RS01865	SM00477	DNA/RNA non-specific endonuclease
ATY47_RS01865	SM00892	DNA/RNA non-specific endonuclease
ATY47_RS01895	SM00491	ATY47_RS01895
ATY47_RS01905	SM01126	ATY47_RS01905
ATY47_RS01920	SM01060	ATY47_RS01920
ATY47_RS01925	SM00248	ankyrin repeats
ATY47_RS01950	SM00448	cheY-homologous receiver domain
ATY47_RS01950	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS01955	SM00387	Histidine kinase-like ATPases
ATY47_RS01955	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS02045	SM00849	Metallo-beta-lactamase superfamily
ATY47_RS02095	SM01060	ATY47_RS02095
ATY47_RS02140	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY47_RS02140	SM00876	Biotin and Thiamin Synthesis associated domain
ATY47_RS02155	SM00822	ATY47_RS02155
ATY47_RS02180	SM00825	Beta-ketoacyl synthase
ATY47_RS02190	SM00248	ankyrin repeats
ATY47_RS02195	SM00226	Low molecular weight phosphatase family
ATY47_RS02220	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY47_RS02220	SM00924	MgtE intracellular N domain
ATY47_RS02230	SM00881	CoA binding domain
ATY47_RS02300	SM00998	Adenylosuccinate lyase C-terminus
ATY47_RS02320	SM00346	helix_turn_helix isocitrate lyase regulation
ATY47_RS02325	SM00090	RIO-like kinase
ATY47_RS02350	SM00836	DALR anticodon binding domain
ATY47_RS02350	SM01016	Arginyl tRNA synthetase N terminal dom
ATY47_RS02380	SM01259	ATY47_RS02380
ATY47_RS02400	SM00470	ParB-like nuclease domain
ATY47_RS02485	SM00073	Histidine Phosphotransfer domain
ATY47_RS02485	SM00387	Histidine kinase-like ATPases
ATY47_RS02485	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS02485	SM00448	cheY-homologous receiver domain
ATY47_RS02490	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS02490	SM00267	diguanylate cyclase
ATY47_RS02490	SM00448	cheY-homologous receiver domain
ATY47_RS02560	SM00563	Phosphate acyltransferases
ATY47_RS02590	SM01209	ATY47_RS02590
ATY47_RS02590	SM01210	ATY47_RS02590
ATY47_RS02600	SM00798	AICARFT/IMPCHase bienzyme
ATY47_RS02600	SM00851	MGS-like domain
ATY47_RS02630	SM01126	ATY47_RS02630
ATY47_RS02645	SM00530	Helix-turn-helix XRE-family like proteins 
ATY47_RS02675	SM00878	Biotin carboxylase C-terminal domain
ATY47_RS02710	SM01126	ATY47_RS02710
ATY47_RS02730	SM00487	DEAD-like helicases superfamily
ATY47_RS02730	SM00490	helicase superfamily c-terminal domain
ATY47_RS02790	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ATY47_RS02790	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ATY47_RS02790	SM00493	ATY47_RS02790
ATY47_RS02815	SM00257	Lysin motif
ATY47_RS03020	SM01126	ATY47_RS03020
ATY47_RS03035	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS03110	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS03110	SM00448	cheY-homologous receiver domain
ATY47_RS03120	SM00448	cheY-homologous receiver domain
ATY47_RS03125	SM00138	Methyltransferase, chemotaxis proteins 
ATY47_RS03145	SM00387	Histidine kinase-like ATPases
ATY47_RS03150	SM00448	cheY-homologous receiver domain
ATY47_RS03155	SM00850	LytTr DNA-binding domain
ATY47_RS03225	SM00986	Uracil DNA glycosylase superfamily
ATY47_RS03225	SM00987	UreE urease accessory protein, C-terminal domain 
ATY47_RS03235	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATY47_RS03255	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS03290	SM00387	Histidine kinase-like ATPases
ATY47_RS03290	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS03295	SM00448	cheY-homologous receiver domain
ATY47_RS03295	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS03340	SM00344	helix_turn_helix ASNC type
ATY47_RS03350	SM01005	Alanine racemase, C-terminal domain
ATY47_RS03370	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY47_RS03370	SM00091	PAS domain
ATY47_RS03370	SM00387	Histidine kinase-like ATPases
ATY47_RS03370	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS03370	SM00448	cheY-homologous receiver domain
ATY47_RS03455	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS03455	SM00930	ATY47_RS03455
ATY47_RS03480	SM00986	Uracil DNA glycosylase superfamily
ATY47_RS03480	SM00987	UreE urease accessory protein, C-terminal domain 
ATY47_RS03550	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS03560	SM00830	Chorismate mutase type II
ATY47_RS03585	SM01126	ATY47_RS03585
ATY47_RS03685	SM00825	Beta-ketoacyl synthase
ATY47_RS03710	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY47_RS03735	SM00487	DEAD-like helicases superfamily
ATY47_RS03735	SM00490	helicase superfamily c-terminal domain
ATY47_RS03770	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY47_RS03820	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS03830	SM00893	Electron transfer flavoprotein domain
ATY47_RS03835	SM00893	Electron transfer flavoprotein domain
ATY47_RS03870	SM00882	Coenzyme A transferase
ATY47_RS03875	SM00882	Coenzyme A transferase
ATY47_RS03905	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS03920	SM00528	Domain in histone-like proteins of HNS family
ATY47_RS03975	SM00656	ATY47_RS03975
ATY47_RS04060	SM01211	ATY47_RS04060
ATY47_RS04085	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS04155	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY47_RS04155	SM00866	ATY47_RS04155
ATY47_RS04225	SM00487	DEAD-like helicases superfamily
ATY47_RS04230	SM01126	ATY47_RS04230
ATY47_RS04260	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ATY47_RS04265	SM00822	ATY47_RS04265
ATY47_RS04275	SM00825	Beta-ketoacyl synthase
ATY47_RS04325	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS04415	SM00271	DnaJ molecular chaperone homology domain
