ATY42_RS00080	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS00085	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_RS00085	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
ATY42_RS00085	PWY-6638	sulfolactate degradation III
ATY42_RS00085	PWY-6642	(<i>R</i>)-cysteate degradation
ATY42_RS00085	PWY-6643	coenzyme M biosynthesis II
ATY42_RS00085	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY42_RS00085	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY42_RS00085	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY42_RS00115	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_RS00130	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY42_RS00130	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY42_RS00130	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY42_RS00130	PWY-6113	superpathway of mycolate biosynthesis
ATY42_RS00130	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY42_RS00130	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_RS00130	PWY-7663	gondoate biosynthesis (anaerobic)
ATY42_RS00130	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY42_RS00130	PWYG-321	mycolate biosynthesis
ATY42_RS00325	PWY-2661	trehalose biosynthesis V
ATY42_RS00330	PWY-5941	glycogen degradation II (eukaryotic)
ATY42_RS00330	PWY-6724	starch degradation II
ATY42_RS00330	PWY-6737	starch degradation V
ATY42_RS00330	PWY-7238	sucrose biosynthesis II
ATY42_RS00335	PWY-2661	trehalose biosynthesis V
ATY42_RS00335	PWY-6902	chitin degradation II
ATY42_RS00340	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
ATY42_RS00340	PWY-622	starch biosynthesis
ATY42_RS00345	PWY-622	starch biosynthesis
ATY42_RS00435	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS00820	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY42_RS00825	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY42_RS00850	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
ATY42_RS00850	PWY-622	starch biosynthesis
ATY42_RS00855	PWY-2622	trehalose biosynthesis IV
ATY42_RS00925	PWY-6902	chitin degradation II
ATY42_RS00925	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
ATY42_RS00950	PWY-40	putrescine biosynthesis I
ATY42_RS00950	PWY-43	putrescine biosynthesis II
ATY42_RS00950	PWY-6305	putrescine biosynthesis IV
ATY42_RS00950	PWY-6834	spermidine biosynthesis III
ATY42_RS01020	PWY-2201	folate transformations I
ATY42_RS01020	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_RS01030	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_RS01060	PWY-7199	pyrimidine deoxyribonucleosides salvage
ATY42_RS01090	PWY-5686	UMP biosynthesis
ATY42_RS01120	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY42_RS01120	PWY-6453	stigma estolide biosynthesis
ATY42_RS01120	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
ATY42_RS01120	PWY-7587	oleate biosynthesis III (cyanobacteria)
ATY42_RS01165	PWY-6134	L-tyrosine biosynthesis IV
ATY42_RS01165	PWY-7158	L-phenylalanine degradation V
ATY42_RS01475	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_RS01475	PWY-6416	quinate degradation II
ATY42_RS01475	PWY-6707	gallate biosynthesis
ATY42_RS01480	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_RS01480	PWY-6416	quinate degradation II
ATY42_RS01480	PWY-6707	gallate biosynthesis
ATY42_RS01505	PWY-5530	sorbitol biosynthesis II
ATY42_RS01625	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_RS01625	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_RS01710	PWY-6654	phosphopantothenate biosynthesis III
ATY42_RS01825	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_RS01825	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ATY42_RS01865	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_RS01965	PWY-3961	phosphopantothenate biosynthesis II
ATY42_RS01980	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY42_RS01980	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_RS01980	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_RS01980	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
ATY42_RS01980	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY42_RS01980	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY42_RS02000	PWY-31	canavanine degradation
ATY42_RS02000	PWY-4984	urea cycle
ATY42_RS02000	PWY-6305	putrescine biosynthesis IV
ATY42_RS02000	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY42_RS02120	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
ATY42_RS02125	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_RS02125	PWY-6578	8-amino-7-oxononanoate biosynthesis III
ATY42_RS02125	PWY-7147	8-amino-7-oxononanoate biosynthesis II
ATY42_RS02185	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY42_RS02210	PWY-5392	reductive TCA cycle II
ATY42_RS02210	PWY-5537	pyruvate fermentation to acetate V
ATY42_RS02210	PWY-5538	pyruvate fermentation to acetate VI
ATY42_RS02210	PWY-5690	TCA cycle II (plants and fungi)
ATY42_RS02210	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_RS02210	PWY-6728	methylaspartate cycle
ATY42_RS02210	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_RS02210	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY42_RS02220	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY42_RS02220	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_RS02220	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY42_RS02220	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY42_RS02220	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_RS02220	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_RS02220	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_RS02220	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ATY42_RS02225	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY42_RS02225	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_RS02225	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY42_RS02225	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY42_RS02225	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_RS02225	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_RS02225	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_RS02225	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ATY42_RS02260	PWY-1361	benzoyl-CoA degradation I (aerobic)
ATY42_RS02260	PWY-2361	3-oxoadipate degradation
ATY42_RS02260	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
ATY42_RS02280	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY42_RS02280	PWY-6124	inosine-5'-phosphate biosynthesis II
ATY42_RS02280	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS02280	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY42_RS02285	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
ATY42_RS02345	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY42_RS02345	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_RS02345	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_RS02345	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
ATY42_RS02350	PWY-6749	CMP-legionaminate biosynthesis I
ATY42_RS02360	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
ATY42_RS02360	PWY-622	starch biosynthesis
ATY42_RS02395	PWY-5686	UMP biosynthesis
ATY42_RS02510	PWY-6857	retinol biosynthesis
ATY42_RS02515	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_RS02570	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY42_RS02570	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY42_RS02570	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY42_RS02580	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY42_RS02580	PWY-6124	inosine-5'-phosphate biosynthesis II
ATY42_RS02580	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY42_RS02670	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_RS02670	PWY-6416	quinate degradation II
ATY42_RS02670	PWY-6707	gallate biosynthesis
ATY42_RS02810	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_RS02845	PWY-6168	flavin biosynthesis III (fungi)
ATY42_RS02845	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY42_RS03330	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY42_RS03480	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
ATY42_RS03480	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY42_RS03520	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS03530	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS03540	PWY-3461	L-tyrosine biosynthesis II
ATY42_RS03540	PWY-3462	L-phenylalanine biosynthesis II
ATY42_RS03540	PWY-6120	L-tyrosine biosynthesis III
ATY42_RS03540	PWY-6627	salinosporamide A biosynthesis
ATY42_RS03540	PWY-7626	bacilysin biosynthesis
ATY42_RS03550	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_RS03550	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY42_RS03550	PWY-6453	stigma estolide biosynthesis
ATY42_RS03550	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
ATY42_RS03550	PWY-7587	oleate biosynthesis III (cyanobacteria)
ATY42_RS03595	PWY-6749	CMP-legionaminate biosynthesis I
ATY42_RS03630	PWY-5386	methylglyoxal degradation I
ATY42_RS03670	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY42_RS03670	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY42_RS03670	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY42_RS03670	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY42_RS03670	PWY-6113	superpathway of mycolate biosynthesis
