locus-tag class description CDO11_RS00010 PF11638 DnaA N-terminal domain CDO11_RS00010 PF08299 Bacterial dnaA protein helix-turn-helix CDO11_RS00010 PF00308 Bacterial dnaA protein CDO11_RS00015 PF02768 DNA polymerase III beta subunit, C-terminal domain CDO11_RS00015 PF02767 DNA polymerase III beta subunit, central domain CDO11_RS00015 PF00712 DNA polymerase III beta subunit, N-terminal domain CDO11_RS00025 PF02463 RecF/RecN/SMC N terminal domain CDO11_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus CDO11_RS00030 PF01751 Toprim domain CDO11_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS00030 PF18053 DNA gyrase B subunit insert domain CDO11_RS00030 PF00204 DNA gyrase B CDO11_RS00040 PF01435 Peptidase family M48 CDO11_RS00050 PF03544 Gram-negative bacterial TonB protein C-terminal CDO11_RS00055 PF01618 MotA/TolQ/ExbB proton channel family CDO11_RS00060 PF02472 Biopolymer transport protein ExbD/TolR CDO11_RS00065 PF02472 Biopolymer transport protein ExbD/TolR CDO11_RS00070 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CDO11_RS00080 PF13091 PLD-like domain CDO11_RS00080 PF13396 Phospholipase_D-nuclease N-terminal CDO11_RS00090 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CDO11_RS00095 PF00155 Aminotransferase class I and II CDO11_RS00100 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS00100 PF00593 TonB dependent receptor CDO11_RS00115 PF01609 Transposase DDE domain CDO11_RS00115 PF05598 Transposase domain (DUF772) CDO11_RS00120 PF01070 FMN-dependent dehydrogenase CDO11_RS00125 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CDO11_RS00140 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CDO11_RS00140 PF07055 Enoyl reductase FAD binding domain CDO11_RS00140 PF12241 Trans-2-enoyl-CoA reductase catalytic region CDO11_RS00150 PF00294 pfkB family carbohydrate kinase CDO11_RS00160 PF05598 Transposase domain (DUF772) CDO11_RS00160 PF01609 Transposase DDE domain CDO11_RS00165 PF00005 ABC transporter CDO11_RS00175 PF05598 Transposase domain (DUF772) CDO11_RS00215 PF05598 Transposase domain (DUF772) CDO11_RS00215 PF01609 Transposase DDE domain CDO11_RS00225 PF00270 DEAD/DEAH box helicase CDO11_RS00225 PF00271 Helicase conserved C-terminal domain CDO11_RS00240 PF06903 VirK protein CDO11_RS00325 PF03150 Di-haem cytochrome c peroxidase CDO11_RS00335 PF13460 NAD(P)H-binding CDO11_RS00340 PF00128 Alpha amylase, catalytic domain CDO11_RS00340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_RS00350 PF00128 Alpha amylase, catalytic domain CDO11_RS00355 PF02446 4-alpha-glucanotransferase CDO11_RS00360 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_RS00360 PF00128 Alpha amylase, catalytic domain CDO11_RS00360 PF11941 Domain of unknown function (DUF3459) CDO11_RS00365 PF02806 Alpha amylase, C-terminal all-beta domain CDO11_RS00365 PF00128 Alpha amylase, catalytic domain CDO11_RS00365 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_RS00370 PF00534 Glycosyl transferases group 1 CDO11_RS00370 PF08323 Starch synthase catalytic domain CDO11_RS00375 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS00380 PF02638 Glycosyl hydrolase-like 10 CDO11_RS00385 PF05661 Protein of unknown function (DUF808) CDO11_RS00395 PF03109 ABC1 family CDO11_RS00435 PF01464 Transglycosylase SLT domain CDO11_RS00450 PF01609 Transposase DDE domain CDO11_RS00450 PF05598 Transposase domain (DUF772) CDO11_RS00455 PF00263 Bacterial type II and III secretion system protein CDO11_RS00455 PF03958 Bacterial type II/III secretion system short domain CDO11_RS00460 PF01311 Bacterial export proteins, family 1 CDO11_RS00470 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDO11_RS00470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_RS00470 PF18269 T3SS EscN ATPase C-terminal domain CDO11_RS00485 PF01514 Secretory protein of YscJ/FliF family CDO11_RS00500 PF01312 FlhB HrpN YscU SpaS Family CDO11_RS00505 PF00771 FHIPEP family CDO11_RS00520 PF00813 FliP family CDO11_RS00525 PF01313 Bacterial export proteins, family 3 CDO11_RS00580 PF01609 Transposase DDE domain CDO11_RS00580 PF05598 Transposase domain (DUF772) CDO11_RS00595 PF05598 Transposase domain (DUF772) CDO11_RS00595 PF01609 Transposase DDE domain CDO11_RS00605 PF05819 NolX protein CDO11_RS00635 PF00595 PDZ domain CDO11_RS00645 PF08521 Two-component sensor kinase N-terminal CDO11_RS00645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS00645 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS00655 PF08338 Domain of unknown function (DUF1731) CDO11_RS00655 PF01370 NAD dependent epimerase/dehydratase family CDO11_RS00665 PF01609 Transposase DDE domain CDO11_RS00665 PF05598 Transposase domain (DUF772) CDO11_RS00690 PF00665 Integrase core domain CDO11_RS00690 PF13936 Helix-turn-helix domain CDO11_RS00710 PF00293 NUDIX domain CDO11_RS00710 PF13344 Haloacid dehalogenase-like hydrolase CDO11_RS00740 PF13533 Biotin-lipoyl like CDO11_RS00750 PF00005 ABC transporter CDO11_RS00775 PF08845 Toxin SymE, type I toxin-antitoxin system CDO11_RS00795 PF03006 Haemolysin-III related CDO11_RS00800 PF00270 DEAD/DEAH box helicase CDO11_RS00800 PF00271 Helicase conserved C-terminal domain CDO11_RS00800 PF09369 Domain of unknown function (DUF1998) CDO11_RS00865 PF01645 Conserved region in glutamate synthase CDO11_RS00865 PF00310 Glutamine amidotransferases class-II CDO11_RS00865 PF04898 Glutamate synthase central domain CDO11_RS00865 PF01493 GXGXG motif CDO11_RS00870 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDO11_RS00870 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_RS00910 PF05598 Transposase domain (DUF772) CDO11_RS00920 PF00356 Bacterial regulatory proteins, lacI family CDO11_RS00950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_RS00950 PF00128 Alpha amylase, catalytic domain CDO11_RS00950 PF02806 Alpha amylase, C-terminal all-beta domain CDO11_RS00955 PF00128 Alpha amylase, catalytic domain CDO11_RS00955 PF16657 Maltogenic Amylase, C-terminal domain CDO11_RS00960 PF00128 Alpha amylase, catalytic domain CDO11_RS00960 PF11896 Domain of unknown function (DUF3416) CDO11_RS01015 PF13335 Magnesium chelatase, subunit ChlI C-terminal CDO11_RS01015 PF01078 Magnesium chelatase, subunit ChlI CDO11_RS01020 PF04380 Membrane fusogenic activity CDO11_RS01025 PF00543 Nitrogen regulatory protein P-II CDO11_RS01060 PF17284 Spermidine synthase tetramerisation domain CDO11_RS01065 PF17944 Arginine decarboxylase C-terminal helical extension CDO11_RS01065 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDO11_RS01065 PF17810 Arginine decarboxylase helical bundle domain CDO11_RS01070 PF05598 Transposase domain (DUF772) CDO11_RS01075 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CDO11_RS01075 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS01075 PF13296 Putative type VI secretion system Rhs element Vgr CDO11_RS01115 PF01134 Glucose inhibited division protein A CDO11_RS01115 PF13932 GidA associated domain CDO11_RS01130 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_RS01150 PF13649 Methyltransferase domain CDO11_RS01160 PF12697 Alpha/beta hydrolase family CDO11_RS01180 PF04349 Periplasmic glucan biosynthesis protein, MdoG CDO11_RS01190 PF00265 Thymidine kinase CDO11_RS01195 PF00580 UvrD/REP helicase N-terminal domain CDO11_RS01195 PF13361 UvrD-like helicase C-terminal domain CDO11_RS01210 PF04337 Protein of unknown function, DUF480 CDO11_RS01215 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CDO11_RS01220 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CDO11_RS01225 PF04820 Tryptophan halogenase CDO11_RS01240 PF00356 Bacterial regulatory proteins, lacI family CDO11_RS01255 PF01553 Acyltransferase CDO11_RS01285 PF00657 GDSL-like Lipase/Acylhydrolase CDO11_RS01300 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CDO11_RS01305 PF01037 Lrp/AsnC ligand binding domain CDO11_RS01355 PF00107 Zinc-binding dehydrogenase CDO11_RS01355 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_RS01365 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_RS01375 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_RS01385 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_RS01395 PF02810 SEC-C motif CDO11_RS01410 PF01609 Transposase DDE domain CDO11_RS01410 PF05598 Transposase domain (DUF772) CDO11_RS01415 PF01263 Aldose 1-epimerase CDO11_RS01420 PF07690 Major Facilitator Superfamily CDO11_RS01425 PF01126 Heme oxygenase CDO11_RS01430 PF00360 Phytochrome region CDO11_RS01430 PF08446 PAS fold CDO11_RS01430 PF13426 PAS domain CDO11_RS01430 PF01590 GAF domain CDO11_RS01480 PF06827 Zinc finger found in FPG and IleRS CDO11_RS01480 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CDO11_RS01480 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CDO11_RS01505 PF04333 MlaA lipoprotein CDO11_RS01515 PF05494 MlaC protein CDO11_RS01520 PF02470 MlaD protein CDO11_RS01525 PF02405 Permease MlaE CDO11_RS01530 PF00005 ABC transporter CDO11_RS01605 PF01011 PQQ enzyme repeat CDO11_RS01605 PF13570 PQQ-like domain CDO11_RS01605 PF13360 PQQ-like domain CDO11_RS01630 PF06165 Glycosyltransferase family 36 CDO11_RS01630 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CDO11_RS01645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS01645 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS01650 PF02659 Putative manganese efflux pump CDO11_RS01655 PF01614 Bacterial transcriptional regulator CDO11_RS01655 PF09339 IclR helix-turn-helix domain CDO11_RS01660 PF07690 Major Facilitator Superfamily CDO11_RS01665 PF05336 L-rhamnose mutarotase CDO11_RS01695 PF01432 Peptidase family M3 CDO11_RS01715 PF00472 RF-1 domain CDO11_RS01725 PF00849 RNA pseudouridylate synthase CDO11_RS01735 PF03109 ABC1 family CDO11_RS01835 PF02558 Ketopantoate reductase PanE/ApbA CDO11_RS01835 PF08546 Ketopantoate reductase PanE/ApbA C terminal CDO11_RS01845 PF01061 ABC-2 type transporter CDO11_RS01850 PF00005 ABC transporter CDO11_RS01855 PF00175 Oxidoreductase NAD-binding domain CDO11_RS01855 PF01383 CpcD/allophycocyanin linker domain CDO11_RS01860 PF01545 Cation efflux family CDO11_RS01865 PF02583 Metal-sensitive transcriptional repressor CDO11_RS01875 PF01381 Helix-turn-helix CDO11_RS01885 PF00005 ABC transporter CDO11_RS01900 PF04820 Tryptophan halogenase CDO11_RS01920 PF02798 Glutathione S-transferase, N-terminal domain CDO11_RS01920 PF00043 Glutathione S-transferase, C-terminal domain CDO11_RS01930 PF00326 Prolyl oligopeptidase family CDO11_RS01930 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CDO11_RS01955 PF00490 Delta-aminolevulinic acid dehydratase CDO11_RS01980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS01980 PF03466 LysR substrate binding domain CDO11_RS01990 PF00258 Flavodoxin CDO11_RS01990 PF00667 FAD binding domain CDO11_RS01990 PF00175 Oxidoreductase NAD-binding domain CDO11_RS02005 PF08501 Shikimate dehydrogenase substrate binding domain CDO11_RS02005 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CDO11_RS02005 PF01488 Shikimate / quinate 5-dehydrogenase CDO11_RS02015 PF06733 DEAD_2 CDO11_RS02015 PF13307 Helicase C-terminal domain CDO11_RS02040 PF13533 Biotin-lipoyl like CDO11_RS02045 PF06628 Catalase-related immune-responsive CDO11_RS02045 PF00199 Catalase CDO11_RS02070 PF01207 Dihydrouridine synthase (Dus) CDO11_RS02080 PF00072 Response regulator receiver domain CDO11_RS02080 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS02085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS02110 PF03099 Biotin/lipoate A/B protein ligase family CDO11_RS02110 PF08279 HTH domain CDO11_RS02110 PF02237 Biotin protein ligase C terminal domain CDO11_RS02115 PF03309 Type III pantothenate kinase CDO11_RS02130 PF02223 Thymidylate kinase CDO11_RS02155 PF00491 Arginase family CDO11_RS02170 PF05532 CsbD-like CDO11_RS02175 PF00579 tRNA synthetases class I (W and Y) CDO11_RS02180 PF00753 Metallo-beta-lactamase superfamily CDO11_RS02210 PF00892 EamA-like transporter family CDO11_RS02230 PF00199 Catalase CDO11_RS02235 PF08281 Sigma-70, region 4 CDO11_RS02235 PF04542 Sigma-70 region 2 CDO11_RS02245 PF00883 Cytosol aminopeptidase family, catalytic domain CDO11_RS02245 PF02789 Cytosol aminopeptidase family, N-terminal domain CDO11_RS02255 PF01594 AI-2E family transporter CDO11_RS02270 PF01040 UbiA prenyltransferase family CDO11_RS02280 PF04055 Radical SAM superfamily CDO11_RS02280 PF06968 Biotin and Thiamin Synthesis associated domain CDO11_RS02285 PF00155 Aminotransferase class I and II CDO11_RS02315 PF00535 Glycosyl transferase family 2 CDO11_RS02325 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO11_RS02325 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO11_RS02330 PF05166 YcgL domain CDO11_RS02345 PF00723 Glycosyl hydrolases family 15 CDO11_RS02350 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CDO11_RS02350 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CDO11_RS02365 PF02254 TrkA-N domain CDO11_RS02365 PF00999 Sodium/hydrogen exchanger family CDO11_RS02370 PF03448 MgtE intracellular N domain CDO11_RS02370 PF01769 Divalent cation transporter CDO11_RS02370 PF00571 CBS domain CDO11_RS02380 PF00583 Acetyltransferase (GNAT) family CDO11_RS02380 PF13607 Succinyl-CoA ligase like flavodoxin domain CDO11_RS02380 PF13380 CoA binding domain CDO11_RS02390 PF03477 ATP cone domain CDO11_RS02390 PF02867 Ribonucleotide reductase, barrel domain CDO11_RS02390 PF00317 Ribonucleotide reductase, all-alpha domain CDO11_RS02400 PF00268 Ribonucleotide reductase, small chain CDO11_RS02430 PF02803 Thiolase, C-terminal domain CDO11_RS02430 PF00108 Thiolase, N-terminal domain CDO11_RS02435 PF00775 Dioxygenase CDO11_RS02435 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CDO11_RS02450 PF10397 Adenylosuccinate lyase C-terminus CDO11_RS02450 PF00206 Lyase CDO11_RS02455 PF12146 Serine aminopeptidase, S33 CDO11_RS02460 PF02627 Carboxymuconolactone decarboxylase family CDO11_RS02485 PF00106 short chain dehydrogenase CDO11_RS02500 PF00750 tRNA synthetases class I (R) CDO11_RS02500 PF03485 Arginyl tRNA synthetase N terminal domain CDO11_RS02500 PF05746 DALR anticodon binding domain CDO11_RS02505 PF04002 RadC-like JAB domain CDO11_RS02510 PF04127 DNA / pantothenate metabolism flavoprotein CDO11_RS02510 PF02441 Flavoprotein CDO11_RS02515 PF00692 dUTPase CDO11_RS02520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDO11_RS02520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDO11_RS02520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDO11_RS02520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDO11_RS02535 PF00535 Glycosyl transferase family 2 CDO11_RS02540 PF01370 NAD dependent epimerase/dehydratase family CDO11_RS02550 PF02195 ParB-like nuclease domain CDO11_RS02550 PF17762 HTH domain found in ParB protein CDO11_RS02555 PF13614 AAA domain CDO11_RS02565 PF00156 Phosphoribosyl transferase domain CDO11_RS02570 PF03372 Endonuclease/Exonuclease/phosphatase family CDO11_RS02575 PF07690 Major Facilitator Superfamily CDO11_RS02585 PF03702 Anhydro-N-acetylmuramic acid kinase CDO11_RS02590 PF01551 Peptidase family M23 CDO11_RS02590 PF04225 Opacity-associated protein A LysM-like domain CDO11_RS02595 PF00579 tRNA synthetases class I (W and Y) CDO11_RS02630 PF00672 HAMP domain CDO11_RS02630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS02630 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS02630 PF01627 Hpt domain CDO11_RS02630 PF00072 Response regulator receiver domain CDO11_RS02630 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDO11_RS02635 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS02635 PF00072 Response regulator receiver domain CDO11_RS02665 PF01521 Iron-sulphur cluster biosynthesis CDO11_RS02675 PF00293 NUDIX domain CDO11_RS02675 PF09297 NADH pyrophosphatase zinc ribbon domain CDO11_RS02675 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CDO11_RS02680 PF17113 Regulatory signalling modulator protein AmpE CDO11_RS02680 PF03186 CobD/Cbib protein CDO11_RS02705 PF07690 Major Facilitator Superfamily CDO11_RS02720 PF12805 FUSC-like inner membrane protein yccS CDO11_RS02730 PF12704 MacB-like periplasmic core domain CDO11_RS02730 PF02687 FtsX-like permease family CDO11_RS02730 PF00005 ABC transporter CDO11_RS02735 PF02843 Phosphoribosylglycinamide synthetase, C domain CDO11_RS02735 PF02844 Phosphoribosylglycinamide synthetase, N domain CDO11_RS02735 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CDO11_RS02745 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system CDO11_RS02750 PF01808 AICARFT/IMPCHase bienzyme CDO11_RS02750 PF02142 MGS-like domain CDO11_RS02760 PF12147 Putative methyltransferase CDO11_RS02760 PF12146 Serine aminopeptidase, S33 CDO11_RS02770 PF12147 Putative methyltransferase CDO11_RS02770 PF12146 Serine aminopeptidase, S33 CDO11_RS02775 PF00782 Dual specificity phosphatase, catalytic domain CDO11_RS02790 PF02954 Bacterial regulatory protein, Fis family CDO11_RS02805 PF01381 Helix-turn-helix CDO11_RS02850 PF02785 Biotin carboxylase C-terminal domain CDO11_RS02850 PF00289 Biotin carboxylase, N-terminal domain CDO11_RS02850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO11_RS02860 PF00364 Biotin-requiring enzyme CDO11_RS02865 PF01220 Dehydroquinase class II CDO11_RS02880 PF02683 Cytochrome C biogenesis protein transmembrane region CDO11_RS02880 PF11412 Disulphide bond corrector protein DsbC CDO11_RS02885 PF03091 CutA1 divalent ion tolerance protein CDO11_RS02920 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CDO11_RS02920 PF18074 Primosomal protein N C-terminal domain CDO11_RS02920 PF17764 3′ DNA-binding domain (3′BD) CDO11_RS02920 PF00270 DEAD/DEAH box helicase CDO11_RS02920 PF00271 Helicase conserved C-terminal domain CDO11_RS02950 PF01554 MatE CDO11_RS02955 PF01343 Peptidase family S49 CDO11_RS02980 PF01300 Telomere recombination CDO11_RS02985 PF01131 DNA topoisomerase CDO11_RS02985 PF01751 Toprim domain CDO11_RS02985 PF13368 Topoisomerase C-terminal repeat CDO11_RS02995 PF00114 Pilin (bacterial filament) CDO11_RS02995 PF07963 Prokaryotic N-terminal methylation motif CDO11_RS03000 PF04361 Protein of unknown function (DUF494) CDO11_RS03005 PF02481 DNA recombination-mediator protein A CDO11_RS03005 PF17782 DprA winged helix domain CDO11_RS03010 PF01476 LysM domain CDO11_RS03015 PF01327 Polypeptide deformylase CDO11_RS03020 PF02911 Formyl transferase, C-terminal domain CDO11_RS03020 PF00551 Formyl transferase CDO11_RS03025 PF01029 NusB family CDO11_RS03025 PF01189 16S rRNA methyltransferase RsmB/F CDO11_RS03040 PF00535 Glycosyl transferase family 2 CDO11_RS03060 PF00925 GTP cyclohydrolase II CDO11_RS03075 PF03279 Bacterial lipid A biosynthesis acyltransferase CDO11_RS03080 PF02580 D-Tyr-tRNA(Tyr) deacylase CDO11_RS03085 PF04539 Sigma-70 region 3 CDO11_RS03085 PF04542 Sigma-70 region 2 CDO11_RS03085 PF03979 Sigma-70 factor, region 1.1 CDO11_RS03085 PF00140 Sigma-70 factor, region 1.2 CDO11_RS03085 PF04546 Sigma-70, non-essential region CDO11_RS03085 PF04545 Sigma-70, region 4 CDO11_RS03100 PF00589 Phage integrase family CDO11_RS03120 PF07996 Type IV secretion system proteins CDO11_RS03135 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CDO11_RS03165 PF03852 DNA mismatch endonuclease Vsr CDO11_RS03170 PF00145 C-5 cytosine-specific DNA methylase CDO11_RS03250 PF00005 ABC transporter CDO11_RS03265 PF00593 TonB dependent receptor CDO11_RS03265 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS03320 PF02322 Cytochrome bd terminal oxidase subunit II CDO11_RS03325 PF01654 Cytochrome bd terminal oxidase subunit I CDO11_RS03340 PF00158 Sigma-54 interaction domain CDO11_RS03340 PF00072 Response regulator receiver domain CDO11_RS03340 PF02954 Bacterial regulatory protein, Fis family CDO11_RS03370 PF00672 HAMP domain CDO11_RS03370 PF06580 Histidine kinase CDO11_RS03370 PF02743 Cache domain CDO11_RS03370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS03385 PF13520 Amino acid permease CDO11_RS03405 PF05649 Peptidase family M13 CDO11_RS03405 PF01431 Peptidase family M13 CDO11_RS03420 PF00248 Aldo/keto reductase family CDO11_RS03425 PF03358 NADPH-dependent FMN reductase CDO11_RS03435 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDO11_RS03445 PF03167 Uracil DNA glycosylase superfamily CDO11_RS03455 PF02469 Fasciclin domain CDO11_RS03470 PF00999 Sodium/hydrogen exchanger family CDO11_RS03475 PF00005 ABC transporter CDO11_RS03480 PF01061 ABC-2 type transporter CDO11_RS03495 PF00082 Subtilase family CDO11_RS03495 PF04151 Bacterial pre-peptidase C-terminal domain CDO11_RS03505 PF08448 PAS fold CDO11_RS03505 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS03505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS03505 PF00072 Response regulator receiver domain CDO11_RS03505 PF13188 PAS domain CDO11_RS03510 PF00072 Response regulator receiver domain CDO11_RS03510 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS03530 PF13677 Membrane MotB of proton-channel complex MotA/MotB CDO11_RS03530 PF00691 OmpA family CDO11_RS03535 PF01618 MotA/TolQ/ExbB proton channel family CDO11_RS03545 PF01641 SelR domain CDO11_RS03555 PF01037 Lrp/AsnC ligand binding domain CDO11_RS03560 PF01266 FAD dependent oxidoreductase CDO11_RS03565 PF00842 Alanine racemase, C-terminal domain CDO11_RS03565 PF01168 Alanine racemase, N-terminal domain CDO11_RS03585 PF00989 PAS fold CDO11_RS03585 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS03585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS03600 PF07995 Glucose / Sorbosone dehydrogenase CDO11_RS03620 PF08468 Methyltransferase small domain N-terminal CDO11_RS03620 PF05175 Methyltransferase small domain CDO11_RS03625 PF01479 S4 domain CDO11_RS03625 PF00849 RNA pseudouridylate synthase CDO11_RS03630 PF13419 Haloacid dehalogenase-like hydrolase CDO11_RS03660 PF04461 Protein of unknown function (DUF520) CDO11_RS03665 PF00892 EamA-like transporter family CDO11_RS03670 PF09383 NIL domain CDO11_RS03670 PF00005 ABC transporter CDO11_RS03675 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_RS03680 PF03180 NLPA lipoprotein CDO11_RS03705 PF02817 e3 binding domain CDO11_RS03705 