locus-tag	class	description
BJD13_RS00145	COG1113	amino acid transport
BJD13_RS00380	COG0719	Fe-S assembly protein
BJD13_RS00605	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD13_RS00620	COG2201	protein-glutamate methylesterase activity
BJD13_RS00625	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD13_RS00645	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BJD13_RS00765	COG2814	Major facilitator Superfamily
BJD13_RS01025	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_RS01225	COG1113	amino acid transport
BJD13_RS01230	COG1113	amino acid transport
BJD13_RS01455	COG2267	carboxylic ester hydrolase activity
BJD13_RS01480	COG1113	amino acid transport
BJD13_RS01585	COG0754	glutathionylspermidine amidase activity
BJD13_RS01590	COG2814	Major facilitator Superfamily
BJD13_RS01685	COG0531	amino acid
BJD13_RS01690	COG2197	response regulator
BJD13_RS01715	COG1113	amino acid transport
BJD13_RS01725	COG1271	oxidase subunit
BJD13_RS01730	COG1294	oxidase, subunit
BJD13_RS01740	COG2239	Acts as a magnesium transporter
BJD13_RS01750	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD13_RS01755	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD13_RS01765	COG1660	Displays ATPase and GTPase activities
BJD13_RS01770	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BJD13_RS01775	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD13_RS01790	COG1137	ATPase activity
BJD13_RS01795	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BJD13_RS01805	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BJD13_RS01815	COG0271	Belongs to the BolA IbaG family
BJD13_RS01820	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BJD13_RS01840	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BJD13_RS01850	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BJD13_RS01860	COG0628	permease
BJD13_RS01870	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BJD13_RS01890	COG1555	photosystem II stabilization
BJD13_RS01905	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD13_RS01910	COG1477	protein flavinylation
BJD13_RS01935	COG3128	pkhd-type hydroxylase
BJD13_RS01940	COG4774	siderophore transport
BJD13_RS01945	COG2146	nitrite reductase [NAD(P)H] activity
BJD13_RS01950	COG0456	acetyltransferase
BJD13_RS01955	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BJD13_RS01960	COG0719	Fe-S assembly protein
BJD13_RS01965	COG0396	ATPase activity
BJD13_RS01970	COG0719	Fe-S assembly protein
BJD13_RS01975	COG1959	2 iron, 2 sulfur cluster binding
BJD13_RS01985	COG0693	protein deglycase activity
BJD13_RS02005	COG0739	heme binding
BJD13_RS02020	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BJD13_RS02050	COG0519	Catalyzes the synthesis of GMP from XMP
BJD13_RS02060	COG1678	Uncharacterized ACR, COG1678
BJD13_RS02065	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BJD13_RS02070	COG0540	Belongs to the ATCase OTCase family
BJD13_RS02075	COG1764	response to oxidative stress
BJD13_RS02085	COG0384	phenazine biosynthesis protein PhzF
BJD13_RS02090	COG0384	phenazine biosynthesis protein PhzF
BJD13_RS02095	COG0527	aspartate kinase activity
BJD13_RS02110	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BJD13_RS02125	COG0142	geranyltranstransferase activity
BJD13_RS02130	COG0629	single-stranded DNA binding
BJD13_RS02135	COG5001	Diguanylate cyclase
BJD13_RS02135	COG2203	Gaf domain
BJD13_RS02135	COG4251	negative regulation of phosphorylation
BJD13_RS02135	COG3706	GGDEF domain
BJD13_RS02140	COG0604	alcohol dehydrogenase
BJD13_RS02140	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS02140	COG3321	synthase
BJD13_RS02145	COG2080	2 iron, 2 sulfur cluster binding
BJD13_RS02150	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BJD13_RS02155	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD13_RS02160	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
BJD13_RS02200	COG2879	small protein
BJD13_RS02205	COG1966	Carbon starvation protein
BJD13_RS02210	COG1741	Belongs to the pirin family
BJD13_RS02225	COG1741	Belongs to the pirin family
BJD13_RS02240	COG1515	deoxyribonuclease V activity
BJD13_RS02245	COG0588	phosphoglycerate mutase activity
BJD13_RS02255	COG3590	peptidase
BJD13_RS02260	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD13_RS02265	COG2201	protein-glutamate methylesterase activity
BJD13_RS02270	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD13_RS02275	COG2199	diguanylate cyclase activity
BJD13_RS02275	COG2202	Pas domain
BJD13_RS02275	COG2200	EAL domain
BJD13_RS02280	COG0835	chemotaxis
BJD13_RS02285	COG0840	transmembrane signaling receptor activity
BJD13_RS02295	COG2198	Histidine kinase
BJD13_RS02295	COG0643	Histidine kinase
BJD13_RS02305	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BJD13_RS02315	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BJD13_RS02320	COG0745	RESPONSE REGULATOR receiver
BJD13_RS02325	COG2205	protein histidine kinase activity
BJD13_RS02335	COG4452	Inner membrane protein CreD
BJD13_RS02360	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD13_RS02365	COG0735	belongs to the Fur family
BJD13_RS02380	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_RS02390	COG1309	transcriptional regulator
BJD13_RS02405	COG2207	Transcriptional regulator
BJD13_RS02415	COG0583	DNA-binding transcription factor activity
BJD13_RS02420	COG2814	Major facilitator Superfamily
BJD13_RS02425	COG0667	Aldo Keto reductase
BJD13_RS02490	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BJD13_RS02545	COG5002	protein histidine kinase activity
BJD13_RS02545	COG5001	Diguanylate cyclase
BJD13_RS02550	COG1187	pseudouridine synthase activity
BJD13_RS02575	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD13_RS02585	COG0475	glutathione-regulated potassium exporter activity
BJD13_RS02590	COG5000	phosphorelay sensor kinase activity
BJD13_RS02590	COG5002	protein histidine kinase activity
BJD13_RS02595	COG0745	RESPONSE REGULATOR receiver
BJD13_RS02600	COG1538	Outer membrane efflux protein
BJD13_RS02630	COG1132	(ABC) transporter
BJD13_RS02675	COG2155	Conserved Protein
BJD13_RS02705	COG3118	belongs to the thioredoxin family
BJD13_RS02715	COG0495	leucyl-tRNA aminoacylation
BJD13_RS02730	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BJD13_RS02745	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BJD13_RS02755	COG2968	Membrane
BJD13_RS02760	COG0424	maF-like protein
BJD13_RS02770	COG3164	Protein of unknown function
BJD13_RS02780	COG0312	modulator of DNA gyrase
BJD13_RS02785	COG3028	Belongs to the UPF0307 family
BJD13_RS02790	COG0312	modulator of DNA gyrase
BJD13_RS02800	COG4104	PAAR repeat-containing protein
BJD13_RS02805	COG0142	geranyltranstransferase activity
BJD13_RS02810	COG1722	exodeoxyribonuclease VII activity
BJD13_RS02815	COG0037	tRNA processing
BJD13_RS02825	COG1785	Belongs to the alkaline phosphatase family
BJD13_RS02830	COG1301	dicarboxylic acid transport
BJD13_RS02845	COG0791	NLP P60 protein
BJD13_RS02850	COG0791	NLP P60 protein
BJD13_RS02855	COG1047	Peptidyl-prolyl cis-trans
BJD13_RS02860	COG2311	Membrane
BJD13_RS02865	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD13_RS02870	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD13_RS02890	COG3590	peptidase
BJD13_RS02900	COG3590	peptidase
BJD13_RS02925	COG0489	protein tyrosine kinase activity
BJD13_RS02935	COG0717	Belongs to the dCTP deaminase family
BJD13_RS02960	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD13_RS02965	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD13_RS02985	COG0494	nUDIX hydrolase
BJD13_RS02990	COG0433	COG0433 Predicted ATPase
BJD13_RS03000	COG0688	phosphatidylethanolamine metabolic process
BJD13_RS03010	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD13_RS03015	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BJD13_RS03020	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BJD13_RS03025	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BJD13_RS03040	COG0101	tRNA pseudouridine synthase activity
BJD13_RS03045	COG0135	phosphoribosylanthranilate isomerase activity
BJD13_RS03055	COG0133	tryptophan synthase activity
BJD13_RS03065	COG0159	tryptophan synthase activity
BJD13_RS03070	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BJD13_RS03075	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD13_RS03105	COG4221	oxidoreductase activity
BJD13_RS03110	COG0149	triose-phosphate isomerase activity
BJD13_RS03125	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD13_RS03130	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD13_RS03135	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD13_RS03140	COG0649	NAD binding
BJD13_RS03145	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BJD13_RS03150	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BJD13_RS03155	COG1034	ATP synthesis coupled electron transport
BJD13_RS03160	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BJD13_RS03165	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD13_RS03190	COG1007	ATP synthesis coupled electron transport
BJD13_RS03200	COG0779	Required for maturation of 30S ribosomal subunits
BJD13_RS03205	COG0195	Participates in both transcription termination and antitermination
BJD13_RS03210	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BJD13_RS03215	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BJD13_RS03220	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BJD13_RS03225	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BJD13_RS03230	COG1185	polyribonucleotide nucleotidyltransferase activity
BJD13_RS03265	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD13_RS03275	COG2095	MarC family integral membrane protein
BJD13_RS03285	COG1611	Belongs to the LOG family
BJD13_RS03290	COG3275	phosphorelay sensor kinase activity
BJD13_RS03335	COG0556	nucleotide-excision repair
BJD13_RS03355	COG3505	Type IV secretory pathway VirD4
BJD13_RS03375	COG2948	multi-organism process
BJD13_RS03395	COG3702	type iv secretory pathway
BJD13_RS03455	COG2801	Transposase and inactivated derivatives
BJD13_RS03460	COG2963	transposase activity
BJD13_RS03465	COG0366	Alpha amylase catalytic
BJD13_RS03480	COG1082	Xylose isomerase domain protein TIM barrel
BJD13_RS03505	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BJD13_RS03510	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BJD13_RS03525	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BJD13_RS03530	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD13_RS03530	COG0072	phenylalanine-tRNA ligase activity
BJD13_RS03580	COG0438	transferase activity, transferring glycosyl groups
BJD13_RS03585	COG0438	transferase activity, transferring glycosyl groups
BJD13_RS03595	COG0438	transferase activity, transferring glycosyl groups
BJD13_RS03620	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD13_RS03625	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD13_RS03630	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD13_RS03650	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BJD13_RS03660	COG1960	acyl-CoA dehydrogenase activity
BJD13_RS03670	COG3040	lipid binding
BJD13_RS03685	COG0322	excinuclease ABC activity
BJD13_RS03700	COG4191	Histidine kinase
BJD13_RS03700	COG0784	Response regulator, receiver
BJD13_RS03710	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
BJD13_RS03715	COG1194	a g-specific adenine glycosylase
BJD13_RS03725	COG0552	protein localization to endoplasmic reticulum
BJD13_RS03735	COG3938	Belongs to the proline racemase family
BJD13_RS03740	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD13_RS03755	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD13_RS03765	COG0006	proline dipeptidase activity
BJD13_RS03780	COG0531	amino acid
BJD13_RS03850	COG0326	Molecular chaperone. Has ATPase activity
BJD13_RS03855	COG0742	ribosomal rna small subunit methyltransferase
BJD13_RS03860	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BJD13_RS03875	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BJD13_RS03880	COG0405	Gamma-glutamyltransferase
BJD13_RS03885	COG3291	Pkd domain containing protein
BJD13_RS03890	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BJD13_RS03925	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BJD13_RS03930	COG0343	queuine tRNA-ribosyltransferase activity
BJD13_RS03935	COG1862	Preprotein translocase
BJD13_RS03945	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD13_RS03995	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD13_RS03995	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD13_RS04000	COG1105	Belongs to the carbohydrate kinase PfkB family
BJD13_RS04005	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD13_RS04005	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD13_RS04010	COG1609	Transcriptional regulator
BJD13_RS04015	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_RS04020	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_RS04030	COG2902	Dehydrogenase
BJD13_RS04035	COG0477	Major facilitator Superfamily
BJD13_RS04045	COG5002	protein histidine kinase activity