ATY42_RS03670	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY42_RS03670	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_RS03670	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_RS03670	PWY-7663	gondoate biosynthesis (anaerobic)
ATY42_RS03670	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY42_RS03670	PWYG-321	mycolate biosynthesis
ATY42_RS03680	PWY-181	photorespiration
ATY42_RS03695	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
ATY42_RS03825	PWY-3221	dTDP-L-rhamnose biosynthesis II
ATY42_RS03825	PWY-6808	dTDP-D-forosamine biosynthesis
ATY42_RS03825	PWY-6942	dTDP-D-desosamine biosynthesis
ATY42_RS03825	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
ATY42_RS03825	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
ATY42_RS03825	PWY-6974	dTDP-L-olivose biosynthesis
ATY42_RS03825	PWY-6976	dTDP-L-mycarose biosynthesis
ATY42_RS03825	PWY-7104	dTDP-L-megosamine biosynthesis
ATY42_RS03825	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
ATY42_RS03825	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
ATY42_RS03825	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
ATY42_RS03825	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
ATY42_RS03825	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
ATY42_RS03825	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
ATY42_RS03825	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
ATY42_RS03825	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
ATY42_RS03825	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
ATY42_RS03825	PWY-7688	ATY42_RS03825
ATY42_RS03830	PWY-3221	dTDP-L-rhamnose biosynthesis II
ATY42_RS03830	PWY-6808	dTDP-D-forosamine biosynthesis
ATY42_RS03830	PWY-6942	dTDP-D-desosamine biosynthesis
ATY42_RS03830	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
ATY42_RS03830	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
ATY42_RS03830	PWY-6974	dTDP-L-olivose biosynthesis
ATY42_RS03830	PWY-6976	dTDP-L-mycarose biosynthesis
ATY42_RS03830	PWY-7104	dTDP-L-megosamine biosynthesis
ATY42_RS03830	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
ATY42_RS03830	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
ATY42_RS03830	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
ATY42_RS03830	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
ATY42_RS03830	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
ATY42_RS03830	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
ATY42_RS03830	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
ATY42_RS03830	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
ATY42_RS03830	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
ATY42_RS03830	PWY-7688	ATY42_RS03830
ATY42_RS03845	PWY-5659	GDP-mannose biosynthesis
ATY42_RS03845	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
ATY42_RS03850	PWY-6749	CMP-legionaminate biosynthesis I
ATY42_RS03920	PWY-5669	phosphatidylethanolamine biosynthesis I
ATY42_RS03995	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_RS04045	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY42_RS04045	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY42_RS04045	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY42_RS04235	PWY-4381	fatty acid biosynthesis initiation I
ATY42_RS04245	PWY-4381	fatty acid biosynthesis initiation I
ATY42_RS04245	PWY-6799	fatty acid biosynthesis (plant mitochondria)
ATY42_RS04245	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_RS04250	PWY-5367	petroselinate biosynthesis
ATY42_RS04250	PWY-5515	L-arabinose degradation II
ATY42_RS04250	PWY-5525	D-glucuronate degradation I
ATY42_RS04250	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY42_RS04250	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY42_RS04250	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY42_RS04250	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY42_RS04250	PWY-6113	superpathway of mycolate biosynthesis
ATY42_RS04250	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY42_RS04250	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_RS04250	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_RS04250	PWY-7663	gondoate biosynthesis (anaerobic)
ATY42_RS04250	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY42_RS04250	PWYG-321	mycolate biosynthesis
ATY42_RS04265	PWY-5958	acridone alkaloid biosynthesis
ATY42_RS04265	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ATY42_RS04265	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ATY42_RS04300	PWY-5747	2-methylcitrate cycle II
ATY42_RS04410	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS04465	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
ATY42_RS04520	PWY-7396	butanol and isobutanol biosynthesis (engineered)
ATY42_RS04525	PWY-6871	3-methylbutanol biosynthesis
ATY42_RS04540	PWY-5101	L-isoleucine biosynthesis II
ATY42_RS04540	PWY-5103	L-isoleucine biosynthesis III
ATY42_RS04540	PWY-5104	L-isoleucine biosynthesis IV
ATY42_RS04540	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
ATY42_RS04540	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
ATY42_RS04540	PWY-6389	(<i>S</i>)-acetoin biosynthesis
ATY42_RS04540	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY42_RS04545	PWY-5103	L-isoleucine biosynthesis III
ATY42_RS04545	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY42_RS04555	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
ATY42_RS04615	PWY-1042	glycolysis IV (plant cytosol)
ATY42_RS04615	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_RS04615	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS04615	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_RS04620	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS04655	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_RS04655	PWY-5392	reductive TCA cycle II
ATY42_RS04655	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY42_RS04655	PWY-5690	TCA cycle II (plants and fungi)
ATY42_RS04655	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_RS04655	PWY-6728	methylaspartate cycle
ATY42_RS04655	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_RS04655	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY42_RS04655	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY42_RS04675	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ATY42_RS04685	PWY-6164	3-dehydroquinate biosynthesis I
ATY42_RS04990	PWY-5386	methylglyoxal degradation I
ATY42_RS05095	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
ATY42_RS05095	PWY-7676	Kdo8N transfer to lipid IV<sub>A</sub>
ATY42_RS05105	PWY-6823	molybdenum cofactor biosynthesis
ATY42_RS05125	PWY-6823	molybdenum cofactor biosynthesis
ATY42_RS05210	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
ATY42_RS05220	PWY-6769	rhamnogalacturonan type I degradation I (fungi)
ATY42_RS05220	PWY-6771	rhamnogalacturonan type I degradation II (bacteria)
ATY42_RS05330	PWY-5676	acetyl-CoA fermentation to butanoate II
ATY42_RS05330	PWY-5741	ethylmalonyl-CoA pathway
ATY42_RS05330	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY42_RS05420	PWY-1281	sulfoacetaldehyde degradation I
ATY42_RS05420	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY42_RS05420	PWY-5482	pyruvate fermentation to acetate II
ATY42_RS05420	PWY-5485	pyruvate fermentation to acetate IV
ATY42_RS05420	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY42_RS05420	PWY-6637	sulfolactate degradation II
ATY42_RS05420	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY42_RS05460	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ATY42_RS05460	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ATY42_RS05460	PWY-6897	thiamin salvage II
ATY42_RS05460	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
ATY42_RS05460	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
ATY42_RS05460	PWY-7356	thiamin salvage IV (yeast)
ATY42_RS05460	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ATY42_RS05480	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_RS05480	PWY-5723	Rubisco shunt
ATY42_RS05560	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
ATY42_RS05580	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS05730	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_RS05730	PWY-5723	Rubisco shunt
ATY42_RS05730	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY42_RS05730	PWY-6892	thiazole biosynthesis I (E. coli)
ATY42_RS05730	PWY-6901	superpathway of glucose and xylose degradation
ATY42_RS05730	PWY-7560	methylerythritol phosphate pathway II
ATY42_RS05865	PWY-1042	glycolysis IV (plant cytosol)
ATY42_RS05865	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS05865	PWY-6901	superpathway of glucose and xylose degradation
ATY42_RS05865	PWY-7003	glycerol degradation to butanol
ATY42_RS06000	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_RS06090	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
ATY42_RS06090	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
ATY42_RS06100	PWY-6164	3-dehydroquinate biosynthesis I
ATY42_RS06105	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_RS06110	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
