ATY42_RS00005	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
ATY42_RS00010	SM00480	DNA polymerase III beta subunit
ATY42_RS00020	SM00387	Histidine kinase-like ATPases
ATY42_RS00020	SM00433	TopoisomeraseII
ATY42_RS00035	SM00028	Tetratricopeptide repeats
ATY42_RS00070	SM00155	Phospholipase D. Active site motifs.
ATY42_RS00190	SM01126	ATY42_RS00190
ATY42_RS00215	SM00487	DEAD-like helicases superfamily
ATY42_RS00215	SM00490	helicase superfamily c-terminal domain
ATY42_RS00285	SM01126	ATY42_RS00285
ATY42_RS00315	SM00642	Alpha-amylase domain
ATY42_RS00325	SM00642	Alpha-amylase domain
ATY42_RS00335	SM00642	Alpha-amylase domain
ATY42_RS00340	SM00642	Alpha-amylase domain
ATY42_RS00350	SM00267	diguanylate cyclase
ATY42_RS00435	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS00545	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY42_RS00570	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY42_RS00675	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS00695	SM01126	ATY42_RS00695
ATY42_RS00720	SM00487	DEAD-like helicases superfamily
ATY42_RS00720	SM00490	helicase superfamily c-terminal domain
ATY42_RS00795	SM01126	ATY42_RS00795
ATY42_RS00830	SM00354	helix_turn _helix lactose operon repressor
ATY42_RS00850	SM00642	Alpha-amylase domain
ATY42_RS00855	SM00642	Alpha-amylase domain
ATY42_RS00860	SM00642	Alpha-amylase domain
ATY42_RS00910	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS00920	SM00938	Nitrogen regulatory protein P-II
ATY42_RS00990	SM01228	ATY42_RS00990
ATY42_RS01055	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY42_RS01055	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS01090	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATY42_RS01110	SM00354	helix_turn _helix lactose operon repressor
ATY42_RS01120	SM00563	Phosphate acyltransferases
ATY42_RS01170	SM00344	helix_turn_helix ASNC type
ATY42_RS01225	SM00829	Enoylreductase
ATY42_RS01295	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY42_RS01295	SM00091	PAS domain
ATY42_RS01350	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATY42_RS01350	SM01232	ATY42_RS01350
ATY42_RS01355	SM01126	ATY42_RS01355
ATY42_RS01405	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS01420	SM01126	ATY42_RS01420
ATY42_RS01490	SM00564	beta-propeller repeat
ATY42_RS01530	SM00091	PAS domain
ATY42_RS01530	SM00387	Histidine kinase-like ATPases
ATY42_RS01530	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS01530	SM00448	cheY-homologous receiver domain
ATY42_RS01540	SM00346	helix_turn_helix isocitrate lyase regulation
ATY42_RS01560	SM01126	ATY42_RS01560
ATY42_RS01565	SM01321	ATY42_RS01565
ATY42_RS01585	SM00563	Phosphate acyltransferases
ATY42_RS01685	SM01126	ATY42_RS01685
ATY42_RS01725	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS01750	SM00530	Helix-turn-helix XRE-family like proteins 
ATY42_RS01760	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS01780	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY42_RS01825	SM01004	Delta-aminolevulinic acid dehydratase
ATY42_RS01845	SM00477	DNA/RNA non-specific endonuclease
ATY42_RS01845	SM00892	DNA/RNA non-specific endonuclease
ATY42_RS01875	SM00491	ATY42_RS01875
ATY42_RS01885	SM01126	ATY42_RS01885
ATY42_RS01900	SM01060	ATY42_RS01900
ATY42_RS01905	SM00248	ankyrin repeats
ATY42_RS01930	SM00448	cheY-homologous receiver domain
ATY42_RS01930	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS01935	SM00387	Histidine kinase-like ATPases
ATY42_RS01935	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS02025	SM00849	Metallo-beta-lactamase superfamily
ATY42_RS02075	SM01060	ATY42_RS02075
ATY42_RS02120	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY42_RS02120	SM00876	Biotin and Thiamin Synthesis associated domain
ATY42_RS02135	SM00822	ATY42_RS02135
ATY42_RS02160	SM00825	Beta-ketoacyl synthase
ATY42_RS02170	SM00248	ankyrin repeats
ATY42_RS02175	SM00226	Low molecular weight phosphatase family
ATY42_RS02200	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY42_RS02200	SM00924	MgtE intracellular N domain
ATY42_RS02210	SM00881	CoA binding domain
ATY42_RS02280	SM00998	Adenylosuccinate lyase C-terminus
ATY42_RS02300	SM00346	helix_turn_helix isocitrate lyase regulation
ATY42_RS02305	SM00090	RIO-like kinase
ATY42_RS02330	SM00836	DALR anticodon binding domain
ATY42_RS02330	SM01016	Arginyl tRNA synthetase N terminal dom
ATY42_RS02360	SM01259	ATY42_RS02360
ATY42_RS02380	SM00470	ParB-like nuclease domain
ATY42_RS02465	SM00073	Histidine Phosphotransfer domain
ATY42_RS02465	SM00387	Histidine kinase-like ATPases
ATY42_RS02465	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS02465	SM00448	cheY-homologous receiver domain
ATY42_RS02470	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS02470	SM00267	diguanylate cyclase
ATY42_RS02470	SM00448	cheY-homologous receiver domain
ATY42_RS02540	SM00563	Phosphate acyltransferases
ATY42_RS02570	SM01209	ATY42_RS02570
ATY42_RS02570	SM01210	ATY42_RS02570
ATY42_RS02580	SM00798	AICARFT/IMPCHase bienzyme
ATY42_RS02580	SM00851	MGS-like domain
ATY42_RS02610	SM01126	ATY42_RS02610
ATY42_RS02625	SM00530	Helix-turn-helix XRE-family like proteins 
ATY42_RS02655	SM00878	Biotin carboxylase C-terminal domain
ATY42_RS02690	SM01126	ATY42_RS02690
ATY42_RS02710	SM00487	DEAD-like helicases superfamily
ATY42_RS02710	SM00490	helicase superfamily c-terminal domain
ATY42_RS02770	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ATY42_RS02770	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ATY42_RS02770	SM00493	ATY42_RS02770
ATY42_RS02795	SM00257	Lysin motif
ATY42_RS03000	SM01126	ATY42_RS03000