BJD13_RS04045	COG2205	protein histidine kinase activity
BJD13_RS04045	COG0784	Response regulator, receiver
BJD13_RS04050	COG2733	membrane
BJD13_RS04060	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BJD13_RS04070	COG2223	nitrite transmembrane transporter activity
BJD13_RS04075	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BJD13_RS04080	COG0243	molybdopterin cofactor binding
BJD13_RS04090	COG0477	Major facilitator Superfamily
BJD13_RS04095	COG2703	oxygen carrier activity
BJD13_RS04105	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD13_RS04110	COG0174	glutamine synthetase
BJD13_RS04115	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BJD13_RS04130	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BJD13_RS04150	COG3842	ATPase activity
BJD13_RS04160	COG1176	ABC-type spermidine putrescine transport system, permease component I
BJD13_RS04165	COG1177	transmembrane transport
BJD13_RS04170	COG1012	belongs to the aldehyde dehydrogenase family
BJD13_RS04185	COG4535	Mg2 and Co2 transporter CorC
BJD13_RS04195	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BJD13_RS04205	COG1702	phosphate starvation-inducible protein PhoH
BJD13_RS04210	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD13_RS04225	COG0741	lytic transglycosylase activity
BJD13_RS04235	COG0723	plastoquinol--plastocyanin reductase activity
BJD13_RS04240	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BJD13_RS04245	COG2857	Cytochrome c1
BJD13_RS04250	COG0625	glutathione transferase activity
BJD13_RS04255	COG2969	positive regulation of protein catabolic process
BJD13_RS04275	COG1201	RNA secondary structure unwinding
BJD13_RS04280	COG2094	Belongs to the DNA glycosylase MPG family
BJD13_RS04285	COG0840	transmembrane signaling receptor activity
BJD13_RS04290	COG0835	chemotaxis
BJD13_RS04335	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD13_RS04350	COG1570	exodeoxyribonuclease VII activity
BJD13_RS04355	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD13_RS04360	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD13_RS04360	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BJD13_RS04365	COG0802	atpase or kinase
BJD13_RS04370	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD13_RS04375	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BJD13_RS04400	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS04405	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD13_RS04410	COG0501	Belongs to the peptidase M48B family
BJD13_RS04420	COG2081	HI0933 family
BJD13_RS04425	COG4681	YaeQ
BJD13_RS04435	COG0625	glutathione transferase activity
BJD13_RS04445	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BJD13_RS04450	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BJD13_RS04455	COG0513	Belongs to the DEAD box helicase family
BJD13_RS04460	COG0488	(ABC) transporter
BJD13_RS04475	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BJD13_RS04480	COG0483	inositol monophosphate 1-phosphatase activity
BJD13_RS04495	COG3300	MHYT domain
BJD13_RS04495	COG5001	Diguanylate cyclase
BJD13_RS04500	COG1509	lysine 2,3-aminomutase activity
BJD13_RS04505	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD13_RS04515	COG0402	S-adenosylhomocysteine deaminase activity
BJD13_RS04520	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BJD13_RS04535	COG4677	pectinesterase activity
BJD13_RS04560	COG4302	ethanolamine ammonia-lyase activity
BJD13_RS04590	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BJD13_RS04595	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BJD13_RS04610	COG2166	iron-sulfur cluster assembly
BJD13_RS04615	COG0215	cysteine-tRNA ligase activity
BJD13_RS04625	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BJD13_RS04630	COG0137	argininosuccinate synthase activity
BJD13_RS04640	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD13_RS04645	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BJD13_RS04655	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BJD13_RS04660	COG0165	Argininosuccinate lyase
BJD13_RS04670	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BJD13_RS04675	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BJD13_RS04705	COG1294	oxidase, subunit
BJD13_RS04715	COG4988	ABC transporter
BJD13_RS04720	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BJD13_RS04725	COG1278	Cold shock
BJD13_RS04730	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD13_RS04750	COG1138	Cytochrome C-type biogenesis protein
BJD13_RS04755	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD13_RS04775	COG4133	protoheme IX ABC transporter activity
BJD13_RS04780	COG0436	Aminotransferase
BJD13_RS04800	COG1187	pseudouridine synthase activity
BJD13_RS04805	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BJD13_RS04810	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BJD13_RS04815	COG2350	Protein conserved in bacteria
BJD13_RS04850	COG0395	ABC-type sugar transport system, permease component
BJD13_RS04875	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD13_RS04880	COG2957	Belongs to the agmatine deiminase family
BJD13_RS04895	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BJD13_RS04900	COG0539	negative regulation of cytoplasmic translation
BJD13_RS04905	COG0776	regulation of translation
BJD13_RS04915	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BJD13_RS04920	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD13_RS04930	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BJD13_RS04935	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD13_RS04935	COG0475	glutathione-regulated potassium exporter activity
BJD13_RS04945	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BJD13_RS04955	COG0519	Catalyzes the synthesis of GMP from XMP
BJD13_RS04955	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD13_RS04965	COG2818	Glycosylase
BJD13_RS04970	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS04980	COG0583	DNA-binding transcription factor activity
BJD13_RS04985	COG0667	Aldo Keto reductase
BJD13_RS04995	COG3002	Belongs to the UPF0753 family
BJD13_RS05000	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BJD13_RS05005	COG0583	DNA-binding transcription factor activity
BJD13_RS05015	COG0633	Ferredoxin
BJD13_RS05035	COG0583	DNA-binding transcription factor activity
BJD13_RS05050	COG2197	response regulator
BJD13_RS05055	COG4585	Histidine kinase
BJD13_RS05065	COG1335	isochorismatase
BJD13_RS05080	COG2814	Major facilitator Superfamily
BJD13_RS05100	COG1914	H( )-stimulated, divalent metal cation uptake system
BJD13_RS05115	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BJD13_RS05120	COG0668	transmembrane transport
BJD13_RS05130	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BJD13_RS05145	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS05150	COG1183	phosphatidylcholine synthase activity
BJD13_RS05160	COG3243	poly(R)-hydroxyalkanoic acid synthase
BJD13_RS05175	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD13_RS05175	COG0723	plastoquinol--plastocyanin reductase activity
BJD13_RS05185	COG2183	response to ionizing radiation
BJD13_RS05190	COG0784	Response regulator, receiver
BJD13_RS05190	COG2205	protein histidine kinase activity
BJD13_RS05260	COG0800	Aldolase
BJD13_RS05265	COG0129	dihydroxy-acid dehydratase activity
BJD13_RS05270	COG0363	glucosamine-6-phosphate deaminase activity
BJD13_RS05275	COG0837	glucose binding
BJD13_RS05280	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD13_RS05290	COG0354	folic acid binding
BJD13_RS05305	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BJD13_RS05320	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BJD13_RS05325	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BJD13_RS05335	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD13_RS05340	COG1136	(ABC) transporter
BJD13_RS05355	COG0811	peptide transport
BJD13_RS05365	COG1132	(ABC) transporter
BJD13_RS05370	COG1663	tetraacyldisaccharide 4'-kinase activity
BJD13_RS05375	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BJD13_RS05380	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BJD13_RS05390	COG0322	excinuclease ABC activity
BJD13_RS05395	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD13_RS05460	COG0582	viral genome integration into host DNA
BJD13_RS05470	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BJD13_RS05490	COG1054	Belongs to the UPF0176 family
BJD13_RS05500	COG1530	ribonuclease E activity
BJD13_RS05510	COG3064	Membrane
BJD13_RS05515	COG0428	transporter
BJD13_RS05525	COG2154	pterin-4-alpha-carbinolamine dehydratase
BJD13_RS05530	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BJD13_RS05530	COG0316	Belongs to the HesB IscA family
BJD13_RS05545	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_RS05550	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_RS05565	COG0596	Alpha beta hydrolase
BJD13_RS05590	COG0363	glucosamine-6-phosphate deaminase activity
BJD13_RS05605	COG1073	alpha beta
BJD13_RS05605	COG2226	methyltransferase
BJD13_RS05615	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS05645	COG0640	Transcriptional regulator
BJD13_RS05670	COG0653	protein targeting
BJD13_RS05685	COG0653	protein targeting
BJD13_RS05700	COG0653	protein targeting
BJD13_RS05780	COG2197	response regulator
BJD13_RS05785	COG4585	Histidine kinase
BJD13_RS05800	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
BJD13_RS05815	COG1858	cytochrome C peroxidase
BJD13_RS05845	COG0515	serine threonine protein kinase
BJD13_RS05850	COG0631	protein serine/threonine phosphatase activity
BJD13_RS06035	COG4566	intracellular signal transduction
BJD13_RS06045	COG5001	Diguanylate cyclase
BJD13_RS06060	COG3685	Protein conserved in bacteria
BJD13_RS06080	COG0243	molybdopterin cofactor binding
BJD13_RS06090	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD13_RS06095	COG2223	nitrite transmembrane transporter activity
BJD13_RS06100	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BJD13_RS06110	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD13_RS06110	COG1648	precorrin-2 dehydrogenase activity
BJD13_RS06135	COG0746	molybdenum cofactor guanylyltransferase activity
BJD13_RS06140	COG0303	'Molybdopterin
BJD13_RS06150	COG0708	Exodeoxyribonuclease III
BJD13_RS06195	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BJD13_RS06200	COG0303	'Molybdopterin
BJD13_RS06205	COG1160	GTP binding
BJD13_RS06210	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD13_RS06220	COG1426	Protein conserved in bacteria
BJD13_RS06230	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BJD13_RS06245	COG1250	3-hydroxyacyl-CoA dehydrogenase
BJD13_RS06245	COG1024	Enoyl-CoA hydratase
BJD13_RS06250	COG0183	Belongs to the thiolase family
BJD13_RS06255	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BJD13_RS06260	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BJD13_RS06275	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BJD13_RS06285	COG1674	ftsk spoiiie
BJD13_RS06290	COG0492	ferredoxin-NADP+ reductase activity
BJD13_RS06305	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
BJD13_RS06315	COG0542	response to heat
BJD13_RS06330	COG0482	sulfurtransferase activity
BJD13_RS06335	COG2915	High frequency lysogenization protein hflD homolog
BJD13_RS06370	COG5002	protein histidine kinase activity
BJD13_RS06390	COG0784	Response regulator, receiver
BJD13_RS06390	COG0835	chemotaxis
BJD13_RS06400	COG1558	bacterial-type flagellum-dependent cell motility
BJD13_RS06405	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BJD13_RS06415	COG4787	bacterial-type flagellum-dependent cell motility
BJD13_RS06430	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
BJD13_RS06435	COG1706	bacterial-type flagellum-dependent cell motility
BJD13_RS06440	COG3951	Flagellar rod assembly protein muramidase FlgJ
BJD13_RS06440	COG1705	Flagellar rod assembly protein muramidase FlgJ
BJD13_RS06450	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD13_RS06455	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD13_RS06460	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BJD13_RS06490	COG2201	protein-glutamate methylesterase activity
BJD13_RS06510	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD13_RS06515	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS06520	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS06555	COG1677	Flagellar hook-basal body complex protein FliE
BJD13_RS06605	COG3190	flagellar
BJD13_RS06625	COG1684	flagellar biosynthetic protein fliR
BJD13_RS06685	COG0643	Histidine kinase
BJD13_RS06685	COG0784	Response regulator, receiver
BJD13_RS06685	COG2198	Histidine kinase
BJD13_RS06705	COG2963	transposase activity
BJD13_RS06710	COG0643	Histidine kinase
BJD13_RS06710	COG2198	Histidine kinase
BJD13_RS06740	COG2963	transposase activity
BJD13_RS06745	COG2801	Transposase and inactivated derivatives
BJD13_RS06770	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BJD13_RS06775	COG1360	Flagellar Motor Protein
BJD13_RS06785	COG0835	chemotaxis
BJD13_RS06795	COG0745	RESPONSE REGULATOR receiver