ATY42_RS06110	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ATY42_RS06320	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY42_RS06320	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ATY42_RS06335	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_RS06335	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_RS06355	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY42_RS06355	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
ATY42_RS06370	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY42_RS06370	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY42_RS06370	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY42_RS06470	PWY-6317	galactose degradation I (Leloir pathway)
ATY42_RS06500	PWY-723	alkylnitronates degradation
ATY42_RS06520	PWY-6829	tRNA methylation (yeast)
ATY42_RS06520	PWY-7285	methylwyosine biosynthesis
ATY42_RS06520	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
ATY42_RS06620	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
ATY42_RS06620	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
ATY42_RS06620	PWY-6268	adenosylcobalamin salvage from cobalamin
ATY42_RS06620	PWY-6269	adenosylcobalamin salvage from cobinamide II
ATY42_RS06630	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
ATY42_RS06630	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
ATY42_RS06630	PWY-6269	adenosylcobalamin salvage from cobinamide II
ATY42_RS06635	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
ATY42_RS06635	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
ATY42_RS06635	PWY-6269	adenosylcobalamin salvage from cobinamide II
ATY42_RS06645	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
ATY42_RS06645	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
ATY42_RS06645	PWY-6269	adenosylcobalamin salvage from cobinamide II
ATY42_RS06870	PWY-6823	molybdenum cofactor biosynthesis
ATY42_RS06870	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY42_RS06870	PWY-6892	thiazole biosynthesis I (E. coli)
ATY42_RS06870	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
ATY42_RS06945	PWY-3341	L-proline biosynthesis III
ATY42_RS06945	PWY-4981	L-proline biosynthesis II (from arginine)
ATY42_RS06945	PWY-6344	L-ornithine degradation II (Stickland reaction)
ATY42_RS06950	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY42_RS07010	PWY-5686	UMP biosynthesis
ATY42_RS07045	PWY-2941	L-lysine biosynthesis II
ATY42_RS07045	PWY-2942	L-lysine biosynthesis III
ATY42_RS07045	PWY-5097	L-lysine biosynthesis VI
ATY42_RS07045	PWY-6559	spermidine biosynthesis II
ATY42_RS07045	PWY-6562	norspermidine biosynthesis
ATY42_RS07045	PWY-7153	grixazone biosynthesis
ATY42_RS07060	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_RS07060	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_RS07220	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_RS07220	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS07380	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_RS07820	PWY-5392	reductive TCA cycle II
ATY42_RS07820	PWY-5537	pyruvate fermentation to acetate V
ATY42_RS07820	PWY-5538	pyruvate fermentation to acetate VI
ATY42_RS07820	PWY-5690	TCA cycle II (plants and fungi)
ATY42_RS07820	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_RS07820	PWY-6728	methylaspartate cycle
ATY42_RS07820	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_RS07820	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY42_RS07825	PWY-5392	reductive TCA cycle II
ATY42_RS07825	PWY-5537	pyruvate fermentation to acetate V
ATY42_RS07825	PWY-5538	pyruvate fermentation to acetate VI
ATY42_RS07825	PWY-5690	TCA cycle II (plants and fungi)
ATY42_RS07825	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_RS07825	PWY-6728	methylaspartate cycle
ATY42_RS07825	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_RS07825	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY42_RS07835	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_RS07835	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
ATY42_RS07995	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
ATY42_RS07995	PWY-6167	flavin biosynthesis II (archaea)
ATY42_RS07995	PWY-6168	flavin biosynthesis III (fungi)
ATY42_RS08025	PWY-3781	aerobic respiration I (cytochrome c)
ATY42_RS08025	PWY-4521	arsenite oxidation I (respiratory)
ATY42_RS08025	PWY-6692	Fe(II) oxidation
ATY42_RS08025	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY42_RS08025	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
ATY42_RS08250	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY42_RS08315	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY42_RS08355	PWY-2722	trehalose degradation IV
ATY42_RS08355	PWY-2723	trehalose degradation V
ATY42_RS08355	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_RS08355	PWY-5661	GDP-glucose biosynthesis
ATY42_RS08355	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_RS08355	PWY-7238	sucrose biosynthesis II
ATY42_RS08355	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_RS08360	PWY-2722	trehalose degradation IV
ATY42_RS08360	PWY-2723	trehalose degradation V
ATY42_RS08360	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_RS08360	PWY-5661	GDP-glucose biosynthesis
ATY42_RS08360	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_RS08360	PWY-7238	sucrose biosynthesis II
ATY42_RS08360	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_RS08365	PWY-2722	trehalose degradation IV
ATY42_RS08365	PWY-2723	trehalose degradation V
ATY42_RS08365	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_RS08365	PWY-5661	GDP-glucose biosynthesis
ATY42_RS08365	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_RS08365	PWY-7238	sucrose biosynthesis II
ATY42_RS08365	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_RS08400	PWY-6420	pyrroloquinoline quinone biosynthesis
ATY42_RS08425	PWY-1001	cellulose biosynthesis
ATY42_RS08425	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_RS08425	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY42_RS08425	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_RS08425	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_RS08440	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
ATY42_RS08440	PWY-5368	dimorphecolate biosynthesis
ATY42_RS08440	PWY-5995	linoleate biosynthesis I (plants)
ATY42_RS08440	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
ATY42_RS08440	PWY-6803	phosphatidylcholine acyl editing
ATY42_RS08440	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
ATY42_RS08440	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
ATY42_RS08440	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
ATY42_RS08440	PWY-7470	phosphatidylcholine biosynthesis VII
ATY42_RS08440	PWY-7618	ricinoleate biosynthesis
ATY42_RS08575	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY42_RS08655	PWY-6902	chitin degradation II
ATY42_RS08680	PWY-2722	trehalose degradation IV
ATY42_RS08680	PWY-2723	trehalose degradation V
ATY42_RS08680	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_RS08680	PWY-5661	GDP-glucose biosynthesis
ATY42_RS08680	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_RS08680	PWY-7238	sucrose biosynthesis II
ATY42_RS08680	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_RS08685	PWY-2201	folate transformations I
ATY42_RS08825	PWY-5344	L-homocysteine biosynthesis
ATY42_RS08925	PWY-5642	2,4-dinitrotoluene degradation
ATY42_RS08925	PWY-6373	acrylate degradation
ATY42_RS08955	PWY-1361	benzoyl-CoA degradation I (aerobic)
ATY42_RS08955	PWY-5109	2-methylbutanoate biosynthesis
ATY42_RS08955	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
ATY42_RS08955	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
ATY42_RS08955	PWY-5177	glutaryl-CoA degradation
ATY42_RS08955	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_RS08955	PWY-6435	4-hydroxybenzoate biosynthesis V
ATY42_RS08955	PWY-6583	pyruvate fermentation to butanol I
ATY42_RS08955	PWY-6863	pyruvate fermentation to hexanol
ATY42_RS08955	PWY-6883	pyruvate fermentation to butanol II
ATY42_RS08955	PWY-6944	androstenedione degradation
ATY42_RS08955	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ATY42_RS08955	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ATY42_RS08955	PWY-7007	methyl ketone biosynthesis
ATY42_RS08955	PWY-7046	4-coumarate degradation (anaerobic)
ATY42_RS08955	PWY-7094	fatty acid salvage
ATY42_RS08955	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY42_RS08955	PWY-735	jasmonic acid biosynthesis
ATY42_RS08955	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
ATY42_RS08955	PWY-7606	docosahexaenoate biosynthesis III (mammals)
ATY42_RS08955	PWY-7726	ATY42_RS08955
ATY42_RS09045	PWY-6902	chitin degradation II
ATY42_RS09445	PWY-5340	sulfate activation for sulfonation
ATY42_RS09525	PWY-4381	fatty acid biosynthesis initiation I
ATY42_RS09525	PWY-5743	3-hydroxypropanoate cycle
ATY42_RS09525	PWY-5744	glyoxylate assimilation
ATY42_RS09525	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_RS09525	PWY-6679	jadomycin biosynthesis
ATY42_RS09525	PWY-6722	candicidin biosynthesis
ATY42_RS09525	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_RS09540	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
ATY42_RS09540	PWY-622	starch biosynthesis