ATY42_RS03015	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS03090	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS03090	SM00448	cheY-homologous receiver domain
ATY42_RS03100	SM00448	cheY-homologous receiver domain
ATY42_RS03105	SM00138	Methyltransferase, chemotaxis proteins 
ATY42_RS03125	SM00387	Histidine kinase-like ATPases
ATY42_RS03130	SM00448	cheY-homologous receiver domain
ATY42_RS03135	SM00850	LytTr DNA-binding domain
ATY42_RS03205	SM00986	Uracil DNA glycosylase superfamily
ATY42_RS03205	SM00987	UreE urease accessory protein, C-terminal domain 
ATY42_RS03215	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATY42_RS03235	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS03270	SM00387	Histidine kinase-like ATPases
ATY42_RS03270	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS03275	SM00448	cheY-homologous receiver domain
ATY42_RS03275	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS03320	SM00344	helix_turn_helix ASNC type
ATY42_RS03330	SM01005	Alanine racemase, C-terminal domain
ATY42_RS03350	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY42_RS03350	SM00091	PAS domain
ATY42_RS03350	SM00387	Histidine kinase-like ATPases
ATY42_RS03350	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS03350	SM00448	cheY-homologous receiver domain
ATY42_RS03435	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS03435	SM00930	ATY42_RS03435
ATY42_RS03460	SM00986	Uracil DNA glycosylase superfamily
ATY42_RS03460	SM00987	UreE urease accessory protein, C-terminal domain 
ATY42_RS03530	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS03540	SM00830	Chorismate mutase type II
ATY42_RS03565	SM01126	ATY42_RS03565
ATY42_RS03665	SM00825	Beta-ketoacyl synthase
ATY42_RS03690	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY42_RS03715	SM00487	DEAD-like helicases superfamily
ATY42_RS03715	SM00490	helicase superfamily c-terminal domain
ATY42_RS03750	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY42_RS03805	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS03815	SM00893	Electron transfer flavoprotein domain
ATY42_RS03820	SM00893	Electron transfer flavoprotein domain
ATY42_RS03855	SM00882	Coenzyme A transferase
ATY42_RS03860	SM00882	Coenzyme A transferase
ATY42_RS03890	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS03905	SM00528	Domain in histone-like proteins of HNS family
ATY42_RS03960	SM00656	ATY42_RS03960
ATY42_RS04045	SM01211	ATY42_RS04045
ATY42_RS04070	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS04140	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY42_RS04140	SM00866	ATY42_RS04140
ATY42_RS04210	SM00487	DEAD-like helicases superfamily
ATY42_RS04215	SM01126	ATY42_RS04215
ATY42_RS04245	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ATY42_RS04250	SM00822	ATY42_RS04250
ATY42_RS04260	SM00825	Beta-ketoacyl synthase
ATY42_RS04295	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS04385	SM00271	DnaJ molecular chaperone homology domain
ATY42_RS04390	SM00448	cheY-homologous receiver domain
ATY42_RS04395	SM00244	prohibitin homologues
ATY42_RS04400	SM00244	prohibitin homologues
ATY42_RS04410	SM00788	Adenylosuccinate synthetase
ATY42_RS04520	SM01329	ATY42_RS04520
ATY42_RS04525	SM00917	LeuA allosteric (dimerisation) domain
ATY42_RS04560	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS04565	SM00342	helix_turn_helix, arabinose operon control protein
ATY42_RS04600	SM01126	ATY42_RS04600
ATY42_RS04630	SM00464	Found in ATP-dependent protease La (LON)
ATY42_RS04665	SM00838	Elongation factor G C-terminus
ATY42_RS04745	SM01126	ATY42_RS04745
ATY42_RS04800	SM01126	ATY42_RS04800
ATY42_RS04880	SM01126	ATY42_RS04880
ATY42_RS04885	SM01329	ATY42_RS04885
ATY42_RS04950	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS04950	SM00994	ClpX C4-type zinc finger
ATY42_RS04950	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY42_RS04955	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS04955	SM00464	Found in ATP-dependent protease La (LON)
ATY42_RS04960	SM00411	bacterial (prokaryotic) histone like domain
ATY42_RS04985	SM00257	Lysin motif
ATY42_RS04990	SM00849	Metallo-beta-lactamase superfamily
ATY42_RS05005	SM00479	ATY42_RS05005
ATY42_RS05015	SM00331	Sigma factor PP2C-like phosphatases
ATY42_RS05015	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY42_RS05075	SM01126	ATY42_RS05075
ATY42_RS05100	SM00849	Metallo-beta-lactamase superfamily
ATY42_RS05105	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY42_RS05140	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS05150	SM00493	ATY42_RS05150
ATY42_RS05165	SM00460	Transglutaminase/protease-like homologues
ATY42_RS05175	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS05245	SM00506	Appr-1"-p processing enzyme
ATY42_RS05260	SM00450	Rhodanese Homology Domain
ATY42_RS05295	SM01154	ATY42_RS05295
ATY42_RS05305	SM00642	Alpha-amylase domain
ATY42_RS05325	SM00354	helix_turn _helix lactose operon repressor
ATY42_RS05330	SM00822	ATY42_RS05330
ATY42_RS05345	SM00448	cheY-homologous receiver domain
ATY42_RS05345	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS05350	SM00387	Histidine kinase-like ATPases
ATY42_RS05350	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS05360	SM00421	helix_turn_helix, Lux Regulon
ATY42_RS05360	SM00448	cheY-homologous receiver domain
ATY42_RS05400	SM00387	Histidine kinase-like ATPases
ATY42_RS05400	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS05400	SM00448	cheY-homologous receiver domain
ATY42_RS05420	SM00919	Malic enzyme, NAD binding domain
ATY42_RS05420	SM01274	ATY42_RS05420
ATY42_RS05515	SM01011	Aminopeptidase P, N-terminal domain
ATY42_RS05555	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY42_RS05580	SM00072	Guanylate kinase homologues.