BJD13_RS06810	COG0840	transmembrane signaling receptor activity
BJD13_RS06820	COG0840	transmembrane signaling receptor activity
BJD13_RS06825	COG0840	transmembrane signaling receptor activity
BJD13_RS06835	COG0840	transmembrane signaling receptor activity
BJD13_RS06840	COG0840	transmembrane signaling receptor activity
BJD13_RS06845	COG0840	transmembrane signaling receptor activity
BJD13_RS06850	COG0840	transmembrane signaling receptor activity
BJD13_RS06860	COG0840	transmembrane signaling receptor activity
BJD13_RS06870	COG0840	transmembrane signaling receptor activity
BJD13_RS06875	COG0840	transmembrane signaling receptor activity
BJD13_RS06895	COG0835	chemotaxis
BJD13_RS06905	COG0840	transmembrane signaling receptor activity
BJD13_RS06915	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
BJD13_RS06920	COG2201	protein-glutamate methylesterase activity
BJD13_RS06930	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD13_RS06960	COG0318	PFAM AMP-dependent synthetase and ligase
BJD13_RS06965	COG1024	Enoyl-CoA hydratase
BJD13_RS06970	COG0784	Response regulator, receiver
BJD13_RS06970	COG2205	protein histidine kinase activity
BJD13_RS06970	COG2198	Histidine kinase
BJD13_RS06975	COG2198	Histidine kinase
BJD13_RS06975	COG0784	Response regulator, receiver
BJD13_RS06975	COG2205	protein histidine kinase activity
BJD13_RS06985	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BJD13_RS06990	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BJD13_RS06995	COG3279	Response regulator of the LytR AlgR family
BJD13_RS07005	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BJD13_RS07015	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD13_RS07020	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BJD13_RS07030	COG0505	Belongs to the CarA family
BJD13_RS07035	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BJD13_RS07045	COG2258	MOSC domain
BJD13_RS07050	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD13_RS07095	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD13_RS07115	COG0277	FAD linked oxidase domain protein
BJD13_RS07120	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BJD13_RS07130	COG0531	amino acid
BJD13_RS07135	COG0531	amino acid
BJD13_RS07140	COG0235	Class ii aldolase
BJD13_RS07145	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
BJD13_RS07150	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
BJD13_RS07165	COG0140	phosphoribosyl-ATP diphosphatase activity
BJD13_RS07165	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BJD13_RS07170	COG0107	imidazoleglycerol-phosphate synthase activity
BJD13_RS07175	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
BJD13_RS07180	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BJD13_RS07185	COG0131	Imidazoleglycerol-phosphate dehydratase
BJD13_RS07185	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BJD13_RS07190	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD13_RS07195	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BJD13_RS07200	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BJD13_RS07210	COG0124	histidyl-tRNA synthetase
BJD13_RS07215	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD13_RS07225	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BJD13_RS07240	COG0460	homoserine dehydrogenase
BJD13_RS07240	COG0527	aspartate kinase activity
BJD13_RS07245	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
BJD13_RS07260	COG2963	transposase activity
BJD13_RS07265	COG2801	Transposase and inactivated derivatives
BJD13_RS07275	COG3210	domain, Protein
BJD13_RS07275	COG3210	domain, Protein
BJD13_RS07330	COG3081	Nucleoid-associated protein
BJD13_RS07355	COG2814	Major facilitator Superfamily
BJD13_RS07415	COG0210	DNA helicase
BJD13_RS07485	COG2003	Belongs to the UPF0758 family
BJD13_RS07510	COG1012	belongs to the aldehyde dehydrogenase family
BJD13_RS07530	COG0167	dihydroorotate dehydrogenase activity
BJD13_RS07535	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BJD13_RS07545	COG1794	racemase activity, acting on amino acids and derivatives
BJD13_RS07555	COG0671	phosphoesterase, PA-phosphatase related
BJD13_RS07560	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BJD13_RS07575	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
BJD13_RS07580	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD13_RS07585	COG2203	Gaf domain
BJD13_RS07585	COG3706	GGDEF domain
BJD13_RS07585	COG4251	negative regulation of phosphorylation
BJD13_RS07585	COG5001	Diguanylate cyclase
BJD13_RS07600	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD13_RS07625	COG0166	Belongs to the GPI family
BJD13_RS07630	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
BJD13_RS07635	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BJD13_RS07640	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BJD13_RS07660	COG1469	GTP cyclohydrolase I activity
BJD13_RS07665	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD13_RS07680	COG0477	Major facilitator Superfamily
BJD13_RS07685	COG2115	Belongs to the xylose isomerase family
BJD13_RS07690	COG1070	Carbohydrate kinase
BJD13_RS07700	COG1501	Belongs to the glycosyl hydrolase 31 family
BJD13_RS07740	COG0800	Aldolase
BJD13_RS07745	COG4948	Mandelate Racemase Muconate Lactonizing
BJD13_RS07755	COG3734	2-keto-3-deoxy-galactonokinase
BJD13_RS07760	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BJD13_RS07770	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD13_RS07785	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BJD13_RS07790	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BJD13_RS07805	COG0351	phosphomethylpyrimidine kinase
BJD13_RS07830	COG0583	DNA-binding transcription factor activity
BJD13_RS07835	COG1741	Belongs to the pirin family
BJD13_RS07855	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BJD13_RS07860	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BJD13_RS07865	COG2137	regulation of response to DNA damage stimulus
BJD13_RS07875	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BJD13_RS07880	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD13_RS07890	COG1546	Belongs to the CinA family
BJD13_RS07895	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BJD13_RS07905	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BJD13_RS07910	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BJD13_RS07920	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BJD13_RS07925	COG1534	Rna-binding protein
BJD13_RS07940	COG1238	metal cluster binding
BJD13_RS07945	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD13_RS07950	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BJD13_RS07955	COG2840	Smr protein MutS2
BJD13_RS07960	COG0585	pseudouridine synthase activity
BJD13_RS07965	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BJD13_RS07970	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BJD13_RS07975	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BJD13_RS07980	COG0148	phosphopyruvate hydratase activity
BJD13_RS07995	COG0504	CTP synthase activity
BJD13_RS08020	COG0306	phosphate transporter
BJD13_RS08035	COG1253	flavin adenine dinucleotide binding
BJD13_RS08050	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BJD13_RS08055	COG2271	Major facilitator Superfamily
BJD13_RS08060	COG1132	(ABC) transporter
BJD13_RS08065	COG1136	(ABC) transporter
BJD13_RS08085	COG0438	transferase activity, transferring glycosyl groups
BJD13_RS08095	COG2264	protein methyltransferase activity
BJD13_RS08120	COG1216	Glycosyl transferase, family 2
BJD13_RS08120	COG1442	glycosyl transferase family 8
BJD13_RS08125	COG2244	polysaccharide biosynthetic process
BJD13_RS08180	COG1595	DNA-templated transcription, initiation
BJD13_RS08195	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD13_RS08205	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD13_RS08215	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD13_RS08230	COG0784	Response regulator, receiver
BJD13_RS08230	COG4191	Histidine kinase
BJD13_RS08235	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
BJD13_RS08265	COG0840	transmembrane signaling receptor activity
BJD13_RS08280	COG0583	DNA-binding transcription factor activity
BJD13_RS08285	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD13_RS08290	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BJD13_RS08305	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BJD13_RS08310	COG1605	Chorismate mutase
BJD13_RS08310	COG0077	Prephenate dehydratase
BJD13_RS08315	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BJD13_RS08320	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BJD13_RS08325	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
BJD13_RS08365	COG1228	amidohydrolase
BJD13_RS08370	COG2986	histidine ammonia-lyase
BJD13_RS08380	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BJD13_RS08390	COG4993	Dehydrogenase
BJD13_RS08400	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
BJD13_RS08415	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
BJD13_RS08420	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BJD13_RS08425	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD13_RS08435	COG3115	cell septum assembly
BJD13_RS08445	COG0359	binds to the 23S rRNA
BJD13_RS08450	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BJD13_RS08455	COG0360	Binds together with S18 to 16S ribosomal RNA
BJD13_RS08460	COG0316	Belongs to the HesB IscA family
BJD13_RS08470	COG0017	Asparaginyl-tRNA synthetase
BJD13_RS08540	COG0288	reversible hydration of carbon dioxide
BJD13_RS08545	COG0662	Cupin 2, conserved barrel domain protein
BJD13_RS08555	COG3844	kynureninase activity
BJD13_RS08560	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD13_RS08570	COG2925	Exonuclease
BJD13_RS08580	COG0667	Aldo Keto reductase
BJD13_RS08595	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BJD13_RS08600	COG0116	Belongs to the methyltransferase superfamily
BJD13_RS08600	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD13_RS08645	COG0494	nUDIX hydrolase
BJD13_RS08655	COG1024	Enoyl-CoA hydratase
BJD13_RS08665	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BJD13_RS08670	COG0659	secondary active sulfate transmembrane transporter activity
BJD13_RS08695	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD13_RS08700	COG0573	inorganic phosphate transmembrane transporter activity
BJD13_RS08705	COG0581	inorganic phosphate transmembrane transporter activity
BJD13_RS08710	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BJD13_RS08715	COG0704	Plays a role in the regulation of phosphate uptake
BJD13_RS08725	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD13_RS08740	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD13_RS08750	COG0557	exoribonuclease II activity
BJD13_RS08780	COG1960	acyl-CoA dehydrogenase activity
BJD13_RS08785	COG2226	methyltransferase
BJD13_RS08790	COG1410	methionine synthase
BJD13_RS08790	COG0646	methionine synthase
BJD13_RS08795	COG0646	methionine synthase
BJD13_RS08795	COG1410	methionine synthase
BJD13_RS08805	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD13_RS08830	COG2900	Belongs to the SlyX family
BJD13_RS08845	COG0386	Belongs to the glutathione peroxidase family
BJD13_RS08855	COG1725	Transcriptional regulator
BJD13_RS08860	COG1131	(ABC) transporter
BJD13_RS08890	COG1253	flavin adenine dinucleotide binding
BJD13_RS08910	COG2850	peptidyl-arginine hydroxylation
BJD13_RS08945	COG1132	(ABC) transporter
BJD13_RS08950	COG0583	DNA-binding transcription factor activity
BJD13_RS08980	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BJD13_RS08985	COG0484	heat shock protein binding
BJD13_RS08990	COG0443	Heat shock 70 kDa protein
BJD13_RS08995	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BJD13_RS09000	COG1420	regulation of RNA biosynthetic process
BJD13_RS09005	COG0497	DNA recombination
BJD13_RS09015	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD13_RS09030	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BJD13_RS09065	COG3706	GGDEF domain
BJD13_RS09110	COG0583	DNA-binding transcription factor activity
BJD13_RS09125	COG0415	Belongs to the DNA photolyase family
BJD13_RS09130	COG0305	Participates in initiation and elongation during chromosome replication
BJD13_RS09140	COG0367	asparagine synthase
BJD13_RS09160	COG1960	acyl-CoA dehydrogenase activity
BJD13_RS09175	COG0084	hydrolase, TatD family'
BJD13_RS09180	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BJD13_RS09240	COG0386	Belongs to the glutathione peroxidase family
BJD13_RS09245	COG0339	signal peptide processing
BJD13_RS09305	COG2814	Major facilitator Superfamily
BJD13_RS09310	COG1566	PFAM secretion protein HlyD family protein
BJD13_RS09335	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD13_RS09350	COG4774	siderophore transport
BJD13_RS09360	COG0367	asparagine synthase
BJD13_RS09365	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD13_RS09370	COG1393	Belongs to the ArsC family
BJD13_RS09380	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BJD13_RS09420	COG0052	Belongs to the universal ribosomal protein uS2 family