ATY42_RS09550	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY42_RS09550	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY42_RS09550	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY42_RS09550	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY42_RS09550	PWY-6113	superpathway of mycolate biosynthesis
ATY42_RS09550	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY42_RS09550	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_RS09550	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_RS09550	PWY-7663	gondoate biosynthesis (anaerobic)
ATY42_RS09550	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY42_RS09550	PWYG-321	mycolate biosynthesis
ATY42_RS09570	PWY-7294	xylose degradation IV
ATY42_RS09570	PWY-7295	L-arabinose degradation IV
ATY42_RS09570	PWY-7560	methylerythritol phosphate pathway II
ATY42_RS09575	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY42_RS09575	PWY-5981	CDP-diacylglycerol biosynthesis III
ATY42_RS09780	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_RS09780	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY42_RS09780	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_RS09780	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_RS09785	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY42_RS09785	PWY-6892	thiazole biosynthesis I (E. coli)
ATY42_RS09785	PWY-7560	methylerythritol phosphate pathway II
ATY42_RS09865	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
ATY42_RS09865	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ATY42_RS09870	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
ATY42_RS09910	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
ATY42_RS09910	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY42_RS09915	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY42_RS09920	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY42_RS09950	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY42_RS09950	PWY-6124	inosine-5'-phosphate biosynthesis II
ATY42_RS09950	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS09950	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY42_RS09990	PWY-5392	reductive TCA cycle II
ATY42_RS09990	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY42_RS09990	PWY-5690	TCA cycle II (plants and fungi)
ATY42_RS09990	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_RS09990	PWY-6728	methylaspartate cycle
ATY42_RS09990	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_RS09990	PWY-7254	TCA cycle VII (acetate-producers)
ATY42_RS09990	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY42_RS10040	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
ATY42_RS10080	PWY-2201	folate transformations I
ATY42_RS10080	PWY-3841	folate transformations II
ATY42_RS10140	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY42_RS10185	PWY-5344	L-homocysteine biosynthesis
ATY42_RS10285	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
ATY42_RS10395	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
ATY42_RS10395	PWY-5389	3-methylthiopropanoate biosynthesis
ATY42_RS10400	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
ATY42_RS10400	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_RS10400	PWY-6416	quinate degradation II
ATY42_RS10400	PWY-6707	gallate biosynthesis
ATY42_RS10570	PWY-5941	glycogen degradation II (eukaryotic)
ATY42_RS10570	PWY-6724	starch degradation II
ATY42_RS10570	PWY-6737	starch degradation V
ATY42_RS10570	PWY-7238	sucrose biosynthesis II
ATY42_RS10600	PWY-43	putrescine biosynthesis II
ATY42_RS10615	PWY-7205	CMP phosphorylation
ATY42_RS10640	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_RS10640	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_RS10640	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_RS10650	PWY-3801	sucrose degradation II (sucrose synthase)
ATY42_RS10650	PWY-6527	stachyose degradation
ATY42_RS10650	PWY-7238	sucrose biosynthesis II
ATY42_RS10650	PWY-7343	UDP-glucose biosynthesis
ATY42_RS10690	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
ATY42_RS10690	PWY-2201	folate transformations I
ATY42_RS10690	PWY-3841	folate transformations II
ATY42_RS10690	PWY-5030	L-histidine degradation III
ATY42_RS10690	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY42_RS10690	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
ATY42_RS10695	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ATY42_RS10695	PWY-6596	adenosine nucleotides degradation I
ATY42_RS10695	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS10700	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS10790	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS10805	PWY-6502	oxidized GTP and dGTP detoxification
ATY42_RS10920	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_RS10920	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_RS10930	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_RS10930	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_RS10935	PWY-5686	UMP biosynthesis
ATY42_RS10965	PWY-2941	L-lysine biosynthesis II
ATY42_RS10965	PWY-2942	L-lysine biosynthesis III
ATY42_RS10965	PWY-5097	L-lysine biosynthesis VI
ATY42_RS10965	PWY-6559	spermidine biosynthesis II
ATY42_RS10965	PWY-6562	norspermidine biosynthesis
ATY42_RS10965	PWY-7153	grixazone biosynthesis
ATY42_RS10970	PWY-702	L-methionine biosynthesis II
ATY42_RS11345	PWY-5269	cardiolipin biosynthesis II
ATY42_RS11345	PWY-5668	cardiolipin biosynthesis I
ATY42_RS11365	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY42_RS11425	PWY-3781	aerobic respiration I (cytochrome c)
ATY42_RS11425	PWY-4302	aerobic respiration III (alternative oxidase pathway)
ATY42_RS11425	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY42_RS11425	PWY-5690	TCA cycle II (plants and fungi)
ATY42_RS11425	PWY-6728	methylaspartate cycle
ATY42_RS11425	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_RS11425	PWY-7254	TCA cycle VII (acetate-producers)
ATY42_RS11425	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY42_RS11435	PWY-3781	aerobic respiration I (cytochrome c)
ATY42_RS11435	PWY-4302	aerobic respiration III (alternative oxidase pathway)
ATY42_RS11435	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY42_RS11435	PWY-5690	TCA cycle II (plants and fungi)
ATY42_RS11435	PWY-6728	methylaspartate cycle
ATY42_RS11435	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_RS11435	PWY-7254	TCA cycle VII (acetate-producers)
ATY42_RS11435	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY42_RS11465	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY42_RS11470	PWY-2722	trehalose degradation IV
ATY42_RS11470	PWY-2723	trehalose degradation V
ATY42_RS11470	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_RS11470	PWY-5661	GDP-glucose biosynthesis
ATY42_RS11470	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_RS11470	PWY-7238	sucrose biosynthesis II
ATY42_RS11470	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_RS11475	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_RS11475	PWY-6855	chitin degradation I (archaea)
ATY42_RS11475	PWY-6906	chitin derivatives degradation
ATY42_RS11480	PWY-5101	L-isoleucine biosynthesis II
ATY42_RS11480	PWY-5103	L-isoleucine biosynthesis III
ATY42_RS11480	PWY-5104	L-isoleucine biosynthesis IV
ATY42_RS11480	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY42_RS11485	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_RS11485	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY42_RS11485	PWY-7242	D-fructuronate degradation
ATY42_RS11485	PWY-7310	D-glucosaminate degradation
ATY42_RS11485	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
ATY42_RS11580	PWY-6803	phosphatidylcholine acyl editing
ATY42_RS11580	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
ATY42_RS11580	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
ATY42_RS11580	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
ATY42_RS11595	PWY-5392	reductive TCA cycle II
ATY42_RS11595	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY42_RS11595	PWY-5690	TCA cycle II (plants and fungi)
ATY42_RS11595	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_RS11595	PWY-6728	methylaspartate cycle
ATY42_RS11595	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_RS11595	PWY-7254	TCA cycle VII (acetate-producers)
ATY42_RS11595	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY42_RS11730	PWY-3801	sucrose degradation II (sucrose synthase)
ATY42_RS11730	PWY-5054	sorbitol biosynthesis I
ATY42_RS11730	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
ATY42_RS11730	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_RS11730	PWY-5659	GDP-mannose biosynthesis
ATY42_RS11730	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS11730	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_RS11730	PWY-622	starch biosynthesis
ATY42_RS11730	PWY-6981	chitin biosynthesis
ATY42_RS11730	PWY-6992	1,5-anhydrofructose degradation
ATY42_RS11730	PWY-7238	sucrose biosynthesis II
ATY42_RS11730	PWY-7347	sucrose biosynthesis III
ATY42_RS11730	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_RS11735	PWY-5155	&beta;-alanine biosynthesis III
ATY42_RS11745	PWY-6654	phosphopantothenate biosynthesis III
ATY42_RS11750	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY42_RS11750	PWY-6148	tetrahydromethanopterin biosynthesis
ATY42_RS11750	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