ATY42_RS05595	SM01409	ATY42_RS05595
ATY42_RS05600	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY42_RS05600	SM00954	Region found in RelA / SpoT proteins
ATY42_RS05610	SM00487	DEAD-like helicases superfamily
ATY42_RS05610	SM00490	helicase superfamily c-terminal domain
ATY42_RS05665	SM00965	Secretin and TonB N terminus short domain
ATY42_RS05700	SM00327	von Willebrand factor (vWF) type A domain
ATY42_RS05705	SM00028	Tetratricopeptide repeats
ATY42_RS05705	SM00327	von Willebrand factor (vWF) type A domain
ATY42_RS05730	SM00861	Transketolase, pyrimidine binding domain
ATY42_RS05790	SM00448	cheY-homologous receiver domain
ATY42_RS05790	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS05795	SM00387	Histidine kinase-like ATPases
ATY42_RS05795	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS05815	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS05830	SM00849	Metallo-beta-lactamase superfamily
ATY42_RS05865	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATY42_RS05880	SM01126	ATY42_RS05880
ATY42_RS05885	SM00387	Histidine kinase-like ATPases
ATY42_RS05885	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS05890	SM00448	cheY-homologous receiver domain
ATY42_RS05890	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS06160	SM00422	helix_turn_helix, mercury resistance
ATY42_RS06185	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY42_RS06195	SM00849	Metallo-beta-lactamase superfamily
ATY42_RS06220	SM00421	helix_turn_helix, Lux Regulon
ATY42_RS06260	SM00924	MgtE intracellular N domain
ATY42_RS06305	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS06325	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY42_RS06465	SM00813	Alpha-L-arabinofuranosidase C-terminus
ATY42_RS06485	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS06485	SM00962	SRP54-type protein, GTPase domain
ATY42_RS06485	SM00963	SRP54-type protein, helical bundle domain
ATY42_RS06540	SM00363	S4 RNA-binding domain
ATY42_RS06565	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS06565	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY42_RS06640	SM00855	Phosphoglycerate mutase family
ATY42_RS06730	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS06775	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS06780	SM00342	helix_turn_helix, arabinose operon control protein
ATY42_RS06840	SM01126	ATY42_RS06840
ATY42_RS06880	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS06895	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
ATY42_RS06935	SM00411	bacterial (prokaryotic) histone like domain
ATY42_RS06960	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS07005	SM00732	Likely ribonuclease with RNase H fold.
ATY42_RS07085	SM00267	diguanylate cyclase
ATY42_RS07090	SM00829	Enoylreductase
ATY42_RS07105	SM01126	ATY42_RS07105
ATY42_RS07220	SM00855	Phosphoglycerate mutase family
ATY42_RS07245	SM00448	cheY-homologous receiver domain
ATY42_RS07250	SM00138	Methyltransferase, chemotaxis proteins 
ATY42_RS07255	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS07255	SM00448	cheY-homologous receiver domain
ATY42_RS07260	SM00260	Two component signalling adaptor domain
ATY42_RS07265	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY42_RS07265	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS07270	SM00073	Histidine Phosphotransfer domain
ATY42_RS07270	SM00260	Two component signalling adaptor domain
ATY42_RS07270	SM00387	Histidine kinase-like ATPases
ATY42_RS07270	SM01231	ATY42_RS07270
ATY42_RS07280	SM00487	DEAD-like helicases superfamily
ATY42_RS07280	SM00490	helicase superfamily c-terminal domain
ATY42_RS07280	SM00982	ATY42_RS07280
ATY42_RS07280	SM01058	CarD-like/TRCF domain
ATY42_RS07300	SM00387	Histidine kinase-like ATPases
ATY42_RS07300	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS07315	SM00645	Papain family cysteine protease
ATY42_RS07335	SM00645	Papain family cysteine protease
ATY42_RS07355	SM00645	Papain family cysteine protease
ATY42_RS07415	SM00357	Cold shock protein domain
ATY42_RS07545	SM00829	Enoylreductase
ATY42_RS07565	SM00342	helix_turn_helix, arabinose operon control protein
ATY42_RS07565	SM00478	endonuclease III
ATY42_RS07565	SM01009	AlkA N-terminal domain
ATY42_RS07615	SM00487	DEAD-like helicases superfamily
ATY42_RS07615	SM00490	helicase superfamily c-terminal domain
ATY42_RS07620	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS07620	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY42_RS07620	SM00091	PAS domain
ATY42_RS07620	SM00267	diguanylate cyclase
ATY42_RS07625	SM00363	S4 RNA-binding domain
ATY42_RS07660	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS07660	SM00387	Histidine kinase-like ATPases
ATY42_RS07660	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS07665	SM00448	cheY-homologous receiver domain
ATY42_RS07665	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS07695	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS07810	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS07810	SM00448	cheY-homologous receiver domain
ATY42_RS07815	SM00387	Histidine kinase-like ATPases
ATY42_RS07815	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS07825	SM00881	CoA binding domain
ATY42_RS07995	SM00904	Riboflavin kinase
ATY42_RS08040	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY42_RS08100	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ATY42_RS08100	SM00534	ATPase domain of DNA mismatch repair MUTS family
ATY42_RS08125	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS08165	SM00834	Putative regulatory protein