BJD13_RS09425	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BJD13_RS09435	COG0528	UMP kinase activity
BJD13_RS09440	COG0233	cytoplasmic translational termination
BJD13_RS09445	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BJD13_RS09450	COG0575	Belongs to the CDS family
BJD13_RS09455	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BJD13_RS09460	COG0750	zinc metalloprotease
BJD13_RS09475	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD13_RS09480	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD13_RS09485	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD13_RS09490	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD13_RS09505	COG0825	malonyl-CoA metabolic process
BJD13_RS09520	COG1981	membrane
BJD13_RS09540	COG1695	Transcriptional regulator
BJD13_RS09560	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD13_RS09570	COG2040	homocysteine
BJD13_RS09575	COG0833	amino acid
BJD13_RS09590	COG0346	lactoylglutathione lyase activity
BJD13_RS09610	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD13_RS09610	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD13_RS09620	COG2878	Part of a membrane complex involved in electron transport
BJD13_RS09640	COG1595	DNA-templated transcription, initiation
BJD13_RS09665	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD13_RS09680	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD13_RS09685	COG0251	oxidation-reduction process
BJD13_RS09695	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BJD13_RS09695	COG0392	lysyltransferase activity
BJD13_RS09730	COG2814	Major facilitator Superfamily
BJD13_RS09735	COG1902	pentaerythritol trinitrate reductase activity
BJD13_RS09740	COG2824	Alkylphosphonate utilization operon protein PhnA
BJD13_RS09750	COG1047	Peptidyl-prolyl cis-trans
BJD13_RS09755	COG1077	Cell shape determining protein MreB Mrl
BJD13_RS09770	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD13_RS09780	COG5487	UPF0391 membrane protein
BJD13_RS09785	COG1451	nucleotide metabolic process
BJD13_RS09810	COG0183	Belongs to the thiolase family
BJD13_RS09845	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BJD13_RS09845	COG1793	dna ligase
BJD13_RS09855	COG1793	dna ligase
BJD13_RS09860	COG1201	RNA secondary structure unwinding
BJD13_RS09870	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD13_RS09875	COG1278	Cold shock
BJD13_RS09880	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BJD13_RS09885	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
BJD13_RS09890	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD13_RS09895	COG3046	protein related to deoxyribodipyrimidine photolyase
BJD13_RS09900	COG1233	COG1233 Phytoene dehydrogenase and related
BJD13_RS09905	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BJD13_RS09910	COG2954	triphosphatase activity
BJD13_RS09915	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD13_RS09930	COG1381	Involved in DNA repair and RecF pathway recombination
BJD13_RS09935	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BJD13_RS09940	COG0571	ribonuclease III activity
BJD13_RS09955	COG0481	GTPase activity
BJD13_RS09960	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD13_RS09975	COG1024	Enoyl-CoA hydratase
BJD13_RS09975	COG1250	3-hydroxyacyl-CoA dehydrogenase
BJD13_RS09995	COG1024	Enoyl-CoA hydratase
BJD13_RS10000	COG1960	acyl-CoA dehydrogenase activity
BJD13_RS10020	COG3867	Arabinogalactan endo-beta-1,4-galactanase
BJD13_RS10025	COG3250	beta-galactosidase activity
BJD13_RS10040	COG0840	transmembrane signaling receptor activity
BJD13_RS10050	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS10055	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BJD13_RS10065	COG3483	tryptophan 2,3-dioxygenase activity
BJD13_RS10075	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BJD13_RS10085	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BJD13_RS10105	COG0534	Mate efflux family protein
BJD13_RS10110	COG0335	large ribosomal subunit rRNA binding
BJD13_RS10115	COG0336	Belongs to the RNA methyltransferase TrmD family
BJD13_RS10120	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BJD13_RS10125	COG0228	four-way junction DNA binding
BJD13_RS10130	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD13_RS10140	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BJD13_RS10145	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD13_RS10170	COG4191	Histidine kinase
BJD13_RS10170	COG0784	Response regulator, receiver
BJD13_RS10175	COG4999	Histidine kinase
BJD13_RS10175	COG2205	protein histidine kinase activity
BJD13_RS10175	COG3437	response regulator, receiver
BJD13_RS10175	COG3850	Histidine kinase
BJD13_RS10180	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD13_RS10190	COG2205	protein histidine kinase activity
BJD13_RS10195	COG5507	3-demethylubiquinone-9 3-methyltransferase
BJD13_RS10205	COG4771	TonB-dependent receptor
BJD13_RS10230	COG2172	sigma factor antagonist activity
BJD13_RS10235	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD13_RS10240	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD13_RS10250	COG0326	Molecular chaperone. Has ATPase activity
BJD13_RS10255	COG2207	Transcriptional regulator
BJD13_RS10265	COG3152	Membrane
BJD13_RS10280	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BJD13_RS10285	COG1845	cytochrome c oxidase, subunit III
BJD13_RS10290	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BJD13_RS10305	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BJD13_RS10310	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BJD13_RS10315	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BJD13_RS10320	COG0196	riboflavin kinase activity
BJD13_RS10330	COG0268	Binds directly to 16S ribosomal RNA
BJD13_RS10335	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BJD13_RS10340	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BJD13_RS10345	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BJD13_RS10350	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BJD13_RS10355	COG0824	Thioesterase
BJD13_RS10365	COG1024	Enoyl-CoA hydratase
BJD13_RS10370	COG1946	Acyl-CoA thioesterase
BJD13_RS10380	COG1595	DNA-templated transcription, initiation
BJD13_RS10395	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
BJD13_RS10415	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BJD13_RS10440	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BJD13_RS10455	COG2197	response regulator
BJD13_RS10460	COG4585	Histidine kinase
BJD13_RS10475	COG0850	regulation of cytokinetic process
BJD13_RS10480	COG2894	cell division
BJD13_RS10485	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BJD13_RS10495	COG0642	Histidine kinase
BJD13_RS10500	COG0745	RESPONSE REGULATOR receiver
BJD13_RS10515	COG2194	sulfuric ester hydrolase activity
BJD13_RS10535	COG2814	Major facilitator Superfamily
BJD13_RS10560	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD13_RS10560	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD13_RS10565	COG2272	Belongs to the type-B carboxylesterase lipase family
BJD13_RS10570	COG0656	L-ascorbic acid biosynthetic process
BJD13_RS10575	COG0753	catalase activity
BJD13_RS10600	COG2207	Transcriptional regulator
BJD13_RS10600	COG1917	Cupin 2, conserved barrel domain protein
BJD13_RS10620	COG1506	peptidase
BJD13_RS10620	COG0823	Involved in the tonB-independent uptake of proteins
BJD13_RS10635	COG1297	OPT oligopeptide transporter protein
BJD13_RS10655	COG0587	DNA-directed DNA polymerase activity
BJD13_RS10670	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD13_RS10705	COG2080	2 iron, 2 sulfur cluster binding
BJD13_RS10710	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BJD13_RS10715	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD13_RS10740	COG0492	ferredoxin-NADP+ reductase activity
BJD13_RS10750	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS10760	COG3537	Alpha-1,2-mannosidase
BJD13_RS10765	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS10770	COG3387	PFAM Glycoside hydrolase 15-related
BJD13_RS10780	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD13_RS10825	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
BJD13_RS10855	COG1309	transcriptional regulator
BJD13_RS10860	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS10870	COG0308	aminopeptidase N
BJD13_RS10875	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BJD13_RS10885	COG0330	HflC and HflK could
BJD13_RS10890	COG0330	HflC and HflK could
BJD13_RS10910	COG0678	peroxiredoxin activity
BJD13_RS10920	COG4953	penicillin-binding protein 1C
BJD13_RS10940	COG2373	Large extracellular alpha-helical protein
BJD13_RS10985	COG3829	transcription factor binding
BJD13_RS11015	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BJD13_RS11020	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BJD13_RS11050	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD13_RS11055	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BJD13_RS11065	COG0424	maF-like protein
BJD13_RS11080	COG0714	Associated with various cellular activities
BJD13_RS11100	COG0537	adenosine 5'-monophosphoramidase activity
BJD13_RS11105	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BJD13_RS11110	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BJD13_RS11135	COG4680	protein conserved in bacteria
BJD13_RS11150	COG2801	Transposase and inactivated derivatives
BJD13_RS11155	COG2963	transposase activity
BJD13_RS11190	COG2003	Belongs to the UPF0758 family
BJD13_RS11275	COG0314	molybdopterin synthase activity
BJD13_RS11280	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BJD13_RS11285	COG0315	cyclic pyranopterin monophosphate synthase activity
BJD13_RS11295	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BJD13_RS11300	COG1234	tRNA 3'-trailer cleavage
BJD13_RS11305	COG3642	lipopolysaccharide core region biosynthetic process
BJD13_RS11310	COG0859	PFAM glycosyl transferase family 9
BJD13_RS11370	COG0631	protein serine/threonine phosphatase activity
BJD13_RS11375	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD13_RS11380	COG0328	RNA-DNA hybrid ribonuclease activity
BJD13_RS11390	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD13_RS11400	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD13_RS11430	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BJD13_RS11440	COG0544	peptidyl-prolyl cis-trans isomerase activity
BJD13_RS11450	COG3852	Histidine kinase
BJD13_RS11480	COG0473	3-isopropylmalate dehydrogenase activity
BJD13_RS11495	COG4783	chaperone-mediated protein folding
BJD13_RS11510	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BJD13_RS11520	COG0438	transferase activity, transferring glycosyl groups
BJD13_RS11525	COG0671	phosphoesterase, PA-phosphatase related
BJD13_RS11530	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD13_RS11540	COG3291	Pkd domain containing protein
BJD13_RS11545	COG2833	Protein of unknown function (DUF455)
BJD13_RS11570	COG0285	dihydrofolate synthase activity
BJD13_RS11575	COG0406	alpha-ribazole phosphatase activity
BJD13_RS11595	COG1063	alcohol dehydrogenase
BJD13_RS11610	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BJD13_RS11615	COG4208	sulfate ABC transporter
BJD13_RS11620	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BJD13_RS11625	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BJD13_RS11630	COG0156	8-amino-7-oxononanoate synthase activity
BJD13_RS11650	COG2885	chlorophyll binding
BJD13_RS11655	COG0604	alcohol dehydrogenase
BJD13_RS11660	COG0446	pyridine nucleotide-disulphide oxidoreductase
BJD13_RS11660	COG1902	pentaerythritol trinitrate reductase activity
BJD13_RS11680	COG0625	glutathione transferase activity
BJD13_RS11685	COG0039	L-malate dehydrogenase activity
BJD13_RS11690	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BJD13_RS11695	COG1217	gtp-binding protein TYPA
BJD13_RS11705	COG0154	amidase activity
BJD13_RS11715	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
BJD13_RS11735	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BJD13_RS11740	COG0203	ribosomal protein L17
BJD13_RS11765	COG0201	protein transport
BJD13_RS11770	COG0200	Binds to the 23S rRNA
BJD13_RS11775	COG1841	ribosomal large subunit assembly
BJD13_RS11785	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BJD13_RS11790	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BJD13_RS11795	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BJD13_RS11800	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BJD13_RS11805	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BJD13_RS11820	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BJD13_RS11825	COG0255	Belongs to the universal ribosomal protein uL29 family
BJD13_RS11830	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BJD13_RS11835	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BJD13_RS11845	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BJD13_RS11850	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BJD13_RS11860	COG0088	Forms part of the polypeptide exit tunnel