ATY47_RS04420	SM00448	cheY-homologous receiver domain
ATY47_RS04425	SM00244	prohibitin homologues
ATY47_RS04430	SM00244	prohibitin homologues
ATY47_RS04440	SM00788	Adenylosuccinate synthetase
ATY47_RS04550	SM01329	ATY47_RS04550
ATY47_RS04555	SM00917	LeuA allosteric (dimerisation) domain
ATY47_RS04590	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS04595	SM00342	helix_turn_helix, arabinose operon control protein
ATY47_RS04630	SM01126	ATY47_RS04630
ATY47_RS04640	SM01126	ATY47_RS04640
ATY47_RS04660	SM00464	Found in ATP-dependent protease La (LON)
ATY47_RS04695	SM00838	Elongation factor G C-terminus
ATY47_RS04775	SM01126	ATY47_RS04775
ATY47_RS04830	SM01126	ATY47_RS04830
ATY47_RS04910	SM01126	ATY47_RS04910
ATY47_RS04915	SM01329	ATY47_RS04915
ATY47_RS04980	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS04980	SM00994	ClpX C4-type zinc finger
ATY47_RS04980	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY47_RS04985	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS04985	SM00464	Found in ATP-dependent protease La (LON)
ATY47_RS04990	SM00411	bacterial (prokaryotic) histone like domain
ATY47_RS05015	SM00257	Lysin motif
ATY47_RS05020	SM00849	Metallo-beta-lactamase superfamily
ATY47_RS05035	SM00479	ATY47_RS05035
ATY47_RS05045	SM00331	Sigma factor PP2C-like phosphatases
ATY47_RS05045	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY47_RS05125	SM01126	ATY47_RS05125
ATY47_RS05150	SM00849	Metallo-beta-lactamase superfamily
ATY47_RS05155	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY47_RS05190	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS05200	SM00493	ATY47_RS05200
ATY47_RS05215	SM00460	Transglutaminase/protease-like homologues
ATY47_RS05225	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS05295	SM00506	Appr-1"-p processing enzyme
ATY47_RS05310	SM00450	Rhodanese Homology Domain
ATY47_RS05345	SM01154	ATY47_RS05345
ATY47_RS05355	SM00642	Alpha-amylase domain
ATY47_RS05375	SM00354	helix_turn _helix lactose operon repressor
ATY47_RS05380	SM00822	ATY47_RS05380
ATY47_RS05395	SM00448	cheY-homologous receiver domain
ATY47_RS05395	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS05400	SM00387	Histidine kinase-like ATPases
ATY47_RS05400	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS05410	SM00421	helix_turn_helix, Lux Regulon
ATY47_RS05410	SM00448	cheY-homologous receiver domain
ATY47_RS05450	SM00387	Histidine kinase-like ATPases
ATY47_RS05450	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS05450	SM00448	cheY-homologous receiver domain
ATY47_RS05470	SM00919	Malic enzyme, NAD binding domain
ATY47_RS05470	SM01274	ATY47_RS05470
ATY47_RS05565	SM01011	Aminopeptidase P, N-terminal domain
ATY47_RS05605	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY47_RS05630	SM00072	Guanylate kinase homologues.
ATY47_RS05645	SM01409	ATY47_RS05645
ATY47_RS05650	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY47_RS05650	SM00954	Region found in RelA / SpoT proteins
ATY47_RS05660	SM00487	DEAD-like helicases superfamily
ATY47_RS05660	SM00490	helicase superfamily c-terminal domain
ATY47_RS05715	SM00965	Secretin and TonB N terminus short domain
ATY47_RS05750	SM00327	von Willebrand factor (vWF) type A domain
ATY47_RS05755	SM00028	Tetratricopeptide repeats
ATY47_RS05755	SM00327	von Willebrand factor (vWF) type A domain
ATY47_RS05780	SM00861	Transketolase, pyrimidine binding domain
ATY47_RS05840	SM00448	cheY-homologous receiver domain
ATY47_RS05840	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS05845	SM00387	Histidine kinase-like ATPases
ATY47_RS05845	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS05865	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS05880	SM00849	Metallo-beta-lactamase superfamily
ATY47_RS05915	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATY47_RS05930	SM01126	ATY47_RS05930
ATY47_RS05935	SM00387	Histidine kinase-like ATPases
ATY47_RS05935	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS05940	SM00448	cheY-homologous receiver domain
ATY47_RS05940	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS06225	SM00422	helix_turn_helix, mercury resistance
ATY47_RS06250	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY47_RS06260	SM00849	Metallo-beta-lactamase superfamily
ATY47_RS06285	SM00421	helix_turn_helix, Lux Regulon
ATY47_RS06325	SM00924	MgtE intracellular N domain
ATY47_RS06370	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS06390	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY47_RS06530	SM00813	Alpha-L-arabinofuranosidase C-terminus
ATY47_RS06550	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS06550	SM00962	SRP54-type protein, GTPase domain
ATY47_RS06550	SM00963	SRP54-type protein, helical bundle domain
ATY47_RS06605	SM00363	S4 RNA-binding domain
ATY47_RS06630	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS06630	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY47_RS06705	SM00855	Phosphoglycerate mutase family
ATY47_RS06795	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS06840	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS06845	SM00342	helix_turn_helix, arabinose operon control protein
ATY47_RS06905	SM01126	ATY47_RS06905
ATY47_RS06945	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS06960	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
ATY47_RS07000	SM00411	bacterial (prokaryotic) histone like domain
ATY47_RS07020	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS07065	SM00732	Likely ribonuclease with RNase H fold.