ATY42_RS11750	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY42_RS11765	PWY-5663	tetrahydrobiopterin biosynthesis I
ATY42_RS11765	PWY-5664	tetrahydrobiopterin biosynthesis II
ATY42_RS11765	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY42_RS11765	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY42_RS11765	PWY-6983	tetrahydrobiopterin biosynthesis III
ATY42_RS11765	PWY-7442	drosopterin and aurodrosopterin biosynthesis
ATY42_RS11845	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_RS11850	PWY-3461	L-tyrosine biosynthesis II
ATY42_RS11850	PWY-3462	L-phenylalanine biosynthesis II
ATY42_RS11850	PWY-6120	L-tyrosine biosynthesis III
ATY42_RS11850	PWY-6627	salinosporamide A biosynthesis
ATY42_RS11850	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
ATY42_RS11850	PWY-7626	bacilysin biosynthesis
ATY42_RS11900	PWY-5028	L-histidine degradation II
ATY42_RS11900	PWY-5030	L-histidine degradation III
ATY42_RS11905	PWY-5028	L-histidine degradation II
ATY42_RS11905	PWY-5030	L-histidine degradation III
ATY42_RS11915	PWY-5028	L-histidine degradation II
ATY42_RS11915	PWY-5030	L-histidine degradation III
ATY42_RS11945	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
ATY42_RS11945	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
ATY42_RS12035	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY42_RS12035	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS12035	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY42_RS12035	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY42_RS12040	PWY-5647	2-nitrobenzoate degradation I
ATY42_RS12040	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ATY42_RS12040	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ATY42_RS12040	PWY-6505	L-tryptophan degradation XII (Geobacillus)
ATY42_RS12050	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ATY42_RS12050	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ATY42_RS12055	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ATY42_RS12055	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ATY42_RS12055	PWY-7717	ATY42_RS12055
ATY42_RS12080	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_RS12080	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ATY42_RS12080	PWY-6596	adenosine nucleotides degradation I
ATY42_RS12080	PWY-6606	guanosine nucleotides degradation II
ATY42_RS12080	PWY-6607	guanosine nucleotides degradation I
ATY42_RS12080	PWY-6608	guanosine nucleotides degradation III
ATY42_RS12080	PWY-7185	UTP and CTP dephosphorylation I
ATY42_RS12085	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
ATY42_RS12085	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY42_RS12085	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
ATY42_RS12095	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_RS12180	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY42_RS12180	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS12180	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY42_RS12180	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY42_RS12310	PWY-6700	queuosine biosynthesis
ATY42_RS12315	PWY-6700	queuosine biosynthesis
ATY42_RS12360	PWY-4702	phytate degradation I
ATY42_RS12375	PWY-7183	pyrimidine nucleobases salvage I
ATY42_RS12400	PWY-4041	&gamma;-glutamyl cycle
ATY42_RS12400	PWY-5826	hypoglycin biosynthesis
ATY42_RS12425	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_RS12530	PWY-6823	molybdenum cofactor biosynthesis
ATY42_RS12560	PWY-2201	folate transformations I
ATY42_RS12565	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY42_RS12565	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
ATY42_RS12565	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_RS12565	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_RS12565	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
ATY42_RS12565	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY42_RS12565	PWY-7205	CMP phosphorylation
ATY42_RS12565	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY42_RS12565	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_RS12565	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS12565	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_RS12565	PWY-7224	purine deoxyribonucleosides salvage
ATY42_RS12565	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_RS12565	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ATY42_RS12575	PWY-1361	benzoyl-CoA degradation I (aerobic)
ATY42_RS12575	PWY-5109	2-methylbutanoate biosynthesis
ATY42_RS12575	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
ATY42_RS12575	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
ATY42_RS12575	PWY-5177	glutaryl-CoA degradation
ATY42_RS12575	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_RS12575	PWY-6435	4-hydroxybenzoate biosynthesis V
ATY42_RS12575	PWY-6583	pyruvate fermentation to butanol I
ATY42_RS12575	PWY-6863	pyruvate fermentation to hexanol
ATY42_RS12575	PWY-6883	pyruvate fermentation to butanol II
ATY42_RS12575	PWY-6944	androstenedione degradation
ATY42_RS12575	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ATY42_RS12575	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ATY42_RS12575	PWY-7007	methyl ketone biosynthesis
ATY42_RS12575	PWY-7046	4-coumarate degradation (anaerobic)
ATY42_RS12575	PWY-7094	fatty acid salvage
ATY42_RS12575	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY42_RS12575	PWY-735	jasmonic acid biosynthesis
ATY42_RS12575	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
ATY42_RS12575	PWY-7606	docosahexaenoate biosynthesis III (mammals)
ATY42_RS12575	PWY-7726	ATY42_RS12575
ATY42_RS12850	PWY-4381	fatty acid biosynthesis initiation I
ATY42_RS12910	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS13165	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
ATY42_RS13185	PWY-3341	L-proline biosynthesis III
ATY42_RS13185	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY42_RS13190	PWY-3341	L-proline biosynthesis III
ATY42_RS13190	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY42_RS13205	PWY-4983	L-citrulline-nitric oxide cycle
ATY42_RS13205	PWY-4984	urea cycle
ATY42_RS13205	PWY-5	canavanine biosynthesis
ATY42_RS13205	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_RS13205	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_RS13210	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_RS13210	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_RS13220	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_RS13220	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_RS13235	PWY-4983	L-citrulline-nitric oxide cycle
ATY42_RS13235	PWY-4984	urea cycle
ATY42_RS13235	PWY-5	canavanine biosynthesis
ATY42_RS13235	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_RS13235	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_RS13240	PWY-5686	UMP biosynthesis
ATY42_RS13285	PWY-5686	UMP biosynthesis
ATY42_RS13335	PWY-1081	homogalacturonan degradation
ATY42_RS13335	PWY-7246	pectin degradation II
ATY42_RS13335	PWY-7248	pectin degradation III
ATY42_RS13365	PWY-181	photorespiration
ATY42_RS13370	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
ATY42_RS13370	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
ATY42_RS13370	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
ATY42_RS13370	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
ATY42_RS13370	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
ATY42_RS13370	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
ATY42_RS13370	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
ATY42_RS13370	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
ATY42_RS13370	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
ATY42_RS13370	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
ATY42_RS13405	PWY-6004	glycine betaine biosynthesis V (from glycine)
ATY42_RS13410	PWY-2301	<i>myo</i>-inositol biosynthesis
ATY42_RS13410	PWY-4702	phytate degradation I
ATY42_RS13410	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
ATY42_RS13415	PWY-6854	ethylene biosynthesis III (microbes)
ATY42_RS13450	PWY-6605	adenine and adenosine salvage II
ATY42_RS13450	PWY-6610	adenine and adenosine salvage IV
ATY42_RS13505	PWY-5676	acetyl-CoA fermentation to butanoate II
ATY42_RS13505	PWY-5741	ethylmalonyl-CoA pathway
ATY42_RS13505	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY42_RS13540	PWY-6938	NADH repair
ATY42_RS13545	PWY-6700	queuosine biosynthesis
ATY42_RS13680	PWY-3781	aerobic respiration I (cytochrome c)
ATY42_RS13680	PWY-6692	Fe(II) oxidation
ATY42_RS13680	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
ATY42_RS13680	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY42_RS13795	PWY-381	nitrate reduction II (assimilatory)
ATY42_RS13795	PWY-5675	nitrate reduction V (assimilatory)
ATY42_RS13795	PWY-6549	L-glutamine biosynthesis III
ATY42_RS13795	PWY-6963	ammonia assimilation cycle I
ATY42_RS13795	PWY-6964	ammonia assimilation cycle II
ATY42_RS13805	PWY-381	nitrate reduction II (assimilatory)
ATY42_RS13805	PWY-5675	nitrate reduction V (assimilatory)
ATY42_RS13805	PWY-6549	L-glutamine biosynthesis III
ATY42_RS13805	PWY-6963	ammonia assimilation cycle I
ATY42_RS13805	PWY-6964	ammonia assimilation cycle II
ATY42_RS13885	PWY-5022	4-aminobutanoate degradation V
ATY42_RS13885	PWY-6728	methylaspartate cycle
ATY42_RS13885	PWY-7126	ethylene biosynthesis IV
ATY42_RS14115	PWY-6854	ethylene biosynthesis III (microbes)
ATY42_RS14295	PWY-5747	2-methylcitrate cycle II
ATY42_RS14395	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_RS14395	PWY-5686	UMP biosynthesis
ATY42_RS14395	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_RS14405	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_RS14405	PWY-5686	UMP biosynthesis
ATY42_RS14405	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_RS14410	PWY-2941	L-lysine biosynthesis II
ATY42_RS14410	PWY-2942	L-lysine biosynthesis III
ATY42_RS14410	PWY-5097	L-lysine biosynthesis VI
ATY42_RS14515	PWY-4261	glycerol degradation I
ATY42_RS14545	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_RS14545	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY42_RS14545	PWY-7242	D-fructuronate degradation
ATY42_RS14545	PWY-7310	D-glucosaminate degradation
ATY42_RS14545	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
ATY42_RS14550	PWY-1042	glycolysis IV (plant cytosol)
ATY42_RS14550	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_RS14550	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_RS14550	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS14550	PWY-5723	Rubisco shunt
ATY42_RS14550	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS14550	PWY-6886	1-butanol autotrophic biosynthesis
ATY42_RS14550	PWY-6901	superpathway of glucose and xylose degradation
ATY42_RS14550	PWY-7003	glycerol degradation to butanol
ATY42_RS14550	PWY-7124	ethylene biosynthesis V (engineered)
ATY42_RS14550	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ATY42_RS14560	PWY-7130	L-glucose degradation
ATY42_RS14575	PWY-2941	L-lysine biosynthesis II
ATY42_RS14575	PWY-2942	L-lysine biosynthesis III
ATY42_RS14575	PWY-5097	L-lysine biosynthesis VI
ATY42_RS14605	PWY-6910	hydroxymethylpyrimidine salvage
ATY42_RS14605	PWY-7356	thiamin salvage IV (yeast)
ATY42_RS14605	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ATY42_RS14660	PWY-2681	<i>trans</i>-zeatin biosynthesis
ATY42_RS14730	PWY-2781	<i>cis</i>-zeatin biosynthesis
ATY42_RS14735	PWY-6614	tetrahydrofolate biosynthesis
ATY42_RS14775	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_RS14775	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ATY42_RS14775	PWY-6596	adenosine nucleotides degradation I
ATY42_RS14775	PWY-6606	guanosine nucleotides degradation II
ATY42_RS14775	PWY-6607	guanosine nucleotides degradation I
ATY42_RS14775	PWY-6608	guanosine nucleotides degradation III
ATY42_RS14775	PWY-7185	UTP and CTP dephosphorylation I
ATY42_RS14790	PWY-7560	methylerythritol phosphate pathway II
ATY42_RS14800	PWY-7560	methylerythritol phosphate pathway II
ATY42_RS14810	PWY-1042	glycolysis IV (plant cytosol)
ATY42_RS14810	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_RS14810	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_RS14810	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS14810	PWY-5723	Rubisco shunt
ATY42_RS14810	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS14810	PWY-6886	1-butanol autotrophic biosynthesis
ATY42_RS14810	PWY-6901	superpathway of glucose and xylose degradation
ATY42_RS14810	PWY-7003	glycerol degradation to butanol
ATY42_RS14810	PWY-7124	ethylene biosynthesis V (engineered)
ATY42_RS14810	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ATY42_RS14820	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY42_RS14820	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ATY42_RS14825	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
ATY42_RS14825	PWY-7177	UTP and CTP dephosphorylation II
ATY42_RS14825	PWY-7185	UTP and CTP dephosphorylation I
ATY42_RS14990	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
ATY42_RS14990	PWY-7688	ATY42_RS14990
ATY42_RS15395	PWY-7158	L-phenylalanine degradation V
ATY42_RS15475	PWY-6012	acyl carrier protein metabolism I
ATY42_RS15475	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
ATY42_RS15545	PWY-5194	siroheme biosynthesis
ATY42_RS15545	PWY-5441	S-methyl-L-methionine cycle
ATY42_RS15545	PWY-702	L-methionine biosynthesis II
ATY42_RS15545	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
ATY42_RS15575	PWY-6823	molybdenum cofactor biosynthesis
ATY42_RS15915	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
ATY42_RS15915	PWY-622	starch biosynthesis
ATY42_RS15960	PWY-6655	xanthan biosynthesis
ATY42_RS15960	PWY-6658	acetan biosynthesis
ATY42_RS16120	PWY-6854	ethylene biosynthesis III (microbes)
ATY42_RS16130	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY42_RS16130	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY42_RS16140	PWY-5316	nicotine biosynthesis
ATY42_RS16140	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_RS16140	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
ATY42_RS16140	PWY-7342	superpathway of nicotine biosynthesis
ATY42_RS16270	PWY-1042	glycolysis IV (plant cytosol)
ATY42_RS16270	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS16270	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS16270	PWY-7003	glycerol degradation to butanol
ATY42_RS16325	PWY-6749	CMP-legionaminate biosynthesis I
ATY42_RS16330	PWY-4381	fatty acid biosynthesis initiation I
ATY42_RS16330	PWY-5743	3-hydroxypropanoate cycle
ATY42_RS16330	PWY-5744	glyoxylate assimilation
ATY42_RS16330	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_RS16330	PWY-6679	jadomycin biosynthesis
ATY42_RS16330	PWY-6722	candicidin biosynthesis
ATY42_RS16330	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_RS16380	PWY-2941	L-lysine biosynthesis II
ATY42_RS16380	PWY-2942	L-lysine biosynthesis III
ATY42_RS16380	PWY-5097	L-lysine biosynthesis VI
ATY42_RS16380	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_RS16380	PWY-6559	spermidine biosynthesis II
ATY42_RS16380	PWY-6562	norspermidine biosynthesis
ATY42_RS16380	PWY-7153	grixazone biosynthesis
ATY42_RS16380	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_RS16390	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_RS16405	PWY-5669	phosphatidylethanolamine biosynthesis I
ATY42_RS16465	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_RS16545	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
ATY42_RS16545	PWY-5491	diethylphosphate degradation
ATY42_RS16640	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_RS16665	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_RS16665	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
ATY42_RS16880	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY42_RS16880	PWY-6892	thiazole biosynthesis I (E. coli)
ATY42_RS17005	PWY-5278	sulfite oxidation III
ATY42_RS17005	PWY-5340	sulfate activation for sulfonation
ATY42_RS17005	PWY-6683	sulfate reduction III (assimilatory)
ATY42_RS17005	PWY-6932	selenate reduction
ATY42_RS17010	PWY-5278	sulfite oxidation III
ATY42_RS17010	PWY-5340	sulfate activation for sulfonation
ATY42_RS17010	PWY-6683	sulfate reduction III (assimilatory)
ATY42_RS17010	PWY-6932	selenate reduction
ATY42_RS17015	PWY-6683	sulfate reduction III (assimilatory)
ATY42_RS17020	PWY-6683	sulfate reduction III (assimilatory)
ATY42_RS17075	PWY-5194	siroheme biosynthesis
ATY42_RS17075	PWY-5441	S-methyl-L-methionine cycle
ATY42_RS17075	PWY-702	L-methionine biosynthesis II
ATY42_RS17075	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
ATY42_RS17080	PWY-6936	seleno-amino acid biosynthesis
ATY42_RS17090	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_RS17100	PWY-1042	glycolysis IV (plant cytosol)
ATY42_RS17100	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_RS17100	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS17100	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS17100	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_RS17105	PWY-1042	glycolysis IV (plant cytosol)
ATY42_RS17105	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_RS17105	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS17105	PWY-5723	Rubisco shunt
ATY42_RS17105	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS17105	PWY-6886	1-butanol autotrophic biosynthesis
ATY42_RS17105	PWY-6901	superpathway of glucose and xylose degradation
ATY42_RS17105	PWY-7003	glycerol degradation to butanol
ATY42_RS17105	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ATY42_RS17105	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY42_RS17115	PWY-1042	glycolysis IV (plant cytosol)
ATY42_RS17115	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS17115	PWY-6886	1-butanol autotrophic biosynthesis
ATY42_RS17115	PWY-6901	superpathway of glucose and xylose degradation
ATY42_RS17115	PWY-7003	glycerol degradation to butanol
ATY42_RS18145	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
ATY42_RS18165	PWY-7560	methylerythritol phosphate pathway II
ATY42_RS18180	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_RS18225	PWY-7731	ATY42_RS18225
ATY42_RS18260	PWY-5057	L-valine degradation II
ATY42_RS18260	PWY-5076	L-leucine degradation III
ATY42_RS18260	PWY-5078	L-isoleucine degradation II
ATY42_RS18260	PWY-5101	L-isoleucine biosynthesis II
ATY42_RS18260	PWY-5103	L-isoleucine biosynthesis III
ATY42_RS18260	PWY-5104	L-isoleucine biosynthesis IV
ATY42_RS18260	PWY-5108	L-isoleucine biosynthesis V
ATY42_RS18400	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_RS18400	PWY-5723	Rubisco shunt
ATY42_RS18425	PWY-2582	brassinosteroid biosynthesis II
ATY42_RS18425	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ATY42_RS18425	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ATY42_RS18425	PWY-6948	sitosterol degradation to androstenedione
ATY42_RS18425	PWY-699	brassinosteroid biosynthesis I
ATY42_RS18425	PWY-7299	progesterone biosynthesis
ATY42_RS18515	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY42_RS18515	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY42_RS18515	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY42_RS18515	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ATY42_RS18530	PWY-2161	folate polyglutamylation
ATY42_RS18560	PWY-5515	L-arabinose degradation II
ATY42_RS18560	PWY-5525	D-glucuronate degradation I
ATY42_RS18560	PWY-7378	aminopropanol phosphate biosynthesis II
ATY42_RS18685	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_RS18750	PWY-5530	sorbitol biosynthesis II
ATY42_RS18845	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
ATY42_RS18845	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
ATY42_RS18845	PWY-6268	adenosylcobalamin salvage from cobalamin
ATY42_RS18845	PWY-6269	adenosylcobalamin salvage from cobinamide II
ATY42_RS18865	PWY-7294	xylose degradation IV
ATY42_RS18865	PWY-7295	L-arabinose degradation IV
ATY42_RS18890	PWY-3841	folate transformations II
ATY42_RS18890	PWY-6614	tetrahydrofolate biosynthesis
ATY42_RS18900	PWY-3841	folate transformations II
ATY42_RS18900	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_RS18900	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_RS18900	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY42_RS18900	PWY-7199	pyrimidine deoxyribonucleosides salvage
ATY42_RS18900	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY42_RS18925	PWY-7039	phosphatidate metabolism, as a signaling molecule
ATY42_RS19060	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ATY42_RS19060	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
ATY42_RS19100	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_RS19100	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY42_RS19100	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_RS19100	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS19100	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
ATY42_RS19100	PWY-6549	L-glutamine biosynthesis III
ATY42_RS19100	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY42_RS19100	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY42_RS19100	PWY-7124	ethylene biosynthesis V (engineered)
ATY42_RS19110	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ATY42_RS19180	PWY-2201	folate transformations I
ATY42_RS19180	PWY-3841	folate transformations II
ATY42_RS19200	PWY-6502	oxidized GTP and dGTP detoxification
ATY42_RS19200	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ATY42_RS19200	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ATY42_RS19200	PWY-6897	thiamin salvage II
ATY42_RS19200	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
ATY42_RS19200	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
ATY42_RS19200	PWY-7356	thiamin salvage IV (yeast)
ATY42_RS19200	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ATY42_RS19225	PWY-2201	folate transformations I
ATY42_RS19225	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY42_RS19245	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_RS19245	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_RS19250	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_RS19250	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_RS19255	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_RS19255	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY42_RS19255	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_RS19255	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_RS19265	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_RS19265	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_RS19265	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_RS19270	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_RS19270	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_RS19290	PWY-2201	folate transformations I
ATY42_RS19315	PWY-2201	folate transformations I
ATY42_RS19385	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ATY42_RS19385	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ATY42_RS19385	PWY-6896	thiamin salvage I
ATY42_RS19385	PWY-6897	thiamin salvage II
ATY42_RS19395	PWY-6167	flavin biosynthesis II (archaea)
ATY42_RS19395	PWY-6168	flavin biosynthesis III (fungi)
ATY42_RS19400	PWY-6167	flavin biosynthesis II (archaea)
ATY42_RS19400	PWY-6168	flavin biosynthesis III (fungi)
ATY42_RS19400	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY42_RS19405	PWY-6167	flavin biosynthesis II (archaea)
ATY42_RS19405	PWY-6168	flavin biosynthesis III (fungi)
ATY42_RS19405	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS19415	PWY-5525	D-glucuronate degradation I
ATY42_RS19435	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_RS19435	PWY-181	photorespiration
ATY42_RS19435	PWY-2161	folate polyglutamylation
ATY42_RS19435	PWY-2201	folate transformations I
ATY42_RS19435	PWY-3661	glycine betaine degradation I
ATY42_RS19435	PWY-3661-1	glycine betaine degradation II (mammalian)
ATY42_RS19435	PWY-3841	folate transformations II
ATY42_RS19435	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY42_RS19475	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY42_RS19480	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY42_RS19485	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY42_RS19485	PWY-3162	L-tryptophan degradation V (side chain pathway)
ATY42_RS19485	PWY-5057	L-valine degradation II
ATY42_RS19485	PWY-5076	L-leucine degradation III
ATY42_RS19485	PWY-5078	L-isoleucine degradation II
ATY42_RS19485	PWY-5079	L-phenylalanine degradation III
ATY42_RS19485	PWY-5082	L-methionine degradation III
ATY42_RS19485	PWY-5480	pyruvate fermentation to ethanol I
ATY42_RS19485	PWY-5486	pyruvate fermentation to ethanol II
ATY42_RS19485	PWY-5751	phenylethanol biosynthesis
ATY42_RS19485	PWY-6313	serotonin degradation
ATY42_RS19485	PWY-6333	acetaldehyde biosynthesis I
ATY42_RS19485	PWY-6342	noradrenaline and adrenaline degradation
ATY42_RS19485	PWY-6454	vancomycin resistance I
ATY42_RS19485	PWY-6587	pyruvate fermentation to ethanol III
ATY42_RS19485	PWY-6802	salidroside biosynthesis
ATY42_RS19485	PWY-6871	3-methylbutanol biosynthesis
ATY42_RS19485	PWY-6901	superpathway of glucose and xylose degradation
ATY42_RS19485	PWY-7013	L-1,2-propanediol degradation
ATY42_RS19485	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY42_RS19485	PWY-7118	chitin degradation to ethanol
ATY42_RS19485	PWY-7396	butanol and isobutanol biosynthesis (engineered)
ATY42_RS19540	PWY-6840	homoglutathione biosynthesis
ATY42_RS19540	PWY-7255	ergothioneine biosynthesis I (bacteria)
ATY42_RS19720	PWY-6906	chitin derivatives degradation
ATY42_RS19720	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
ATY42_RS19720	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
ATY42_RS19755	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY42_RS19790	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY42_RS19790	PWY-6148	tetrahydromethanopterin biosynthesis
ATY42_RS19790	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
ATY42_RS19790	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY42_RS19855	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_RS19875	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ATY42_RS19875	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ATY42_RS19880	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ATY42_RS19880	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ATY42_RS19895	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_RS19895	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_RS20015	PWY-5839	menaquinol-7 biosynthesis
ATY42_RS20015	PWY-5844	menaquinol-9 biosynthesis
ATY42_RS20015	PWY-5849	menaquinol-6 biosynthesis
ATY42_RS20015	PWY-5890	menaquinol-10 biosynthesis
ATY42_RS20015	PWY-5891	menaquinol-11 biosynthesis
ATY42_RS20015	PWY-5892	menaquinol-12 biosynthesis
ATY42_RS20015	PWY-5895	menaquinol-13 biosynthesis
ATY42_RS20065	PWY-2941	L-lysine biosynthesis II
ATY42_RS20065	PWY-5097	L-lysine biosynthesis VI
ATY42_RS20125	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_RS20125	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ATY42_RS20375	PWY-5958	acridone alkaloid biosynthesis
ATY42_RS20375	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ATY42_RS20375	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ATY42_RS20390	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_RS20390	PWY-5723	Rubisco shunt
ATY42_RS20565	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_RS20565	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ATY42_RS20625	PWY-6454	vancomycin resistance I
ATY42_RS20625	PWY-6455	vancomycin resistance II
ATY42_RS20640	PWY-1042	glycolysis IV (plant cytosol)
ATY42_RS20640	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_RS20640	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_RS20640	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS20640	PWY-5723	Rubisco shunt
ATY42_RS20640	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS20640	PWY-6886	1-butanol autotrophic biosynthesis
ATY42_RS20640	PWY-6901	superpathway of glucose and xylose degradation
ATY42_RS20640	PWY-7003	glycerol degradation to butanol
ATY42_RS20640	PWY-7124	ethylene biosynthesis V (engineered)
ATY42_RS20640	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ATY42_RS20760	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY42_RS20760	PWY-6148	tetrahydromethanopterin biosynthesis
ATY42_RS20760	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
ATY42_RS20760	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY42_RS20765	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
ATY42_RS20765	PWY-5368	dimorphecolate biosynthesis
ATY42_RS20765	PWY-5995	linoleate biosynthesis I (plants)
ATY42_RS20765	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
ATY42_RS20765	PWY-6803	phosphatidylcholine acyl editing
ATY42_RS20765	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
ATY42_RS20765	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
ATY42_RS20765	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
ATY42_RS20765	PWY-7470	phosphatidylcholine biosynthesis VII
ATY42_RS20765	PWY-7618	ricinoleate biosynthesis
ATY42_RS20860	PWY-3781	aerobic respiration I (cytochrome c)
ATY42_RS20860	PWY-4521	arsenite oxidation I (respiratory)
ATY42_RS20860	PWY-6692	Fe(II) oxidation
ATY42_RS20860	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY42_RS20875	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
ATY42_RS20875	PWY-6853	ethylene biosynthesis II (microbes)
ATY42_RS20875	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY42_RS20940	PWY-6834	spermidine biosynthesis III
ATY42_RS20975	PWY-5958	acridone alkaloid biosynthesis
ATY42_RS20975	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ATY42_RS20975	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ATY42_RS21000	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_RS21000	PWY-6549	L-glutamine biosynthesis III
ATY42_RS21000	PWY-6728	methylaspartate cycle
ATY42_RS21000	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_RS21000	PWY-7124	ethylene biosynthesis V (engineered)
ATY42_RS21000	PWY-7254	TCA cycle VII (acetate-producers)
ATY42_RS21000	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY42_RS21070	PWY-6700	queuosine biosynthesis
ATY42_RS21140	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY42_RS21140	PWY-5981	CDP-diacylglycerol biosynthesis III
ATY42_RS21180	PWY-6004	glycine betaine biosynthesis V (from glycine)
ATY42_RS21195	PWY-4381	fatty acid biosynthesis initiation I
ATY42_RS21270	PWY-5101	L-isoleucine biosynthesis II
ATY42_RS21270	PWY-5103	L-isoleucine biosynthesis III
ATY42_RS21270	PWY-5104	L-isoleucine biosynthesis IV
ATY42_RS21270	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY42_RS21305	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
ATY42_RS21305	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
ATY42_RS21335	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY42_RS21335	PWY-6892	thiazole biosynthesis I (E. coli)
ATY42_RS21335	PWY-7560	methylerythritol phosphate pathway II
ATY42_RS21505	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY42_RS21505	PWY-6164	3-dehydroquinate biosynthesis I
ATY42_RS21505	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ATY42_RS21605	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_RS21665	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY42_RS21665	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY42_RS21665	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY42_RS21665	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY42_RS21665	PWY-6113	superpathway of mycolate biosynthesis
ATY42_RS21665	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY42_RS21665	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_RS21665	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_RS21665	PWY-7663	gondoate biosynthesis (anaerobic)
ATY42_RS21665	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY42_RS21665	PWYG-321	mycolate biosynthesis
ATY42_RS21670	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY42_RS21670	PWY-5981	CDP-diacylglycerol biosynthesis III
ATY42_RS21670	PWY-6453	stigma estolide biosynthesis
ATY42_RS21670	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
ATY42_RS21670	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
ATY42_RS21670	PWY-7587	oleate biosynthesis III (cyanobacteria)
ATY42_RS21670	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
ATY42_RS21695	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_RS21695	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ATY42_RS21695	PWY-6596	adenosine nucleotides degradation I
ATY42_RS21695	PWY-6606	guanosine nucleotides degradation II
ATY42_RS21695	PWY-6607	guanosine nucleotides degradation I
ATY42_RS21695	PWY-6608	guanosine nucleotides degradation III
ATY42_RS21695	PWY-7185	UTP and CTP dephosphorylation I
ATY42_RS21730	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_RS21755	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ATY42_RS21755	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
ATY42_RS21755	PWY-6936	seleno-amino acid biosynthesis
ATY42_RS21755	PWY-702	L-methionine biosynthesis II
ATY42_RS21765	PWY-7723	ATY42_RS21765
ATY42_RS21785	PWY-2201	folate transformations I
ATY42_RS21785	PWY-3841	folate transformations II
ATY42_RS21805	PWY-2201	folate transformations I
ATY42_RS21805	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY42_RS21920	PWY-6832	2-aminoethylphosphonate degradation II
ATY42_RS21935	PWY-5691	urate degradation to allantoin I
ATY42_RS21935	PWY-7394	urate degradation to allantoin II
ATY42_RS21940	PWY-5691	urate degradation to allantoin I
ATY42_RS21940	PWY-7394	urate degradation to allantoin II
ATY42_RS21995	PWY-4381	fatty acid biosynthesis initiation I
ATY42_RS21995	PWY-5743	3-hydroxypropanoate cycle
ATY42_RS21995	PWY-5744	glyoxylate assimilation
ATY42_RS21995	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_RS21995	PWY-6679	jadomycin biosynthesis
ATY42_RS21995	PWY-6722	candicidin biosynthesis
ATY42_RS21995	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_RS22210	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY42_RS22215	PWY-1042	glycolysis IV (plant cytosol)
ATY42_RS22215	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_RS22215	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_RS22215	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS22215	PWY-5723	Rubisco shunt
ATY42_RS22215	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS22215	PWY-6886	1-butanol autotrophic biosynthesis
ATY42_RS22215	PWY-6901	superpathway of glucose and xylose degradation
ATY42_RS22215	PWY-7003	glycerol degradation to butanol
ATY42_RS22215	PWY-7124	ethylene biosynthesis V (engineered)
ATY42_RS22215	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ATY42_RS22230	PWY-6531	mannitol cycle
ATY42_RS22250	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
ATY42_RS22250	PWY-7248	pectin degradation III
ATY42_RS22255	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
ATY42_RS22260	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
ATY42_RS22520	PWY-6854	ethylene biosynthesis III (microbes)
ATY42_RS22525	PWY-6854	ethylene biosynthesis III (microbes)
ATY42_RS22550	PWY-381	nitrate reduction II (assimilatory)
ATY42_RS22550	PWY-5675	nitrate reduction V (assimilatory)
ATY42_RS22550	PWY-6549	L-glutamine biosynthesis III
ATY42_RS22550	PWY-6963	ammonia assimilation cycle I
ATY42_RS22550	PWY-6964	ammonia assimilation cycle II
ATY42_RS22555	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
ATY42_RS22650	PWY-7255	ergothioneine biosynthesis I (bacteria)
ATY42_RS22775	PWY-1042	glycolysis IV (plant cytosol)
ATY42_RS22775	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_RS22775	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_RS22775	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_RS22775	PWY-5723	Rubisco shunt
ATY42_RS22775	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_RS22775	PWY-6886	1-butanol autotrophic biosynthesis
ATY42_RS22775	PWY-6901	superpathway of glucose and xylose degradation
ATY42_RS22775	PWY-7003	glycerol degradation to butanol
ATY42_RS22775	PWY-7124	ethylene biosynthesis V (engineered)
ATY42_RS22775	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ATY42_RS22835	PWY-6672	<i>cis</i>-genanyl-CoA degradation
ATY42_RS22835	PWY-7118	chitin degradation to ethanol
ATY42_RS22875	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY42_RS22885	PWY-6012	acyl carrier protein metabolism I
ATY42_RS22885	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
ATY42_RS22945	PWY-7701	ATY42_RS22945
ATY42_RS23130	PWY-5663	tetrahydrobiopterin biosynthesis I
ATY42_RS23130	PWY-5664	tetrahydrobiopterin biosynthesis II
ATY42_RS23130	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY42_RS23130	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY42_RS23130	PWY-6983	tetrahydrobiopterin biosynthesis III
ATY42_RS23130	PWY-7442	drosopterin and aurodrosopterin biosynthesis
ATY42_RS23275	PWY-6348	phosphate acquisition