BJD13_RS11865	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BJD13_RS11870	COG0051	transcription antitermination factor activity, RNA binding
BJD13_RS11885	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD13_RS11890	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BJD13_RS11895	COG0049	tRNA binding
BJD13_RS11900	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BJD13_RS11905	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BJD13_RS11910	COG0085	RNA polymerase activity
BJD13_RS11915	COG0222	ribosome binding
BJD13_RS11920	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BJD13_RS11925	COG0081	regulation of translation
BJD13_RS11930	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BJD13_RS11935	COG0250	Participates in transcription elongation, termination and antitermination
BJD13_RS11950	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD13_RS11970	COG0012	GTP binding
BJD13_RS11975	COG0193	aminoacyl-tRNA hydrolase activity
BJD13_RS11980	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BJD13_RS11985	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BJD13_RS11995	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BJD13_RS12000	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BJD13_RS12010	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
BJD13_RS12015	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BJD13_RS12030	COG0521	Mo-molybdopterin cofactor biosynthetic process
BJD13_RS12045	COG1254	Belongs to the acylphosphatase family
BJD13_RS12050	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD13_RS12055	COG1295	ribonuclease BN
BJD13_RS12080	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BJD13_RS12085	COG1404	Belongs to the peptidase S8 family
BJD13_RS12090	COG1404	Belongs to the peptidase S8 family
BJD13_RS12095	COG1404	Belongs to the peptidase S8 family
BJD13_RS12100	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD13_RS12115	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BJD13_RS12140	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BJD13_RS12155	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD13_RS12155	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD13_RS12175	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD13_RS12185	COG3634	alkyl hydroperoxide reductase activity
BJD13_RS12190	COG0583	DNA-binding transcription factor activity
BJD13_RS12200	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD13_RS12205	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BJD13_RS12215	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD13_RS12225	COG2197	response regulator
BJD13_RS12235	COG0745	RESPONSE REGULATOR receiver
BJD13_RS12250	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD13_RS12260	COG0697	spore germination
BJD13_RS12285	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
BJD13_RS12295	COG3386	PFAM SMP-30 Gluconolaconase
BJD13_RS12315	COG1024	Enoyl-CoA hydratase
BJD13_RS12325	COG0318	PFAM AMP-dependent synthetase and ligase
BJD13_RS12330	COG0583	DNA-binding transcription factor activity
BJD13_RS12335	COG3384	dioxygenase
BJD13_RS12365	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD13_RS12370	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD13_RS12385	COG2096	Adenosyltransferase
BJD13_RS12390	COG0123	including yeast histone deacetylase and acetoin utilization protein
BJD13_RS12395	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BJD13_RS12400	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD13_RS12405	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BJD13_RS12410	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BJD13_RS12415	COG2967	ApaG domain
BJD13_RS12420	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BJD13_RS12435	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BJD13_RS12440	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BJD13_RS12460	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BJD13_RS12470	COG0642	Histidine kinase
BJD13_RS12485	COG4181	ATPase activity
BJD13_RS12495	COG2175	clavaminate synthase activity
BJD13_RS12505	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BJD13_RS12510	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD13_RS12530	COG4771	TonB-dependent receptor
BJD13_RS12540	COG0667	Aldo Keto reductase
BJD13_RS12550	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD13_RS12555	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD13_RS12565	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD13_RS12570	COG4106	trans-aconitate 2-methyltransferase activity
BJD13_RS12580	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BJD13_RS12620	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BJD13_RS12630	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BJD13_RS12635	COG2226	methyltransferase
BJD13_RS12665	COG0366	Alpha amylase catalytic
BJD13_RS12685	COG0604	alcohol dehydrogenase
BJD13_RS12685	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS12685	COG3321	synthase
BJD13_RS12700	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BJD13_RS12710	COG0494	nUDIX hydrolase
BJD13_RS12715	COG0653	protein targeting
BJD13_RS12720	COG0739	heme binding
BJD13_RS12730	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
BJD13_RS12745	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BJD13_RS12750	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD13_RS12755	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD13_RS12760	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BJD13_RS12770	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD13_RS12775	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BJD13_RS12780	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BJD13_RS12795	COG3116	cell division
BJD13_RS12800	COG0275	rRNA processing
BJD13_RS12840	COG0792	nuclease activity
BJD13_RS12845	COG1988	membrane-bound metal-dependent
BJD13_RS12850	COG0277	FAD linked oxidase domain protein
BJD13_RS12860	COG0745	RESPONSE REGULATOR receiver
BJD13_RS12865	COG2205	protein histidine kinase activity
BJD13_RS12875	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BJD13_RS12880	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BJD13_RS12910	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BJD13_RS12915	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD13_RS12920	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BJD13_RS12940	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD13_RS12940	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD13_RS12950	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BJD13_RS12955	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BJD13_RS12965	COG0488	(ABC) transporter
BJD13_RS12980	COG3791	Glutathione-dependent formaldehyde-activating
BJD13_RS13010	COG2205	protein histidine kinase activity
BJD13_RS13020	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BJD13_RS13050	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BJD13_RS13055	COG1012	belongs to the aldehyde dehydrogenase family
BJD13_RS13060	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
BJD13_RS13065	COG0617	tRNA 3'-terminal CCA addition
BJD13_RS13080	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BJD13_RS13085	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD13_RS13090	COG1609	Transcriptional regulator
BJD13_RS13100	COG2188	Transcriptional regulator
BJD13_RS13125	COG4795	General secretion pathway protein
BJD13_RS13145	COG1459	type II secretion system
BJD13_RS13200	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BJD13_RS13205	COG4191	Histidine kinase
BJD13_RS13210	COG0784	Response regulator, receiver
BJD13_RS13215	COG4251	negative regulation of phosphorylation
BJD13_RS13220	COG2823	Periplasmic or secreted lipoprotein
BJD13_RS13225	COG0673	inositol 2-dehydrogenase activity
BJD13_RS13230	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
BJD13_RS13265	COG1056	cytidyltransferase-related domain
BJD13_RS13265	COG1051	belongs to the nudix hydrolase family
BJD13_RS13275	COG0583	DNA-binding transcription factor activity
BJD13_RS13290	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BJD13_RS13295	COG0321	lipoyl(octanoyl) transferase activity
BJD13_RS13300	COG2921	Belongs to the UPF0250 family
BJD13_RS13310	COG1686	Belongs to the peptidase S11 family
BJD13_RS13320	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BJD13_RS13325	COG2951	lytic endotransglycosylase activity
BJD13_RS13340	COG0772	Belongs to the SEDS family
BJD13_RS13355	COG1792	Involved in formation and maintenance of cell shape
BJD13_RS13360	COG1077	Cell shape determining protein MreB Mrl
BJD13_RS13365	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD13_RS13370	COG3284	Transcriptional regulator
BJD13_RS13380	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
BJD13_RS13420	COG0308	aminopeptidase N
BJD13_RS13425	COG3300	MHYT domain
BJD13_RS13425	COG5001	Diguanylate cyclase
BJD13_RS13455	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BJD13_RS13460	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BJD13_RS13465	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BJD13_RS13475	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BJD13_RS13485	COG2832	Protein of unknown function (DUF454)
BJD13_RS13495	COG0436	Aminotransferase
BJD13_RS13500	COG1505	serine-type exopeptidase activity
BJD13_RS13540	COG0181	hydroxymethylbilane synthase activity
BJD13_RS13550	COG3275	phosphorelay sensor kinase activity
BJD13_RS13560	COG2943	transferase activity, transferring hexosyl groups
BJD13_RS13580	COG0659	secondary active sulfate transmembrane transporter activity
BJD13_RS13585	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD13_RS13585	COG5297	Belongs to the glycosyl hydrolase family 6
BJD13_RS13590	COG0840	transmembrane signaling receptor activity
BJD13_RS13625	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
BJD13_RS13640	COG0598	Magnesium transport protein CorA
BJD13_RS13650	COG1113	amino acid transport
BJD13_RS13670	COG0697	spore germination
BJD13_RS13695	COG1959	2 iron, 2 sulfur cluster binding
BJD13_RS13750	COG0435	Glutathione S-transferase
BJD13_RS13760	COG4221	oxidoreductase activity
BJD13_RS13815	COG2963	transposase activity
BJD13_RS13820	COG2801	Transposase and inactivated derivatives
BJD13_RS13955	COG0546	phosphoglycolate phosphatase activity
BJD13_RS13960	COG1802	Transcriptional regulator
BJD13_RS13970	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BJD13_RS13995	COG3052	prosthetic group binding
BJD13_RS14020	COG2353	YceI-like domain
BJD13_RS14025	COG0778	Nitroreductase
BJD13_RS14055	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD13_RS14060	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BJD13_RS14070	COG3386	PFAM SMP-30 Gluconolaconase
BJD13_RS14085	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD13_RS14100	COG0459	protein refolding
BJD13_RS14115	COG2356	endonuclease I
BJD13_RS14125	COG1324	tolerance protein
BJD13_RS14135	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BJD13_RS14140	COG0511	ligase activity, forming carbon-carbon bonds
BJD13_RS14150	COG0439	Biotin carboxylase
BJD13_RS14170	COG2264	protein methyltransferase activity
BJD13_RS14195	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BJD13_RS14200	COG4589	Belongs to the CDS family
BJD13_RS14225	COG0671	phosphoesterase, PA-phosphatase related
BJD13_RS14225	COG2453	phosphatase
BJD13_RS14230	COG2267	carboxylic ester hydrolase activity
BJD13_RS14235	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD13_RS14240	COG0138	bifunctional purine biosynthesis protein purh
BJD13_RS14250	COG0151	Belongs to the GarS family
BJD13_RS14255	COG1289	transmembrane transporter activity
BJD13_RS14260	COG2814	Major facilitator Superfamily
BJD13_RS14285	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD13_RS14305	COG0316	Belongs to the HesB IscA family
BJD13_RS14345	COG1051	belongs to the nudix hydrolase family
BJD13_RS14360	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BJD13_RS14370	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
BJD13_RS14380	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
BJD13_RS14385	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD13_RS14395	COG0134	indole-3-glycerol-phosphate synthase activity
BJD13_RS14400	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BJD13_RS14430	COG1597	lipid kinase activity
BJD13_RS14435	COG0456	acetyltransferase
BJD13_RS14445	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BJD13_RS14450	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BJD13_RS14470	COG3179	chitinase
BJD13_RS14490	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BJD13_RS14490	COG2111	Na H antiporter
BJD13_RS14495	COG1006	Multisubunit Na H antiporter MnhC subunit
BJD13_RS14500	COG0651	ATP synthesis coupled electron transport
BJD13_RS14510	COG2212	antiporter activity
BJD13_RS14515	COG1320	monovalent cation:proton antiporter activity
BJD13_RS14530	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
BJD13_RS14535	COG2852	Protein conserved in bacteria