ATY47_RS07145	SM00267	diguanylate cyclase
ATY47_RS07150	SM00829	Enoylreductase
ATY47_RS07165	SM01126	ATY47_RS07165
ATY47_RS07280	SM00855	Phosphoglycerate mutase family
ATY47_RS07305	SM00448	cheY-homologous receiver domain
ATY47_RS07310	SM00138	Methyltransferase, chemotaxis proteins 
ATY47_RS07315	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS07315	SM00448	cheY-homologous receiver domain
ATY47_RS07320	SM00260	Two component signalling adaptor domain
ATY47_RS07325	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY47_RS07325	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS07330	SM00073	Histidine Phosphotransfer domain
ATY47_RS07330	SM00260	Two component signalling adaptor domain
ATY47_RS07330	SM00387	Histidine kinase-like ATPases
ATY47_RS07330	SM01231	ATY47_RS07330
ATY47_RS07340	SM00487	DEAD-like helicases superfamily
ATY47_RS07340	SM00490	helicase superfamily c-terminal domain
ATY47_RS07340	SM00982	ATY47_RS07340
ATY47_RS07340	SM01058	CarD-like/TRCF domain
ATY47_RS07360	SM00387	Histidine kinase-like ATPases
ATY47_RS07360	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS07375	SM00645	Papain family cysteine protease
ATY47_RS07395	SM00645	Papain family cysteine protease
ATY47_RS07410	SM00645	Papain family cysteine protease
ATY47_RS07475	SM00357	Cold shock protein domain
ATY47_RS07610	SM00829	Enoylreductase
ATY47_RS07630	SM00342	helix_turn_helix, arabinose operon control protein
ATY47_RS07630	SM00478	endonuclease III
ATY47_RS07630	SM01009	AlkA N-terminal domain
ATY47_RS07680	SM00487	DEAD-like helicases superfamily
ATY47_RS07680	SM00490	helicase superfamily c-terminal domain
ATY47_RS07685	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS07685	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY47_RS07685	SM00091	PAS domain
ATY47_RS07685	SM00267	diguanylate cyclase
ATY47_RS07690	SM00363	S4 RNA-binding domain
ATY47_RS07725	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS07725	SM00387	Histidine kinase-like ATPases
ATY47_RS07725	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS07730	SM00448	cheY-homologous receiver domain
ATY47_RS07730	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS07760	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS07865	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS07865	SM00448	cheY-homologous receiver domain
ATY47_RS07870	SM00387	Histidine kinase-like ATPases
ATY47_RS07870	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS07880	SM00881	CoA binding domain
ATY47_RS08040	SM00904	Riboflavin kinase
ATY47_RS08085	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY47_RS08135	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ATY47_RS08135	SM00534	ATPase domain of DNA mismatch repair MUTS family
ATY47_RS08160	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS08200	SM00834	Putative regulatory protein
ATY47_RS08235	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY47_RS08245	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS08425	SM00530	Helix-turn-helix XRE-family like proteins 
ATY47_RS08595	SM00448	cheY-homologous receiver domain
ATY47_RS08605	SM00341	Helicase and RNase D C-terminal
ATY47_RS08605	SM00487	DEAD-like helicases superfamily
ATY47_RS08605	SM00490	helicase superfamily c-terminal domain
ATY47_RS08605	SM00956	ATY47_RS08605
ATY47_RS08615	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS08615	SM00487	DEAD-like helicases superfamily
ATY47_RS08615	SM00490	helicase superfamily c-terminal domain
ATY47_RS08615	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY47_RS08680	SM00954	Region found in RelA / SpoT proteins
ATY47_RS08705	SM00491	ATY47_RS08705
ATY47_RS08730	SM00448	cheY-homologous receiver domain
ATY47_RS08735	SM00448	cheY-homologous receiver domain
ATY47_RS08740	SM00260	Two component signalling adaptor domain
ATY47_RS08745	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY47_RS08750	SM00073	Histidine Phosphotransfer domain
ATY47_RS08750	SM00260	Two component signalling adaptor domain
ATY47_RS08750	SM00387	Histidine kinase-like ATPases
ATY47_RS08750	SM00448	cheY-homologous receiver domain
ATY47_RS08750	SM01231	ATY47_RS08750
ATY47_RS08760	SM00260	Two component signalling adaptor domain
ATY47_RS08780	SM00327	von Willebrand factor (vWF) type A domain
ATY47_RS08805	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY47_RS08860	SM01149	ATY47_RS08860
ATY47_RS08905	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS08910	SM00758	ATY47_RS08910
ATY47_RS08910	SM01217	ATY47_RS08910
ATY47_RS08930	SM00636	ATY47_RS08930
ATY47_RS08935	SM00812	Alpha-L-fucosidase
ATY47_RS08985	SM00244	prohibitin homologues
ATY47_RS09065	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY47_RS09115	SM00867	YceI-like domain 
ATY47_RS09125	SM00867	YceI-like domain 
ATY47_RS09130	SM00387	Histidine kinase-like ATPases
ATY47_RS09130	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS09130	SM00448	cheY-homologous receiver domain
ATY47_RS09135	SM00387	Histidine kinase-like ATPases
ATY47_RS09135	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS09135	SM00448	cheY-homologous receiver domain
ATY47_RS09140	SM00387	Histidine kinase-like ATPases
ATY47_RS09140	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS09140	SM00448	cheY-homologous receiver domain
ATY47_RS09160	SM00812	Alpha-L-fucosidase
ATY47_RS09185	SM00530	Helix-turn-helix XRE-family like proteins 
ATY47_RS09235	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY47_RS09240	SM00838	Elongation factor G C-terminus
ATY47_RS09255	SM00358	Double-stranded RNA binding motif
ATY47_RS09255	SM00535	Ribonuclease III family
ATY47_RS09270	SM00448	cheY-homologous receiver domain
ATY47_RS09280	SM01118	ATY47_RS09280
ATY47_RS09325	SM00357	Cold shock protein domain
ATY47_RS09350	SM00487	DEAD-like helicases superfamily
ATY47_RS09350	SM00490	helicase superfamily c-terminal domain