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDO11_RS03705 PF00364 Biotin-requiring enzyme CDO11_RS03715 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_RS03715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO11_RS03735 PF00119 ATP synthase A chain CDO11_RS03740 PF00137 ATP synthase subunit C CDO11_RS03745 PF00430 ATP synthase B/B' CF(0) CDO11_RS03750 PF00213 ATP synthase delta (OSCP) subunit CDO11_RS03755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_RS03755 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDO11_RS03755 PF00306 ATP synthase alpha/beta chain, C terminal domain CDO11_RS03760 PF00231 ATP synthase CDO11_RS03765 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDO11_RS03765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_RS03770 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CDO11_RS03775 PF01817 Chorismate mutase type II CDO11_RS03790 PF12804 MobA-like NTP transferase domain CDO11_RS03790 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_RS03790 PF14602 Hexapeptide repeat of succinyl-transferase CDO11_RS03825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_RS03830 PF01380 SIS domain CDO11_RS03860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_RS03865 PF05275 Copper resistance protein B precursor (CopB) CDO11_RS03870 PF00394 Multicopper oxidase CDO11_RS03870 PF07732 Multicopper oxidase CDO11_RS03870 PF07731 Multicopper oxidase CDO11_RS03885 PF01432 Peptidase family M3 CDO11_RS03895 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO11_RS03895 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO11_RS03900 PF07977 FabA-like domain CDO11_RS03910 PF00817 impB/mucB/samB family CDO11_RS03910 PF11799 impB/mucB/samB family C-terminal domain CDO11_RS03915 PF13419 Haloacid dehalogenase-like hydrolase CDO11_RS03925 PF13185 GAF domain CDO11_RS03940 PF01242 6-pyruvoyl tetrahydropterin synthase CDO11_RS03950 PF00271 Helicase conserved C-terminal domain CDO11_RS03950 PF00270 DEAD/DEAH box helicase CDO11_RS03965 PF13417 Glutathione S-transferase, N-terminal domain CDO11_RS03970 PF00437 Type II/IV secretion system protein CDO11_RS03990 PF00571 CBS domain CDO11_RS03990 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_RS03995 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO11_RS04005 PF01370 NAD dependent epimerase/dehydratase family CDO11_RS04055 PF00005 ABC transporter CDO11_RS04065 PF01012 Electron transfer flavoprotein domain CDO11_RS04065 PF00766 Electron transfer flavoprotein FAD-binding domain CDO11_RS04070 PF01012 Electron transfer flavoprotein domain CDO11_RS04075 PF16363 GDP-mannose 4,6 dehydratase CDO11_RS04080 PF00483 Nucleotidyl transferase CDO11_RS04085 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDO11_RS04090 PF04321 RmlD substrate binding domain CDO11_RS04095 PF00483 Nucleotidyl transferase CDO11_RS04095 PF01050 Mannose-6-phosphate isomerase CDO11_RS04100 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDO11_RS04100 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDO11_RS04100 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDO11_RS04100 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDO11_RS04105 PF01144 Coenzyme A transferase CDO11_RS04110 PF01144 Coenzyme A transferase CDO11_RS04115 PF01609 Transposase DDE domain CDO11_RS04115 PF05598 Transposase domain (DUF772) CDO11_RS04120 PF05045 Rhamnan synthesis protein F CDO11_RS04120 PF14307 Glycosyltransferase WbsX CDO11_RS04145 PF03886 ABC-type transport auxiliary lipoprotein component CDO11_RS04145 PF02470 MlaD protein CDO11_RS04150 PF00005 ABC transporter CDO11_RS04155 PF02405 Permease MlaE CDO11_RS04165 PF00816 H-NS histone family CDO11_RS04170 PF03129 Anticodon binding domain CDO11_RS04170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO11_RS04170 PF04073 Aminoacyl-tRNA editing domain CDO11_RS04180 PF01066 CDP-alcohol phosphatidyltransferase CDO11_RS04210 PF01609 Transposase DDE domain CDO11_RS04210 PF05598 Transposase domain (DUF772) CDO11_RS04225 PF01464 Transglycosylase SLT domain CDO11_RS04225 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CDO11_RS04230 PF00544 Pectate lyase CDO11_RS04280 PF08264 Anticodon-binding domain of tRNA CDO11_RS04280 PF00133 tRNA synthetases class I (I, L, M and V) CDO11_RS04280 PF10458 Valyl tRNA synthetase tRNA binding arm CDO11_RS04295 PF00883 Cytosol aminopeptidase family, catalytic domain CDO11_RS04295 PF02789 Cytosol aminopeptidase family, N-terminal domain CDO11_RS04305 PF03739 Lipopolysaccharide export system permease LptF/LptG CDO11_RS04320 PF00589 Phage integrase family CDO11_RS04320 PF02899 Phage integrase, N-terminal SAM-like domain CDO11_RS04325 PF13098 Thioredoxin-like domain CDO11_RS04325 PF10411 Disulfide bond isomerase protein N-terminus CDO11_RS04330 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CDO11_RS04330 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CDO11_RS04330 PF02769 AIR synthase related protein, C-terminal domain CDO11_RS04340 PF05662 Coiled stalk of trimeric autotransporter adhesin CDO11_RS04340 PF05658 Head domain of trimeric autotransporter adhesin CDO11_RS04340 PF13018 Extended Signal Peptide of Type V secretion system CDO11_RS04340 PF03895 YadA-like membrane anchor domain CDO11_RS04360 PF00437 Type II/IV secretion system protein CDO11_RS04360 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDO11_RS04370 PF00482 Type II secretion system (T2SS), protein F CDO11_RS04375 PF08334 Type II secretion system (T2SS), protein G CDO11_RS04380 PF12019 Type II transport protein GspH CDO11_RS04385 PF07963 Prokaryotic N-terminal methylation motif CDO11_RS04395 PF03934 Type II secretion system (T2SS), protein K CDO11_RS04400 PF05137 Fimbrial assembly protein (PilN) CDO11_RS04405 PF10741 Type II secretion system (T2SS), protein M subtype b CDO11_RS04415 PF03958 Bacterial type II/III secretion system short domain CDO11_RS04415 PF00263 Bacterial type II and III secretion system protein CDO11_RS04430 PF00392 Bacterial regulatory proteins, gntR family CDO11_RS04430 PF07702 UTRA domain CDO11_RS04445 PF00593 TonB dependent receptor CDO11_RS04445 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS04490 PF05598 Transposase domain (DUF772) CDO11_RS04490 PF01609 Transposase DDE domain CDO11_RS04495 PF09827 CRISPR associated protein Cas2 CDO11_RS04500 PF01867 CRISPR associated protein Cas1 CDO11_RS04520 PF09704 CRISPR-associated protein (Cas_Cas5) CDO11_RS04540 PF02545 Maf-like protein CDO11_RS04545 PF02620 Large ribosomal RNA subunit accumulation protein YceD CDO11_RS04550 PF01783 Ribosomal L32p protein family CDO11_RS04555 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDO11_RS04555 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDO11_RS04565 PF00698 Acyl transferase domain CDO11_RS04575 PF00550 Phosphopantetheine attachment site CDO11_RS04580 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO11_RS04580 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO11_RS04585 PF00425 chorismate binding enzyme CDO11_RS04585 PF04715 Anthranilate synthase component I, N terminal region CDO11_RS04590 PF02618 YceG-like family CDO11_RS04595 PF09115 DNA polymerase III, delta subunit, C terminal CDO11_RS04615 PF02954 Bacterial regulatory protein, Fis family CDO11_RS04615 PF00158 Sigma-54 interaction domain CDO11_RS04615 PF06506 Propionate catabolism activator CDO11_RS04625 PF00285 Citrate synthase, C-terminal domain CDO11_RS04630 PF00694 Aconitase C-terminal domain CDO11_RS04630 PF00330 Aconitase family (aconitate hydratase) CDO11_RS04645 PF04303 PrpF protein CDO11_RS04650 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS04650 PF00593 TonB dependent receptor CDO11_RS04700 PF00665 Integrase core domain CDO11_RS04700 PF13936 Helix-turn-helix domain CDO11_RS04710 PF08534 Redoxin CDO11_RS04720 PF00226 DnaJ domain CDO11_RS04720 PF01556 DnaJ C terminal domain CDO11_RS04725 PF00072 Response regulator receiver domain CDO11_RS04730 PF01145 SPFH domain / Band 7 family CDO11_RS04730 PF12221 Bacterial membrane protein N terminal CDO11_RS04735 PF01145 SPFH domain / Band 7 family CDO11_RS04745 PF00709 Adenylosuccinate synthetase CDO11_RS04750 PF01433 Peptidase family M1 domain CDO11_RS04750 PF11838 ERAP1-like C-terminal domain CDO11_RS04760 PF05598 Transposase domain (DUF772) CDO11_RS04800 PF03279 Bacterial lipid A biosynthesis acyltransferase CDO11_RS04805 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CDO11_RS04810 PF02321 Outer membrane efflux protein CDO11_RS04835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS04840 PF00330 Aconitase family (aconitate hydratase) CDO11_RS04845 PF00694 Aconitase C-terminal domain CDO11_RS04855 PF00180 Isocitrate/isopropylmalate dehydrogenase CDO11_RS04860 PF00682 HMGL-like CDO11_RS04860 PF08502 LeuA allosteric (dimerisation) domain CDO11_RS04865 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_RS04875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO11_RS04875 PF00205 Thiamine pyrophosphate enzyme, central domain CDO11_RS04875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO11_RS04880 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CDO11_RS04880 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CDO11_RS04890 PF01964 Radical SAM ThiC family CDO11_RS04890 PF13667 ThiC-associated domain CDO11_RS04895 PF18500 CadC C-terminal domain 1 CDO11_RS04895 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS04900 PF12833 Helix-turn-helix domain CDO11_RS04905 PF00593 TonB dependent receptor CDO11_RS04905 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS04920 PF00719 Inorganic pyrophosphatase CDO11_RS04940 PF03030 Inorganic H+ pyrophosphatase CDO11_RS04960 PF00365 Phosphofructokinase CDO11_RS04970 PF08245 Mur ligase middle domain CDO11_RS04970 PF02875 Mur ligase family, glutamate ligase domain CDO11_RS04970 PF01225 Mur ligase family, catalytic domain CDO11_RS04980 PF01062 Bestrophin, RFP-TM, chloride channel CDO11_RS05000 PF00043 Glutathione S-transferase, C-terminal domain CDO11_RS05000 PF02798 Glutathione S-transferase, N-terminal domain CDO11_RS05005 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDO11_RS05005 PF00056 lactate/malate dehydrogenase, NAD binding domain CDO11_RS05010 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDO11_RS05015 PF00009 Elongation factor Tu GTP binding domain CDO11_RS05015 PF00679 Elongation factor G C-terminus CDO11_RS05015 PF03144 Elongation factor Tu domain 2 CDO11_RS05035 PF01474 Class-II DAHP synthetase family CDO11_RS05045 PF02600 Disulfide bond formation protein DsbB CDO11_RS05100 PF05598 Transposase domain (DUF772) CDO11_RS05100 PF01609 Transposase DDE domain CDO11_RS05180 PF01609 Transposase DDE domain CDO11_RS05180 PF05598 Transposase domain (DUF772) CDO11_RS05205 PF03009 Glycerophosphoryl diester phosphodiesterase family CDO11_RS05230 PF00180 Isocitrate/isopropylmalate dehydrogenase CDO11_RS05230 PF18324 Hypothetical protein TT1725 CDO11_RS05280 PF05698 Bacterial trigger factor protein (TF) C-terminus CDO11_RS05280 PF05697 Bacterial trigger factor protein (TF) CDO11_RS05285 PF00574 Clp protease CDO11_RS05290 PF06689 ClpX C4-type zinc finger CDO11_RS05290 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_RS05290 PF07724 AAA domain (Cdc48 subfamily) CDO11_RS05295 PF02190 ATP-dependent protease La (LON) substrate-binding domain CDO11_RS05295 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_RS05295 PF05362 Lon protease (S16) C-terminal proteolytic domain CDO11_RS05300 PF00216 Bacterial DNA-binding protein CDO11_RS05325 PF05257 CHAP domain CDO11_RS05325 PF01476 LysM domain CDO11_RS05330 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDO11_RS05330 PF00753 Metallo-beta-lactamase superfamily CDO11_RS05340 PF00075 RNase H CDO11_RS05345 PF00929 Exonuclease CDO11_RS05440 PF13356 Arm DNA-binding domain CDO11_RS05440 PF00589 Phage integrase family CDO11_RS05450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CDO11_RS05460 PF12706 Beta-lactamase superfamily domain CDO11_RS05460 PF00753 Metallo-beta-lactamase superfamily CDO11_RS05465 PF06463 Molybdenum Cofactor Synthesis C CDO11_RS05465 PF04055 Radical SAM superfamily CDO11_RS05475 PF01967 MoaC family CDO11_RS05480 PF02597 ThiS family CDO11_RS05485 PF02391 MoaE protein CDO11_RS05500 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CDO11_RS05500 PF12170 DNA polymerase III tau subunit V interacting with alpha CDO11_RS05500 PF12169 DNA polymerase III subunits gamma and tau domain III CDO11_RS05505 PF02575 YbaB/EbfC DNA-binding family CDO11_RS05510 PF02132 RecR protein CDO11_RS05510 PF13662 Toprim domain CDO11_RS05515 PF01230 HIT domain CDO11_RS05525 PF01841 Transglutaminase-like superfamily CDO11_RS05525 PF13559 Domain of unknown function (DUF4129) CDO11_RS05525 PF11992 Domain of unknown function (DUF3488) CDO11_RS05535 PF07726 ATPase family associated with various cellular activities (AAA) CDO11_RS05535 PF17863 AAA lid domain CDO11_RS05555 PF01327 Polypeptide deformylase CDO11_RS05605 PF01609 Transposase DDE domain CDO11_RS05605 PF05598 Transposase domain (DUF772) CDO11_RS05635 PF00462 Glutaredoxin CDO11_RS05640 PF01522 Polysaccharide deacetylase CDO11_RS05660 PF00155 Aminotransferase class I and II CDO11_RS05665 PF03193 RsgA GTPase CDO11_RS05680 PF00128 Alpha amylase, catalytic domain CDO11_RS05700 PF00356 Bacterial regulatory proteins, lacI family CDO11_RS05705 PF00106 short chain dehydrogenase CDO11_RS05710 PF03600 Citrate transporter CDO11_RS05725 PF00072 Response regulator receiver domain CDO11_RS05725 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS05730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS05730 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS05730 PF08521 Two-component sensor kinase N-terminal CDO11_RS05740 PF00072 Response regulator receiver domain CDO11_RS05740 PF00196 Bacterial regulatory proteins, luxR family CDO11_RS05760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS05760 PF03466 LysR substrate binding domain CDO11_RS05770 PF07690 Major Facilitator Superfamily CDO11_RS05775 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS05775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS05790 PF00375 Sodium:dicarboxylate symporter family CDO11_RS05795 PF00390 Malic enzyme, N-terminal domain CDO11_RS05795 PF03949 Malic enzyme, NAD binding domain CDO11_RS05795 PF01515 Phosphate acetyl/butaryl transferase CDO11_RS05830 PF02581 Thiamine monophosphate synthase CDO11_RS05835 PF00301 Rubredoxin CDO11_RS05840 PF13369 Transglutaminase-like superfamily CDO11_RS05850 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CDO11_RS05860 PF01812 5-formyltetrahydrofolate cyclo-ligase family CDO11_RS05870 PF05164 Cell division protein ZapA CDO11_RS05880 PF03695 Uncharacterised protein family (UPF0149) CDO11_RS05885 PF05195 Aminopeptidase P, N-terminal domain CDO11_RS05885 PF00557 Metallopeptidase family M24 CDO11_RS05905 PF00557 Metallopeptidase family M24 CDO11_RS05920 PF06969 HemN C-terminal domain CDO11_RS05920 PF04055 Radical SAM superfamily CDO11_RS05925 PF01725 Ham1 family CDO11_RS05935 PF03725 3' exoribonuclease family, domain 2 CDO11_RS05935 PF01138 3' exoribonuclease family, domain 1 CDO11_RS05940 PF03755 YicC-like family, N-terminal region CDO11_RS05940 PF08340 Domain of unknown function (DUF1732) CDO11_RS05945 PF00625 Guanylate kinase CDO11_RS05960 PF01192 RNA polymerase Rpb6 CDO11_RS05965 PF02824 TGS domain CDO11_RS05965 PF13291 ACT domain CDO11_RS05965 PF04607 Region found in RelA / SpoT proteins CDO11_RS05970 PF01042 Endoribonuclease L-PSP CDO11_RS05975 PF00270 DEAD/DEAH box helicase CDO11_RS05975 PF00271 Helicase conserved C-terminal domain CDO11_RS05975 PF17191 RecG wedge domain CDO11_RS05980 PF01156 Inosine-uridine preferring nucleoside hydrolase CDO11_RS05985 PF01197 Ribosomal protein L31 CDO11_RS05990 PF00285 Citrate synthase, C-terminal domain CDO11_RS06000 PF00905 Penicillin binding protein transpeptidase domain CDO11_RS06000 PF17092 Penicillin-binding protein OB-like domain CDO11_RS06000 PF00912 Transglycosylase CDO11_RS06005 PF11104 Type IV pilus assembly protein PilM; CDO11_RS06010 PF05137 Fimbrial assembly protein (PilN) CDO11_RS06015 PF04350 Pilus assembly protein, PilO CDO11_RS06020 PF04351 Pilus assembly protein, PilP CDO11_RS06025 PF07660 Secretin and TonB N terminus short domain CDO11_RS06025 PF00263 Bacterial type II and III secretion system protein CDO11_RS06025 PF11741 AMIN domain CDO11_RS06025 PF03958 Bacterial type II/III secretion system short domain CDO11_RS06050 PF07726 ATPase family associated with various cellular activities (AAA) CDO11_RS06050 PF17863 AAA lid domain CDO11_RS06070 PF07584 Aerotolerance regulator N-terminal CDO11_RS06070 PF00092 von Willebrand factor type A domain CDO11_RS06090 PF00375 Sodium:dicarboxylate symporter family CDO11_RS06095 PF00456 Transketolase, thiamine diphosphate binding domain CDO11_RS06095 PF02780 Transketolase, C-terminal domain CDO11_RS06095 PF02779 Transketolase, pyrimidine binding domain CDO11_RS06100 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS06100 PF00593 TonB dependent receptor CDO11_RS06105 PF01551 Peptidase family M23 CDO11_RS06105 PF04225 Opacity-associated protein A LysM-like domain CDO11_RS06110 PF03734 L,D-transpeptidase catalytic domain CDO11_RS06110 PF01476 LysM domain CDO11_RS06135 PF00501 AMP-binding enzyme CDO11_RS06155 PF00072 Response regulator receiver domain CDO11_RS06155 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS06160 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS06160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS06160 PF08521 Two-component sensor kinase N-terminal CDO11_RS06180 PF03459 TOBE domain CDO11_RS06180 PF00005 ABC transporter CDO11_RS06185 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_RS06195 PF04273 Putative phosphatase (DUF442) CDO11_RS06195 PF00753 Metallo-beta-lactamase superfamily CDO11_RS06230 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDO11_RS06230 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDO11_RS06255 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS06255 PF00072 Response regulator receiver domain CDO11_RS06265 PF08443 RimK-like ATP-grasp domain CDO11_RS06265 PF18030 RimK PreATP-grasp domain CDO11_RS06270 PF01609 Transposase DDE domain CDO11_RS06270 PF05598 Transposase domain (DUF772) CDO11_RS06305 PF00027 Cyclic nucleotide-binding domain CDO11_RS06305 PF00520 Ion transport protein CDO11_RS06310 PF00202 Aminotransferase class-III CDO11_RS06325 PF01593 Flavin containing amine oxidoreductase CDO11_RS06330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDO11_RS06330 PF00034 Cytochrome c CDO11_RS06345 PF00127 Copper binding proteins, plastocyanin/azurin family CDO11_RS06355 PF00202 Aminotransferase class-III CDO11_RS06375 PF00665 Integrase core domain CDO11_RS06375 PF13333 Integrase core domain CDO11_RS06375 PF13276 HTH-like domain CDO11_RS06400 PF03377 TAL effector repeat CDO11_RS06420 PF03377 TAL effector repeat CDO11_RS06435 PF03377 TAL effector repeat CDO11_RS06455 PF01208 Uroporphyrinogen decarboxylase (URO-D) CDO11_RS06465 PF01761 3-dehydroquinate synthase CDO11_RS06470 PF01202 Shikimate kinase CDO11_RS06475 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CDO11_RS06475 PF01243 Pyridoxamine 5'-phosphate oxidase CDO11_RS06485 PF04012 PspA/IM30 family CDO11_RS06510 PF03738 Glutathionylspermidine synthase preATP-grasp CDO11_RS06525 PF09278 MerR, DNA binding CDO11_RS06525 PF00376 MerR family regulatory protein CDO11_RS06555 PF04820 Tryptophan halogenase CDO11_RS06560 PF12706 Beta-lactamase superfamily domain CDO11_RS06580 PF00324 Amino acid permease CDO11_RS06585 PF00196 Bacterial regulatory proteins, luxR family CDO11_RS06590 PF00561 alpha/beta hydrolase fold CDO11_RS06600 PF00324 Amino acid permease CDO11_RS06620 PF01654 Cytochrome bd terminal oxidase subunit I CDO11_RS06625 PF02322 Cytochrome bd terminal oxidase subunit II CDO11_RS06630 PF00756 Putative esterase CDO11_RS06645 PF05524 PEP-utilising enzyme, N-terminal CDO11_RS06645 PF00391 PEP-utilising enzyme, mobile domain CDO11_RS06645 PF02896 PEP-utilising enzyme, TIM barrel domain CDO11_RS06650 PF00381 PTS HPr component phosphorylation site CDO11_RS06660 PF03668 P-loop ATPase protein family CDO11_RS06665 PF02603 HPr Serine kinase N terminus CDO11_RS06665 PF07475 HPr Serine kinase C-terminal domain CDO11_RS06670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDO11_RS06675 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CDO11_RS06680 PF04963 Sigma-54 factor, core binding domain CDO11_RS06680 PF04552 Sigma-54, DNA binding domain CDO11_RS06680 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDO11_RS06685 PF00005 ABC transporter CDO11_RS06690 PF03968 OstA-like protein CDO11_RS06705 PF01380 SIS domain CDO11_RS06705 PF00571 CBS domain CDO11_RS06710 PF01722 BolA-like protein CDO11_RS06720 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDO11_RS06740 PF00551 Formyl transferase CDO11_RS06755 PF02769 AIR synthase related protein, C-terminal domain CDO11_RS06755 PF00586 AIR synthase related protein, N-terminal domain CDO11_RS06765 PF01594 AI-2E family transporter CDO11_RS06770 PF00308 Bacterial dnaA protein CDO11_RS06775 PF00483 Nucleotidyl transferase CDO11_RS06780 PF01636 Phosphotransferase enzyme family CDO11_RS06795 PF01546 Peptidase family M20/M25/M40 CDO11_RS06795 PF07687 Peptidase dimerisation domain CDO11_RS06840 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CDO11_RS06845 PF01263 Aldose 1-epimerase CDO11_RS06850 PF01578 Cytochrome C assembly protein CDO11_RS06860 PF00448 SRP54-type protein, GTPase domain CDO11_RS06860 PF02881 SRP54-type protein, helical bundle domain CDO11_RS06860 PF02978 Signal peptide binding domain CDO11_RS06875 PF03060 Nitronate monooxygenase CDO11_RS06885 PF00886 Ribosomal protein S16 CDO11_RS06890 PF01782 RimM N-terminal domain CDO11_RS06890 PF05239 PRC-barrel domain CDO11_RS06895 PF01746 tRNA (Guanine-1)-methyltransferase CDO11_RS06900 PF01245 Ribosomal protein L19 CDO11_RS06910 PF01554 MatE CDO11_RS06915 PF01479 S4 domain CDO11_RS06945 PF01541 