BJD13_RS14555	COG3104	oligopeptide transport
BJD13_RS14560	COG3483	tryptophan 2,3-dioxygenase activity
BJD13_RS14570	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BJD13_RS14585	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD13_RS14600	COG0513	Belongs to the DEAD box helicase family
BJD13_RS14615	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS14620	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_RS14655	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS14660	COG0702	epimerase
BJD13_RS14685	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD13_RS14690	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD13_RS14695	COG0297	glycogen (starch) synthase activity
BJD13_RS14705	COG2354	Protein conserved in bacteria
BJD13_RS14715	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD13_RS14725	COG1368	sulfuric ester hydrolase activity
BJD13_RS14730	COG1511	domain protein
BJD13_RS14730	COG3264	Mechanosensitive ion channel
BJD13_RS14760	COG2801	Transposase and inactivated derivatives
BJD13_RS14765	COG2963	transposase activity
BJD13_RS14830	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BJD13_RS14910	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BJD13_RS14915	COG1040	competence protein
BJD13_RS14920	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BJD13_RS14925	COG0156	8-amino-7-oxononanoate synthase activity
BJD13_RS14935	COG2267	carboxylic ester hydrolase activity
BJD13_RS14940	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS14965	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BJD13_RS14980	COG0445	tRNA wobble uridine modification
BJD13_RS14990	COG0657	acetylesterase activity
BJD13_RS15000	COG1414	Transcriptional regulator
BJD13_RS15015	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BJD13_RS15020	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD13_RS15030	COG3485	protocatechuate 3,4-dioxygenase
BJD13_RS15035	COG3485	protocatechuate 3,4-dioxygenase
BJD13_RS15045	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BJD13_RS15050	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BJD13_RS15075	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BJD13_RS15080	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BJD13_RS15135	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BJD13_RS15150	COG0129	dihydroxy-acid dehydratase activity
BJD13_RS15170	COG2801	Transposase and inactivated derivatives
BJD13_RS15175	COG2963	transposase activity
BJD13_RS15240	COG1733	regulation of RNA biosynthetic process
BJD13_RS15245	COG0702	epimerase
BJD13_RS15280	COG0583	DNA-binding transcription factor activity
BJD13_RS15285	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD13_RS15310	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_RS15315	COG2205	protein histidine kinase activity
BJD13_RS15320	COG0745	RESPONSE REGULATOR receiver
BJD13_RS15340	COG1902	pentaerythritol trinitrate reductase activity
BJD13_RS15345	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BJD13_RS15350	COG2267	carboxylic ester hydrolase activity
BJD13_RS15360	COG2814	Major facilitator Superfamily
BJD13_RS15365	COG0583	DNA-binding transcription factor activity
BJD13_RS15380	COG0084	hydrolase, TatD family'
BJD13_RS15405	COG2252	PERMEase
BJD13_RS15445	COG0583	DNA-binding transcription factor activity
BJD13_RS15455	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BJD13_RS15475	COG2072	flavoprotein involved in K transport
BJD13_RS15485	COG4807	Protein conserved in bacteria
BJD13_RS15495	COG1643	Atp-dependent helicase
BJD13_RS15505	COG1187	pseudouridine synthase activity
BJD13_RS15520	COG2130	NADP-dependent
BJD13_RS15540	COG1764	response to oxidative stress
BJD13_RS15545	COG1846	Transcriptional regulator
BJD13_RS15550	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BJD13_RS15560	COG0697	spore germination
BJD13_RS15570	COG0523	cobalamin synthesis protein
BJD13_RS15630	COG1960	acyl-CoA dehydrogenase activity
BJD13_RS15635	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BJD13_RS15640	COG4770	biotin carboxylase activity
BJD13_RS15670	COG2224	Isocitrate lyase
BJD13_RS15675	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BJD13_RS15680	COG0583	DNA-binding transcription factor activity
BJD13_RS15685	COG0475	glutathione-regulated potassium exporter activity
BJD13_RS15715	COG0339	signal peptide processing
BJD13_RS15720	COG1446	asparaginase
BJD13_RS15740	COG0564	pseudouridine synthase activity
BJD13_RS15750	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD13_RS15760	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD13_RS15770	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD13_RS15775	COG0318	PFAM AMP-dependent synthetase and ligase
BJD13_RS15780	COG0727	PFAM Uncharacterised protein family (UPF0153)
BJD13_RS15785	COG0596	Alpha beta hydrolase
BJD13_RS15790	COG3177	Filamentation induced by cAMP protein fic
BJD13_RS15795	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD13_RS15810	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BJD13_RS15835	COG4191	Histidine kinase
BJD13_RS15840	COG0028	Belongs to the TPP enzyme family
BJD13_RS15855	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BJD13_RS15860	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
BJD13_RS15865	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BJD13_RS15900	COG0183	Belongs to the thiolase family
BJD13_RS15915	COG2032	superoxide dismutase activity
BJD13_RS15920	COG2032	superoxide dismutase activity
BJD13_RS15925	COG2204	response regulator
BJD13_RS15930	COG3852	Histidine kinase
BJD13_RS15935	COG0004	ammonium transporteR
BJD13_RS15940	COG0347	Belongs to the P(II) protein family
BJD13_RS15945	COG0174	glutamine synthetase
BJD13_RS15955	COG1968	undecaprenyl-diphosphatase activity
BJD13_RS16000	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD13_RS16010	COG2062	phosphohistidine phosphatase, SixA
BJD13_RS16015	COG0489	protein tyrosine kinase activity
BJD13_RS16055	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD13_RS16070	COG1125	glycine betaine transport
BJD13_RS16085	COG1119	ATPase activity
BJD13_RS16095	COG1473	amidohydrolase
BJD13_RS16100	COG1752	Esterase of the alpha-beta hydrolase superfamily
BJD13_RS16110	COG1522	sequence-specific DNA binding
BJD13_RS16115	COG3186	Phenylalanine-4-hydroxylase
BJD13_RS16125	COG2755	lipolytic protein G-D-S-L family
BJD13_RS16135	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS16140	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
BJD13_RS16145	COG1609	Transcriptional regulator
BJD13_RS16150	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD13_RS16165	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BJD13_RS16175	COG0657	acetylesterase activity
BJD13_RS16175	COG2755	lipolytic protein G-D-S-L family
BJD13_RS16180	COG2272	Belongs to the type-B carboxylesterase lipase family
BJD13_RS16200	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD13_RS16205	COG0366	Alpha amylase catalytic
BJD13_RS16210	COG0366	Alpha amylase catalytic
BJD13_RS16285	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD13_RS16295	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BJD13_RS16300	COG3710	Transcriptional regulator
BJD13_RS16320	COG2197	response regulator
BJD13_RS16325	COG4585	Histidine kinase
BJD13_RS16330	COG1755	Isoprenylcysteine carboxyl methyltransferase
BJD13_RS16345	COG1304	FMN binding
BJD13_RS16370	COG1012	belongs to the aldehyde dehydrogenase family
BJD13_RS16385	COG4772	TonB-dependent receptor
BJD13_RS16395	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
BJD13_RS16445	COG0714	Associated with various cellular activities
BJD13_RS16485	COG0477	Major facilitator Superfamily
BJD13_RS16495	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD13_RS16540	COG3237	CsbD-like
BJD13_RS16585	COG2249	NAD(P)H dehydrogenase (quinone) activity
BJD13_RS16600	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS16605	COG0300	oxidoreductase activity
BJD13_RS16625	COG1272	protein, Hemolysin III
BJD13_RS16630	COG1205	dead DEAH box helicase
BJD13_RS16630	COG1111	helicase
BJD13_RS16720	COG0069	glutamate synthase activity
BJD13_RS16720	COG0070	glutamate synthase
BJD13_RS16720	COG0067	glutamate synthase
BJD13_RS16725	COG0493	'glutamate synthase
BJD13_RS16735	COG1064	alcohol dehydrogenase
BJD13_RS16745	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD13_RS16750	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD13_RS16755	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD13_RS16765	COG2234	aminopeptidase activity
BJD13_RS16775	COG4942	peptidase
BJD13_RS16780	COG0793	Belongs to the peptidase S41A family
BJD13_RS16825	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD13_RS16835	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BJD13_RS16870	COG0501	Belongs to the peptidase M48B family
BJD13_RS16880	COG0187	DNA topoisomerase II activity
BJD13_RS16885	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BJD13_RS16895	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BJD13_RS16910	COG0594	ribonuclease P activity
BJD13_RS16915	COG0706	membrane insertase activity
BJD13_RS16920	COG0726	polysaccharide deacetylase
BJD13_RS16925	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BJD13_RS16940	COG0584	glycerophosphoryl diester phosphodiesterase
BJD13_RS16955	COG0861	Integral membrane protein TerC family
BJD13_RS16960	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD13_RS16975	COG2271	Major facilitator Superfamily
BJD13_RS16980	COG1929	Belongs to the glycerate kinase type-1 family
BJD13_RS16985	COG3835	regulator
BJD13_RS16990	COG2203	Gaf domain
BJD13_RS16990	COG2199	diguanylate cyclase activity
BJD13_RS17005	COG3537	Alpha-1,2-mannosidase
BJD13_RS17010	COG0531	amino acid
BJD13_RS17035	COG0604	alcohol dehydrogenase
BJD13_RS17040	COG1322	Protein conserved in bacteria
BJD13_RS17050	COG0386	Belongs to the glutathione peroxidase family
BJD13_RS17060	COG2853	Lipoprotein
BJD13_RS17075	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD13_RS17080	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD13_RS17085	COG1127	ABC transporter
BJD13_RS17120	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BJD13_RS17125	COG1074	ATP-dependent DNA helicase activity
BJD13_RS17135	COG3549	Plasmid maintenance system killer
BJD13_RS17185	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS17195	COG1309	transcriptional regulator
BJD13_RS17240	COG0564	pseudouridine synthase activity
BJD13_RS17300	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD13_RS17310	COG4221	oxidoreductase activity
BJD13_RS17315	COG0583	DNA-binding transcription factor activity
BJD13_RS17325	COG0477	Major facilitator Superfamily
BJD13_RS17330	COG1289	transmembrane transporter activity
BJD13_RS17340	COG1566	PFAM secretion protein HlyD family protein
BJD13_RS17355	COG0302	gtp cyclohydrolase
BJD13_RS17375	COG0730	response to heat
BJD13_RS17380	COG3012	SEC-C Motif Domain Protein
BJD13_RS17390	COG0676	glucose-6-phosphate 1-epimerase activity
BJD13_RS17410	COG3135	benzoate transporter
BJD13_RS17440	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BJD13_RS17450	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
BJD13_RS17460	COG1435	thymidine kinase activity
BJD13_RS17465	COG0210	DNA helicase
BJD13_RS17480	COG3132	Protein of unknown function, DUF480
BJD13_RS17490	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
BJD13_RS17495	COG0284	orotidine-5'-phosphate decarboxylase activity
BJD13_RS17525	COG2937	Belongs to the GPAT DAPAT family
BJD13_RS17570	COG2211	Major facilitator Superfamily
BJD13_RS17585	COG3693	PFAM glycoside hydrolase, family 10
BJD13_RS17595	COG3693	PFAM glycoside hydrolase, family 10
BJD13_RS17600	COG1904	glucuronate isomerase
BJD13_RS17605	COG3250	beta-galactosidase activity
BJD13_RS17615	COG3386	PFAM SMP-30 Gluconolaconase
BJD13_RS17640	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BJD13_RS17690	COG0246	Mannitol dehydrogenase
BJD13_RS17695	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD13_RS17705	COG4948	Mandelate Racemase Muconate Lactonizing
BJD13_RS17715	COG3661	Belongs to the glycosyl hydrolase 67 family
BJD13_RS17725	COG2115	Belongs to the xylose isomerase family
BJD13_RS17730	COG0037	tRNA processing
BJD13_RS17735	COG2974	May be involved in recombination
BJD13_RS17755	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BJD13_RS17765	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD13_RS17770	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD13_RS17775	COG0805	protein transport
BJD13_RS17785	COG0519	Catalyzes the synthesis of GMP from XMP
BJD13_RS17785	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD13_RS17800	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD13_RS17805	COG0752	glycyl-tRNA synthetase alpha subunit
BJD13_RS17815	COG0457	Tetratricopeptide repeat
BJD13_RS17825	COG4771	TonB-dependent receptor
BJD13_RS17830	COG0729	surface antigen
BJD13_RS17835	COG2911	Protein conserved in bacteria
BJD13_RS17860	COG3209	COG3209 Rhs family protein