ATY47_RS09380	SM00267	diguanylate cyclase
ATY47_RS09400	SM00869	Autotransporter beta-domain
ATY47_RS09405	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATY47_RS09780	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS09800	SM00481	DNA polymerase alpha chain like domain
ATY47_RS09835	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY47_RS09890	SM00972	Spore Coat Protein U domain
ATY47_RS09905	SM00972	Spore Coat Protein U domain
ATY47_RS09915	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY47_RS09945	SM01172	ATY47_RS09945
ATY47_RS09950	SM00710	Parallel beta-helix repeats
ATY47_RS09950	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
ATY47_RS09975	SM00434	DNA Topoisomerase IV
ATY47_RS09985	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY47_RS10030	SM01126	ATY47_RS10030
ATY47_RS10055	SM00861	Transketolase, pyrimidine binding domain
ATY47_RS10060	SM00507	HNH nucleases
ATY47_RS10130	SM00271	DnaJ molecular chaperone homology domain
ATY47_RS10165	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS10190	SM00861	Transketolase, pyrimidine binding domain
ATY47_RS10200	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY47_RS10205	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY47_RS10290	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS10295	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY47_RS10310	SM00984	UDP binding domain
ATY47_RS10330	SM00354	helix_turn _helix lactose operon repressor
ATY47_RS10350	SM01018	B12 binding domain
ATY47_RS10360	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATY47_RS10390	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY47_RS10390	SM00357	Cold shock protein domain
ATY47_RS10390	SM00955	ATY47_RS10390
ATY47_RS10415	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY47_RS10485	SM01126	ATY47_RS10485
ATY47_RS10505	SM01126	ATY47_RS10505
ATY47_RS10665	SM01007	Class II Aldolase and Adducin N-terminal domain
ATY47_RS10750	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS10765	SM01126	ATY47_RS10765
ATY47_RS10780	SM00363	S4 RNA-binding domain
ATY47_RS10805	SM00354	helix_turn _helix lactose operon repressor
ATY47_RS10880	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY47_RS10885	SM00411	bacterial (prokaryotic) histone like domain
ATY47_RS10905	SM00822	ATY47_RS10905
ATY47_RS10955	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY47_RS10955	SM01240	ATY47_RS10955
ATY47_RS11015	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS11025	SM00529	Helix-turn-helix diphteria tox regulatory element
ATY47_RS11035	SM00479	ATY47_RS11035
ATY47_RS11120	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY47_RS11120	SM00732	Likely ribonuclease with RNase H fold.
ATY47_RS11135	SM00448	cheY-homologous receiver domain
ATY47_RS11140	SM00387	Histidine kinase-like ATPases
ATY47_RS11150	SM00014	Acid phosphatase homologues
ATY47_RS11250	SM00419	helix_turn_helix, cAMP Regulatory protein
ATY47_RS11565	SM01126	ATY47_RS11565
ATY47_RS11610	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY47_RS11610	SM00465	GIY-YIG type nucleases (URI domain)
ATY47_RS11620	SM00226	Low molecular weight phosphatase family
ATY47_RS11635	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS11650	SM00849	Metallo-beta-lactamase superfamily
ATY47_RS11655	SM01126	ATY47_RS11655
ATY47_RS11665	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS11720	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS11775	SM00448	cheY-homologous receiver domain
ATY47_RS11780	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY47_RS11780	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY47_RS11780	SM00091	PAS domain
ATY47_RS11780	SM00387	Histidine kinase-like ATPases
ATY47_RS11780	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS11780	SM00448	cheY-homologous receiver domain
ATY47_RS11810	SM00267	diguanylate cyclase
ATY47_RS11860	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS11905	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY47_RS11935	SM00631	ATY47_RS11935
ATY47_RS11940	SM01217	ATY47_RS11940
ATY47_RS11955	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS11955	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY47_RS11955	SM00267	diguanylate cyclase
ATY47_RS12030	SM00646	ATY47_RS12030
ATY47_RS12060	SM00869	Autotransporter beta-domain
ATY47_RS12080	SM00387	Histidine kinase-like ATPases
ATY47_RS12080	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS12085	SM00421	helix_turn_helix, Lux Regulon
ATY47_RS12085	SM00448	cheY-homologous receiver domain
ATY47_RS12090	SM00869	Autotransporter beta-domain
ATY47_RS12110	SM00830	Chorismate mutase type II
ATY47_RS12130	SM00240	Forkhead associated domain
ATY47_RS12150	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY47_RS12150	SM00866	ATY47_RS12150
ATY47_RS12200	SM00434	DNA Topoisomerase IV
ATY47_RS12225	SM00292	breast cancer carboxy-terminal domain
ATY47_RS12225	SM00532	Ligase N family
ATY47_RS12235	SM00771	ZipA, C-terminal domain (FtsZ-binding)
ATY47_RS12240	SM00968	SMC proteins Flexible Hinge Domain
ATY47_RS12295	SM00947	Carbonic anhydrase
ATY47_RS12320	SM00479	ATY47_RS12320
ATY47_RS12355	SM00981	ATY47_RS12355
ATY47_RS12370	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS12390	SM00644	ATY47_RS12390
ATY47_RS12400	SM00450	Rhodanese Homology Domain
ATY47_RS12425	SM00478	endonuclease III
ATY47_RS12435	SM00947	Carbonic anhydrase
ATY47_RS12490	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS12505	SM00479	ATY47_RS12505
ATY47_RS12560	SM01323	ATY47_RS12560
ATY47_RS12575	SM00344	helix_turn_helix ASNC type
ATY47_RS12685	SM00387	Histidine kinase-like ATPases
ATY47_RS12705	SM00450	Rhodanese Homology Domain
ATY47_RS12710	SM01126	ATY47_RS12710
ATY47_RS12780	SM00852	Probable molybdopterin binding domain