ATY42_RS08200	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY42_RS08210	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS08335	SM00341	Helicase and RNase D C-terminal
ATY42_RS08335	SM00487	DEAD-like helicases superfamily
ATY42_RS08335	SM00490	helicase superfamily c-terminal domain
ATY42_RS08335	SM00956	ATY42_RS08335
ATY42_RS08345	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS08345	SM00487	DEAD-like helicases superfamily
ATY42_RS08345	SM00490	helicase superfamily c-terminal domain
ATY42_RS08345	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY42_RS08410	SM00954	Region found in RelA / SpoT proteins
ATY42_RS08435	SM00491	ATY42_RS08435
ATY42_RS08460	SM00448	cheY-homologous receiver domain
ATY42_RS08465	SM00448	cheY-homologous receiver domain
ATY42_RS08470	SM00260	Two component signalling adaptor domain
ATY42_RS08475	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY42_RS08480	SM00073	Histidine Phosphotransfer domain
ATY42_RS08480	SM00260	Two component signalling adaptor domain
ATY42_RS08480	SM00387	Histidine kinase-like ATPases
ATY42_RS08480	SM00448	cheY-homologous receiver domain
ATY42_RS08480	SM01231	ATY42_RS08480
ATY42_RS08490	SM00260	Two component signalling adaptor domain
ATY42_RS08510	SM00327	von Willebrand factor (vWF) type A domain
ATY42_RS08535	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY42_RS08590	SM01149	ATY42_RS08590
ATY42_RS08640	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS08645	SM00758	ATY42_RS08645
ATY42_RS08645	SM01217	ATY42_RS08645
ATY42_RS08665	SM00636	ATY42_RS08665
ATY42_RS08670	SM00812	Alpha-L-fucosidase
ATY42_RS08720	SM00244	prohibitin homologues
ATY42_RS08800	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY42_RS08850	SM00867	YceI-like domain 
ATY42_RS08860	SM00867	YceI-like domain 
ATY42_RS08865	SM00387	Histidine kinase-like ATPases
ATY42_RS08865	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS08865	SM00448	cheY-homologous receiver domain
ATY42_RS08870	SM00387	Histidine kinase-like ATPases
ATY42_RS08870	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS08870	SM00448	cheY-homologous receiver domain
ATY42_RS08875	SM00387	Histidine kinase-like ATPases
ATY42_RS08875	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS08875	SM00448	cheY-homologous receiver domain
ATY42_RS08895	SM00812	Alpha-L-fucosidase
ATY42_RS08920	SM00530	Helix-turn-helix XRE-family like proteins 
ATY42_RS08970	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY42_RS08975	SM00838	Elongation factor G C-terminus
ATY42_RS08990	SM00358	Double-stranded RNA binding motif
ATY42_RS08990	SM00535	Ribonuclease III family
ATY42_RS09005	SM00448	cheY-homologous receiver domain
ATY42_RS09015	SM01118	ATY42_RS09015
ATY42_RS09060	SM00357	Cold shock protein domain
ATY42_RS09085	SM00487	DEAD-like helicases superfamily
ATY42_RS09085	SM00490	helicase superfamily c-terminal domain
ATY42_RS09115	SM00267	diguanylate cyclase
ATY42_RS09135	SM00869	Autotransporter beta-domain
ATY42_RS09140	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATY42_RS09510	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS09530	SM00481	DNA polymerase alpha chain like domain
ATY42_RS09565	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY42_RS09620	SM00972	Spore Coat Protein U domain
ATY42_RS09635	SM00972	Spore Coat Protein U domain
ATY42_RS09645	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY42_RS09675	SM01172	ATY42_RS09675
ATY42_RS09680	SM00710	Parallel beta-helix repeats
ATY42_RS09680	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
ATY42_RS09705	SM00434	DNA Topoisomerase IV
ATY42_RS09715	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY42_RS09760	SM01126	ATY42_RS09760
ATY42_RS09785	SM00861	Transketolase, pyrimidine binding domain
ATY42_RS09790	SM00507	HNH nucleases
ATY42_RS09860	SM00271	DnaJ molecular chaperone homology domain
ATY42_RS09895	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS09920	SM00861	Transketolase, pyrimidine binding domain
ATY42_RS09930	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY42_RS09935	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY42_RS10020	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS10025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY42_RS10040	SM00984	UDP binding domain
ATY42_RS10060	SM00354	helix_turn _helix lactose operon repressor
ATY42_RS10080	SM01018	B12 binding domain
ATY42_RS10090	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATY42_RS10120	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY42_RS10120	SM00357	Cold shock protein domain
ATY42_RS10120	SM00955	ATY42_RS10120
ATY42_RS10145	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY42_RS10165	SM01126	ATY42_RS10165
ATY42_RS10220	SM01126	ATY42_RS10220
ATY42_RS10240	SM01126	ATY42_RS10240
ATY42_RS10400	SM01007	Class II Aldolase and Adducin N-terminal domain
ATY42_RS10485	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS10500	SM01126	ATY42_RS10500
ATY42_RS10515	SM00363	S4 RNA-binding domain
ATY42_RS10540	SM00354	helix_turn _helix lactose operon repressor
ATY42_RS10620	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY42_RS10625	SM00411	bacterial (prokaryotic) histone like domain
ATY42_RS10645	SM00822	ATY42_RS10645
ATY42_RS10695	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY42_RS10695	SM01240	ATY42_RS10695
ATY42_RS10760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS10770	SM00529	Helix-turn-helix diphteria tox regulatory element
ATY42_RS10780	SM00479	ATY42_RS10780
ATY42_RS10865	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY42_RS10865	SM00732	Likely ribonuclease with RNase H fold.
ATY42_RS10880	SM00448	cheY-homologous receiver domain
ATY42_RS10885	SM00387	Histidine kinase-like ATPases
ATY42_RS10895	SM00014	Acid phosphatase homologues
ATY42_RS10995	SM00419	helix_turn_helix, cAMP Regulatory protein
ATY42_RS11305	SM01126	ATY42_RS11305
ATY42_RS11350	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY42_RS11350	SM00465	GIY-YIG type nucleases (URI domain)
ATY42_RS11360	SM00226	Low molecular weight phosphatase family
ATY42_RS11375	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS11390	SM00849	Metallo-beta-lactamase superfamily
ATY42_RS11395	SM01126	ATY42_RS11395
ATY42_RS11405	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS11460	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS11515	SM00448	cheY-homologous receiver domain
ATY42_RS11520	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY42_RS11520	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY42_RS11520	SM00091	PAS domain
ATY42_RS11520	SM00387	Histidine kinase-like ATPases
ATY42_RS11520	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS11520	SM00448	cheY-homologous receiver domain
ATY42_RS11550	SM00267	diguanylate cyclase
ATY42_RS11600	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS11645	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY42_RS11675	SM00631	ATY42_RS11675
ATY42_RS11680	SM01217	ATY42_RS11680
ATY42_RS11695	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS11695	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY42_RS11695	SM00267	diguanylate cyclase
ATY42_RS11770	SM00646	ATY42_RS11770
ATY42_RS11800	SM00869	Autotransporter beta-domain
ATY42_RS11820	SM00387	Histidine kinase-like ATPases
ATY42_RS11820	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS11825	SM00421	helix_turn_helix, Lux Regulon
ATY42_RS11825	SM00448	cheY-homologous receiver domain
ATY42_RS11830	SM00869	Autotransporter beta-domain
ATY42_RS11850	SM00830	Chorismate mutase type II
ATY42_RS11870	SM00240	Forkhead associated domain
ATY42_RS11890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY42_RS11890	SM00866	ATY42_RS11890
ATY42_RS11940	SM00434	DNA Topoisomerase IV
ATY42_RS11965	SM00292	breast cancer carboxy-terminal domain
ATY42_RS11965	SM00532	Ligase N family
ATY42_RS11975	SM00771	ZipA, C-terminal domain (FtsZ-binding)
ATY42_RS11980	SM00968	SMC proteins Flexible Hinge Domain
ATY42_RS12035	SM00947	Carbonic anhydrase
ATY42_RS12060	SM00479	ATY42_RS12060
ATY42_RS12095	SM00981	ATY42_RS12095
ATY42_RS12115	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS12135	SM00644	ATY42_RS12135
ATY42_RS12145	SM00450	Rhodanese Homology Domain
ATY42_RS12170	SM00478	endonuclease III
ATY42_RS12180	SM00947	Carbonic anhydrase
ATY42_RS12235	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS12250	SM00479	ATY42_RS12250
ATY42_RS12305	SM01323	ATY42_RS12305
ATY42_RS12320	SM00344	helix_turn_helix ASNC type
ATY42_RS12430	SM00387	Histidine kinase-like ATPases
ATY42_RS12450	SM00450	Rhodanese Homology Domain
ATY42_RS12460	SM01126	ATY42_RS12460
ATY42_RS12530	SM00852	Probable molybdopterin binding domain
ATY42_RS12535	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS12540	SM00564	beta-propeller repeat
ATY42_RS12555	SM00028	Tetratricopeptide repeats
ATY42_RS12565	SM00562	ATY42_RS12565
ATY42_RS12605	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS12625	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS12625	SM00843	ATY42_RS12625
ATY42_RS12655	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY42_RS12660	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS12660	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY42_RS12685	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY42_RS12700	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS12700	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY42_RS12700	SM00091	PAS domain
ATY42_RS12700	SM00267	diguanylate cyclase
ATY42_RS12705	SM00091	PAS domain
ATY42_RS12705	SM00387	Histidine kinase-like ATPases
ATY42_RS12710	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS12710	SM00267	diguanylate cyclase
ATY42_RS12710	SM00448	cheY-homologous receiver domain
ATY42_RS12715	SM00387	Histidine kinase-like ATPases
ATY42_RS12730	SM00858	ATY42_RS12730
ATY42_RS12735	SM00260	Two component signalling adaptor domain
ATY42_RS12735	SM00448	cheY-homologous receiver domain
ATY42_RS12780	SM00047	Lysozyme subfamily 2
ATY42_RS12820	SM00421	helix_turn_helix, Lux Regulon
ATY42_RS12820	SM00448	cheY-homologous receiver domain
ATY42_RS12830	SM00448	cheY-homologous receiver domain
ATY42_RS12835	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS12855	SM00822	ATY42_RS12855
ATY42_RS12860	SM00822	ATY42_RS12860
ATY42_RS12910	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS12960	SM00267	diguanylate cyclase
ATY42_RS12965	SM00267	diguanylate cyclase
ATY42_RS12970	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS12970	SM00267	diguanylate cyclase
ATY42_RS12985	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS12985	SM00962	SRP54-type protein, GTPase domain
ATY42_RS13000	SM00448	cheY-homologous receiver domain
ATY42_RS13010	SM00073	Histidine Phosphotransfer domain
ATY42_RS13010	SM00260	Two component signalling adaptor domain
ATY42_RS13010	SM00387	Histidine kinase-like ATPases
ATY42_RS13010	SM01231	ATY42_RS13010
ATY42_RS13125	SM01126	ATY42_RS13125
ATY42_RS13140	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS13145	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS13180	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
ATY42_RS13190	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ATY42_RS13210	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY42_RS13250	SM00840	ATY42_RS13250
ATY42_RS13265	SM00245	tail specific protease
ATY42_RS13280	SM01234	ATY42_RS13280
ATY42_RS13385	SM00841	Elongation factor P, C-terminal
ATY42_RS13385	SM01185	ATY42_RS13385
ATY42_RS13395	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS13395	SM00267	diguanylate cyclase
ATY42_RS13395	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS13440	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS13445	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS13445	SM00487	DEAD-like helicases superfamily
ATY42_RS13445	SM00490	helicase superfamily c-terminal domain
ATY42_RS13470	SM00357	Cold shock protein domain
ATY42_RS13480	SM01322	ATY42_RS13480
ATY42_RS13490	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS13490	SM00267	diguanylate cyclase
ATY42_RS13505	SM00822	ATY42_RS13505
ATY42_RS13525	SM00853	MutL C terminal dimerisation domain
ATY42_RS13525	SM01340	ATY42_RS13525
ATY42_RS13530	SM00646	ATY42_RS13530
ATY42_RS13585	SM00474	3'-5' exonuclease
ATY42_RS13600	SM00528	Domain in histone-like proteins of HNS family
ATY42_RS13635	SM01126	ATY42_RS13635
ATY42_RS13710	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY42_RS13735	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY42_RS13735	SM01091	Transporter associated domain
ATY42_RS13770	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS13795	SM01230	ATY42_RS13795
ATY42_RS13805	SM01230	ATY42_RS13805
ATY42_RS13815	SM00267	diguanylate cyclase
ATY42_RS13815	SM00448	cheY-homologous receiver domain
ATY42_RS13870	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY42_RS13870	SM00091	PAS domain
ATY42_RS13870	SM00387	Histidine kinase-like ATPases
ATY42_RS13870	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS13870	SM00448	cheY-homologous receiver domain
ATY42_RS13870	SM01079	ATY42_RS13870
ATY42_RS13875	SM00448	cheY-homologous receiver domain
ATY42_RS13875	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY42_RS13910	SM01126	ATY42_RS13910
ATY42_RS13920	SM00354	helix_turn _helix lactose operon repressor
ATY42_RS14150	SM00260	Two component signalling adaptor domain
ATY42_RS14160	SM00448	cheY-homologous receiver domain
ATY42_RS14165	SM00073	Histidine Phosphotransfer domain
ATY42_RS14165	SM00260	Two component signalling adaptor domain
ATY42_RS14165	SM00387	Histidine kinase-like ATPases
ATY42_RS14165	SM01231	ATY42_RS14165
ATY42_RS14190	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY42_RS14195	SM01126	ATY42_RS14195
ATY42_RS14200	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY42_RS14200	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS14210	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY42_RS14210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS14215	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY42_RS14215	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS14220	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY42_RS14220	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS14225	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY42_RS14225	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS14240	SM00260	Two component signalling adaptor domain
ATY42_RS14260	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY42_RS14260	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS14265	SM00138	Methyltransferase, chemotaxis proteins 
ATY42_RS14275	SM00448	cheY-homologous receiver domain
ATY42_RS14280	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS14280	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY42_RS14280	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY42_RS14280	SM00091	PAS domain
ATY42_RS14280	SM00267	diguanylate cyclase
ATY42_RS14305	SM00966	SpoVT / AbrB like domain 
ATY42_RS14330	SM00073	Histidine Phosphotransfer domain
ATY42_RS14330	SM00387	Histidine kinase-like ATPases
ATY42_RS14330	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS14330	SM00448	cheY-homologous receiver domain
ATY42_RS14340	SM00448	cheY-homologous receiver domain
ATY42_RS14340	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY42_RS14350	SM00937	ATY42_RS14350
ATY42_RS14355	SM00850	LytTr DNA-binding domain
ATY42_RS14395	SM00851	MGS-like domain
ATY42_RS14395	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATY42_RS14405	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ATY42_RS14455	SM00899	ATY42_RS14455
ATY42_RS14475	SM00822	ATY42_RS14475
ATY42_RS14480	SM00841	Elongation factor P, C-terminal
ATY42_RS14480	SM01185	ATY42_RS14480
ATY42_RS14530	SM00758	ATY42_RS14530
ATY42_RS14550	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY42_RS14575	SM01130	ATY42_RS14575
ATY42_RS14595	SM00670	Large family of predicted nucleotide-binding domains
ATY42_RS14690	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY42_RS14700	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS14740	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS14750	SM01103	ATY42_RS14750
ATY42_RS14760	SM00257	Lysin motif
ATY42_RS14780	SM00463	Small MutS-related domain
ATY42_RS14810	SM01192	ATY42_RS14810
ATY42_RS14810	SM01193	ATY42_RS14810
ATY42_RS14835	SM00387	Histidine kinase-like ATPases
ATY42_RS14835	SM00433	TopoisomeraseII
ATY42_RS14865	SM01091	Transporter associated domain
ATY42_RS14900	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS14910	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY42_RS15185	SM00448	cheY-homologous receiver domain
ATY42_RS15185	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS15195	SM00387	Histidine kinase-like ATPases
ATY42_RS15235	SM00331	Sigma factor PP2C-like phosphatases
ATY42_RS15235	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY42_RS15260	SM00240	Forkhead associated domain
ATY42_RS15290	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS15290	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY42_RS15415	SM00363	S4 RNA-binding domain
ATY42_RS15420	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY42_RS15435	SM00421	helix_turn_helix, Lux Regulon
ATY42_RS15435	SM00448	cheY-homologous receiver domain
ATY42_RS15440	SM00450	Rhodanese Homology Domain
ATY42_RS15465	SM00984	UDP binding domain
ATY42_RS15515	SM01126	ATY42_RS15515
ATY42_RS15525	SM01126	ATY42_RS15525
ATY42_RS15535	SM01012	ATY42_RS15535
ATY42_RS15575	SM00852	Probable molybdopterin binding domain
ATY42_RS15675	SM00944	Pro-kumamolisin, activation domain
ATY42_RS15740	SM01130	ATY42_RS15740
ATY42_RS15765	SM00342	helix_turn_helix, arabinose operon control protein
ATY42_RS15770	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS15770	SM00962	SRP54-type protein, GTPase domain
ATY42_RS15770	SM00963	SRP54-type protein, helical bundle domain
ATY42_RS15785	SM00478	endonuclease III
ATY42_RS15795	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY42_RS15795	SM00091	PAS domain
ATY42_RS15795	SM00387	Histidine kinase-like ATPases
ATY42_RS15795	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS15795	SM00448	cheY-homologous receiver domain
ATY42_RS15830	SM01126	ATY42_RS15830
ATY42_RS15980	SM00422	helix_turn_helix, mercury resistance
ATY42_RS15985	SM00411	bacterial (prokaryotic) histone like domain
ATY42_RS15990	SM00873	B3/4 domain
ATY42_RS15990	SM00874	tRNA synthetase B5 domain
ATY42_RS15990	SM00896	Ferredoxin-fold anticodon binding domain
ATY42_RS16015	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY42_RS16045	SM00487	DEAD-like helicases superfamily
ATY42_RS16045	SM00490	helicase superfamily c-terminal domain
ATY42_RS16130	SM01001	AIR carboxylase
ATY42_RS16150	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY42_RS16150	SM00322	K homology RNA-binding domain
ATY42_RS16155	SM01387	ATY42_RS16155
ATY42_RS16175	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY42_RS16175	SM00322	K homology RNA-binding domain
ATY42_RS16225	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
ATY42_RS16230	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
ATY42_RS16275	SM00822	ATY42_RS16275
ATY42_RS16310	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS16310	SM00267	diguanylate cyclase
ATY42_RS16310	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS16380	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY42_RS16415	SM00257	Lysin motif
ATY42_RS16445	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY42_RS16485	SM01160	ATY42_RS16485
ATY42_RS16495	SM01126	ATY42_RS16495
ATY42_RS16545	SM00098	Alkaline phosphatase homologues
ATY42_RS16550	SM00977	TilS substrate C-terminal domain
ATY42_RS16605	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY42_RS16700	SM01126	ATY42_RS16700
ATY42_RS16750	SM01126	ATY42_RS16750
ATY42_RS16765	SM00642	Alpha-amylase domain
ATY42_RS16820	SM00528	Domain in histone-like proteins of HNS family
ATY42_RS16860	SM01126	ATY42_RS16860
ATY42_RS16870	SM00869	Autotransporter beta-domain
ATY42_RS16950	SM01126	ATY42_RS16950
ATY42_RS16960	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY42_RS16980	SM01126	ATY42_RS16980
ATY42_RS17045	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY42_RS17045	SM00387	Histidine kinase-like ATPases
ATY42_RS17095	SM00506	Appr-1"-p processing enzyme
ATY42_RS17145	SM01060	ATY42_RS17145
ATY42_RS17170	SM01126	ATY42_RS17170
ATY42_RS17185	SM00091	PAS domain
ATY42_RS17185	SM00342	helix_turn_helix, arabinose operon control protein
ATY42_RS17260	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY42_RS17265	SM00481	DNA polymerase alpha chain like domain
ATY42_RS17285	SM00966	SpoVT / AbrB like domain 
ATY42_RS17310	SM00855	Phosphoglycerate mutase family
ATY42_RS17340	SM00220	Serine/Threonine protein kinases, catalytic domain
ATY42_RS17350	SM00487	DEAD-like helicases superfamily
ATY42_RS17395	SM00487	DEAD-like helicases superfamily
ATY42_RS17395	SM00490	helicase superfamily c-terminal domain
ATY42_RS17480	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS17480	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY42_RS17740	SM00478	endonuclease III
ATY42_RS17765	SM00421	helix_turn_helix, Lux Regulon
ATY42_RS17765	SM00448	cheY-homologous receiver domain
ATY42_RS17800	SM00387	Histidine kinase-like ATPases
ATY42_RS17800	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS17805	SM00448	cheY-homologous receiver domain
ATY42_RS17805	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS17840	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS17870	SM00990	ATY42_RS17870
ATY42_RS17925	SM00662	RNA polymerases D
ATY42_RS17930	SM00363	S4 RNA-binding domain
ATY42_RS17930	SM01390	ATY42_RS17930
ATY42_RS17990	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY42_RS17995	SM01374	ATY42_RS17995
ATY42_RS18015	SM00322	K homology RNA-binding domain
ATY42_RS18030	SM01382	ATY42_RS18030
ATY42_RS18030	SM01383	ATY42_RS18030
ATY42_RS18050	SM01403	ATY42_RS18050
ATY42_RS18060	SM00838	Elongation factor G C-terminus
ATY42_RS18060	SM00889	Elongation factor G, domain IV
ATY42_RS18075	SM00663	RNA polymerase I subunit A N-terminus
ATY42_RS18100	SM00649	Ribosomal protein L11/L12
ATY42_RS18105	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ATY42_RS18105	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY42_RS18155	SM01400	ATY42_RS18155
ATY42_RS18175	SM00028	Tetratricopeptide repeats
ATY42_RS18185	SM00937	ATY42_RS18185
ATY42_RS18190	SM00028	Tetratricopeptide repeats
ATY42_RS18195	SM00852	Probable molybdopterin binding domain
ATY42_RS18315	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATY42_RS18315	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATY42_RS18330	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY42_RS18330	SM00475	5'-3' exonuclease
ATY42_RS18405	SM01126	ATY42_RS18405
ATY42_RS18465	SM00448	cheY-homologous receiver domain
ATY42_RS18465	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS18470	SM00387	Histidine kinase-like ATPases
ATY42_RS18470	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS18490	SM00014	Acid phosphatase homologues
ATY42_RS18540	SM00855	Phosphoglycerate mutase family
ATY42_RS18560	SM00829	Enoylreductase
ATY42_RS18570	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS18615	SM00829	Enoylreductase
ATY42_RS18660	SM00387	Histidine kinase-like ATPases
ATY42_RS18660	SM00448	cheY-homologous receiver domain
ATY42_RS18665	SM00448	cheY-homologous receiver domain
ATY42_RS18770	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY42_RS18815	SM01126	ATY42_RS18815
ATY42_RS18875	SM00650	Ribosomal RNA adenine dimethylases
ATY42_RS18940	SM00387	Histidine kinase-like ATPases
ATY42_RS18940	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS18945	SM00448	cheY-homologous receiver domain
ATY42_RS18945	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS18955	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS18975	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS19110	SM00996	S-adenosyl-L-homocysteine hydrolase
ATY42_RS19110	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ATY42_RS19170	SM00829	Enoylreductase
ATY42_RS19210	SM00957	SecA DEAD-like domain
ATY42_RS19210	SM00958	SecA preprotein cross-linking domain
ATY42_RS19230	SM00864	Tubulin/FtsZ family, GTPase domain
ATY42_RS19230	SM00865	Tubulin/FtsZ family, C-terminal domain
ATY42_RS19235	SM00842	Cell division protein FtsA
ATY42_RS19340	SM00448	cheY-homologous receiver domain
ATY42_RS19340	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS19345	SM00387	Histidine kinase-like ATPases
ATY42_RS19345	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS19455	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS19485	SM00829	Enoylreductase
ATY42_RS19500	SM00448	cheY-homologous receiver domain
ATY42_RS19500	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS19505	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS19505	SM00387	Histidine kinase-like ATPases
ATY42_RS19505	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS19645	SM01126	ATY42_RS19645
ATY42_RS19685	SM01126	ATY42_RS19685
ATY42_RS19730	SM00354	helix_turn _helix lactose operon repressor
ATY42_RS19740	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY42_RS19740	SM00866	ATY42_RS19740
ATY42_RS19795	SM00387	Histidine kinase-like ATPases
ATY42_RS19795	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS19795	SM00448	cheY-homologous receiver domain
ATY42_RS19800	SM00448	cheY-homologous receiver domain
ATY42_RS19805	SM00387	Histidine kinase-like ATPases
ATY42_RS19805	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS19810	SM00749	bacterial OsmY and nodulation domain
ATY42_RS19820	SM01350	ATY42_RS19820
ATY42_RS19870	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY42_RS19870	SM00245	tail specific protease
ATY42_RS19875	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY42_RS19895	SM00936	Penicillin-binding protein 5, C-terminal domain 
ATY42_RS19965	SM00268	Actin
ATY42_RS20020	SM00267	diguanylate cyclase
ATY42_RS20025	SM01263	ATY42_RS20025
ATY42_RS20040	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS20040	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY42_RS20130	SM00448	cheY-homologous receiver domain
ATY42_RS20130	SM00850	LytTr DNA-binding domain
ATY42_RS20160	SM00267	diguanylate cyclase
ATY42_RS20175	SM00637	ATY42_RS20175
ATY42_RS20195	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY42_RS20195	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY42_RS20195	SM00091	PAS domain
ATY42_RS20195	SM00267	diguanylate cyclase
ATY42_RS20205	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY42_RS20270	SM00060	Fibronectin type 3 domain
ATY42_RS20380	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATY42_RS20395	SM00271	DnaJ molecular chaperone homology domain
ATY42_RS20485	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY42_RS20510	SM00861	Transketolase, pyrimidine binding domain
ATY42_RS20515	SM01126	ATY42_RS20515
ATY42_RS20630	SM00644	ATY42_RS20630
ATY42_RS20640	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY42_RS20660	SM01126	ATY42_RS20660
ATY42_RS20735	SM01126	ATY42_RS20735
ATY42_RS20755	SM01217	ATY42_RS20755
ATY42_RS20760	SM00905	Dihydroneopterin aldolase
ATY42_RS20790	SM00400	zinc finger
ATY42_RS20790	SM00493	ATY42_RS20790
ATY42_RS20790	SM00766	DNA primase DnaG DnaB-binding
ATY42_RS20890	SM01126	ATY42_RS20890
ATY42_RS20945	SM00100	Cyclic nucleotide-monophosphate binding domain
ATY42_RS20945	SM00419	helix_turn_helix, cAMP Regulatory protein
ATY42_RS20965	SM00903	Flavin reductase like domain
ATY42_RS21100	SM01150	ATY42_RS21100
ATY42_RS21110	SM01126	ATY42_RS21110
ATY42_RS21115	SM01126	ATY42_RS21115
ATY42_RS21130	SM00450	Rhodanese Homology Domain
ATY42_RS21155	SM00387	Histidine kinase-like ATPases
ATY42_RS21155	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS21160	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS21160	SM00448	cheY-homologous receiver domain
ATY42_RS21245	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY42_RS21250	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY42_RS21310	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY42_RS21310	SM00474	3'-5' exonuclease
ATY42_RS21310	SM00475	5'-3' exonuclease
ATY42_RS21310	SM00482	DNA polymerase A domain
ATY42_RS21395	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY42_RS21395	SM00331	Sigma factor PP2C-like phosphatases
ATY42_RS21410	SM00867	YceI-like domain 
ATY42_RS21440	SM00944	Pro-kumamolisin, activation domain
ATY42_RS21485	SM01126	ATY42_RS21485
ATY42_RS21535	SM00883	Chaperonin 10 Kd subunit
ATY42_RS21575	SM00986	Uracil DNA glycosylase superfamily
ATY42_RS21575	SM00987	UreE urease accessory protein, C-terminal domain 
ATY42_RS21580	SM00448	cheY-homologous receiver domain
ATY42_RS21590	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS21595	SM00487	DEAD-like helicases superfamily
ATY42_RS21595	SM00490	helicase superfamily c-terminal domain
ATY42_RS21605	SM00357	Cold shock protein domain
ATY42_RS21605	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS21605	SM00959	Rho termination factor, N-terminal domain
ATY42_RS21670	SM00563	Phosphate acyltransferases
ATY42_RS21790	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS21795	SM00387	Histidine kinase-like ATPases
ATY42_RS21800	SM00448	cheY-homologous receiver domain
ATY42_RS21800	SM00862	Transcriptional regulatory protein, C terminal
ATY42_RS21890	SM01126	ATY42_RS21890
ATY42_RS21990	SM00878	Biotin carboxylase C-terminal domain
ATY42_RS22060	SM00833	Cobalamin synthesis protein cobW C-terminal domain
ATY42_RS22105	SM00836	DALR anticodon binding domain
ATY42_RS22115	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS22200	SM00354	helix_turn _helix lactose operon repressor
ATY42_RS22215	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY42_RS22225	SM00758	ATY42_RS22225
ATY42_RS22225	SM01217	ATY42_RS22225
ATY42_RS22255	SM00633	Glycosyl hydrolase family 10
ATY42_RS22260	SM00633	Glycosyl hydrolase family 10
ATY42_RS22305	SM01126	ATY42_RS22305
ATY42_RS22325	SM00052	Putative diguanylate phosphodiesterase
ATY42_RS22375	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY42_RS22410	SM00530	Helix-turn-helix XRE-family like proteins 
ATY42_RS22460	SM00530	Helix-turn-helix XRE-family like proteins 
ATY42_RS22530	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS22530	SM00448	cheY-homologous receiver domain
ATY42_RS22535	SM00387	Histidine kinase-like ATPases
ATY42_RS22535	SM00388	His Kinase A (phosphoacceptor) domain
ATY42_RS22545	SM00938	Nitrogen regulatory protein P-II
ATY42_RS22550	SM01230	ATY42_RS22550
ATY42_RS22575	SM00028	Tetratricopeptide repeats
ATY42_RS22590	SM00563	Phosphate acyltransferases
ATY42_RS22600	SM00155	Phospholipase D. Active site motifs.
ATY42_RS22605	SM00867	YceI-like domain 
ATY42_RS22610	SM00855	Phosphoglycerate mutase family
ATY42_RS22635	SM00530	Helix-turn-helix XRE-family like proteins 
ATY42_RS22665	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS22680	SM00382	ATPases associated with a variety of cellular activities
ATY42_RS22695	SM01126	ATY42_RS22695
ATY42_RS22735	SM00829	Enoylreductase
ATY42_RS22765	SM00487	DEAD-like helicases superfamily
ATY42_RS22765	SM00490	helicase superfamily c-terminal domain
ATY42_RS22765	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY42_RS22775	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY42_RS22830	SM00421	helix_turn_helix, Lux Regulon
ATY42_RS22830	SM00448	cheY-homologous receiver domain
ATY42_RS22955	SM00155	Phospholipase D. Active site motifs.
ATY42_RS22980	SM01126	ATY42_RS22980
ATY42_RS23025	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY42_RS23060	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY42_RS23060	SM00245	tail specific protease
ATY42_RS23135	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY42_RS23275	SM00014	Acid phosphatase homologues
ATY42_RS23285	SM00028	Tetratricopeptide repeats