BJD13_RS17865	COG2963	transposase activity
BJD13_RS17875	COG3039	Transposase
BJD13_RS17895	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD13_RS17905	COG3265	gluconokinase activity
BJD13_RS17910	COG2211	Major facilitator Superfamily
BJD13_RS17915	COG3459	Glycosyltransferase 36 associated
BJD13_RS17930	COG2205	protein histidine kinase activity
BJD13_RS17935	COG1971	Probably functions as a manganese efflux pump
BJD13_RS17945	COG1414	Transcriptional regulator
BJD13_RS17950	COG0738	Major facilitator superfamily
BJD13_RS17955	COG3254	rhamnose metabolic process
BJD13_RS17960	COG4948	Mandelate Racemase Muconate Lactonizing
BJD13_RS17970	COG0179	Fumarylacetoacetate (FAA) hydrolase
BJD13_RS17975	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS17995	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD13_RS18030	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BJD13_RS18040	COG3162	membrane
BJD13_RS18045	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BJD13_RS18055	COG0708	Exodeoxyribonuclease III
BJD13_RS18070	COG2091	lysine biosynthetic process via aminoadipic acid
BJD13_RS18080	COG3540	Alkaline phosphatase
BJD13_RS18085	COG0357	Ribosomal RNA small subunit methyltransferase G
BJD13_RS18110	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_RS18135	COG2159	amidohydrolase
BJD13_RS18150	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD13_RS18155	COG0583	DNA-binding transcription factor activity
BJD13_RS18160	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD13_RS18175	COG0210	DNA helicase
BJD13_RS18335	COG0583	DNA-binding transcription factor activity
BJD13_RS18340	COG0667	Aldo Keto reductase
BJD13_RS18365	COG0631	protein serine/threonine phosphatase activity
BJD13_RS18370	COG0515	serine threonine protein kinase
BJD13_RS18405	COG0408	coproporphyrinogen oxidase activity
BJD13_RS18450	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD13_RS18465	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD13_RS18505	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS18525	COG0463	Glycosyl transferase, family 2
BJD13_RS18535	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BJD13_RS18540	COG3100	YcgL domain-containing protein
BJD13_RS18550	COG3387	PFAM Glycoside hydrolase 15-related
BJD13_RS18555	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD13_RS18580	COG2239	Acts as a magnesium transporter
BJD13_RS18585	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD13_RS18585	COG1042	CoA-binding domain protein
BJD13_RS18585	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD13_RS18600	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD13_RS18610	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD13_RS18615	COG0716	FMN binding
BJD13_RS18640	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BJD13_RS18645	COG0842	Transport permease protein
BJD13_RS18650	COG1131	(ABC) transporter
BJD13_RS18655	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD13_RS18680	COG1476	TRANSCRIPTIONal
BJD13_RS18690	COG4555	ABC transporter
BJD13_RS18725	COG0625	glutathione transferase activity
BJD13_RS18775	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BJD13_RS18790	COG1199	ATP-dependent helicase activity
BJD13_RS18825	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD13_RS18870	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
BJD13_RS18870	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
BJD13_RS18875	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
BJD13_RS18890	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BJD13_RS18930	COG3237	CsbD-like
BJD13_RS18935	COG0180	Tryptophanyl-tRNA synthetase
BJD13_RS18940	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD13_RS18960	COG0697	spore germination
BJD13_RS18985	COG1136	(ABC) transporter
BJD13_RS18990	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_RS18995	COG4585	Histidine kinase
BJD13_RS19000	COG2197	response regulator
BJD13_RS19015	COG0753	catalase activity
BJD13_RS19030	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD13_RS19035	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD13_RS19060	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD13_RS19080	COG0642	Histidine kinase
BJD13_RS19090	COG1090	epimerase
BJD13_RS19125	COG1690	Belongs to the RtcB family
BJD13_RS19160	COG4943	cyclic-guanylate-specific phosphodiesterase activity
BJD13_RS19175	COG0606	chelatase, subunit chli
BJD13_RS19195	COG3291	Pkd domain containing protein
BJD13_RS19195	COG3525	Glycosyl hydrolase, family 20, catalytic domain
BJD13_RS19215	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BJD13_RS19220	COG1166	arginine decarboxylase activity
BJD13_RS19225	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BJD13_RS19235	COG2755	lipolytic protein G-D-S-L family
BJD13_RS19235	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BJD13_RS19240	COG4221	oxidoreductase activity
BJD13_RS19255	COG0018	arginyl-trna synthetase
BJD13_RS19260	COG2003	Belongs to the UPF0758 family
BJD13_RS19265	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BJD13_RS19270	COG0756	dUTP diphosphatase activity
BJD13_RS19290	COG0463	Glycosyl transferase, family 2
BJD13_RS19305	COG1475	DNA binding
BJD13_RS19310	COG1192	Involved in chromosome partitioning
BJD13_RS19320	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BJD13_RS19325	COG0708	Exodeoxyribonuclease III
BJD13_RS19330	COG2211	Major facilitator Superfamily
BJD13_RS19340	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BJD13_RS19345	COG0739	heme binding
BJD13_RS19350	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BJD13_RS19390	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BJD13_RS19405	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
BJD13_RS19435	COG0109	protoheme IX farnesyltransferase activity
BJD13_RS19450	COG0358	DNA primase activity
BJD13_RS19455	COG1295	ribonuclease BN
BJD13_RS19465	COG1610	YqeY-like protein
BJD13_RS19475	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BJD13_RS19480	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BJD13_RS19490	COG2133	pyrroloquinoline quinone binding
BJD13_RS19495	COG4682	membrane
BJD13_RS19510	COG0531	amino acid
BJD13_RS19520	COG4948	Mandelate Racemase Muconate Lactonizing
BJD13_RS19530	COG3023	N-Acetylmuramoyl-L-alanine amidase
BJD13_RS19535	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
BJD13_RS19580	COG5383	Protein conserved in bacteria
BJD13_RS19590	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_RS19595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_RS19600	COG1473	amidohydrolase
BJD13_RS19605	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD13_RS19605	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD13_RS19610	COG1652	LysM domain
BJD13_RS19630	COG0583	DNA-binding transcription factor activity
BJD13_RS19635	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
BJD13_RS19650	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BJD13_RS19655	COG3118	belongs to the thioredoxin family
BJD13_RS19665	COG2884	Cell division ATP-binding protein ftsE
BJD13_RS19670	COG2177	Part of the ABC transporter FtsEX involved in
BJD13_RS19675	COG3437	response regulator, receiver
BJD13_RS19680	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BJD13_RS19685	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD13_RS19690	COG2860	membrane
BJD13_RS19695	COG1252	NADH dehydrogenase
BJD13_RS19710	COG0625	glutathione transferase activity
BJD13_RS19715	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BJD13_RS19735	COG0534	Mate efflux family protein
BJD13_RS19740	COG0616	signal peptide processing
BJD13_RS19755	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS19770	COG0009	L-threonylcarbamoyladenylate synthase
BJD13_RS19775	COG1754	DNA topoisomerase type I activity
BJD13_RS19775	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD13_RS19795	COG0758	DNA mediated transformation
BJD13_RS19800	COG1652	LysM domain
BJD13_RS19805	COG0242	peptide deformylase activity
BJD13_RS19810	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BJD13_RS19815	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD13_RS19815	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BJD13_RS19865	COG1560	Kdo2-lipid A biosynthetic process
BJD13_RS19870	COG1490	D-aminoacyl-tRNA deacylase activity
BJD13_RS19875	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD13_RS20115	COG4695	Portal protein
BJD13_RS20145	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS20160	COG0024	Methionine aminopeptidase
BJD13_RS20170	COG0038	chloride channel
BJD13_RS20175	COG0659	secondary active sulfate transmembrane transporter activity
BJD13_RS20205	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD13_RS20210	COG0583	DNA-binding transcription factor activity
BJD13_RS20230	COG0251	oxidation-reduction process
BJD13_RS20305	COG1063	alcohol dehydrogenase
BJD13_RS20320	COG1132	(ABC) transporter
BJD13_RS20340	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BJD13_RS20345	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS20360	COG1294	oxidase, subunit
BJD13_RS20365	COG1271	oxidase subunit
BJD13_RS20380	COG2204	response regulator
BJD13_RS20415	COG3546	catalase activity
BJD13_RS20420	COG3685	Protein conserved in bacteria
BJD13_RS20440	COG2972	Histidine kinase
BJD13_RS20455	COG0531	amino acid
BJD13_RS20470	COG3590	peptidase
BJD13_RS20485	COG0667	Aldo Keto reductase
BJD13_RS20495	COG0583	DNA-binding transcription factor activity
BJD13_RS20500	COG3384	dioxygenase
BJD13_RS20510	COG1573	uracil-dna glycosylase
BJD13_RS20515	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
BJD13_RS20525	COG0025	NhaP-type Na H and K H
BJD13_RS20530	COG1131	(ABC) transporter
BJD13_RS20535	COG0842	Transport permease protein
BJD13_RS20590	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD13_RS20595	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BJD13_RS20615	COG2205	protein histidine kinase activity
BJD13_RS20615	COG2202	Pas domain
BJD13_RS20635	COG2813	Specifically methylates the guanine in position
BJD13_RS20640	COG1187	pseudouridine synthase activity
BJD13_RS20645	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD13_RS20670	COG0784	Response regulator, receiver
BJD13_RS20670	COG2198	Histidine kinase
BJD13_RS20670	COG5002	protein histidine kinase activity
BJD13_RS20680	COG1666	GTP binding
BJD13_RS20685	COG0697	spore germination
BJD13_RS20690	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BJD13_RS20695	COG2011	ABC-type metal ion transport system permease component
BJD13_RS20735	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD13_RS20745	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD13_RS20765	COG0356	it plays a direct role in the translocation of protons across the membrane
BJD13_RS20775	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BJD13_RS20780	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BJD13_RS20785	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BJD13_RS20790	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BJD13_RS20795	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BJD13_RS20800	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BJD13_RS20815	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BJD13_RS20820	COG4191	Histidine kinase
BJD13_RS20835	COG0577	efflux transmembrane transporter activity
BJD13_RS20840	COG0577	efflux transmembrane transporter activity
BJD13_RS20845	COG1136	(ABC) transporter
BJD13_RS20850	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_RS20855	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD13_RS20905	COG0339	signal peptide processing
BJD13_RS20920	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD13_RS20930	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BJD13_RS20945	COG1956	GAF domain-containing protein
BJD13_RS20950	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
BJD13_RS20960	COG0720	synthase
BJD13_RS20965	COG0513	Belongs to the DEAD box helicase family
BJD13_RS20980	COG0625	glutathione transferase activity
BJD13_RS21010	COG0626	cystathionine gamma-synthase activity
BJD13_RS21040	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD13_RS21050	COG0277	FAD linked oxidase domain protein
BJD13_RS21055	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BJD13_RS21055	COG0546	phosphoglycolate phosphatase activity
BJD13_RS21070	COG2086	electron transfer activity
BJD13_RS21100	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
BJD13_RS21100	COG0662	Cupin 2, conserved barrel domain protein
BJD13_RS21105	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD13_RS21110	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BJD13_RS21150	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD13_RS21150	COG3218	ABC-type transport auxiliary lipoprotein component
BJD13_RS21155	COG1127	ABC transporter
BJD13_RS21160	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD13_RS21175	COG0442	prolyl-tRNA aminoacylation
BJD13_RS21185	COG1183	phosphatidylcholine synthase activity
BJD13_RS21215	COG0525	valine-tRNA ligase activity