ATY47_RS12785	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS12790	SM00564	beta-propeller repeat
ATY47_RS12805	SM00028	Tetratricopeptide repeats
ATY47_RS12815	SM00562	ATY47_RS12815
ATY47_RS12855	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS12875	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS12875	SM00843	ATY47_RS12875
ATY47_RS12905	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY47_RS12910	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS12910	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY47_RS12935	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY47_RS12950	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS12950	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY47_RS12950	SM00091	PAS domain
ATY47_RS12950	SM00267	diguanylate cyclase
ATY47_RS12955	SM00091	PAS domain
ATY47_RS12955	SM00387	Histidine kinase-like ATPases
ATY47_RS12960	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS12960	SM00267	diguanylate cyclase
ATY47_RS12960	SM00448	cheY-homologous receiver domain
ATY47_RS12965	SM00387	Histidine kinase-like ATPases
ATY47_RS12980	SM00858	ATY47_RS12980
ATY47_RS12985	SM00260	Two component signalling adaptor domain
ATY47_RS12985	SM00448	cheY-homologous receiver domain
ATY47_RS13030	SM00047	Lysozyme subfamily 2
ATY47_RS13070	SM00421	helix_turn_helix, Lux Regulon
ATY47_RS13070	SM00448	cheY-homologous receiver domain
ATY47_RS13080	SM00448	cheY-homologous receiver domain
ATY47_RS13085	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS13105	SM00822	ATY47_RS13105
ATY47_RS13110	SM00822	ATY47_RS13110
ATY47_RS13160	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS13210	SM00267	diguanylate cyclase
ATY47_RS13215	SM00267	diguanylate cyclase
ATY47_RS13220	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS13220	SM00267	diguanylate cyclase
ATY47_RS13235	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS13235	SM00962	SRP54-type protein, GTPase domain
ATY47_RS13250	SM00448	cheY-homologous receiver domain
ATY47_RS13260	SM00073	Histidine Phosphotransfer domain
ATY47_RS13260	SM00260	Two component signalling adaptor domain
ATY47_RS13260	SM00387	Histidine kinase-like ATPases
ATY47_RS13260	SM01231	ATY47_RS13260
ATY47_RS13400	SM01126	ATY47_RS13400
ATY47_RS13415	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS13420	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS13455	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
ATY47_RS13465	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ATY47_RS13485	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY47_RS13525	SM00840	ATY47_RS13525
ATY47_RS13540	SM00245	tail specific protease
ATY47_RS13555	SM01234	ATY47_RS13555
ATY47_RS13660	SM00841	Elongation factor P, C-terminal
ATY47_RS13660	SM01185	ATY47_RS13660
ATY47_RS13670	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS13670	SM00267	diguanylate cyclase
ATY47_RS13670	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS13715	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS13720	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS13720	SM00487	DEAD-like helicases superfamily
ATY47_RS13720	SM00490	helicase superfamily c-terminal domain
ATY47_RS13745	SM00357	Cold shock protein domain
ATY47_RS13755	SM01322	ATY47_RS13755
ATY47_RS13765	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS13765	SM00267	diguanylate cyclase
ATY47_RS13780	SM00822	ATY47_RS13780
ATY47_RS13800	SM00853	MutL C terminal dimerisation domain
ATY47_RS13800	SM01340	ATY47_RS13800
ATY47_RS13805	SM00646	ATY47_RS13805
ATY47_RS13860	SM00474	3'-5' exonuclease
ATY47_RS13875	SM00528	Domain in histone-like proteins of HNS family
ATY47_RS13910	SM01126	ATY47_RS13910
ATY47_RS13985	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY47_RS14010	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY47_RS14010	SM01091	Transporter associated domain
ATY47_RS14045	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS14070	SM01230	ATY47_RS14070
ATY47_RS14080	SM01230	ATY47_RS14080
ATY47_RS14090	SM00267	diguanylate cyclase
ATY47_RS14090	SM00448	cheY-homologous receiver domain
ATY47_RS14145	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY47_RS14145	SM00091	PAS domain
ATY47_RS14145	SM00387	Histidine kinase-like ATPases
ATY47_RS14145	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS14145	SM00448	cheY-homologous receiver domain
ATY47_RS14145	SM01079	ATY47_RS14145
ATY47_RS14150	SM00448	cheY-homologous receiver domain
ATY47_RS14150	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY47_RS14185	SM01126	ATY47_RS14185
ATY47_RS14195	SM00354	helix_turn _helix lactose operon repressor
ATY47_RS14395	SM00260	Two component signalling adaptor domain
ATY47_RS14405	SM00448	cheY-homologous receiver domain
ATY47_RS14410	SM00073	Histidine Phosphotransfer domain
ATY47_RS14410	SM00260	Two component signalling adaptor domain
ATY47_RS14410	SM00387	Histidine kinase-like ATPases
ATY47_RS14410	SM01231	ATY47_RS14410
ATY47_RS14435	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY47_RS14440	SM01126	ATY47_RS14440
ATY47_RS14445	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY47_RS14445	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS14455	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY47_RS14455	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS14460	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY47_RS14460	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS14465	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY47_RS14465	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS14470	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY47_RS14470	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS14485	SM00260	Two component signalling adaptor domain
ATY47_RS14505	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY47_RS14505	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS14510	SM00138	Methyltransferase, chemotaxis proteins 
ATY47_RS14520	SM00448	cheY-homologous receiver domain
ATY47_RS14525	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS14525	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY47_RS14525	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY47_RS14525	SM00091	PAS domain
ATY47_RS14525	SM00267	diguanylate cyclase
ATY47_RS14550	SM00966	SpoVT / AbrB like domain 
ATY47_RS14575	SM00073	Histidine Phosphotransfer domain
ATY47_RS14575	SM00387	Histidine kinase-like ATPases
ATY47_RS14575	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS14575	SM00448	cheY-homologous receiver domain
ATY47_RS14585	SM00448	cheY-homologous receiver domain
ATY47_RS14585	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY47_RS14595	SM00937	ATY47_RS14595
ATY47_RS14600	SM00850	LytTr DNA-binding domain
ATY47_RS14640	SM00851	MGS-like domain
ATY47_RS14640	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATY47_RS14650	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ATY47_RS14700	SM00899	ATY47_RS14700
ATY47_RS14720	SM00822	ATY47_RS14720
ATY47_RS14725	SM00841	Elongation factor P, C-terminal
ATY47_RS14725	SM01185	ATY47_RS14725
ATY47_RS14775	SM00758	ATY47_RS14775
ATY47_RS14795	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY47_RS14820	SM01130	ATY47_RS14820
ATY47_RS14840	SM00670	Large family of predicted nucleotide-binding domains
ATY47_RS14935	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY47_RS14945	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS14985	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS14995	SM01103	ATY47_RS14995
ATY47_RS15005	SM00257	Lysin motif
ATY47_RS15025	SM00463	Small MutS-related domain
ATY47_RS15055	SM01192	ATY47_RS15055
ATY47_RS15055	SM01193	ATY47_RS15055
ATY47_RS15080	SM00387	Histidine kinase-like ATPases
ATY47_RS15080	SM00433	TopoisomeraseII
ATY47_RS15110	SM01091	Transporter associated domain
ATY47_RS15145	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS15155	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY47_RS15410	SM00448	cheY-homologous receiver domain
ATY47_RS15410	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS15420	SM00387	Histidine kinase-like ATPases
ATY47_RS15460	SM00331	Sigma factor PP2C-like phosphatases
ATY47_RS15460	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY47_RS15485	SM00240	Forkhead associated domain
ATY47_RS15515	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS15515	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY47_RS15645	SM00363	S4 RNA-binding domain
ATY47_RS15650	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY47_RS15670	SM00421	helix_turn_helix, Lux Regulon
ATY47_RS15670	SM00448	cheY-homologous receiver domain
ATY47_RS15675	SM00450	Rhodanese Homology Domain
ATY47_RS15700	SM00984	UDP binding domain
ATY47_RS15750	SM01126	ATY47_RS15750
ATY47_RS15760	SM01126	ATY47_RS15760
ATY47_RS15770	SM01012	ATY47_RS15770
ATY47_RS15810	SM00852	Probable molybdopterin binding domain
ATY47_RS15910	SM00944	Pro-kumamolisin, activation domain
ATY47_RS15980	SM01130	ATY47_RS15980
ATY47_RS16005	SM00342	helix_turn_helix, arabinose operon control protein
ATY47_RS16010	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS16010	SM00962	SRP54-type protein, GTPase domain
ATY47_RS16010	SM00963	SRP54-type protein, helical bundle domain
ATY47_RS16025	SM00478	endonuclease III
ATY47_RS16035	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY47_RS16035	SM00091	PAS domain
ATY47_RS16035	SM00387	Histidine kinase-like ATPases
ATY47_RS16035	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS16035	SM00448	cheY-homologous receiver domain
ATY47_RS16060	SM01126	ATY47_RS16060
ATY47_RS16210	SM00422	helix_turn_helix, mercury resistance
ATY47_RS16215	SM00411	bacterial (prokaryotic) histone like domain
ATY47_RS16220	SM00873	B3/4 domain
ATY47_RS16220	SM00874	tRNA synthetase B5 domain
ATY47_RS16220	SM00896	Ferredoxin-fold anticodon binding domain
ATY47_RS16245	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY47_RS16275	SM00487	DEAD-like helicases superfamily
ATY47_RS16275	SM00490	helicase superfamily c-terminal domain
ATY47_RS16360	SM01001	AIR carboxylase
ATY47_RS16380	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY47_RS16380	SM00322	K homology RNA-binding domain
ATY47_RS16385	SM01387	ATY47_RS16385
ATY47_RS16405	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY47_RS16405	SM00322	K homology RNA-binding domain
ATY47_RS16455	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
ATY47_RS16460	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
ATY47_RS16505	SM00822	ATY47_RS16505
ATY47_RS16535	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS16535	SM00267	diguanylate cyclase
ATY47_RS16535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS16605	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY47_RS16640	SM00257	Lysin motif
ATY47_RS16670	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY47_RS16710	SM01160	ATY47_RS16710
ATY47_RS16720	SM01126	ATY47_RS16720
ATY47_RS16770	SM00098	Alkaline phosphatase homologues
ATY47_RS16775	SM00977	TilS substrate C-terminal domain
ATY47_RS16825	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY47_RS16915	SM01126	ATY47_RS16915
ATY47_RS16965	SM01126	ATY47_RS16965
ATY47_RS16980	SM00642	Alpha-amylase domain
ATY47_RS17025	SM00528	Domain in histone-like proteins of HNS family
ATY47_RS17065	SM01126	ATY47_RS17065
ATY47_RS17075	SM00869	Autotransporter beta-domain
ATY47_RS17155	SM01126	ATY47_RS17155
ATY47_RS17165	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY47_RS17185	SM01126	ATY47_RS17185
ATY47_RS17250	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY47_RS17250	SM00387	Histidine kinase-like ATPases
ATY47_RS17300	SM00506	Appr-1"-p processing enzyme
ATY47_RS17350	SM01060	ATY47_RS17350
ATY47_RS17375	SM01126	ATY47_RS17375
ATY47_RS17390	SM00091	PAS domain
ATY47_RS17390	SM00342	helix_turn_helix, arabinose operon control protein
ATY47_RS17465	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY47_RS17470	SM00481	DNA polymerase alpha chain like domain
ATY47_RS17490	SM00966	SpoVT / AbrB like domain 
ATY47_RS17515	SM00855	Phosphoglycerate mutase family
ATY47_RS17545	SM00220	Serine/Threonine protein kinases, catalytic domain
ATY47_RS17555	SM00487	DEAD-like helicases superfamily
ATY47_RS17600	SM00487	DEAD-like helicases superfamily
ATY47_RS17600	SM00490	helicase superfamily c-terminal domain
ATY47_RS17685	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS17685	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY47_RS17945	SM00478	endonuclease III
ATY47_RS17970	SM00421	helix_turn_helix, Lux Regulon
ATY47_RS17970	SM00448	cheY-homologous receiver domain
ATY47_RS18005	SM00387	Histidine kinase-like ATPases
ATY47_RS18005	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS18010	SM00448	cheY-homologous receiver domain
ATY47_RS18010	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS18045	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS18075	SM00990	ATY47_RS18075
ATY47_RS18130	SM00662	RNA polymerases D
ATY47_RS18135	SM00363	S4 RNA-binding domain
ATY47_RS18135	SM01390	ATY47_RS18135
ATY47_RS18195	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY47_RS18200	SM01374	ATY47_RS18200
ATY47_RS18220	SM00322	K homology RNA-binding domain
ATY47_RS18235	SM01382	ATY47_RS18235
ATY47_RS18235	SM01383	ATY47_RS18235
ATY47_RS18255	SM01403	ATY47_RS18255
ATY47_RS18270	SM00838	Elongation factor G C-terminus
ATY47_RS18270	SM00889	Elongation factor G, domain IV
ATY47_RS18285	SM00663	RNA polymerase I subunit A N-terminus
ATY47_RS18310	SM00649	Ribosomal protein L11/L12
ATY47_RS18315	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ATY47_RS18315	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY47_RS18365	SM01400	ATY47_RS18365
ATY47_RS18385	SM00028	Tetratricopeptide repeats
ATY47_RS18395	SM00937	ATY47_RS18395
ATY47_RS18400	SM00028	Tetratricopeptide repeats
ATY47_RS18405	SM00852	Probable molybdopterin binding domain
ATY47_RS18525	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATY47_RS18525	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATY47_RS18540	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY47_RS18540	SM00475	5'-3' exonuclease
ATY47_RS18615	SM01126	ATY47_RS18615
ATY47_RS18675	SM00448	cheY-homologous receiver domain
ATY47_RS18675	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS18680	SM00387	Histidine kinase-like ATPases
ATY47_RS18680	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS18700	SM00014	Acid phosphatase homologues
ATY47_RS18750	SM00855	Phosphoglycerate mutase family
ATY47_RS18770	SM00829	Enoylreductase
ATY47_RS18780	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS18825	SM00829	Enoylreductase
ATY47_RS18870	SM00387	Histidine kinase-like ATPases
ATY47_RS18870	SM00448	cheY-homologous receiver domain
ATY47_RS18875	SM00448	cheY-homologous receiver domain
ATY47_RS18975	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY47_RS19020	SM01126	ATY47_RS19020
ATY47_RS19080	SM00650	Ribosomal RNA adenine dimethylases
ATY47_RS19145	SM00387	Histidine kinase-like ATPases
ATY47_RS19145	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS19150	SM00448	cheY-homologous receiver domain
ATY47_RS19150	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS19160	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS19180	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS19310	SM00996	S-adenosyl-L-homocysteine hydrolase
ATY47_RS19310	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ATY47_RS19370	SM00829	Enoylreductase
ATY47_RS19405	SM00957	SecA DEAD-like domain
ATY47_RS19405	SM00958	SecA preprotein cross-linking domain
ATY47_RS19425	SM00864	Tubulin/FtsZ family, GTPase domain
ATY47_RS19425	SM00865	Tubulin/FtsZ family, C-terminal domain
ATY47_RS19430	SM00842	Cell division protein FtsA
ATY47_RS19535	SM00448	cheY-homologous receiver domain
ATY47_RS19535	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS19540	SM00387	Histidine kinase-like ATPases
ATY47_RS19540	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS19650	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS19680	SM00829	Enoylreductase
ATY47_RS19695	SM00448	cheY-homologous receiver domain
ATY47_RS19695	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS19700	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS19700	SM00387	Histidine kinase-like ATPases
ATY47_RS19700	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS19835	SM01126	ATY47_RS19835
ATY47_RS19875	SM01126	ATY47_RS19875
ATY47_RS19920	SM00354	helix_turn _helix lactose operon repressor
ATY47_RS19930	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY47_RS19930	SM00866	ATY47_RS19930
ATY47_RS19985	SM00387	Histidine kinase-like ATPases
ATY47_RS19985	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS19985	SM00448	cheY-homologous receiver domain
ATY47_RS19990	SM00448	cheY-homologous receiver domain
ATY47_RS19995	SM00387	Histidine kinase-like ATPases
ATY47_RS19995	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS20000	SM00749	bacterial OsmY and nodulation domain
ATY47_RS20010	SM01350	ATY47_RS20010
ATY47_RS20060	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY47_RS20060	SM00245	tail specific protease
ATY47_RS20065	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY47_RS20085	SM00936	Penicillin-binding protein 5, C-terminal domain 
ATY47_RS20155	SM00268	Actin
ATY47_RS20210	SM00267	diguanylate cyclase
ATY47_RS20215	SM01263	ATY47_RS20215
ATY47_RS20230	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS20230	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY47_RS20320	SM00448	cheY-homologous receiver domain
ATY47_RS20320	SM00850	LytTr DNA-binding domain
ATY47_RS20350	SM00267	diguanylate cyclase
ATY47_RS20365	SM00637	ATY47_RS20365
ATY47_RS20385	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY47_RS20385	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY47_RS20385	SM00091	PAS domain
ATY47_RS20385	SM00267	diguanylate cyclase
ATY47_RS20395	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY47_RS20460	SM00060	Fibronectin type 3 domain
ATY47_RS20570	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATY47_RS20585	SM00271	DnaJ molecular chaperone homology domain
ATY47_RS20685	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY47_RS20715	SM00861	Transketolase, pyrimidine binding domain
ATY47_RS20720	SM01126	ATY47_RS20720
ATY47_RS20835	SM00644	ATY47_RS20835
ATY47_RS20845	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY47_RS20865	SM01126	ATY47_RS20865
ATY47_RS20945	SM01126	ATY47_RS20945
ATY47_RS20955	SM01126	ATY47_RS20955
ATY47_RS20965	SM01217	ATY47_RS20965
ATY47_RS20970	SM00905	Dihydroneopterin aldolase
ATY47_RS21000	SM00400	zinc finger
ATY47_RS21000	SM00493	ATY47_RS21000
ATY47_RS21000	SM00766	DNA primase DnaG DnaB-binding
ATY47_RS21095	SM01126	ATY47_RS21095
ATY47_RS21150	SM00100	Cyclic nucleotide-monophosphate binding domain
ATY47_RS21150	SM00419	helix_turn_helix, cAMP Regulatory protein
ATY47_RS21170	SM00903	Flavin reductase like domain
ATY47_RS21295	SM01150	ATY47_RS21295
ATY47_RS21305	SM01126	ATY47_RS21305
ATY47_RS21310	SM01126	ATY47_RS21310
ATY47_RS21325	SM00450	Rhodanese Homology Domain
ATY47_RS21350	SM00387	Histidine kinase-like ATPases
ATY47_RS21350	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS21355	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS21355	SM00448	cheY-homologous receiver domain
ATY47_RS21440	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY47_RS21445	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY47_RS21460	SM01126	ATY47_RS21460
ATY47_RS21530	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY47_RS21530	SM00474	3'-5' exonuclease
ATY47_RS21530	SM00475	5'-3' exonuclease
ATY47_RS21530	SM00482	DNA polymerase A domain
ATY47_RS21560	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY47_RS21625	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY47_RS21625	SM00331	Sigma factor PP2C-like phosphatases
ATY47_RS21640	SM00867	YceI-like domain 
ATY47_RS21670	SM00944	Pro-kumamolisin, activation domain
ATY47_RS21715	SM01126	ATY47_RS21715
ATY47_RS21765	SM00883	Chaperonin 10 Kd subunit
ATY47_RS21810	SM00986	Uracil DNA glycosylase superfamily
ATY47_RS21810	SM00987	UreE urease accessory protein, C-terminal domain 
ATY47_RS21815	SM00448	cheY-homologous receiver domain
ATY47_RS21825	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS21830	SM00487	DEAD-like helicases superfamily
ATY47_RS21830	SM00490	helicase superfamily c-terminal domain
ATY47_RS21840	SM00357	Cold shock protein domain
ATY47_RS21840	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS21840	SM00959	Rho termination factor, N-terminal domain
ATY47_RS21905	SM00563	Phosphate acyltransferases
ATY47_RS22025	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS22030	SM00387	Histidine kinase-like ATPases
ATY47_RS22035	SM00448	cheY-homologous receiver domain
ATY47_RS22035	SM00862	Transcriptional regulatory protein, C terminal
ATY47_RS22125	SM01126	ATY47_RS22125
ATY47_RS22230	SM00878	Biotin carboxylase C-terminal domain
ATY47_RS22300	SM00833	Cobalamin synthesis protein cobW C-terminal domain
ATY47_RS22345	SM00836	DALR anticodon binding domain
ATY47_RS22355	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS22440	SM00354	helix_turn _helix lactose operon repressor
ATY47_RS22455	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY47_RS22465	SM00758	ATY47_RS22465
ATY47_RS22465	SM01217	ATY47_RS22465
ATY47_RS22495	SM00633	Glycosyl hydrolase family 10
ATY47_RS22500	SM00633	Glycosyl hydrolase family 10
ATY47_RS22545	SM01126	ATY47_RS22545
ATY47_RS22565	SM00052	Putative diguanylate phosphodiesterase
ATY47_RS22615	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY47_RS22650	SM00530	Helix-turn-helix XRE-family like proteins 
ATY47_RS22700	SM00530	Helix-turn-helix XRE-family like proteins 
ATY47_RS22770	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS22770	SM00448	cheY-homologous receiver domain
ATY47_RS22775	SM00387	Histidine kinase-like ATPases
ATY47_RS22775	SM00388	His Kinase A (phosphoacceptor) domain
ATY47_RS22785	SM00938	Nitrogen regulatory protein P-II
ATY47_RS22790	SM01230	ATY47_RS22790
ATY47_RS22815	SM00028	Tetratricopeptide repeats
ATY47_RS22830	SM00563	Phosphate acyltransferases
ATY47_RS22840	SM00155	Phospholipase D. Active site motifs.
ATY47_RS22845	SM00867	YceI-like domain 
ATY47_RS22850	SM00855	Phosphoglycerate mutase family
ATY47_RS22875	SM00530	Helix-turn-helix XRE-family like proteins 
ATY47_RS22905	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS22920	SM00382	ATPases associated with a variety of cellular activities
ATY47_RS22935	SM01126	ATY47_RS22935
ATY47_RS22975	SM00829	Enoylreductase
ATY47_RS23005	SM00487	DEAD-like helicases superfamily
ATY47_RS23005	SM00490	helicase superfamily c-terminal domain
ATY47_RS23005	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY47_RS23015	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY47_RS23070	SM00421	helix_turn_helix, Lux Regulon
ATY47_RS23070	SM00448	cheY-homologous receiver domain
ATY47_RS23195	SM00155	Phospholipase D. Active site motifs.
ATY47_RS23220	SM01126	ATY47_RS23220
ATY47_RS23265	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY47_RS23300	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY47_RS23300	SM00245	tail specific protease
ATY47_RS23375	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY47_RS23515	SM00014	Acid phosphatase homologues
ATY47_RS23525	SM00028	Tetratricopeptide repeats