GIY-YIG catalytic domain CDO11_RS06950 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_RS06950 PF07724 AAA domain (Cdc48 subfamily) CDO11_RS06950 PF17871 AAA lid domain CDO11_RS06950 PF02861 Clp amino terminal domain, pathogenicity island component CDO11_RS06950 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_RS06990 PF00593 TonB dependent receptor CDO11_RS06990 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS07015 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CDO11_RS07015 PF12557 Cob(I)alamin adenosyltransferase N terminal CDO11_RS07025 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CDO11_RS07030 PF02277 Phosphoribosyltransferase CDO11_RS07040 PF02654 Cobalamin-5-phosphate synthase CDO11_RS07050 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDO11_RS07050 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDO11_RS07055 PF04183 IucA / IucC family CDO11_RS07055 PF06276 Ferric iron reductase FhuF-like transporter CDO11_RS07065 PF06276 Ferric iron reductase FhuF-like transporter CDO11_RS07065 PF04183 IucA / IucC family CDO11_RS07075 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS07075 PF07660 Secretin and TonB N terminus short domain CDO11_RS07075 PF00593 TonB dependent receptor CDO11_RS07090 PF02254 TrkA-N domain CDO11_RS07090 PF00999 Sodium/hydrogen exchanger family CDO11_RS07100 PF00593 TonB dependent receptor CDO11_RS07100 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS07105 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS07105 PF00593 TonB dependent receptor CDO11_RS07120 PF00593 TonB dependent receptor CDO11_RS07120 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS07125 PF12848 ABC transporter CDO11_RS07125 PF00005 ABC transporter CDO11_RS07140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS07140 PF03466 LysR substrate binding domain CDO11_RS07150 PF13472 GDSL-like Lipase/Acylhydrolase family CDO11_RS07150 PF07859 alpha/beta hydrolase fold CDO11_RS07170 PF12833 Helix-turn-helix domain CDO11_RS07175 PF00183 Hsp90 protein CDO11_RS07175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS07205 PF00872 Transposase, Mutator family CDO11_RS07210 PF00120 Glutamine synthetase, catalytic domain CDO11_RS07215 PF04204 Homoserine O-succinyltransferase CDO11_RS07220 PF01810 LysE type translocator CDO11_RS07225 PF07722 Peptidase C26 CDO11_RS07240 PF05598 Transposase domain (DUF772) CDO11_RS07240 PF01609 Transposase DDE domain CDO11_RS07250 PF00266 Aminotransferase class-V CDO11_RS07280 PF00355 Rieske [2Fe-2S] domain CDO11_RS07295 PF00266 Aminotransferase class-V CDO11_RS07300 PF01458 Uncharacterized protein family (UPF0051) CDO11_RS07305 PF00005 ABC transporter CDO11_RS07310 PF01458 Uncharacterized protein family (UPF0051) CDO11_RS07315 PF02082 Transcriptional regulator CDO11_RS07335 PF01965 DJ-1/PfpI family CDO11_RS07375 PF14748 Pyrroline-5-carboxylate reductase dimerisation CDO11_RS07375 PF03807 NADP oxidoreductase coenzyme F420-dependent CDO11_RS07380 PF01168 Alanine racemase, N-terminal domain CDO11_RS07385 PF00437 Type II/IV secretion system protein CDO11_RS07390 PF00437 Type II/IV secretion system protein CDO11_RS07415 PF13302 Acetyltransferase (GNAT) domain CDO11_RS07415 PF00958 GMP synthase C terminal domain CDO11_RS07415 PF03352 Methyladenine glycosylase CDO11_RS07415 PF13673 Acetyltransferase (GNAT) domain CDO11_RS07415 PF00117 Glutamine amidotransferase class-I CDO11_RS07425 PF02622 Uncharacterized ACR, COG1678 CDO11_RS07430 PF03652 Holliday junction resolvase CDO11_RS07435 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDO11_RS07435 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDO11_RS07445 PF02566 OsmC-like protein CDO11_RS07455 PF02567 Phenazine biosynthesis-like protein CDO11_RS07465 PF01842 ACT domain CDO11_RS07465 PF00696 Amino acid kinase family CDO11_RS07480 PF08245 Mur ligase middle domain CDO11_RS07495 PF00348 Polyprenyl synthetase CDO11_RS07500 PF00436 Single-strand binding protein family CDO11_RS07505 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS07505 PF00563 EAL domain CDO11_RS07505 PF01590 GAF domain CDO11_RS07505 PF00360 Phytochrome region CDO11_RS07540 PF04328 Selenoprotein, putative CDO11_RS07545 PF02554 Carbon starvation protein CstA CDO11_RS07545 PF13722 5TM C-terminal transporter carbon starvation CstA CDO11_RS07550 PF02678 Pirin CDO11_RS07550 PF05726 Pirin C-terminal cupin domain CDO11_RS07560 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS07580 PF13296 Putative type VI secretion system Rhs element Vgr CDO11_RS07580 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS07580 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CDO11_RS07610 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CDO11_RS07610 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS07610 PF13296 Putative type VI secretion system Rhs element Vgr CDO11_RS07665 PF05726 Pirin C-terminal cupin domain CDO11_RS07665 PF02678 Pirin CDO11_RS07675 PF04493 Endonuclease V CDO11_RS07680 PF00300 Histidine phosphatase superfamily (branch 1) CDO11_RS07695 PF01431 Peptidase family M13 CDO11_RS07695 PF05649 Peptidase family M13 CDO11_RS07705 PF01339 CheB methylesterase CDO11_RS07705 PF00072 Response regulator receiver domain CDO11_RS07710 PF03705 CheR methyltransferase, all-alpha domain CDO11_RS07710 PF01739 CheR methyltransferase, SAM binding domain CDO11_RS07715 PF13426 PAS domain CDO11_RS07715 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS07715 PF00563 EAL domain CDO11_RS07720 PF01584 CheW-like domain CDO11_RS07725 PF00672 HAMP domain CDO11_RS07725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_RS07725 PF02203 Tar ligand binding domain homologue CDO11_RS07730 PF01584 CheW-like domain CDO11_RS07730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS07730 PF09078 CheY binding CDO11_RS07730 PF02895 Signal transducing histidine kinase, homodimeric domain CDO11_RS07730 PF01627 Hpt domain CDO11_RS07740 PF00270 DEAD/DEAH box helicase CDO11_RS07740 PF02559 CarD-like/TRCF domain CDO11_RS07740 PF17757 UvrB interaction domain CDO11_RS07740 PF00271 Helicase conserved C-terminal domain CDO11_RS07740 PF03461 TRCF domain CDO11_RS07750 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CDO11_RS07770 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS07770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS07770 PF00672 HAMP domain CDO11_RS07795 PF01609 Transposase DDE domain CDO11_RS07795 PF05598 Transposase domain (DUF772) CDO11_RS07820 PF05598 Transposase domain (DUF772) CDO11_RS07820 PF01609 Transposase DDE domain CDO11_RS07825 PF01609 Transposase DDE domain CDO11_RS07825 PF05598 Transposase domain (DUF772) CDO11_RS07860 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDO11_RS07865 PF01475 Ferric uptake regulator family CDO11_RS07910 PF00313 'Cold-shock' DNA-binding domain CDO11_RS07925 PF00899 ThiF family CDO11_RS07930 PF01026 TatD related DNase CDO11_RS07945 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_RS07945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_RS07945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_RS07955 PF13417 Glutathione S-transferase, N-terminal domain CDO11_RS07960 PF00733 Asparagine synthase CDO11_RS07960 PF13537 Glutamine amidotransferase domain CDO11_RS07965 PF03358 NADPH-dependent FMN reductase CDO11_RS07970 PF00772 DnaB-like helicase N terminal domain CDO11_RS07970 PF03796 DnaB-like helicase C terminal domain CDO11_RS07975 PF03441 FAD binding domain of DNA photolyase CDO11_RS07975 PF00875 DNA photolyase CDO11_RS07990 PF00691 OmpA family CDO11_RS07990 PF05736 OprF membrane domain CDO11_RS08025 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_RS08025 PF00107 Zinc-binding dehydrogenase CDO11_RS08030 PF00654 Voltage gated chloride channel CDO11_RS08040 PF05598 Transposase domain (DUF772) CDO11_RS08040 PF01609 Transposase DDE domain CDO11_RS08050 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDO11_RS08050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDO11_RS08055 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_RS08055 PF12833 Helix-turn-helix domain CDO11_RS08055 PF02805 Metal binding domain of Ada CDO11_RS08055 PF06029 AlkA N-terminal domain CDO11_RS08130 PF03737 Aldolase/RraA CDO11_RS08140 PF00999 Sodium/hydrogen exchanger family CDO11_RS08185 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDO11_RS08185 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDO11_RS08190 PF12833 Helix-turn-helix domain CDO11_RS08190 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_RS08190 PF06029 AlkA N-terminal domain CDO11_RS08190 PF02805 Metal binding domain of Ada CDO11_RS08235 PF00271 Helicase conserved C-terminal domain CDO11_RS08235 PF00270 DEAD/DEAH box helicase CDO11_RS08235 PF03880 DbpA RNA binding domain CDO11_RS08240 PF00563 EAL domain CDO11_RS08240 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS08240 PF08448 PAS fold CDO11_RS08245 PF00849 RNA pseudouridylate synthase CDO11_RS08245 PF01479 S4 domain CDO11_RS08270 PF03737 Aldolase/RraA CDO11_RS08275 PF00144 Beta-lactamase CDO11_RS08280 PF00999 Sodium/hydrogen exchanger family CDO11_RS08285 PF00672 HAMP domain CDO11_RS08285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS08285 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS08290 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS08290 PF00072 Response regulator receiver domain CDO11_RS08295 PF02321 Outer membrane efflux protein CDO11_RS08310 PF00873 AcrB/AcrD/AcrF family CDO11_RS08320 PF00664 ABC transporter transmembrane region CDO11_RS08320 PF00005 ABC transporter CDO11_RS08345 PF01609 Transposase DDE domain CDO11_RS08345 PF05598 Transposase domain (DUF772) CDO11_RS08360 PF01609 Transposase DDE domain CDO11_RS08360 PF05598 Transposase domain (DUF772) CDO11_RS08400 PF01121 Dephospho-CoA kinase CDO11_RS08405 PF01478 Type IV leader peptidase family CDO11_RS08405 PF06750 Bacterial Peptidase A24 N-terminal domain CDO11_RS08410 PF00482 Type II secretion system (T2SS), protein F CDO11_RS08415 PF07963 Prokaryotic N-terminal methylation motif CDO11_RS08415 PF00114 Pilin (bacterial filament) CDO11_RS08420 PF08019 Phosphoethanolamine transferase EptA/EptB CDO11_RS08420 PF00884 Sulfatase CDO11_RS08435 PF00437 Type II/IV secretion system protein CDO11_RS08435 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDO11_RS08450 PF00072 Response regulator receiver domain CDO11_RS08450 PF00158 Sigma-54 interaction domain CDO11_RS08450 PF02954 Bacterial regulatory protein, Fis family CDO11_RS08455 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS08455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS08460 PF08442 ATP-grasp domain CDO11_RS08460 PF00549 CoA-ligase CDO11_RS08465 PF00549 CoA-ligase CDO11_RS08465 PF02629 CoA binding domain CDO11_RS08480 PF02540 NAD synthase CDO11_RS08480 PF00795 Carbon-nitrogen hydrolase CDO11_RS08485 PF13525 Outer membrane lipoprotein CDO11_RS08490 PF00849 RNA pseudouridylate synthase CDO11_RS08495 PF02578 Multi-copper polyphenol oxidoreductase laccase CDO11_RS08510 PF00982 Glycosyltransferase family 20 CDO11_RS08515 PF00723 Glycosyl hydrolases family 15 CDO11_RS08520 PF02358 Trehalose-phosphatase CDO11_RS08530 PF00593 TonB dependent receptor CDO11_RS08530 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS08560 PF04376 Arginine-tRNA-protein transferase, N terminus CDO11_RS08560 PF04377 Arginine-tRNA-protein transferase, C terminus CDO11_RS08580 PF08281 Sigma-70, region 4 CDO11_RS08580 PF04542 Sigma-70 region 2 CDO11_RS08595 PF00378 Enoyl-CoA hydratase/isomerase CDO11_RS08610 PF00005 ABC transporter CDO11_RS08610 PF17755 UvrA DNA-binding domain CDO11_RS08610 PF17760 UvrA interaction domain CDO11_RS08615 PF00829 Ribosomal prokaryotic L21 protein CDO11_RS08620 PF01016 Ribosomal L27 protein CDO11_RS08625 PF01018 GTP1/OBG CDO11_RS08625 PF01926 50S ribosome-binding GTPase CDO11_RS08630 PF01649 Ribosomal protein S20 CDO11_RS08635 PF03023 Lipid II flippase MurJ CDO11_RS08640 PF06574 FAD synthetase CDO11_RS08640 PF01687 Riboflavin kinase CDO11_RS08645 PF06827 Zinc finger found in FPG and IleRS CDO11_RS08645 PF08264 Anticodon-binding domain of tRNA CDO11_RS08645 PF00133 tRNA synthetases class I (I, L, M and V) CDO11_RS08650 PF01252 Signal peptidase (SPase) II CDO11_RS08655 PF02401 LytB protein CDO11_RS08665 PF06481 COX Aromatic Rich Motif CDO11_RS08665 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDO11_RS08670 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO11_RS08675 PF00510 Cytochrome c oxidase subunit III CDO11_RS08680 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CDO11_RS08690 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS08690 PF06715 Gp5 C-terminal repeat (3 copies) CDO11_RS08700 PF05593 RHS Repeat CDO11_RS08700 PF03527 RHS protein CDO11_RS08765 PF05188 MutS domain II CDO11_RS08765 PF01624 MutS domain I CDO11_RS08765 PF05192 MutS domain III CDO11_RS08765 PF05190 MutS family domain IV CDO11_RS08765 PF00488 MutS domain V CDO11_RS08790 PF18073 Rubredoxin metal binding domain CDO11_RS08830 PF01336 OB-fold nucleic acid binding domain CDO11_RS08830 PF00152 tRNA synthetases class II (D, K and N) CDO11_RS08830 PF02938 GAD domain CDO11_RS08845 PF01709 Transcriptional regulator CDO11_RS08850 PF02075 Crossover junction endodeoxyribonuclease RuvC CDO11_RS08855 PF07499 RuvA, C-terminal domain CDO11_RS08855 PF01330 RuvA N terminal domain CDO11_RS08860 PF02705 K+ potassium transporter CDO11_RS08865 PF05491 RuvB C-terminal winged helix domain CDO11_RS08865 PF17864 RuvB AAA lid domain CDO11_RS08865 PF05496 Holliday junction DNA helicase RuvB P-loop domain CDO11_RS08870 PF03061 Thioesterase superfamily CDO11_RS08875 PF01618 MotA/TolQ/ExbB proton channel family CDO11_RS08880 PF02472 Biopolymer transport protein ExbD/TolR CDO11_RS08890 PF07676 WD40-like Beta Propeller Repeat CDO11_RS08890 PF04052 TolB amino-terminal domain CDO11_RS08895 PF00691 OmpA family CDO11_RS08905 PF04055 Radical SAM superfamily CDO11_RS08915 PF00849 RNA pseudouridylate synthase CDO11_RS08915 PF01479 S4 domain CDO11_RS08935 PF01810 LysE type translocator CDO11_RS08965 PF05598 Transposase domain (DUF772) CDO11_RS08975 PF06508 Queuosine biosynthesis protein QueC CDO11_RS09000 PF00271 Helicase conserved C-terminal domain CDO11_RS09000 PF09382 RQC domain CDO11_RS09000 PF16124 RecQ zinc-binding CDO11_RS09000 PF00570 HRDC domain CDO11_RS09000 PF00270 DEAD/DEAH box helicase CDO11_RS09010 PF00210 Ferritin-like domain CDO11_RS09015 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CDO11_RS09015 PF00271 Helicase conserved C-terminal domain CDO11_RS09015 PF00270 DEAD/DEAH box helicase CDO11_RS09015 PF11898 Domain of unknown function (DUF3418) CDO11_RS09015 PF04408 Helicase associated domain (HA2) CDO11_RS09045 PF04055 Radical SAM superfamily CDO11_RS09045 PF13186 Iron-sulfur cluster-binding domain CDO11_RS09050 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CDO11_RS09055 PF03070 TENA/THI-4/PQQC family CDO11_RS09060 PF12706 Beta-lactamase superfamily domain CDO11_RS09065 PF08042 PqqA family CDO11_RS09070 PF13291 ACT domain CDO11_RS09070 PF04607 Region found in RelA / SpoT proteins CDO11_RS09070 PF02824 TGS domain CDO11_RS09080 PF00535 Glycosyl transferase family 2 CDO11_RS09085 PF00912 Transglycosylase CDO11_RS09085 PF00905 Penicillin binding protein transpeptidase domain CDO11_RS09085 PF14814 Bifunctional transglycosylase second domain CDO11_RS09095 PF13307 Helicase C-terminal domain CDO11_RS09095 PF04851 Type III restriction enzyme, res subunit CDO11_RS09100 PF00814 Glycoprotease family CDO11_RS09105 PF03747 ADP-ribosylglycohydrolase CDO11_RS09115 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CDO11_RS09115 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CDO11_RS09120 PF00072 Response regulator receiver domain CDO11_RS09125 PF00072 Response regulator receiver domain CDO11_RS09130 PF01584 CheW-like domain CDO11_RS09135 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDO11_RS09135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_RS09140 PF02895 Signal transducing histidine kinase, homodimeric domain CDO11_RS09140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS09140 PF01627 Hpt domain CDO11_RS09140 PF00072 Response regulator receiver domain CDO11_RS09140 PF01584 CheW-like domain CDO11_RS09155 PF13302 Acetyltransferase (GNAT) domain CDO11_RS09185 PF01112 Asparaginase CDO11_RS09190 PF03932 CutC family CDO11_RS09235 PF01301 Glycosyl hydrolases family 35 CDO11_RS09245 PF17678 Glycosyl hydrolase family 92 N-terminal domain CDO11_RS09245 PF07971 Glycosyl hydrolase family 92 CDO11_RS09310 PF03412 Peptidase C39 family CDO11_RS09310 PF00664 ABC transporter transmembrane region CDO11_RS09310 PF00005 ABC transporter CDO11_RS09315 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_RS09315 PF14310 Fibronectin type III-like domain CDO11_RS09315 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_RS09315 PF07691 PA14 domain CDO11_RS09335 PF00704 Glycosyl hydrolases family 18 CDO11_RS09335 PF01476 LysM domain CDO11_RS09350 PF02685 Glucokinase CDO11_RS09355 PF04452 RNA methyltransferase CDO11_RS09360 PF00202 Aminotransferase class-III CDO11_RS09365 PF00293 NUDIX domain CDO11_RS09370 PF00459 Inositol monophosphatase family CDO11_RS09375 PF03819 MazG nucleotide pyrophosphohydrolase domain CDO11_RS09390 PF01145 SPFH domain / Band 7 family CDO11_RS09390 PF16200 C-terminal region of band_7 CDO11_RS09400 PF01571 Aminomethyltransferase folate-binding domain CDO11_RS09400 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO11_RS09405 PF01597 Glycine cleavage H-protein CDO11_RS09440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_RS09440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_RS09440 PF09317 Domain of unknown function (DUF1974) CDO11_RS09450 PF00440 Bacterial regulatory proteins, tetR family CDO11_RS09455 PF00593 TonB dependent receptor CDO11_RS09455 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS09465 PF01430 Hsp33 protein CDO11_RS09470 PF00912 Transglycosylase CDO11_RS09475 PF00535 Glycosyl transferase family 2 CDO11_RS09495 PF03006 Haemolysin-III related CDO11_RS09500 PF16658 Class II release factor RF3, C-terminal domain CDO11_RS09500 PF00009 Elongation factor Tu GTP binding domain CDO11_RS09505 PF01476 LysM domain CDO11_RS09505 PF01551 Peptidase family M23 CDO11_RS09505 PF08525 Opacity-associated protein A N-terminal motif CDO11_RS09510 PF00561 alpha/beta hydrolase fold CDO11_RS09515 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO11_RS09525 PF03315 Serine dehydratase beta chain CDO11_RS09525 PF03313 Serine dehydratase alpha chain CDO11_RS09540 PF04264 YceI-like domain CDO11_RS09550 PF04264 YceI-like domain CDO11_RS09555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS09555 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS09555 PF01627 Hpt domain CDO11_RS09555 PF00072 Response regulator receiver domain CDO11_RS09555 PF17149 Periplasmic sensor domain found in signal transduction proteins CDO11_RS09555 PF00672 HAMP domain CDO11_RS09560 PF01627 Hpt domain CDO11_RS09560 PF00672 HAMP domain CDO11_RS09560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS09560 PF00072 Response regulator receiver domain CDO11_RS09560 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS09560 PF17149 Periplasmic sensor domain found in signal transduction proteins CDO11_RS09565 PF17149 Periplasmic sensor domain found in signal transduction proteins CDO11_RS09565 PF00072 Response regulator receiver domain CDO11_RS09565 PF01627 Hpt domain CDO11_RS09565 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS09565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS09565 PF00672 HAMP domain CDO11_RS09605 PF07745 Glycosyl hydrolase family 53 CDO11_RS09615 PF09856 Predicted transcriptional regulator (DUF2083) CDO11_RS09615 PF01381 Helix-turn-helix CDO11_RS09615 PF06114 IrrE N-terminal-like domain CDO11_RS09620 PF00171 Aldehyde dehydrogenase family CDO11_RS09625 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_RS09625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_RS09625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_RS09635 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO11_RS09635 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO11_RS09635 PF00378 Enoyl-CoA hydratase/isomerase CDO11_RS09640 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO11_RS09640 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO11_RS09645 PF01545 Cation efflux family CDO11_RS09650 PF00378 Enoyl-CoA hydratase/isomerase CDO11_RS09650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO11_RS09650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO11_RS09655 PF04542 Sigma-70 region 2 CDO11_RS09655 PF08281 Sigma-70, region 4 CDO11_RS09665 PF13180 PDZ domain CDO11_RS09670 PF06421 GTP-binding protein LepA C-terminus CDO11_RS09670 PF03144 Elongation factor Tu domain 2 CDO11_RS09670 PF00679 Elongation factor G C-terminus CDO11_RS09670 PF00009 Elongation factor Tu GTP binding domain CDO11_RS09675 PF10502 Signal peptidase, peptidase S26 CDO11_RS09685 PF14622 Ribonuclease-III-like CDO11_RS09685 PF00035 Double-stranded RNA binding motif CDO11_RS09690 PF01926 50S ribosome-binding GTPase CDO11_RS09690 PF07650 KH domain CDO11_RS09695 PF11967 Recombination protein O N terminal CDO11_RS09695 PF02565 Recombination protein O C terminal CDO11_RS09705 PF05958 tRNA (Uracil-5-)-methyltransferase CDO11_RS09710 PF01928 CYTH domain CDO11_RS09715 PF01928 CYTH domain CDO11_RS09725 PF05598 Transposase domain (DUF772) CDO11_RS09730 PF01323 DSBA-like thioredoxin domain CDO11_RS09735 PF01593 Flavin containing amine oxidoreductase CDO11_RS09740 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CDO11_RS09745 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_RS09750 PF00156 Phosphoribosyl transferase domain CDO11_RS09755 PF01048 Phosphorylase superfamily CDO11_RS09760 PF00313 'Cold-shock' DNA-binding domain CDO11_RS09780 PF08494 DEAD/H associated CDO11_RS09780 PF00271 Helicase conserved C-terminal domain CDO11_RS09780 PF00270 DEAD/DEAH box helicase CDO11_RS09785 PF04679 ATP dependent DNA ligase C terminal region CDO11_RS09785 PF01068 ATP dependent DNA ligase domain CDO11_RS09785 PF04675 DNA ligase N terminus CDO11_RS09795 PF04679 ATP dependent DNA ligase C terminal region CDO11_RS09795 PF04675 DNA ligase N terminus CDO11_RS09795 PF01068 ATP dependent DNA ligase domain CDO11_RS09810 PF00072 Response regulator receiver domain CDO11_RS09810 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS09825 PF02803 Thiolase, C-terminal domain CDO11_RS09825 PF00108 Thiolase, N-terminal domain CDO11_RS09830 PF00082 Subtilase family CDO11_RS09830 PF12951 Passenger-associated-transport-repeat CDO11_RS09830 PF03797 Autotransporter beta-domain CDO11_RS09835 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDO11_RS09835 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDO11_RS09850 PF01863 Protein of unknown function DUF45 CDO11_RS09855 PF07043 Protein of unknown function (DUF1328) CDO11_RS09865 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDO11_RS09910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_RS09925 PF08274 PhnA Zinc-Ribbon CDO11_RS09925 PF03831 PhnA domain CDO11_RS09940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO11_RS09945 PF07690 Major Facilitator Superfamily CDO11_RS10000 PF03706 Lysylphosphatidylglycerol synthase TM region CDO11_RS10000 PF09924 Uncharacterised conserved protein (DUF2156) CDO11_RS10010 PF01042 Endoribonuclease L-PSP CDO11_RS10055 PF04542 Sigma-70 region 2 CDO11_RS10055 PF04545 Sigma-70, region 4 CDO11_RS10075 PF04060 Putative Fe-S cluster CDO11_RS10085 PF01588 Putative tRNA binding domain CDO11_RS10085 PF09334 tRNA synthetases class I (M) CDO11_RS10105 PF00324 Amino acid permease CDO11_RS10110 PF02574 Homocysteine S-methyltransferase CDO11_RS10125 PF02592 Putative vitamin uptake transporter CDO11_RS10140 PF05598 Transposase domain (DUF772) CDO11_RS10160 PF00009 Elongation factor Tu GTP binding domain CDO11_RS10205 PF03653 Uncharacterised protein family (UPF0093) CDO11_RS10235 PF00593 TonB dependent receptor CDO11_RS10235 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS10245 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CDO11_RS10250 PF01336 OB-fold nucleic acid binding domain CDO11_RS10250 PF02811 PHP domain CDO11_RS10250 PF14579 Helix-hairpin-helix motif CDO11_RS10250 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDO11_RS10250 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDO11_RS10255 PF01351 Ribonuclease HII CDO11_RS10260 PF02684 Lipid-A-disaccharide synthetase CDO11_RS10265 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_RS10265 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CDO11_RS10270 PF07977 FabA-like domain CDO11_RS10275 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_RS10275 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CDO11_RS10285 PF07244 Surface antigen variable number repeat CDO11_RS10285 PF01103 Surface antigen CDO11_RS10290 PF17820 PDZ domain CDO11_RS10290 PF02163 Peptidase family M50 CDO11_RS10295 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CDO11_RS10295 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CDO11_RS10295 PF13288 DXP reductoisomerase C-terminal domain CDO11_RS10305 PF01255 Putative undecaprenyl diphosphate synthase CDO11_RS10310 PF01765 Ribosome recycling factor CDO11_RS10315 PF00696 Amino acid kinase family CDO11_RS10325 PF00889 Elongation factor TS CDO11_RS10330 PF00318 Ribosomal protein S2 CDO11_RS10365 PF00557 Metallopeptidase family M24 CDO11_RS10370 PF01966 HD domain CDO11_RS10370 PF08335 GlnD PII-uridylyltransferase CDO11_RS10370 PF01909 Nucleotidyltransferase domain CDO11_RS10375 PF14602 Hexapeptide repeat of succinyl-transferase CDO11_RS10375 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_RS10375 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CDO11_RS10385 PF03960 ArsC family CDO11_RS10395 PF07687 Peptidase dimerisation domain CDO11_RS10395 PF01546 Peptidase family M20/M25/M40 CDO11_RS10400 PF13537 Glutamine amidotransferase domain CDO11_RS10400 PF00733 Asparagine synthase CDO11_RS10415 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS10415 PF00593 TonB dependent receptor CDO11_RS10420 PF01804 Penicillin amidase CDO11_RS10425 PF00210 Ferritin-like domain CDO11_RS10435 PF03989 DNA gyrase C-terminal domain, beta-propeller CDO11_RS10435 PF00521 DNA gyrase/topoisomerase IV, subunit A CDO11_RS10450 PF02321 Outer membrane efflux protein CDO11_RS10455 PF00529 HlyD membrane-fusion protein of T1SS CDO11_RS10455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_RS10460 PF07690 Major Facilitator Superfamily CDO11_RS10505 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CDO11_RS10505 PF02780 Transketolase, C-terminal domain CDO11_RS10505 PF02779 Transketolase, pyrimidine binding domain CDO11_RS10515 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDO11_RS10515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_RS10515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_RS10515 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_RS10530 PF01668 SmpB protein CDO11_RS10535 PF03364 Polyketide cyclase / dehydrase and lipid transport CDO11_RS10540 PF03658 RnfH family Ubiquitin CDO11_RS10550 PF04355 SmpA / OmlA family CDO11_RS10555 PF01475 Ferric uptake regulator family CDO11_RS10560 PF02463 RecF/RecN/SMC N terminal domain CDO11_RS10565 PF01628 HrcA protein C terminal domain CDO11_RS10565 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CDO11_RS10570 PF01025 GrpE CDO11_RS10575 PF00012 Hsp70 protein CDO11_RS10580 PF00684 DnaJ central domain CDO11_RS10580 PF01556 DnaJ C terminal domain CDO11_RS10580 PF00226 DnaJ domain CDO11_RS10590 PF08543 Phosphomethylpyrimidine kinase CDO11_RS10595 PF02153 Prephenate dehydrogenase CDO11_RS10595 PF01817 Chorismate mutase type II CDO11_RS10615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS10615 PF03466 LysR substrate binding domain CDO11_RS10630 PF00664 ABC transporter transmembrane region CDO11_RS10630 PF00005 ABC transporter CDO11_RS10635 PF01205 Uncharacterized protein family UPF0029 CDO11_RS10640 PF03641 Possible lysine decarboxylase CDO11_RS10645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO11_RS10645 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_RS10650 PF02817 e3 binding domain CDO11_RS10650 PF00364 Biotin-requiring enzyme CDO11_RS10650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDO11_RS10655 PF00676 Dehydrogenase E1 component CDO11_RS10655 PF16078 2-oxoglutarate dehydrogenase N-terminus CDO11_RS10655 PF02779 Transketolase, pyrimidine binding domain CDO11_RS10655 PF16870 2-oxoglutarate dehydrogenase C-terminal CDO11_RS10665 PF08007 Cupin superfamily protein CDO11_RS10685 PF08328 Adenylosuccinate lyase C-terminal CDO11_RS10685 PF00206 Lyase CDO11_RS10715 PF10415 Fumarase C C-terminus CDO11_RS10715 PF00206 Lyase CDO11_RS10745 PF00005 ABC transporter CDO11_RS10750 PF00392 Bacterial regulatory proteins, gntR family CDO11_RS10760 PF00255 Glutathione peroxidase CDO11_RS10765 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDO11_RS10765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_RS10770 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDO11_RS10770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDO11_RS10770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDO11_RS10775 PF04102 SlyX CDO11_RS10790 PF00356 Bacterial regulatory proteins, lacI family CDO11_RS10795 PF07690 Major Facilitator Superfamily CDO11_RS10800 PF00294 pfkB family carbohydrate kinase CDO11_RS10810 PF00809 Pterin binding enzyme CDO11_RS10810 PF02574 Homocysteine S-methyltransferase CDO11_RS10810 PF02310 B12 binding domain CDO11_RS10810 PF02607 B12 binding domain CDO11_RS10810 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDO11_RS10815 PF00809 Pterin binding enzyme CDO11_RS10815 PF02574 Homocysteine S-methyltransferase CDO11_RS10820 PF01209 ubiE/COQ5 methyltransferase family CDO11_RS10825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_RS10825 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_RS10825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_RS10855 PF08206 Ribonuclease B OB domain CDO11_RS10855 PF08461 Ribonuclease R winged-helix domain CDO11_RS10855 PF17876 Cold shock domain CDO11_RS10855 PF00773 RNB domain CDO11_RS10855 PF00575 S1 RNA binding domain CDO11_RS10875 PF00588 SpoU rRNA Methylase family CDO11_RS10875 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDO11_RS10895 PF05598 Transposase domain (DUF772) CDO11_RS10895 PF01609 Transposase DDE domain CDO11_RS10920 PF00872 Transposase, Mutator family CDO11_RS10930 PF00313 'Cold-shock' DNA-binding domain CDO11_RS10935 PF00561 alpha/beta hydrolase fold CDO11_RS10945 PF01609 Transposase DDE domain CDO11_RS10945 PF05598 Transposase domain (DUF772) CDO11_RS10955 PF05598 Transposase domain (DUF772) CDO11_RS10955 PF01609 Transposase DDE domain CDO11_RS11015 PF05598 Transposase domain (DUF772) CDO11_RS11015 PF01609 Transposase DDE domain CDO11_RS11040 PF03544 Gram-negative bacterial TonB protein C-terminal CDO11_RS11045 PF02403 Seryl-tRNA synthetase N-terminal domain CDO11_RS11045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO11_RS11065 PF01609 Transposase DDE domain CDO11_RS11065 PF05598 Transposase domain (DUF772) CDO11_RS11070 PF02525 Flavodoxin-like fold CDO11_RS11075 PF03466 LysR substrate binding domain CDO11_RS11075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS11135 PF03377 TAL effector repeat CDO11_RS11170 PF03079 ARD/ARD' family CDO11_RS11175 PF00596 Class II Aldolase and Adducin N-terminal domain CDO11_RS11180 PF13520 Amino acid permease CDO11_RS11185 PF13520 Amino acid permease CDO11_RS11195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO11_RS11195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO11_RS11200 PF01565 FAD binding domain CDO11_RS11200 PF02913 FAD linked oxidases, C-terminal domain CDO11_RS11225 PF03918 Cytochrome C biogenesis protein CDO11_RS11230 PF08534 Redoxin CDO11_RS11235 PF01578 Cytochrome C assembly protein CDO11_RS11235 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CDO11_RS11240 PF03100 CcmE CDO11_RS11250 PF01578 Cytochrome C assembly protein CDO11_RS11255 PF03379 CcmB protein CDO11_RS11260 PF00005 ABC transporter CDO11_RS11265 PF00155 Aminotransferase class I and II CDO11_RS11270 PF00795 Carbon-nitrogen hydrolase CDO11_RS11290 PF00849 RNA pseudouridylate synthase CDO11_RS11290 PF01479 S4 domain CDO11_RS11295 PF04079 Segregation and condensation complex subunit ScpB CDO11_RS11300 PF02616 Segregation and condensation protein ScpA CDO11_RS11305 PF03795 YCII-related domain CDO11_RS11315 PF00356 Bacterial regulatory proteins, lacI family CDO11_RS11335 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_RS11340 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_RS11360 PF00795 Carbon-nitrogen hydrolase CDO11_RS11370 PF04371 Porphyromonas-type peptidyl-arginine deiminase CDO11_RS11380 PF00444 Ribosomal protein L36 CDO11_RS11385 PF02224 Cytidylate kinase CDO11_RS11390 PF00575 S1 RNA binding domain CDO11_RS11395 PF00216 Bacterial DNA-binding protein CDO11_RS11405 PF18073 Rubredoxin metal binding domain CDO11_RS11410 PF00953 Glycosyl transferase family 4 CDO11_RS11415 PF02719 Polysaccharide biosynthesis protein CDO11_RS11420 PF00483 Nucleotidyl transferase CDO11_RS11440 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDO11_RS11440 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDO11_RS11445 PF00478 IMP dehydrogenase / GMP reductase domain CDO11_RS11445 PF00571 CBS domain CDO11_RS11450 PF02540 NAD synthase CDO11_RS11450 PF00117 Glutamine amidotransferase class-I CDO11_RS11450 PF00958 GMP synthase C terminal domain CDO11_RS11455 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CDO11_RS11460 PF00361 Proton-conducting membrane transporter CDO11_RS11460 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CDO11_RS11460 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO11_RS11465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS11465 PF03466 LysR substrate binding domain CDO11_RS11490 PF03601 Conserved hypothetical protein 698 CDO11_RS11495 PF03466 LysR substrate binding domain CDO11_RS11495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS11510 PF00072 Response regulator receiver domain CDO11_RS11510 PF00196 Bacterial regulatory proteins, luxR family CDO11_RS11520 PF01566 Natural resistance-associated macrophage protein CDO11_RS11525 PF02742 Iron dependent repressor, metal binding and dimerisation domain CDO11_RS11525 PF01325 Iron dependent repressor, N-terminal DNA binding domain CDO11_RS11530 PF14437 MafB19-like deaminase CDO11_RS11535 PF00929 Exonuclease CDO11_RS11540 PF05552 Conserved TM helix CDO11_RS11540 PF00924 Mechanosensitive ion channel CDO11_RS11545 PF00391 PEP-utilising enzyme, mobile domain CDO11_RS11545 PF02896 PEP-utilising enzyme, TIM barrel domain CDO11_RS11545 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CDO11_RS11550 PF03618 Kinase/pyrophosphorylase CDO11_RS11600 PF01066 CDP-alcohol phosphatidyltransferase CDO11_RS11610 PF00561 alpha/beta hydrolase fold CDO11_RS11625 PF01266 FAD dependent oxidoreductase CDO11_RS11625 PF00355 Rieske [2Fe-2S] domain CDO11_RS11635 PF17674 HHH domain CDO11_RS11635 PF00575 S1 RNA binding domain CDO11_RS11635 PF09371 Tex-like protein N-terminal domain CDO11_RS11635 PF16921 Tex protein YqgF-like domain CDO11_RS11650 PF00072 Response regulator receiver domain CDO11_RS11660 PF04551 GcpE protein CDO11_RS11665 PF01569 PAP2 superfamily CDO11_RS11675 PF07690 Major Facilitator Superfamily CDO11_RS11690 PF01177 Asp/Glu/Hydantoin racemase CDO11_RS11700 PF00892 EamA-like transporter family CDO11_RS11705 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CDO11_RS11705 PF01565 FAD binding domain CDO11_RS11710 PF01180 Dihydroorotate dehydrogenase CDO11_RS11725 PF00171 Aldehyde dehydrogenase family CDO11_RS11740 PF03447 Homoserine dehydrogenase, NAD binding domain CDO11_RS11740 PF00742 Homoserine dehydrogenase CDO11_RS11740 PF13840 ACT domain CDO11_RS11740 PF01842 ACT domain CDO11_RS11740 PF00696 Amino acid kinase family CDO11_RS11745 PF08544 GHMP kinases C terminal CDO11_RS11745 PF00288 GHMP kinases N terminal domain CDO11_RS11760 PF14821 Threonine synthase N terminus CDO11_RS11760 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_RS11775 PF03129 Anticodon binding domain CDO11_RS11775 PF13393 Histidyl-tRNA synthetase CDO11_RS11795 PF01634 ATP phosphoribosyltransferase CDO11_RS11795 PF08029 HisG, C-terminal domain CDO11_RS11800 PF00815 Histidinol dehydrogenase CDO11_RS11805 PF00155 Aminotransferase class I and II CDO11_RS11810 PF00475 Imidazoleglycerol-phosphate dehydratase CDO11_RS11815 PF00117 Glutamine amidotransferase class-I CDO11_RS11820 PF00977 Histidine biosynthesis protein CDO11_RS11825 PF00977 Histidine biosynthesis protein CDO11_RS11830 PF01502 Phosphoribosyl-AMP cyclohydrolase CDO11_RS11830 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CDO11_RS11840 PF03377 TAL effector repeat CDO11_RS11870 PF07516 SecA Wing and Scaffold domain CDO11_RS11870 PF01043 SecA preprotein cross-linking domain CDO11_RS11870 PF07517 SecA DEAD-like domain CDO11_RS11870 PF02810 SEC-C motif CDO11_RS11975 PF02303 Helix-destabilising protein CDO11_RS12020 PF01609 Transposase DDE domain CDO11_RS12020 PF05598 Transposase domain (DUF772) CDO11_RS12075 PF03377 TAL effector repeat CDO11_RS12105 PF13333 Integrase core domain CDO11_RS12105 PF00665 Integrase core domain CDO11_RS12105 PF13276 HTH-like domain CDO11_RS12155 PF00872 Transposase, Mutator family CDO11_RS12165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_RS12185 PF01066 CDP-alcohol phosphatidyltransferase CDO11_RS12190 PF08459 UvrC Helix-hairpin-helix N-terminal CDO11_RS12190 PF02151 UvrB/uvrC motif CDO11_RS12190 PF01541 GIY-YIG catalytic domain CDO11_RS12200 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDO11_RS12205 PF02348 Cytidylyltransferase CDO11_RS12210 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CDO11_RS12215 PF00005 ABC transporter CDO11_RS12215 PF00664 ABC transporter transmembrane region CDO11_RS12225 PF01618 MotA/TolQ/ExbB proton channel family CDO11_RS12230 PF03772 Competence protein CDO11_RS12230 PF00753 Metallo-beta-lactamase superfamily CDO11_RS12250 PF00005 ABC transporter CDO11_RS12255 PF12704 MacB-like periplasmic core domain CDO11_RS12255 PF02687 FtsX-like permease family CDO11_RS12265 PF03937 Flavinator of succinate dehydrogenase CDO11_RS12270 PF13085 2Fe-2S iron-sulfur cluster binding domain CDO11_RS12280 PF00890 FAD binding domain CDO11_RS12280 PF02910 Fumarate reductase flavoprotein C-term CDO11_RS12285 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDO11_RS12290 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDO11_RS12300 PF01571 Aminomethyltransferase folate-binding domain CDO11_RS12310 PF00005 ABC transporter CDO11_RS12310 PF17912 MalK OB fold domain CDO11_RS12315 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CDO11_RS12315 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CDO11_RS12325 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CDO11_RS12330 PF00920 Dehydratase family CDO11_RS12335 PF01081 KDPG and KHG aldolase CDO11_RS12340 PF05598 Transposase domain (DUF772) CDO11_RS12370 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDO11_RS12370 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS12370 PF01627 Hpt domain CDO11_RS12370 PF00072 Response regulator receiver domain CDO11_RS12370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS12370 PF00672 HAMP domain CDO11_RS12395 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS12415 PF02253 Phospholipase A1 CDO11_RS12435 PF05683 Fumarase C-terminus CDO11_RS12435 PF05681 Fumarate hydratase (Fumerase) CDO11_RS12440 PF00005 ABC transporter CDO11_RS12445 PF00970 Oxidoreductase FAD-binding domain CDO11_RS12445 PF00175 Oxidoreductase NAD-binding domain CDO11_RS12450 PF00255 Glutathione peroxidase CDO11_RS12480 PF04542 Sigma-70 region 2 CDO11_RS12480 PF08281 Sigma-70, region 4 CDO11_RS12490 PF12802 MarR family CDO11_RS12525 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_RS12525 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_RS12525 PF14310 Fibronectin type III-like domain CDO11_RS12540 PF00360 Phytochrome region CDO11_RS12540 PF01590 GAF domain CDO11_RS12540 PF00563 EAL domain CDO11_RS12540 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS12550 PF00474 Sodium:solute symporter family CDO11_RS12560 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_RS12560 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_RS12560 PF14310 Fibronectin type III-like domain CDO11_RS12585 PF00342 Phosphoglucose isomerase CDO11_RS12590 PF02261 Aspartate decarboxylase CDO11_RS12595 PF02569 Pantoate-beta-alanine ligase CDO11_RS12600 PF02548 Ketopantoate hydroxymethyltransferase CDO11_RS12605 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDO11_RS12610 PF01743 Poly A polymerase head domain CDO11_RS12610 PF12627 Probable RNA and SrmB- binding site of polymerase A CDO11_RS12610 PF12626 Polymerase A arginine-rich C-terminus CDO11_RS12620 PF02649 Type I GTP cyclohydrolase folE2 CDO11_RS12625 PF01520 N-acetylmuramoyl-L-alanine amidase CDO11_RS12640 PF05598 Transposase domain (DUF772) CDO11_RS12645 PF00082 Subtilase family CDO11_RS12645 PF03797 Autotransporter beta-domain CDO11_RS12655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_RS12660 PF00873 AcrB/AcrD/AcrF family CDO11_RS12665 PF02321 Outer membrane efflux protein CDO11_RS12670 PF00072 Response regulator receiver domain CDO11_RS12670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS12670 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS12670 PF13426 PAS domain CDO11_RS12670 PF08448 PAS fold CDO11_RS12675 PF00196 Bacterial regulatory proteins, luxR family CDO11_RS12675 PF00072 Response regulator receiver domain CDO11_RS12680 PF12951 Passenger-associated-transport-repeat CDO11_RS12715 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDO11_RS12720 PF01817 Chorismate mutase type II CDO11_RS12720 PF00800 Prephenate dehydratase CDO11_RS12720 PF01842 ACT domain CDO11_RS12725 PF00266 Aminotransferase class-V CDO11_RS12730 PF00174 Oxidoreductase molybdopterin binding domain CDO11_RS12740 PF01794 Ferric reductase like transmembrane component CDO11_RS12765 PF07702 UTRA domain CDO11_RS12765 PF00392 Bacterial regulatory proteins, gntR family CDO11_RS12775 PF07969 Amidohydrolase family CDO11_RS12780 PF00221 Aromatic amino acid lyase CDO11_RS12790 PF17391 Urocanase N-terminal domain CDO11_RS12790 PF17392 Urocanase C-terminal domain CDO11_RS12790 PF01175 Urocanase Rossmann-like domain CDO11_RS12810 PF00521 DNA gyrase/topoisomerase IV, subunit A CDO11_RS12810 PF03989 DNA gyrase C-terminal domain, beta-propeller CDO11_RS12815 PF01008 Initiation factor 2 subunit family CDO11_RS12830 PF00152 tRNA synthetases class II (D, K and N) CDO11_RS12835 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CDO11_RS12835 PF01653 NAD-dependent DNA ligase adenylation domain CDO11_RS12835 PF00533 BRCA1 C Terminus (BRCT) domain CDO11_RS12835 PF03120 NAD-dependent DNA ligase OB-fold domain CDO11_RS12835 PF12826 Helix-hairpin-helix motif CDO11_RS12845 PF04354 ZipA, C-terminal FtsZ-binding domain CDO11_RS12850 PF02463 RecF/RecN/SMC N terminal domain CDO11_RS12855 PF01281 Ribosomal protein L9, N-terminal domain CDO11_RS12855 PF03948 Ribosomal protein L9, C-terminal domain CDO11_RS12860 PF01084 Ribosomal protein S18 CDO11_RS12865 PF01250 Ribosomal protein S6 CDO11_RS12870 PF01521 Iron-sulphur cluster biosynthesis CDO11_RS12880 PF00152 tRNA synthetases class II (D, K and N) CDO11_RS12880 PF01336 OB-fold nucleic acid binding domain CDO11_RS12905 PF00484 Carbonic anhydrase CDO11_RS12910 PF06052 3-hydroxyanthranilic acid dioxygenase CDO11_RS12920 PF00266 Aminotransferase class-V CDO11_RS12925 PF01494 FAD binding domain CDO11_RS12930 PF00929 Exonuclease CDO11_RS12930 PF08411 Exonuclease C-terminal CDO11_RS12940 PF00248 Aldo/keto reductase family CDO11_RS12955 PF01513 ATP-NAD kinase CDO11_RS12965 PF10672 S-adenosylmethionine-dependent methyltransferase CDO11_RS12965 PF02926 THUMP domain CDO11_RS12965 PF01170 Putative RNA methylase family UPF0020 CDO11_RS13005 PF00581 Rhodanese-like domain CDO11_RS13010 PF00293 NUDIX domain CDO11_RS13015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_RS13015 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDO11_RS13020 PF00378 Enoyl-CoA hydratase/isomerase CDO11_RS13030 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_RS13030 PF00633 Helix-hairpin-helix motif CDO11_RS13030 PF10576 Iron-sulfur binding domain of endonuclease III CDO11_RS13040 PF00484 Carbonic anhydrase CDO11_RS13045 PF05598 Transposase domain (DUF772) CDO11_RS13045 PF01609 Transposase DDE domain CDO11_RS13080 PF12849 PBP superfamily domain CDO11_RS13085 PF12849 PBP superfamily domain CDO11_RS13090 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_RS13095 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_RS13100 PF00005 ABC transporter CDO11_RS13105 PF01895 PhoU domain CDO11_RS13115 PF00929 Exonuclease CDO11_RS13130 PF00872 Transposase, Mutator family CDO11_RS13160 PF00589 Phage integrase family CDO11_RS13160 PF13495 Phage integrase, N-terminal SAM-like domain CDO11_RS13165 PF07549 SecD/SecF GG Motif CDO11_RS13165 PF02355 Protein export membrane protein CDO11_RS13170 PF07549 SecD/SecF GG Motif CDO11_RS13170 PF13721 SecD export protein N-terminal TM region CDO11_RS13170 PF02355 Protein export membrane protein CDO11_RS13175 PF02699 Preprotein translocase subunit CDO11_RS13180 PF01702 Queuine tRNA-ribosyltransferase CDO11_RS13185 PF02547 Queuosine biosynthesis protein CDO11_RS13270 PF00037 4Fe-4S binding domain CDO11_RS13285 PF01467 Cytidylyltransferase-like CDO11_RS13295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS13295 PF00183 Hsp90 protein CDO11_RS13310 PF00899 ThiF family CDO11_RS13325 PF05598 Transposase domain (DUF772) CDO11_RS13345 PF01609 Transposase DDE domain CDO11_RS13345 PF05598 Transposase domain (DUF772) CDO11_RS13375 PF03453 MoeA N-terminal region (domain I and II) CDO11_RS13375 PF00994 Probable molybdopterin binding domain CDO11_RS13375 PF03454 MoeA C-terminal region (domain IV) CDO11_RS13380 PF01926 50S ribosome-binding GTPase CDO11_RS13380 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CDO11_RS13385 PF01011 PQQ enzyme repeat CDO11_RS13385 PF13360 PQQ-like domain CDO11_RS13395 PF13464 Domain of unknown function (DUF4115) CDO11_RS13405 PF04055 Radical SAM superfamily CDO11_RS13410 PF00334 Nucleoside diphosphate kinase CDO11_RS13420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO11_RS13420 PF00378 Enoyl-CoA hydratase/isomerase CDO11_RS13420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO11_RS13425 PF02803 Thiolase, C-terminal domain CDO11_RS13425 PF00108 Thiolase, N-terminal domain CDO11_RS13430 PF00654 Voltage gated chloride channel CDO11_RS13440 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CDO11_RS13450 PF16193 AAA C-terminal domain CDO11_RS13450 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_RS13450 PF12002 MgsA AAA+ ATPase C terminal CDO11_RS13465 PF03548 Outer membrane lipoprotein carrier protein LolA CDO11_RS13475 PF01580 FtsK/SpoIIIE family CDO11_RS13475 PF09397 Ftsk gamma domain CDO11_RS13475 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CDO11_RS13475 PF17854 FtsK alpha domain CDO11_RS13480 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_RS13495 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CDO11_RS13500 PF01176 Translation initiation factor 1A / IF-1 CDO11_RS13505 PF17871 AAA lid domain CDO11_RS13505 PF07724 AAA domain (Cdc48 subfamily) CDO11_RS13505 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_RS13505 PF02861 Clp amino terminal domain, pathogenicity island component CDO11_RS13505 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_RS13510 PF02617 ATP-dependent Clp protease adaptor protein ClpS CDO11_RS13515 PF00293 NUDIX domain CDO11_RS13525 PF04356 Protein of unknown function (DUF489) CDO11_RS13530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_RS13530 PF12729 Four helix bundle sensory module for signal transduction CDO11_RS13530 PF00672 HAMP domain CDO11_RS13545 PF08448 PAS fold CDO11_RS13545 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS13545 PF08447 PAS fold CDO11_RS13545 PF00563 EAL domain CDO11_RS13550 PF07730 Histidine kinase CDO11_RS13550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS13555 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS13555 PF03707 Bacterial signalling protein N terminal repeat CDO11_RS13555 PF00563 EAL domain CDO11_RS13560 PF13188 PAS domain CDO11_RS13560 PF13426 PAS domain CDO11_RS13560 PF00989 PAS fold CDO11_RS13560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS13560 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS13580 PF01584 CheW-like domain CDO11_RS13580 PF00072 Response regulator receiver domain CDO11_RS13590 PF00460 Flagella basal body rod protein CDO11_RS13590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_RS13595 PF03963 Flagellar hook capping protein - N-terminal region CDO11_RS13600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_RS13600 PF00460 Flagella basal body rod protein CDO11_RS13600 PF07559 Flagellar basal body protein FlaE CDO11_RS13605 PF00460 Flagella basal body rod protein CDO11_RS13605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_RS13615 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_RS13615 PF00460 Flagella basal body rod protein CDO11_RS13620 PF02107 Flagellar L-ring protein CDO11_RS13625 PF02119 Flagellar P-ring protein CDO11_RS13630 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CDO11_RS13630 PF10135 Rod binding protein CDO11_RS13635 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_RS13635 PF07196 Flagellin hook IN motif CDO11_RS13645 PF00700 Bacterial flagellin C-terminal helical region CDO11_RS13645 PF00669 Bacterial flagellin N-terminal helical region CDO11_RS13650 PF02465 Flagellar hook-associated protein 2 N-terminus CDO11_RS13650 PF07195 Flagellar hook-associated protein 2 C-terminus CDO11_RS13650 PF07196 Flagellin hook IN motif CDO11_RS13655 PF02561 Flagellar protein FliS CDO11_RS13670 PF00072 Response regulator receiver domain CDO11_RS13670 PF00196 Bacterial regulatory proteins, luxR family CDO11_RS13675 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDO11_RS13675 PF04552 Sigma-54, DNA binding domain CDO11_RS13675 PF04963 Sigma-54 factor, core binding domain CDO11_RS13680 PF01339 CheB methylesterase CDO11_RS13680 PF00072 Response regulator receiver domain CDO11_RS13685 PF06490 Flagellar regulatory protein FleQ CDO11_RS13685 PF02954 Bacterial regulatory protein, Fis family CDO11_RS13685 PF00158 Sigma-54 interaction domain CDO11_RS13690 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO11_RS13700 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDO11_RS13700 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDO11_RS13735 PF00534 Glycosyl transferases group 1 CDO11_RS13735 PF00535 Glycosyl transferase family 2 CDO11_RS13745 PF02049 Flagellar hook-basal body complex protein FliE CDO11_RS13750 PF08345 Flagellar M-ring protein C-terminal CDO11_RS13750 PF01514 Secretory protein of YscJ/FliF family CDO11_RS13755 PF01706 FliG C-terminal domain CDO11_RS13755 PF14841 FliG middle domain CDO11_RS13755 PF14842 FliG N-terminal domain CDO11_RS13765 PF18269 T3SS EscN ATPase C-terminal domain CDO11_RS13765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_RS13785 PF02154 Flagellar motor switch protein FliM CDO11_RS13785 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CDO11_RS13790 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CDO11_RS13795 PF04347 Flagellar biosynthesis protein, FliO CDO11_RS13800 PF00813 FliP family CDO11_RS13810 PF01313 Bacterial export proteins, family 3 CDO11_RS13815 PF01311 Bacterial export proteins, family 1 CDO11_RS13820 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS13825 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS13830 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS13830 PF03707 Bacterial signalling protein N terminal repeat CDO11_RS13830 PF00563 EAL domain CDO11_RS13835 PF01312 FlhB HrpN YscU SpaS Family CDO11_RS13840 PF00771 FHIPEP family CDO11_RS13845 PF00448 SRP54-type protein, GTPase domain CDO11_RS13850 PF10609 NUBPL iron-transfer P-loop NTPase CDO11_RS13855 PF04542 Sigma-70 region 2 CDO11_RS13855 PF04545 Sigma-70, region 4 CDO11_RS13855 PF04539 Sigma-70 region 3 CDO11_RS13860 PF00072 Response regulator receiver domain CDO11_RS13865 PF04344 Chemotaxis phosphatase, CheZ CDO11_RS13870 PF00072 Response regulator receiver domain CDO11_RS13870 PF01584 CheW-like domain CDO11_RS13870 PF02895 Signal transducing histidine kinase, homodimeric domain CDO11_RS13870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS13870 PF01627 Hpt domain CDO11_RS13910 PF01609 Transposase DDE domain CDO11_RS13910 PF05598 Transposase domain (DUF772) CDO11_RS13925 PF05593 RHS Repeat CDO11_RS13925 PF03527 RHS protein CDO11_RS13935 PF01609 Transposase DDE domain CDO11_RS13935 PF05598 Transposase domain (DUF772) CDO11_RS13945 PF01609 Transposase DDE domain CDO11_RS13945 PF05598 Transposase domain (DUF772) CDO11_RS13980 PF00034 Cytochrome c CDO11_RS14035 PF01609 Transposase DDE domain CDO11_RS14035 PF05598 Transposase domain (DUF772) CDO11_RS14050 PF00664 ABC transporter transmembrane region CDO11_RS14050 PF00005 ABC transporter CDO11_RS14065 PF01609 Transposase DDE domain CDO11_RS14065 PF05598 Transposase domain (DUF772) CDO11_RS14095 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CDO11_RS14095 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CDO11_RS14100 PF00171 Aldehyde dehydrogenase family CDO11_RS14105 PF01472 PUA domain CDO11_RS14105 PF00696 Amino acid kinase family CDO11_RS14120 PF00206 Lyase CDO11_RS14125 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDO11_RS14135 PF00696 Amino acid kinase family CDO11_RS14135 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase CDO11_RS14140 PF07687 Peptidase dimerisation domain CDO11_RS14140 PF01546 Peptidase family M20/M25/M40 CDO11_RS14150 PF00764 Arginosuccinate synthase CDO11_RS14155 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDO11_RS14155 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDO11_RS14165 PF09190 DALR domain CDO11_RS14165 PF01406 tRNA synthetases class I (C) catalytic domain CDO11_RS14170 PF02657 Fe-S metabolism associated domain CDO11_RS14185 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDO11_RS14190 PF01809 Putative membrane protein insertion efficiency factor CDO11_RS14195 PF01979 Amidohydrolase family CDO11_RS14200 PF08460 Bacterial SH3 domain CDO11_RS14200 PF01551 Peptidase family M23 CDO11_RS14235 PF01609 Transposase DDE domain CDO11_RS14235 PF05598 Transposase domain (DUF772) CDO11_RS14250 PF01095 Pectinesterase CDO11_RS14265 PF00295 Glycosyl hydrolases family 28 CDO11_RS14275 PF13419 Haloacid dehalogenase-like hydrolase CDO11_RS14285 PF01979 Amidohydrolase family CDO11_RS14295 PF09285 Elongation factor P, C-terminal CDO11_RS14295 PF08207 Elongation factor P (EF-P) KOW-like domain CDO11_RS14295 PF01132 Elongation factor P (EF-P) OB domain CDO11_RS14300 PF04055 Radical SAM superfamily CDO11_RS14305 PF00563 EAL domain CDO11_RS14305 PF13188 PAS domain CDO11_RS14305 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS14305 PF03707 Bacterial signalling protein N terminal repeat CDO11_RS14315 PF00588 SpoU rRNA Methylase family CDO11_RS14320 PF00459 Inositol monophosphatase family CDO11_RS14325 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDO11_RS14325 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDO11_RS14330 PF00545 ribonuclease CDO11_RS14350 PF16326 ABC transporter C-terminal domain CDO11_RS14350 PF00005 ABC transporter CDO11_RS14350 PF12848 ABC transporter CDO11_RS14355 PF00271 Helicase conserved C-terminal domain CDO11_RS14355 PF00270 DEAD/DEAH box helicase CDO11_RS14355 PF03880 DbpA RNA binding domain CDO11_RS14360 PF00156 Phosphoribosyl transferase domain CDO11_RS14365 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CDO11_RS14375 PF14497 Glutathione S-transferase, C-terminal domain CDO11_RS14375 PF02798 Glutathione S-transferase, N-terminal domain CDO11_RS14380 PF00313 'Cold-shock' DNA-binding domain CDO11_RS14385 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CDO11_RS14390 PF07152 YaeQ protein CDO11_RS14400 PF00563 EAL domain CDO11_RS14400 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS14400 PF00072 Response regulator receiver domain CDO11_RS14405 PF01435 Peptidase family M48 CDO11_RS14410 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDO11_RS14415 PF00106 short chain dehydrogenase CDO11_RS14420 PF07879 PHB/PHA accumulation regulator DNA-binding domain CDO11_RS14420 PF05233 PHB accumulation regulatory domain CDO11_RS14440 PF08676 MutL C terminal dimerisation domain CDO11_RS14440 PF01119 DNA mismatch repair protein, C-terminal domain CDO11_RS14445 PF11741 AMIN domain CDO11_RS14445 PF01520 N-acetylmuramoyl-L-alanine amidase CDO11_RS14450 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CDO11_RS14455 PF01256 Carbohydrate kinase CDO11_RS14455 PF03853 YjeF-related protein N-terminus CDO11_RS14460 PF08331 Domain of unknown function (DUF1730) CDO11_RS14470 PF13742 OB-fold nucleic acid binding domain CDO11_RS14470 PF02601 Exonuclease VII, large subunit CDO11_RS14485 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_RS14500 PF01612 3'-5' exonuclease CDO11_RS14500 PF00570 HRDC domain CDO11_RS14505 PF04679 ATP dependent DNA ligase C terminal region CDO11_RS14505 PF01068 ATP dependent DNA ligase domain CDO11_RS14505 PF13298 DNA polymerase Ligase (LigD) CDO11_RS14555 PF01619 Proline dehydrogenase CDO11_RS14555 PF14850 DNA-binding domain of Proline dehydrogenase CDO11_RS14555 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CDO11_RS14555 PF00171 Aldehyde dehydrogenase family CDO11_RS14570 PF00872 Transposase, Mutator family CDO11_RS14615 PF04386 Stringent starvation protein B CDO11_RS14620 PF02798 Glutathione S-transferase, N-terminal domain CDO11_RS14620 PF00043 Glutathione S-transferase, C-terminal domain CDO11_RS14625 PF02167 Cytochrome C1 family CDO11_RS14630 PF00032 Cytochrome b(C-terminal)/b6/petD CDO11_RS14630 PF00033 Cytochrome b/b6/petB CDO11_RS14635 PF00355 Rieske [2Fe-2S] domain CDO11_RS14635 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CDO11_RS14645 PF01464 Transglycosylase SLT domain CDO11_RS14665 PF01938 TRAM domain CDO11_RS14665 PF00919 Uncharacterized protein family UPF0004 CDO11_RS14665 PF04055 Radical SAM superfamily CDO11_RS14670 PF02562 PhoH-like protein CDO11_RS14680 PF02130 Uncharacterized protein family UPF0054 CDO11_RS14690 PF03471 Transporter associated domain CDO11_RS14690 PF00571 CBS domain CDO11_RS14705 PF00171 Aldehyde dehydrogenase family CDO11_RS14715 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_RS14720 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_RS14725 PF00005 ABC transporter CDO11_RS14725 PF08402 TOBE domain CDO11_RS14730 PF02321 Outer membrane efflux protein CDO11_RS14735 PF07690 Major Facilitator Superfamily CDO11_RS14740 PF13533 Biotin-lipoyl like CDO11_RS14755 PF00120 Glutamine synthetase, catalytic domain CDO11_RS14775 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS14775 PF00072 Response regulator receiver domain CDO11_RS14780 PF07690 Major Facilitator Superfamily CDO11_RS14780 PF00083 Sugar (and other) transporter CDO11_RS14790 PF00384 Molybdopterin oxidoreductase CDO11_RS14795 PF02634 FdhD/NarQ family CDO11_RS14800 PF07690 Major Facilitator Superfamily CDO11_RS14810 PF00202 Aminotransferase class-III CDO11_RS14815 PF00005 ABC transporter CDO11_RS14825 PF04286 Protein of unknown function (DUF445) CDO11_RS14830 PF00072 Response regulator receiver domain CDO11_RS14830 PF01627 Hpt domain CDO11_RS14830 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDO11_RS14830 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS14830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS14830 PF00672 HAMP domain CDO11_RS14835 PF00072 Response regulator receiver domain CDO11_RS14840 PF05598 Transposase domain (DUF772) CDO11_RS14840 PF01609 Transposase DDE domain CDO11_RS14860 PF00529 HlyD membrane-fusion protein of T1SS CDO11_RS14860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_RS14865 PF00873 AcrB/AcrD/AcrF family CDO11_RS14885 PF00356 Bacterial regulatory proteins, lacI family CDO11_RS14890 PF02896 PEP-utilising enzyme, TIM barrel domain CDO11_RS14890 PF00391 PEP-utilising enzyme, mobile domain CDO11_RS14890 PF05524 PEP-utilising enzyme, N-terminal CDO11_RS14890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDO11_RS14890 PF00381 PTS HPr component phosphorylation site CDO11_RS14895 PF00294 pfkB family carbohydrate kinase CDO11_RS14900 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDO11_RS14915 PF05598 Transposase domain (DUF772) CDO11_RS14915 PF01609 Transposase DDE domain CDO11_RS14985 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS15000 PF03377 TAL effector repeat CDO11_RS15005 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS15065 PF05598 Transposase domain (DUF772) CDO11_RS15065 PF01609 Transposase DDE domain CDO11_RS15095 PF00593 TonB dependent receptor CDO11_RS15095 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS15105 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDO11_RS15105 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDO11_RS15115 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS15115 PF00593 TonB dependent receptor CDO11_RS15125 PF01618 MotA/TolQ/ExbB proton channel family CDO11_RS15130 PF13677 Membrane MotB of proton-channel complex MotA/MotB CDO11_RS15130 PF00691 OmpA family CDO11_RS15135 PF13614 AAA domain CDO11_RS15140 PF01584 CheW-like domain CDO11_RS15150 PF00072 Response regulator receiver domain CDO11_RS15155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS15155 PF02895 Signal transducing histidine kinase, homodimeric domain CDO11_RS15155 PF09078 CheY binding CDO11_RS15155 PF01584 CheW-like domain CDO11_RS15155 PF01627 Hpt domain CDO11_RS15175 PF00672 HAMP domain CDO11_RS15175 PF02203 Tar ligand binding domain homologue CDO11_RS15175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_RS15190 PF02203 Tar ligand binding domain homologue CDO11_RS15190 PF00672 HAMP domain CDO11_RS15190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_RS15200 PF00672 HAMP domain CDO11_RS15200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_RS15200 PF02203 Tar ligand binding domain homologue CDO11_RS15210 PF02203 Tar ligand binding domain homologue CDO11_RS15210 PF00672 HAMP domain CDO11_RS15210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_RS15215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_RS15215 PF02203 Tar ligand binding domain homologue CDO11_RS15215 PF00672 HAMP domain CDO11_RS15220 PF02203 Tar ligand binding domain homologue CDO11_RS15220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_RS15220 PF00672 HAMP domain CDO11_RS15225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_RS15225 PF00672 HAMP domain CDO11_RS15225 PF02203 Tar ligand binding domain homologue CDO11_RS15240 PF07238 PilZ domain CDO11_RS15240 PF07317 Flagellar regulator YcgR CDO11_RS15245 PF01584 CheW-like domain CDO11_RS15270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_RS15270 PF00672 HAMP domain CDO11_RS15270 PF02203 Tar ligand binding domain homologue CDO11_RS15275 PF03705 CheR methyltransferase, all-alpha domain CDO11_RS15275 PF01739 CheR methyltransferase, SAM binding domain CDO11_RS15280 PF03975 CheD chemotactic sensory transduction CDO11_RS15285 PF01339 CheB methylesterase CDO11_RS15285 PF00072 Response regulator receiver domain CDO11_RS15290 PF00563 EAL domain CDO11_RS15290 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS15290 PF03707 Bacterial signalling protein N terminal repeat CDO11_RS15305 PF00561 alpha/beta hydrolase fold CDO11_RS15310 PF11791 Aconitate B N-terminal domain CDO11_RS15310 PF06434 Aconitate hydratase 2 N-terminus CDO11_RS15310 PF00330 Aconitase family (aconitate hydratase) CDO11_RS15325 PF00330 Aconitase family (aconitate hydratase) CDO11_RS15325 PF00694 Aconitase C-terminal domain CDO11_RS15335 PF00501 AMP-binding enzyme CDO11_RS15335 PF13193 AMP-binding enzyme C-terminal domain CDO11_RS15340 PF00378 Enoyl-CoA hydratase/isomerase CDO11_RS15345 PF01627 Hpt domain CDO11_RS15345 PF00072 Response regulator receiver domain CDO11_RS15345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS15345 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS15355 PF00072 Response regulator receiver domain CDO11_RS15360 PF01336 OB-fold nucleic acid binding domain CDO11_RS15360 PF00152 tRNA synthetases class II (D, K and N) CDO11_RS15385 PF01610 Transposase CDO11_RS15385 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CDO11_RS15385 PF13542 Helix-turn-helix domain of transposase family ISL3 CDO11_RS15415 PF02272 DHHA1 domain CDO11_RS15415 PF01368 DHH family CDO11_RS15415 PF17768 RecJ OB domain CDO11_RS15425 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO11_RS15425 PF03449 Transcription elongation factor, N-terminal CDO11_RS15430 PF02142 MGS-like domain CDO11_RS15430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO11_RS15430 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDO11_RS15440 PF00117 Glutamine amidotransferase class-I CDO11_RS15440 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CDO11_RS15445 PF05173 Dihydrodipicolinate reductase, C-terminus CDO11_RS15445 PF01113 Dihydrodipicolinate reductase, N-terminus CDO11_RS15455 PF03475 3-alpha domain CDO11_RS15455 PF03473 MOSC domain CDO11_RS15460 PF00155 Aminotransferase class I and II CDO11_RS15480 PF07664 Ferrous iron transport protein B C terminus CDO11_RS15480 PF02421 Ferrous iron transport protein B CDO11_RS15480 PF07670 Nucleoside recognition CDO11_RS15490 PF00378 Enoyl-CoA hydratase/isomerase CDO11_RS15500 PF00682 HMGL-like CDO11_RS15505 PF00106 short chain dehydrogenase CDO11_RS15510 PF08207 Elongation factor P (EF-P) KOW-like domain CDO11_RS15510 PF09285 Elongation factor P, C-terminal CDO11_RS15510 PF01132 Elongation factor P (EF-P) OB domain CDO11_RS15530 PF00083 Sugar (and other) transporter CDO11_RS15540 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO11_RS15540 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO11_RS15550 PF17137 Domain of unknown function (DUF5110) CDO11_RS15550 PF01055 Glycosyl hydrolases family 31 CDO11_RS15550 PF16338 Domain of unknown function (DUF4968) CDO11_RS15560 PF03466 LysR substrate binding domain CDO11_RS15560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS15565 PF01081 KDPG and KHG aldolase CDO11_RS15570 PF13378 Enolase C-terminal domain-like CDO11_RS15570 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_RS15575 PF08450 SMP-30/Gluconolactonase/LRE-like region CDO11_RS15580 PF05035 2-keto-3-deoxy-galactonokinase CDO11_RS15585 PF00037 4Fe-4S binding domain CDO11_RS15585 PF11953 Domain of unknown function (DUF3470) CDO11_RS15595 PF00701 Dihydrodipicolinate synthetase family CDO11_RS15610 PF00578 AhpC/TSA family CDO11_RS15615 PF02562 PhoH-like protein CDO11_RS15615 PF13638 PIN domain CDO11_RS15625 PF08543 Phosphomethylpyrimidine kinase CDO11_RS15655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS15655 PF03466 LysR substrate binding domain CDO11_RS15660 PF02678 Pirin CDO11_RS15660 PF17954 Quercetinase C-terminal cupin domain CDO11_RS15685 PF03796 DnaB-like helicase C terminal domain CDO11_RS15685 PF00772 DnaB-like helicase N terminal domain CDO11_RS15710 PF02599 Global regulator protein family CDO11_RS15715 PF02272 DHHA1 domain CDO11_RS15715 PF01411 tRNA synthetases class II (A) CDO11_RS15715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDO11_RS15720 PF02631 RecX family CDO11_RS15730 PF00154 recA bacterial DNA recombination protein CDO11_RS15735 PF01726 LexA DNA binding domain CDO11_RS15735 PF00717 Peptidase S24-like CDO11_RS15740 PF03109 ABC1 family CDO11_RS15745 PF02464 Competence-damaged protein CDO11_RS15750 PF01926 50S ribosome-binding GTPase CDO11_RS15750 PF16360 GTP-binding GTPase Middle Region CDO11_RS15750 PF13167 GTP-binding GTPase N-terminal CDO11_RS15755 PF17209 Hfq protein CDO11_RS15765 PF00809 Pterin binding enzyme CDO11_RS15770 PF17862 AAA+ lid domain CDO11_RS15770 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_RS15770 PF06480 FtsH Extracellular CDO11_RS15770 PF01434 Peptidase family M41 CDO11_RS15775 PF01728 FtsJ-like methyltransferase CDO11_RS15780 PF01985 CRS1 / YhbY (CRM) domain CDO11_RS15790 PF01476 LysM domain CDO11_RS15790 PF01551 Peptidase family M23 CDO11_RS15795 PF09335 SNARE associated Golgi protein CDO11_RS15805 PF01975 Survival protein SurE CDO11_RS15810 PF01713 Smr domain CDO11_RS15815 PF01142 tRNA pseudouridine synthase D (TruD) CDO11_RS15820 PF02542 YgbB family CDO11_RS15830 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDO11_RS15835 PF04977 Septum formation initiator CDO11_RS15840 PF03952 Enolase, N-terminal domain CDO11_RS15840 PF00113 Enolase, C-terminal TIM barrel domain CDO11_RS15850 PF00793 DAHP synthetase I family CDO11_RS15855 PF00117 Glutamine amidotransferase class-I CDO11_RS15855 PF06418 CTP synthase N-terminus CDO11_RS15865 PF01751 Toprim domain CDO11_RS15865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS15865 PF00986 DNA gyrase B subunit, carboxyl terminus CDO11_RS15865 PF00204 DNA gyrase B CDO11_RS15880 PF02698 DUF218 domain CDO11_RS15885 PF01384 Phosphate transporter family CDO11_RS15900 PF03471 Transporter associated domain CDO11_RS15900 PF00571 CBS domain CDO11_RS15900 PF01595 Cyclin M transmembrane N-terminal domain CDO11_RS15915 PF00296 Luciferase-like monooxygenase CDO11_RS15935 PF07690 Major Facilitator Superfamily CDO11_RS15945 PF00005 ABC transporter CDO11_RS15945 PF00664 ABC transporter transmembrane region CDO11_RS15950 PF00005 ABC transporter CDO11_RS15970 PF00534 Glycosyl transferases group 1 CDO11_RS15970 PF13579 Glycosyl transferase 4-like domain CDO11_RS15990 PF08241 Methyltransferase domain CDO11_RS16005 PF00535 Glycosyl transferase family 2 CDO11_RS16010 PF01943 Polysaccharide biosynthesis protein CDO11_RS16015 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO11_RS16035 PF05523 WxcM-like, C-terminal CDO11_RS16050 PF00034 Cytochrome c CDO11_RS16060 PF04542 Sigma-70 region 2 CDO11_RS16060 PF08281 Sigma-70, region 4 CDO11_RS16070 PF00082 Subtilase family CDO11_RS16075 PF01578 Cytochrome C assembly protein CDO11_RS16080 PF04995 Heme exporter protein D (CcmD) CDO11_RS16085 PF03100 CcmE CDO11_RS16090 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CDO11_RS16090 PF01578 Cytochrome C assembly protein CDO11_RS16095 PF08534 Redoxin CDO11_RS16100 PF03918 Cytochrome C biogenesis protein CDO11_RS16130 PF03377 TAL effector repeat CDO11_RS16170 PF00873 AcrB/AcrD/AcrF family CDO11_RS16175 PF00529 HlyD membrane-fusion protein of T1SS CDO11_RS16175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_RS16225 PF00072 Response regulator receiver domain CDO11_RS16225 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS16230 PF03150 Di-haem cytochrome c peroxidase CDO11_RS16230 PF00034 Cytochrome c CDO11_RS16235 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS16235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS16240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS16240 PF03466 LysR substrate binding domain CDO11_RS16245 PF06812 ImpA, N-terminal, type VI secretion system CDO11_RS16265 PF00069 Protein kinase domain CDO11_RS16280 PF14331 ImcF-related N-terminal domain CDO11_RS16280 PF06744 Type VI secretion protein IcmF C-terminal CDO11_RS16280 PF06761 Intracellular multiplication and human macrophage-killing CDO11_RS16290 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CDO11_RS16305 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS16305 PF06715 Gp5 C-terminal repeat (3 copies) CDO11_RS16325 PF17871 AAA lid domain CDO11_RS16325 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_RS16325 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_RS16325 PF07724 AAA domain (Cdc48 subfamily) CDO11_RS16335 PF05947 Type VI secretion system, TssF CDO11_RS16340 PF04965 Gene 25-like lysozyme CDO11_RS16345 PF07024 ImpE protein CDO11_RS16350 PF05638 Type VI secretion system effector, Hcp CDO11_RS16355 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CDO11_RS16360 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 CDO11_RS16385 PF05598 Transposase domain (DUF772) CDO11_RS16385 PF01609 Transposase DDE domain CDO11_RS16405 PF01609 Transposase DDE domain CDO11_RS16405 PF05598 Transposase domain (DUF772) CDO11_RS16450 PF01106 NifU-like domain CDO11_RS16455 PF01329 Pterin 4 alpha carbinolamine dehydratase CDO11_RS16465 PF02535 ZIP Zinc transporter CDO11_RS16470 PF02535 ZIP Zinc transporter CDO11_RS16480 PF00849 RNA pseudouridylate synthase CDO11_RS16480 PF01479 S4 domain CDO11_RS16485 PF10150 Ribonuclease E/G family CDO11_RS16485 PF00575 S1 RNA binding domain CDO11_RS16485 PF12111 Polyribonucleotide phosphorylase C terminal CDO11_RS16500 PF00072 Response regulator receiver domain CDO11_RS16500 PF00196 Bacterial regulatory proteins, luxR family CDO11_RS16505 PF00581 Rhodanese-like domain CDO11_RS16505 PF17773 UPF0176 acylphosphatase like domain CDO11_RS16510 PF01609 Transposase DDE domain CDO11_RS16510 PF05598 Transposase domain (DUF772) CDO11_RS16520 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_RS16530 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDO11_RS16530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDO11_RS16530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDO11_RS16540 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CDO11_RS16540 PF01648 4'-phosphopantetheinyl transferase superfamily CDO11_RS16570 PF01609 Transposase DDE domain CDO11_RS16570 PF05598 Transposase domain (DUF772) CDO11_RS16575 PF05598 Transposase domain (DUF772) CDO11_RS16575 PF01609 Transposase DDE domain CDO11_RS16605 PF14824 Sirohaem biosynthesis protein central CDO11_RS16605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO11_RS16605 PF10414 Sirohaem synthase dimerisation region CDO11_RS16630 PF12804 MobA-like NTP transferase domain CDO11_RS16635 PF00994 Probable molybdopterin binding domain CDO11_RS16635 PF03454 MoeA C-terminal region (domain IV) CDO11_RS16635 PF03453 MoeA N-terminal region (domain I and II) CDO11_RS16710 PF00593 TonB dependent receptor CDO11_RS16710 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS16730 PF04616 Glycosyl hydrolases family 43 CDO11_RS16735 PF07532 Bacterial Ig-like domain (group 4) CDO11_RS16740 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS16740 PF00593 TonB dependent receptor CDO11_RS16750 PF00082 Subtilase family CDO11_RS16750 PF09286 Pro-kumamolisin, activation domain CDO11_RS16790 PF13520 Amino acid permease CDO11_RS16805 PF01321 Creatinase/Prolidase N-terminal domain CDO11_RS16805 PF00557 Metallopeptidase family M24 CDO11_RS16810 PF00171 Aldehyde dehydrogenase family CDO11_RS16815 PF00701 Dihydrodipicolinate synthetase family CDO11_RS16820 PF04324 BFD-like [2Fe-2S] binding domain CDO11_RS16820 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_RS16830 PF01266 FAD dependent oxidoreductase CDO11_RS16835 PF05544 Proline racemase CDO11_RS16845 PF00448 SRP54-type protein, GTPase domain CDO11_RS16845 PF02881 SRP54-type protein, helical bundle domain CDO11_RS16860 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_RS16860 PF00633 Helix-hairpin-helix motif CDO11_RS16860 PF14815 NUDIX domain CDO11_RS16865 PF04362 Bacterial Fe(2+) trafficking CDO11_RS16870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS16870 PF13426 PAS domain CDO11_RS16870 PF00072 Response regulator receiver domain CDO11_RS16960 PF08212 Lipocalin-like domain CDO11_RS16990 PF03808 Glycosyl transferase WecB/TagA/CpsF family CDO11_RS17005 PF14667 Polysaccharide biosynthesis C-terminal domain CDO11_RS17015 PF13439 Glycosyltransferase Family 4 CDO11_RS17015 PF00534 Glycosyl transferases group 1 CDO11_RS17035 PF02397 Bacterial sugar transferase CDO11_RS17055 PF13411 MerR HTH family regulatory protein CDO11_RS17060 PF00216 Bacterial DNA-binding protein CDO11_RS17065 PF01588 Putative tRNA binding domain CDO11_RS17065 PF03147 Ferredoxin-fold anticodon binding domain CDO11_RS17065 PF03484 tRNA synthetase B5 domain CDO11_RS17065 PF03483 B3/4 domain CDO11_RS17065 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CDO11_RS17070 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CDO11_RS17070 PF01409 tRNA synthetases class II core domain (F) CDO11_RS17075 PF00453 Ribosomal protein L20 CDO11_RS17080 PF01632 Ribosomal protein L35 CDO11_RS17085 PF00707 Translation initiation factor IF-3, C-terminal domain CDO11_RS17085 PF05198 Translation initiation factor IF-3, N-terminal domain CDO11_RS17090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDO11_RS17090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO11_RS17090 PF02824 TGS domain CDO11_RS17090 PF03129 Anticodon binding domain CDO11_RS17120 PF00271 Helicase conserved C-terminal domain CDO11_RS17120 PF04851 Type III restriction enzyme, res subunit CDO11_RS17120 PF02151 UvrB/uvrC motif CDO11_RS17120 PF12344 Ultra-violet resistance protein B CDO11_RS17120 PF17757 UvrB interaction domain CDO11_RS17125 PF07963 Prokaryotic N-terminal methylation motif CDO11_RS17125 PF00114 Pilin (bacterial filament) CDO11_RS17135 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor CDO11_RS17135 PF07963 Prokaryotic N-terminal methylation motif CDO11_RS17140 PF05567 Neisseria PilC beta-propeller domain CDO11_RS17160 PF07963 Prokaryotic N-terminal methylation motif CDO11_RS17160 PF12019 Type II transport protein GspH CDO11_RS17165 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CDO11_RS17165 PF11892 Domain of unknown function (DUF3412) CDO11_RS17165 PF03641 Possible lysine decarboxylase CDO11_RS17170 PF00593 TonB dependent receptor CDO11_RS17180 PF01914 MarC family integral membrane protein CDO11_RS17190 PF00462 Glutaredoxin CDO11_RS17195 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDO11_RS17195 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDO11_RS17200 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CDO11_RS17200 PF02222 ATP-grasp domain CDO11_RS17205 PF00731 AIR carboxylase CDO11_RS17215 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CDO11_RS17215 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CDO11_RS17225 PF00575 S1 RNA binding domain CDO11_RS17225 PF01138 3' exoribonuclease family, domain 1 CDO11_RS17225 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CDO11_RS17225 PF00013 KH domain CDO11_RS17225 PF03725 3' exoribonuclease family, domain 2 CDO11_RS17230 PF00312 Ribosomal protein S15 CDO11_RS17235 PF16198 tRNA pseudouridylate synthase B C-terminal domain CDO11_RS17235 PF09157 Pseudouridine synthase II TruB, C-terminal CDO11_RS17235 PF01509 TruB family pseudouridylate synthase (N terminal domain) CDO11_RS17240 PF02033 Ribosome-binding factor A CDO11_RS17245 PF00009 Elongation factor Tu GTP binding domain CDO11_RS17245 PF04760 Translation initiation factor IF-2, N-terminal region CDO11_RS17245 PF11987 Translation-initiation factor 2 CDO11_RS17245 PF08364 Bacterial translation initiation factor IF-2 associated region CDO11_RS17250 PF08529 NusA N-terminal domain CDO11_RS17250 PF13184 NusA-like KH domain CDO11_RS17250 PF00575 S1 RNA binding domain CDO11_RS17255 PF17384 RimP C-terminal SH3 domain CDO11_RS17255 PF02576 RimP N-terminal domain CDO11_RS17265 PF00361 Proton-conducting membrane transporter CDO11_RS17270 PF00361 Proton-conducting membrane transporter CDO11_RS17270 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CDO11_RS17275 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO11_RS17275 PF00361 Proton-conducting membrane transporter CDO11_RS17280 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDO11_RS17285 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CDO11_RS17290 PF12838 4Fe-4S dicluster domain CDO11_RS17295 PF00146 NADH dehydrogenase CDO11_RS17300 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CDO11_RS17300 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDO11_RS17300 PF00384 Molybdopterin oxidoreductase CDO11_RS17305 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDO11_RS17305 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDO11_RS17305 PF10531 SLBB domain CDO11_RS17315 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDO11_RS17320 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CDO11_RS17325 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDO11_RS17330 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CDO11_RS17345 PF00121 Triosephosphate isomerase CDO11_RS17380 PF00563 EAL domain CDO11_RS17380 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS17380 PF03707 Bacterial signalling protein N terminal repeat CDO11_RS17395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDO11_RS17395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDO11_RS17395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDO11_RS17395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDO11_RS17400 PF17848 Acetyl-coA carboxylase zinc finger domain CDO11_RS17400 PF01039 Carboxyl transferase domain CDO11_RS17405 PF00290 Tryptophan synthase alpha chain CDO11_RS17415 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_RS17420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS17420 PF03466 LysR substrate binding domain CDO11_RS17425 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CDO11_RS17430 PF01416 tRNA pseudouridine synthase CDO11_RS17450 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDO11_RS17450 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDO11_RS17455 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO11_RS17455 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO11_RS17460 PF01264 Chorismate synthase CDO11_RS17465 PF05175 Methyltransferase small domain CDO11_RS17470 PF02630 SCO1/SenC CDO11_RS17475 PF02666 Phosphatidylserine decarboxylase CDO11_RS17520 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO11_RS17520 PF03449 Transcription elongation factor, N-terminal CDO11_RS17525 PF00919 Uncharacterized protein family UPF0004 CDO11_RS17525 PF04055 Radical SAM superfamily CDO11_RS17525 PF18693 TRAM domain CDO11_RS17530 PF01738 Dienelactone hydrolase family CDO11_RS17550 PF00692 dUTPase CDO11_RS17555 PF10609 NUBPL iron-transfer P-loop NTPase CDO11_RS17600 PF01266 FAD dependent oxidoreductase CDO11_RS17605 PF04235 Protein of unknown function (DUF418) CDO11_RS17610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_RS17615 PF00877 NlpC/P60 family CDO11_RS17620 PF00877 NlpC/P60 family CDO11_RS17635 PF00375 Sodium:dicarboxylate symporter family CDO11_RS17640 PF00245 Alkaline phosphatase CDO11_RS17645 PF09179 TilS substrate binding domain CDO11_RS17645 PF11734 TilS substrate C-terminal domain CDO11_RS17645 PF01171 PP-loop family CDO11_RS17650 PF02609 Exonuclease VII small subunit CDO11_RS17655 PF00348 Polyprenyl synthetase CDO11_RS17680 PF01523 Putative modulator of DNA gyrase CDO11_RS17685 PF04751 Protein of unknown function (DUF615) CDO11_RS17690 PF01523 Putative modulator of DNA gyrase CDO11_RS17700 PF13116 Protein of unknown function CDO11_RS17700 PF13502 AsmA-like C-terminal region CDO11_RS17705 PF10150 Ribonuclease E/G family CDO11_RS17705 PF00575 S1 RNA binding domain CDO11_RS17710 PF02545 Maf-like protein CDO11_RS17715 PF04402 Protein of unknown function (DUF541) CDO11_RS17740 PF02590 Predicted SPOUT methyltransferase CDO11_RS17765 PF01467 Cytidylyltransferase-like CDO11_RS17785 PF00133 tRNA synthetases class I (I, L, M and V) CDO11_RS17785 PF13603 Leucyl-tRNA synthetase, Domain 2 CDO11_RS17785 PF08264 Anticodon-binding domain of tRNA CDO11_RS17795 PF00085 Thioredoxin CDO11_RS17880 PF00128 Alpha amylase, catalytic domain CDO11_RS17880 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_RS17885 PF05598 Transposase domain (DUF772) CDO11_RS17885 PF01609 Transposase DDE domain CDO11_RS17890 PF05598 Transposase domain (DUF772) CDO11_RS17890 PF01609 Transposase DDE domain CDO11_RS17970 PF00657 GDSL-like Lipase/Acylhydrolase CDO11_RS17970 PF03797 Autotransporter beta-domain CDO11_RS17985 PF05690 Thiazole biosynthesis protein ThiG CDO11_RS17990 PF02390 Putative methyltransferase CDO11_RS17995 PF02080 TrkA-C domain CDO11_RS17995 PF03600 Citrate transporter CDO11_RS18020 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDO11_RS18025 PF01741 Large-conductance mechanosensitive channel, MscL CDO11_RS18050 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDO11_RS18050 PF00588 SpoU rRNA Methylase family CDO11_RS18080 PF11838 ERAP1-like C-terminal domain CDO11_RS18080 PF01433 Peptidase family M1 domain CDO11_RS18085 PF00873 AcrB/AcrD/AcrF family CDO11_RS18090 PF00529 HlyD membrane-fusion protein of T1SS CDO11_RS18090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_RS18100 PF00009 Elongation factor Tu GTP binding domain CDO11_RS18105 PF01507 Phosphoadenosine phosphosulfate reductase family CDO11_RS18110 PF00667 FAD binding domain CDO11_RS18110 PF00258 Flavodoxin CDO11_RS18110 PF00175 Oxidoreductase NAD-binding domain CDO11_RS18115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDO11_RS18115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDO11_RS18120 PF01507 Phosphoadenosine phosphosulfate reductase family CDO11_RS18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS18140 PF01627 Hpt domain CDO11_RS18140 PF00072 Response regulator receiver domain CDO11_RS18140 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS18140 PF00672 HAMP domain CDO11_RS18170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS18170 PF03466 LysR substrate binding domain CDO11_RS18175 PF10414 Sirohaem synthase dimerisation region CDO11_RS18175 PF14824 Sirohaem biosynthesis protein central CDO11_RS18175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO11_RS18180 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_RS18190 PF01661 Macro domain CDO11_RS18195 PF00274 Fructose-bisphosphate aldolase class-I CDO11_RS18200 PF00224 Pyruvate kinase, barrel domain CDO11_RS18200 PF02887 Pyruvate kinase, alpha/beta domain CDO11_RS18205 PF13419 Haloacid dehalogenase-like hydrolase CDO11_RS18210 PF00162 Phosphoglycerate kinase CDO11_RS18245 PF18011 C-terminal domain found in long catalases CDO11_RS18245 PF06628 Catalase-related immune-responsive CDO11_RS18245 PF00199 Catalase CDO11_RS18270 PF05598 Transposase domain (DUF772) CDO11_RS18270 PF01609 Transposase DDE domain CDO11_RS18290 PF12833 Helix-turn-helix domain CDO11_RS18290 PF02311 AraC-like ligand binding domain CDO11_RS18320 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CDO11_RS18320 PF00326 Prolyl oligopeptidase family CDO11_RS18320 PF07676 WD40-like Beta Propeller Repeat CDO11_RS18345 PF05598 Transposase domain (DUF772) CDO11_RS18345 PF01609 Transposase DDE domain CDO11_RS18350 PF03169 OPT oligopeptide transporter protein CDO11_RS18370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDO11_RS18370 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDO11_RS18370 PF14579 Helix-hairpin-helix motif CDO11_RS18370 PF02811 PHP domain CDO11_RS18390 PF01726 LexA DNA binding domain CDO11_RS18390 PF00717 Peptidase S24-like CDO11_RS18420 PF13456 Reverse transcriptase-like CDO11_RS18420 PF00300 Histidine phosphatase superfamily (branch 1) CDO11_RS18455 PF18766 SWI2/SNF2 ATPase CDO11_RS18455 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CDO11_RS18455 PF11867 Domain of unknown function (DUF3387) CDO11_RS18470 PF01909 Nucleotidyltransferase domain CDO11_RS18475 PF08780 Nucleotidyltransferase substrate binding protein like CDO11_RS18480 PF02384 N-6 DNA Methylase CDO11_RS18500 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CDO11_RS18500 PF04851 Type III restriction enzyme, res subunit CDO11_RS18500 PF00271 Helicase conserved C-terminal domain CDO11_RS18500 PF08463 EcoEI R protein C-terminal CDO11_RS18510 PF02384 N-6 DNA Methylase CDO11_RS18520 PF01420 Type I restriction modification DNA specificity domain CDO11_RS18545 PF06715 Gp5 C-terminal repeat (3 copies) CDO11_RS18545 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS18590 PF07724 AAA domain (Cdc48 subfamily) CDO11_RS18590 PF17871 AAA lid domain CDO11_RS18590 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_RS18590 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_RS18600 PF05947 Type VI secretion system, TssF CDO11_RS18615 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CDO11_RS18620 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 CDO11_RS18645 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS18645 PF13296 Putative type VI secretion system Rhs element Vgr CDO11_RS18645 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CDO11_RS18650 PF13296 Putative type VI secretion system Rhs element Vgr CDO11_RS18650 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS18650 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CDO11_RS18655 PF00182 Chitinase class I CDO11_RS18660 PF13296 Putative type VI secretion system Rhs element Vgr CDO11_RS18660 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CDO11_RS18660 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS18670 PF13296 Putative type VI secretion system Rhs element Vgr CDO11_RS18670 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CDO11_RS18670 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS18760 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS18765 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_RS18815 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS18820 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_RS18830 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_RS18840 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS18840 PF06715 Gp5 C-terminal repeat (3 copies) CDO11_RS18855 PF04972 BON domain CDO11_RS18855 PF00691 OmpA family CDO11_RS18895 PF02222 ATP-grasp domain CDO11_RS18920 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_RS18935 PF00196 Bacterial regulatory proteins, luxR family CDO11_RS18935 PF00072 Response regulator receiver domain CDO11_RS18940 PF07730 Histidine kinase CDO11_RS18955 PF03775 Septum formation inhibitor MinC, C-terminal domain CDO11_RS18955 PF05209 Septum formation inhibitor MinC, N-terminal domain CDO11_RS18960 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDO11_RS18965 PF03776 Septum formation topological specificity factor MinE CDO11_RS18975 PF08521 Two-component sensor kinase N-terminal CDO11_RS18975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS18975 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS18980 PF00072 Response regulator receiver domain CDO11_RS18980 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS18985 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CDO11_RS18995 PF00884 Sulfatase CDO11_RS18995 PF08019 Phosphoethanolamine transferase EptA/EptB CDO11_RS19015 PF00664 ABC transporter transmembrane region CDO11_RS19015 PF00005 ABC transporter CDO11_RS19015 PF03412 Peptidase C39 family CDO11_RS19035 PF02347 Glycine cleavage system P-protein CDO11_RS19090 PF01196 Ribosomal protein L17 CDO11_RS19095 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CDO11_RS19095 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CDO11_RS19095 PF01000 RNA polymerase Rpb3/RpoA insert domain CDO11_RS19100 PF01479 S4 domain CDO11_RS19100 PF00163 Ribosomal protein S4/S9 N-terminal domain CDO11_RS19105 PF00411 Ribosomal protein S11 CDO11_RS19110 PF00416 Ribosomal protein S13/S18 CDO11_RS19115 PF00344 SecY translocase CDO11_RS19120 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CDO11_RS19125 PF00327 Ribosomal protein L30p/L7e CDO11_RS19130 PF00333 Ribosomal protein S5, N-terminal domain CDO11_RS19130 PF03719 Ribosomal protein S5, C-terminal domain CDO11_RS19135 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CDO11_RS19140 PF00347 Ribosomal protein L6 CDO11_RS19145 PF00410 Ribosomal protein S8 CDO11_RS19150 PF00253 Ribosomal protein S14p/S29e CDO11_RS19155 PF00673 ribosomal L5P family C-terminus CDO11_RS19155 PF00281 Ribosomal protein L5 CDO11_RS19160 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CDO11_RS19160 PF00467 KOW motif CDO11_RS19165 PF00238 Ribosomal protein L14p/L23e CDO11_RS19170 PF00366 Ribosomal protein S17 CDO11_RS19175 PF00831 Ribosomal L29 protein CDO11_RS19180 PF00252 Ribosomal protein L16p/L10e CDO11_RS19185 PF00189 Ribosomal protein S3, C-terminal domain CDO11_RS19185 PF07650 KH domain CDO11_RS19190 PF00237 Ribosomal protein L22p/L17e CDO11_RS19195 PF00203 Ribosomal protein S19 CDO11_RS19200 PF00181 Ribosomal Proteins L2, RNA binding domain CDO11_RS19200 PF03947 Ribosomal Proteins L2, C-terminal domain CDO11_RS19205 PF00276 Ribosomal protein L23 CDO11_RS19210 PF00573 Ribosomal protein L4/L1 family CDO11_RS19215 PF00297 Ribosomal protein L3 CDO11_RS19220 PF00338 Ribosomal protein S10p/S20e CDO11_RS19230 PF03143 Elongation factor Tu C-terminal domain CDO11_RS19230 PF00009 Elongation factor Tu GTP binding domain CDO11_RS19230 PF03144 Elongation factor Tu domain 2 CDO11_RS19235 PF00679 Elongation factor G C-terminus CDO11_RS19235 PF03144 Elongation factor Tu domain 2 CDO11_RS19235 PF00009 Elongation factor Tu GTP binding domain CDO11_RS19235 PF03764 Elongation factor G, domain IV CDO11_RS19235 PF14492 Elongation Factor G, domain II CDO11_RS19240 PF00177 Ribosomal protein S7p/S5e CDO11_RS19245 PF00164 Ribosomal protein S12/S23 CDO11_RS19250 PF04998 RNA polymerase Rpb1, domain 5 CDO11_RS19250 PF04997 RNA polymerase Rpb1, domain 1 CDO11_RS19250 PF05000 RNA polymerase Rpb1, domain 4 CDO11_RS19250 PF04983 RNA polymerase Rpb1, domain 3 CDO11_RS19250 PF00623 RNA polymerase Rpb1, domain 2 CDO11_RS19255 PF04561 RNA polymerase Rpb2, domain 2 CDO11_RS19255 PF00562 RNA polymerase Rpb2, domain 6 CDO11_RS19255 PF10385 RNA polymerase beta subunit external 1 domain CDO11_RS19255 PF04565 RNA polymerase Rpb2, domain 3 CDO11_RS19255 PF04563 RNA polymerase beta subunit CDO11_RS19255 PF04560 RNA polymerase Rpb2, domain 7 CDO11_RS19260 PF00542 Ribosomal protein L7/L12 C-terminal domain CDO11_RS19260 PF16320 Ribosomal protein L7/L12 dimerisation domain CDO11_RS19265 PF00466 Ribosomal protein L10 CDO11_RS19270 PF00687 Ribosomal protein L1p/L10e family CDO11_RS19275 PF00298 Ribosomal protein L11, RNA binding domain CDO11_RS19275 PF03946 Ribosomal protein L11, N-terminal domain CDO11_RS19285 PF02357 Transcription termination factor nusG CDO11_RS19285 PF00467 KOW motif CDO11_RS19290 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CDO11_RS19300 PF03143 Elongation factor Tu C-terminal domain CDO11_RS19300 PF03144 Elongation factor Tu domain 2 CDO11_RS19300 PF00009 Elongation factor Tu GTP binding domain CDO11_RS19320 PF06071 Protein of unknown function (DUF933) CDO11_RS19320 PF01926 50S ribosome-binding GTPase CDO11_RS19325 PF01195 Peptidyl-tRNA hydrolase CDO11_RS19330 PF14693 Ribosomal protein TL5, C-terminal domain CDO11_RS19330 PF01386 Ribosomal L25p family CDO11_RS19335 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDO11_RS19335 PF14572 Phosphoribosyl synthetase-associated domain CDO11_RS19345 PF00288 GHMP kinases N terminal domain CDO11_RS19345 PF08544 GHMP kinases C terminal CDO11_RS19350 PF03550 Outer membrane lipoprotein LolB CDO11_RS19360 PF01488 Shikimate / quinate 5-dehydrogenase CDO11_RS19360 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CDO11_RS19360 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CDO11_RS19365 PF00472 RF-1 domain CDO11_RS19365 PF03462 PCRF domain CDO11_RS19375 PF00994 Probable molybdopterin binding domain CDO11_RS19380 PF03976 Polyphosphate kinase 2 (PPK2) CDO11_RS19390 PF00708 Acylphosphatase CDO11_RS19395 PF08534 Redoxin CDO11_RS19400 PF03631 Virulence factor BrkB CDO11_RS19405 PF03358 NADPH-dependent FMN reductase CDO11_RS19420 PF17189 Glycosyl hydrolase family 30 beta sandwich domain CDO11_RS19420 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain CDO11_RS19430 PF04073 Aminoacyl-tRNA editing domain CDO11_RS19440 PF01063 Amino-transferase class IV CDO11_RS19470 PF02233 NAD(P) transhydrogenase beta subunit CDO11_RS19475 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CDO11_RS19495 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDO11_RS19495 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDO11_RS19495 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CDO11_RS19510 PF00476 DNA polymerase family A CDO11_RS19510 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDO11_RS19510 PF01367 5'-3' exonuclease, C-terminal SAM fold CDO11_RS19510 PF01612 3'-5' exonuclease CDO11_RS19515 PF00293 NUDIX domain CDO11_RS19525 PF00561 alpha/beta hydrolase fold CDO11_RS19560 PF17827 PrmC N-terminal domain CDO11_RS19560 PF05175 Methyltransferase small domain CDO11_RS19565 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDO11_RS19565 PF00578 AhpC/TSA family CDO11_RS19570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_RS19570 PF13192 Thioredoxin domain CDO11_RS19575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS19575 PF03466 LysR substrate binding domain CDO11_RS19585 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO11_RS19585 PF03449 Transcription elongation factor, N-terminal CDO11_RS19590 PF00923 Transaldolase/Fructose-6-phosphate aldolase CDO11_RS19625 PF01625 Peptide methionine sulfoxide reductase CDO11_RS19660 PF00462 Glutaredoxin CDO11_RS19665 PF13181 Tetratricopeptide repeat CDO11_RS19665 PF01435 Peptidase family M48 CDO11_RS19670 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS19670 PF00072 Response regulator receiver domain CDO11_RS19675 PF11808 Phosphate regulon sensor protein PhoR CDO11_RS19675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS19675 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS19675 PF00989 PAS fold CDO11_RS19680 PF17941 Polyphosphate kinase C-terminal domain 1 CDO11_RS19680 PF13090 Polyphosphate kinase C-terminal domain 2 CDO11_RS19680 PF02503 Polyphosphate kinase middle domain CDO11_RS19680 PF13089 Polyphosphate kinase N-terminal domain CDO11_RS19685 PF02541 Ppx/GppA phosphatase family CDO11_RS19690 PF00534 Glycosyl transferases group 1 CDO11_RS19690 PF13439 Glycosyltransferase Family 4 CDO11_RS19695 PF01569 PAP2 superfamily CDO11_RS19700 PF00149 Calcineurin-like phosphoesterase CDO11_RS19720 PF04305 Protein of unknown function (DUF455) CDO11_RS19725 PF00156 Phosphoribosyl transferase domain CDO11_RS19740 PF08245 Mur ligase middle domain CDO11_RS19740 PF02875 Mur ligase family, glutamate ligase domain CDO11_RS19750 PF00300 Histidine phosphatase superfamily (branch 1) CDO11_RS19755 PF10459 Peptidase S46 CDO11_RS19775 PF00107 Zinc-binding dehydrogenase CDO11_RS19775 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_RS19785 PF00005 ABC transporter CDO11_RS19785 PF17850 CysA C-terminal regulatory domain CDO11_RS19785 PF12857 TOBE-like domain CDO11_RS19790 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_RS19795 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_RS19805 PF00155 Aminotransferase class I and II CDO11_RS19815 PF00849 RNA pseudouridylate synthase CDO11_RS19825 PF00691 OmpA family CDO11_RS19825 PF05736 OprF membrane domain CDO11_RS19835 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_RS19835 PF00107 Zinc-binding dehydrogenase CDO11_RS19840 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_RS19840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO11_RS19885 PF00672 HAMP domain CDO11_RS19885 PF17149 Periplasmic sensor domain found in signal transduction proteins CDO11_RS19885 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS19885 PF01627 Hpt domain CDO11_RS19885 PF00072 Response regulator receiver domain CDO11_RS19885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS19890 PF00072 Response regulator receiver domain CDO11_RS19890 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS19910 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CDO11_RS19910 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDO11_RS19970 PF01728 FtsJ-like methyltransferase CDO11_RS19970 PF18125 RlmM ferredoxin-like domain CDO11_RS19975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO11_RS19975 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO11_RS19980 PF08450 SMP-30/Gluconolactonase/LRE-like region CDO11_RS20000 PF00378 Enoyl-CoA hydratase/isomerase CDO11_RS20005 PF00171 Aldehyde dehydrogenase family CDO11_RS20010 PF13193 AMP-binding enzyme C-terminal domain CDO11_RS20010 PF00501 AMP-binding enzyme CDO11_RS20015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS20015 PF03466 LysR substrate binding domain CDO11_RS20025 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDO11_RS20055 PF01494 FAD binding domain CDO11_RS20060 PF01494 FAD binding domain CDO11_RS20070 PF01923 Cobalamin adenosyltransferase CDO11_RS20075 PF00850 Histone deacetylase domain CDO11_RS20080 PF04453 LPS transport system D CDO11_RS20080 PF03968 OstA-like protein CDO11_RS20085 PF09312 SurA N-terminal domain CDO11_RS20085 PF00639 PPIC-type PPIASE domain CDO11_RS20090 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CDO11_RS20100 PF00398 Ribosomal RNA adenine dimethylase CDO11_RS20105 PF04379 ApaG domain CDO11_RS20110 PF00149 Calcineurin-like phosphoesterase CDO11_RS20115 PF00186 Dihydrofolate reductase CDO11_RS20125 PF00303 Thymidylate synthase CDO11_RS20130 PF01790 Prolipoprotein diacylglyceryl transferase CDO11_RS20150 PF01219 Prokaryotic diacylglycerol kinase CDO11_RS20165 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS20165 PF08521 Two-component sensor kinase N-terminal CDO11_RS20165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS20170 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS20170 PF00072 Response regulator receiver domain CDO11_RS20175 PF13472 GDSL-like Lipase/Acylhydrolase family CDO11_RS20180 PF00005 ABC transporter CDO11_RS20190 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CDO11_RS20200 PF00005 ABC transporter CDO11_RS20240 PF00248 Aldo/keto reductase family CDO11_RS20250 PF01773 Na+ dependent nucleoside transporter N-terminus CDO11_RS20250 PF07662 Na+ dependent nucleoside transporter C-terminus CDO11_RS20250 PF07670 Nucleoside recognition CDO11_RS20255 PF00294 pfkB family carbohydrate kinase CDO11_RS20290 PF02772 S-adenosylmethionine synthetase, central domain CDO11_RS20290 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDO11_RS20290 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDO11_RS20300 PF00328 Histidine phosphatase superfamily (branch 2) CDO11_RS20335 PF00311 Phosphoenolpyruvate carboxylase CDO11_RS20345 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CDO11_RS20345 PF05221 S-adenosyl-L-homocysteine hydrolase CDO11_RS20350 PF13649 Methyltransferase domain CDO11_RS20385 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO11_RS20405 PF00107 Zinc-binding dehydrogenase CDO11_RS20405 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO11_RS20405 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_RS20405 PF16197 Ketoacyl-synthetase C-terminal extension CDO11_RS20405 PF00550 Phosphopantetheine attachment site CDO11_RS20405 PF08659 KR domain CDO11_RS20405 PF14765 Polyketide synthase dehydratase CDO11_RS20405 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO11_RS20405 PF00698 Acyl transferase domain CDO11_RS20420 PF02219 Methylenetetrahydrofolate reductase CDO11_RS20435 PF00293 NUDIX domain CDO11_RS20445 PF02810 SEC-C motif CDO11_RS20445 PF07517 SecA DEAD-like domain CDO11_RS20445 PF07516 SecA Wing and Scaffold domain CDO11_RS20445 PF01043 SecA preprotein cross-linking domain CDO11_RS20450 PF01476 LysM domain CDO11_RS20450 PF01551 Peptidase family M23 CDO11_RS20460 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CDO11_RS20465 PF12327 FtsZ family, C-terminal domain CDO11_RS20465 PF00091 Tubulin/FtsZ family, GTPase domain CDO11_RS20470 PF02491 SHS2 domain inserted in FTSA CDO11_RS20475 PF08478 POTRA domain, FtsQ-type CDO11_RS20475 PF03799 Cell division protein FtsQ CDO11_RS20480 PF07478 D-ala D-ala ligase C-terminus CDO11_RS20480 PF01820 D-ala D-ala ligase N-terminus CDO11_RS20485 PF02875 Mur ligase family, glutamate ligase domain CDO11_RS20485 PF08245 Mur ligase middle domain CDO11_RS20485 PF01225 Mur ligase family, catalytic domain CDO11_RS20490 PF04101 Glycosyltransferase family 28 C-terminal domain CDO11_RS20490 PF03033 Glycosyltransferase family 28 N-terminal domain CDO11_RS20495 PF01098 Cell cycle protein CDO11_RS20500 PF00953 Glycosyl transferase family 4 CDO11_RS20505 PF01225 Mur ligase family, catalytic domain CDO11_RS20505 PF02875 Mur ligase family, glutamate ligase domain CDO11_RS20505 PF08245 Mur ligase middle domain CDO11_RS20510 PF01225 Mur ligase family, catalytic domain CDO11_RS20510 PF02875 Mur ligase family, glutamate ligase domain CDO11_RS20510 PF08245 Mur ligase middle domain CDO11_RS20515 PF00905 Penicillin binding protein transpeptidase domain CDO11_RS20515 PF03717 Penicillin-binding Protein dimerisation domain CDO11_RS20520 PF04999 Cell division protein FtsL CDO11_RS20525 PF01795 MraW methylase family CDO11_RS20530 PF02381 MraZ protein, putative antitoxin-like CDO11_RS20550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO11_RS20560 PF02021 Uncharacterised protein family UPF0102 CDO11_RS20565 PF04307 LexA-binding, inner membrane-associated putative hydrolase CDO11_RS20570 PF02913 FAD linked oxidases, C-terminal domain CDO11_RS20570 PF01565 FAD binding domain CDO11_RS20575 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS20575 PF00072 Response regulator receiver domain CDO11_RS20580 PF02702 Osmosensitive K+ channel His kinase sensor domain CDO11_RS20580 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS20580 PF13493 Domain of unknown function (DUF4118) CDO11_RS20580 PF13492 GAF domain CDO11_RS20580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS20585 PF02669 K+-transporting ATPase, c chain CDO11_RS20595 PF03814 Potassium-transporting ATPase A subunit CDO11_RS20620 PF02769 AIR synthase related protein, C-terminal domain CDO11_RS20620 PF00586 AIR synthase related protein, N-terminal domain CDO11_RS20625 PF01029 NusB family CDO11_RS20630 PF00885 6,7-dimethyl-8-ribityllumazine synthase CDO11_RS20635 PF00925 GTP cyclohydrolase II CDO11_RS20635 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDO11_RS20640 PF00677 Lumazine binding domain CDO11_RS20650 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDO11_RS20650 PF01872 RibD C-terminal domain CDO11_RS20660 PF03477 ATP cone domain CDO11_RS20670 PF00464 Serine hydroxymethyltransferase CDO11_RS20690 PF00005 ABC transporter CDO11_RS20690 PF12848 ABC transporter CDO11_RS20710 PF00756 Putative esterase CDO11_RS20720 PF00107 Zinc-binding dehydrogenase CDO11_RS20720 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_RS20725 PF02583 Metal-sensitive transcriptional repressor CDO11_RS20735 PF00072 Response regulator receiver domain CDO11_RS20735 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS20740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS20740 PF16527 Two-component sensor protein CpxA, periplasmic domain CDO11_RS20740 PF00672 HAMP domain CDO11_RS20740 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS20780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS20780 PF00672 HAMP domain CDO11_RS20780 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS20785 PF04107 Glutamate-cysteine ligase family 2(GCS2) CDO11_RS20800 PF01926 50S ribosome-binding GTPase CDO11_RS20805 PF00034 Cytochrome c CDO11_RS20835 PF01609 Transposase DDE domain CDO11_RS20835 PF05598 Transposase domain (DUF772) CDO11_RS20840 PF13291 ACT domain CDO11_RS20840 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_RS20855 PF01609 Transposase DDE domain CDO11_RS20855 PF05598 Transposase domain (DUF772) CDO11_RS20865 PF01527 Transposase CDO11_RS20895 PF01966 HD domain CDO11_RS20895 PF12627 Probable RNA and SrmB- binding site of polymerase A CDO11_RS20895 PF01743 Poly A polymerase head domain CDO11_RS20910 PF01609 Transposase DDE domain CDO11_RS20910 PF05598 Transposase domain (DUF772) CDO11_RS20960 PF01522 Polysaccharide deacetylase CDO11_RS20960 PF14883 Hypothetical glycosyl hydrolase family 13 CDO11_RS20965 PF00535 Glycosyl transferase family 2 CDO11_RS20975 PF01979 Amidohydrolase family CDO11_RS20980 PF01380 SIS domain CDO11_RS20985 PF00356 Bacterial regulatory proteins, lacI family CDO11_RS20990 PF07690 Major Facilitator Superfamily CDO11_RS20995 PF07702 UTRA domain CDO11_RS20995 PF00392 Bacterial regulatory proteins, gntR family CDO11_RS21010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CDO11_RS21010 PF02837 Glycosyl hydrolases family 2, sugar binding domain CDO11_RS21010 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CDO11_RS21010 PF00703 Glycosyl hydrolases family 2 CDO11_RS21010 PF16355 Domain of unknown function (DUF4982) CDO11_RS21065 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDO11_RS21070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS21070 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS21075 PF00072 Response regulator receiver domain CDO11_RS21080 PF00360 Phytochrome region CDO11_RS21080 PF08446 PAS fold CDO11_RS21080 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS21080 PF01590 GAF domain CDO11_RS21080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS21085 PF04972 BON domain CDO11_RS21090 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO11_RS21090 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO11_RS21095 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CDO11_RS21095 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO11_RS21130 PF00293 NUDIX domain CDO11_RS21130 PF01467 Cytidylyltransferase-like CDO11_RS21140 PF17804 Tail specific protease N-terminal domain CDO11_RS21140 PF03572 Peptidase family S41 CDO11_RS21140 PF00595 PDZ domain CDO11_RS21140 PF11818 C-terminal domain of tail specific protease (DUF3340) CDO11_RS21150 PF07669 Eco57I restriction-modification methylase CDO11_RS21150 PF12950 TaqI-like C-terminal specificity domain CDO11_RS21155 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CDO11_RS21155 PF04055 Radical SAM superfamily CDO11_RS21160 PF03099 Biotin/lipoate A/B protein ligase family CDO11_RS21165 PF04359 Protein of unknown function (DUF493) CDO11_RS21180 PF00768 D-alanyl-D-alanine carboxypeptidase CDO11_RS21180 PF07943 Penicillin-binding protein 5, C-terminal domain CDO11_RS21190 PF03330 Lytic transglycolase CDO11_RS21190 PF05036 Sporulation related domain CDO11_RS21195 PF13406 Transglycosylase SLT domain CDO11_RS21210 PF01476 LysM domain CDO11_RS21210 PF01471 Putative peptidoglycan binding domain CDO11_RS21210 PF01510 N-acetylmuramoyl-L-alanine amidase CDO11_RS21240 PF04717 Type VI secretion system, phage-baseplate injector CDO11_RS21255 PF01098 Cell cycle protein CDO11_RS21260 PF03717 Penicillin-binding Protein dimerisation domain CDO11_RS21260 PF00905 Penicillin binding protein transpeptidase domain CDO11_RS21270 PF04085 rod shape-determining protein MreC CDO11_RS21280 PF00294 pfkB family carbohydrate kinase CDO11_RS21285 PF05598 Transposase domain (DUF772) CDO11_RS21285 PF01609 Transposase DDE domain CDO11_RS21310 PF13673 Acetyltransferase (GNAT) domain CDO11_RS21320 PF13533 Biotin-lipoyl like CDO11_RS21330 PF01209 ubiE/COQ5 methyltransferase family CDO11_RS21335 PF08448 PAS fold CDO11_RS21335 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS21340 PF11838 ERAP1-like C-terminal domain CDO11_RS21340 PF01433 Peptidase family M1 domain CDO11_RS21355 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_RS21355 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_RS21355 PF07724 AAA domain (Cdc48 subfamily) CDO11_RS21360 PF00227 Proteasome subunit CDO11_RS21370 PF00589 Phage integrase family CDO11_RS21370 PF02899 Phage integrase, N-terminal SAM-like domain CDO11_RS21380 PF01678 Diaminopimelate epimerase CDO11_RS21395 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CDO11_RS21395 PF00326 Prolyl oligopeptidase family CDO11_RS21400 PF00155 Aminotransferase class I and II CDO11_RS21415 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CDO11_RS21415 PF00326 Prolyl oligopeptidase family CDO11_RS21440 PF03900 Porphobilinogen deaminase, C-terminal domain CDO11_RS21440 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CDO11_RS21445 PF04397 LytTr DNA-binding domain CDO11_RS21445 PF00072 Response regulator receiver domain CDO11_RS21450 PF07694 5TMR of 5TMR-LYT CDO11_RS21450 PF06580 Histidine kinase CDO11_RS21460 PF13632 Glycosyl transferase family group 2 CDO11_RS21495 PF00916 Sulfate permease family CDO11_RS21495 PF01740 STAS domain CDO11_RS21500 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_RS21500 PF00553 Cellulose binding domain CDO11_RS21515 PF00563 EAL domain CDO11_RS21515 PF00990 Diguanylate cyclase, GGDEF domain CDO11_RS21515 PF03707 Bacterial signalling protein N terminal repeat CDO11_RS21555 PF01204 Trehalase CDO11_RS21575 PF01544 CorA-like Mg2+ transporter protein CDO11_RS21585 PF00324 Amino acid permease CDO11_RS21595 PF00041 Fibronectin type III domain CDO11_RS21595 PF01341 Glycosyl hydrolases family 6 CDO11_RS21595 PF00553 Cellulose binding domain CDO11_RS21600 PF03330 Lytic transglycolase CDO11_RS21605 PF00892 EamA-like transporter family CDO11_RS21625 PF07759 Protein of unknown function (DUF1615) CDO11_RS21665 PF00106 short chain dehydrogenase CDO11_RS21685 PF00425 chorismate binding enzyme CDO11_RS21685 PF04715 Anthranilate synthase component I, N terminal region CDO11_RS21690 PF00781 Diacylglycerol kinase catalytic domain CDO11_RS21695 PF00583 Acetyltransferase (GNAT) family CDO11_RS21700 PF00834 Ribulose-phosphate 3 epimerase family CDO11_RS21705 PF00226 DnaJ domain CDO11_RS21705 PF05099 Tellurite resistance protein TerB CDO11_RS21710 PF01259 SAICAR synthetase CDO11_RS21740 PF13244 Domain of unknown function (DUF4040) CDO11_RS21740 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CDO11_RS21740 PF00361 Proton-conducting membrane transporter CDO11_RS21740 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO11_RS21745 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDO11_RS21750 PF00361 Proton-conducting membrane transporter CDO11_RS21760 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CDO11_RS21765 PF03334 Na+/H+ antiporter subunit CDO11_RS21780 PF05598 Transposase domain (DUF772) CDO11_RS21780 PF01609 Transposase DDE domain CDO11_RS21790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_RS21795 PF01047 MarR family CDO11_RS21805 PF00854 POT family CDO11_RS21810 PF03301 Tryptophan 2,3-dioxygenase CDO11_RS21820 PF00676 Dehydrogenase E1 component CDO11_RS21855 PF02803 Thiolase, C-terminal domain CDO11_RS21855 PF00108 Thiolase, N-terminal domain CDO11_RS21910 PF01609 Transposase DDE domain CDO11_RS21910 PF05598 Transposase domain (DUF772) CDO11_RS21940 PF01427 D-ala-D-ala dipeptidase CDO11_RS21945 PF01510 N-acetylmuramoyl-L-alanine amidase CDO11_RS21955 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_RS21955 PF13378 Enolase C-terminal domain-like CDO11_RS21995 PF13520 Amino acid permease CDO11_RS22030 PF05360 yiaA/B two helix domain CDO11_RS22035 PF05598 Transposase domain (DUF772) CDO11_RS22035 PF01609 Transposase DDE domain CDO11_RS22040 PF07995 Glucose / Sorbosone dehydrogenase CDO11_RS22075 PF14310 Fibronectin type III-like domain CDO11_RS22075 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_RS22075 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_RS22080 PF02152 Dihydroneopterin aldolase CDO11_RS22085 PF00814 Glycoprotease family CDO11_RS22090 PF01165 Ribosomal protein S21 CDO11_RS22095 PF09424 Yqey-like protein CDO11_RS22110 PF03631 Virulence factor BrkB CDO11_RS22115 PF01807 CHC2 zinc finger CDO11_RS22115 PF08275 DNA primase catalytic core, N-terminal domain CDO11_RS22115 PF08278 DNA primase DnaG DnaB-binding CDO11_RS22115 PF10410 DnaB-helicase binding domain of primase CDO11_RS22135 PF13593 SBF-like CPA transporter family (DUF4137) CDO11_RS22150 PF01040 UbiA prenyltransferase family CDO11_RS22175 PF00510 Cytochrome c oxidase subunit III CDO11_RS22180 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CDO11_RS22190 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO11_RS22195 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDO11_RS22195 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CDO11_RS22205 PF01619 Proline dehydrogenase CDO11_RS22205 PF14850 DNA-binding domain of Proline dehydrogenase CDO11_RS22205 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CDO11_RS22205 PF00171 Aldehyde dehydrogenase family CDO11_RS22220 PF00210 Ferritin-like domain CDO11_RS22230 PF00293 NUDIX domain CDO11_RS22245 PF00380 Ribosomal protein S9/S16 CDO11_RS22250 PF00572 Ribosomal protein L13 CDO11_RS22255 PF03232 Ubiquinone biosynthesis protein COQ7 CDO11_RS22260 PF00893 Small Multidrug Resistance protein CDO11_RS22265 PF02675 S-adenosylmethionine decarboxylase CDO11_RS22270 PF00325 Bacterial regulatory proteins, crp family CDO11_RS22270 PF00027 Cyclic nucleotide-binding domain CDO11_RS22280 PF00218 Indole-3-glycerol phosphate synthase CDO11_RS22285 PF00591 Glycosyl transferase family, a/b domain CDO11_RS22285 PF02885 Glycosyl transferase family, helical bundle domain CDO11_RS22300 PF00117 Glutamine amidotransferase class-I CDO11_RS22325 PF03971 Monomeric isocitrate dehydrogenase CDO11_RS22335 PF05598 Transposase domain (DUF772) CDO11_RS22365 PF01609 Transposase DDE domain CDO11_RS22365 PF05598 Transposase domain (DUF772) CDO11_RS22380 PF00872 Transposase, Mutator family CDO11_RS22395 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CDO11_RS22395 PF14489 QueF-like protein CDO11_RS22405 PF01546 Peptidase family M20/M25/M40 CDO11_RS22405 PF07687 Peptidase dimerisation domain CDO11_RS22410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_RS22415 PF00873 AcrB/AcrD/AcrF family CDO11_RS22420 PF00873 AcrB/AcrD/AcrF family CDO11_RS22430 PF07063 Domain of unknown function (DUF1338) CDO11_RS22470 PF00581 Rhodanese-like domain CDO11_RS22475 PF02556 Preprotein translocase subunit SecB CDO11_RS22480 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CDO11_RS22480 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CDO11_RS22490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO11_RS22490 PF00205 Thiamine pyrophosphate enzyme, central domain CDO11_RS22490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO11_RS22495 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS22495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS22500 PF02954 Bacterial regulatory protein, Fis family CDO11_RS22500 PF00072 Response regulator receiver domain CDO11_RS22500 PF00158 Sigma-54 interaction domain CDO11_RS22515 PF07690 Major Facilitator Superfamily CDO11_RS22520 PF00588 SpoU rRNA Methylase family CDO11_RS22535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDO11_RS22535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDO11_RS22540 PF02661 Fic/DOC family CDO11_RS22540 PF13784 Fic/DOC family N-terminal CDO11_RS22545 PF01555 DNA methylase CDO11_RS22555 PF00561 alpha/beta hydrolase fold CDO11_RS22560 PF03692 Putative zinc- or iron-chelating domain CDO11_RS22565 PF00501 AMP-binding enzyme CDO11_RS22570 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CDO11_RS22580 PF05598 Transposase domain (DUF772) CDO11_RS22595 PF11871 Domain of unknown function (DUF3391) CDO11_RS22595 PF01966 HD domain CDO11_RS22600 PF07690 Major Facilitator Superfamily CDO11_RS22625 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_RS22630 PF03692 Putative zinc- or iron-chelating domain CDO11_RS22635 PF00920 Dehydratase family CDO11_RS22640 PF00589 Phage integrase family CDO11_RS22640 PF13495 Phage integrase, N-terminal SAM-like domain CDO11_RS22675 PF01218 Coproporphyrinogen III oxidase CDO11_RS22690 PF00476 DNA polymerase family A CDO11_RS22690 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDO11_RS22690 PF01367 5'-3' exonuclease, C-terminal SAM fold CDO11_RS22690 PF01612 3'-5' exonuclease CDO11_RS22715 PF17831 Pyruvate dehydrogenase E1 component middle domain CDO11_RS22715 PF00456 Transketolase, thiamine diphosphate binding domain CDO11_RS22730 PF01609 Transposase DDE domain CDO11_RS22730 PF05598 Transposase domain (DUF772) CDO11_RS22755 PF13276 HTH-like domain CDO11_RS22755 PF00665 Integrase core domain CDO11_RS22755 PF13333 Integrase core domain CDO11_RS22760 PF01527 Transposase CDO11_RS22790 PF04264 YceI-like domain CDO11_RS22795 PF00881 Nitroreductase family CDO11_RS22820 PF02592 Putative vitamin uptake transporter CDO11_RS22825 PF08335 GlnD PII-uridylyltransferase CDO11_RS22825 PF03710 Glutamate-ammonia ligase adenylyltransferase CDO11_RS22835 PF08450 SMP-30/Gluconolactonase/LRE-like region CDO11_RS22875 PF00793 DAHP synthetase I family CDO11_RS22890 PF00593 TonB dependent receptor CDO11_RS22890 PF07715 TonB-dependent Receptor Plug Domain CDO11_RS22900 PF00118 TCP-1/cpn60 chaperonin family CDO11_RS22905 PF00166 Chaperonin 10 Kd subunit CDO11_RS22925 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_RS22935 PF04545 Sigma-70, region 4 CDO11_RS22935 PF04542 Sigma-70 region 2 CDO11_RS22940 PF03167 Uracil DNA glycosylase superfamily CDO11_RS22945 PF00072 Response regulator receiver domain CDO11_RS22950 PF18075 FtsX extracellular domain CDO11_RS22955 PF00005 ABC transporter CDO11_RS22960 PF00270 DEAD/DEAH box helicase CDO11_RS22960 PF00271 Helicase conserved C-terminal domain CDO11_RS22960 PF12300 ATP-dependent RNA helicase RhlB CDO11_RS22965 PF00085 Thioredoxin CDO11_RS22970 PF07498 Rho termination factor, N-terminal domain CDO11_RS22970 PF07497 Rho termination factor, RNA-binding domain CDO11_RS22970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_RS22985 PF17243 POTRA domain TamA domain 1 CDO11_RS22985 PF01103 Surface antigen CDO11_RS22990 PF04357 TamB, inner membrane protein subunit of TAM complex CDO11_RS23025 PF07977 FabA-like domain CDO11_RS23030 PF01553 Acyltransferase CDO11_RS23040 PF00550 Phosphopantetheine attachment site CDO11_RS23045 PF04820 Tryptophan halogenase CDO11_RS23100 PF01638 HxlR-like helix-turn-helix CDO11_RS23105 PF05368 NmrA-like family CDO11_RS23115 PF03812 2-keto-3-deoxygluconate permease CDO11_RS23120 PF08267 Cobalamin-independent synthase, N-terminal domain CDO11_RS23120 PF01717 Cobalamin-independent synthase, Catalytic domain CDO11_RS23130 PF03358 NADPH-dependent FMN reductase CDO11_RS23135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS23135 PF03466 LysR substrate binding domain CDO11_RS23140 PF02677 Epoxyqueuosine reductase QueH CDO11_RS23160 PF00486 Transcriptional regulatory protein, C terminal CDO11_RS23160 PF00072 Response regulator receiver domain CDO11_RS23165 PF00551 Formyl transferase CDO11_RS23185 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO11_RS23185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO11_RS23190 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO11_RS23195 PF02146 Sir2 family CDO11_RS23205 PF07690 Major Facilitator Superfamily CDO11_RS23210 PF03466 LysR substrate binding domain CDO11_RS23210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS23230 PF01026 TatD related DNase CDO11_RS23280 PF00266 Aminotransferase class-V CDO11_RS23295 PF01014 Uricase CDO11_RS23295 PF09349 OHCU decarboxylase CDO11_RS23345 PF00326 Prolyl oligopeptidase family CDO11_RS23350 PF18140 Propionyl-coenzyme A carboxylase BT domain CDO11_RS23350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO11_RS23350 PF00364 Biotin-requiring enzyme CDO11_RS23350 PF00289 Biotin carboxylase, N-terminal domain CDO11_RS23350 PF02785 Biotin carboxylase C-terminal domain CDO11_RS23355 PF01039 Carboxyl transferase domain CDO11_RS23360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_RS23360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_RS23360 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_RS23415 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDO11_RS23415 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDO11_RS23435 PF03969 AFG1-like ATPase CDO11_RS23455 PF13181 Tetratricopeptide repeat CDO11_RS23460 PF05746 DALR anticodon binding domain CDO11_RS23460 PF02092 Glycyl-tRNA synthetase beta subunit CDO11_RS23465 PF02091 Glycyl-tRNA synthetase alpha subunit CDO11_RS23470 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDO11_RS23470 PF00437 Type II/IV secretion system protein CDO11_RS23500 PF00117 Glutamine amidotransferase class-I CDO11_RS23500 PF00958 GMP synthase C terminal domain CDO11_RS23510 PF00902 Sec-independent protein translocase protein (TatC) CDO11_RS23515 PF02416 mttA/Hcf106 family CDO11_RS23520 PF02416 mttA/Hcf106 family CDO11_RS23530 PF00762 Ferrochelatase CDO11_RS23535 PF12697 Alpha/beta hydrolase family CDO11_RS23560 PF04381 Putative exonuclease, RdgC CDO11_RS23565 PF01171 PP-loop family CDO11_RS23580 PF00356 Bacterial regulatory proteins, lacI family CDO11_RS23585 PF03648 Glycosyl hydrolase family 67 N-terminus CDO11_RS23585 PF07488 Glycosyl hydrolase family 67 middle domain CDO11_RS23585 PF07477 Glycosyl hydrolase family 67 C-terminus CDO11_RS23595 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_RS23595 PF13378 Enolase C-terminal domain-like CDO11_RS23600 PF04616 Glycosyl hydrolases family 43 CDO11_RS23600 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CDO11_RS23605 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_RS23605 PF14310 Fibronectin type III-like domain CDO11_RS23605 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_RS23605 PF07691 PA14 domain CDO11_RS23610 PF01232 Mannitol dehydrogenase Rossmann domain CDO11_RS23610 PF08125 Mannitol dehydrogenase C-terminal domain CDO11_RS23630 PF02614 Glucuronate isomerase CDO11_RS23635 PF00331 Glycosyl hydrolase family 10 CDO11_RS23635 PF03422 Carbohydrate binding module (family 6) CDO11_RS23635 PF00553 Cellulose binding domain CDO11_RS23665 PF04616 Glycosyl hydrolases family 43 CDO11_RS23705 PF12792 CSS motif domain associated with EAL CDO11_RS23705 PF00563 EAL domain CDO11_RS23710 PF00487 Fatty acid desaturase CDO11_RS23715 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO11_RS23715 PF00970 Oxidoreductase FAD-binding domain CDO11_RS23715 PF00175 Oxidoreductase NAD-binding domain CDO11_RS23720 PF00440 Bacterial regulatory proteins, tetR family CDO11_RS23755 PF01047 MarR family CDO11_RS23760 PF02566 OsmC-like protein CDO11_RS23855 PF01381 Helix-turn-helix CDO11_RS23860 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB CDO11_RS23865 PF13538 UvrD-like helicase C-terminal domain CDO11_RS23870 PF13361 UvrD-like helicase C-terminal domain CDO11_RS23870 PF00580 UvrD/REP helicase N-terminal domain CDO11_RS23870 PF12705 PD-(D/E)XK nuclease superfamily CDO11_RS23875 PF17946 RecC C-terminal domain CDO11_RS23920 PF00080 Copper/zinc superoxide dismutase (SODC) CDO11_RS23925 PF00080 Copper/zinc superoxide dismutase (SODC) CDO11_RS23930 PF00158 Sigma-54 interaction domain CDO11_RS23930 PF00072 Response regulator receiver domain CDO11_RS23930 PF02954 Bacterial regulatory protein, Fis family CDO11_RS23935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_RS23935 PF00989 PAS fold CDO11_RS23935 PF00512 His Kinase A (phospho-acceptor) domain CDO11_RS23940 PF00909 Ammonium Transporter Family CDO11_RS23945 PF00543 Nitrogen regulatory protein P-II CDO11_RS23950 PF03951 Glutamine synthetase, beta-Grasp domain CDO11_RS23950 PF00120 Glutamine synthetase, catalytic domain CDO11_RS23955 PF02673 Bacitracin resistance protein BacA CDO11_RS23995 PF03061 Thioesterase superfamily CDO11_RS24000 PF13091 PLD-like domain CDO11_RS24015 PF10609 NUBPL iron-transfer P-loop NTPase CDO11_RS24015 PF01883 Iron-sulfur cluster assembly protein CDO11_RS24035 PF01381 Helix-turn-helix CDO11_RS24040 PF07804 HipA-like C-terminal domain CDO11_RS24040 PF13657 HipA N-terminal domain CDO11_RS24045 PF10017 Histidine-specific methyltransferase, SAM-dependent CDO11_RS24050 PF12867 DinB superfamily CDO11_RS24050 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_RS24060 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_RS24065 PF00571 CBS domain CDO11_RS24065 PF00005 ABC transporter CDO11_RS24080 PF00005 ABC transporter CDO11_RS24090 PF01734 Patatin-like phospholipase CDO11_RS24105 PF05598 Transposase domain (DUF772) CDO11_RS24105 PF01609 Transposase DDE domain CDO11_RS24130 PF00248 Aldo/keto reductase family CDO11_RS24135 PF16884 N-terminal domain of oxidoreductase CDO11_RS24135 PF00107 Zinc-binding dehydrogenase CDO11_RS24140 PF00248 Aldo/keto reductase family CDO11_RS24150 PF00849 RNA pseudouridylate synthase CDO11_RS24165 PF08482 ATP-dependent helicase C-terminal CDO11_RS24165 PF00270 DEAD/DEAH box helicase CDO11_RS24165 PF04408 Helicase associated domain (HA2) CDO11_RS24165 PF00271 Helicase conserved C-terminal domain CDO11_RS24170 PF07308 Protein of unknown function (DUF1456) CDO11_RS24175 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_RS24175 PF13378 Enolase C-terminal domain-like CDO11_RS24185 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDO11_RS24200 PF00248 Aldo/keto reductase family CDO11_RS24210 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CDO11_RS24210 PF04616 Glycosyl hydrolases family 43 CDO11_RS24235 PF00072 Response regulator receiver domain CDO11_RS24235 PF00196 Bacterial regulatory proteins, luxR family CDO11_RS24240 PF13193 AMP-binding enzyme C-terminal domain CDO11_RS24240 PF00501 AMP-binding enzyme CDO11_RS24240 PF16177 Acetyl-coenzyme A synthetase N-terminus CDO11_RS24255 PF04341 Protein of unknown function, DUF485 CDO11_RS24260 PF00474 Sodium:solute symporter family CDO11_RS24275 PF03372 Endonuclease/Exonuclease/phosphatase family CDO11_RS24285 PF04226 Transglycosylase associated protein CDO11_RS24290 PF01648 4'-phosphopantetheinyl transferase superfamily CDO11_RS24295 PF16655 PhoD-like phosphatase, N-terminal domain CDO11_RS24295 PF09423 PhoD-like phosphatase CDO11_RS24300 PF16655 PhoD-like phosphatase, N-terminal domain CDO11_RS24300 PF09423 PhoD-like phosphatase CDO11_RS24305 PF02527 rRNA small subunit methyltransferase G CDO11_RS24320 PF00830 Ribosomal L28 family CDO11_RS24325 PF00471 Ribosomal protein L33 CDO11_RS24330 PF04909 Amidohydrolase CDO11_RS24350 PF04303 PrpF protein CDO11_RS24355 PF03737 Aldolase/RraA CDO11_RS24360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_RS24360 PF03466 LysR substrate binding domain CDO11_RS24365 PF13396 Phospholipase_D-nuclease N-terminal CDO11_RS24365 PF13091 PLD-like domain CDO11_RS24385 PF13361 UvrD-like helicase C-terminal domain CDO11_RS24385 PF00580 UvrD/REP helicase N-terminal domain CDO11_RS24400 PF13520 Amino acid permease CDO11_RS24410 PF02646 RmuC family CDO11_RS24420 PF00255 Glutathione peroxidase CDO11_RS24440 PF04055 Radical SAM superfamily CDO11_RS24450 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CDO11_RS24465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO11_RS24465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO11_RS24475 PF03572 Peptidase family S41 CDO11_RS24475 PF13180 PDZ domain CDO11_RS24480 PF01551 Peptidase family M23 CDO11_RS24490 PF04389 Peptidase family M28 CDO11_RS24540 PF02463 RecF/RecN/SMC N terminal domain CDO11_RS24545 PF01227 GTP cyclohydrolase I CDO11_RS24570 PF00083 Sugar (and other) transporter CDO11_RS24670 PF02595 Glycerate kinase family CDO11_RS24675 PF07690 Major Facilitator Superfamily CDO11_RS24690 PF10672 S-adenosylmethionine-dependent methyltransferase CDO11_RS24690 PF17785 PUA-like domain CDO11_RS24700 PF03741 Integral membrane protein TerC family CDO11_RS24705 PF01694 Rhomboid family CDO11_RS24710 PF03009 Glycerophosphoryl diester phosphodiesterase family CDO11_RS24720 PF01569 PAP2 superfamily CDO11_RS24725 PF01926 50S ribosome-binding GTPase CDO11_RS24725 PF10396 GTP-binding protein TrmE N-terminus CDO11_RS24725 PF12631 MnmE helical domain CDO11_RS24730 PF01522 Polysaccharide deacetylase CDO11_RS24735 PF02096 60Kd inner membrane protein CDO11_RS24735 PF14849 YidC periplasmic domain CDO11_RS24740 PF00825 Ribonuclease P CDO11_RS24745 PF00468 Ribosomal protein L34