BJD13_RS21230	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD13_RS21240	COG0795	lipopolysaccharide-transporting ATPase activity
BJD13_RS21255	COG4974	Belongs to the 'phage' integrase family
BJD13_RS21265	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD13_RS21275	COG0047	phosphoribosylformylglycinamidine synthase activity
BJD13_RS21275	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BJD13_RS21280	COG5295	Hep Hag repeat protein
BJD13_RS21285	COG1404	Belongs to the peptidase S8 family
BJD13_RS21290	COG5295	Hep Hag repeat protein
BJD13_RS21295	COG1404	Belongs to the peptidase S8 family
BJD13_RS21300	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD13_RS21310	COG1459	type II secretion system
BJD13_RS21315	COG2165	general secretion pathway protein
BJD13_RS21320	COG4970	Tfp pilus assembly protein FimT
BJD13_RS21325	COG2165	general secretion pathway protein
BJD13_RS21330	COG4795	General secretion pathway protein
BJD13_RS21335	COG3156	type II secretion system protein K
BJD13_RS21340	COG3166	PFAM Fimbrial assembly family protein
BJD13_RS21355	COG1450	Type ii and iii secretion system protein
BJD13_RS21365	COG2188	Transcriptional regulator
BJD13_RS21410	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BJD13_RS21425	COG1215	transferase activity, transferring glycosyl groups
BJD13_RS21430	COG1215	transferase activity, transferring glycosyl groups
BJD13_RS21435	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BJD13_RS21440	COG0457	Tetratricopeptide repeat
BJD13_RS21470	COG0242	peptide deformylase activity
BJD13_RS21475	COG1307	EDD domain protein, DegV family
BJD13_RS21500	COG0402	S-adenosylhomocysteine deaminase activity
BJD13_RS21505	COG3964	amidohydrolase
BJD13_RS21520	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD13_RS21525	COG0726	polysaccharide deacetylase
BJD13_RS21540	COG0436	Aminotransferase
BJD13_RS21545	COG1162	GTPase activity
BJD13_RS21570	COG2211	Major facilitator Superfamily
BJD13_RS21575	COG1609	Transcriptional regulator
BJD13_RS21580	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS21585	COG2851	Citrate transporter
BJD13_RS21605	COG0642	Histidine kinase
BJD13_RS21615	COG2197	response regulator
BJD13_RS21630	COG0667	Aldo Keto reductase
BJD13_RS21635	COG0583	DNA-binding transcription factor activity
BJD13_RS21660	COG1301	dicarboxylic acid transport
BJD13_RS21665	COG0281	malic enzyme
BJD13_RS21665	COG0280	phosphate acetyltransferase
BJD13_RS21690	COG1560	Kdo2-lipid A biosynthetic process
BJD13_RS21700	COG1519	Transferase
BJD13_RS21705	COG1538	Outer membrane efflux protein
BJD13_RS21710	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD13_RS21730	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
BJD13_RS21735	COG0066	3-isopropylmalate dehydratase activity
BJD13_RS21740	COG0473	3-isopropylmalate dehydrogenase activity
BJD13_RS21745	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BJD13_RS21765	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BJD13_RS21770	COG0405	Gamma-glutamyltransferase
BJD13_RS21790	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
BJD13_RS21795	COG3710	Transcriptional regulator
BJD13_RS21815	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BJD13_RS21825	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
BJD13_RS21840	COG0563	adenylate kinase activity
BJD13_RS21845	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD13_RS21855	COG3781	membrane
BJD13_RS21860	COG0671	phosphoesterase, PA-phosphatase related
BJD13_RS21870	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_RS21875	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD13_RS21880	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BJD13_RS21910	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD13_RS21915	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
BJD13_RS21930	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BJD13_RS21950	COG0352	thiamine-phosphate diphosphorylase activity
BJD13_RS21955	COG1773	rubredoxin
BJD13_RS21960	COG2912	Transglutaminase-like superfamily
BJD13_RS21970	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BJD13_RS21980	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BJD13_RS22000	COG3079	Belongs to the UPF0149 family
BJD13_RS22005	COG0006	proline dipeptidase activity
BJD13_RS22015	COG0006	proline dipeptidase activity
BJD13_RS22030	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BJD13_RS22035	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BJD13_RS22045	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BJD13_RS22050	COG1561	YicC-like family, N-terminal region
BJD13_RS22055	COG0194	GDP metabolic process
BJD13_RS22065	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD13_RS22075	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD13_RS22080	COG1957	nucleoside hydrolase
BJD13_RS22100	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BJD13_RS22130	COG0714	Associated with various cellular activities
BJD13_RS22150	COG2304	oxidoreductase activity
BJD13_RS22165	COG1301	dicarboxylic acid transport
BJD13_RS22170	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BJD13_RS22175	COG4773	Receptor
BJD13_RS22180	COG0739	heme binding
BJD13_RS22185	COG1376	ErfK ybiS ycfS ynhG family protein
BJD13_RS22220	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
BJD13_RS22225	COG4149	molybdate abc transporter
BJD13_RS22230	COG0725	ABC transporter, periplasmic molybdate-binding protein
BJD13_RS22245	COG3047	cAMP biosynthetic process
BJD13_RS22260	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD13_RS22280	COG0126	phosphoglycerate kinase activity
BJD13_RS22290	COG0469	pyruvate kinase activity
BJD13_RS22295	COG3588	fructose-bisphosphate aldolase
BJD13_RS22300	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
BJD13_RS22315	COG1648	precorrin-2 dehydrogenase activity
BJD13_RS22315	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD13_RS22340	COG0784	Response regulator, receiver
BJD13_RS22340	COG2205	protein histidine kinase activity
BJD13_RS22340	COG2198	Histidine kinase
BJD13_RS22360	COG0175	sulfate reduction
BJD13_RS22365	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD13_RS22370	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD13_RS22375	COG0175	sulfate reduction
BJD13_RS22380	COG0529	Catalyzes the synthesis of activated sulfate
BJD13_RS22380	COG2895	sulfate adenylyltransferase (ATP) activity
BJD13_RS22395	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_RS22400	COG0308	aminopeptidase N
BJD13_RS22415	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD13_RS22430	COG4948	Mandelate Racemase Muconate Lactonizing
BJD13_RS22435	COG3250	beta-galactosidase activity
BJD13_RS22445	COG1609	Transcriptional regulator
BJD13_RS22455	COG1970	mechanosensitive ion channel activity
BJD13_RS22480	COG3273	potassium ion transport
BJD13_RS22480	COG0471	metal ion transport
BJD13_RS22485	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BJD13_RS22490	COG2022	thiamine diphosphate biosynthetic process
BJD13_RS22535	COG0189	ligase activity
BJD13_RS22545	COG0745	RESPONSE REGULATOR receiver
BJD13_RS22555	COG0237	dephospho-CoA kinase activity
BJD13_RS22560	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BJD13_RS22620	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD13_RS22625	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BJD13_RS22640	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD13_RS22640	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BJD13_RS22650	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD13_RS22655	COG0564	pseudouridine synthase activity
BJD13_RS22670	COG3011	Protein conserved in bacteria
BJD13_RS22675	COG0840	transmembrane signaling receptor activity
BJD13_RS22690	COG3387	PFAM Glycoside hydrolase 15-related
BJD13_RS22695	COG1877	trehalose-phosphatase activity
BJD13_RS22740	COG1116	anion transmembrane transporter activity
BJD13_RS22745	COG1116	anion transmembrane transporter activity
BJD13_RS22750	COG0542	response to heat
BJD13_RS22755	COG4206	TonB-dependent receptor
BJD13_RS22775	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD13_RS22785	COG1492	cobalamin metabolic process
BJD13_RS22795	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
BJD13_RS22820	COG0019	diaminopimelate decarboxylase activity
BJD13_RS22830	COG2814	Major facilitator Superfamily
BJD13_RS22835	COG4264	IucA IucC family
BJD13_RS22845	COG4772	TonB-dependent receptor
BJD13_RS22870	COG4651	solute:proton antiporter activity
BJD13_RS22870	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD13_RS22910	COG0488	(ABC) transporter
BJD13_RS22930	COG0657	acetylesterase activity
BJD13_RS22930	COG2755	lipolytic protein G-D-S-L family
BJD13_RS22950	COG0477	Major facilitator Superfamily
BJD13_RS22965	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BJD13_RS22995	COG0217	transcriptional regulatory protein
BJD13_RS23000	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
BJD13_RS23005	COG0632	four-way junction helicase activity
BJD13_RS23010	COG3158	transport of potassium into the cell
BJD13_RS23020	COG2255	four-way junction helicase activity
BJD13_RS23025	COG0824	Thioesterase
BJD13_RS23035	COG0848	biopolymer transport protein
BJD13_RS23045	COG0823	Involved in the tonB-independent uptake of proteins
BJD13_RS23050	COG2885	chlorophyll binding
BJD13_RS23060	COG0602	queuosine metabolic process
BJD13_RS23070	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BJD13_RS23075	COG3920	Histidine kinase
BJD13_RS23095	COG0840	transmembrane signaling receptor activity
BJD13_RS23110	COG1187	pseudouridine synthase activity
BJD13_RS23135	COG0514	ATP-dependent DNA helicase (RecQ)
BJD13_RS23140	COG0783	Belongs to the Dps family
BJD13_RS23145	COG1643	Atp-dependent helicase
BJD13_RS23155	COG0837	glucose binding
BJD13_RS23175	COG0535	radical SAM domain protein
BJD13_RS23180	COG0535	radical SAM domain protein
BJD13_RS23185	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
BJD13_RS23190	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BJD13_RS23200	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD13_RS23215	COG1215	transferase activity, transferring glycosyl groups
BJD13_RS23220	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD13_RS23230	COG1199	ATP-dependent helicase activity
BJD13_RS23235	COG1214	PFAM Peptidase M22, glycoprotease
BJD13_RS23240	COG1397	ADP-ribosylglycohydrolase
BJD13_RS23250	COG1397	ADP-ribosylglycohydrolase
BJD13_RS23275	COG0189	ligase activity
BJD13_RS23290	COG0835	chemotaxis
BJD13_RS23295	COG0840	transmembrane signaling receptor activity
BJD13_RS23300	COG0643	Histidine kinase
BJD13_RS23300	COG2198	Histidine kinase
BJD13_RS23300	COG0784	Response regulator, receiver
BJD13_RS23335	COG1595	DNA-templated transcription, initiation
BJD13_RS23340	COG2304	oxidoreductase activity
BJD13_RS23345	COG1446	asparaginase
BJD13_RS23350	COG3142	Participates in the control of copper homeostasis
BJD13_RS23395	COG3537	Alpha-1,2-mannosidase
BJD13_RS23405	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD13_RS23420	COG3858	chitin binding
BJD13_RS23420	COG1388	LysM domain
BJD13_RS23435	COG0837	glucose binding
BJD13_RS23440	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BJD13_RS23450	COG0494	nUDIX hydrolase
BJD13_RS23460	COG3956	TIGRFAM MazG family protein
BJD13_RS23465	COG1742	UPF0060 membrane protein
BJD13_RS23470	COG0330	HflC and HflK could
BJD13_RS23480	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BJD13_RS23485	COG0509	glycine decarboxylation via glycine cleavage system
BJD13_RS23510	COG1960	acyl-CoA dehydrogenase activity
BJD13_RS23520	COG1309	transcriptional regulator
BJD13_RS23535	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BJD13_RS23540	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD13_RS23545	COG0463	Glycosyl transferase, family 2
BJD13_RS23550	COG0517	IMP dehydrogenase activity
BJD13_RS23550	COG0516	GMP reductase activity
BJD13_RS23555	COG2982	Protein involved in outer membrane biogenesis
BJD13_RS23560	COG1272	protein, Hemolysin III
BJD13_RS23565	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BJD13_RS23570	COG0739	heme binding
BJD13_RS23575	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD13_RS23580	COG0626	cystathionine gamma-synthase activity
BJD13_RS23585	COG0460	homoserine dehydrogenase
BJD13_RS23585	COG0527	aspartate kinase activity
BJD13_RS23600	COG1760	l-serine dehydratase
BJD13_RS23620	COG2353	YceI-like domain
BJD13_RS23625	COG2205	protein histidine kinase activity
BJD13_RS23625	COG0784	Response regulator, receiver
BJD13_RS23625	COG2198	Histidine kinase
BJD13_RS23645	COG2814	Major facilitator Superfamily
BJD13_RS23650	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BJD13_RS23660	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BJD13_RS23665	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BJD13_RS23670	COG0259	pyridoxamine-phosphate oxidase activity
BJD13_RS23680	COG1842	Phage shock protein A
BJD13_RS23975	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine