        recF    4217 ..    4257 + -10.2  -2.70143   ACATGGGCAGGCCGT  GGCCCGTTCCTGACCGCC GCGGG GGGGGGCAGGGCCGGGGC  TGCTATAATTGGCCT  57 13
        gyrB    6798 ..    6835 + -10.3  -3.18274   CGACATCTGACGCGG   CATCGCCGCCCCCCGGC GCGC GCCAGGGGCCGGCAGCG    TTGCGTTCCCCTAGC  62 31
LTC53_RS00025 NONE
LTC53_RS00030    8693 ..    8718 +  -3.8  -3.08996   TTCTGTTAGTTTTGC         TGGCTCGGCC CAGGAT GGCCGCTCCG          TCTTCCGTGCCGCTC  45 118
LTC53_RS00035   10044 ..   10059 +  -3.3  -2.77344   GCGGTATCAAACCGC              CTGAA CTGGGA TTCAG               ATTCTTCACGAATCC  40 118
LTC53_RS00040   10783 ..   10819 +  -8.6   -3.0362   GCTGAACTGATACAA   AGGCAG-CAGGCTGGCG CACC CGCCGGTCTGTCCGCCC    TGTCTACTCTTTGCA  55 31
        exbB   11664 ..   11678 +  -8.6  -2.66748   CGTCCACGCAACGAT               TAACGG AGC CCGTTA               TGGCTTTCAGTAGTG  52 54
LTC53_RS00050 NONE
LTC53_RS00055   12559 ..   12578 +   -15  -5.75342   TGACGCGACTGCAAA            CGCCACCG GCAA CGGTGGCG             TTTTTTTTGGCCCCG 100 64
LTC53_RS00080 NONE
LTC53_RS00085   17520 ..   17548 + -10.4  -2.95298   CACAAGGTGAGGATT       GCGCCCATACGCCT GAT AGGCG-ATGG-CGC       TCTGTCATAGCTGCA  60 76
LTC53_RS00115   25211 ..   25234 +  -4.6  -3.36073   GACTCATTCGGAAGC          TGTCGGATGCG AAC CGT-TCCGATA          TCTTTGCCACGTCTG  51 152
LTC53_RS00120   26733 ..   26767 +  -8.6  -2.52543   CGCAGGCCTCCAGCG    CCTGG-C-GCATCGCC GCCAG GGCGAGGCTGTCCAGG    TCGGTTCGGGGAAGT  51 258
LTC53_RS00130   30321 ..   30331 +  -8.2  -3.39948   TGCTGGTCAGCTACT                 CGCC GAA GGCG                 TTGGGTTTCTTCTGA  60 0
        adhP NONE
LTC53_RS00140   32245 ..   32268 + -11.6  -3.03441   GCGTCGGGCGTAGGC          CGGTCCGCGC CGGT GCGCGGCTCG           TGTTCGACGATGGTC  62 282
LTC53_RS00150 NONE
LTC53_RS00155 NONE
        ligD   36558 ..   36582 + -11.3  -3.97406   GGGAGCTGAGCCGGC          GGGCGGCCGCG GAT TGCGGCTTCCC          TTTGTCGCCTTTTCC  79 32
LTC53_RS00185   41046 ..   41067 +  -7.9  -3.61398   CTCGTCGCGTTTGGT           TTGCGCCTG CGCG CGGGCGCCA            TTGTTGGCAAGGCAA  60 247
LTC53_RS00190   42589 ..   42610 + -17.3  -4.67353   CGGGGATTCGGGATG           CGGCCGGCA GCGA TGCCGGCCG            TTTTTCCGTGAGTGC 100 59
LTC53_RS00200 NONE
LTC53_RS00205   51962 ..   51980 +  -6.8  -3.86897   AGTTTCTATAAGTTG             CGAAATTA GTC TGATTTCG             TTTATGGCAGATGCG  64 456
LTC53_RS00210 NONE
LTC53_RS00215   52756 ..   52814 + -30.8  -3.61398   GAAAGGACAAAGGAG TTCAAAGGGGCCAGAGGAAATATGCATT TGA GATGGATATTTCCTCTGGCCCCTTTGGA TTCTTACCCCGGCGC 100 67
LTC53_RS00220   54953 ..   54973 +  -4.8  -2.72344   GTGAAATAAAGGGTC           GGAG-GAAA TAAA TTTCTCTCC            TAATTCGGACTGACC  43 292
LTC53_RS00230   56489 ..   56510 +  -5.7  -3.01791   GGCGGCAACCCATGA           GTGCGGGCA GCAG TGCCCGCCG            TCTTCCCAAGGACGT  47 26
LTC53_RS00235   57241 ..   57260 +  -2.1  -3.55444   TAACTGGACTGATTG            GGCGTGTA TGGAC TGC-CGCC            TTTGGCGAATGGACC  50 289
LTC53_RS00255   62614 ..   62624 +  -6.8   -3.6279   AAAACGCACCATTTC                 GCAG GAT CTGC                 TTATTGCCGAGCTTT  61 159
LTC53_RS00270   66050 ..   66070 +  -6.8  -3.27029   TGCGCGATGGCGGGT            TTTCCGGC AGAGC GCCGGACA            TCTTCCTTGATGCAG  54 51
LTC53_RS00275   66459 ..   66469 +  -3.2   -3.9398   GTTGGTCGATCAATG                 TGCA GGA TGCG                 TTTGTGCGATTCTGC  58 152
LTC53_RS00280   66954 ..   66974 +  -8.1  -3.62591   GACGCGTTGCAGTGC            CGGCGCCGC TTC GCGGCACCA            TTTCGCCGTTGTGCA  63 238
LTC53_RS00285 NONE
LTC53_RS00290   70405 ..   70439 + -12.9  -2.73364   TCCGGCTGGACTCGG    GCCA-GCGGCCGCGCTG GCG CAGC-CTGCCGCTTGGC    TGGTTGCGGTGGCCG  67 73
LTC53_RS00295 NONE
LTC53_RS00300 NONE
LTC53_RS00305   71740 ..   71780 +  -6.8  -3.25823   TTGAAGGCCGCCGGC CTGGTGCAGGTGACGGC ATGAAGGC GGCGAC-CCTGCGCCAG  TTCCTGTCCGCCCAC  54 5
LTC53_RS00310   73499 ..   73540 +  -5.7  -3.66288   GAAGTCTGCAGCGCT GGCGCTGGGCGTCGTACGG TGAA TTGTGTGACGGCCACCGCG  TTCTGTTCCAGGCTG  57 220
LTC53_RS00315   75243 ..   75269 +  -7.9  -2.52623   TGCGCGTCGGCGCCG         TCGCCGGTGCG CGAAC CGGGCTGGCGA         ATGTTGTCGAACACC  48 513
LTC53_RS00330 NONE
LTC53_RS00335   80204 ..   80216 +  -4.7  -2.75844   ATCGAAGCCCTGTAC                CGCCG CAT CCGCG                ATTTCGCCTGAGGCC  43 2
LTC53_RS00340 NONE
LTC53_RS00345 NONE
LTC53_RS00350 NONE
LTC53_RS00355   84885 ..   84905 + -15.5  -4.36914   CCACGCCTTCGGCGC            GCCCCCTTT ACC AAAGGGGGC            TTTTCTCCAGACACC 100 130
        kduI NONE
        kduD NONE
LTC53_RS00370   88070 ..   88080 +  -6.8  -4.32034   CCACCACATAGAAAC                 GCTG CCC CAGC                 TTTTGCTCCTGGTGC  72 358
LTC53_RS00385   90302 ..   90312 +  -4.6  -2.97667   TCCCGTTGTCGCGGT                 CGCG GGA CGTG                 TGCTTTACTCAATAC  45 107
LTC53_RS00390 NONE
LTC53_RS00400   92056 ..   92067 +  -2.2  -3.05463   CTGGAACGCCAGCAG                CTGC GGCA GTAG                 TTCCATCCCGACGAT  41 14
LTC53_RS00405   92846 ..   92883 +  -9.8  -3.15574   GTTCGCATGGCGCGG  GCGC-CGGTTG-CGCGGC CTTG GCAGCGGCGGCCGCGCGC   TGTTGCTGCAGTTGC  60 264
LTC53_RS00415 NONE
LTC53_RS00420   95440 ..   95456 +  -3.5  -4.36914   CCAGGCCGCCGAGCA              CCGAGCC TTC GCCGCGG              TTTTGTCCGCCGCCC  67 130
LTC53_RS00450  102256 ..  102295 + -21.5  -3.01712   CGTGCTGAACTGAGC CGG-CGCGCCGCGC-CGGC GTTC GCCGCGCGCGGCGCGATCG  TGTTGCCACGCACAC 100 28
LTC53_RS00460  106218 ..  106253 + -11.2  -3.75169   CCCCGTGCGGCAACG   GCGCCCGCG-CCGCAG TGCGTC TTGCGGGCGCGG-CGC    TTTGCTGCAATGGTC  73 67
LTC53_RS00465 NONE
LTC53_RS00470 NONE
LTC53_RS00475  109819 ..  109845 +  -5.7  -2.78384   GCAGCTACCCGTCGT         GTCGGGTCGCG GCAGG CGCGGCATGGC         TATGATCGAACCACC  45 189
LTC53_RS00480 NONE
LTC53_RS00485  112543 ..  112567 +  -5.8  -3.06162   ATTGGTGCCAAGCTG         GGC-CGCATATG GTG CATA-GCGCGCC         TGTTCAGCTACAATG  47 109
LTC53_RS00490  113074 ..  113093 +  -3.4  -4.28254   CGGAAAAGTGGCGCG            GCGGCGGG TTGG CCTTCTGC             TTTTCGCTCTTCCGG  63 82
        rmuC  120123 ..  120165 +  -8.4  -4.08485   CGATGCGGATGAGGA TGCCGCGCGCGACG-AG CAGGAATGAA CTGCGTCGCGCCCGGCC TTTCATTTCCCTGCG  72 1
LTC53_RS00530  121005 ..  121020 + -11.8  -4.65895   GATTCAGACAAAAAA              CCCGGC CGAA GCCGGG               TTTTTGCGTCCCGCC 100 187
        recC  129388 ..  129436 +  -6.6  -3.48276   AGGAACTGCGCCGGC GCATCCGCGAGCGGCTGGCGCTCG CAG CGA-CGCTGGT-GCCCACGGCTGC TTCTGTAGGAGCGGC  55 221
        recD  135163 ..  135177 +   -10  -3.16564   ACGCGAGGCATCGGT               GGCGAA AAA TTCGCC               TTGCTGGCCTGCGGG  62 165
LTC53_RS00580 NONE
LTC53_RS00585  136200 ..  136214 +  -4.9  -4.19238   CATCCTTATAGACGG               CCGGG TAGCT CTCGG               TTTTGGGCTTGCGGC  66 254
LTC53_RS00610  139225 ..  139238 +  -2.5  -4.32177   AGATGCCAATAAAAT               TATTA TCTA TAATA                TTTATTATAACGTAA  65 274
LTC53_RS00615  140079 ..  140089 +  -6.8  -3.82946   CAGTGGATGGCGGCC                 GGGA GAC TCCC                 TTGTATTTGAAATGG  64 69
LTC53_RS00625 NONE
LTC53_RS00630  142249 ..  142259 +  -3.2  -3.38088   CGCCAATCGCGCCGG                 CGAG CAG TTCG                 TTCATTGCATCACTT  47 356
LTC53_RS00640  143360 ..  143376 +  -4.3  -3.67498   CGCCCTTGTTTCGTT              CGCCGGT TGC GCTGGTG              TTGTGTTCGGCGTTG  55 154
LTC53_RS00665  149357 ..  149376 +  -7.1  -3.68827   CGACTCGGGTACCAT            GCAGCCCC ACTCA GGGGC-GC            TTTCGCTCATGGCTG  61 143
        folE  149973 ..  150023 +   -12  -3.02511   CTGCGCTTCATCGAC GGCGGCAAGCGCTGAGCGTGGC-GC ATGC GCTGCCGCGCT-AGCATTTGC-GCC TCTTCGCCACGTACG  65 11
LTC53_RS00675 NONE
LTC53_RS00680  152231 ..  152266 +  -8.8  -3.34013   CTAGGGCGCGCTTTG    GCCGGCACGGGTTGCCG CGG CAGCG-CCCGCGCGGGC    TTGGTTCCGCGCGTC  58 37
LTC53_RS00685 NONE
LTC53_RS00690  157587 ..  157604 +  -3.4  -3.53091   CAGCAGCGCCAGGAT             CA-GCGG CCGCA CCGCCTG             TTTCGGCAGCAGGCT  49 488
LTC53_RS00700 NONE
LTC53_RS00705  158652 ..  158705 + -24.7  -3.21099   GGGACCCCTGTAGGA GCGGCTTCAGCCGCGACAGACTTTA CCGA TAGCTCCTGTCGCGGCTGAAGCCGC TTGCTCCTACAAAAG 100 49
LTC53_RS00710  161109 ..  161150 +  -7.1  -2.62184   GCGTCCGCGCCGGAT AGGCGGCGGCTGCGCTGGCC TCT GGCCATCA-AGCCGCAGTCG TGCTGTCCACCGCCA  47 59
LTC53_RS00715  162723 ..  162739 +  -9.3  -3.86346   CTGAACCGGCGCGCA              GCCGCGC GTG GCGCCGC              TTTGTCGCACGGTGC  71 118
LTC53_RS00720 NONE
LTC53_RS00725  165536 ..  165562 + -10.1  -2.90496   ATGGTGCCGAATAGC        GC-GGTGCCGGC GATC GCCAGCACCAGC         TCCTTTGGGAACGCA  59 229
LTC53_RS00735  168792 ..  168825 +  -8.7  -3.53811   ACAAGTAACCTGCAT     TCAGAGAGTTCCGCC ATAG GGCGGAGCACCCCGA      TTTCGGGGCCATAGC  62 73
LTC53_RS00740  168894 ..  168906 +  -4.8  -2.74461   TCGGTTCGATCCCGA                CTGG CTCCA CCAG                ATTTGCAGATCCCTC  43 14
LTC53_RS00745  169093 ..  169116 +  -4.5  -3.70108   ACTAAGAATTTAAGA          TGCGCCAGC AGTGAG GCTGGGGTA           TGTTCTTTTAAAATT  55 60
LTC53_RS00750  172283 ..  172296 +  -2.3  -3.28712   GTCTTCCACACAAGC               CGCAC ATCC GTGCC                TTGTCCGAAGACACA  44 143
         rrf  172464 ..  172486 + -14.9   -5.4505   GGGCTTTACCCCAAA           TCCCCGTCC CACAA GGACGGGGA           TTTTTTATTGCGCGC 100 39
LTC53_RS00800  188320 ..  188356 + -11.4  -3.31144   GGCGCGTTCCAGGGT    GGTCTGCGCGGCGGCC AGGCC GACCGCGCCGCGGACC    TTGTCGACGTGGCAC  66 311
LTC53_RS00810  190868 ..  190900 + -10.5  -3.57144   GGCGGCTGCAACGCG      GCGATTTGCGGGCTG CCG CAGGCGGCACATCGC      TTTGAGGATGACGCA  67 92
LTC53_RS00815  193321 ..  193341 + -10.3  -3.17194   GGTTGCCGCAGGCGA            CGGGCTGGC GCA GCCGGCACG            TTCGCTTGCGCCGAT  62 117
LTC53_RS00820 NONE
LTC53_RS00825  195879 ..  195902 + -12.4  -2.59683   CGGACCCTCACCGCA          ACCCCTCTCC CGGG GGAGAGGGGC           GTTGTACGCTGCGCT  64 126
LTC53_RS00845 NONE
LTC53_RS00850  202104 ..  202142 +  -4.5  -3.40403   CGATCGTCCCTGCGG  CGGTCGTGGCGGT-GGTC GCCT GGCCGATCGTCATGGCGG   TTGTCGTCGCGGCGA  52 413
LTC53_RS00870  205193 ..  205206 +  -5.2  -3.24925   GCGACCGGCCGGGTA               CGCG CTTTCC CGCG                TTCGTCATCTGCCCT  51 48
LTC53_RS00875  206276 ..  206290 +  -7.8  -2.54896   TTCCGGGTGCGCAGG               TGCCGG TGG CCGGTA               TGCGTTCAATGCGGG  50 202
LTC53_RS00890  209160 ..  209177 +  -3.3  -3.09516   CAGCGGCAAGCGCAT             CTTCGTG CGTT CGCGCAG              TTGAGTCGTCCGACA  44 4
LTC53_RS00895  209973 ..  209983 +  -2.4  -2.57132   CGGGCCGATGCAGAT                 GGCC GGT GACC                 CTTATCACGGCGGAG  38 168
LTC53_RS00900  210798 ..  210848 +  -8.9  -3.56643   CCGGGGGTCTGAACC GGGCGCATCGCCAGGC-CAGGGCA CCCA TGCCTGATGTCTGGCAATGCGCGC TTTCCGACCTGTAGG  62 29
LTC53_RS00910  215969 ..  215989 + -14.7  -2.78384   ATGCGTAAGCGCCGC            TGCGCCGCG CGC CGCGGTGCA            TCTGATCGACCGGCC  72 327
LTC53_RS00915  217247 ..  217270 +  -5.8  -3.90744   ACTATCGGCCAACGT          GGGGCCGGTG TACG CTGCGGCCTC           TTCTTTCCGGAAGCG  63 298
LTC53_RS00920 NONE
LTC53_RS00925  218425 ..  218459 + -14.3  -2.65815   GGCCCTGAACGCACC    GCGCCGGTGC-CTGCGC TCG GCGCTGTGCACCG-CGC    TGCTGTCGCTATGCC  69 33
LTC53_RS00930 NONE
LTC53_RS00935  221182 ..  221234 +  -4.2  -3.66654   AACCTGGTGGCGGAG CGATTGCCGACGGGCGCACGC-GTGC TTGGC GCACCGCAT-CGCCCG-CGGT-ACCG TTTGACGTTAGGCTG  54 185
LTC53_RS00940  221751 ..  221761 +  -8.2  -3.06815   TAGGGCGCTTCCCAC                 CCGG CTT CCGG                 TATCTTGACCCGAAT  55 78
LTC53_RS00945  222584 ..  222594 +  -4.6  -2.87586   AACCATGGAACACCG                 CGGC CCG GTCG                 ATTTGATCCATTGCT  44 40
LTC53_RS00950  224028 ..  224046 +  -4.4  -3.96327   TGATTCTGCGTATTT             TTCCCACG ATA CGGGGGCA             TTTCTCCTGCAGCGT  60 423
LTC53_RS00960  227334 ..  227344 +  -2.4  -4.15006   ACCGAAACCTGATTC                 CCCC ACC GGAG                 TTTTCGCATGCGTCT  58 29
LTC53_RS00965  228003 ..  228026 +  -2.2  -3.90112   GTTGGGGTGAGTGTC          CCCGGCGCGA AGCG TCTCGCGGAG           TTTGGTTGCACGAGG  56 65
        glnA  230834 ..  230857 + -15.2  -2.70932   GATGACATGCAAACC          GCCGGCCGGC GTAC GGCGGCCGGC           TCCTTCCACCAACGG  72 308
LTC53_RS00980 NONE
         amt  232766 ..  232797 +  -3.6  -4.64676   GCGGTCAGTGGCCAT      C-GCCGGCGCTCC ATGGGGC GGAACGACGGCAG      TTTTCTTCGCGATCC  73 115
LTC53_RS00990 NONE
        ntrC  235525 ..  235538 +  -2.3   -3.4252   TCGGGACTCGGAAAA               GCACG GTGC CTTGC                TTCTGATCGCTCCGC  46 61
LTC53_RS01000  236281 ..  236291 +  -4.6  -3.05844   GCGCGTGGCCTGCGG                 CGTG ATC CGCG                 TGTTGCGCTGACCGA  45 4
LTC53_RS01005  237062 ..  237099 + -21.3  -2.59564   TGTACGCCGATGCAA   GCG-CGCCGCCGGTGGCT TCG GGCCACCGGCGGCGACGG   GTTCTGACGTCGGCA 100 53
LTC53_RS01015 NONE
LTC53_RS01020  240987 ..  241036 + -11.3  -4.56597   AGCAGCCCGGGGCTG TCCGGATGGCTCTGCAGCCAGCGC TGC GCGCTGGC-GCGGCGCGAATCGTA TTTTTCCACCGGCAG  91 457
LTC53_RS01040 NONE
LTC53_RS01045 NONE
LTC53_RS01050  245278 ..  245309 + -14.4  -2.82516   GCCGCTGATCGCGCC      TCCCGGCCG-GGCGC CGA GCGCCGCGGCTGGCA      TGTGATAATCCCGAA  71 33
        secB NONE
LTC53_RS01060  246941 ..  246972 + -23.2  -2.87564   GCCTTGTTCCAGACA      CGAAAAAGCCCGGC CGAA GCCGGGCTTTTTCG       TGTGTACGGCCATCC 100 45
LTC53_RS01080  252212 ..  252260 + -23.1   -3.6215   GACGCTTCGCGCCTT ACCCTCAGCCGAGCCCCTCTCCC GTC GGGAGAGGGGCTCGGCTGCTGTC TTTCCGGTGCGTTCG 100 86
LTC53_RS01085  252744 ..  252757 +  -5.2  -3.29511   GCAACCGCTAGAATT               GGCG CCCCTT CGCC                TTATCCCGGCGTACA  51 94
LTC53_RS01090  253870 ..  253889 +  -4.4  -4.24342   AATCTGGCGCTTTGG            GAAAATTA TTGG TAGTTTTC             TTTCTTAATGCCCGC  66 101
LTC53_RS01095  255122 ..  255140 +  -7.4  -2.52676   GCCTGCGCCCGCCTG             TGCAGACG TGC CATCTGCA             TGCCTTGACCGCGTA  49 45
LTC53_RS01100  256144 ..  256190 + -10.2  -2.72661   AGCGGCCCGGTACAG CGCCGTCCTCGGGATCGGTGGCG GGCG CGC-AGCG-TGCCGAGG-CGGCG TGGTTGGCCATGGTG  57 59
LTC53_RS01105  257080 ..  257096 +  -5.7  -3.57144   GTCGTGGATCGTGCA              GCGGCTG TAG CGGCCGA              TTTCGGCATCCAGCG  57 262
LTC53_RS01115 NONE
LTC53_RS01120  260745 ..  260783 +  -5.9  -3.21924   CCTTGAGCACGTAGT  CGGCGAGCA-GCGCCTGC GATT GCGGGTGCATCTTCGGCG   TGTTGTAGGCGCTGC  50 35
LTC53_RS01130  263083 ..  263106 +  -4.4  -3.89614   GGTTTCCGAAGATAC          CCG-CGCGCCG ATT CGGCACGACAG          TTTCTGGACATTGCC  61 49
LTC53_RS01135  263298 ..  263344 + -39.7  -4.03234   GCCCGCGCTGCACCC CGAACGGCCCGCCGCAGCGGA GAATA TCCGCTGCGGCGGGCCGTTCG TTTGTGTGCGCGCCG 100 43
LTC53_RS01145 NONE
        ubiB  267070 ..  267085 +    -6  -3.24747   CATCCTGCGCGCGTT              GGCCAG CTCG CCGGCC               TTGGTGGTGTACAGC  50 167
LTC53_RS01160  268325 ..  268351 +  -2.9  -4.08692   GAACGCTTGCCGGAT        GCGCCAGGCGAG GTCG CTAGC-TAGCGC         TTTTCCAGAGGCTTC  59 2
        arfB  269744 ..  269760 +  -5.7  -2.74605   TCAAACGCGGCCGTT              CGCCCGG CCG CTGGGAG              TGACTTTTGAGCGAA  45 6
LTC53_RS01175 NONE
         dcp  272759 ..  272782 + -18.2   -4.8622   AGCGGTGATCGAGCA          CGGGATGGCC CAAC GGCCATCCCG           TTTTTCGTTGCGGCC 100 57
        aceB  279730 ..  279746 +  -3.6  -3.74693   CTGCGCCTGACCTCT              CCCGTG CCTTC CACGCG              TTTCATCCGATACAC  54 92
        aceA  281149 ..  281166 + -14.1  -5.75342   CCCAGGGAGGGGACA             GCCCGGG TTCG CCCGGGC              TTTTTTTTCCGCGCG 100 72
LTC53_RS01215 NONE
LTC53_RS01220  285212 ..  285239 +  -6.2  -3.28924   CTTGGGCGGCTTCGG        GTCCG-CGGCCAG CGC CTGGTCGGCCGGC        TTGTAGCCGAGACTG  53 148
LTC53_RS01230  286839 ..  286853 +  -5.6  -3.42583   GCTTCGTCGGATGCA               GCCGGC TTG GTTGGC               TTGTCGCTATGTTCG  52 198
LTC53_RS01250  291211 ..  291227 +  -9.3  -3.03309   GGTGGCAACACTTGC              GCGCGTC GGT GCCGCGC              TGGTTGTTGTTGGCC  57 341
LTC53_RS01255 NONE
LTC53_RS01260  293340 ..  293393 +  -4.7  -3.53012   GCGCAATGGCAGATG TGTGTGATCAGCACGCATCGCGCTGC AGTCG GTAGCGCGATGC--GCTG-TCCCGGA TTTGCCGCGCCCGGC  52 53
LTC53_RS01275 NONE
        pcaD  296158 ..  296173 +  -2.4  -4.03888   CAGGCGGTCCGGCCC              CGGCGG CAGT TCGCCC               TTGTTGTTGTAGGTG  58 358
LTC53_RS01295 NONE
LTC53_RS01300  299949 ..  299977 + -20.3  -5.02074   CGCACGCACAAAAAA        CAGCGGCCGGAAC GTT GTCCCGGCCGCTG        TTTTTTGGGGCATCG 100 386
LTC53_RS01315  304070 ..  304101 +  -9.2  -3.35996   CCGCCGCCGCGTGAG      CGGAGTCCGCCGCG CGGT TGCGGCGATCGCCG       TTGTGCGTGGCGATG  63 27
LTC53_RS01340  309254 ..  309275 +  -5.7  -3.29144   ATGGCATTCGATCGT           TACCGGCTG CGGT CGGCCGGAG            TTGTCGCCGGGGTCC  51 263
LTC53_RS01345 NONE
LTC53_RS01350 NONE
LTC53_RS01355 NONE
LTC53_RS01360  312443 ..  312456 +  -2.3  -3.55548   AGCGACGAGGGACTG               CACGC ATGA GCCTG                TTTCGAACCGTGTTC  48 17
LTC53_RS01365  313755 ..  313778 +  -9.5  -4.58395   GTCCCGAAAAAAACC          CCCCGGCAC ATGCCG GTGCCGGGC           TTTTTGCAGGATCAG  86 151
LTC53_RS01380 NONE
LTC53_RS01385 NONE
LTC53_RS01390  319472 ..  319524 +   -11  -3.53444   GCCGTGTGTACGAGT CGCGGGCCTGCAGCGACGCTCGCG CAATT CGCGGGCGGCCCTGACCGCTTGCG TTTCGCGCCCGATCG  70 185
LTC53_RS01395  321472 ..  321501 +  -8.5  -3.53811   GCCTAGCGGGCGCGC       ACG-ACAGGCACGC TCC GCGTGCCAGTGCGA       TTTAGAGCAGCTAAC  62 58
LTC53_RS01400  322737 ..  322749 +  -5.5  -3.55563   TCATAACGATTCCTT                CTGTC AAT GACGG                TTTGCGCCGTGCGCT  54 397
LTC53_RS01410  323959 ..  323971 +  -6.9  -3.03124   CGCAGTCGGGCACGA                CGGCG GCA TGCCG                TGTTGCAGCATGCCG  51 45
        hemB  325336 ..  325353 +  -7.7  -2.62184   GCCGCTGCGTTCGTC             GCGACTG AATA CAGTTGC              TCCTATCAAGGCAGG  50 224
LTC53_RS01425  327542 ..  327562 +  -6.8  -3.14132   CGGCCTTACGGCATC            GTCAACGC GATCG GCGTGGAC            TTCATCGCCGCGGAG  52 181
LTC53_RS01435  330998 ..  331050 +  -6.2   -3.9122   ATTGAGGTGGGCCGA TGCGGTTGTA-GCGATTCGGGCGGA GCCC TTGGCCCGGACCGCATCCGATCGCG TTGTTTCCACCGCTG  64 36
        aroE  333049 ..  333060 +  -7.2  -4.26327   CCGATTGACCTTTTT                GCGC CCCG GCGC                 TTGTTTTCGTAGCTA  72 33
LTC53_RS01450  333434 ..  333452 +  -2.2  -3.53012   GCTGCGCGCGGCGTC             GGCGGCCG GGC CGTTCACC             TTTCCCCGGCACGCG  48 44
        dinG  336071 ..  336106 +  -2.4  -4.18018   GGCTTCGCTGCCGTT    GGCGATGCCTGCGTTG CGAT CGGTGAAGGCATGGCG     TTTTGCATCCCAGCG  61 474
        katB  338367 ..  338406 + -24.4  -3.90744   GGATTGATCGTCCAC  GGCGCAGCGCGGCGGCG CCTACCC CGC-GCCGCGCTGCGCC  TTCTTTCCCGGAGAC 100 34
LTC53_RS01475  339174 ..  339186 + -10.5  -2.83112   GCCGCATCGCCCGCG                GCGCG CGC CGCGC                TGTCGTGCCTTCGCT  59 227
LTC53_RS01490  343643 ..  343658 +  -7.5  -3.69283   GCCGGCCGCCGGCGC              CGCGC TAGGTC GCGCG               TTGTTCCGTAGATTC  63 18
LTC53_RS20010  350408 ..  350420 +  -9.1  -2.99449   GTTTCGATGATGTTT                GCCAG AAA CTGGC                TATCATTATGTACGG  57 202
LTC53_RS01550  356422 ..  356442 +  -2.6  -5.75342   TGATTGCGCGCCGCG           TTGT-TGCC ATCT GGCATACAG            TTTTTTTTCCCAAAG 100 221
LTC53_RS01570  359580 ..  359593 +  -5.2  -3.02263   TTAACTACTATTGGA               CCGC CTAAAA GCGG                TATTGCGCCAAGTAT  47 315
LTC53_RS01590 NONE
LTC53_RS01595  364475 ..  364515 +  -5.1  -3.13299   GGCTGGCCACGCACA  CCAGGTGGCGGCGCTGCAG CAG CCGCACCGCGGCGAGCAGG  TCTTCGATGTCCTCG  47 361
LTC53_RS01640 NONE
LTC53_RS01645  374691 ..  374707 +  -3.5  -3.68324   GCCCGACCACCGCGC              CGGCGCC GAC GAAGCCG              TATTTCTTCACCGTG  55 224
LTC53_RS01660  376781 ..  376796 +  -6.8  -4.26344   ACACGCAAGTTGAAG              TGGCAG CTGA CTGCCG               TTTTCGTCGCGCTGT  72 316
LTC53_RS01665 NONE
LTC53_RS01670  381192 ..  381205 +  -2.3  -2.72661   CCGCTGGAGGCCACG               CCATG AGCG CACGG                TCGTTGCGCCTGCTG  38 20
LTC53_RS01675  383065 ..  383080 +  -3.2  -3.20723   GGTCATTCCGCGCAC              GAACGA CCGG TCGATC               TTCAGTTCGTCCAGC  45 454
LTC53_RS01695 NONE
LTC53_RS01700  389306 ..  389339 +    -8  -2.78384   TTCCACCGCGACCTG     CTGCTGCCGGGCGCC TGAGC GG-GCCTGGCCGCCG     TATCATGGGCGCCCG  51 8
LTC53_RS01705  390175 ..  390189 +  -4.9  -3.14344   GTCAGCGTGTGGCGG               CGTGC GTGCA GCGCG               TTGGTCGCGCCGATC  47 397
LTC53_RS01735  396211 ..  396221 +  -8.2   -3.9093   GTGTGCGTAAGCAGA                 CGCC AGC GGCG                 TTCTTCTATGATGCC  70 255
LTC53_RS01740  396957 ..  396969 +  -4.8  -3.27298   TGCTCGGGCGCCGTT                GCCA GTGCG TGGC                TTCCTGGTTCGCACC  49 229
LTC53_RS01750  398289 ..  398306 +  -9.1  -5.66229   CAGGATGTCCAAAAA             CCCTCGA GAAA TCGGGGG              TTTTTTGTTATTGGT 100 62
LTC53_RS01755  399734 ..  399746 +  -3.3  -3.60792   GCTCCTGCCGCAACG                ACACC GCT GGTGA                TTTCCCAATTGGCAG  49 110
LTC53_RS01770  402479 ..  402495 +  -9.4  -3.48276   ACATCCATACCGCCA              CCGCAC CTGGA GTGCGG              TTATATGCCGCAAGA  63 96
LTC53_RS01775 NONE
LTC53_RS01780  405851 ..  405890 +  -3.5  -3.21912   CACCTCAGCAGCCAG CGCCGACTCGATGACCTCGG CGT CCG-GGACAGCGGG--GGCG TTCATGGGTTGCGGC  45 477
LTC53_RS01805  408283 ..  408298 +  -2.4  -2.87931   CGCTCATCAGCACAT              CGGACT TGTC GGCCCG               TCTCTCAAGGATGCG  40 522
LTC53_RS01820  410660 ..  410687 +  -4.8   -3.4052   TTCGGCAGGGCATTT        GC-TGTCGCCGAT CAA AGCGCCGACATGC        TTACTTAAATTGCCG  51 45
LTC53_RS01825  411754 ..  411776 +  -3.4  -2.87132   GCAAGACACGCTCAA           GGTCGC GCTGGACAATG GCGACC           TGTATGCAACCACAC  41 392
LTC53_RS01830 NONE
LTC53_RS01835 NONE
LTC53_RS01840  416808 ..  416839 + -23.8  -3.01712   AAAGCTCAAGGCCAA      CGCATGGCGGCGCC GGCA GGTGCCGCCATGCG       TCTTGAGCCGGACCG 100 69
LTC53_RS01850 NONE
LTC53_RS01855 NONE
LTC53_RS01860 NONE
LTC53_RS01865 NONE
LTC53_RS01870  428578 ..  428597 +  -4.2  -3.31792   GCAGGGCGTTGTGCA            GTGCTTGT TGGT GCAGGCGC             TTCTAAAGGTGCTGG  47 102
LTC53_RS01875  429630 ..  429644 +  -2.1  -3.90744   ATGCGAGCGTCTGGA              GCTGCG TCTT CG-AGC               TTGTTTGGCGAAGGC  56 265
LTC53_RS01880  430981 ..  431035 +  -7.1   -3.1247   CCTTCACAGGCCGCA GCGGATTGATGGGGATGGCCTTGCGC ATGC GGGCGCGGCGATTCTCAT-ATTCCGC TTCGATCTCCGCAAT  53 147
LTC53_RS01910  439175 ..  439194 +  -2.1  -4.08692   GCGCAGGCACGGCTC            CGCTGTTG AAATG CAGC-GCG            TTTTGCGCAAAGTTC  58 145
LTC53_RS01915  440525 ..  440538 +  -2.3  -2.53876   GTGGGGCGTGGATTG               GGGTG CACG CGTCC                TGCCTTGACGTCAAA  38 4
LTC53_RS01920  441715 ..  441757 + -12.7  -3.87815   AAAAATGCAGCATGG CGACCTCTGGTCCAGGCGGA GACG TTCGCCTGGGCCAGTCG-CG TTTGTGGCACTGGCA  81 40
LTC53_RS01935  443788 ..  443799 +  -7.2  -2.83012   CGGCGGCCGGGCATC                GCGC AACC GCGC                 TATCCTGATGCCATT  50 6
LTC53_RS01940  444220 ..  444239 +   -15  -3.62096   TTTCGATTTCGGCAT            CGCCTGGC GCGC GCCAGGCG             TTTGCAATGCTCAAG  81 74
        speA  449841 ..  449855 +  -8.5  -3.44051   GACAGTGCTGCCTTG               GCCGC GCATG GCGGC               TTATGGTGCTCAACA  60 303
LTC53_RS01960  451711 ..  451731 +  -8.1  -2.53876   CTTAGCAGGCTGCCG            CCACGCCCG ATG CGGTCGCGG            TGCGTTGCGCTAGCC  50 36
LTC53_RS01965  454457 ..  454473 +  -3.5  -3.63515   TCGCCGAGCAGATCC              GCGCTGC CGG GCTGAGC              TTCTTCGCGCTCAGC  54 184
LTC53_RS01975  456944 ..  456970 +  -4.3  -3.53811   GCGCGGTGATTGCCG        GACG-TGCGCGG TTCT CCACGCAACGGC         TTTACGCCGGATCGG  52 64
LTC53_RS01985 NONE
LTC53_RS01990 NONE
LTC53_RS01995  459310 ..  459322 +  -4.7  -4.21408   TGAGGCAACAGCACC                CCGGC TTC GCCTG                TTTGCTTTTACCATT  66 38
LTC53_RS02000  460349 ..  460387 + -14.4  -3.06183   GATCGCGATCGCCGG   CAGGCCGCTGCCGGTCAG TTT CTGCTTGGCCGCGGCCAG   TTCGCTGGCGGTGCC  69 255
       coaBC NONE
         dut NONE
LTC53_RS02030  468171 ..  468224 +  -5.2  -3.05596   CTCGTCGCGACTGAA GTCGCTCCCACAAGGGACGCGCGGCG TACT CACTGGGTG-CACT-GTGGGAGGGAC TTCAGTCCCGACATC  47 263
LTC53_RS02045 NONE
LTC53_RS02050  471912 ..  471935 + -19.6  -2.52896   CTTGCGGATGATGCT          CGGCGGCGCA GAGG TGCGCCGCCG           TCCGTTGGGGAGTAC  93 54
LTC53_RS02055  472159 ..  472174 + -11.8  -3.28791   CGCGTTGCGCGAACT              GCCGGC CGGC GCCGGC               TTCTGAGCCGCGCAT  68 4
        tyrS  476310 ..  476340 +  -8.3  -3.75024   CTGAGCAGGATGGCG      GCTG--AGCGCCGCC ACC GCCGGCGCTGACAGC      TTCTTGGTCGTAGAG  65 37
LTC53_RS02075  478491 ..  478524 +  -8.7  -3.53811   ACAAGTAACCTGCAT     TCAGAGAGTTCCGCC ATAG GGCGGAGCACCCCGA      TTTCGGGGCCATAGC  62 73
LTC53_RS02080  478593 ..  478605 +  -4.8  -2.74461   TCGGTTCGATCCCGA                CTGG CTCCA CCAG                ATTTGCAGATCCCTC  43 14
LTC53_RS02085  478792 ..  478815 +  -4.5  -3.70108   ACTAAGAATTTAAGA          TGCGCCAGC AGTGAG GCTGGGGTA           TGTTCTTTTAAAATT  55 60
LTC53_RS02090  481982 ..  481995 +  -2.3  -3.28712   GTCTTCCACACAAGC               CGCAC ATCC GTGCC                TTGTCCGAAGACACA  44 143
         rrf  482163 ..  482185 + -14.9   -5.4505   GGGCTTTACCCCAAA           TCCCCGTCC CACAA GGACGGGGA           TTTTTTATTGCGCGC 100 39
LTC53_RS02100  484044 ..  484069 + -14.7  -4.07868   CAATGTTCCACGAGA         CGCCTGGACAC GCGA GTGCCCAGGCG          TTTCTATGGGTGTCA  89 96
LTC53_RS02115  488220 ..  488252 + -16.9  -2.52464   GTGGATCCGTCATCG      TGGCTGCAGCGCCGC TGA GCGCCGCCGCGGCCA      TGCATTCAACGCGGA  79 8
LTC53_RS02120  490007 ..  490035 +  -4.3  -3.82592   TCACCTTTTCGCCGG        TGGCCGCGTCGCG AAT CGCGGACTGGCCC        TTCTTCTCCACTTCT  58 247
LTC53_RS02135  492609 ..  492651 + -18.5  -3.84451   GCGCGGCGCAGGCCG CGCGC-CACCAAAGCCCCGC TTTG GCGGGGCTTTTTTGTGCGCG TTTCCCTTTGGCCGG 100 62
LTC53_RS02140  496163 ..  496182 + -11.4  -2.52464   CTCCGCAGGATCGGG            GCGGTGCG CGCC TGCACCGC             TCCCTTGCGCGCGCC  61 47
LTC53_RS02150  499454 ..  499475 + -11.5  -3.49048   CTCGCCGCGGTCGTG           GCGCTGTGC GTGG GCGCGGCGC            TGTTCTTCATTCAAG  72 91
LTC53_RS02155  501257 ..  501272 +  -8.2  -3.04144   AGCAACGACGCATTG              CCGCCG GCCG CGGTGG               TGTTCACCGTCACCA  55 204
LTC53_RS02165 NONE
        coxB NONE
        ctaD NONE
LTC53_RS20020 NONE
LTC53_RS02180 NONE
LTC53_RS02185  509475 ..  509489 +  -5.6  -5.24129   GGGATTTTCGCAAGT               TCGCAG CTT CTGCGC               TTTTTTGTAGGAGGG  89 81
LTC53_RS02200 NONE
LTC53_RS02205 NONE
LTC53_RS02210 NONE
        cyoE  513996 ..  514006 +  -6.8  -3.79882   GCTGTCGCGGTCCTG                 GCTG CCG CAGC                 TTTCCTGCATCTTGT  61 504
        tsaD NONE
        folB  522495 ..  522513 +    -3  -3.25823   CAGCCGCTTGACGCT             CATTCCGG TTA CGGGCATG             TTGCTGTGCAACGCA  46 65
LTC53_RS02260 NONE
LTC53_RS02265  525047 ..  525073 + -10.1  -3.06696   GGGTTGAGACGCAAT        CCGGCCT-GCGC TGGA GGGCAAGGCCGG         TGTGTTCGCGGACGC  60 110
LTC53_RS02270  527464 ..  527498 + -22.9  -2.62184   GCAGGCCTGACAACG     GCGCGCAGGCGGCCG CGGCA CGGTCGTCTGCGCGC     TGCTCTGCCCGGCCC 100 31
LTC53_RS02275  529233 ..  529250 + -11.3  -3.14463   GTCCCAGTCGCGATG             CAGGTCG GCCT CGACCTG              TTCGTAGGCCAGGTT  64 455
LTC53_RS02315  538537 ..  538548 +  -5.8  -3.60296   GATTGCGCATGTCGA                TCCG GATG CGGA                 TTTCAGCTGCGAATG  54 72
LTC53_RS02320 NONE
LTC53_RS02325  540739 ..  540752 +  -9.5  -2.99471   GCTCGGTTGACCTTG               GCGGC GCAG GCCGC                TGTATATCAACCTCA  57 123
LTC53_RS02335  543002 ..  543016 +  -5.6  -4.45544   GCCGCCGACGTACCG               GTACGC TGG GCGTTC               TTTTGCTTCATAGGC  74 77
LTC53_RS02340 NONE
LTC53_RS02345  543983 ..  543998 +  -2.4  -2.82516   GGGGAATGGATTCAG              CCTGGC ACCG GCAGGG               TGTGGTCATGCACCG  40 174
LTC53_RS02350  544532 ..  544558 + -10.1    -3.646   GCAACCGACGAGTGA         AGAAGGGCGGC CTGGT GTCGCCCTTCG         TTATGTGTGGTTCGA  70 138
LTC53_RS02355  545033 ..  545053 +  -8.9  -2.78596   GGCCCCGGCGACCCT            GCGGCGCAA TAA TCGCGCTGC            TATGCTCGCGCGATG  52 14
LTC53_RS02360 NONE
LTC53_RS02365  546585 ..  546625 +  -8.9  -3.15249   TCGGCTGCGCAGTAG GCGCGGCC-GACGGCGTGC AGCGA GCG-GCCGGCAGGCCGCGG TTGATGGGACGTCTC  56 26
LTC53_RS02370  548434 ..  548453 +  -4.2  -3.66178   GCGCCTCGCCGATTT            GGGTGT-GC GAC GCTGCGCCC            TTTAGCCTTACCCGG  54 100
        queF NONE
LTC53_RS02405 NONE
LTC53_RS02410  562710 ..  562733 + -12.4  -5.24129   CCGGCGCGGCACGCT          GGGCGCAGTC GCGA GACTGCGCCA           TTTTTTGTGGGCAAA 100 103
LTC53_RS02450  578579 ..  578599 +  -8.9  -4.15044   CACCCAGCGGTCGCG            CAGGTGCTG CAG CCGCGCCTG            TTTGTTGGCCGCGCC  75 401
        aceK  583983 ..  583996 +  -5.9  -2.78384   TGCGTCAGCCGGCTG               CGCTG TAAT CGGCG                TCTCATCCAGGCAAG  47 60
LTC53_RS02470  584953 ..  584984 + -19.6  -3.01791   CGGCAGCGCCGCAAA      CGAAAAACGCCCCGC GAT GCGGGGCGTTTT-CG      TGTTCGGCCAGCGCT 100 68
        rhlB  589435 ..  589462 +  -2.5  -2.61681   TGGACGAAAACCCGG        GCCGCTCCGGC ATAATC GCCGGATGAGC         GTTCTGCGGTTCGAC  38 74
        ftsE NONE
        ftsX NONE
LTC53_RS02500 NONE
         ung  592714 ..  592748 +  -8.4  -3.09004   GGCGGTACCCGAGGT     GCGCCGCGTGTACGCA AAT TTCGCAGGCGCGGTGC     TAATTTTGGCGCTCG  56 54
        rpoH  593826 ..  593844 +    -8  -4.65895   TCAGCGAAGCAAAAA             GGCCCGGG TTT TCCTGGCC             TTTTTCGCTGGGCCG  81 68
LTC53_RS02525  596459 ..  596479 +  -5.3  -3.91897   GGCGCGGCCGGCGAC            CTGGATCAG CTG CTGCGCCAG            TTTCTCGCTGGCGCG  60 489
LTC53_RS02535  600180 ..  600205 +  -5.9  -3.72576   GCAGGGTAAAATAGC         GCCCCTTCGCC ACCC GGCGCCGGCGC          TTTCCTGCGCGGCCG  59 104
LTC53_RS02540  601679 ..  601690 +  -2.2  -4.65895   CACGCGCGCAAGACC                TTCC TTCC GGAG                 TTTTTCCATGAACCA  70 88
        sppA  603651 ..  603668 + -14.1  -5.46706   GCAGGCAACGCACAA             CGCCGGC CGAT GCCGGCG              TTTTTATTTTCCGGT 100 80
LTC53_RS02555  604972 ..  604995 +  -5.2  -3.66178   GCGGCTCGGCGTCTT          CGGGCGTGGCG AAG CGCCA-GTGCG          TTTCGGCTTCGGCCA  54 261
         def  615309 ..  615326 +  -2.7  -3.57144   GAAACGGGAATCGTA             T-GTGCGG TGC CCGTACCA             TTTCCGGGTCCGCGC  49 62
         fmt NONE
        rsmB NONE
LTC53_RS02625  619372 ..  619382 +  -2.4  -2.76492   TCGCCTGCGCGAGCA                 GGAC AAG GACC                 GTTTCGAGTGAGTCG  38 4
LTC53_RS02630 NONE
LTC53_RS02635  621918 ..  621961 +  -6.4  -2.83715   CCGCTGCCCCGGATA CCGAGCGCCATGGCCGACGC CGCC GCGACCACCTTGCCGCTCAG TCTGGTGGTGATGAC  48 101
LTC53_RS02640 NONE
LTC53_RS02645  623999 ..  624015 +  -7.9  -3.39327   GCGGCGAGCGGGTCA              GCCGCAG CGC CTGCAGC              TTGTCGATCTCCGCC  55 230
LTC53_RS02665  628085 ..  628095 +  -4.6  -3.36327   CCGGATCCGGGCGCA                 GCGT GTA GCGC                 TTGTAGGTCCACTGG  49 97
         dtd  629603 ..  629619 +  -9.4  -3.28712   CGGGGCGCTCCTGGC              GGAGCG ATTCA CGCTCC              TTGTCCGGCAAGCGG  61 43
        rpoD  631585 ..  631603 + -13.1  -5.29782   CGCGGCAACGGAAAA             GCCCCGC CATGT GCGGGGC             TTTTTTGTGGATGTG 100 53
LTC53_RS02685 NONE
LTC53_RS02690  636132 ..  636153 + -10.2  -2.70232   ATGGCCACGCCGGCG           TCGGCTTC GCGCAG GAAGCCGA            TGATCTGCTCTTCGG  57 439
LTC53_RS02725 NONE
        treS NONE
        glgB  649339 ..  649359 + -14.1  -2.82516   GGGCGACTAACGGCG            TCGCATCGA CCG TCGATGCGA            TCTGCTGATGAGCGC  71 54
LTC53_RS02740  649756 ..  649771 +    -9  -2.55392   TTCCAGGTTCGAATC              CTGGTG GGCC CACCAG               TAAATTCAATGGCTT  54 11
LTC53_RS02755 NONE
LTC53_RS02760 NONE
LTC53_RS02765  656274 ..  656309 +  -2.4  -2.89564   CCTGCCCGCCCTCAC    GATGAGACGGCG-TCGT CAT GCGGGCGCCGACGGATC    TGTATACCCTCAAGG  40 103
LTC53_RS02770  656820 ..  656835 + -11.8  -6.02914   AGCCGCACGGCATGA              CCCCGC TTCG GCGGGG               TTTTTTTTCTGTCGC 100 49
LTC53_RS02800  661400 ..  661413 +  -9.5  -3.55444   CGGCCGGGTCCGCGC               CCCGC TCGG GCGGG                TTTCCAGGATCGAAC  64 78
LTC53_RS02805  662009 ..  662055 +  -5.7  -3.27298   CTGCATCGGCCGTGA CCGC-ACGACGCCAGGTCGCTG CACG CAGCGGCCTCGCAGTGTCGCCG TTGCTGCTTCACCGC  51 26
LTC53_RS02825  664119 ..  664130 +  -4.4  -5.75538   AACTCAAAGCACATA                TTCG GTCA CGAA                 TTTTTGTTTTTTCCG 100 100
LTC53_RS02830  666542 ..  666565 + -18.2   -4.4078   ACTGCCTGCTGACGA          CGCCGATGCG GCAA CGCATCGGCG           TTTTCGTTGCGGCGC 100 67
LTC53_RS02840  668563 ..  668588 +  -5.3  -3.72576   CTGCTGCGACACGGT         GCGTGCCGC CAACGCCT GCAGCGCGC          TTTCCTCGGCCGGAC  58 394
LTC53_RS02885 NONE
LTC53_RS02890  678737 ..  678753 +  -7.2  -3.09635   AGCCGGAAAACACCG              GCGGGT TCATT GCCCGC              TTGGCTGCTGCCCAT  52 72
LTC53_RS02895 NONE
        poxB  682460 ..  682485 + -11.1  -2.61943   CGGCAACGCGTCTGT         GCATGCGCGGCG GCT CGCCGCAC-TGC         TACCTTCCCTTTTTT  59 52
LTC53_RS02905 NONE
LTC53_RS02910  685641 ..  685655 +  -5.6  -3.06162   AGTGGATGAAGCGCA               GACACC CGT GGTGGC               TGTTCGCATGCACTA  47 384
LTC53_RS02915 NONE
LTC53_RS02920  687310 ..  687355 + -10.9  -3.10939   CCAAGCACTGAACCG GGCAGCGCGGGGGTGGTCGCG TTGA CGCGACGGCCCCTGCATCGCG TATCGTTTTGCGGTT  64 30
LTC53_RS02925  688916 ..  688931 +    -9  -3.59979   GGCGCTGGAAGGTCC              GCCCAT GATG ATGGGC               TTTCAGATGACACAG  63 196
LTC53_RS02960  698239 ..  698273 +  -9.1  -3.06183   CTGTTCGAACCAGCG    CCGGCGCTGCGCCAGC TGCG GCAGGCGC-GCGCGGA     TTGCCTCGCGGTGGC  55 478
LTC53_RS02970 NONE
LTC53_RS02975  701043 ..  701082 +  -6.4  -3.76048   TTCGATCAAAAGCAG  ATGTTGCCGCGGCGCAC AATAAAG GTGCGCTGCG-CACCAC  TTGTGTTCGTTGAGG  62 512
LTC53_RS02980  702603 ..  702623 +  -4.5  -2.62184   AGCCAATGGGCTGCG            GCCGGCGCG GCG CGCGTCTGA            TCCTCTCCACCGAAG  42 5
        nirB NONE
        nirD NONE
LTC53_RS02995 NONE
        cobA  709724 ..  709739 +  -4.6  -3.30124   AACGCAGTGGCGGGC              CTTCCG GCTT CGGACG               TTGTCGCGGCTGAAG  49 510
LTC53_RS03040  723300 ..  723324 +  -7.7  -3.71848   CAGGAAGCCGGTATG          CGCCGGCAGCG TCG CGGTGTCGGGG          TTCTTCATGCCAGAG  64 134
LTC53_RS03050  725329 ..  725366 +  -8.2  -3.02043   TGGCGGATGGCTGAA   CGGACCTGCCTGCGCC CAGGGC GGCGCATGCTTGGCCG    TCTTCGCGAAAGCTT  55 337
        mdoH NONE
LTC53_RS03060  728264 ..  728282 +  -7.3  -2.62184   TGCGGCGCGGATGAC             GGCCCGC CGGCA GCGGGGC             TACTATGCGGCGAGA  47 91
LTC53_RS03065  729118 ..  729141 +   -11  -3.28924   TTGCGTTGACCGGGC          GTGCCG-CCTG TGC CAGGGCGGCGC          TTGTCAGCAAGCGTG  66 88
        hemC  730228 ..  730247 +  -3.4  -4.63932   GCGACAGATTGCCAA            GGCCACTG CAAT CACCGGCC             TTTTCTTGGCCCATC  71 121
LTC53_RS03080  732939 ..  732969 +  -7.5  -3.04144   CGCCTGCACATGCAG      CGCCGC-GTCCTCGC CCA GCGGGGTCAGCG-CG      TATTCCACGTGCGGC  52 212
LTC53_RS03095 NONE
LTC53_RS03100  736581 ..  736628 +  -7.7  -3.69354   GGTTGAAGGATTGAA GGCTCGGTAGC-GGATGGCTGCA GCGA TGCAGCCGCCCCGCTGC-GGGCG TTTGCAGTTCTGGCA  63 27
LTC53_RS03120  741697 ..  741745 +  -7.1  -2.81547   GAAGTAAGGCGGATT GGCCTGGCGTTCTGTCGCGGCTG AAG CCGCTCCTACAGTGCACCCGGCC TGCTTCCTGTAGGAG  50 34
LTC53_RS03125  742434 ..  742444 +  -8.2  -2.51471   CCACAGCGTGGCAGG                 CGGC ACA GCCG                 GTTCATGCCCTTCTG  51 70
LTC53_RS03130 NONE
        dapF NONE
LTC53_RS03140 NONE
        xerC NONE
        hslV  745839 ..  745866 +  -7.6  -2.53263   AATCGGCAATGGGGA        ATCGGGAATCGC AACC GCGGTTCCCGTC         TCCGTTGCCGATGAC  49 40
        hslU  747331 ..  747357 + -13.7  -3.21276   CTGCGACAGCTTGCA         TGCCGGTGTGC AGTAG GCGCGCCGGCA         TCTTGTGGGAGCGAC  73 53
LTC53_RS03170  752457 ..  752481 +  -9.9  -2.86164   CGGCGCGCACTCAGG          TCGGCGCGCAC TCA GTCCTCGCCGA          TGTCCTCGTTCCACA  59 44
        ubiE  753917 ..  753934 +  -7.7  -3.05463   CGGCGCTGGCGATGC             GTCCCTT GTGG GAGGGAC              TTCAGTCCCGACGCT  53 135
LTC53_RS03185  756070 ..  756082 +  -4.7  -3.16217   GGCGCATGGCCCGTT                TCCGG TTC CCGGC                TCTTCCATGTTGCTG  47 139
LTC53_RS03190 NONE
LTC53_RS03195 NONE
LTC53_RS03200  758542 ..  758552 +  -3.2  -4.56597   GTGCCAAGGCTTGTT                 GTGG GAG CTAC                 TTTTTGCGGGAGCGA  69 156
LTC53_RS03215  763233 ..  763281 +   -10  -4.21768   TGCCGGCCCCGCGTC CGCCACCGTGCCCGCGCCCCGG CCCGA TCGAGCCGCGAGCGCGCTGTCG TTTTCCGATTCCTTC  85 102
        mreC NONE
        mreD NONE
        mrdA NONE
        rodA  768238 ..  768265 +    -4  -3.92869   GCCAACGCAGCGCAT        CGTCGAT-CCGGC CTG GCCGGTGTCGTCC        TTTCTGCGTCCGTCC  59 249
LTC53_RS03240 NONE
LTC53_RS03245  771280 ..  771331 + -17.2  -3.60098   TGTGATCGGGCGTTG CTG-GTTGCGCTTGCGATGCGCTGC TTC GCTGCGCATCGCCGGCGCCGCGCGG TTTGGCCTGGGCAGT  89 218
        mltB NONE
LTC53_RS03260  775574 ..  775589 + -11.8  -5.81032   AGTGAGTTGAAAAAA              GCCGGC GTAC GCCGGC               TTTTTTTTGGGATTC 100 36
LTC53_RS03275  778027 ..  778072 +  -4.6  -4.45117   CGAACTTCCAGTTGC CGCGCAT-C-ACCGCCAAGCCG AAGC CGGCTTGGCCGACGAAGGGGCG TTTCTTTACGCTGTG  72 179
LTC53_RS03285 NONE
        lipB NONE
        lipA  781265 ..  781284 +    -7  -3.19246   GCCGATCGGCAGGCT            GCCGGCGC CGGC GTGGCGGC             TTGAGTTCGCCTTGC  52 2
LTC53_RS03300  783738 ..  783762 + -19.3  -4.86621   CGCGCGAAAACCGAA          CGCGCCATCGC CCA GCGGTGGCGCG          TTTTTCGTTGGGCGT 100 57
LTC53_RS03310  786113 ..  786138 + -12.5  -2.53715   CAGGCGCGAGAGGAT         CAGCGCGGCGCC TTT GGCGC-GCGCGG         CTTCGTCCTCGTCGC  62 365
LTC53_RS03320 NONE
LTC53_RS03325  789542 ..  789560 + -13.2  -2.94925   CTATCAGCCCGGCAG             TGGTGCCA AAT TGGCACCA             TGTATGGTGGGCTAT  70 74
LTC53_RS03335  791882 ..  791909 +  -6.1  -2.58767   GCCGCCGCTGCGGTC        GGCGACGGCAC CACACC GCGCTGACGCC         TGCGTTCATCCTTCG  46 2
LTC53_RS03340  792464 ..  792492 +   -16  -4.36127   CCCGAAGTAAAAAAA        CGTCCTGGCGGA CAGCA TCCGCCGGGGCG        TTTTGCGTTGTTGCA 100 73
LTC53_RS03370  799242 ..  799255 +  -5.9  -3.12668   TACGATTCACCCGCG               GCGCT GCCT GGCGC                TGTTCCCATTTCCCA  51 82
         gmk  799944 ..  799986 +    -2  -3.71527   AGGAAACTGAACGGT GGGCGGTTGATT-TCGGCCG GTTCG CGCCCTACAATCG-CTGCCC TTTCCCTCATTCGAA  51 47
        rpoZ  800362 ..  800390 + -15.4  -4.24002   GCTCGAATCGTCTGC       CG-AACAGCCCGC ATCC GCGGGCTGTTTCG        TTTTCGGGTTTGCCG  95 53
LTC53_RS03385  802724 ..  802735 +  -3.6   -5.4505   ATTTTCGCAAGTTCG                GCGC ATGT GTGC                 TTTTTTGTTGGAAGG  90 143
LTC53_RS03405 NONE
        recG  806934 ..  806948 +  -5.6  -4.52589   GGGATTTTCGCAAGT               TCGCAG CTT CTGCGC               TTTTCTGTAGGAGGG  74 90
LTC53_RS03415  808288 ..  808327 +  -8.4  -2.52464   GGGCGCGGGCGGCCG  CGCCCGGAGCGCTGCGCCG GCA CGGCGCACC-CTGGTGGCG  TGAATTCCGCGCAAG  51 60
LTC53_RS03420  808681 ..  808705 + -17.9   -4.6902   GTCGCAGTGGTAAAA          GAAGGCCGCGC CCT GCGCGGCTTTC          TTTTTGGGCTTATCC 100 48
LTC53_RS03425  810269 ..  810287 + -13.8  -5.64274   GCTGTGGCAATCGAA             CGTCCCGC TTC GCGGGGCG             TTTTTTTATGGGTGG 100 56
LTC53_RS03430  811015 ..  811025 +  -6.8  -3.21924   TGAACGGACTCACTA                 TCCG ATC CGGA                 TGTTGTGCCGCGTGC  54 60
LTC53_RS03435  812361 ..  812400 +  -9.9  -3.41051   CGCCAGCTGCGCCTG  CG-CGCTCTCGGCGCGGT TGACC ACCGCGCGGAACGCGGCG  TTCTCGTGGCGGTCC  65 162
LTC53_RS03465  820237 ..  820292 +  -6.9  -2.90615   GTGCGGTGGCATGAG C-CGGCGCCTGCGCCTCGCATCGCTT GTCGATG AAGCG-TGCGGATCGC-GGCGTCGAG TCATTTGCGGAAGCT  50 27
LTC53_RS03470  820740 ..  820770 +  -6.7  -4.07568   CTCTCCTCGGCCTCT      GCGCCGGCCTGCGC GCCG GCGT-GGCCGGGAC       TTTTCGCGACCCACC  67 144
LTC53_RS03475 NONE
LTC53_RS03480 NONE
LTC53_RS03485  824625 ..  824653 + -12.5  -4.56597   GCGCAGCGTCAGGCT       GGGAAGGCGGCC CGGATT GGC-GCCTTCCC        TTTTTGCCCGGCGCG 100 53
LTC53_RS03505  829099 ..  829109 +  -3.2  -3.34222   AGCTCAAGCCCTTGA                 TCGG CGG CTGA                 TTCTGCGCTGGTCAT  46 15
LTC53_RS03510  829966 ..  829986 +  -7.5  -3.56273   CGGAGTCTGCTTGCA            CGGCGGATT TAC GATCCGCCC            TTCTATAATCGTGGC  60 77
LTC53_RS03515  831661 ..  831675 +    -7  -3.08283   TCTCGCGCAACTGCT               GCGGGC TGC GGCCGC               TGTTGAGGTCGTTGT  52 384
LTC53_RS03525  832616 ..  832635 +  -2.7  -2.78977   GCTGATCCTGCTGCC            GCGCCTG CTGTGA CGTGCGC             CTGTCTTTTTTACCG  40 13
LTC53_RS03530  833453 ..  833472 +  -9.2  -3.24232   CTGCGTTTTCACGGG            GGGCGTGG CAAG CTGCGCCC             TGTCTTTACCCCGGA  61 60
LTC53_RS03535  834263 ..  834274 +  -7.2  -4.40298   GCGTTCCGAAGCAGG                CCGC CGCT GCGG                 TTTCTTCCTTTCGAT  75 155
LTC53_RS03540  835262 ..  835283 +  -6.5  -3.06696   GGCGCCTCGGGGAGT           TGGTGATGC GGCT GCTTCGCCA            TCTGTTCGCGCCGGC  49 20
LTC53_RS03545  835803 ..  835829 +  -2.8  -3.14931   TGGGTCGCGCCTGCC         CGCAGATGAAGC GTG GCGCCGTCTGAG         TTGATCGCGACTGCA  44 70
         lgt NONE
LTC53_RS03555 NONE
LTC53_RS03560  838490 ..  838528 + -10.1  -2.62184   GATTACCGGCGCAGG  CGTAGCG-CGCCGTAGCG CATT CGCGCCGGCGGCGCGGCG   TGGTGTAGGAGCGGC  57 11
        ubiH NONE
LTC53_RS03615  850563 ..  850601 + -14.4  -2.61695   TCGCTCCTGTGGGAG   CGGCAGGCGCTGCGGCGG TTG CAGCCGCAGCGCTGGGTG   GTATTTGGCCATCGG  69 69
LTC53_RS03630  853685 ..  853697 +  -6.9  -3.29511   CCGCTCCTACAGGGG                CGCGC CTA GTGCG                TTCTCGCAGCCTCAG  54 172
LTC53_RS03665 NONE
LTC53_RS03670  860297 ..  860319 +    -9  -2.73124   CGGCGCTGGGCTTGC           GCTGCGCGCC GCC GCCGCTCAGC           CTTTCCCGAGTCCCG  55 124
        msrA  861734 ..  861791 +  -2.4  -3.33922   ATCGGCGCGATCTGC GCGCCGTCG-CCCTGGCCGGGCGACAGC TTGC GCGGCAGCTCG-CCATGGTCGGCGTCGA GTTTTTCCAGCAGCT  45 343
        prmC NONE
LTC53_RS03725  868895 ..  868910 +  -6.1  -2.78384   TAAGCACGCTGGGTG              TCCGC GCCTCG GCGGA               TGTGGTGCAGCAGGC  47 419
LTC53_RS03750  876601 ..  876638 +  -9.1  -3.14132   CAGCGCCAGCGCCCA   CTTC-GCGCGTGCCGGCA CCG TGTCGGCGTGCGCCGGAC   TTGCTCAGGCGGCGG  59 180
         bla  879135 ..  879149 +  -2.8  -3.94812   GCGCCGCCGCACCTG               CGAG TGAACGC CTCG               TGTTTTTGCATAGCG  58 139
LTC53_RS03805 NONE
        lolB NONE
        ispE NONE
LTC53_RS03820  891699 ..  891722 +  -2.4  -3.68859   TGTGCGGGGGTTCGA          CAGGT-AAGAG CTT CGCTTCGCCTG          GTTTTTTCGGTTCCA  51 81
LTC53_RS03825  892877 ..  892887 +  -8.2  -3.33696   GAGTCCTCAAAACTG                 CCGC GAG GCGG                 TTCATTCAACCAAGG  58 154
LTC53_RS03830  893564 ..  893585 +  -4.3  -2.90194   AGGACGGCAAATAAT           C-GCCTGCGC AGC GCCCGGGCCG           TGTGGTTCGGGCGCT  44 27
         pth NONE
        ychF  895453 ..  895494 + -13.5  -3.73224   TCTGAGCCGCATGCG CGCGTTCGCGCCGTGCCGC AGTC GCGGCGCGCGGGGGGCGCG  TTTCCTGCGACATCG  79 36
LTC53_RS03845  895721 ..  895735 +  -5.6  -2.71731   TTGTGGCAGTGCGGC               ATCCCG TAG CGGGAG               TAGTTCAACGGTAGA  45 50
LTC53_RS03850 NONE
LTC53_RS03855 NONE
         tuf  897152 ..  897175 +  -8.8  -3.59262   ATCAAGTAATGCCCG          CTGTGGCGAT TTCG GTCGCCGCGG           TTTGACGATGTGCAG  62 32
LTC53_RS03865 NONE
        secE NONE
        nusG  898460 ..  898495 + -12.5  -3.86346   TAGCTGTCCAGGCTC    GCCGCCTGGCAG-GGC AGGAA GCCGCCGCAAGGCGGC    TTTCTGCGCACGTCA  81 95
        rplK NONE
        rplA  900067 ..  900096 +  -4.7  -4.41348   ATGGAGGCCGCCCAG       GACCGCACGCGGC AGGA GCCGCAAGCGGAG        TTTGTTTGAAGCAGG  69 370
        rplJ  900734 ..  900744 +  -8.2  -3.17075   GCGGAAGACGCCCCG                 GCCG AAA CGGC                 TTAAGTTCGCGACAC  56 11
        rplL  901225 ..  901248 +   -16  -3.63968   AGGTGATGCATCAAA          GGCTGGGGAC GCAA GTCCCCGGCC           TTTGGCCGTTTCAGG  85 67
        rpoB  905676 ..  905689 +  -2.3  -3.34895   ACTCGGAAAAGCCAG               AAGCG CGAG CGCTC                TTGCTTCCGAGTCCC  44 71
        rpoC  910153 ..  910175 + -16.3  -3.67175   ATACTTTCCTGTCTC           GGCAGGCCG TCCTT CGGCCTGCC           TTCGTTTTCACGCAT  88 171
        rpsL NONE
        rpsG NONE
        fusA  913326 ..  913368 +  -9.9  -3.31322   TGAGATCAGCGTGAC GGGATTCGGGATTCGGG-CAT CGC AAGTCCCGCATCCCG-GTCCC TTGTCCCCCATTCCG  63 38
         tuf  914636 ..  914655 + -12.8   -4.8622   GCGGTTCCAGTAGAA            GGGTCGGC GCAA GCCGGCCC             TTTTTCGTTGCGAGG 100 67
        rpsJ NONE
        rplC NONE
        rplD NONE
        rplW  916957 ..  916978 +  -2.2  -2.50994   CGACGTAACGGCCAA           GGCCTGAGG TCCAT CC-CATGCC           ATTGATGAAATTCAA  37 19
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ NONE
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN  921724 ..  921741 + -11.3  -4.95758   CTGTTCAGTCAACGA             GTCCGAC GCAA GTCGGAC              TTTTTGTCGTATAAT 100 101
        rpsH NONE
        rplF  922876 ..  922893 + -12.7  -2.76696   CCTGCTGCGAGGAGC             CCGGCCA TCCA TGGCCGG              ATTCTTCGACGCAAA  65 48
        rplR  923326 ..  923372 +  -5.1  -3.49475   GGGTGCGGCGTCCAC GCCGCGCCCGACCTGCCGATGCG GGT TGCATCGG-ACCTTGG-CGCGCC TTGTGTGCGCGTCCG  54 48
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY  926220 ..  926247 + -15.6  -3.12351   CACTCCCCATGCCGG        GCTTGCGGAACC GAAC GGTTCCGCGGGC         TTCCATGTAACCCGA  78 227
        rpsM NONE
        rpsK  927119 ..  927137 +  -3.1  -2.71416   GCGTCGCGTCTAAAG             GAGCGAT AAGAA ATGGCTC             GTTATATCGGTCCTA  40 28
        rpsD NONE
        rpoA  928815 ..  928853 + -16.6  -3.05384   GCTCGGCTAAGCACA   CGCACCTGGCCGATGCCG CAC CGGCATCGGCCGCGGACG   TTGCCTGCCAGCGCA  79 31
        rplQ  929464 ..  929480 + -10.8  -5.08824   CCGTGTCAGCAAGAA              GCCCGG CATGT CCGGGC              TTTTTTGCGTCCGGG 100 53
LTC53_RS04065  930451 ..  930474 +   -16  -2.88579   CCATCCATGCATCTA          GGCCG-GCCCG TCG CGGGCGCGGCC          TGTCTGCGCAGTTGC  76 352
LTC53_RS04075 NONE
LTC53_RS04080  935640 ..  935667 +  -3.5  -2.52543   CGCACCCTGCAGGAG       CCACTGTCAGCCG CGAC TGGC-GA-AGTGG        TGAATTGCCCGAACT  40 134
LTC53_RS04095  938952 ..  938968 +  -2.1   -4.3586   CCGCGCCCGAGCCTC              GATGACG ATG CGTCCCC              TTTTGCTGTGCATGC  65 109
LTC53_RS04100 NONE
LTC53_RS04105  940378 ..  940402 + -21.5  -2.59927   CGCGATCGCGTCACC          GAACGCCGGGC TCT GCCCGGCGTTC          TGCGTTGTGCGGGTT 100 48
LTC53_RS04110  943348 ..  943380 +   -12  -3.28712   ATGGATTACGCGACA     CTGTACCGGC-GCTC TATC GAGCAGCCGGAGCAG      TTCTGGGCGGAGCAG  68 171
LTC53_RS04125  944283 ..  944309 +  -7.3  -3.05715   GCAGCAAACACCACC        CGCATGCGATGC GGCT GCATCCC-TGCG         TTCACTCCAGACCTT  51 111
LTC53_RS04160  953813 ..  953852 +  -2.7  -3.72576   CCGCGCTGCCCCAGC CTGGCGAC-AGC-AGGCCG TAGG CGGCCACGTACGGCGCCAG  TTTGGTGAAGGCGGG  53 500
LTC53_RS04170  955484 ..  955526 +  -4.9  -3.57263   AGCAGCCATACCGTG CGCGCCGGCGC-TTCCG GCTGCGGCTTG CGCAATGCGCCG-CGCG TTTCGAACTGCGGGT  54 384
LTC53_RS04205  963048 ..  963074 + -18.1  -4.89852   GCTTCATGCTTCAAG         CAAAGCCCGGC CTCGC GCCGGGCTTTG         TTTTTGTGCGTGTGG 100 47
LTC53_RS04210  963864 ..  963888 +  -4.2  -3.14132   GCCTGCGTAGCGAAG         CGCGAGCGGTG AAAC CTCC-TTCGCG          TTCCTGCCGCCGCGC  45 64
LTC53_RS04215  964962 ..  965000 +  -8.1  -3.05384   AGCTGTTCGCGGGTA  TGCGCG-GCGCTGATCTG GGTG CGGATCCGCGCTTGCCCA   TTGGGTACCACCGGG  52 279
LTC53_RS04225 NONE
        cysT NONE
        cysW NONE
LTC53_RS04240  970380 ..  970398 +  -3.1   -2.6528   ATTGACCCGAAGCCC            GCAGC-GGC AAG GCCTGC-GC            TGACTTGGTTTGTCT  39 214
LTC53_RS04245  971250 ..  971275 + -16.2  -4.85599   ACCGTCGCGAACGAA         GAAGGGCGCC TTGTTT GGCGCCCTTC          TTTTTGTACGCTCGC 100 51
LTC53_RS04255  974809 ..  974832 +  -9.6  -4.18018   GGGGGTTTTCGGCGA          CGGAGCAGGTA TCA TGCC-GCTCCG          TTTTCGCTCGCGAGA  80 134
LTC53_RS04260  975666 ..  975686 + -18.3  -4.56597   AATACCCCGAAGGGG            CGGCGCGCA CGA TGCGCGCCG            TTTTTCGCAGGCACA 100 167
        folC  977153 ..  977187 +  -2.8  -2.65298   CTTGCACTGGCTGCA    TTC-AGCCGGCTGACC CCGAC GG-CAGCCGGCCCGAC    CTTATAATCGCTGCG  39 13
LTC53_RS04270 NONE
LTC53_RS04275 NONE
        purF NONE
LTC53_RS04285  981922 ..  981961 + -20.7  -3.17723   GTGGCAGTTTCAGGG  GCGCTCCGGTGCAGGCC GCGCCA GGCCTGCGCCGCGGCGC   TTCACTTGCCGATCC 100 449
LTC53_RS04295  982795 ..  982815 +    -6  -3.57144   TGGCCACGACCTCGG            CCGGCGCC ACGTC GGTGACGG            TTTCGAACTGCGCCG  57 253
        grxC NONE
LTC53_RS04350  994228 ..  994258 + -14.7  -4.11692   GCGCCGGATCGGCCT      GGCA-CGCGCCGCC CGCA GGCGGCGCGCTGCG       TTTTGCGCCTGCCTG  89 44
LTC53_RS04355  995416 ..  995433 + -14.1   -5.4505   GCAGAAAACAAAAAA             GGGCGCC ACCA GGCGCCC              TTTTTTGTTACCGGC 100 49
LTC53_RS04365 NONE
LTC53_RS04370  996625 ..  996659 +  -3.5  -3.03159   GGTTACAGGTTCGAT     TCCTGTCGGGCGC GCCACACCG GTGCCGGATAGGG     TGTTGCAAGAGTTCA  44 9
LTC53_RS04375  996766 ..  996783 +    -4  -3.01924   CCCATTGATCGCGTG             ACCCGC TGCTTC GCGGGG              TGTTGCAACGAAGTA  44 37
LTC53_RS04380  996914 ..  996941 + -14.2  -5.60993   GCCCACCAAATCAAG        CAGCCACTTAGC GCAA GCCAAGTGGCTG         TTTTTTTATGACCCA 100 33
LTC53_RS04385  997337 ..  997394 +  -7.3  -5.27335   CTCGATCGACGGGCG CGCGCCTGGCCTCCCGGGCCGCCGACCG GGC CGGGCGGCATCCCCTGCG-TCGGGCGCC TTTTTCTTTGCCGGC  95 270
LTC53_RS04390 NONE
         tig NONE
        clpP  999846 ..  999885 +  -9.3  -3.79906   AAACGCAGCGTATTC CGCAGGGTCGGGGCCGGGC TAGC GTCC--TCCCGGCCCTGTG  TTATTCTCGAAATCG  71 58
        clpX 1001325 .. 1001355 + -18.3  -4.83169   GCTCTTGCATCGTCC       AGCCGATGGCCCC ATAAC GGGGCCATCGGCA       TTTTTATGCCCGCCT 100 122
         lon 1003920 .. 1003931 +  -3.6  -4.19238   GTAGCTCAAACCCGC                GCCG TTAC TGGC                 TTTTCGGCTTGCGCG  65 66
LTC53_RS04415 NONE
LTC53_RS04420 NONE
LTC53_RS04425 1004579 .. 1004606 + -14.2  -3.86346   CTCCGCCAGTTGCAC        CGAAGCCCCTGA GAAA TCGGGGGTTTCG         TTTCTCGAAGCATCC  83 33
LTC53_RS04430 1004776 .. 1004801 + -17.7  -5.41143   GCCAGTTTTGTACGT         GAAACCCCCGA GCGA TCGGGGGTTTC          TTTTTTTCCGGGATG 100 37
LTC53_RS04435 1006960 .. 1006990 +   -22  -3.53811   CCTGGCGGTGTGATG       CGAACAAGCCCGGT CCT GCCGGGCTTGTTCG       TTTCCGGCGGCTGCG 100 51
LTC53_RS04450 1010204 .. 1010216 +  -9.1  -3.18126   CGCCGGTACGCTGGC                GCGGT TCG ACCGC                TTCCATCTGATTTCT  59 3
        rnhA NONE
        dnaQ 1011758 .. 1011793 +  -7.4  -3.18264   TGCGCTGCAGTCGTC    GTGGCCGAGCGTGGCG GCGA TGCCGGGGTCGTCCAC     TTCCTCGGTCAGCCC  53 312
LTC53_RS04470 1012659 .. 1012674 + -11.8  -5.61881   CCAGTTTTCGCAGAA              GGCCCC GTCA GGGGCC               TTTTTGTTTTTGACG 100 38
LTC53_RS04475 1013579 .. 1013591 +  -6.2  -3.37612   CCCGGACGAATCCTG                CGCG GTTGG CGCG                TTGCTTGACGTTAAA  55 433
LTC53_RS04490 NONE
LTC53_RS04495 1016260 .. 1016276 + -10.8  -3.01712   GCGCGCCGCAGGTGC              CGGCGC CATGA GCGCCG              TGTTGCGCCCGCCGC  62 15
        moaA NONE
LTC53_RS04505 1017676 .. 1017696 +  -3.8  -2.78384   CAGGGCACGCCGATT            CCCGGCGC CGCCT GAGCAGGG            TGTCGTGGGAGCGGC  41 11
        moaC 1018225 .. 1018257 +  -2.6  -3.34715   CAAGCGCGACGTCGG     GAGCGCGG-CATGAG CGTG CGCGTGACCGTGCTG      TATTTCGCCAGCCTG  44 13
LTC53_RS04515 NONE
LTC53_RS04520 1019126 .. 1019142 + -15.1  -3.41222   ACCATAGAGACGAAA              CCGCGCC AGC GGCGCGG              TCTTTCCCCTTGAAC  80 240
LTC53_RS04530 1019785 .. 1019801 +  -5.8   -3.1085   ACGCGTATTGCACCA             CGCCGCG GCAC CGCG-CG              TCTTCGCTGACTTGC  49 222
LTC53_RS04535 1022124 .. 1022136 +  -4.7  -3.59262   ACTCAGTTGCGGCTC                TGCGC GTA GCGCC                TTTCAAACTCTACAG  52 83
        radC NONE
LTC53_RS04550 1024680 .. 1024692 +  -3.3  -4.14392   CGAACATCTTCCACT                GTCGG AGT TCGGC                TTTTAAGCCTTGACC  63 168
LTC53_RS04560 NONE
LTC53_RS04565 NONE
LTC53_RS04570 NONE
LTC53_RS04575 1034306 .. 1034338 +  -6.2  -3.59979   GCGAAGTCCCAGGAA     CTCGG-GGCGATGGC CAAT GCCAAGGCTGCCGAG      TTTGCGCTGGGCAAA  56 286
LTC53_RS04585 NONE
LTC53_RS04590 1036258 .. 1036291 +    -3  -4.46073   ACCAACATGGTGTCC     CGCGCAGG-CGTGCC TTCCT GGAACAACCTGCGCA     TTTCTTCTCTTGAAA  68 337
LTC53_RS04625 1042313 .. 1042335 +  -7.6  -3.63515   CAGCGGCCCGGGTCT           CGTAGACGCC GGT GGCCTCTTCG           TTCTTGAGCGTGGCG  60 181
LTC53_RS04690 1052413 .. 1052448 +  -4.6  -3.54424   TCGGGACTCGGGACT    GGGGACTCGTAGAAGCG GGT CGTTGC-ACGCGTCGCC    TTTCAGGACATGGCA  52 71
        recR NONE
LTC53_RS04700 1053616 .. 1053633 + -12.7  -4.79352   CGGGCAAACGGAAAA             CGCCGCT TTTC AGCGGCG              TTTTCTTCTCCATCA 100 75
LTC53_RS04725 1060149 .. 1060189 +  -8.7  -2.73875   TTCCAGCGACGCCAC  CATCGAGCGCGCACGCGCC GCC GGCGCGCAGGTGCGCGAAG  TCGTATTGCCGGGCA  52 236
LTC53_RS04735 1063267 .. 1063313 + -12.9  -2.79501   CGCGGCCTTGGCCCG CGCCAGGCGCTGGGCCA-GCGCC AGC GGCGCTTCGCCCGGCAGC-GGCG TCTCCTCGACCTGTG  63 465
LTC53_RS04745 1064049 .. 1064069 +  -6.8   -2.5409   GCTGAAGAAACAGTA           GCGG-TCGG CCCG CCGGCCCGC            TGCCTTGAAGGTTGT  47 25
        rpmF 1064349 .. 1064389 +  -3.2  -3.01712   GTCGAAGAAGATTGA TTTGTG-C-CCGTCCCTCGC GCC GCGGCGGACGGAGTCACCCA TCTTCACAGGCCGCG  42 26
LTC53_RS04755 1065633 .. 1065671 +  -7.3  -3.59979   GGGTGCGCGCAGCGC  TGCCGTGGCCTGCGGCGG CGGC CCGCAGCGGGT-GTGGCG   TTTGCCGTGGCCGCG  58 230
        fabD 1066745 .. 1066761 + -10.8  -2.70932   CACCTCCTTTCCCCC              CGGCGC TTCGC GCGCCG              TCCTTCCCCAAGGAA  60 50
        fabG 1067621 .. 1067641 +  -6.8  -3.01712   TACACTATCCAACGC            GGCCATCG CAGCC CGATGGCG            TATTCGAACCACCAC  51 120
        acpP 1067977 .. 1068002 + -14.7  -4.58395   TCCGCGTGACAATCC         CATGGGGCCGC GCTT GCGGCCCTGTG          TTTTTACAGCGTCAA 100 82
        fabF 1069411 .. 1069421 +  -4.6  -3.54459   GCACGACGGGGATGA                 CGCT TCC GGCG                 TTTCGCCGCCGTTCG  52 151
LTC53_RS04780 1070840 .. 1070869 +  -6.9  -2.78463   CCGTGAGCGGCACGG       TCGCGATACCGGC CGAT GCCGGCCGCGCGG        TATCCTGCACCCCGT  48 35
        mltG 1071950 .. 1071993 +  -3.1  -3.15544   CAGGCGCGCAGCGGC GCGGCGGTGACGC--CATGAGC GAG GC-CGTGCTGCGCCACCATCGC TTCGTCAGCCTGGAA  44 8
         tmk NONE
LTC53_RS04795 NONE
LTC53_RS04800 1073984 .. 1074011 +  -5.5  -2.85668   GTGCGGCATCTGTGG        GGGCCGTTGACG CCAGC CG-CAGCAGCCC        TATAATGTGCGGCTC  46 53
LTC53_RS04805 1074131 .. 1074147 + -10.8  -4.72272   AAGTATTTACGAGAA              GCCGGC CTAGT GCCGGC              TTTTTCATAACAGCA 100 48
LTC53_RS04810 1074867 .. 1074892 +    -2  -3.02511   GAGATCGAATGATGT        TGCGTTGTCGGA ATCT TCCGA-AA-GCA         TGTTGCGGCGATCGC  41 29
LTC53_RS04815 1075848 .. 1075875 +  -9.2  -3.06796   CGAGGCGCCCCCACT        TGCGCGCGCTC CTGGGCC GAG-GCGCGCA        TTGGCTAAAATCCGG  57 82
LTC53_RS04830 1077971 .. 1077984 +  -8.1  -3.58802   AGCATCGGGCCAGGC               GCAGC GATT GCTGC                TTGTGTCCTGCTTTC  60 420
LTC53_RS04840 NONE
LTC53_RS04845 1079781 .. 1079793 +  -9.1  -3.74872   CAATTTCCTGGTCCG                CCAGC ACT GCTGG                TTTCCTCCAGTGGAT  68 80
LTC53_RS04855 1080927 .. 1080939 +  -4.7  -3.53012   GCGATCAGGTGGCGC                ACGCC GTC GGCGG                TTTCCAGGCGGCCGC  52 158
        prpB 1089198 .. 1089215 +  -2.5  -2.78384   TCCACGCCGGCACCA             CGCCGCC ACAC GGCCGCA              TCTGCTCGCGCGCGG  38 79
        prpC 1090456 .. 1090472 +  -8.7  -3.35597   AGACCTTCGTGCCGA              TCGACCG GCG CGGTTGA              TGTTTCGGGGCTCGG  60 9
        acnD NONE
LTC53_RS04900 NONE
        prpF 1095008 .. 1095058 +  -8.2  -4.96028   CTGGGTGCGTGTGCC GGGCGAGATTTGCTGAGCCGGCG GCATGG CGGCGTCGCCGCAAATC-CGCTC TTGTTTTTTTTAGGA  88 10
LTC53_RS04910 1097612 .. 1097633 + -14.4  -5.04249   GCGATGCACCACGGA           CCGCCGGC TATCAT GCCGGCGG            TTTCTTTTTTAGGGA 100 56
LTC53_RS04915 1099158 .. 1099168 +  -8.2  -3.57144   GACTGCATCCAGCCT                 GGGG GAA CCCC                 TTTGCCCCTCGGCGG  62 478
LTC53_RS04920 1104494 .. 1104518 + -11.4  -3.34398   AGGCAATGCGTGGAA          CGATAGGGCC CTTGC GGCCCTAACG          TCTTTAGGGGGCGGA  68 121
LTC53_RS04925 1107683 .. 1107695 +  -3.4  -2.73124   GCATCCGTTTCACAC                CTTC CCTTT GAAG                CTTTCGCACCTCCGG  40 15
LTC53_RS04930 1108669 .. 1108706 +  -3.4  -4.19238   TCGAGAAGCGCTGAG  CGCGCGGTTCGCCACGCA CCTG TGCGTATCGA-TCGC-CG   TTTTCCGCTTGCGGA  63 27
        pbpC 1112749 .. 1112795 + -20.3  -3.21099   TTGCTGTAGGAGCGG CTTCAGCCGCGACATGAACTT ACCGA AGGTACCTGTCGCGGCTGAAG TTGCTCCTACAGGAG 100 85
LTC53_RS04955 1114722 .. 1114757 +  -8.8  -4.63527   ATGGTGCGCAGCATG    CAACCGGCCCGTTGCC GCAA GGCGGCGGGCCGACTC     TTTTTGAGGTGATGG  83 111
LTC53_RS04960 1115817 .. 1115843 +  -2.2  -4.66609   CCGGAGCTGCAAAAA         AAGCCGTTTTTT TGA AAAAATCGGCCC         TTTTTGCATCAAATC  70 173
        hflK NONE
LTC53_RS04980 NONE
LTC53_RS04985 1119982 .. 1120019 +  -7.6  -4.70659   GGATAATGCACAAAA   GCCGGCCGGGCCCGCTC CACAC GAGCGC-CTCGATCGGC   TTTTTCCGTGTAGGG  81 121
LTC53_RS04990 1121473 .. 1121489 + -15.1  -4.88407   AGGTCGTAAGAAAAA              GCCCCGC ACT GCGGGGC              TTTTTCGTTGAGTCG 100 50
LTC53_RS04995 1123164 .. 1123196 +  -7.6  -2.78816   CCGCTGTCCGCATTC     CAGGCGGCCGCGCCG AATG CGCCACG-CCGTCTG      TATCCTGCGCCGTCC  51 97
LTC53_RS05000 1125979 .. 1125998 + -10.8  -3.64703   GTGCAAATACCCAAA            TTGGGTAG AAGC CTACCCAA             TTTGGGTACGAGGGC  73 119
LTC53_RS05005 NONE
LTC53_RS05010 NONE
LTC53_RS05015 NONE
LTC53_RS05020 NONE
LTC53_RS05025 1130451 .. 1130464 +  -2.3  -2.95056   GATAAAGCCCTGGGT               CGAAG GTTA CTGCG                TCGTTGGTTTGTTGT  41 195
LTC53_RS05035 1132179 .. 1132189 +  -8.2  -3.25093   GCGATCACATGGAGC                 CGCC CGC GGCG                 TCTTGGTTAAACTCT  58 129
LTC53_RS05040 NONE
LTC53_RS05045 NONE
LTC53_RS05050 NONE
LTC53_RS05090 1143130 .. 1143141 +  -5.8  -3.53444   GGGTGCGGCCGCCGC                CGGT CTGA ACCG                 TTTGCGCCGCGATGG  54 18
LTC53_RS05095 1143935 .. 1143989 +  -2.7  -4.53602   GAGTCGCTTTCGCGC CGGACCCTCACCCCAA-CCCCTCTTCC GAG GGGAGAGGGGCTTCAGGCGGCTG-CCG TTTCTTTCGTGTCGA  69 106
LTC53_RS05105 1147901 .. 1147914 +  -3.7  -3.35522   TGATGCGGCCCTTGG               CGCGG TCCA CCGGG                TATTTGGCGGCGTTG  47 355
LTC53_RS05115 NONE
LTC53_RS05120 1157705 .. 1157715 +  -2.4  -2.88663   CTCGATGGCACGCCT                 CAGC GCT GCGG                 TGTCTGGCGCTGCGT  40 90
LTC53_RS05125 1159146 .. 1159195 + -16.2  -3.48276   CAACGCAGCGCCAAC GCAGCGCCGCCGCATCCCGCGC AACACA GCGCGGACAGCGCAGGCGCTGC TTCTCTCCGCCGCAG  85 181
LTC53_RS05130 NONE
LTC53_RS05135 1160926 .. 1160936 +  -2.4  -3.53733   GGAACGTTTCGCGCG                 CCGC TTC GAGG                 TCTTTATCGCATGAG  48 1
LTC53_RS05140 1161531 .. 1161552 +  -5.1  -2.70932   GGTCGCGGCCGCGGA           GCGACTGCGG TGA TCGCGGT-GC           TGATTCCGGCGCACG  45 13
LTC53_RS05145 1162542 .. 1162564 + -10.6  -4.15044   CCGCAGCGGCCACGC           CTCGGGATAA GTT TTGTCCCGGG           TTTGTTCCGGGACAG  81 329
LTC53_RS05155 1166380 .. 1166416 + -10.1  -2.78935   TGCTTGAGCGGGTTG    TCCTCGCGGTCCAGG CGGCCGT CCTCGATCGCGCGGA    TCTCCTCACGGATCT  57 127
       raxST 1170954 .. 1170979 +  -7.5  -3.08679   CCGCTGGCCGACCTC         GCGTGCAC-GGC CGC GCCTGAGCATGC         TGTTCCGTCGCCAGG  54 53
LTC53_RS05175 NONE
        raxB 1174437 .. 1174493 +  -2.8  -3.05463   GCCGGCCGGTGGGGC CGGCGCAGTGGCGTGCGTGGGCGCAATC CGC GATATTG-CCGCGCATGACCCCG-GCCG TTCCCTCCACCCGCT  42 89
LTC53_RS05185 NONE
LTC53_RS05190 NONE
LTC53_RS05195 1176764 .. 1176814 +  -9.6  -3.55444   CGCGGCGCTTACTGC GGCT-TGGGCGCAGGCGTCGCGG GAGCCG CGGCGGCGCCTGCCTGCACGGCC TTTGCCGCCTCCCAG  64 63
LTC53_RS05215 NONE
LTC53_RS05220 1183890 .. 1183907 +    -4  -3.95584   CCGCGACAGTCTCCG             TCGCCG TCAGGC CGGCGC              TTTCGTTCGTCGCGG  59 374
LTC53_RS05250 NONE
LTC53_RS05255 1189166 .. 1189189 + -10.2  -3.53012   ATGCGCCAGGATGCC          CGTCCCGACGC AGC GCGCCGGG-CG          TTTGCGGGCGCCAGC  67 40
LTC53_RS05260 1190923 .. 1190953 + -22.7  -3.85698   CATGGATGTGTGACA       CGAAACGCGCCGC TGCTT GCGGCGCGTTTCG       TTTATGGGGCCGCAA 100 51
LTC53_RS05265 NONE
LTC53_RS05270 1192161 .. 1192199 + -13.1  -3.05384   CCCACAAGATGCCTC  GTCGCTCCC-CGCCGGCG GTGG CGCCCCTGTGGGAGCGAC   TTCAGTCGCGACGAG  70 146
        mrcB NONE
LTC53_RS05285 NONE
LTC53_RS05290 1199852 .. 1199881 +  -4.7  -3.10775   GGCTTTTCGCCTTTC       CGGGTCCCGAGTC CCGA GTCCCGAGTCCCG        ATTTTCCATGAACAT  47 122
        tsaB 1200733 .. 1200750 +  -5.5  -3.30441   CTCACGCCCGGGTCG             GTTTCCG CATA CGGATAC              TTCTACAGCGTGGTC  51 168
        pilG NONE
LTC53_RS05320 NONE
LTC53_RS05325 1207388 .. 1207410 +  -6.9  -2.53876   ACCCGAATTCCGTCA          AGCCGC-CGC TTGA GCGCGCGGCC           TGCCTTCGCATCGAA  47 13
LTC53_RS05330 NONE
LTC53_RS05335 NONE
LTC53_RS05340 1218019 .. 1218050 +   -10  -4.42788   CGCAGGCCCTGTCCA      CGCGATGG-GGCGGC TGA GCCGTCGCCCGCGCG      TTTTCTCCGGTTCCA  88 9
LTC53_RS05345 1218712 .. 1218722 +  -3.2  -3.90762   GAGTTCAAAGGAGGC                 GGTG ATG CATC                 TGTTTTTGCGGGGTG  58 181
LTC53_RS05350 1223547 .. 1223593 +  -3.1  -4.40358   TAGTTTTTGGAAAAA TGGACCAGGGGAAATATCT TTTTGAACC GGATATTTCTCCTGCCTCA TTTTATGCCATGCAT  66 247
LTC53_RS05355 NONE
LTC53_RS05360 1225844 .. 1225864 +  -8.9  -2.66316   CGCCGATGGCGAAAT            CCACCGCAG TCG TTGCGGCGG            TCATCTGCTGACGGG  52 278
LTC53_RS05365 1227207 .. 1227235 +  -6.6  -3.53563   CCGCGGCCAGCGCTG       CCGCAGG-CGGTC GTTT GAGCGGCCCGCGG        TTTCCGAACCCGTGT  56 8
LTC53_RS05370 1227727 .. 1227762 + -21.2  -3.14344   AGGGCGTCCTGGAAA    TGCAAACGGCCCGGAG TCGC CTCCGGGCCGTTCGCG     TTCCTGCACAGCGTG 100 43
        aspS NONE
LTC53_RS05385 1231267 .. 1231278 +  -7.2   -3.5627   ATCGCTTGCGCTGCA                GCCG CCGT CGGC                 TTTGCAACGTGCTCT  58 127
LTC53_RS05395 NONE
LTC53_RS05400 NONE
        ruvC NONE
        ruvA NONE
LTC53_RS05415 1238822 .. 1238839 +  -4.8  -3.55444   CGTTTGCCGATGACC             CGC-CCG ATGGC CGGAGCG             TTTACCGAGTCCCGA  52 146
        ruvB 1239930 .. 1239940 +  -2.4   -4.1891   CGCGCAGTCGCCATG                 GCGC ACC GGGC                 TTTCTCTTCGACCAG  62 43
        ybgC NONE
        tolQ NONE
        tolR NONE
        tolA 1242765 .. 1242787 +  -4.9  -3.27476   AATCCGGGCTTCCTG          CCATCGG-CT TCAC AGATCGATGG           TTCATGATTGCGAAT  49 101
        tolB NONE
         pal NONE
        ybgF 1245588 .. 1245628 +  -2.4  -3.54424   CGGCCAGCAGCTGCG CTGAGCCCCCG-AACGCTG CCGC CATCGTCGCGGGGGCATAC  TTTCCCGCCATGGCC  48 22
        queE 1246369 .. 1246384 +  -5.4  -3.44552   CCGGAATCGGCAAAG              CG-CTGC ATT GCAGGCG              TCTTGTTGCTGGCCT  53 79
        queC NONE
LTC53_RS05470 1247375 .. 1247403 +    -6  -4.10657   TGCCTACTCGGTGCC       TGCATGCCGCGCGC CAT GTGC-CGGCA-GCG       TTTTCCGCGATGTGC  66 100
LTC53_RS05475 1249679 .. 1249709 + -15.4  -3.28712   GGTACGCGCTTGCTC       GGCCTCGGCCAC GGCCTGG GTGGCCGCGGCC       TTCTGCGCCGAGGCC  79 356
        hrpA 1257224 .. 1257280 +  -9.1  -4.11484   TCGGGACGCTTCGGG ACTCGGGACTCGGGACTCGGGACTCGG GAC TCGGGACTCGGGACTCGGGACTCGGGA TTTTCGCAAGTTCGC  75 51
LTC53_RS05540 1266709 .. 1266719 +  -8.2  -2.52464   GCCCGGGGTGGACGA                 GGCG CGG CGCC                 TGGGTTGAACGCAGG  51 7
LTC53_RS05545 1268759 .. 1268802 + -11.7  -3.14132   GCCAGTTCCAGCATG CCCGCTGCGGCCGGTTTGCCG CCGG TGGTTAG-CGGCCGC-GCGGG TTCCTGCAGCGCGAC  66 464
        purT 1276473 .. 1276497 +  -7.7  -4.15044   CCGCGGTGGGCGATG          CCGTGTGCGGC GTA GGCGCGTGCGG          TTTCTTCGCCGCCGG  73 273
LTC53_RS05605 1279241 .. 1279268 + -22.8  -5.50774   GCGCCGATCGACAGC        CGCCCCTGCGCA GCAA TGCGCAGGGGCG         TTTTTATTTGTTGTC 100 68
LTC53_RS05625 1282541 .. 1282570 +  -6.5  -4.66609   GCCGGAGCTAGAAAA       AAGCCGCTTTTTT TTTA AAAAAATCGGCTC        TTTTTGCATCAAATC  78 195
        rplU NONE
        rpmA 1287016 .. 1287031 + -11.8  -5.01811   GCTTGCTGACGAAAG              CCCCGC TTCG GCGGGG               TTTTTCGTTTGGTGG 100 75
        obgE 1288653 .. 1288670 +  -8.3  -4.77036   GCACGCACACGAAAA             ACCCGGC CGAA GCCGGGC              TTTTTCGTAGTGCCG  86 82
        murJ NONE
LTC53_RS05670 1291379 .. 1291408 +  -5.6  -3.53811   CTTGTCGGCATGCAG       CTTGTCCGGCCA GCGTCG TGGCCGTCCAGG        TTTGCCGGCAATGGA  54 385
LTC53_RS05690 NONE
        ileS 1297838 .. 1297879 + -11.5  -4.08767   GGTTCTGATCCGTCC CCGCG-CGGCAGCGGCGG CACGCAT TCGCCGTCGCCGTCGTGG TTTTCGCCGCGTCGC  82 33
        lspA NONE
        ispH 1299379 .. 1299389 +  -2.4  -2.52464   GCCCAAGGAACTGCG                 CCTG CGC CTGG                 TCAATTGACCGGCGG  37 7
LTC53_RS05710 1299541 .. 1299566 + -12.5  -4.72272   TGCATTAGAATCAAG         GGGTTGGCCGG GTTT CCGTCCAGCCC          TTTTTCATGCCCGCC 100 58
        cyoA NONE
        cyoB NONE
        cyoC NONE
        cyoD 1305090 .. 1305107 + -10.5  -4.27316   CGCCGCAACGCAAAA             GGTCGCC TTCG GGCGGCC              TTTTGCGTTGCGGCG  85 52
LTC53_RS05740 1307312 .. 1307329 + -12.7  -3.55761   GCGCGATCGTAGGTG             GGCCGCT AGCC AGCGGCC              TTTCGACCCTCGATC  74 195
LTC53_RS05745 1308772 .. 1308784 +  -3.3  -4.09739   CGCGCGGCTACAGTA                GCGCT CCC ACCGC                TTTTCCGGAAGTTCC  59 86
        radA 1310214 .. 1310226 +  -9.1  -3.86346   TAGCTGCAAGCGTTT                CCCTG CGG CAGGG                TTTATGCCACCATGC  71 38
LTC53_RS05755 1310872 .. 1310895 + -19.6  -3.64915   TCCGCGTAGCTGAAA          CGGCGCTCGC TTTT GCGAGCGCCG           TTCTCGTTTGTGCGC 100 228
LTC53_RS05770 1312460 .. 1312489 +  -5.7  -3.61178   CGCCACGACACGCCA       GGCGCATGATGCGA CGA TTG-GTCTTGCGCC       TTTCCCCTCAGTGGG  54 115
LTC53_RS20030 1317122 .. 1317150 +  -5.2  -3.57144   GGTGCGCCCGGGCGG       CGATC-GCGGCGC CCGT GTGCCGTAGAGCG        TTTCAGGGTGGGGGG  54 1
LTC53_RS05845 NONE
LTC53_RS05850 NONE
        sctJ NONE
LTC53_RS05860 NONE
        sctL NONE
        sctN NONE
LTC53_RS05875 NONE
        sctT 1331993 .. 1332003 +  -3.2  -4.08144   CATCGCCAAATGTAC                 GAGT TGC GCTC                 TTTATCGTTAGTCGC  59 187
LTC53_RS05885 1333659 .. 1333684 +  -8.1  -3.36515   TGAAACAGAATCGTT         CGCGATCGGCG GCAA TGCCGCGCGCG          TGTTTGGCAGTGGCG  59 53
        sctC 1335492 .. 1335538 + -15.1  -2.58714   CGCCCTGAGTTTGCC GCGCGGT-AGCGCCTCGCTCGC AGTC GCGAGCGAGGCGCAGATGGCAC TCAGTTGATCTGGGG  71 33
LTC53_RS05900 NONE
LTC53_RS05905 1338651 .. 1338673 +   -12  -3.14211   CGCCCAGGTGCGCCT           GCTGCACGTG TTC CACGTACAGC           TTGCTCCAGCCGCGT  68 268
LTC53_RS05915 1341435 .. 1341448 +  -2.3  -3.38317   GTCAGCCCCGACGGT               GTCCG AAGA CGGAA                TGTTGATTTCTGCGT  46 187
        gguC NONE
LTC53_RS05930 NONE
LTC53_RS05935 NONE
LTC53_RS05940 NONE
LTC53_RS05945 NONE
        yjfF NONE
LTC53_RS05955 1351923 .. 1351960 + -19.9  -3.24747   CAGTTCTGAGCCGCT   GGCGCAGGGCGTCGGCGA TGA TCGCTG-CGGCCTGCGCC   TTGCTGCTGTGCGCG 100 32
LTC53_RS05960 NONE
LTC53_RS05965 1354596 .. 1354613 +  -3.3  -3.40597   TATGGTGTGGCCTGC             GGC-CAGC GTT GCCGCGCC             TGTTTCGCTGCAGCG  48 42
LTC53_RS05970 1355752 .. 1355762 +  -6.8   -3.7941   GCGCGCCGATCGCCA                 TCGC ATC GCGA                 TTGTTCTCGCCGCTG  61 380
LTC53_RS05980 1357602 .. 1357625 + -12.4  -3.53012   CGGCGCATAAAAAAA          CCACGCCGAC CTGC GTCGACGTGG           TTTGGACGACCAGCC  74 44
LTC53_RS05990 1361113 .. 1361126 +  -6.7  -3.14132   GGTGGCCCAGCACCA               GTTCG ATGA CGAAC                TTGCTGCCGAAGAAC  52 191
         ffh NONE
LTC53_RS06005 1364844 .. 1364870 +  -5.8  -3.31726   AGTTGGTGGGACCAG        GCGCAGGCGCT GCTGTG AGCGCCAG-GC         TGTTCTGTCACGGGA  51 8
LTC53_RS06010 1365658 .. 1365699 +  -3.6  -2.78715   CTGGCAAGCCATCTG ACGGGTCGGGGGGAGCGACT TGGC AG-CGTTACACCCG-CCCGC TATAATCGCCGGCTT  41 25
        rpsP 1366025 .. 1366055 + -12.4  -4.61231   CCACCGCGGCCTGAT       CCTGCGGGCCGCGC CTG GCGCGGTCCTTCGG       TTTTTGCACCTATGA 100 27
        rimM 1366560 .. 1366572 +  -3.3  -2.58544   ATCTGATCGTGGTCG                ACTGG GAT CCAGA                ATTCTGAGGGTGCCG  39 6
        trmD 1367445 .. 1367462 +  -2.6  -2.76162   GCCATGGCCGCACGA             CTGGGT TAAAAT GCCCGG              CTTTCCGGTCAAGTC  38 40
        rplS 1368018 .. 1368048 + -16.9  -3.86015   GACTCCGGTCGCTGC      CGC-GACGGCCGCC TTCG GGCGGCCGTTTGCG       TTTGTGGGCGGGGTG  95 50
LTC53_RS06040 NONE
LTC53_RS06045 NONE
LTC53_RS06055 1374612 .. 1374625 +  -3.7  -3.01712   TGTCAGCATGGCAGG               GCCAG ACTG CAGGC                TGTTCACCACGGAAA  44 48
LTC53_RS06060 1375599 .. 1375657 +  -8.6  -3.68222   GCGAACAGGCCGAAC TGCTGCGGCGCGTCCAGCGCCT-GCGG CGCCAT CTGCGAGGCGTGGCTCTCGCCGCCGCG TTGTTCCAGTTCCGC  67 320
LTC53_RS06070 1380462 .. 1380508 + -19.5  -2.53263   TCAGCCGCGTGCGGC GCTCTCGCCGCCGCTGTCG-AGC AGG GCTGCGGCGGCGGCGCCGAG-GC TGCGTTCGCGATGGC  93 288
LTC53_RS06080 1382480 .. 1382490 +  -6.8  -3.22475   GGCGCGGGCGCTGTA                 CGCA TGC TGCG                 TGTTGTCGGCCTCCC  54 52
LTC53_RS06085 1383909 .. 1383927 +  -6.6  -3.09015   CTGTCCTGCATCTGC             CGCAGCGC CTG GCCTTGCG             TTGGATGCGTCTGCG  51 170
        rpoE NONE
LTC53_RS06105 1390255 .. 1390277 +    -9  -4.33004   GTGCTTCGTTCCGGC           GCGCGGTGCG CGC CGCACCGCCA           TTGTTTTCCTTCCCT  83 63
LTC53_RS06110 1391900 .. 1391941 + -23.9   -3.9444   TCGCTCGACGCACTG CCAATGGCGCCCAGCGAAC CCAG GTTCGCTGGGTGCCATTGA  TTTCATTGGGGTTTG 100 45
        lepA 1393914 .. 1393935 +  -8.7  -3.66356   ACAGGGAATGGGCAT           GGGAAGAGC GGGC GCTCTTGCC            TTTCCGATTCCCCAT  65 54
        lepB 1394773 .. 1394783 +  -6.8  -2.62616   CCTCACGGATCGGGA                 CTGG TAT CCAG                 TGATGTCCGGCGTAA  47 12
LTC53_RS06125 NONE
         rnc NONE
         era 1396943 .. 1396957 +  -4.2  -3.53224   GGACTCGGGACGGGT               CTCATG GAG CTTGAG               TTTGGCCCCAGGCTG  51 212
        recO 1398146 .. 1398166 +    -9  -3.18582   GGCCTGCAGCCGGTG            CAGGTGGT TGCGT ACCGCCTG            TTCGTCGCTGAGCTG  56 318
        rlmD NONE
LTC53_RS06155 1400989 .. 1401001 +  -6.9  -3.00704   ACATGGCAGCGACCA                CGGCG ATC TGCCG                TATGCTTTCCCGAGT  51 64
LTC53_RS06160 NONE
        nagZ NONE
LTC53_RS06170 1403432 .. 1403442 +  -8.2  -4.27316   GCGATGAAGGAATAA                 GGCG CGG CGCC                 TTTTCCCTTCGCGCG  76 26
LTC53_RS06175 1404238 .. 1404270 +  -3.4  -2.80796   GAGCTGATCGGCGAA     CTGGCGC-GCGGGTGA TTG TC-TTCGCTGCGCAAG     CTTTGCATACTCCGC  41 11
LTC53_RS06180 1404578 .. 1404593 + -11.8  -5.28176   TGAGCTGTTTTTGAA              CCCCGC TTCG GCGGGG               TTTTTTATGGATGGC 100 55
LTC53_RS06185 1405981 .. 1406001 +  -8.9  -3.58726   ATCGGCCGGTCTGTT            GCGATGCCG CGG CGCCGTCGC            TTCTCTGTGGGAGGG  62 83
LTC53_RS06250 1423127 .. 1423146 + -10.6  -4.15044   GTTCTGATGCGGTGC            GCGCGTGC TGCG GCCCGCGC             TTTGTTGACAGCGGA  81 34
LTC53_RS06275 1431558 .. 1431570 +  -3.3  -3.09327   GCGCCGGCGGTGGTG                CGGTT GCT GGCCG                TGTTGCATCCAATGG  44 58
LTC53_RS06280 NONE
LTC53_RS06285 1433645 .. 1433662 +  -8.3  -3.64184   TGCGTGGTCCGGATC             CAGGCGC AGCA GCGCCAG              TTTGGGATCGTCTTT  63 258
LTC53_RS06295 1435681 .. 1435709 +  -9.6  -2.57564   ATGCGCTGTCGCGCA       TCGACAGGCCGGC ATGG GTCGGCCT-TCGG        CTTGTAAAACCGTAC  54 375
LTC53_RS06315 1442981 .. 1443027 +    -5  -2.77192   CTGGTCGAGTCCGAG GCGATCGGCACGGTCGGTGT GGGCGAA GCGACGATTCCGCCGATCGC ATTGTTCAACGCCTT  43 300
LTC53_RS06325 NONE
LTC53_RS06330 NONE
LTC53_RS06335 1449897 .. 1449928 +  -4.2  -2.87132   GCGGCCGGCGGCACG      CGTGTCCGCGCGCT GTCA AGGACGTGGTCGCG       TATCTCCCCCAGGCA  43 137
LTC53_RS06340 1450791 .. 1450805 +    -7  -2.71011   ACGCCGCAGCGCAGG               CGCTGC CAG GCCGCG               TGGTTGCGCGCAGAT  48 40
LTC53_RS06350 1454762 .. 1454796 +  -7.7  -3.76125   GTCCGGCGCGAAGCG     TCGCGCGCAGGTGGG GTGCG CGCGGCTGCGCCCGA     TTTGGATTAGGGTGA  66 140
LTC53_RS06355 1455888 .. 1455935 + -14.8  -2.52543   AGGTCGCGCGTCCGC TCGGCAGCGGCACGCTTTCCAC TTCG GTGTAGAGCGTGTCGGCGCCGG TCGGTTGGCCGACCT  69 271
LTC53_RS06380 1458900 .. 1458918 +  -3.8  -3.17075   CGGACGACCTGATCT             GGTAGC CGGCGGC GCTGCC             TTCCGTTGCGCAGCG  45 21
LTC53_RS06385 1459583 .. 1459604 +  -5.8  -3.61517   GCAGCAGCTGCGCCT           GCGCCG GCGTCCAGAA CGGCGC            TTCTTCCAGCCGCAT  57 213
LTC53_RS06430 1465857 .. 1465894 + -16.3  -2.71144   CCAGGCGTTCGACCG   CGCGCTCGAACAGCGGCT GCG GGTCGCTG-TCGTGCGCG   TCGTTGGCCGGGGTC  74 407
LTC53_RS06445 1468152 .. 1468168 +  -9.3  -3.28712   GGATGCGCCTGGCGC              CGCGCTG CGC CTGCGCG              TTGTGCGACAGCCGC  61 59
LTC53_RS06450 1469010 .. 1469036 + -22.4  -4.27316   CCGCACGAGCGCAGA         GGCCGACCGGAT TGC ATCCGGTCGGCC         TTTTGCATTGCGCCG 100 119
LTC53_RS06455 NONE
LTC53_RS06460 NONE
LTC53_RS06465 1470747 .. 1470767 +  -4.5   -2.5409   GCATGAACCGGCGTG            CGCGGCGTG CTT CGCGCCACC            TCCGTTCGGGATTAT  42 128
LTC53_RS06470 1472647 .. 1472671 + -10.7  -3.05384   AAATCCATGGTGCCC          TTCGGCGCATC GGC GATGTGCCGCA          TTAGGTCCACCGACA  62 434
LTC53_RS06485 1476236 .. 1476261 +  -9.1  -5.42259   TTTGATGCAAAAAGG         GCCGATTTTTT TAAA AAAAAAGCGGC          TTTTTTTGCAGCTCC 100 150
LTC53_RS06560 1490004 .. 1490019 + -11.8  -5.22039   CTCGGGATCAAAAAA              GGCGCC TTGC GGCGCC               TTTTTTGACTTTGGA 100 2
        mmuP NONE
        mmuM 1494271 .. 1494314 +  -5.8  -3.61398   GGTAACGCCCGGTCG GGGCTGAAGCCCCTCCTGCAG GTG CTGC-GCCGCTGCGTCAGCCC TTCTTGCCCGCCACC  54 156
LTC53_RS06615 1500628 .. 1500641 +  -3.7  -3.70902   CTGCTTTGTTGCCGC               CTGGC CCTT GCCCG                TTTCCATGTCCGCCG  54 265
        leuS NONE
LTC53_RS06625 1504019 .. 1504039 +  -2.3  -3.18582   GGACCCCGGCACGCC            GCCGGCGAC CAT GCCGCAGCC            TTGATCCGTCGGCTG  42 1
        holA NONE
        nadD 1505998 .. 1506015 +  -5.5  -3.16534   GCGCCGGCTAGCTGA             ATACGCG TCTT CGCGTAG              TTCCCTATAATTCGT  49 26
        rsfS NONE
LTC53_RS06645 NONE
        rlmH 1508257 .. 1508276 + -16.4  -4.96848   ATCGGCAAACAAAAA            GCCCGGGC TCAG GCCCGGGC             TTTTTGTGTAGCGCA 100 158
LTC53_RS06670 1513558 .. 1513574 +  -5.7  -3.83026   GACTTCCCAACTGCT              GCGCGCC TTC GGAGTGC              TTTGATGTCGCAAGA  60 4
         rng 1515137 .. 1515163 +  -2.3  -4.11216   CTGTCGGGTTTCGGT        GCG-CGAGTGC CGTCCTT GCAC-CGTCGC        TTTTCCGAGTCCCGC  58 93
LTC53_RS06680 NONE
        tldD 1520758 .. 1520772 +    -7  -3.15663   GCGCGCGTCCGGCGC               CGCGCC TCA GTCGCG               TTCGTCGGGATCGGT  52 185
        pmbA 1522836 .. 1522891 + -13.9  -3.06796   GCGACATGGACGGCC GCGACGGCGGCGACGGTGCCGGCG CGCGGATTC TGCCGGTGCCGGCGTCGCAG-CGC TTGCGTGCAATGGCG  72 65
LTC53_RS06700 1523470 .. 1523489 + -16.4  -5.81412   CGCGTAGCGACGAGA            GGCCCGGC GTTC GCCGGGCC             TTTTTTTTGCCTGCG 100 53
        tssB NONE
        tssC 1525897 .. 1525916 +  -2.8  -3.19522   AGGGCGCCTGAACCG            CGGCA-ACG CCG CATCTGCCG            TTCGATGTTCCGTCA  44 30
LTC53_RS06715 1526506 .. 1526519 +  -3.7  -3.04894   AGAAGTCCTGATCCA               GACGC GCTT GCGCC                GTTTTCCAAGGAGTT  44 30
LTC53_RS06720 NONE
        tssE 1527854 .. 1527887 +  -2.4  -3.18264   CGGGCGCTTCACCGT    GCACGACG-GGGTGCA CTGA TGGACCCGCGCC-TGC     TTCATCACTACAGCC  42 7
        tssF NONE
        tssG NONE
        tssH 1533658 .. 1533676 +   -11  -2.62184   TCGCGGCCAGCGAAT             CCACATGG GCT CCGTGTGG             TGGTATGCGAAGGAC  59 113
LTC53_RS06745 1534969 .. 1534992 +  -2.3  -3.63744   CGCGACCGTTGAACC          TCTCCGGCA CGGGCA TGCCGGACC           TATTTTCCGGCGGCA  51 184
        vgrG NONE
LTC53_RS06755 NONE
        tagH NONE
        tssK NONE
        tssL NONE
        tssM NONE
        tagF NONE
LTC53_RS06785 NONE
LTC53_RS06790 NONE
LTC53_RS06795 1549640 .. 1549690 +   -14  -2.50816   TCGCCCCGTTGCCCG CC-CTGGCGACGCCGACGGC-ACG CTTGC CGTCGCTGGCGGCGTCGGCGGAGG ATTGCTCCATGGACG  65 257
LTC53_RS06850 NONE
LTC53_RS06855 1564117 .. 1564137 +  -7.5  -3.76952   GGCCTGCTGCATCGG            GACGTGGCA GAC TTCCGCGTC            TTTCCCTTCCCTGGA  66 157
LTC53_RS06860 1564970 .. 1565002 + -15.5  -2.55074   CCAGCCGTGGATACA      GCGTGGCGCCGATCG CGA CGATCTGCGCGGCGC      TGCGTTCGCATTGCA  69 357
LTC53_RS06870 1566263 .. 1566273 +  -2.4  -3.64703   CGGTGTTGCCGGCAT                 GCGC CGT GAGC                 TTTACATCGCCACGC  51 17
LTC53_RS06885 1568484 .. 1568504 + -12.6  -3.35046   CGGCGCAAGGGTGCC            GCGGCGAT GGATA ATCGCCGC            TCTTTCGCCCGGTGC  71 164
LTC53_RS06890 NONE
LTC53_RS06895 NONE
        gorA 1572484 .. 1572515 +  -7.3  -4.10566   TGCGTGGCCGCTGGT      TCGACGCCCGCC TCGTGCGCT GGCGG-CGTCGG      TTCTTCTTCTTCGAT  73 125
LTC53_RS06915 NONE
LTC53_RS06920 1579205 .. 1579222 +  -5.5  -2.82516   CGCGGCGTTATGGGG             GCCGC AATAACGA GCGGC              TATGATGGTCGGCAG  46 16
LTC53_RS06925 1580315 .. 1580326 +  -4.4  -4.11692   AAGCCGGCAACGGGT                TGGT CGAT ACCA                 TTTTGCACCTGGCTG  62 429
LTC53_RS06940 1581705 .. 1581750 + -17.1   -4.8083   GTTAAATAGTCGAGA TCGGCGAATTCAATTCAAGAG AGAG TTCCTGAGTTGGATTCGCCGA TTTTTAATCATGTTA 100 32
LTC53_RS06970 1591390 .. 1591400 +  -8.2  -3.28712   CTACAGTTGTCGCAC                 GCCG GCG CGGC                 TTATAAAAAAACCCC  58 64
LTC53_RS06980 1596784 .. 1596798 + -12.8  -2.71144   GCCTTGGCGCGGCTT               GCCGGC GAA GCCGGC               TACTTGCCGAAGCTG  65 115
        apbC 1607454 .. 1607477 +    -3  -3.70902   CGGCCCGCTCCGGCG          TCGGCCGCGCT CCC GGCG-GGCAGG          TTTCGATCTGCCGCC  53 96
         dcd 1608073 .. 1608085 +  -3.3  -4.74103   ACCGGCGTGACCCTG                CCCAG GAC CTGAG                TTTTTCCATTGCACA  75 14
LTC53_RS07010 1608873 .. 1608899 +  -2.9  -3.61398   GTAGCGATCAGCCGG        CCCAGGCTGAGA TTGG TC-CAGCCCAGG         TTGTTGGCCAGGAAC  50 268
LTC53_RS07035 1612706 .. 1612716 +  -2.4  -4.25104   GCAGCGCCAATGCGC                 GCCG TTC CTGC                 TTTTCCTGCAGCAGG  65 400
LTC53_RS07045 1614929 .. 1614944 +  -8.2  -2.78816   ATTTCCGCCGCCGAG              TCGCGG TTGA CCGCGG               TGTCGTAGCGGGTAC  52 450
LTC53_RS07055 1617993 .. 1618009 + -11.5  -3.35679   GATGAGCGGCATCGA              CGCGGGC GTG GTCCGCG              TTCTGCCTGCGGGCA  70 58
        prmB NONE
        aroC 1621746 .. 1621788 +  -4.1  -3.03771   ACATCCCCGGCGGTG GC-GATGGCTGAGTCGCGGCC ACG GGT-GTGGGTCAGCCAACCGC TGTTCGACGATGTCG  44 15
LTC53_RS07080 NONE
LTC53_RS07085 1623980 .. 1624014 + -15.9   -4.4261   GACGACAGGCCGTGT    GC-AACGGCAAGAGCG AGCA TGCTCTTGCCGTTGGC     TTTTGCTGTTCCGGG 100 93
LTC53_RS07090 NONE
        truA NONE
LTC53_RS07100 1627868 .. 1627881 +  -2.3  -3.87869   GCCGACCAGCAGGGC               ATGCG TTGG CGCAA                TTTCTCAGCACTTCA  54 70
LTC53_RS07105 1628631 .. 1628646 + -11.8  -3.54741   GGATCGTGGCACGCC              CGCCGC GGAT GCGGCG               TTTGCCGCAGTGCTG  71 303
        trpB 1631865 .. 1631903 +  -4.5  -2.62184   GGGATGGTGCTGTGA  GCGGGCGCGGCAT-GCGCA GGC TGTGCGGTGGCG-GCGCGC  TGCTGTGCGCCGCGG  42 26
LTC53_RS07125 NONE
        trpA 1633309 .. 1633355 + -12.3  -3.14931   GCTTCGCCTGGGCCT GCGCATCCGCCGCTGTGCCACTG GCA CAG-GGCA-AGCATCGGCTGCGC TTGCTGCGCGATGCG  69 152
        accD 1634424 .. 1634453 +  -5.5  -2.75064   TGGCGTGATGTTGGC       CGGGACTCGGGAC TCGG GACTCGGGACTCG        TGGTTCGGTGCAACG  45 33
        glmM 1635973 .. 1635995 +  -4.9  -4.39696   TTCTACCTGCTGTAC          CGCCTGCTGAT CTG ATC-GC-GGCG          TTTCTTCCTTTCACG  69 87
LTC53_RS07145 1637460 .. 1637476 +  -6.5   -4.2828   CAAATTGGTATTTCA              GCAGCCT GTT AGGCTCC              TTTTCCTGCGTGCCG  72 506
        tpiA 1640169 .. 1640221 + -11.8  -2.76442   CTTCCTGGCCATCGC GCGAGCGGCGGCC-TCCCGTTAACC GAAC GGTCGCCGCGCTGGCGGCCGCTCGC TACTTCAGTCGTACT  62 4
        secG NONE
LTC53_RS07170 NONE
LTC53_RS07175 NONE
LTC53_RS07180 NONE
LTC53_RS07185 NONE
LTC53_RS07190 NONE
        nuoE NONE
        nuoF 1646062 .. 1646077 +  -6.8  -3.86015   TCCCGTCATCAACAC              GGGACG TGTG CGTTCC               TTTGTCGCACGAGTC  64 123
        nuoG NONE
        nuoH NONE
        nuoI 1649939 .. 1649950 +  -2.2  -3.33969   CGCCGCCGACGCCGC                CTTC CGCT GAGG                 TTCTGAAATGGATTG  44 16
LTC53_RS07220 1650586 .. 1650643 +  -3.4   -2.5474   ACACCCAGGCGCCGG CACCGC-AGGAGGGCCAGCCATGATCACC CTA GGCCA-CATG-CTGGCGCTCGGCGCGGTG CTGTTCTGCATCAGC  39 3
        nuoK NONE
        nuoL NONE
LTC53_RS07235 NONE
        nuoN 1656132 .. 1656162 + -17.6  -3.92869   TTTTCACGCTGTTTG       CAACGACGCCGCCA ACG TGGCGGCGTTGTCG       TTTGTGCATCGATGG 100 59
LTC53_RS07245 1656509 .. 1656523 + -12.8  -3.32769   GTCGTACCGGACAAG               GGGCCC AAA GGGCCC               TTCGTCGTTTCCGGG  71 149
        rimP NONE
        nusA NONE
        infB 1661549 .. 1661568 +  -4.2  -4.11216   CCGGGACTCGGAAAA            GCAAGAGC TGTC GCTTTCGC             TTTTCCGAGTCCCGA  61 60
        rbfA 1662204 .. 1662215 +  -7.2  -4.08216   GCCTCACCGTCCGAC                GCCG GATT CGGC                 TTTTCCGCCGAGTCC  67 205
        truB 1663205 .. 1663221 + -15.1  -2.62263   CCGCGGCCTGCCGCG              CGGCCCG GCG CGGGCCG              TCATGTCGCCGGCCT  71 42
        rpsO 1663680 .. 1663703 + -19.6  -5.10933   AGGCAACGAACCCTA          CCGCGGCGCA GTGA TGCGCCGCGG           TTTTGTTTTGGGTAG 100 40
         pnp 1665954 .. 1666004 + -24.3  -3.53811   GCCGTCGGCGTCCAG CGTCCCAGCAAGAAAAAAGCGGGC TTCG GCCCGCTTTTTTCTTGC-GCGGCG TTTGCGCGCGATGCG 100 41
LTC53_RS07305 1674367 .. 1674408 +  -9.5  -3.06501   GTGCGGCTGGGTCAT GC-CT-GATGCGCCGCGCGG CGACA CCGCGCGGCGC-TCGAACGC TTCCCTGCCCCTATA  57 20
LTC53_RS07320 1676669 .. 1676706 +  -7.1  -2.66435   CCGCCTGAGTAATCC  GCGCTGT-CGCCGTGAT ACGCGC ATCACGGCGGACCG-GC   TAGTGTCGTGGCGGT  47 33
LTC53_RS07325 1677081 .. 1677102 + -11.5  -4.52589   TGCAGCAACAAAAAA           GCCCCGGAG TCGC CTCCGAGGC            TTTTGTCTGAACAAG 100 191
LTC53_RS07335 1677907 .. 1677923 + -13.7  -5.24531   TGATCGGTCGAAAAA              GGCCAGG CTT CCTGGCC              TTTTTTATCCGCGAT 100 38
LTC53_RS07345 1681243 .. 1681261 +    -6  -3.53012   AGCGCCCGGGTCGGG             TTCCGC CTGGTGC GCGGAA             TTTGACGCGGCCGCG  56 2
LTC53_RS07350 1682245 .. 1682292 +  -6.9  -2.79574   CTGCGAAACGGCGAA GACGGC-GCAGCGGTAAG-CGCG CCAT CGCCACTTGCCGCGGCAGCTGCC TGGTTGCTGAATGTG  48 10
LTC53_RS07355 1682884 .. 1682910 +  -4.3  -3.53761   GTAAAAGAGGAGGGT        GTC-GCAGCGGC TGCG GTCGCGGCGGGC         TTTGCGGACGGGTTC  52 69
LTC53_RS07380 NONE
LTC53_RS07385 1688920 .. 1688935 + -11.8  -2.78384   GATCCGGTGCCGTTC              GCGCCC ATGC GGGCGC               TGTCGTGAGCGCGCC  62 2
LTC53_RS07390 NONE
LTC53_RS07395 NONE
LTC53_RS07400 NONE
LTC53_RS07405 NONE
LTC53_RS07410 1694229 .. 1694272 + -17.5  -3.19192   TCGACCGGCCGTTCG CCTGATGCGCGCGGCGCTCGC CATG GC-AGCGCCGC-CGCACCGGG TTCACTTGCCTAGCG  84 21
LTC53_RS07415 NONE
LTC53_RS07420 1697955 .. 1697990 +  -3.3  -3.34005   CGACGGCGCCATGAC   GAACGCG-TCGCCACGC GCCT GGATGGCGAACG-GTTC    TTGTCGCGGTTCGTT  46 27
LTC53_RS07425 1699631 .. 1699648 +  -2.6  -3.50877   GCTGGAAGAGGACGA             CGGGGA GTAGGG TGCCCG              CTTTTTGTAGGATCG  48 16
LTC53_RS07430 1702356 .. 1702367 +  -5.8  -3.01712   TGCACAACTCCAGCG                CCTG GCCG CAGG                 TGTTGCCGCAGGCGC  47 296
LTC53_RS07440 1704120 .. 1704136 +    -3  -2.83822   CTAAACGTCCTGGCC             TGAG-GG CACG CCGCTCA              TCCTTCTCCCATCGG  41 23
LTC53_RS07445 1706958 .. 1706974 +  -2.9  -3.53444   CCACCACGCCCTGCG              CGCGACA CCC TGTTCCG              TTTCGCCACCGATCG  49 229
LTC53_RS07450 1709884 .. 1709902 +    -6  -2.57132   TACTTCTGGGCGCGG             CTCAGGAC CGA GTTTTGAG             GTTGTCGGCAGGCAG  46 8
LTC53_RS07455 NONE
LTC53_RS07460 NONE
LTC53_RS07465 1718312 .. 1718330 +  -4.4  -4.56597   CTCTGCAGAGGTGGT             GCGTCGCG ACG CGCAACGG             TTTTTCCGGCGCGCG  72 172
LTC53_RS07470 1721600 .. 1721610 +  -2.4  -3.14344   ATGACACAGTGGCGA                 CAGG CCG CCCG                 TTCGTGGCCGCGGTC  42 108
LTC53_RS07475 1724345 .. 1724369 +  -4.8  -3.64487   GGTCGGCCGCCCGAT          CGCGCGGCCG CGCCA CGACCATGCG          TTATTCCGCATGTAG  55 225
LTC53_RS07480 1727712 .. 1727763 + -10.7  -3.14463   CGCCTTGCTGTAACG GTGCGCGATGC-CGGCGGCAGC-CG CGTA CGTGCCGCTGCCGTGCTGCGCGTGC TTACTCCAGCAACTT  64 114
        rsmD NONE
        coaD 1732193 .. 1732211 +  -4.4  -2.70932   CCCGCCAGGCCGCGG             CGCAGCGC TGA GCCCTCCG             TCATTCACAAGACAA  43 15
LTC53_RS07505 NONE
LTC53_RS07510 1733306 .. 1733331 +  -5.3  -2.93348   CCCACAGGAGCCCCC         CGCCGCATGAG AACT CTCGTCCGCCG          TGTCCTGTTGCTCGC  46 16
         ggt NONE
LTC53_RS07520 1736053 .. 1736090 +  -2.6  -3.77219   CTTGCAGCCGTCATC   GCGGCCAGCCAGTATCG GCCCA TGAACCTGCCTG-CCGC   TTTGCGTTGCCTGCT  54 58
LTC53_RS07525 1738224 .. 1738264 +  -5.9  -3.36878   ATGCCCAGCCCCGCG  CGCAGGATCGGCACCAGGG TGA TCTTGGCGCCGGCGATGCG  TTGTACCTGGGTGGG  52 445
LTC53_RS07550 1741261 .. 1741278 +  -5.5  -2.75844   CGTACTGTGATGCGC             CGGCCTT GAAG AAGTCCG              ATTTCCGCTACGAGC  45 162
        queA NONE
         tgt 1743737 .. 1743777 +  -6.8  -2.64155   AGATCGTGGCATAAT CGG-CGGCT-GCTTGCCGCC TCC GGCGACAAACCAGCAGTCCG TGCCTTTCCCGGCGA  47 229
        yajC NONE
        secD 1746113 .. 1746135 +  -4.1  -3.57561   CGAGTCCCTCGCCAA          AGCCTGCACA TCCC TGTGC-GGCG           TTTAAAAAATTGAAG  51 72
        secF 1747263 .. 1747280 + -14.1  -5.63517   ATCAGTGCAAAAAAA             GCCGCGC ATCT GCGCGGC              TTTTTTGTTTCGAAC 100 161
LTC53_RS07585 1749133 .. 1749153 +  -7.5  -3.23899   TTTGGTAGCTGGTCG            CTTGCTGTG GTG CACGGCACG            TTCGCTTCCTTGCCG  56 87
LTC53_RS07590 NONE
LTC53_RS07595 1752398 .. 1752414 +  -6.5  -5.10461   CCCGAATGAAAAATG              GCCGC GCGGATG GCGGC              TTTTTATTCGGTGAA  86 93
         efp 1754332 .. 1754363 +  -4.4  -3.55622   ACGCCGATGCAATGC      CGAATCG-CCGTG CGGCGAT CGCGGCCGATCCG      TTTCCAGGAATTCCC  52 145
LTC53_RS07610 1755018 .. 1755031 +  -3.8  -2.80977   CGCATCGACCAGGCC               CAGG CGGCAA CCTG                ATCTTTCCTTTTCCA  43 11
LTC53_RS07615 NONE
        ubiG NONE
LTC53_RS07625 NONE
LTC53_RS07630 1758638 .. 1758661 +   -11  -3.38951   CCCAGTCACGCAACT          CAGTCGGCGCT GCC GGCGCCG-CTG          TTGGTGTATTCGTAG  68 55
        dksA 1766956 .. 1766987 +   -18  -3.89614   CCCGCGTCTGCGTTC      GCCCAAGGCCCTGC TCGC GCGGGGCCTTGTGC       TTTCTGGCCGTTCGC 100 51
LTC53_RS07720 1779154 .. 1779168 +    -7   -3.5393   GCGCAGGTCCAGTTT               GCGCAG CTT CGGCGC               TTTCCAGGCGGTGGT  58 78
LTC53_RS07740 1783225 .. 1783241 + -13.7  -5.48054   GTTCGTTCTGAAAAA              CCCAGCC CGA GGCTGGG              TTTTTTCGTTTTCAT 100 205
LTC53_RS07745 1784385 .. 1784397 +  -6.9  -2.59094   CGCGGGACTCGTAAA                GTCCG AGC CGGGC                ATCTTCGTCTTTCTT  47 27
LTC53_RS07750 1785739 .. 1785761 +   -12  -2.90075   CGCGCCGTTGGCGCG           CCCCCCTTCA ACA TGAAGGGGGC           TCTGCTTCAGACGAG  63 76
LTC53_RS07755 1786908 .. 1786919 +  -7.2  -3.05816   GAGCACGCGCCGCCG                GGGC CACG GCCC                 TTCCATCCCGGATCA  51 39
LTC53_RS07760 NONE
LTC53_RS07765 NONE
        argC NONE
        argH 1791286 .. 1791316 +  -5.3  -3.67068   CGCTGGGACGCGCTG      GCCGGCTGAGGCAG CACG CTGCCAC-GCTGGG       TTTACGGGTTTTCAT  57 17
LTC53_RS07780 NONE
LTC53_RS07785 NONE
        proB 1793750 .. 1793775 +  -5.3  -4.76892   TGCATCGCGCACCTT         CGGCAAATGCG AGAA CGCGTCTGGCG          TTTTTCGCTTCGTCT  81 79
LTC53_RS07795 1795594 .. 1795623 +  -2.1  -3.55181   AGGCATTCGTCGCGT       AGCCGGCGGTTGAA GGA TTCAAC-GTAGGCG       TTCTGGTTCGGTTTG  48 505
LTC53_RS07805 1800189 .. 1800220 +  -2.9  -3.54424   GTTGCAGTCCCGCTA      CGTTCCG-TGCTGG CGGAA CCGGCAGTGGTGCG      TTTGCGCGCATCCGG  49 489
        xylB NONE
        xylA 1804948 .. 1804975 + -24.2  -2.64616   CGCTGATGCGCGCGA        CGGCCGGCGCCA CCCT TGGCGCCGGCCG         TGCTGTCCATCCCCC 100 35
LTC53_RS07825 1806466 .. 1806503 + -15.6  -3.34962   GGGCTAAGCGCTCGC   TGT-TGCCGGCGCGGCC CATGC GGTCGCGCCGGCGGACG   TTGTACCGTGTCCAG  80 34
LTC53_RS07830 1807973 .. 1807998 +  -3.1  -2.52464   GACGATTACTTCCAG         GCGTTTCCGGT GCAT GCCTGAGCCGC          TGCGTTCCCCGCCAC  39 5
       folE2 NONE
LTC53_RS07840 1809571 .. 1809604 + -17.5  -4.18018   CGGCGCCGGCCGCCA     ACGCAAAAGCCCCGC ACAG GCGGGGCTTTTGTGG      TTTTCACTGCAGGCG 100 49
        pcnB NONE
        folK NONE
        panB NONE
        panC 1813616 .. 1813626 +  -3.2  -3.53012   CGCGGCTGAAGCCGC                 TCCT ACA GGGA                 TTTGCGGCGAGCCGG  49 296
LTC53_RS07870 NONE
         pgi 1816072 .. 1816086 + -12.8  -2.70932   ACCGCCTGGCCGGCC               GCGCGC TGC GCGCGC               TCCTTGGCGGCGGCG  63 279
LTC53_RS07930 NONE
LTC53_RS07935 1830149 .. 1830169 + -12.5  -2.71712   GTGAGCGCGGCCTGA            GCGTGGCCG CAG CGGCCGTGC            GTTTGCGGCCGCGGC  65 37
        ispG NONE
LTC53_RS07960 1836512 .. 1836522 +  -2.4  -3.53224   CGTGCGGAATCAGCG                 GCTC AAT GCGC                 TTTCACGGCGCAATC  48 518
LTC53_RS07970 1837332 .. 1837356 +  -4.1  -3.72576   CGTCGTCCGGGCATG          CCAACGCAGTG CAT CAGAGCGATGG          TTTCGTGCCGGCAAC  54 83
LTC53_RS07975 1839329 .. 1839360 +  -5.7  -3.31144   GGTTGAAGGGTGGCC      GCTTGCGGGTCGC AGCCTG GCTGCACGCAGGC       TTCTCGCGCTAGCGG  51 65
LTC53_RS08010 1845602 .. 1845616 +  -8.5  -3.05715   ACACACAGTGGCAAT               CGCGC AGCCG GCGCG               TTCGCTGCCGACGTT  55 40
LTC53_RS08015 1846343 .. 1846376 +  -2.3  -2.74605   ACCGGCGGCAGCGCC     CGAT-GGCGCGCGATC CCG GGTGCCGCGCCGATAG     TAACTTTTGCAACCG  38 133
LTC53_RS20035 1846623 .. 1846679 + -14.5  -2.78935   ACTTTCGAAACCCAC GGCCCCGCACCCGGATCAGGTTG-CGGG GGAA CCCGTCGGCCTGATGCGAG--CGGGGCC TCTACTCCGAGGTCT  72 40
        thrA NONE
LTC53_RS08025 1850318 .. 1850335 + -10.5  -2.87683   GCGGCCAATCGGCCG             GCGCGGC AAGC GCTGCGC              TGTCTACGGGGATCT  59 173
LTC53_RS08030 1851826 .. 1851848 +  -4.1  -5.00616   CATCGCTGCGCGCGT           CGGTTGCAG GTCCG TTGCAGCTG           TTTTTTCAACCAAGG  81 98
LTC53_RS08035 1853612 .. 1853637 + -16.9  -3.25823   GGCCGATAAGTCGGG         CGGTCGCAAGC GTGG GCTTGCGGCCG          TTCGTCTGGCACAAC  86 32
        thrC 1855881 .. 1855902 + -12.3  -3.04144   GGTTCCCCCCACCGG           CACC-GCGGC GGC GCCGCAGGTG           TGTTGCGGCTGCAAG  67 486
        hisS 1858444 .. 1858462 +  -2.2  -3.29043   GTGGCGCAACCTGGA             CGGCCGCG CTG CGTGTCCC             TTGTGGGAGCGACTT  44 61
LTC53_RS08060 NONE
        hisG NONE
        hisD NONE
        hisC NONE
        hisB 1863588 .. 1863617 +  -2.8  -2.83715   GTGCTGTGATGCGCG       GCGCTTG-CGCAG GGAGG CTGCGATGAGCGA       TATCGTCCTGATCGA  41 32
        hisH 1864207 .. 1864221 +  -8.6  -2.88579   CTCGAGACCGATTTC               CGATGA GCT TCATCG               TCTATCCCGCGTTGG  54 20
        hisA NONE
        hisF NONE
       hisIE 1866367 .. 1866381 +  -8.5  -2.78816   AGTAGGTTCGCGCGA               CGGCG GTCGG CGCCG               TGTCGTGGCGGATGG  52 36
LTC53_RS08105 1868280 .. 1868290 +  -5.4  -3.21276   GTGCACCACGGTTGG                 CTTG CCG CAAG                 TGTTGTGGGCGCGAG  49 284
LTC53_RS08145 1877286 .. 1877305 +  -3.4   -3.1355   CGTGCATTGCGGGAT            TGGGTACC CTTG GGCGCCCG             TTACCTGTCCATGCC  44 112
LTC53_RS08150 1877667 .. 1877678 +  -2.2  -3.64703   GTTTCCTGCCTCTGT                TGCA TTCG TGCG                 TTTGCGTCACCGCGA  51 95
LTC53_RS08160 1880741 .. 1880795 +  -7.4  -3.57263   GCCGCGGCGATGCTC GCGCTCGCGGCGGCGGCCGGCTAGGC TAT GCCGAGGCGGCCACGGCCGTCCCCTC TTTCCCGATCCCGCT  60 69
LTC53_RS08165 NONE
LTC53_RS08170 1883399 .. 1883417 +  -6.6  -3.35813   GCCGCTACTTCGCGC             GCAGCCTG GCC CAGGTCGC             TTCGTTGCCGTCGCA  55 335
LTC53_RS08200 NONE
LTC53_RS08205 NONE
LTC53_RS08210 1890149 .. 1890160 +  -2.2  -3.17075   TCGACCAGTGATTGA                GTAG CGAA CTGC                 TTGCGTTGAAACGGC  42 490
        thrS NONE
        infC 1893552 .. 1893570 + -11.6  -3.05844   GCGCTGTTGCCGCGT             GGCCGCGC ATC GCGCAGCC             TGTTCGAGTCCCGAG  65 141
        rpmI NONE
        rplT 1894460 .. 1894483 + -14.6  -4.89729   CATCGCCAACATGCA          GGGGAAGGGC GCGA GTCCTTCCCC           TTTTTGCGTTTTGTG 100 97
        pheS 1895673 .. 1895703 +  -2.3  -2.51471   CGTCCTGGCATCCCA       GTCCCGGGTCCCG AGTCC CGAGTCCCGGAAA       ATTCATGAAATTCTC  37 108
        pheT NONE
LTC53_RS08250 NONE
LTC53_RS08255 1898795 .. 1898831 +  -4.2  -4.57837   TCCCGCTATAATCGC   CAGCTCGCCGCGAGGCG GGAC CGCCCAACGGCG-GATG    TTTTTACCGGGGTAT  73 79
LTC53_RS08260 1898924 .. 1898946 + -17.8   -5.0925   CCGACCATCTTCGAG           GGCCCATGTC AGT GACATGGGCC           TTTTTCGTTTTGCGG 100 34
LTC53_RS08265 NONE
LTC53_RS08270 1901684 .. 1901703 +  -3.5  -5.24129   GATCGCGGCGGATGC            GACGACG CAGGCA CATCGTC             TTTTTTCTACGCAAA  83 81
LTC53_RS08275 1903458 .. 1903509 + -11.5  -2.70525   GCCGGCGCTGCCCCG TCGTCGGCAGCGGCGGCGGCGTCGGC TGG GCCG-CG-TGCCGCAGC-GCCATCGA GTTCGTTTGCCGCCG  62 80
LTC53_RS08280 NONE
LTC53_RS08285 1906007 .. 1906034 +    -4  -3.06302   CTGATGGCGCCGTCG        CAATGCGGTGCG CTGG CGCACGGGAGTG         TTCAATGAAGGTGGT  44 37
LTC53_RS08290 NONE
LTC53_RS08295 NONE
LTC53_RS08300 NONE
LTC53_RS08305 NONE
LTC53_RS08310 NONE
LTC53_RS08315 1912579 .. 1912616 +  -2.7  -2.62184   GCTAGCCGGTGGCCG  CCGGCGCGTATCGATCG CCGGGA CGGCC-A-ACGCGTCGG   TGGTCTAGCCCAAGC  39 50
LTC53_RS08320 1913135 .. 1913164 +  -8.5   -3.1372   CAGGCTGAACATCAC       TGGCGCCGCGC GATCTGCG GCGTCGCGCCA        TGTTGCTGAGGAGTG  56 33
LTC53_RS08360 1920421 .. 1920454 +  -3.1  -5.15969   CTCGGCCACCATATT     TATCAAGGCTCTACA GCGA TGCAGAGCCTTTGTC      TTTTTTGGCTTGCAC  83 30
LTC53_RS08365 1921220 .. 1921259 + -10.6  -3.28924   CCTGTCGTAACGGCC  TGGCCGTCGCGTGCGACAT GGC GTGCCGC-CGCAGCGGCCG  TTGTCCGCAGGCCTG  66 201
LTC53_RS08370 1922335 .. 1922372 +  -2.8  -3.49618   GCGGCGACATGCGGA  TGCGGTG-ACCATGCGTG ATGG CGTGTA-GGTGTACCGCA   TTCATTCTGTACGCA  49 465
LTC53_RS08390 NONE
        tsaE NONE
LTC53_RS08400 NONE
        mutL NONE
LTC53_RS08410 NONE
LTC53_RS08415 1932927 .. 1932951 + -11.3  -2.62396   GTGGACAGCATCGGT          TCGCCGTCCTG TTC CTGGTCGGCGA          TGATCTGCAGCAATA  59 473
        htpX 1936290 .. 1936302 +  -4.1  -3.45023   CTGCGCGCGCTCGGT                GATCT CGC GGATC                TTGTCCTGGTGCTCG  49 279
LTC53_RS08455 1941475 .. 1941502 +  -5.5  -5.53288   ACGCCTGCAACTCAG        TCTCGGCC-CCG ATACC CGGTGGCTGCGA        TTTTTTTCAATTCAA 100 396
LTC53_RS08460 1941779 .. 1941802 + -12.4  -5.04601   TCAAGGTTGCCAAAA          CGCCGGGAGC GCAA GCTTTCGGCG           TTTTTCATTTGTGCG 100 59
LTC53_RS08465 1942891 .. 1942922 + -10.8  -3.15544   GGTTCGACCACGCGG      TCGTCGGCGCCG-TG CAG CAGCAGCGCCGGCGG      TTCGTCGCCATCGAC  64 275
LTC53_RS08475 1945683 .. 1945734 +  -9.5  -3.05463   CGCGCATCCAGCCTC TGCAGCAG-GTCGC-TCAGGCG-CTG GCG CAGGCGCCCGGTGCGGCGCTGGTGCA TTGACTGCAGCAGGT  59 348
LTC53_RS08485 NONE
LTC53_RS08490 1950562 .. 1950576 +  -7.8  -3.53811   CACGGGGCCGCATTG               CGCCTA AAA TGGGCG               TTTCCCCACGCTGCG  60 68
LTC53_RS08495 1951493 .. 1951545 +  -9.7  -3.04144   CCGCCTGCGGCAACT GCGCCGGGCGC-GCGGTGGCCAGCG GTGCG CGC-GACCAGCGCAGCGGCTGGCCC TGTTCGGCCTCCAGC  59 361
LTC53_RS08505 1954955 .. 1954982 +   -14  -3.05384   TCAGGGTCGAACAGG        CGCCAGCGGCGC GACG GCGCAGCCGGCG         TTGGCTCAGCGCGAA  72 337
LTC53_RS08520 1956931 .. 1956956 + -16.9  -4.57073   GCGTCACTGTCGCAC         CGAAGGCCGGG CTTG CCCGGCCTTTG          TTTTTCGCAGACATG 100 49
LTC53_RS08545 NONE
LTC53_RS08550 1965521 .. 1965531 +  -2.4  -4.75174   TTCGTTGTCGCTCAT                 GCGC CTT GCCC                 TTTTTCGATTACATC  74 356
LTC53_RS08560 1966118 .. 1966134 +  -3.5  -2.80016   GGTTGAGTGCGCACG              ACGCGAC GAC GGCGCGA              TAATTGGTCATCACA  41 35
LTC53_RS08565 1967047 .. 1967071 +  -3.4  -3.06261   AGCGGCTGCGGTATC         GGCCG-CGCGC GGAC GGGCGACGGGC          TGTTCCCGCTTCACA  42 39
LTC53_RS08570 1967527 .. 1967544 +  -5.5  -3.14132   CTGCGCCGCACAACA             GCCGGTA GCAT TAGCGGC              TTCGTCCCCCACAAA  49 56
LTC53_RS08575 1968214 .. 1968235 +  -7.1  -4.56597   GCAAGGCACCGCCGC           CGCCGCCCG GGGT CAGGCCGCG            TTTTTCCAGCAACGG  77 168
LTC53_RS08585 NONE
LTC53_RS08590 1970492 .. 1970537 + -13.3  -3.28712   ACGGAAGTCACTCCA GTGACGCGTGGCGGT-TGGCTG GCG CAGGCATGCGGCTGCGCGTCAC TTCTCGACGAAGGCG  73 234
LTC53_RS08625 1978613 .. 1978630 +  -2.5  -4.08216   GCTTGAGGCGAGAAC             CGCAGCG ACCG CGCGCCG              TTTTGCCGCAGGTGC  58 470
LTC53_RS08630 1979198 .. 1979228 +  -5.2  -4.32067   TCCAGAACGCTCTCC       TGTTTCCGGCACGT TAG GCGCGCCGGCATCG       TTCTTTTCTGGAGTC  72 9
LTC53_RS08635 1981415 .. 1981453 + -21.8  -3.55444   CGATGGTTCGCCCAG   CGCATGCGGCATCCGC ACGCCAG GCGGACGCCGCATGCG   TTTCAGGCGTGCCGC 100 136
LTC53_RS08650 1983730 .. 1983747 + -14.1  -4.74103   CGCGCGCAGCAAAAA             GGCCCGC AGTC GCGGGCC              TTTTTGCGTTGCGGC 100 77
LTC53_RS08665 1986199 .. 1986218 +   -10  -3.18264   AATTCGGCCGCCAGC            CG-GCGCAG CCG CTGCGCGCG            TTCGTAGGTGACCGG  60 436
LTC53_RS08680 1988021 .. 1988047 + -11.6  -5.40072   CAGTAGCGTGGTGAG        C-GAGGCCGGC CGCAGC GCCGGCCTCTG         TTTTTTTGGCGGCGC 100 53
LTC53_RS08685 1989486 .. 1989502 +  -2.9  -3.57615   AGGCGTGGCGCTGAG              CGGCC TGGCAGC GGTCG              TTTGGGCCGTATTCA  49 244
LTC53_RS08690 1990158 .. 1990207 + -11.4  -3.05384   GCGCGTCGGGTCCGG CGCGTTCGGTCGCAGCCGGCGCGA GGTG TCGCGGCG-CTGCGGC-GATCGCC TTGCGTGGCGGGGCC  65 53
LTC53_RS08695 1991789 .. 1991808 + -10.7  -2.53015   GGGCCGTGCGCCCGC            GCTGGCG GTCGAG CGCCAGC             TGCGTTGCGAGATGT  59 40
LTC53_RS08700 1993401 .. 1993438 +  -5.3  -3.05384   CCGCGGCAGCGCAGG   GCAGGGCGCTGCGATTG ACGC CCTTCGCTGCGCCATGA    TTCACTCCGGCCACG  47 83
LTC53_RS08705 1994928 .. 1994948 + -10.3  -3.16191   GCTTCCTGAACGGGG            CGCGGTGCG GCG CGCGCAGCG            TTCATCCCCGTCTCG  62 32
LTC53_RS08710 1995738 .. 1995770 + -21.4  -3.32844   ACCGCCGGGCTGGAA     CGCG-AACGGGCCGC TGAT GCGGCCCGTTTCGCG      TTGTGGCGTCACCCG 100 47
LTC53_RS08720 NONE
LTC53_RS08725 NONE
LTC53_RS08730 1999329 .. 1999348 + -12.8  -2.70932   ATGCAGCGTCGTAGG            CCGGTCGC GCTG GCGGCCGG             TGCTTGCCGGCCGGG  65 78
LTC53_RS08735 NONE
LTC53_RS08740 NONE
LTC53_RS08745 2005134 .. 2005148 +  -2.8  -3.73647   GGTGGCATGGATGTC               CTGC AGGATGC GCAG               TTGTTCCTGGGTCAA  53 328
LTC53_RS08755 2008120 .. 2008140 +  -8.3  -3.58343   AAACGATACCTCAAA            CGATACCTT GAA GGGGTATCG            TTTGAGGGTCGTAAA  62 469
LTC53_RS08770 2011936 .. 2011960 +  -2.8  -4.47707   GTCCTGCTTGCCCTT         GG-CAAGCGCG ATCT CGAGCTTGATC          TTGTTTTTGCTCCAG  68 487
LTC53_RS08780 NONE
LTC53_RS08785 2013130 .. 2013140 +  -2.4  -4.54323   GCGCCCGCTTACTCG                 CTGC GGC GCTG                 TTTCTTCTTGTCCTT  67 63
         fur 2014189 .. 2014242 +  -7.4  -3.05384   TTCGTCGCGACTGAA GTCGCTCCCACAGGGGGCTT-G-CGG CGAG CCGGCTGGGTGCACTGTGGGAGGGAC TTCAGTCCCGACGCC  53 167
        hrcA 2017503 .. 2017542 +  -7.1  -2.98823   ACACAGCATCTTGAA TCCGCCGCACACGC-CCAC ATAG GTGGTGCG-GTAGGGCGGG  TGTATCTCCCGCCAG  51 154
        grpE 2018091 .. 2018141 + -13.9  -2.93089   CCAAGCACGATTGAC GCGTGCCGCCGGTGCGCGGCGCCTG AAT CGGGCGCGGC-CGC-GGCGCAACGC TAATTTGCGGTGATG  71 27
        dnaK 2020179 .. 2020212 + -13.1  -2.93089   CTCGGGGCTCGGGAC     CCGGGACTCGGCAAG GCGA CTTGCCTGGTCCCGA      TGGTTTCCGGTCCTG  69 49
        dnaJ 2021626 .. 2021655 + -15.2  -5.26316   CGGAGCCGCAAAGAA       GTGCCGCTTTTT CTTTAA AAAAAGCGGCAC        TTTTTTATCAAATCG 100 197
        pdxY NONE
LTC53_RS08835 2024333 .. 2024347 +    -7  -3.31415   CGGCGCGTCGTGCTG               CGCCTG CTG CTGGCG               TTGGGTTTCGTCCTG  55 505
LTC53_RS08865 2032109 .. 2032127 +    -8   -4.2828   GAGCGGCGGGCTTCA             GCGCAGCG CAT TGCGGCGC             TTTTCGTCGATCCAC  74 217
LTC53_RS08900 2042204 .. 2042261 +   -22  -2.52543   GAACCTGAGCGCGGT GCGCGCTGCGCGGTACGCGGTCCGGCCG CGAG CGGCCGG-CCGCGTGGCGT-CGGCACGC TCAGTTGCCGGCGAT 100 33
LTC53_RS08915 2045584 .. 2045627 +  -5.1  -2.62396   GGCCGGCTGCAACGC CGCCGCCGTTGCGCCTGGAT CGGGA ACCCGGCCGCG-CGGCGATG TCGTGTCGGGCGCTG  44 55
LTC53_RS08920 2047239 .. 2047281 +  -4.6  -3.54129   GGCGTGGTGCCCCGG CGTGGTGCGGCGGTGCCGTG CCA TGCGGGGCAGGCGTATCGCG TTTGGAGCGGATCTA  52 41
LTC53_RS08960 2052854 .. 2052870 +    -5  -2.93991   CGACAATGCGGCCTC              TGCGCC ATCGC GGCGCC              TCTAGTTCACTTCCA  44 69
LTC53_RS08965 NONE
LTC53_RS08970 NONE
LTC53_RS08975 NONE
LTC53_RS08980 NONE
LTC53_RS08985 2058361 .. 2058393 + -18.4  -3.54424   GCTGCAGGCACAATC      GGGGGCGACGCCGT GAGCG GCGGCGTCGCCCAC      TTTCCCGGAGTCGGA  95 10
LTC53_RS08990 2059448 .. 2059468 +  -3.2  -3.27029   AGCGGCACGCCCTTG           CGTCGCGCG TAGT CG-GCGACC            TGTTCCTTGGTCAGC  47 259
LTC53_RS09010 NONE
LTC53_RS09015 NONE
LTC53_RS09020 2067970 .. 2067983 +  -3.7  -4.11216   TCCCAGGCAAGGCTT               GCGTC TAAC GCCGC                TTTTGACGATGGCGG  61 84
LTC53_RS09025 NONE
LTC53_RS09030 2070157 .. 2070186 +  -3.3   -4.1552   AGCCAACTGTTTGGC       GTAGGCGGCGGGC GTCA GCCCGCCCAGCAC        TTTCTTGGGCCGCTC  63 166
LTC53_RS09040 2072031 .. 2072051 + -10.4  -5.28481   AGACAACACAAAAAA            CCGCCAGC ACAAA GTTGGCGG            TTTTTTAATTAAATA 100 109
LTC53_RS09120 2089769 .. 2089787 + -10.2  -2.62616   CGGTCGCTGCATCGT             GCGCGGGT CGA GCCTGCGC             TGATCTCCAGGATCA  57 4
LTC53_RS09130 NONE
LTC53_RS09135 2093534 .. 2093579 +  -5.9  -2.95774   CGATATCGCCGCGAT GTGGGCGCTGCGCACCCGCTG CGTG CGCCAGGTGTTCAGCACGCAC TATGTGGTGCATGTC  49 94
LTC53_RS09140 2095871 .. 2095897 + -19.4  -3.14132   GAGCTGCCTCGGGGA         TGCGGGCGCGGC TCA GTCGCGCCCGCG         TTGCTGCAGCCACGC 100 39
LTC53_RS09155 NONE
LTC53_RS09160 2098788 .. 2098824 + -10.8  -3.54741   CAACTGCAGCCGCTG   GTGGACGC-GCTGTAGC AGCG GCTTCAGCCGCGACCGC    TTTGCACGCGTCGTG  70 11
LTC53_RS09170 2101032 .. 2101060 + -12.3  -3.14344   CCGCAGCGCATGGCC        GCGTGCGCAGGCC CGC GGCCTGGGCGGGC        TTGGTGCGCAAAGTA  69 57
LTC53_RS09175 2101623 .. 2101633 +  -8.2  -2.77899   ACAGCAGCAGCATCG                 CGCC GAA GGCG                 TAGTTGGTGAACGGG  52 257
LTC53_RS09190 NONE
LTC53_RS09195 2105738 .. 2105748 +  -8.2  -2.72344   AGTTCTTGACCTGCA                 CCCG GGT CGGG                 TCGTTGCCCATCACC  52 231
LTC53_RS09210 2110054 .. 2110087 + -14.5  -4.40358   GCGCCCTGTTGCGAC     CTGCGACGCCCCGGC TGCT GCTGGGGCGTTGTTG      TTTTGTGCGGTCGAT 100 45
LTC53_RS09215 2111967 .. 2111979 +  -3.3  -3.37344   CACCCCAATCCCTCT                CTCCC CAC GGGAC                TTCCTTCGGTCGCCG  48 156
        kdsA 2112939 .. 2112967 + -11.8  -3.53012   CGCTGCGCCGACCCG       TGCA-CG-GCCCCG GCG CGGGGCGCGGTGCA       TTTGGCAAGCAGCGG  72 101
         eno NONE
        ftsB NONE
        ispD 2115383 .. 2115437 +  -6.4   -5.0925   TGTTCCTGCGCGCGC GGCAGCCGTGAC-GCGGC-CG-CGCCGC GCT GCGGCGTCGCGCCGCCGACACC-TTCCC TTTTTCCTTTTGCGA  86 15
        ispF NONE
        truD 2117251 .. 2117286 + -11.8  -3.21099   CTGGCGCAGCAGCGC    CTCGGCCTGCGTCGCG TTGG CGCCATGCAGGTCCAG     TTCGTCCTGGGCGGA  64 258
        surE NONE
LTC53_RS09260 NONE
LTC53_RS09265 NONE
LTC53_RS09270 2120642 .. 2120659 +  -2.5  -4.86613   CCGGCTCGGCGCAGC             GCGCAGC TGTT GCCGCTC              TTTGTTTTGCTTTTG  76 68
        rlmE NONE
        ftsH 2124213 .. 2124232 + -13.6  -5.45652   CGGTTCGATCAGAAA            GCCAGGGA GCGA TCCCTGGC             TTTTTTGTTGCCGGT 100 50
        folP NONE
        miaA 2126367 .. 2126381 +  -3.5  -2.94144   CTGGATGCCGCAGTA               GCGGA CTTTC TTCGC               TGATTTGGCTACACG  43 8
         hfq NONE
        hflX 2128461 .. 2128476 +  -3.2  -3.51232   ACAGCTGTGGCGAAT              TGGGCT ACAA AGCGCA               TTGGTTTCCCGAGCA  49 355
LTC53_RS09315 NONE
LTC53_RS09320 2130687 .. 2130706 +  -5.6  -3.35679   TCTCGATCTGGCGCA            GCG-GCCGC TGA GCGGAGCGC            TTGTCGCTGCCAGCG  53 15
        lexA NONE
        recA 2132728 .. 2132773 +  -9.8  -3.01712   AGGCGTGATGGTCTT CTGCCGGGGGAG-CG-GTGG AGTCAGTG CCGCTCGTCTCCCTCGGTAG TCTTGAGCAAGCCAG  60 33
        recX 2133335 .. 2133357 +    -4  -2.54173   CTACGAGCCGGAGGA           CTGAGCGGGC CGG GCCTGCTAAC           CTTGGTGGATTGTCT  40 22
        alaS 2136104 .. 2136129 +  -6.7  -3.18274   CCTGAACACGAACTC         GCGCCGCCTTG CTGG CAGGGCGCGGC          TTCCCTTAACATCGA  52 36
        csrA NONE
LTC53_RS09350 2136628 .. 2136654 + -17.4  -5.45802   CCATTGTCAAGAAAC         CGCCCGCAAATC AAC GATTTGTGGGCG         TTTTTCTTTTCCCGC 100 38
LTC53_RS09355 2137759 .. 2137780 +  -4.3  -3.29461   AGGCGCCGAGGTATG           CGTCC-CTGC TCA GCTGCGGGCG           TTGTCGCGCGCCTTG  49 92
LTC53_RS09380 2142773 .. 2142826 +  -8.7  -4.15044   GGTCTGTTCCGCCGG TGCTGCGGCGTTGTACGCGCCGGGCG TCG CGACCGG-GAGGATAATGCCGCATCC TTTCTTCCCCCAGGC  72 50
LTC53_RS09385 2144135 .. 2144153 + -11.8  -6.30182   CACGCAAAAAAAAAA             CGACAAAC CGG GTTTGTCG             TTTTTTTTTATCTGA 100 317
LTC53_RS09410 NONE
LTC53_RS09415 NONE
LTC53_RS09420 2148598 .. 2148623 +  -3.9  -3.77722   TGCAGCCCGCAGGCG         CTG-GCGGCGAA TAG TGCGCCGAGCAG         TTGTTGCTGCTTGAA  55 446
        dapA NONE
LTC53_RS09455 2153782 .. 2153811 + -19.3  -4.07885   GCCGTTGCGATAAAC       AGACACGGGCGCC GCAG GGCGCCCGTGTCG        TTTTGGGGAAAGGTG 100 70
LTC53_RS09490 2160534 .. 2160549 + -11.8  -3.20227   GGCTGAGCGGGATAG              CGCGGC GGCG GCCGCG               TCTTCCTGCTTCGCG  66 35
        prfB NONE
        lysS 2164418 .. 2164444 +  -3.5  -3.73122   CGGAAGTGAGGCGGT         TGAGTCGGCGC GGCCG GCGCCGGAGCG         TTTCCCGTTGTTGTC  54 120
LTC53_RS09515 NONE
LTC53_RS09520 2168021 .. 2168031 +  -3.2  -3.34344   CGGGTTGCGCGAGAT                 TGCG TGC TGCA                 TTCATTGCCAGATAC  47 241
LTC53_RS09535 2171107 .. 2171163 + -10.7  -3.05384   CGAACGGCGATGCGT GCCCGCGCGAG--CGCGACGGCGCGCG CAGGA CACGCGCCGTCGCGACCTCAGGCCGCC TTGCGTGCCGCCAGC  62 195
LTC53_RS09545 NONE
LTC53_RS09550 NONE
        acnB 2177786 .. 2177842 + -14.2  -2.90723   GCGGCGTGCCGTTCT CGCCGCCGG-CGCCGACCGCAATGGCG TACA CGCCGTGGCCGCTGGCGACCAGCAGCG TGTGCTTGGCGCTGC  68 428
LTC53_RS09615 2192077 .. 2192093 +  -7.9  -4.13728   CGACGCGCAGCGTGT              CCTGGCC GTT GGCCAGC              TTTTGCGGATCTATG  73 265
LTC53_RS09650 2203976 .. 2203992 +  -8.7  -3.33162   AGCTGCGTTTCTGTC              CAGCTGT GTA GCAGCTG              TTGTACCGTCGCCTG  58 15
LTC53_RS09690 2218588 .. 2218605 +  -3.3  -3.84639   GTGGCGCCGGAGATG             CCGCCGA TGCG TCGGTAG              TTGTTCTCGATGTTC  58 318
LTC53_RS09860 2258321 .. 2258344 + -13.2  -2.91511   GCCACAAGTGGTCTC          CGC-CGACCAG ATT CTGGTCGAGCG          TGTGATATCTCTCTC  68 180
        flgA 2286471 .. 2286483 +  -2.6  -3.05384   TGGCCTAAAGTTCGT                CGGT GTAGG GCCG                TTACCTACACCGAAC  41 45
        flgM NONE
LTC53_RS10025 2287254 .. 2287294 +  -2.7  -3.82097   CCACGCTCCGATAAT GGCATCGGCGTATATTGAGC GTCC GCTC-GT-TAC-CCGTTGCC TTTCGTGAATTTCGC  56 103
LTC53_RS10030 2288583 .. 2288603 +  -2.3  -4.11216   AACGGCACGGCAACA            CCGGCACGC CGG GAGGGCCGC            TTTTCCGAGTCCCCA  58 80
LTC53_RS10045 2295448 .. 2295470 + -14.8   -3.7829   CGCGGCGGGCGTTTG           CGCGGCGCTG TTG CAGCGCCGCA           TTTGCTGGCTATACT  87 46
LTC53_RS10050 NONE
LTC53_RS10055 2299282 .. 2299294 +  -6.2  -3.10715   CGCTCGGAACTGCGA                CCGC ACAGA GCGG                TTCAATCGTGATCGG  51 242
        clpS 2304196 .. 2304206 +  -4.6  -3.53811   TGATAGTGGTAGGCG                 TCGG TCA CCGG                 TTTGCACGGACTAAC  52 38
        clpA 2306673 .. 2306689 + -15.1  -4.56775   CCGATGAGACGAAAA              GGCGGCC GAG GGCCGCC              TTTTTCACAACCGCT 100 109
LTC53_RS10120 2312699 .. 2312717 +  -5.8  -3.21924   CCGATGTCCCGAACC             GCCTGCGC CCT GCGCCTGC             TGTTGTGCGCCGTCC  51 139
LTC53_RS10125 2314620 .. 2314647 +  -2.6  -3.17553   GCCGCATGCAGACCG        GGCAGTGAG-CGC GCC GCGTCTGATCGCC        TATTCAGCTTTTTCA  42 18
        lolA 2315436 .. 2315462 +  -2.2  -3.53224   GCCGACCGTGCGCAT        CGCCTCGGCCA TCTGGT TGGTCT-GGCG         TTTGACGAAGAAGTC  47 134
LTC53_RS10140 2321286 .. 2321311 + -10.4  -3.09516   CAGGGCACATCGGCC         CGCGGCTGGA CATGCT TCTGGCCGCG          TTCCATAATGCGCCC  62 125
LTC53_RS10145 2323155 .. 2323211 +  -9.6  -3.91196   CGGGAATGGTGTCCA CGTCGA-GATGGTGGAG-CGCTCT-GC CGTCGA GCGAGAGTGACTCCACCCTCGTCGTCG TTTCCTCTATATCAC  73 339
LTC53_RS10225 NONE
LTC53_RS10230 NONE
LTC53_RS10235 NONE
LTC53_RS10240 NONE
LTC53_RS10245 NONE
LTC53_RS10250 NONE
LTC53_RS10255 2341619 .. 2341663 +    -2  -3.36515   GGGCGCAGCGGCGCC GCT-GGCGGAGCGCGCATGAA ACGT TTGTTGCGCCTGCCGTCGAGC TATTTCGGCCTGCCG  46 7
LTC53_RS10260 2342796 .. 2342808 +  -2.7  -2.53876   CGCCGTTGCCACCTT                TTTCT CCG AGAAG                TGCCTTGCCATGAAA  39 0
LTC53_RS10265 NONE
LTC53_RS10270 NONE
LTC53_RS10275 NONE
LTC53_RS10280 NONE
LTC53_RS10285 NONE
LTC53_RS10290 NONE
LTC53_RS10295 2350250 .. 2350266 + -15.1  -3.09516   CGATGTGCCAGGTAA              GGCGGCC GAC GGCCGCC              TTACCTGATCACACC  76 298
LTC53_RS10310 NONE
LTC53_RS10315 2354581 .. 2354608 +  -7.6  -2.80994   AGCGTCGGGCCTTGC        GGCTTCGGACAC TGTC GGGGCTGAAGCC         TCTCCTACAGTTGAG  52 109
        dapB 2355600 .. 2355630 +  -8.8  -4.15044   GCCTGTTACCCATCG       CCACGGACCCGGAG AAG CGCCGAGTTCGCGG       TTTCTTGCAGCCGCA  72 100
        carA NONE
LTC53_RS10330 NONE
        carB NONE
        greA NONE
LTC53_RS10345 NONE
        recJ 2364063 .. 2364075 +  -3.3  -4.17048   TGTATGTACAAGGAG                GCGAG AGA CTCGA                TTGTTTTCAAGCCAC  63 477
LTC53_RS10365 NONE
LTC53_RS10370 2365226 .. 2365242 + -10.8  -4.63218   GCCGAAGAAGGGGAA              GGGCGC ATAAC GCGCCC              TTTTCTTCGGGGGAA 100 16
LTC53_RS10375 NONE
LTC53_RS10380 NONE
LTC53_RS10385 2366447 .. 2366495 +  -4.3  -2.71791   CCCACCACGTCCGCC TTCGGGGGGGTAGGGGGGGAC TTAGCTT GACCCCACATTGCCGCCCGAA ATTTGCAGCAGACCT  43 104
LTC53_RS10390 NONE
LTC53_RS10395 NONE
LTC53_RS10400 2367315 .. 2367334 +   -15  -4.98531   GCGGTTCCCACAGCG            GGGGAGGG GCGA CCCTCCCC             TTTTTCATTTGAGAG 100 47
LTC53_RS10405 NONE
LTC53_RS10410 NONE
LTC53_RS10415 2370756 .. 2370779 +    -3  -3.81951   TTCCTGCCTTGGGTA          CTTCTGAGGC CAAG GCATCCGGAG           TTTCATGCTCTGAGG  56 390
LTC53_RS10430 NONE
LTC53_RS10435 NONE
LTC53_RS10440 2378080 .. 2378096 +  -5.1  -4.59773   GTAGCTCTCGGATCA              GAGGTTG GAT CAACATC              TTTTTGCACGTAAAG  77 393
LTC53_RS10455 2381575 .. 2381586 +  -2.2  -4.07568   TGGGGTGTCTTGCCT                TGGC GATC GCTA                 TTTTCAGGGACGCAC  58 156
LTC53_RS10460 2383450 .. 2383475 +  -5.3  -3.62597   TACTTGGAATCGTCG         CGTCGCAGCGC CCAG GATTTGCGACG          TTGTTCGACGCTGCG  57 157
LTC53_RS10465 2384025 .. 2384041 +  -3.6  -3.85909   GTCCTGAGCCTGGAC              AAGCGG GCCAG CCGCTC              TTTGCCTTTCCATCC  57 173
LTC53_RS10505 NONE
LTC53_RS10510 NONE
LTC53_RS10515 2441881 .. 2441893 +  -9.1  -3.05384   CGGGGAAAAAGACGT                CCTGC GGT GCAGG                TTGGATGCGCCGCGC  57 165
LTC53_RS10525 NONE
LTC53_RS10530 2447059 .. 2447105 + -30.4  -4.23213   GGCCACGCAACGGTC GCTGCTCGCGACCAGATTGCGC ATC GGGCAATCTGGTCGTGAGCAGC TTTATTCGCTATCGA 100 210
LTC53_RS10540 2449127 .. 2449140 +  -3.7  -3.01924   TCTTCGCGCAATTGG               AGCGC AGTG GCGCC                TATTGACCGAACATC  44 6
LTC53_RS10545 2450578 .. 2450594 +  -2.9  -3.15544   AAGCGATCTCCATTA              CCGTG GTGAAGA CGCGG              TTCCTGGGCGTCCAC  44 113
LTC53_RS10570 2456837 .. 2456852 + -11.8  -3.49232   GCAAGCCGAACAAGG              CCCCGC TCCT GCGGGG               TGTTGTCTTTCGGCG  72 85
LTC53_RS10575 2458145 .. 2458159 +  -5.6  -3.28712   TACGACGCGGCCAAG               GCCAAG GCG CTGGGC               TTGTAAGCCGCCGGA  51 5
LTC53_RS10580 NONE
LTC53_RS10585 2460121 .. 2460138 +  -5.5  -3.90318   GTCGGGCCGGTTGGG             CGCTTTG CAGT CAATGCG              TTTGTCCGATGATGG  60 346
LTC53_RS10625 2463559 .. 2463569 +  -2.4  -2.52464   CGGATCGGGAGCCTG                 CCCC GCA GGGA                 TCGATTCGAGGGACA  37 47
LTC53_RS10630 2467493 .. 2467548 +  -9.1  -2.55074   GCGAAAGCCGAATCG GCGTGACCCG-GC--CGGCGCGGGCCGC ATGCC GCGGCC-GCGCCGACGCACGCGT-GCGC TCAGTTGCGCTTGGC  54 20
LTC53_RS10650 2473525 .. 2473545 +  -6.7   -3.1552   AGGCGCACGTTCGGG            TGCCGGCAG CGG CCGGCGGCA            TGTTCGTAGGTGGCG  52 207
LTC53_RS10685 2478495 .. 2478508 +  -4.5  -3.30243   TCAGCGACTTGCCAT               GCTTG CCCA CAGGC                TTGTGCAGCATCGAT  49 247
        ppsA NONE
LTC53_RS10710 2484252 .. 2484279 +  -3.2  -3.34895   TGTTCAGTCCCGAGG        CGACCGTCGGCGC CCA GCGCCG-CGCCAG        TTCCTTCAGCGTGGA  47 211
LTC53_RS10730 2487511 .. 2487521 +  -6.8  -3.57561   TGCACGCCTTCCGCT                 TCGG CCG CCGA                 TTTCGCCGCTTCCGC  57 232
LTC53_RS10765 NONE
LTC53_RS10770 2499589 .. 2499599 +  -6.8   -3.3692   CCGCGCTATGCGCAG                 GCCT TGC AGGC                 GTTTTTGCGCTGACG  56 2
LTC53_RS10830 2512466 .. 2512482 +  -9.3  -2.70932   CCGAGGCCGGCTTCC              TGGCGCG CAG CGCGCCC              TGATTCCGCAACACC  55 6
LTC53_RS10835 2514962 .. 2514976 +  -3.4  -3.67622   CGGAAAGTCAAAAGC               GCGCTG TGG CGGCTC               TTGCTTTTCCGAGTC  53 69
LTC53_RS10840 2516268 .. 2516297 + -19.5  -3.05596   GCGCGTTTGGGCAAC       GAAAAAGGGCAGC CCAG GCTGCCCTTTTTC        TTGCATCGGCGGGTG 100 44
        ykgO 2525079 .. 2525092 +  -9.5   -5.4505   GGTCATCGACGAAAG               CCGCC TTCG GGCGG                TTTTTTGTTGCCGAA 100 83
LTC53_RS10890 NONE
LTC53_RS10895 2526618 .. 2526628 +  -4.6  -3.09516   AGGGCGTGCTGGCGG                 CGTG ATC CGCG                 TTCGCTGATCGAAGG  47 21
LTC53_RS10900 NONE
LTC53_RS10905 2529230 .. 2529261 +   -13  -4.08216   CGCCATGTCGTGAAC      ATTGTGGGAGGGGC TTCA GCTCCTCCCACAGG       TTTTCCGCGCGATGC  85 87
LTC53_RS10925 NONE
LTC53_RS10930 2538421 .. 2538458 +  -9.8  -2.75481   GCAGGCCCGGCTTGA  ACGGTACCGCCGGCGGCG GCCG CGC-GCCGGCGG-GCTGG   TCGTTGAGGTTCGGA  56 302
LTC53_RS10945 NONE
LTC53_RS10950 NONE
        zupT 2542501 .. 2542517 +  -3.5  -2.87132   GTCCACCACGCCCTG              AGCCGGC AAA GGCGGCC              TGTCTGAACGGACGC  43 25
LTC53_RS10960 2544455 .. 2544495 + -15.4  -2.70932   ACAACGGGTAGACGG CACG-GGCCGGGCGGCG-TG CGA CAGCGACGCCCGGCCGCGCG TGGTTCAGCCGCCCA  75 30
LTC53_RS10970 2549445 .. 2549460 + -11.8  -5.36441   CGCAACAGAAAAAAA              GCGGCC TTCG GGCCGC               TTTTTTGTCTGGGCG 100 56
LTC53_RS10985 2558267 .. 2558290 +  -2.2  -3.61398   TGCCGATCATCGCAG          GCCCCGTTGC AGAG GCGGCCGGGA           TTCTTGCAAAAAGCA  48 70
LTC53_RS11015 NONE
LTC53_RS11020 2565459 .. 2565476 + -11.3  -3.51633   GTCGTCATGGTCAAA             CTGCTGC TGTT GCAGCAG              TTGTATAACCTCTCT  70 343
LTC53_RS11045 NONE
LTC53_RS11050 2570486 .. 2570524 + -13.8  -2.71712   GATGCCGCGGCGGGC   GACGGGAGGCAACGCG GCGCCAA CGCGCTGTCTCCCGCC   ATTTCACGCCACCCG  69 45
LTC53_RS11065 2573466 .. 2573487 +    -3   -3.4277   ATCGACCGCCGCCTC          CCAG-GC-CG GCAG CGCGCGCTGG           TTCTGGCTGTTCGCT  47 507
LTC53_RS11075 2574138 .. 2574153 + -11.8  -4.27117   CCAGATTCAGACAGA              GCCCCG TCAG CGGGGC               TTTCTCTTGTCGGAC  91 38
LTC53_RS11080 2574293 .. 2574321 + -23.3  -3.84451   ATCTGCGATTCCGAA        CGCCCGGTAGATC CAC GATCTACCGGGCG        TTTGCGTTTGCGCGC 100 39
LTC53_RS11085 2578291 .. 2578304 +  -8.1  -3.01625   GCCAGAACGAAAAAA               GGACC CGAA GGTCC                TGATTTCATCGTTTT  53 144
LTC53_RS11150 2591956 .. 2591974 + -12.4  -3.07443   TCATCGCGGCTGAAG             CCGCTCCT ACA AGGGGCGG             TTGGCTGCACTGTAG  67 223
LTC53_RS11200 2599782 .. 2599823 +  -3.5  -3.29013   TGGCAGCCACTGCGC GACGG-CCTCGCGCGCTG AACCAGC CCGCCCGCGACGCCCGCC TTGGCTTATTGCGGT  47 8
         zwf NONE
         glk 2603809 .. 2603825 +  -6.5  -3.05384   GGTCGATGCCGAACG              CGAATCC CCA GGAGTCG              TTGCATGAGCCCCAC  49 1
         pgl NONE
         edd NONE
LTC53_RS11230 2607433 .. 2607471 + -21.3  -2.51725   GACTCGAAAAGCGAA  CCACAAAAAAAGCGCCGG CATG CCGGCGCTTTTTT-GTGG   CTGTTGCTGTCGCGT 100 67
LTC53_RS11280 NONE
        scpB NONE
LTC53_RS11290 2624689 .. 2624708 + -12.8  -5.09762   CTCGAACAGACGGAG            GGCGCCGT GGAT GCGGCGCC             TTTTTCTATTGGGCT 100 73
LTC53_RS11300 2626753 .. 2626765 +  -4.7  -2.73875   CCCACGCTCAGGCCG                CCGCC CTT GGCGC                TGATCTTGACCGGAA  43 341
        ccmA NONE
        ccmB 2630700 .. 2630732 +  -8.9  -2.94704   TTGAGCTGAGCGTGT      CGGCGCCGCGTGCGC GCG GCGCGCGCCGTACCA      TCTGGTCTATTGTTG  55 32
        ccmC NONE
LTC53_RS11335 NONE
        ccmE 2632231 .. 2632244 +  -3.7  -4.11216   GCCAACGCCCAGGCC               GCGCG CGGC CCCGC                TTTTCCGGGTCCCGA  61 89
LTC53_RS11345 NONE
LTC53_RS11350 NONE
LTC53_RS11355 NONE
LTC53_RS11360 2636506 .. 2636520 +  -2.8  -2.63723   GCGGCACGGATAGAA               TCGG CGCATGA CCGA               ATTCATTCCTCCCGG  39 174
LTC53_RS11365 2637805 .. 2637827 +  -9.1  -3.09516   CGGTCCTGAGATGTG           GTCGCGAAC AGATG GCTCGCGAC           TTCGCTCGTCGCGGC  59 205
LTC53_RS11380 NONE
        cydB NONE
        cydX 2644714 .. 2644726 +  -6.2  -2.85668   GGATCTTGCCGAATG                CGGG CGACC CCCG                TATCATGTGCGGCTC  48 55
LTC53_RS11395 2644841 .. 2644864 + -11.8  -5.60993   CACGGTCACAAAAAG          CCTGGAAAAC GTCA GTTTTCCGGG           TTTTTTTGTGCCCAC 100 45
LTC53_RS11400 2647492 .. 2647541 +  -4.2  -3.53012   CGATGTAGCTCACCT GCTGCGGCGTGTGCCAGATGCGCT GCGT GGC-CTTCTGGTAATCGCCG-GGC TTTGGACCGGCCAGC  51 253
LTC53_RS11415 2650239 .. 2650257 + -13.2  -3.06183   CCGCGGCGGCGCCAA             CCGTTTGC GCC GCAAACGG             TTGGGTCAAGCTCCG  70 432
LTC53_RS11430 NONE
LTC53_RS11435 NONE
LTC53_RS11440 2660823 .. 2660839 + -15.1  -5.79595   GCACGCAACAAAAAA              GCGGCCG GAT CGGCCGC              TTTTTTGTTTTGAGC 100 101
LTC53_RS11465 2664406 .. 2664442 +  -2.2  -4.56597   AATTCCCGGAGCAAC    GAAAAAGGGCTTGCGG ATGAC TTGCAAGCCCTTGATA    TTTTTGGCGCCCGAA  67 40
LTC53_RS11470 NONE
LTC53_RS11475 NONE
LTC53_RS11480 NONE
LTC53_RS11485 NONE
LTC53_RS11490 NONE
LTC53_RS11495 2669239 .. 2669249 +  -4.6  -3.22491   CGTCCGCAAGATGGC                 GGCT GAA GGCC                 TTCGTGATCCAATTT  47 244
LTC53_RS11520 2674484 .. 2674510 +  -4.2  -2.70932   AGCCGGCTCAGTAAG         CTGAACCGCGCT TGC GGCGCGCGTCCG         TCGTTCACGGGCGGC  41 27
LTC53_RS11525 2675020 .. 2675047 +  -5.5  -3.64703   CCGGCAATGGAGAAC        GCCATCGCGAT GCGGTG GTCGCCGTGGC         TTTCAATGACGCCGC  57 239
LTC53_RS11535 2676335 .. 2676359 +    -5  -4.86613   TTGAATAAGTAAGTC         GCGCAAAGCGC GAAA GC-CTTTGCTC          TTTCTTTTGCTTTTG  82 33
        msrP 2679910 .. 2679950 +    -3  -2.63723   GGGACTCGGGACTCG  GGGCCCGGAAAAAGCCGG CGGTT TCGGCGTTGGGCGGGCGC  GTTGCTTGGTCGGGG  39 54
        msrQ 2680696 .. 2680721 +  -8.9  -2.71364   CGGGTTCCGCTGCGG         CGG-CCGGCGCG ACG CGGGCCGGATCG         TGCTTCAGCGGCTCG  52 110
LTC53_RS11565 2681766 .. 2681785 +  -6.4  -3.28712   GCTGGCCGAAAAGCT            GGGCTG AGCAGTAA CAGCCC             TTATCCCGCCGGGAG  53 19
LTC53_RS11575 NONE
LTC53_RS11580 2684635 .. 2684653 +  -3.8  -5.01732   CCCGCTGAATAAGGT             TTTGTTGC AAA GCAGCAGG             TTTTTTCCGAAAATT  81 29
LTC53_RS11585 2686203 .. 2686222 +  -3.6  -3.13403   TTCTTCCACGCTCAG            TGT-CGGCA CGC TGTCGTACA            TCTTGGTCGGCGCGA  45 391
        hutI NONE
        hutH NONE
        hutG 2694065 .. 2694086 +  -5.8  -3.05844   GAATCCTTCGCAAAC           CTCCGCAC CTGCAT GTGCGGAC            TCTTCAAATCAAGGA  47 47
LTC53_RS11620 2695993 .. 2696005 +  -3.3  -3.15861   GAAAATACAGGCAAC                GTCTC AAG GAGCC                TTCATGGGCGTCCTG  44 243
LTC53_RS11625 2696823 .. 2696851 +  -8.2  -2.80816   CCGGGCCGCCATGCC       GCA-GCGTTGACCG GGC CGGTC-GCGCGTGC       TGTGATGCGTCCCGG  54 84
LTC53_RS11630 NONE
LTC53_RS11635 2698077 .. 2698108 + -19.4  -2.66249   GTCACTGCGAACGTG      CGCTGCGCTTCGCC ACGC GGCGCGGCGCAGCG       GTCTTCTTGGTCGCG  93 333
LTC53_RS11645 2699643 .. 2699661 + -11.6  -2.63301   CGCTGGAAACGACGA             CGCCGACG TTG CGCCGGCG             TCGTCTACCGCTCTC  61 200
LTC53_RS11675 2709706 .. 2709729 +  -8.2  -5.42259   TTTGATGCAAAAAGG          GCCGATTTTT TTAA AAAAAGCGGC           TTTTTTTGCAGCTCG 100 92
LTC53_RS11705 NONE
        asnS NONE
LTC53_RS11720 NONE
LTC53_RS11725 NONE
LTC53_RS11730 2720217 .. 2720241 +  -9.9  -4.07568   CGGACCCTCACCCCA          ACCCCTCTCGC GAG GGGAGAGGGGC          TTTTGCACGCGCCGC  78 162
         can NONE
LTC53_RS11785 NONE
LTC53_RS11790 NONE
        kynU 2731102 .. 2731121 + -12.8  -3.04515   TGAGCCGCCCCCTTC            TGCGCGGC CGCG GCCGCGCG             TCTTGCCGGATGTTT  67 38
LTC53_RS11800 2732538 .. 2732560 + -10.5  -3.14931   AGGAGCGGCTTCAGC           CGCGACCGG CATTC CCGGTAGCG           TTGGTCGCGGGTGAA  62 60
        sbcB NONE
LTC53_RS11810 2734919 .. 2734935 +  -2.9  -3.72893   CGGCTGAAGCCGCTC              CTACAAG GCG CTTGCGG              TTTGCTCGCAGGGTG  53 157
LTC53_RS11815 2735601 .. 2735620 +  -4.8  -3.33696   CCTGCTGCCCCTGTA            GGAGCGGC TTCA GCCGCGAC             TTGATTACACCGAAG  49 25
LTC53_RS11840 2743259 .. 2743271 +  -3.3  -3.53224   CTGACGCTGATCGAA                CCGGA TTA TCCGC                TTTGGGGCCAACCTG  49 290
LTC53_RS11850 2744633 .. 2744657 + -20.1  -3.50335   TGTTGCAACGAAAAA          GGGCTTGCGGA TGA TCCGCAAGCCC          TTGATATTTCTGGCG 100 122
LTC53_RS11900 2754138 .. 2754149 +  -7.2  -3.25539   CCGTACTGCTCGATG                CGGC GCAT GCCG                 TCTTCCTTGACGTTG  55 157
LTC53_RS11930 2761676 .. 2761698 +    -9  -2.78384   GCCGACCGTCTGCAG           CGCCTGCGCC AAG GCCTCAGGCG           TGTCCTCGCGCAACG  52 210
LTC53_RS11945 NONE
        nadC NONE
LTC53_RS11955 2765571 .. 2765589 +  -6.6  -3.21772   CGCAAGCGACCGAAC             CGCTGCCG GAG CGCTAGCG             TCTTATCGACCGCTT  53 9
LTC53_RS11960 2766508 .. 2766555 + -14.6  -2.78384   CGTCGGAACCGCTGG GCCGCGGCGGCGGGGTGTCGTC GCCC GGCGGCTCGCCGGCGCCGTGGA TGTCGTCCGGCAGCG  70 340
LTC53_RS12000 2772548 .. 2772571 +  -4.5  -2.78384   GGCCTGCGCGAGGGA          GCCGGCCCAG GTAGA CTAG-CCGGC          TCTCCTCAGCCACCC  43 43
        miaB NONE
LTC53_RS12010 NONE
        ybeY NONE
LTC53_RS12020 2776302 .. 2776327 + -14.7  -2.91681   GTCCCCACGCCCACC         GCCGCGGCCGCC ATC GGC-GTCGCGGC         TCTGTCCCATTGGCC  73 45
LTC53_RS12025 NONE
LTC53_RS12030 NONE
LTC53_RS12035 2779655 .. 2779673 +  -6.7  -3.25073   CCGATAGCGCTTCGG            GCGGTGCG TCAG CGCAC-GC             TGTTACTGTTCACGA  54 85
LTC53_RS12100 2797154 .. 2797174 +  -2.5   -4.8048   AAAGCAAAAGCCAAG            CATCCGG AGGCTGA CCCGATG            TTTTTCCTCTCCAGC  74 79
LTC53_RS12105 2798523 .. 2798533 +  -2.4  -2.80816   GTCCTGGTACAAGCT                 ACGC GAC GCGC                 TGTGGTGAGTGCGCC  40 7
LTC53_RS12110 NONE
LTC53_RS12130 2806484 .. 2806496 +  -9.1  -4.15565   TACAAAAAAGGGACT                GGGTC ACT GACCC                TTTTAAAATCATCGG  75 187
LTC53_RS12155 2812770 .. 2812795 +  -8.9  -3.09635   GGATTCGGAATTCGG         GCGCCGAGGCG CTTG CGCTTTGACGC          TTCCGTACTGCGCGT  56 159
LTC53_RS12160 2813193 .. 2813217 +  -7.7  -3.13403   GAAGCCGAGCGCTAA          CCAGCGCCGGC ACG GCCGCTGCTGA          TCTTCGTGCAGCAGG  54 26
LTC53_RS12165 2813678 .. 2813694 +  -2.2  -3.53012   GAGGTGCTCGCTTGC             GGCCGCC GTCC GG-GGTC              TTTCGCCCCGCCCGG  48 124
LTC53_RS12170 2814395 .. 2814420 +  -5.5  -5.76949   TTTGATGCAAAAAGG         GTCGATTTTTT TAAA AAAAAAGCGGC          TTTTTTTTGCAGCTC 100 157
LTC53_RS12185 NONE
         ald NONE
LTC53_RS12195 NONE
LTC53_RS12200 2821590 .. 2821602 +  -6.9  -3.68827   GCAGGGCCATCGTCC                GCGTG GAA CGCGC                TTTCCCTGGTCCCTG  61 115
LTC53_RS12205 2822848 .. 2822888 +  -8.8  -3.17051   GATGCTGCCCGATCC  GCGCCGCGCGCAGCTGCG GCGCA TGAAACTGCTGGCGGCGC  TGTTGCTGCTGGCCA  56 321
LTC53_RS12210 2824190 .. 2824208 +  -5.8  -3.09516   AGCGTGCGTTGCAAG             GCGCCTGC AGG GCCGTCGC             TTCAATCGTGAAAGC  49 104
LTC53_RS12215 NONE
LTC53_RS12220 2829812 .. 2829828 +  -3.5  -3.04144   GCCGCGCCACCGCCG              CGCGCAG CAG CCGCACG              TGTTCGCGCTGCAGA  43 344
LTC53_RS12250 2834758 .. 2834770 +  -4.7  -3.29461   CACGTGCGCGGTGAA                CGCGC AGG GCGGG                TTCTGCGCCAGGTTG  49 299
LTC53_RS12275 NONE
LTC53_RS12280 NONE
         nth 2840303 .. 2840315 +  -4.7  -3.28791   CACCGGCGCAGCGGA                GCGGC GAG GCCTC                TTGTGGGAGGGACGT  49 169
LTC53_RS12305 2844930 .. 2844969 +  -5.1  -3.70149   GTGCGCGGCGCAGGC CGTG-CGCTGC-ATCGGCGC CAT GCTCC-ATCGCAGCGTCATG TTTCCGTCATGTACC  57 59
        pstS 2846117 .. 2846140 + -19.6  -5.57396   CCGATTGTTACCCGA          CGCGGACCCC TCAC GGGGTCCGCG           TTTTTTATTCCTTCT 100 60
        pstS 2847759 .. 2847780 +  -3.6  -3.05294   CGCTGCAGTCGGCAG           CG-GGCGCC AGATC GGCACCACG           TATTCCGGACTTTCG  44 123
        pstC NONE
        pstA NONE
        pstB NONE
        phoU 2851449 .. 2851468 + -16.4  -4.25104   CCGCGACGCACAGCT            GGCCCCGC TTCG GCGGGGCC             TTTTCGTAGACGACG 100 103
LTC53_RS12340 NONE
LTC53_RS12345 NONE
LTC53_RS12350 2853823 .. 2853845 +  -5.4  -2.80994   CCCACGCGCGCCCTG           TCGCGGCGGA GGT TTAGCCGCGC           TCTGCTACCCTTGCC  46 300
         rnt 2854522 .. 2854558 + -10.1  -3.04792   AAGCCCATCGCCACC   GCGCCCG-C-GCTGCGG CCTTA CCGCGTCTGGCGGGCGC   TATTGGCGCTGCTGG  60 40
LTC53_RS12360 NONE
LTC53_RS12365 2855536 .. 2855560 +  -3.5  -3.29144   CGCCACGGAGGGTAC         CTGCCGAAGC GCAGCA GCT-CGGCCG          TTGTCAGCCAGCTCC  47 48
LTC53_RS12395 2861486 .. 2861504 +  -2.3  -3.14344   AGAATTCTCGGACTG             TATCGCC CAGGT GGCGGAA             TTGGTAGACGCACTA  42 136
LTC53_RS12400 2861599 .. 2861614 +    -6  -5.81412   CAAGCAGAAAAAAAA              ACCCGC TTCG GCGGGA               TTTTTTTTGCCTGGC 100 48
LTC53_RS12410 2862734 .. 2862788 + -23.8  -3.32268   GGCCCCCCTGTAGGA GCGGCTTCAGCCGCGACAGGTA CCTTCGTTAAA TGGCTGTCGCGGCTGAAGCCGC TTCTACAGATGCTTC 100 62
LTC53_RS12440 NONE
        parC 2872115 .. 2872132 + -12.7  -5.81412   ACAGCAAACAGCAAA             TCGGCCC TTTC GGGCCGA              TTTTTTTTGCCTCGC 100 81
LTC53_RS12455 2875348 .. 2875379 +  -3.4  -3.05384   CTTGTCGCGCCAGCG      TCGCGCGGCGCCTG CGGC CGATCGCCGCGCCC       TTCCCTCCCCCAAGC  42 77
LTC53_RS12460 2876762 .. 2876797 +  -3.3  -3.28712   GTGCGGTAGTAATAG    GC-TTCCTTGGTCAGC GGCGG GTTGACCGGGAAACGC    TTGTCAGACGCGGCA  47 337
LTC53_RS12470 2880415 .. 2880435 + -11.1  -2.78463   TGTAGAACGGCTCGC            CGCTGCGGT GCC AGCGCAGCG            TGTAGTCCAGGCCGT  59 388
LTC53_RS12480 2882714 .. 2882728 +  -3.4  -4.95547   ACAGTTTCCACTCGG               CCTCGG ACC CCGGCG               TTTTCTTGTTGTCCG  82 198
LTC53_RS12505 NONE
LTC53_RS12510 NONE
LTC53_RS12515 NONE
LTC53_RS12520 2892435 .. 2892457 +  -3.4  -2.73364   TAAAGTTGCCTCGCC           GGACGC CGTTATCTGTC GCGTCC           TCCTTGGAATGCCAC  40 66
LTC53_RS12525 2892779 .. 2892791 +  -3.3  -3.35679   CCAGGATGCGCGCTA                CGCCA CGG TCGCG                TTCTAAGTGGGCGGC  48 7
LTC53_RS12530 2893650 .. 2893661 +  -5.8  -3.06796   GCCCGTGCCGGGGTG                CTCC GCGA GGAG                 TTCGGTCACGTAAGG  47 164
        rpsB 2894638 .. 2894679 + -15.9  -3.54424   GCAGTCGCCACCCGG CGCGCGCT-GC-GCGCCCG GGTCCG CGGGCGCCGCAAGCGCCCG TTTCCGAGAATACCG  83 71
         tsf 2895640 .. 2895657 +  -9.8  -6.07627   CCCATCCGGAAAAAA             GCCGCG CCTGGT CGCGGC              TTTTTTTTTGCCGGT 100 47
LTC53_RS12545 2897232 .. 2897248 +  -6.5  -3.28712   CGTTCCGCAACACCC              TGGCCTG AAC CGGGTCA              TTGTGCGCGCGCGGC  53 18
        pyrH 2898124 .. 2898142 +  -4.4  -3.04398   GGAAGTCGGTAAAGC             CTCAGCCC GTG GCGCTGCG             CTTTTCCGGGCCCCG  45 85
         frr 2898777 .. 2898797 +    -4  -2.52543   GAACTGATGGCGGTC           TGAGCCTGCG CCT CGC-GGC-CA           TGCCTTCGGACCCCT  40 23
        uppS NONE
LTC53_RS12565 NONE
         dxr 2901574 .. 2901600 +  -2.8  -3.74872   ATGTCTGACACGCAC         GCCCCTATGAGC CAC GCGCATGGGTGA         TTTCATCGGGTCCGT  53 33
        rseP 2902976 .. 2902992 +  -2.1  -3.01712   CGATGCTGATCCACT              CGACCCC GCT GTCGTCG              TCTTACGCCGGCGCC  41 44
        bamA 2905439 .. 2905487 + -25.4  -3.05596   CGCCGCCAGGGCGTT GCCCTGGCGGCCCCAGGCTCCCGC GTA GCGGGAACCTGG-GCC-CCGGGGC TTAGCTCGCCAAATC 100 54
        lpxD NONE
        fabZ NONE
        lpxA NONE
        lpxB NONE
LTC53_RS12605 NONE
        dnaE 2913777 .. 2913797 +    -4  -3.57144   TCGGGACCCGTAAGA           G-CAAGGGC CGTT GCCTTTGAC            TTTCCGAGTCCCGAG  51 59
LTC53_RS12615 NONE
LTC53_RS12620 2915668 .. 2915713 +  -5.9  -3.06501   TTGCGCCCCAACAGC GGTGCG-CGCGACTTCTGGCCG CAT CGGCCATCAGGGGCGACGCGCA TTCCCTGAAGCTCTA  49 45
LTC53_RS12630 NONE
        phaZ 2918348 .. 2918386 + -10.9  -2.90392   GGCCGGCTGAGCGGC  GTCCCGCTCGCGGCCGGC GCTT GCCGGCCGC-AGCGTCAA   TGTCATTGCGCCGTG  61 31
LTC53_RS12645 NONE
LTC53_RS12650 2921993 .. 2922035 + -10.5  -3.30159   ATAGGCGTCCACATC GATCTGCGCCAACGCC-TGC AACA GCTCGGCGTTGGCCCAGGCC TTGTAGGCGAATTGC  63 495
LTC53_RS12670 2923308 .. 2923324 +  -6.5  -3.13475   TGCTGCGCCGCGTCC              TGGCTGG CGG CCAGCAA              TTGCGTATCGAGTTC  50 388
LTC53_RS12680 2925500 .. 2925523 +  -8.2  -2.64651   CGATCCTAGGCGACC          GCCTGC-TGTT GGC AACGCGCAGGC          TCCCTTTCCGCCCTT  52 262
LTC53_RS12685 2926013 .. 2926032 +   -10  -2.94695   CAAGCTGAAGAAAGC            CCTCGCCCG CGC CGGGC-AGG            TCTGATTCGTGCTGG  60 1
LTC53_RS12690 2926653 .. 2926664 +  -2.2  -2.76815   GAGCAGGATGGAAAA                GTCG TGGT TGAC                 CTTGTTGACCCCCAT  38 149
LTC53_RS12695 2927100 .. 2927121 +  -4.3  -2.54193   TCACCCCCTTGCGGG           CGATGCGTG GAGT CACCCCTCG            TCGCTTCAGGTGGTC  42 233
LTC53_RS12710 2930863 .. 2930905 +  -4.2  -3.30771   TTGCTTTTCGAACTC TACCGGA-GACAGCCCG TTGTTGTGTC CGTGCTGTCGTCTGGTG TTGTAGAACATCTCG  47 429
LTC53_RS12725 2935384 .. 2935396 +  -2.6  -3.53444   ACAATCCTGGCAACC                CTCG ACTAC CGGG                TTTGAGGCGCAGTGG  48 354
LTC53_RS12765 2942619 .. 2942630 +  -5.8  -5.00616   CCGGCGCATGTCGGC                GTCG GATG CGAC                 TTTTTTCAAGAGGAC  85 191
        kdgT 2943683 .. 2943697 +  -3.4  -3.53444   CGCAAAAACCGCCGT               TCGCCG CGT CGCCGG               TTTACGCGACAATAG  49 86
LTC53_RS12775 2944666 .. 2944720 + -12.2  -3.07816   AACGCGCTGGAGTGA GCGCGCCGGCGGCGCGGTT-CATTCCG CCAG CGAGACGCAATCGCG--GCCGGCGCGC TTGGCTCGGTACAGC  67 26
LTC53_RS12795 NONE
LTC53_RS12800 2950065 .. 2950088 +   -11  -3.92373   ACTGAGTGCAGCCGC          CGCTGCGCCGC GAT GTGG-GCAGCG          TTTGTCCATCGCCTC  79 36
LTC53_RS12805 2950525 .. 2950554 + -20.9  -3.33696   TCAGGCAACGATTTT       TTGTGGGAGCGAC TTCA GTCGCTCCCACAA        TTGCTTCGCCAAGCG 100 149
LTC53_RS12820 NONE
LTC53_RS12825 2954195 .. 2954214 + -16.4  -3.43492   GCGCTCCCCTTGGAT            GGGCCGCC TTAG GGCGGCCC             TTGTGATGGGTCTAG  85 124
LTC53_RS12845 NONE
LTC53_RS12850 2958636 .. 2958675 + -14.3  -4.37092   TCTCCCGGGGGAGAG  AGGGGCCGTGGTCCC TTCTCCCACC GGGACCATGGCCCCC   TTTTCTGGAGAAGGT 100 96
LTC53_RS12855 2960075 .. 2960110 +  -2.3  -2.78816   CGGCACTGCGCTGAG    CGCCGCGGCGCTGCG AAAAAC CCTAGCGGCAAGGCG     TGTCGTGAGCGATGG  38 27
LTC53_RS12860 NONE
LTC53_RS12865 2962884 .. 2962901 + -14.1   -4.0031   GGGCTGCAAAAAAAA             CGCGGCG CAAG CGCCGCG              TTCTTTCGTCCCGCT  84 95
LTC53_RS12880 2965901 .. 2965922 + -17.3  -5.14563   TCCCGAGCGTCAGTG           GAGGCCGCC TTCG GGCGGCCTC            TTTTTTGATGGCGCC 100 52
LTC53_RS12890 2968213 .. 2968233 +  -7.5  -3.18912   CAGCGCAGAGGTGAG            TTCGCGCGT GCA GCGTGCGAG            TTCATCGATGCGTCC  54 64
LTC53_RS12895 2969277 .. 2969292 +  -2.4  -2.93853   GAAGCTGGCGAAGGA              GGTGAC CGAT GACGCC               GTTTAATTACCAGCG  40 4
LTC53_RS12900 NONE
LTC53_RS12905 2972898 .. 2972937 +  -2.6  -2.71731   TGCAAGTGCGCAGCC  TCCAGCGCCGGCTGATCG CAGC CGAGCACCAGGCTGTGGG   TGATTGCCCCATCCC  39 419
LTC53_RS12920 2975829 .. 2975843 +   -10  -2.70932   ATCGCCACCTGCGCG               CTGGCA CCA TGCCAG               TGCTTGACCCCCGGC  56 351
LTC53_RS12930 NONE
LTC53_RS12935 2979241 .. 2979254 +  -9.5  -3.23447   AAGCATTGGTCGCGC               GCCGC CGGC GCGGC                TATTCTCGGCCTTGC  61 248
LTC53_RS12940 2981028 .. 2981053 + -11.1  -3.05844   CAGCGCGCGGTACAC         G-GTGGGCGGCG CAT CGGCGCCCACGC         TCTTGCCCTCGCGCA  62 401
LTC53_RS12975 2987768 .. 2987799 +   -26  -3.01712   GACCTCGGACAGGCA      CAGCGCAGTGCCGG CACG CCGGCACTGCGCTG       TCTTCAACCAAACAC 100 75
        rlmJ 2990336 .. 2990374 +  -7.3  -3.53012   CGTCCAGCGGCCGCC  CCAGCGCCTGC-GCGAAG TGCA CGTCGCTGCGGCCGATGG   TTTCCGCGCCGACAG  58 376
LTC53_RS13005 2992701 .. 2992720 +  -3.4  -2.50113   CTCCGAGTCCCGACT            CTCCGGTC CCCG GTCCCGAG             CTTGCTAGACTAGTC  39 86
         mfd 2996518 .. 2996536 + -13.1  -5.31275   CGAACGCTCCGAAAA             CGGCCGG CCTCC CCGGCCG             TTTTTTGTCGTGCCG 100 128
LTC53_RS13015 NONE
LTC53_RS13020 2999368 .. 2999425 + -13.4  -3.89346   GGCGTTGCTGCTGCC GCTCGCGCAGGGCACCG-CGCTGGCC CTGGTCGC GGCC-GCGACGCTGGCCTGCGCCGGC TTTCTGGGCTGGGCC  83 189
LTC53_RS13030 3003777 .. 3003793 +  -4.3  -3.78775   ACTGAACGCCCGCAT              TGCGGAC GCC GCTCGCA              TTTCATCCTCAAGAG  58 73
LTC53_RS13035 NONE
LTC53_RS13040 3006322 .. 3006344 +  -6.8  -2.57132   CTGAGTTTCATGCGT           GGCGCAGCGC GCC GCGTCCCGCC           CTTGTCCAACGACGG  47 37
LTC53_RS13045 NONE
LTC53_RS13050 3008442 .. 3008452 +  -2.4  -3.04398   ACCGCAAGCCATGAA                 CAGC GCT GCCG                 GTTTTCAAAGGAACC  41 27
LTC53_RS13055 3009569 .. 3009617 +  -8.5  -4.07687   GGCGCTCCACGCCGT GCGGGGCGCCTGCCTTTGCCGCG CTG CGCGGCGGCGGGCGGCGTTCGCC TTTTCAAACAGAACT  72 43
LTC53_RS13060 3010620 .. 3010630 +  -2.4  -4.07568   TGGCGAAGAAGCGCT                 CGGC GAT GGCG                 TTTTCCAAGCAGCGG  58 163
LTC53_RS13070 NONE
LTC53_RS13075 3015714 .. 3015732 +  -5.8  -3.63569   GGCCTTGCCCTGGTT             GGCCACCG CCT CGGCCGCC             TTCTTCGCCGCTTCC  57 369
         nfi 3017832 .. 3017845 +  -5.2  -2.91274   TCCCAATTGTCAAGT               GCCG CCCGCT CGGC                TATGGTTCCGATGGC  46 399
LTC53_RS13095 3018475 .. 3018504 +  -7.1  -3.00946   CGTGCGCACGACCAG       CGTGGCGCTGGATC GCT GAGCCAG-GCAACG       TCCTTTGTAGGAGCA  51 7
LTC53_RS13105 NONE
LTC53_RS13110 3021652 .. 3021664 +  -7.7  -3.68222   CTTGCGCATGGCGGC                GCAGA TGA TCTGC                TTGTTGGCCTTGCCA  64 269
LTC53_RS13155 3034158 .. 3034199 + -13.7  -3.57561   CACCGTCGTCGCTAC GCGCGAGGCGCGGCCCGA GCGTGCG TCGGGCCGCGGATCG-GC TTTCGCGGCTTGCAG  78 48
LTC53_RS13165 3036481 .. 3036533 + -13.4  -2.82834   GGAAGAGGCGCAGCG GCAGT-TGATGGCGGCCGATGCCGGG ATC CCCGGCG-CGGACGCCTTCGCGTTGC TGTCCTACTACGGTG  69 311
LTC53_RS13170 3037570 .. 3037607 + -11.2  -3.28712   GCCGCGCTGAGTCCT  GCCGCCGGC-AACGGCGC TGCA GCGCCGCCCGCC-GCGGC   TTCTCGCAGGCAGCC  66 31
LTC53_RS13180 3039922 .. 3039935 +  -9.5  -3.58162   TGACGAACTGCCAGT               CGGCG CCGG CGCCG                TTCATTTCCTGCTCG  67 389
LTC53_RS13210 3048096 .. 3048148 +  -7.4  -3.41051   GCGCACCGGCGATGC CGCCGACCACCGTGGCCGCG-CTGC GCCC GCCGTCGCTGCCGCGATAGCCGCCG TTGTAATAGCCGTCG  58 463
LTC53_RS13225 3049892 .. 3049913 + -15.9  -5.41143   GGCAAGCACACCTGA           CGAGACGGC CCTG GCCGTCTCG            TTTTTTTGCGCGCTC 100 59
LTC53_RS13230 NONE
LTC53_RS13235 NONE
LTC53_RS13240 3051808 .. 3051822 +  -5.6  -2.67803   GCTTGCCGACCTTGC               GCACCG TCG CGCTGC               TCGCTTTCCTCGCCG  45 162
LTC53_RS13245 3052646 .. 3052665 + -16.4  -4.05446   CAGTCCTAAAAAAAA            CGGCGGCC AACA GGCCGCCG             TTTCTCGTTGCGCAC  95 289
LTC53_RS13260 NONE
        sufB 3055880 .. 3055907 +  -4.8   -2.8474   TGCTGGAAGTGTCGC        TGGAAGGCTCGG TCGG CTGATCCTTACA         TCCTTCTCCCTCGGG  44 6
        sufC NONE
        sufD NONE
LTC53_RS13280 NONE
LTC53_RS13285 NONE
LTC53_RS13290 3060384 .. 3060397 +  -3.9  -3.53012   CACCACGCAATCCCC               TTTCT TTTC AGAAA                TTTAGAGAAAGAAAA  51 56
LTC53_RS13295 NONE
LTC53_RS13300 3063745 .. 3063771 +  -5.1  -3.53012   GAACACGGTCGGCGG        CGCTGC-GTTGC TGTT GCGACCGCGGTG         TTTCCCGCGCCGCGC  54 51
LTC53_RS13305 NONE
LTC53_RS13310 NONE
LTC53_RS13315 NONE
LTC53_RS13320 NONE
LTC53_RS13325 3068544 .. 3068564 +  -4.6  -3.84825   TACTGAGCGCTCCCG           GCGC-GGCG ACGG CCCCAGCGC            TTTGCTGTGCCTGCA  58 35
LTC53_RS13330 3069502 .. 3069536 +  -4.9  -3.05384   CGGCTGAGCACGTTG    CCG-GGCTGATCGAGG AACA CCGCCATCAGCCGCAG     TTCGCTGGGCGACAA  46 511
LTC53_RS13350 NONE
LTC53_RS13355 3073730 .. 3073768 +  -5.1  -3.63627   AAACGCTGAGCCGCA  C-CGCTGCGTCGCCACGG CTCG CCATGCCGACGCCGCACG   TTTACGCTGTGCGGC  57 32
LTC53_RS13360 3074827 .. 3074840 +  -5.2  -2.73875   AACGCGCGGCGGCCG               GCGC ATGAAG GCGC                TGATCTTCGCCGCCG  45 18
LTC53_RS13365 3075609 .. 3075654 +  -7.4  -4.09685   ATCGAATCCGGTTTG GC-AAGCCTGCCGCCAGCCGC TGCAT GCGGATGCCGGCGAGCTCAGC TTTTGCCGAGTCCCG  69 78
        purM NONE
LTC53_RS13390 NONE
LTC53_RS13395 NONE
        purN NONE
LTC53_RS13405 NONE
LTC53_RS13410 3083625 .. 3083635 +  -2.4  -3.84451   CATGGAGCATCTCAA                 GCAC GAC GCGC                 TTTGCGTTTCACGGA  56 496
LTC53_RS13420 3084484 .. 3084503 + -16.4  -5.28942   ATCCATCACGAAAAA            GGCGGGCC GCAC GGCCCGCC             TTTTTCTTTCAACTG 100 47
LTC53_RS13440 NONE
LTC53_RS13445 NONE
        lptC NONE
        lptA NONE
        lptB 3090024 .. 3090041 +  -8.4  -3.66178   AGGCTCTGACCGCGC             GGGCGT TGCGCC ACGCCC              TTTCCCGTTCGGCAC  65 32
LTC53_RS13465 NONE
        raiA NONE
LTC53_RS13475 NONE
        hprK NONE
        rapZ 3094299 .. 3094331 +  -4.5  -3.05816   GAGTCCCGAGTCCCG      AGTCCCGGGTCCCGG GTC CCGGGTCCCGAACCA      TTCCCTGCGCCCTGC  45 117
LTC53_RS13490 NONE
LTC53_RS13495 NONE
        ptsP 3096906 .. 3096921 +  -4.6  -3.28708   CGAATCCCCCATCGC              CATCGG CAAC CCGCTG               TTGCTGTCGCCTTTC  49 111
        mgtE 3098421 .. 3098450 +  -9.2  -2.90763   CTGTAGCCCGATCCA       GGTGGCCTGCGC ATTGCC GCGCAGCGCACC        TGTATCGGCTGTCCC  56 35
LTC53_RS13510 3099555 .. 3099565 +  -4.6  -3.05596   CCACCAACGGCAGCA                 TCCG GAC CGGG                 TTGCGTCAGACGCTG  45 118
LTC53_RS13515 3100303 .. 3100321 +    -3  -3.49419   GTCCCGAGTCCCCCA             GCTTGCTA TCC TTGCCAGC             CTTTTTCTCCCACGC  49 141
LTC53_RS13520 3101696 .. 3101731 +  -3.8  -4.52589   GCTGCTGTGCGCACT    GGGCGCGCGGCTGTTGC TGG GCTG-AGCCGTGCCCGC    TTTTGTGTAGGAGCG  70 1
LTC53_RS13530 3104832 .. 3104862 + -11.1  -4.28994   CTCCATCGACCGCGC       CGCGGCGCTGG CCTCTTCCA CCAGGGCCGCG       TTTTGCTGGGTGCTC  85 434
LTC53_RS13565 NONE
LTC53_RS13570 3115138 .. 3115148 +  -2.4  -4.58395   CGGGAGAAGGAACAG                 GCAC ATG GCGC                 TTTTTGGGCGCTCAG  70 259
LTC53_RS13585 3118551 .. 3118576 +  -3.9  -3.78242   GTCAACCAAATGGAT         GCATCGACCAG ATTG CTGCTTGCTGC          TTGTGTTGTCGGTTT  57 325
LTC53_RS13590 3119691 .. 3119723 +  -7.8  -3.74361   GCCGCACTGCCGCCA     CGCGACGCAGCCGCTA CCA TAG-GGCTCC-TCGCG     TTCTTGGTGCCTGTC  63 125
        proC NONE
LTC53_RS13600 3121057 .. 3121069 +  -4.7  -3.57144   GCACGTTCTAGCGCG                CCAGC GTT GCCGG                TTTGCCGCTGCGCGC  52 30
LTC53_RS13610 3123562 .. 3123606 +   -12  -3.15544   CTTGGGCCGCCGCGG CAGCGCTGCGGCCTGCGCCGC GATC GCGTC-CAGGCCGCGCTGCAG TTCATCGGCATAGGC  68 429
LTC53_RS13630 NONE
        aroB 3127312 .. 3127365 +    -3  -2.61728   GGCCGGTCAGGCTGA TGCGCGGGAACAACG-CC-G-CCCGCG CCG CGCCGATCTGGGCGTTGACCGCGCGCA GTTCGTATTCGGCCT  38 503
LTC53_RS13655 NONE
        hemE 3134932 .. 3134946 +    -7  -2.62933   CTGCACGGCGCCTCG               ACGCGC TCT GCGCGA               TCCTGTCCGCCCTTC  47 307
        mdtD 3136795 .. 3136809 +    -7  -3.05384   CAAGGCCACGTCGAA               GCGGGC GCC GGCCGC               TTCGGTCAGCGCCGC  52 407
LTC53_RS13680 NONE
LTC53_RS13685 NONE
LTC53_RS13690 3145932 .. 3145943 +  -7.2  -5.81412   GGCGGATTCCCTCCT                CGGG TCCG CCCG                 TTTTTTTTGCCTGGA 100 77
LTC53_RS13700 3147786 .. 3147824 + -11.1   -4.1822   CCTGCCTGGATGACA  GGCCT-TGCGGCTGTCG CGATCGC CGAC-GCCGCGCAGGCC  TTTGTTGCGATGCGG  89 131
LTC53_RS13705 3151343 .. 3151358 +  -3.9  -3.31144   CTATCGGGTGATCGC              GCCGG ACCAGA TCGGC               TTCTGCAAGTCGAGC  47 457
LTC53_RS13730 3156773 .. 3156787 +  -5.6  -3.12803   GTGCCCGGCGGCGCG               GCGCTA TAA TCGCGC               TCTTCCCTGTCGCTG  49 17
LTC53_RS13735 NONE
LTC53_RS13740 3159244 .. 3159254 +  -2.4  -2.64933   TTCGCGCCCCGTGCA                 CGCG CAC CGCC                 TACTATGGCTGGATG  38 64
LTC53_RS13745 3161282 .. 3161294 +  -3.3  -3.41359   CTCGGAAAATCAAAA                GCTCA TAT TGCGC                TCTTGCTTTTCCGAG  48 61
LTC53_RS13765 3164854 .. 3164872 +  -2.2  -3.95584   TCCTCTAGCATCATT             GCCCCTGC CCG GCGGGAAC             TTTAGTTCCTGCCCG  56 91
LTC53_RS13770 3165801 .. 3165814 +  -9.5  -5.67063   TTTTTGTTGAAAAAA               GCGCC CATA GGCGC                TTTTTTTGTGATGAA 100 61
LTC53_RS13775 3169000 .. 3169025 + -14.7   -5.0538   ATCTGATCGTCTAAA         GCAACGGCCCC GCAA GGGGCCGTTTC          TTTTTTACGGTCCAA 100 56
LTC53_RS13780 NONE
LTC53_RS13785 NONE
LTC53_RS20050 3171687 .. 3171712 + -19.1  -2.59431   ACCCCCTGATCGAAG         CACAAGGCGCC GCAC GGCGCCTTGTG          TCGCTTCTGAGCGAA  87 303
LTC53_RS13795 NONE
LTC53_RS13800 3176097 .. 3176119 + -14.9  -3.34013   CCCGTCGGCGCAGAG           CGCGACAGC TGCGC GCTGTCGCG           TTGCTTGCACCGCTG  78 74
LTC53_RS13870 3192223 .. 3192234 +  -7.2   -3.4072   CGCAGGTCGAGCTGC                GCGG CATG CCGC                 TTCTGGTACAGGGTG  58 400
LTC53_RS13880 3194481 .. 3194496 + -11.8  -4.04318   ATGGATGCAGCGGAA              GGCGGC GCAA GCCGCC               TTTCTGCTGTCTGCG  82 57
LTC53_RS13910 3198835 .. 3198858 +  -8.2  -5.78622   TTTGATGCAAAAAGG          GCCGATTTTT TAAA AAAAAGCGGC           TTTTTTTTCAGCTCC 100 69
        bioA NONE
LTC53_RS13955 3205793 .. 3205806 +  -3.8  -5.40072   TCCCCGGTAAAACAG               CGCT TTTCTT AGCG                TTTTTTTAACCGCGA  90 122
LTC53_RS13960 3209249 .. 3209263 + -12.8  -3.65046   ATCTGCTCCAATGCC               GGGCGC ATC GCGCCC               TTGTTCAAGTAGCGC  74 482
LTC53_RS13970 3210740 .. 3210754 +   -10  -3.41738   TCCCGCCCGCGCACC               GGCATG AAA CATGCC               TCTCTTTGTTGGACG  65 254
LTC53_RS13975 3213695 .. 3213728 + -16.7  -5.40072   CTGATGTAGCACTGG     CGGCGCGCCACCG ACTCTCCA CGGTGGCGCGCCC      TTTTTTTGCCCGGCG 100 37
LTC53_RS13980 NONE
LTC53_RS13985 NONE
LTC53_RS13990 NONE
LTC53_RS13995 NONE
LTC53_RS14000 3224523 .. 3224562 +  -5.6  -2.87211   CGCGTTTTCGATCCA  GGGCACG-GTGCCCATCGC GCG GTGATCCGCACATGCGCCC  TGTGTAGGAGCGGCT  46 1
LTC53_RS14005 NONE
LTC53_RS14010 NONE
LTC53_RS14015 NONE
LTC53_RS14020 NONE
LTC53_RS14025 3233859 .. 3233885 + -17.3  -3.80625   TTGTCTACCAATTAA        GGCCGC-CGGCG GTTT CGCCGAGCGGCC         TTTAACTTGTGACGG  95 95
LTC53_RS14030 3234689 .. 3234737 + -16.2  -3.30441   TTCCGGCGTGAACAA CGGGGCCAGAGGAAATATCT AATTCAAGC ACATATTTCCTCCGGCCCCG TTGTCGGCAATCATC  82 196
LTC53_RS14035 3235421 .. 3235471 +  -5.5  -3.21395   CCCGCAATTCCAACA GCGGGGTCAGAGGAAACAT CCATTTTAAGCAC ATATTTCCTCTACCCCCGC TATTGTACACCCCAT  49 71
LTC53_RS14040 3236745 .. 3236761 +  -6.5  -3.91897   CAACTCCTGCTGTCT              CATCGAC AGA GACGATG              TTTGTAAATGCCGCC  64 247
LTC53_RS14045 NONE
LTC53_RS14050 3238254 .. 3238268 +   -10  -3.53343   TTGAATCAAACCTCT               CCTCTG GCG CAGAGG               TTTCCCCAGACCATT  65 98
LTC53_RS14060 3239478 .. 3239504 + -10.1  -3.03159   GACATGGCCGTGTTC        CAGCGCACGTCG TCTT CGACG-GCGCCG         TGTTGCACCGCTTCA  60 373
        tssJ 3260797 .. 3260814 +  -6.9  -2.68434   GCCGCTGCGCGCTAG             CGCCTCC CTGC GGACGCG              TGCTGTAGTATCACG  48 26
        tssK NONE
        icmH NONE
LTC53_RS14160 NONE
LTC53_RS14165 NONE
LTC53_RS14170 3268587 .. 3268607 +  -3.2  -2.79501   GGCCGAACCGGACAC           CGTGCGCCA TGCC TTGCGC-CG            TGTGGTGCCGCTGTG  40 101
LTC53_RS14175 NONE
LTC53_RS14180 NONE
LTC53_RS14185 NONE
LTC53_RS14190 3273013 .. 3273029 +  -2.2  -3.57792   ACAAGGGAAAATCAA              GACACT GGAAA AGTGAC              TTTAGAAATGCCTGA  48 10
LTC53_RS14195 NONE
LTC53_RS14200 NONE
LTC53_RS14205 3277135 .. 3277156 + -11.5  -3.85698   CCGCGCCAGCGGCCG           GCCGGGGCA TGGA TGACCCGGC            TTTGTGCGCAGCGGG  77 330
LTC53_RS14215 NONE
LTC53_RS14220 3281127 .. 3281154 +  -8.4  -4.25283   TGGCTGTGAATCGTC        TCCACCGTCGGCT GGA AGCCTGCGG-GGA        TTTTGCTGGCGAAGT  78 257
        tssA 3295502 .. 3295523 +  -7.1  -3.28791   GATACGCCGGTTGCG           CGCACGCCC GTCC GGGCTGGCG            TTATCGGCCACCGGT  55 111
LTC53_RS14335 3305047 .. 3305076 +  -9.9  -2.78018   ATGCGGCCCAGCGGA       TCGCGGCGCAGCCG GTA CGCCT-CGCCGCGC       TGGTTGATCACCGCT  57 355
LTC53_RS20060 3316500 .. 3316547 + -19.2  -4.07687   TGCCAGTTCGCCGTC CGTCGGCATGCCAGGATCCG-GG AGG CCGCCGATCCTGGTACGCCGGCG TTTTACGCCCCAGCT 100 482
LTC53_RS14385 3322998 .. 3323008 +  -2.4  -3.33261   ACTAAGGTCTCTGGT                 CCCG ACG CGGC                 TTCTCCAAATTCGCA  44 294
LTC53_RS14410 NONE
LTC53_RS20065 3328582 .. 3328596 +  -9.2  -2.72344   AAATGTCCACTGCAA               GCGGGC ATT GCCTGC               TGCTTGACCGTGCGA  55 197
LTC53_RS14440 3335470 .. 3335489 + -11.4  -2.60244   GAGCGCAACTGAACC            GCC-CCGGG AAT CCCGGAGGC            TCCATTACTTGAGAA  61 508
        moaB NONE
LTC53_RS14460 NONE
        ppk2 3338981 .. 3339000 +  -2.8  -2.58418   GACTCGATGGTGCAG            CATGCAACC GAC GGT-GCACG            GGTTTTCTGTAGGAG  39 243
        wrbA NONE
LTC53_RS14490 3342393 .. 3342420 +  -7.7  -2.79501   CCGGCGGCGACAGGC       CCTGAGC-GGCCG GCGC CGGCCTGC-CGGG        TATCATGGCGGTCTC  51 21
LTC53_RS14495 NONE
LTC53_RS14500 3343478 .. 3343491 +  -2.3  -2.52464   GTCACGCCCACCCCG               GCCAC GGCG GTGAC                TGCCTTCACCCGCAC  37 60
LTC53_RS14525 3349584 .. 3349624 +  -4.4  -3.22475   CAATTCGCTGACCAG CGCGCCGGCCGCCTCGGCG CCGT CGCCGTA-CAGCATGCGCG  TGTTGTCGGCGTAGA  45 144
LTC53_RS14540 NONE
LTC53_RS14545 NONE
LTC53_RS14550 3353309 .. 3353354 + -13.2  -3.01712   GTTGGCTCCCGCAGG TCGCCTGCGGCTTGCAGGCC AGGTAG GGCCGGCAAGCTGCGGGGAA TGTTGCGAGAAAACG  70 348
LTC53_RS14570 NONE
LTC53_RS14575 3361100 .. 3361127 +  -9.7   -2.9155   CTACACTGAGGCACA        GCCGGGCCGCG CGCTGC CGCGGCCGCGC         TATCCTCTTCCGAAC  56 92
LTC53_RS14580 NONE
LTC53_RS14585 3362496 .. 3362533 +    -2  -2.55015   AAGCTGCCTTCACAT  CGG-GCTGAGCGCAGGCT GCGC AGTCT-CGATCATCGCCG   TCCGTTCAATGCCCT  38 18
LTC53_RS14590 3363771 .. 3363796 +  -4.5  -4.11216   CTCAGACGAAGGCGT         CGGTGGCGCGC ACCA GGGCGTCGACG          TTTTCAGCCTCGAAC  62 333
LTC53_RS14615 3370550 .. 3370567 + -14.1  -5.24129   CCGTGCACGGAAAAA             GCCCCGG CCCG CCGGGGC              TTTTTTGTACGCCGC 100 76
LTC53_RS14620 3371321 .. 3371354 + -15.3  -3.53811   GGAAGCTGATCTTCA     ACTCATGGCGGCGCC GACA GGTGCCGTCATGAGC      TTTCAGCCGGCTCGC  83 71
LTC53_RS14630 3375481 .. 3375500 +    -7  -4.07568   GCCGAGCAGGCCGAA            CGCGCGGT CGCG GCCGCGCA             TTTTCCGCCGCACGG  67 477
LTC53_RS14640 NONE
LTC53_RS14645 NONE
LTC53_RS14650 3381179 .. 3381191 +  -2.6  -3.09635   AGCGCTCGACGGCGA                CGTC AAGGC GGCG                TTCGCTGATGCGCGT  42 5
LTC53_RS14655 NONE
LTC53_RS14660 NONE
LTC53_RS14665 NONE
LTC53_RS14670 3386031 .. 3386049 +  -6.7  -2.80816   AGCGCCTGGCGCAGG             TCGGCGA GCAGG TCGTCGA             TGTGCTCGATGCCGA  46 251
LTC53_RS14695 3391666 .. 3391693 + -17.8  -2.77899   CAGCATGATGCCTGT        TGTGGGGGCGAC TGAA GTCGCTCCCACA         TGATTCCTGCGGCCA  85 99
LTC53_RS14725 3399327 .. 3399372 +  -6.6  -3.28712   GCTACACCTTCTGAC CGGCGCGCCCGCACGGCG AGGTGCAGGG CGCCGAGCGCGTTCCCCG TTGTGCGCAAACCCG  53 27
LTC53_RS14730 3400410 .. 3400447 +  -5.6  -3.15366   GAAGATGGGAAATGG   GTAAAAGCACGA-GCCG CGCGT CGGCCTCCCGCTTTTGC   TCTTCCAATTTTCCA  49 46
        otsB 3401248 .. 3401264 +  -4.4  -2.70932   GCGTCCACGCCTGGT             TG-CGCG ACAA CGCGGCA              TGATTCCGGCGCCCC  43 6
LTC53_RS14740 NONE
        otsA 3404692 .. 3404724 + -11.2  -3.29263   CTCGATCCCCTCCAC      GATCTGCCTGCGCC AGCAC GGCGCCGCCGGATC      TTCTGCAGACCCTCT  66 236
LTC53_RS14755 3407237 .. 3407258 + -13.7  -5.93809   TTCCGCCAGACCCGA           TCGGCCGTC GCAA GACGGCCGG            TTTTTTTTGTGCCGG 100 52
LTC53_RS20070 3407713 .. 3407769 + -14.4  -3.02144   GGCATTGATCGCCGC AGCGCTGCTGGTGGCGGCGC-TGTGCTG GGC CGGCACACGCCGCGCCGTC-GCAGCGCG TATTGCAGGCGCTGG  72 79
LTC53_RS14780 3411567 .. 3411582 + -11.8  -4.98531   GGGTGCAAGAAAACA              GGGGCC GCAA GGCCCC               TTTTTCGTTTCCCGG 100 52
LTC53_RS14790 NONE
LTC53_RS14795 3414498 .. 3414510 +  -6.9  -3.17051   GCACGGCGCTGAGGC                CTGCG CGT CGCGG                TGTTGCTCATCGAGC  52 29
        egtB NONE
        egtD 3420299 .. 3420355 + -11.5  -3.05294   GGTTGGCGCGCAGTT CCGCCGACGGCG-GCCGCGCGATCACCG CCGG CGG-GATCAC-CGGCGCGCCGCCGACCG TGTTGCGCCATTTCG  62 437
LTC53_RS14825 3422580 .. 3422610 + -23.4  -3.60805   GCCGCCGCTGACCGA       GGCGAATGGGAGGG ACG CCCTCCCGTTCGCC       TTTCCGATCGCGTCT 100 30
LTC53_RS14830 NONE
LTC53_RS14855 NONE
LTC53_RS14860 NONE
LTC53_RS14865 NONE
LTC53_RS14870 3433231 .. 3433263 +  -7.6  -3.02511   AAGCCTGCATTGCAG      CCGTCCGCTGCG ATCATGTTC CGCTGCAGACGG      TGTTCGACGCATGCA  53 99
LTC53_RS14880 3435750 .. 3435767 +  -8.3  -2.90392   GTTATTTGCAGAAAA             GCCCCGC AAAA GCGGGAC              TCTGCTTGAAGCGTA  54 76
LTC53_RS14890 NONE
LTC53_RS14895 NONE
        coaE 3439755 .. 3439798 +  -5.9  -3.19246   TGCCGATCAGGTTGC CCAGCGCCACCGACAGCGCCG ACTC CGGCGC-GTCGATGAT-CAGG TTGCGTTCGCCTTCC  50 437
LTC53_RS14925 3445727 .. 3445758 + -19.4  -3.17194   GCAAGGGAAGGCGAT      CGCGCCGCCGTTGC GTAA GCAGCGGCGGCGCC       TTGCGTTAGCGAGGT 100 52
LTC53_RS14940 3449393 .. 3449445 + -12.7  -3.21099   GTGATGCCCGGGCCT GTC-GCGTACGC-GCGCC-GCGCTAC GTCC GCGGCGCCGGCGCAGCGGACGCCGGC TTCGTGCTGAACCAC  69 297
LTC53_RS14945 3451674 .. 3451697 +  -2.3  -5.60993   GGGCGGGATTGCTGA          GCGGGGTTG TAAGCT CAAACCCGA           TTTTTTTCTGACGGC  95 26
LTC53_RS14955 NONE
LTC53_RS14960 3454903 .. 3454915 +  -5.5  -2.73364   AAGCGCGGTCTTGAT                GCCGT TTA ATGGC                TGATTAGCCTGGAGA  45 17
LTC53_RS14965 NONE
LTC53_RS14970 NONE
LTC53_RS14975 NONE
LTC53_RS14980 NONE
LTC53_RS14985 3459973 .. 3459985 +  -5.5  -4.70879   GCCACGCTGGCAGCG                CTCAG ATC CTGGG                TTTTTGCCGTTTCCG  77 85
        thiS NONE
LTC53_RS15015 NONE
        trmB NONE
LTC53_RS15025 3466868 .. 3466895 +  -6.8  -4.08767   AACGTGGCGCCATGC        GCGGCGCAGACC AGAT GGCCTTCGCGGC         TTTTCAGGAACTGCC  66 148
LTC53_RS15035 3467548 .. 3467560 +  -4.7  -3.53091   CGCGTGTTGCGCAAG                CCGGC GCT GCCGC                TTTAACGCGGGGAAT  52 8
LTC53_RS15040 3468402 .. 3468424 +  -5.5  -3.14564   CGATGCCGTGTCGCC          GCCGCTGCTT GTCG ATGC-GCGGC           TTGATCCGGGAATGA  49 42
        mscL 3469387 .. 3469443 + -19.9  -3.21912   GTGGTGGTGCGCTTC GCCGACCTCGCCGCGCTGCAGGCCGCC CCC GCCGGCTCGCTGCGCGGCAAGATCGCC TTCGTCGATTACCAG 100 491
LTC53_RS15055 3471494 .. 3471542 +  -6.4  -3.01712   CGCGCGGCTCGACCG CGCCGCCGGCGCACGCGCAGTAG CCGG CTTC-GCGCGGCCGCAAACGGCG TGTTCGGGCGCAGCC  49 3
LTC53_RS15080 3474815 .. 3474829 +  -2.7  -2.52623   TCGTCACCGCTCCTT               CAGCC CTCCA GGCAG               GTCTTATCGAGACGC  39 61
LTC53_RS15085 3476082 .. 3476108 + -13.6  -2.78596   CCCAAGGGCATGACG         CCGCTGCCGGCC ACA GGCCAGCAACGG         TGTCATCAGGGAGTG  67 52
LTC53_RS15105 3479383 .. 3479416 + -11.8  -4.30809   CGTTTCCAGGCTATG    CGCCGC-C--GCCGAGG CCT CCTCGGCAAGCGCGGCG    TTTTGCTGGGTATTG  85 187
LTC53_RS15130 3487079 .. 3487092 +  -5.2  -4.11216   CGGTAAGGCCTCAGT               GCGC CATCCC GCGC                TTTTCCGAGTCCCGA  64 88
        cysI NONE
LTC53_RS15140 3489708 .. 3489760 +  -4.8  -3.05384   ACAATCGGGACTGAA GTCCCTCCCACAGTGC-ACCCGA CCGGCACC TCGCGCAGCCTTGTGGGAGCGAC TTCAGTCGCGACGCG  45 141
LTC53_RS15160 NONE
LTC53_RS15165 3495262 .. 3495281 + -11.4  -3.60151   AACGGCTCCACCCGG            CGGGCGCA GCGA TGCGTCCG             TTGTCGTTTGCGGAG  72 50
        arsC 3495883 .. 3495900 +  -3.3  -3.66356   CATCCTGCTGCGGTA             CG-GCGCG TTG CGCACACG             TTTCAGGTTCACCCT  53 81
LTC53_RS15175 3497313 .. 3497353 + -10.3  -3.81146   GAACGCCTGAGCGCG GCGGCACCGCACGCGCGC CGCGGC GCGCGCG-GCAATGCGGC  TTATTCCTTCAGCAC  74 31
        cobA NONE
        cysK 3501958 .. 3501976 +  -9.5  -3.00525   CGCCAGCGTCTGGCT             CGCGCCG CTTGC TGGCGCG             TCTCGTTTGCCGCCA  57 476
LTC53_RS15200 3502418 .. 3502430 +  -4.8  -3.54029   TTCCAGCGCGCCCAG                GGTG ATCAG CACC                TTGTGCTTCATCGCG  54 156
LTC53_RS15235 3507847 .. 3507868 +  -2.2  -2.52464   GGCGAATCGACTACC           GCGC-GCTG GATCG CAACTGCGC           TCGCTTCGGCAAGCC  37 67
LTC53_RS15245 3509276 .. 3509292 + -15.1  -4.28762   GGGTGGAACAAAAAA              CGCCGGC GAT GCCGGCG              TTTTCGTGCGCTTCT  95 201
LTC53_RS15280 3519784 .. 3519824 +  -8.8  -3.63515   GCAGGCAAAAAAAGC CCGGGCGC-GCGACGCGGC CCGG GCCCTGCTGCTGCGCCCGC  TTATTCGCGGTAGCC  65 99
LTC53_RS15290 3520996 .. 3521014 +  -8.1  -3.61178   AAAAAAGAAGTGAGC            GCCGCGCC TGCA GGC-CGGC             TTTCCGATCCATACC  60 28
LTC53_RS15295 3521559 .. 3521572 +  -9.5  -5.60993   GCAGCCACAAAAAAA               GCGCC TGTA GGCGC                TTTTTTTGTCGGCGG 100 80
LTC53_RS15305 3523400 .. 3523414 +    -7  -3.48593   TGAGGTTCTGAGGCC               GCACGG CCG CCGCGC               TTCTCTGGCAGACTA  56 30
LTC53_RS15310 NONE
LTC53_RS15315 3525343 .. 3525359 +  -2.3  -3.71686   CATCGCTGGCTGCGA              GATAAAT TGG ATTTTTC              TTATATTAGATTCGA  51 317
LTC53_RS15320 3525756 .. 3525773 +  -4.7  -3.36327   CTCGGCTGGACCGCC             GCCGGCC TGCC GGTCGCC              TTCTGAGTCCGATGG  51 2
LTC53_RS15325 NONE
LTC53_RS15330 NONE
        modA NONE
        modB 3528592 .. 3528604 +  -3.3  -3.05384   CGATGCGCGCGATCG                GTCCG GAG CGCAC                TTCCATGGCGCACCG  42 54
LTC53_RS15345 NONE
LTC53_RS15350 3529915 .. 3529970 +  -8.4  -3.05384   ATGCCGCGGTCCCGG GTACGCGCGGGAACGGCACT-GCGGTCCT GGC AGG-CCGCCAG-GCCGCACCC-CGCG-AC TTGCCTGACCACCAA  55 47
LTC53_RS15355 3532140 .. 3532154 +   -10  -3.23216   AATCTGGAAAGACGC               GCGTCA AGC TGACGC               TTGATGATGGTCGCA  63 155
LTC53_RS15360 3533449 .. 3533473 +  -4.1  -2.70932   GTCATCGCCTGCACC          CGCGTGTCCGG GGG CCGGGTACACC          TGCTTACCAACCGCG  41 113
LTC53_RS15365 3536395 .. 3536405 +  -3.2  -3.76125   CATTCCGGAGTCGCC                 GATG TCC CGTC                 TTTCGCTTCCACTCG  56 201
LTC53_RS15370 NONE
LTC53_RS15375 3538232 .. 3538253 + -12.9  -4.13767   CCGCAGGCGCTTGAA           CCGCAGCGC ACCG GCGCAGCGG            TTTTCCACTGGCGCC  85 190
LTC53_RS15380 NONE
LTC53_RS15385 NONE
LTC53_RS15390 NONE
LTC53_RS15395 3542866 .. 3542883 + -14.1  -4.27316   CACGCACAAGAAAAA             GGCCGGC TTGG GCCGGCC              TTTTCCGTTCCCGCG  91 185
LTC53_RS15465 3561488 .. 3561526 +  -4.6  -3.32844   GAATGCAGCCTCGCC CGGCGC-GTGACAGCGCTG CATG CCG-GC-GTCACCGCGCTG  TTGTACAGTCGGGGC  49 141
LTC53_RS15470 3562579 .. 3562607 +  -5.1  -3.18582   GCCTTACCGATGGAT        CCTGTCGCGGCTG AAG CCGCTCCTACAGG        TTCCTCGATCGGCTG  49 393
        pepQ 3564493 .. 3564512 +    -7  -3.31144   CGTCGTGCACGTCCA            GGCCGAGC CAGT GCCCGGTC             TTGTGCCGGTAGAAG  55 411
LTC53_RS15495 NONE
LTC53_RS15500 NONE
LTC53_RS15505 3569141 .. 3569155 +    -7  -2.93991   GAACGGACTAGCCAA               GCGCGG CGA CAGCGC               TATACTTCGATTGCG  50 96
        ssrS 3569362 .. 3569389 + -21.4  -4.36914   AGAATGCAATATCCC        GGAAACGGCGCC GCAA GGCGCCGTTTCC         TTTTGTGCGGCCACC 100 34
LTC53_RS15515 NONE
LTC53_RS15520 NONE
        rpiA 3571603 .. 3571615 +  -4.7  -5.60993   GCTTCTTTTGCAGCT                CCGGC GCA GCCGC                TTTTTTTGTAGGAGG 100 117
LTC53_RS15535 3572357 .. 3572373 +  -4.4  -3.16564   GAACCCGACACCGCT             GT-CGGG AACC CCCGGAC              TTGATCGCGTCGCAC  47 81
LTC53_RS15540 3573375 .. 3573398 +  -4.6  -5.47399   TTTGATGCAAAAAGG          GTCGATTTTT TCAA AAAAAGCGGC           TTTTTTTGCAGTTCC  95 146
        thiE 3574873 .. 3574914 + -12.1  -3.29144   CAGCCCAGATTGCCG TGCGATC-CCGGCGGCGGCG CCT CGCCGCGGCCGGTGGCCGGG TTGTAGAAGAAGTGG  71 426
LTC53_RS20075 NONE
        hemL 3578406 .. 3578440 +  -2.6  -4.52857   CGGTGGTCGCCGCCG     GCTAAACGGAAACCGG GAA CCGGTCGCGGCTTTGC     TTTTGTCTCGGCCGT  67 21
LTC53_RS15570 3579727 .. 3579743 +  -3.7  -3.61398   TCACCTTGGTGGGCG              CGATG ATCCGCG CATCG              TTCTTGGGCAGGGAG  51 343
LTC53_RS15620 3589473 .. 3589484 +  -5.8  -3.23692   CGACAACAGCGCGTG                CTGC GGCT GCAG                 TTCGTCGTCCTCGTC  50 440
LTC53_RS15640 3594352 .. 3594384 +  -7.6  -3.05384   GCGGCACTGCGCGTA     TGCGCGAGCGGCGGC AGAC GACGGCGC-CGTGCA      TTCGCTGCGGCGGGC  53 271
LTC53_RS20085 3595047 .. 3595062 +    -6  -3.68302   CACCTGCGCGATCGC              GCCGGC CGCC GCCTGC               TTCTTCGCCTCTTCC  61 360
LTC53_RS15655 NONE
         ppa 3599224 .. 3599237 +  -6.7   -3.1241   AGCGTGAACCGGTCC               CTTCC TGGG GGAAG                TCTCTTGCGTATCCT  52 166
LTC53_RS15670 3600395 .. 3600435 + -13.2  -2.73875   CAACACGAGCAGTTC GCGGGGAAGCGCCTCGCCC ATGC GGGC-AGGCGCATCGCCGA  TCGTATTGGCAAGCC  67 63
        ilvC NONE
        ilvG NONE
LTC53_RS15705 3609825 .. 3609835 +  -2.4  -3.66356   CGTCTTCTTCCAGTC                 CGCG ATT CGCA                 TTTCGCGTTCCGAGT  51 169
LTC53_RS15710 NONE
LTC53_RS15715 NONE
LTC53_RS15720 3612958 .. 3612975 +  -2.5  -2.70932   ATGCTGTCGGCCCAG             GCCGACG CTGA CGCCCGC              TCGTTCCAGACCCAG  38 74
        leuC NONE
LTC53_RS15730 NONE
        leuD NONE
        leuB 3616513 .. 3616523 +  -4.6  -3.53012   GCTCGTGGCGACGAT                 CCCT CAG GGGG                 TTTGCGGCGCGCAGG  52 273
LTC53_RS15750 3620691 .. 3620733 +  -8.3  -3.30124   CTTCCGGCACTGCGC GCGGCG-GC-CACGCGGCGGC GAT GCTGCAGCGTACGCACGGCGC TTGTGCCGGCTAAAA  58 68
LTC53_RS15755 NONE
LTC53_RS15760 3622852 .. 3622871 + -12.8  -4.65895   GTACTACCGCGAAAA            GGCGGGCC TTCG GGTCCGCC             TTTTTGCATGGGAGC 100 57
LTC53_RS15770 3625445 .. 3625457 +  -6.9  -3.47322   AGCGCGATATACGGA                CGGGC GCA GCCTG                TTGCTTCTCCTACCG  56 40
LTC53_RS15790 3628707 .. 3628738 + -12.2  -4.75308   GGGTCTGCGGTGCCG      GCAGCGCTGCGG CGTACATC CCGCGGCGCGGC       TTTTTACGTGTTCAT 100 42
LTC53_RS15850 3641189 .. 3641222 + -23.9  -3.41878   AAGCAAGGCCCGGCG     CGGCAGCGCCTGCAC ACAT GGGCAGGCGCTGCCG      TTCTGCGTTCAGCCA 100 96
LTC53_RS15855 3644105 .. 3644124 + -10.7  -2.78596   CGACTTGCGGGGTTT            GGGCGCA CGAGGC TGCGCCC             TGTCATCCGGCCCTG  60 110
LTC53_RS15885 3650137 .. 3650147 +  -2.4  -4.56597   CGGTCCTCGGTCCCC                 GGTC CCG GCCC                 TTTTTCCCGCACCAC  67 129
LTC53_RS15890 3651530 .. 3651543 +  -3.7  -3.63968   CGGGACTCGGAAAAA               GCGCG ATAG CGCGA                TTTGAAGCTTTACCG  54 53
        phbB NONE
LTC53_RS15900 NONE
LTC53_RS15910 3657661 .. 3657683 + -18.4   -2.5955   ATTCCAAGGAGCCCG           CCGCGCCCGG TCG CCGGGCGTGG           TCCATTATGAACGCT  87 40
LTC53_RS15915 3659645 .. 3659664 +  -9.3  -3.55444   GGCGGATTCGCGAAA            GAGCTGC ACCGGA GCAGCTC             TTTCGAGGATCAGAC  64 73
LTC53_RS15960 3675897 .. 3675930 +  -3.8  -3.53444   CAAAGCGTGCGCCGT    TCCAGCCGC-TC-CCG GCCT CGGTGACGCGGCTGCC     TTCGTTATTGCACAG  51 67
LTC53_RS15965 NONE
LTC53_RS15970 NONE
LTC53_RS15975 3678257 .. 3678267 +  -2.4  -3.14132   GCCAGGTTATGCCCA                 TGCG CCG CGCC                 TTCGTGAAGCAGCAC  43 208
        grxD 3679972 .. 3679996 + -19.3  -5.40072   TACAGCGGCATCACG          GCGGGCGATCC AGG GGGTCGCCCGC          TTTTTTTGCGAGACG 100 56
LTC53_RS15990 3680988 .. 3681010 +  -7.6  -2.87931   AGGAGCGGCTTCAAC           CGCGACAGGT TCT ACCCGTAGCG           TCTGTCGCGGCTGAA  52 78
LTC53_RS16005 NONE
LTC53_RS16010 NONE
LTC53_RS16015 3686633 .. 3686648 +  -3.2  -4.18018   ACCAGAGATCATCGG              CCGC CACACGCA GCGG               TTTTCGCTGCGCCGC  63 59
LTC53_RS16025 3688844 .. 3688858 +  -2.7  -2.75844   CCGCGCCTGCAGCGC               GCCGC GACCA GCGCC               ATTTCAGGTCCACCG  40 205
LTC53_RS16040 3692800 .. 3692816 +  -6.5  -2.90075   GCCGCAACACGGCAC              CAGAGCG GTT CTCTCTG              TCTACTTACAGGCAA  48 153
LTC53_RS16065 NONE
LTC53_RS16070 3698776 .. 3698813 + -13.4  -3.36273   GCACGGCCGCAGTCC   GGCTGCGCTGC-GCGTG CCTTT CCTGCTGCAGCGCGGCC   TTCATCTTGGCAAGA  74 95
LTC53_RS16090 3703093 .. 3703103 +  -4.6  -3.21099   CGCTAGAATGCGTGG                 CGGG CGA CCTG                 TTCCTGGTCACCCGG  47 450
LTC53_RS16100 3704385 .. 3704401 +  -9.4  -3.14132   GCGCCTGCTGGCCGC              GGCCGA GCTTG TCGGCC              TTGGTCAACAGCGCA  56 366
LTC53_RS16110 3705824 .. 3705850 + -15.8  -5.03314   CGCACCACTTCCCCC         TCGCGCCGGTCG TCA CGACCGGCGTGC         TTTTTTCGCCATGGA 100 63
LTC53_RS16115 3706526 .. 3706539 +  -3.7  -3.14344   TAATCCCGGCCGCAC               CCGCC ACAC GGCGC                TTCATCCACGCCATG  45 38
LTC53_RS16120 NONE
LTC53_RS16125 3708241 .. 3708272 + -11.6  -3.83205   CCGAGATCGAAGTGC      CGCAGGCGCT-GCTG CGT TAGCCAGCGGCTGCG      TTTCCTGTGCGGCAT  79 6
LTC53_RS16135 3713795 .. 3713837 +  -2.5  -4.11216   GCGCAATGAATCCCT GCCGTTTCGTT-GCGCAGGG AAAG CACAGCGCCGACGCAGCCGC TTTTCCGGGTCCCGA  58 32
LTC53_RS16140 3715353 .. 3715411 + -17.5  -3.05816   TTCGTCGCGACTGAA GTCGCTCCCACAA-GGGCTCCACCGGCGC ACG GCG-CGGCGAGGCCTATTGTGGGAGGGAC TTCAGTCCCGACTGC  82 259
LTC53_RS16210 3735479 .. 3735508 +  -5.5  -3.02144   GCGCGGTTGCTGAAA       CGCGGACCGCTGC GGTC GCGGCCATGCGCG        TCTTCCAGCGCATGC  46 508
LTC53_RS16220 3736749 .. 3736759 +  -2.4  -3.73336   TGTCTGAACTAAGGA                 AGGC AAC GCCG                 TTGTTGCGTTGCCCT  51 107
LTC53_RS16250 3742942 .. 3742977 + -10.2  -2.87136   ACCGCCGCGCGGCTT    ATCCGGCCGCGCTCCC GGAC GGCGGCACGGCCGGGG     TCTCGTGCTTGATCG  59 41
LTC53_RS16270 3746349 .. 3746363 +  -3.4  -3.32844   ATCCGGAGTTGGGGC               CGGCGC TGC GTGCCA               TTGTCGGCTAAGGCC  46 0
        metK 3750494 .. 3750528 + -19.4  -3.14132   GCTTGCCCGCGCTTG     CACGAAAACGGGCCGC GTT GCGGCCCGTTTTTTTG     TTCGTGGCAGAACGC 100 45
        ahcY 3762099 .. 3762128 + -23.7  -3.60098   ATCGCTCATCAGTCG       CACATCGGGCGCC GCAA GGCGCCCGATGTG        TTTAAGATCCCGCGT 100 52
        metF 3768165 .. 3768188 +  -3.1  -3.09933   GTAGGAGCGGCTTCA          GC-CGCGACA AACGG TGTCGCAAGC          TTGGCTGGCTTCGGA  44 144
LTC53_RS16355 3769324 .. 3769336 +  -4.7  -3.14132   CGCCGATCGGGTACA                GCGGC AGC GCCAC                TTCCTCGCGCAGGCG  47 271
LTC53_RS16380 3775754 .. 3775779 +  -5.3   -3.9461   ACTCCCACGCCGCCT         GCTCG-GCGAGC AGC GCGCGCACCAGC         TTGTTGTTCAGCGCA  60 254
        rnpB 3794443 .. 3794456 +  -2.3  -3.53012   CTATTTGGGACCGTG               CCGAC CATC GTCCG                TTTCGCCAGCAGCGA  48 166
LTC53_RS16470 NONE
LTC53_RS16475 3795178 .. 3795196 +  -3.7  -3.02829   ATTACCCGCTGCAGG             CCGGCCG GCATG CGCTCGG             TGTTGCGGCCGTCTC  44 73
LTC53_RS16485 NONE
LTC53_RS16490 3798409 .. 3798424 +    -9  -3.14132   GCCGATCCGCGTCTC              GCCGTT CGCC AACGGC               TTGCTCGGCGCGCGC  59 233
LTC53_RS16500 3800179 .. 3800204 +    -6   -3.8709   TCGGTGGCGATGTAG         CGCGGCGCCA CCGCGC TGTCGCCGAG          TTTCTGCCGCAGTTT  63 266
LTC53_RS16615 3827941 .. 3827971 +  -5.3  -2.83894   CGCGGCGCATGCCGG      CCGGCCGCCGACGT GCCA ACGCCGGTG-CCGC       TATAATCATGGTCAT  46 68
        ettA 3829730 .. 3829761 + -18.1  -3.55563   CGCAAGCGCACGTAT      TGC-CACGGCCCGC GCACA GCGGGCCGTGTGCA      TTTCGGCGCTCGGAT  90 51
LTC53_RS16635 3833176 .. 3833221 +  -3.2  -3.85698   GCCGCGCGCGCATCG GCGCCGAATGGCGCAGGCCGCA GGTA TGCG-CCTGCTCGATCCG-CGA TTTGTCCGGCACCAC  56 246
LTC53_RS16705 3853899 .. 3853910 +  -2.2  -4.28432   CCTTGCCCGCGCGCA                G-CGG CAT CCGTC                TTTTCCGTTCCGATT  62 133
LTC53_RS16710 3856213 .. 3856225 +  -4.7  -5.60993   GCTTCTTTTGCAGCT                CCGGC GCA GCCGC                TTTTTTTGTAGGAGG 100 131
        pnuC NONE
LTC53_RS16720 3858072 .. 3858085 +  -4.5  -4.20516   ACTCACAAGAGACGG               CTCAC CGGT GTGGG                TTTGTTAGGTCCAAA  66 280
LTC53_RS16800 3882196 .. 3882213 +  -8.3  -3.17075   CGCAAGCGCGCGAAG             GCCCGCG CCCA CGCCGGC              TTGCGTTCGCGCCGC  56 126
LTC53_RS16820 3889542 .. 3889564 +  -7.7  -3.28791   CCAGCAGGCAGCCCA           CTTCCGCCA CCGTT TCGCGGAAG           TTATGCAGCCCCACT  55 495
LTC53_RS16840 3893706 .. 3893741 +    -9  -3.14132   AACCTGCGTCAGCAC    CGGCAGGATCTTGCTGG ATT CCAGAAAGAGTC-GCCG    TTACTCGCGAACCCG  59 64
LTC53_RS16845 NONE
LTC53_RS16850 NONE
LTC53_RS16855 NONE
LTC53_RS16860 NONE
LTC53_RS16865 3899487 .. 3899498 +  -3.6  -2.94708   GTCGGCGGGTGTCAT                GCCG TCGA TGGC                 CTTCTTTGGACGCTC  42 85
LTC53_RS16895 NONE
LTC53_RS16900 3905034 .. 3905054 +   -14  -5.55769   AGGGTTAATCGGAAA            GGCCGGGA ATATA TCCCGGCC            TTTTTTCTTGTGCCG 100 33
LTC53_RS16905 3905850 .. 3905867 + -14.1   -4.7497   CGTCGATTCAAGCAA             CGCCGGC GCAA GCCGGCG              TTTTTCATGCCTGCC 100 77
LTC53_RS16915 3908424 .. 3908443 +  -2.9  -2.52896   AGCCGACTGCATCTA            TGCA-TCC GGCCG GGAGTGCA            TGCGTTGACCAATCC  39 83
LTC53_RS16920 NONE
LTC53_RS16925 NONE
LTC53_RS16930 3910980 .. 3911006 +    -5  -3.62597   ATCCGGCCCTGCGGG         CCACCTTCTCCC GCA GGGAGAAGAGGA         TTCTTGGCCGCTAAC  55 138
LTC53_RS16940 NONE
LTC53_RS16945 3916734 .. 3916771 + -10.5  -3.31144   GGTCGGCATCGACCT   CGTCCTCGCTCGGGAACG GGC CGATGCCGAGC-AGGCCG   TTCTCCGACTGCAGC  63 502
LTC53_RS16960 NONE
LTC53_RS16965 3920613 .. 3920630 + -10.5  -5.42514   AGCGCAAAGAAAAAA             GCCGGGT CGAT GCCCGGC              TTTTTTCGTTTCTGC 100 52
LTC53_RS16990 NONE
LTC53_RS16995 NONE
LTC53_RS17000 3927054 .. 3927072 +  -4.4  -3.91911   ATCCGGGCCGAGTTG             CTGCCTCG CGA CAAGGCCG             TTTGATTCACATAGG  61 2
LTC53_RS17005 3928555 .. 3928569 + -11.4  -2.78384   TGCTGTGCGGACTGT               TCGCGC TGA GCGCGA               TCTGATGGCGGACGC  62 6
LTC53_RS17010 NONE
LTC53_RS17015 NONE
LTC53_RS17020 NONE
LTC53_RS17025 3932848 .. 3932863 +    -6  -4.30576   CTGGTGGGAGGGAGA              AGGCGC ACAT GCGCCA               TTTTCATGATGGGCA  73 49
LTC53_RS17030 3935387 .. 3935399 +  -6.2  -3.38046   GTGGCCGTGGCGTGG                GGCG ACTGG CGCC                TGTTTGGACTGCGCG  55 125
LTC53_RS17035 3936875 .. 3936886 +  -3.6  -2.71731   AAGCGGCGGACCGCT                TGGC AGAA GCCG                 TGCTTCAGGCATGAC  41 0
LTC53_RS17040 NONE
LTC53_RS17045 3938788 .. 3938800 +  -3.3  -3.29263   CGTTCCCATTGCGCA                TGCCG ACA TGGCG                TTGTCGCGCCCGTAT  47 106
LTC53_RS17070 3941499 .. 3941513 +  -2.8  -3.57462   AAGCGGATACTGATA               GGAC TGCCCTT GTCC               TTTGAAGATCAGCTC  50 233
LTC53_RS17130 3957201 .. 3957233 +  -6.2  -3.16668   GGCGCGGTCGATCGC     CGC-GTCCGGCAGCAG CGG CGGCT-CCGGCCAGCG     TTCGTCCAGGTATTC  50 516
        queD 3960828 .. 3960838 +  -8.2  -3.53012   GTGCCGGATGCAGTG                 CCGG TGG CCGG                 TTTCCGCCCAAGGCG  62 70
LTC53_RS17155 3961499 .. 3961528 + -13.7  -4.82901   CCCCCGTGCAGCCAA       GACCCGGTAGA CCCCTCCC TCTACCGGGTC        TTTTTATGGCCGGGA 100 106
LTC53_RS17165 NONE
LTC53_RS17170 3963701 .. 3963743 +  -5.3  -3.17392   TGCGATGCGGAGGGC GTCGCG-GCGTGCCGCGCCG CGTC TGGCGCCGTCCGCTCGCACC TTCGGTTCGCGACTC  49 282
        btuB 3965741 .. 3965753 +  -4.7  -3.58343   CTGCGGTCTCGCCGA                CGCCG CTA CAGCG                TTTGGCGGTCGTGAA  52 97
        fabA 3968709 .. 3968724 +  -4.6  -3.40403   GCGCGTGGGGCTGTT              CACCTC GACG GAGGCG               TTCTGATGCGCCGCG  51 4
        fabB 3970292 .. 3970322 +  -4.8  -3.03243   ACTCGGCTGGGAAGA     T-G-GCG-GCCGGCA TCGC TGCCGGCGCGCACCA      TGTTGGCGGCTCCGT  46 379
LTC53_RS17230 NONE
LTC53_RS17235 NONE
LTC53_RS17240 3981486 .. 3981503 +  -4.1  -2.52516   ACAGGCCCGCATCGC             TGGCGCGG GTC TCG-GCCA             CTTCGTAATAGGCGC  39 343
LTC53_RS17255 NONE
LTC53_RS17260 3986267 .. 3986292 +  -3.1  -2.54276   CGCTACCTGCAGCGC         CCGACCCGGAG CCAC CTCATGTTCGG          CTATTACTTCCGCCT  39 91
LTC53_RS17265 NONE
LTC53_RS17270 NONE
LTC53_RS17275 NONE
LTC53_RS17280 NONE
LTC53_RS17285 3991706 .. 3991727 +  -4.3  -2.64912   ACGACAAGCCCCACG           GGGACTGCG ATGA TGCCGTCTC            GTTCTGCGTTCGCCC  42 13
LTC53_RS17290 NONE
LTC53_RS17295 3994615 .. 3994671 +  -4.3  -3.21276   GCGCGCCGCAGGCAT CG-TCGGCGCCGGTCGTGGCCGTG GCCGGAATCG CGCCGTAGTAACCGGCGCCGACCG TGTTGTCGACGAAGC  45 180
LTC53_RS17310 3997975 .. 3997991 +    -8  -3.65522   GCCAGCGCGCCAGCA              GCTGGT ACTGC ACCAGC              TTGTTGGACTCGATC  60 477
LTC53_RS17365 4007426 .. 4007443 + -10.5  -4.58466   AAGTTTTATGCAGGA             CCCCGCG GCGA TGCGGGG              TTTTGTCGTTGTGGC  93 74
LTC53_RS17380 NONE
LTC53_RS17390 4013605 .. 4013634 + -12.9   -4.5123   CAATCGCCATGTTCG       GATAAACGGGTCC TTCG GGGCCCGTTTTTC        TTTATTTGATGCGTT 100 47
LTC53_RS17395 4014613 .. 4014634 +  -8.7  -3.28712   GGCCTTGACCTCGGG           GCTGGTCAG CGCC TTGGCCAGC            TTCTGCACGCGCGGG  59 120
LTC53_RS17420 NONE
LTC53_RS17425 4019516 .. 4019569 + -30.5   -3.5947   CAAGACCCTGTAGGA GCGGCTTCAGCCGCGACAGACGTTA TGGG TAACGCTCGTCGCGGCTGAAGCCGC TTGTGTCTAGAGGTT 100 73
LTC53_RS17430 4020936 .. 4020974 +    -5   -3.1505   CACCACGTGGTTGCC   GACCGCGGCGAACATGCG CCG CGCCTGGTGGTAGCGGCC   TTCGTACAGGGTGAT  47 256
LTC53_RS17445 4023357 .. 4023367 +  -8.2  -3.17723   CCACGCCGACCGGGC                 GGCC CTG GGCC                 TTGCCTTCGGCGTCG  56 387
LTC53_RS17475 NONE
LTC53_RS17490 4032180 .. 4032223 +  -2.2  -4.12188   CGCAATGCGCAGTGC CCTGC-CGCATCGGCCTGCGC GAC GGGCACGCTTACGCGAGCAGC TTTTCCAGCTCGTCG  58 226
        msrB 4033737 .. 4033786 + -17.7  -2.70932   GCCGCGACGCCGCAG CGGCGAGCGGCGCCGTGCTGCAG GCCG CTGCGACGCGGCGCTGCCCATCG TCCTTGAGAACAACG  85 43
        motA NONE
        motB 4036634 .. 4036653 +  -9.2  -3.08679   CGTTGGCGATCTGCT            GGCGTTGC GCCA GCACCGCC             TGTTGCCTGGCGAAC  55 424
LTC53_RS17525 NONE
LTC53_RS17530 4038552 .. 4038563 +  -2.2  -4.56597   GGGTAATCAGGTACC                CGGA AGCC TTCG                 TTTTTGGCGCACAAG  67 102
LTC53_RS17535 4039516 .. 4039528 +  -6.3  -3.62096   CACTACTTGAATCGC                CCATT TTT AATGG                TTTCGCATCCTGGCA  56 406
LTC53_RS17545 4041907 .. 4041952 +   -14  -2.78384   CACCAGATGCTGTAG CCGTACTCGC-GCAGGCGGTCG TAGG CGACCGCCAGCAGCGAG-GCAG TGTCGTGGGCGCCGA  67 222
LTC53_RS17555 4042975 .. 4042992 +  -4.7  -2.57344   CGGGGTCACCACCAT             CAGCGGG ATCA CCTGCAG              CTTCTCAAAGCCGTC  42 293
LTC53_RS17575 4047278 .. 4047323 + -12.5  -2.58677   GCGCGGTCGCGGCGC CGGCAACGCGCAT-AGCCGCGC GGT GCGCTACTCATGCGCGATGCCC ATTCATCATTATCTG  64 172
LTC53_RS17580 4048043 .. 4048066 +   -16  -4.09864   TGGGCATTGGCATCG          CGGGGACGGC TGCG GCCGTCCTCG           TTTTGCGCCGTCCAT  93 54
LTC53_RS17600 NONE
LTC53_RS17605 4054190 .. 4054234 + -12.9  -2.90075   CCGATTCGAAGCCCT GC-GCCAGGCCCA-GCC-CGGC CAGC GCCGCGGCATGGGTCAGGCCGC TGTCGTTGAACACCA  69 285
LTC53_RS17615 4055287 .. 4055297 +  -6.8  -6.07627   CCCGCGACCACAGCG                 TGCG CGC CGCA                 TTTTTTTTTCCACGT 100 215
LTC53_RS17620 4056392 .. 4056412 + -12.5  -2.70936   TGCCCGCACCGCCGC            CGCGCCGCA TGA TGCGGGGCG            TGATCTCGTTCATCG  65 79
LTC53_RS17625 4057148 .. 4057190 +  -9.8  -3.00525   GGCAGGACGCGCCGC CGCGGCGCGGTTGCCGGCG CCGATC CGCTGGCAG-TACGCTGCG TCTCCTTTGCCCGAG  60 60
LTC53_RS17630 NONE
LTC53_RS17635 4059363 .. 4059389 +  -8.6  -2.87132   CCGGGCGGGAACGCA         CATGAGCGCAGC GAC GCTGCGCTGGCG         TCTGTACGAAGCCGG  54 179
LTC53_RS17640 NONE
LTC53_RS17645 NONE
LTC53_RS17650 4062789 .. 4062799 +  -4.6  -2.54896   GCTTCCGCCGCGGAC                 CGGG AGA CCTG                 TGGATTCGATCACAC  42 322
LTC53_RS17655 NONE
LTC53_RS17660 4065414 .. 4065438 + -15.7  -2.65112   CGCAGCACTTCCAGC          GCCTGCTGCGG CTG CCGCATCAGGC          TGCTCTCGGTCAGTT  69 376
LTC53_RS17675 4069938 .. 4069983 + -12.4  -3.53012   CCCCGGCGGCCAGAA CGGCGTGCTGCGCGTCGCCGG CTGAA CCGGCAGCGCCC-GCGCGGCG TTTACGCCGGCACAA  74 1
LTC53_RS17680 NONE
LTC53_RS17685 NONE
LTC53_RS17690 NONE
LTC53_RS17695 NONE
LTC53_RS17700 4075303 .. 4075343 +  -7.5  -3.21099   CCGGGTCGCATCGCC GGC-CTGGCCGAGC-GCAG AGCGA CTGCCGCCCAGCCGGAGCC TTGCTGATGCCGCCA  54 64
LTC53_RS17705 NONE
LTC53_RS17710 NONE
        rffA NONE
LTC53_RS17720 4079797 .. 4079811 +  -2.7  -3.57144   GCCGCCTGCATGCCA               CACCG ATGGG CGGGG               TTTCGCAATCGCCGC  49 311
LTC53_RS17725 NONE
LTC53_RS17765 4089150 .. 4089169 +  -9.2  -2.71731   CGTTGCAGCAGGCCA            GCGCCGGC TGAG GCTGGTGC             TGGTTCGGGACTCGG  55 15
LTC53_RS17775 4091555 .. 4091587 + -21.3  -2.71712   TGCGCGGCGATGGCA      ACGACCGGCAGCGCT CAC GGCGCTGCCGGTCGC      GTTTCGGGCCAGCAC 100 72
LTC53_RS17780 4095092 .. 4095114 +  -5.5  -4.36596   GACTCGTGCGCTCCC           ATCGCTGTC CGACC GGCAGCGAA           TTTCTTGGTTGTCGC  72 402
        treA 4097715 .. 4097730 +  -7.5  -3.57144   TTCGGCGACACCGCC              GCGGC GTCGAA GCCGC               TTTCGGCATGCGCGA  60 452
LTC53_RS17795 4099704 .. 4099723 +  -4.8  -3.96298   GCGACAGGTTGCCAA            CGCCGCGG CGAT CCCCGGCC             TTTGCTTGGTCCATC  61 110
LTC53_RS17815 4103928 .. 4103969 + -10.1  -3.06183   CATGCCCAGCACGCT GTCGAGCAGGAACTCGACG CGGT CGTCCAGGTGCTGCTCGAA  TTCGCTCAGGGTGAC  59 282
LTC53_RS17835 4108678 .. 4108702 +  -6.4  -3.53012   TGGCCCCGCTCGGCC         TGGCGCGCGAT CTGC AACG-GCGCCA          TTTCCAGCACCGGCA  55 443
LTC53_RS17850 4110497 .. 4110511 +  -5.6  -3.34013   TCCGCACGCGGGTGG               CGTCCA CCA TGGCCG               TTGCTTGCGCCGATC  51 127
LTC53_RS17860 4114458 .. 4114495 +  -5.6  -4.61868   ATCGCAGTGTTCGTG  TGAGCGCG-G-CCTTCTG CGTG CAGATGGATACGCGCTCG   TTTTCTATCTGCCTG  77 177
LTC53_RS17870 4115603 .. 4115621 +  -4.5  -4.07568   GGCCGACACGGCAGT             GCGGATG GGCGG CATCAGC             TTTTCAGGAAAGGAG  62 218
LTC53_RS17890 4118725 .. 4118753 +  -5.1  -3.30124   GAAGAAGACTGAACG        CGCGCACCATGCA ACT TCTAGGGAGCGCG        TTGTCCCCAATGGGC  51 29
LTC53_RS17945 NONE
LTC53_RS17950 NONE
LTC53_RS17955 4135599 .. 4135618 + -16.4  -3.64703   GGCCGCAAACGAAAA            CGCCCGCC GAAA GGCGGGCG             TTTCCATCGAAGGCA  88 263
LTC53_RS17970 4138150 .. 4138198 + -24.6  -3.17723   GGCACCTGCGCAAAC GCAACGGGGCCGCAGGCGCGCCG GCAT TGGCGCGCATACGGCCCCGT-GC TTGCCTTCCCGCTAG 100 63
LTC53_RS17985 NONE
LTC53_RS17990 4144081 .. 4144136 + -28.5  -2.62184   AGCCAGATTGTGGGA GCGACTTCAGCCGCGACCGGATCTTC CTGGT GAAGC-CCGGTCGCGGCTGAAGCCGC TCCTATAGGGAGCAC 100 67
LTC53_RS17995 4144891 .. 4144915 +  -5.8  -3.05384   GCAGACGCTGGACAG         CGT-GCGCGTGT TCG ACAC-CGCCACG         TTGCATGCACAGGGC  47 119
LTC53_RS18000 4145454 .. 4145473 +  -6.3  -4.24294   GCTGCGGTCCAGTTC            GGCGCGC ATGCGG GCGCGCA             TTTTCAATACTTCCT  69 417
LTC53_RS18015 4152313 .. 4152327 +    -7  -5.24129   TGCGCAGCGCCAGCA               CCGCGG CTC CCGCGC               TTTTTTGTAGGAGCG  93 55
LTC53_RS18045 NONE
LTC53_RS18050 NONE
LTC53_RS18055 4161030 .. 4161057 +  -6.8  -3.80573   CGTTTGCCCACTCGC        CCCCGTAGGGGC TTCA GCCGCGACGGGC         TTTACTGATCATGCC  64 70
        aroQ 4163507 .. 4163523 + -10.8  -2.92667   CCCTCTCCGCGTTCG              CCGGGC CGCGT GCCCGG              TCATTTCCCGATTCA  61 84
        accB 4164085 .. 4164103 +  -3.7  -2.74523   CTCGCGGGAGCAAAA             GCGGGCG CGACA TGCCCGA             TGCTCTTCAGAGTCC  41 71
        accC 4165553 .. 4165579 +  -9.4  -2.56715   GCCGGGAGTGGGGAA         TCGGGAATCGCC AGA GCCGGTTCCTGA         TGGATTCCTGGCGAT  54 42
        prmA 4168842 .. 4168858 +  -2.9  -2.73275   AACGGGGGCGGTCAG              TGTCCTG CGG TGGGGCA              TCCTGTGTGTGCATC  39 489
LTC53_RS18100 4169542 .. 4169565 + -13.8   -2.7556   ACACTAGGCCACGAC          CGCGCTGCAG CCCG CTGCCGCGCG           TGCTTGAATAGCGTT  69 137
LTC53_RS18105 NONE
         fis 4170997 .. 4171022 + -17.7  -5.00138   ACCACTGATAAAAAA         GCCGCCTTTTC TGCA GAAAAGGCGGC          TTTTTCATTTCAATC 100 131
        purH 4177678 .. 4177696 +  -2.2  -4.19953   CCTAGCCACGCGCCC             GCTGCTGC CTT GCCGTCGC             TTTTCCCATTCCCTA  62 112
        purD 4179118 .. 4179175 +  -3.9  -3.64703   CAGTCGGGACTGAAG TCCCTCCCACAAGAGGCCTCGCAGTTCC GCG GTGCCGGAGTAGCC-CTTGTGGGAGCGA TTTCCGTCGCGACGA  54 114
        yccS NONE
LTC53_RS18165 NONE
LTC53_RS18170 4186635 .. 4186652 +  -8.3  -3.29144   AGCGCATCGTAGAAG             CGCGGCG ATAC CGCCGCC              TTGTAGGCGGCCTCC  59 524
LTC53_RS18180 4188151 .. 4188166 +  -4.6  -3.51774   GCGTGCTGGAGCACT              GAGCGC GCCC GCCCTC               TCGTTTTTTCTTCGT  52 24
LTC53_RS18185 4188501 .. 4188529 + -23.2  -3.68836   CTGATCGACGCCGCG        GGCCGCCGCTGC CACGC GCAGCGGCGGCC        TTGTTCGATCGCTCT 100 37
LTC53_RS18190 4189105 .. 4189134 +    -7  -2.82635   ATTCCGGCAAGCGCC       GCAGCGCCGGCA CCACCA TGCCGGCATCGC        TGTAATCGTGCGCCT  50 136
LTC53_RS18220 4193379 .. 4193392 +  -4.5  -3.19157   GCCCGGCCGAGCCAG               GATGG CCCC CCGTC                TTCGTGAGCTTCATC  47 5
LTC53_RS18225 NONE
LTC53_RS18230 4198036 .. 4198074 +  -9.7  -3.15544   CTCGCCGATGCGGCC  GAGCAGATCGAGCTGGGT TTCC AGCCAG-TCGATGTGCTC   TTCCTCCGACTCCAG  60 263
LTC53_RS18250 4199674 .. 4199693 +  -4.3  -2.74563   ATAGCCACCATGGTG            TC-CACGC AGCAA GCGTGCGA            TAATTGCGATCTGCG  43 31
LTC53_RS18255 4199797 .. 4199821 + -18.7  -5.95539   AGCCAAACAAAAAAA          GAAGGCCGATC TTT GATCGGCCTTC          TTTTTTTGTTTGGCG 100 35
        coq7 4201875 .. 4201887 +  -2.6  -3.53012   CGGCTGATGAAAGCG                GTCG CCTAC CGGC                TTTGAGCACAGCGCG  48 8
LTC53_RS18275 4202909 .. 4202942 +  -2.2  -3.34398   ACCGGCCAGCGTGCC     CAGCGTCGGCCACA GACGGG TGAAGCCTTCGCTG      TATTTGAGGCCGAGC  45 336
         crp NONE
LTC53_RS18295 4205770 .. 4205784 +  -8.5  -3.06302   AGCGAACCCGGCCAC               CGGCG CACGC CGCCG               TTCGGTCGGCATGCT  55 225
LTC53_RS18300 4206262 .. 4206291 +  -9.9  -2.62983   CCACCACCGGCACCG       CGGCCG-CCTGCAG CAA CGGCAGGTCGGCGG       TGCTGTCGGAATAGG  55 135
LTC53_RS18355 4216396 .. 4216416 +  -3.2  -3.29144   GCTTGCGCGACCATC           GCGCA-GAC GCAA GGCATGCGC            TTCTGACACCGCTGC  46 125
LTC53_RS18360 4217140 .. 4217160 +  -6.7  -3.14132   ACCAGGTCATCGCCC            ATGCGCTGC AGC GCGGCGCGG            TTCATGCCGCGCAGG  50 142
LTC53_RS18370 NONE
LTC53_RS18375 NONE
LTC53_RS18380 4222860 .. 4222897 +    -7  -2.71144   CGAGCTGCGCGCGAC  CGCGCCGGCGC-TG-CGGG ATC CCTGACATGCGCCGTC-CG  TGGTTGCGCCGCCTG  48 1
LTC53_RS18385 NONE
LTC53_RS18390 NONE
LTC53_RS18395 4224087 .. 4224098 +    -3  -3.48924   TAAGCCGCGACAGGC                TCTA CGGG TAGA                 TTCTGTCGCGGCTGA  49 71
LTC53_RS18410 4227592 .. 4227603 +  -3.6  -3.51934   CCGATGGTGTTGAAG                CGGC GCAG GTCG                 TATTTGTACGGCGCG  49 508
LTC53_RS18425 4230316 .. 4230350 +   -12  -3.25823   AGCATGACTGGCAAG     TGAGGCGCAGCGCCTG AAG CAGGCGCTGCCACACG     TTCCTGTAGGAGCGG  68 23
        pdhA NONE
LTC53_RS18460 NONE
LTC53_RS18465 NONE
LTC53_RS18470 4242053 .. 4242100 +  -9.9  -2.54193   CTGGCATTGGCCGGC TGAACTG-CGCGCCGCCGCC-TA ACAC TACGGCGGCGGCGTGGCGATCCA TCAGTTGCGCTCGTC  57 23
LTC53_RS18495 4248138 .. 4248195 + -14.8  -3.21276   GCGATCCGATGCATT GCGTGC-GCCGATCCTGTCGGTCGCGGC TGAA GCCGCT-CCTACAGGGAGGGCAGCACGC TCTTGTAGGAGCGGC  76 99
LTC53_RS18505 4250831 .. 4250877 + -19.5  -2.57211   TGTCCCGACGGGAGA GGGGCCATGGTCCCGACTG TTCCTTCTC CCGTCGGGACCATGCCCCC CTTCTCGGGGAAGGT  93 228
LTC53_RS20095 4252116 .. 4252143 +  -4.8  -3.72893   CTGAGTGTCGCCATG        TACGCCGCGTTTG CGG CAAG-GCGGCGCG        TTTACTGGGGAGGTA  55 158
LTC53_RS18525 4257000 .. 4257015 +  -4.6  -3.71917   AACGTATGCCGCGCA              GCGTCG TAGG CGAAGC               TTTCCCCTTTGCCAT  58 466
LTC53_RS18570 4270519 .. 4270531 +  -6.2  -3.25823   GCTGCGCACCATCGT                CGCC ATGTA GGCG                TTCATGTACGCCGAA  52 294
LTC53_RS18580 4271887 .. 4271908 + -13.7   -5.8187   GCCACACACACAAAA           GCGCCG-CCC CGA GGGACGGCGC           TTTTTTTGTTCGATG 100 85
        fucP NONE
LTC53_RS18635 4283511 .. 4283535 +   -15  -3.38291   GCCGCTCCTACATGG         GCGCGCGTGGC CCTG GCC-CGCGCGC          TTGTCGCGTTATACC  80 354
LTC53_RS18670 4289952 .. 4289962 +  -3.2  -3.74391   GCCCTGGGTTGAAGG                 TGAC TGC GTCG                 TTGGTTTGTTGTGTA  55 52
LTC53_RS18705 4298626 .. 4298639 +  -8.1  -3.30124   CCCGGGCCTTGCGTC               GCGGT TAAA ACCGC                TTCTACAGGATGCGC  56 141
LTC53_RS18715 4300564 .. 4300622 + -21.9  -3.14552   TCGGCCTCACTGTAG G-AGCGGCTTCAGCCGCGACAGGGTCTA TCCG TAGACGCGGTCGCGGCTGAAGCTCCTAC ATTTCTTGATGGCGT 100 75
LTC53_RS18720 4301388 .. 4301406 +  -9.5  -3.53012   GTTTCCATCGGCCGT             TCGCCCC CTGTA GGGGCGG             TTTCAACCGCGACCG  64 85
LTC53_RS18740 4305814 .. 4305837 +  -5.2  -2.83522   TGGCGTTGGGCAATA          CCAACATGTC GAAG GTCTTGTTGG           CTTTGATCAGCGCGT  44 206
LTC53_RS18750 4308735 .. 4308784 + -17.3  -3.05935   CGCGTCGCGACTGAA GTCGCTCCCACAATGCATTGCGGC AAG GCTG-GCTGCATTGTGGGAGGGAC TTCAGTCCCGACTGT  82 279
LTC53_RS18760 4312483 .. 4312513 + -10.3  -3.62597   CCGCTCAGGCAGCGG      GC-GCGGGCGGCGC TGCT GCGCCAGCCGCCGC       TTCTTCACGGATGCG  70 256
LTC53_RS18780 4317657 .. 4317715 + -16.8  -2.73875   TGCGGCGCGGGGGAC GGCATC-CACAACCAGCGCCGATCGACG GGACA CGTCGATCGGCGC-GATTGCGCGGCGCC TACTCTTGCGGCGCG  80 143
LTC53_RS18815 4326022 .. 4326050 +  -2.9  -3.48924   CGCGGCACCGATGGA        TGGCGCGGCCGGT CAG GCTTGCGGCGTCG        TTCTGTCGCGGCTGA  49 51
LTC53_RS18820 NONE
LTC53_RS18825 NONE
LTC53_RS18830 4327554 .. 4327568 +  -3.4  -3.14132   GCTGAGCTGCGCTGC               AGTCGC CAC GCGGCC               TTCATACCGCGCAGG  44 36
LTC53_RS18835 4328842 .. 4328852 +  -8.2  -2.91264   CGAAAAAGCGGTCGG                 CGCG GCG CGCG                 TGTCTACCTGGGGCG  54 66
LTC53_RS18840 4329605 .. 4329647 +  -4.8  -3.04144   GCTGGACGCCACCGA GCCGGCCATCGGCGCGCGCGC GTGA GCGC-TGC-CCGCTG-CCGCC TCTTCGCCCTGGCCG  45 1
LTC53_RS18845 4331198 .. 4331211 +  -9.5  -2.91997   CTGACTTCCTTCGTC               GCGGC TGAA GCCGC                TCCTTGTATCTGGAC  56 150
LTC53_RS18850 4332645 .. 4332697 +  -8.4  -3.05384   GCTGTCGCGGCTGAA GCCGCTCCTACAG-GGACTT-GCGGG ACG CCCGCCGGGTGCACTGTGGGAGGGAC TTCAATCCCGACGCC  55 243
LTC53_RS18855 NONE
LTC53_RS18860 4335141 .. 4335177 + -10.1  -4.07885   ATGGGCCTGGCTTCA    AACGAATGCCGGTGG CAAGCGT CCGCCGGCATTCGCG    TTTTCGGCAGCGCTA  78 374
LTC53_RS18885 NONE
LTC53_RS18890 4340500 .. 4340531 +  -2.9  -3.14344   CAATTGCGGTAGAGC     CGCGCCGACGAAGGC GCTA GCCTGCC-CGGC-CG      TTCATCCACCGCCTA  44 345
LTC53_RS18895 NONE
LTC53_RS18925 4349345 .. 4349363 + -17.4  -3.57144   ACGTGCAAAACGCAA             CGGGCCGC AGC GCGGCCCG             TTTCCACGTCAGGCG  89 51
LTC53_RS18965 NONE
LTC53_RS18970 4355127 .. 4355154 +  -3.2  -3.53012   CGCAGGCGGCGATCA        CCGCAGC-GCGGG TAC CCGGCAGGAGCGG        TTTCAACCGCGACAA  49 58
        metE 4365704 .. 4365726 +  -6.3  -3.54029   ATGTACGGCATGTCC          GT-GCGCGAGC ATC GC-CGCGCAAC          TTCTGGTTCATGCGC  56 98
LTC53_RS19040 4372943 .. 4372959 +  -6.5  -3.58343   ACGCTCACTTCGCGG              CGGCTGA AGC TCAGCAG              TTTGCGGCTGATCGC  57 487
LTC53_RS19050 4376306 .. 4376352 +  -2.9  -2.72379   GAGCGTCTCCGCCGG TGCCGGCTTCAG-CTGGTGATGC CAC GCCTCACCGCACTGCCGCC-GCA TCCTTCCGACCTTCC  40 7
LTC53_RS19055 4378667 .. 4378677 +  -2.4  -3.61398   GCAGGTACAGCGACG                 CGGC ATG GCCC                 TTGTTGCGCCCGCCG  50 352
LTC53_RS19065 4381132 .. 4381162 +  -2.3  -3.06796   GGCCGCGGAGAACGC       GCCGGCGGCAGTG GCGTG CACCGGCAACGGC       TTGCGTGCGATCAGC  41 446
LTC53_RS19125 4392620 .. 4392632 +  -7.7  -3.68222   CTTGCGCATGGCGGC                GCAGA TGA TCTGC                TTGTTGGCCTTGCCA  64 212
LTC53_RS19140 4397034 .. 4397047 +  -5.2  -3.53012   GGTGCATCCAGCAAG               CGCG ATGCGA CGCG                TTTGCGGCCCGCAGC  54 239
LTC53_RS19145 4397511 .. 4397524 +  -2.3   -4.2123   ATTGGCAAAAGCGGG               GACGC GTAC GCTTC                TTTCTTCGGTGAATC  62 51
LTC53_RS19165 4400587 .. 4400599 +  -4.8  -3.46345   TCGCGGCTGAAGCCG                CTCC TACAC GGAG                TCTCTTTTCCTCCTT  51 111
LTC53_RS19170 4402469 .. 4402489 + -12.5   -4.8622   CGAATACCCGAAGGG            CGGCGCGCA GGA TGCGCGACG            TTTTTCGTTGGCACA 100 255
LTC53_RS19175 NONE
LTC53_RS19180 4406144 .. 4406154 +  -2.4  -3.40403   CAACGACCATCCAAG                 GCGC TTT GCCC                 TTGTCATGCGCGACA  46 149
LTC53_RS19210 4415745 .. 4415775 +   -11  -2.62263   TGCACCACCGCCAGG       CCGAGCCCGGTGCC GCT GTCGGCGGGCTTGG       TGCTGTAGAACGGCT  59 164
LTC53_RS20110 4419578 .. 4419594 +  -3.5  -2.80197   ACCTGTGATCGCACA              CGGGGCG CAA CCCGCCG              TACGTTTCTTCTCTT  41 33
LTC53_RS19240 4421566 .. 4421596 + -26.2  -4.26076   TCGCCGCCGCGCCGG       CGGGCGCGGGAGGG AAA TCCTCCCGCGCCCG       TTTTCGTGAGGATCG 100 59
LTC53_RS19255 4426681 .. 4426703 +  -5.5  -3.01712   ATTGCTCGCTGCTGT          TCGGCCGCGC ATGA GCACG-CCGA           TGTTGACCGCGACCA  47 12
LTC53_RS19260 NONE
LTC53_RS19265 NONE
LTC53_RS19270 4430080 .. 4430108 + -11.6  -3.05384   TGCTTGATCGCCTCC        GGCGCGAACGCC TCGCT GGCCATCGCGCC        TTCGATCACCCCGGG  62 186
LTC53_RS19320 NONE
LTC53_RS19325 4440310 .. 4440326 +  -2.2  -3.21772   GGTGCCGCTCGCCAC              GCGG CTCGGATTT CCGC              TGTTCTGCAAGGATT  44 307
LTC53_RS19330 4440940 .. 4440952 +  -3.3  -2.93853   CAGTAACCGATCGCG                CGGCA GCT TTCCG                GTTTCGTTGCGCGGC  42 126
LTC53_RS19350 4447518 .. 4447536 +  -5.9  -3.21276   GCTCCTACACAGGCT             GCCTGCG CAACC CGGAGGC             TCTTGTAGGAGCGGC  51 72
LTC53_RS19355 NONE
LTC53_RS19360 4449908 .. 4449926 +  -8.1  -3.21099   CCGAAAAGCAACTGC            GC-CGCGC CATG GCGCGAGC             TTGGTCGTGGACGAA  54 227
        hemF NONE
LTC53_RS19370 4451297 .. 4451350 + -11.6  -2.74144   CCGACCGAGCCGCGC CGCTAGCCGCGG-TGACGCCGCTTC CTGTA GGAGCGGCTTCAGCCGCGACCGGAG CTTTCCCGGTAACGC  62 20
LTC53_RS19385 4456066 .. 4456112 + -21.7  -3.40403   CGAAGGCCGGGATCG CCGGG--AAGCCCGCCGGTGCCG TGA CCGTACCGGCGGGCTTGACCCGG TTGTGGTACCACAGA 100 152
LTC53_RS19410 4460820 .. 4460867 +   -14  -2.62396   GCGCCGGCTCGATGG CGC-GCTCGCACATGGCGGATGC GGC GCTGCCGCCCTGTGTGCGCAGCG TGCTGTCGCCGAATC  69 481
LTC53_RS19415 4461684 .. 4461703 +  -7.8  -2.70932   GCTGGATGCACTGTG            GGAGGGAC TTCA GTCCCTAC             TGCTTCCGAAGCCGA  51 271
LTC53_RS19460 4472607 .. 4472632 +  -8.3  -3.34013   CCGGTGACGTGCAGG         CCGGTCCAG TACAGCGC CTGGATCGG          TTCGTTGAGGAAATG  59 364
LTC53_RS19500 4478785 .. 4478800 +  -3.2  -3.33696   ACAGCCCGTGCCCGT              GCGC CTTCAGCA GCGC               TTCCTTGGCGCACCA  47 456
LTC53_RS19510 4479637 .. 4479654 + -14.1  -3.66178   GCAGGTGTATGCAAA             CGCCCGG CCCG CCGGGCG              TTTGCGCTTGCGGCG  80 55
         acs 4488157 .. 4488175 +  -4.5  -3.11222   GATCGCTTCATCACC             CAGGACG CCCGA CATCCTG             CTTTTGCCGTTGCCA  47 93
LTC53_RS19545 4489078 .. 4489127 +  -7.2  -3.29043   CGCCTGGAGGTTTTC GGTCGC-GGCT-GAAGCCGCTCCTA CAG TGGGA-TGGCGTCGAGCCTGCGCCC TTGTAGGAGCGGCTT  54 218
LTC53_RS19550 4490122 .. 4490164 + -16.9  -2.53263   TGATCCGCGCACGCC CCGCCACTGCCGGCGCAGCC CTGC GGCGGAGCCGGCC-TGGCGG TGAATTCCAGATAGG  79 38
LTC53_RS19560 4496693 .. 4496734 +  -3.6  -2.71712   TCGCCTGCCTCCAGT GCGACGGC-AGCTGC-GGGC GTAC GCACAGCGCCTCGCCCTCGC CTTTCAGCCCGAACA  40 332
LTC53_RS19575 4500967 .. 4500978 +  -7.2  -3.36341   CACGCCTGGCGGTGC                GCGC GTCG GCGC                 TGTTTGACGCGTCTT  56 7
LTC53_RS19580 4503380 .. 4503391 +  -5.8  -2.52896   GAAGAAAGGCTTGAT                CGTG GGCG CACG                 TCGCTTCCCGGGTCA  44 319
LTC53_RS19600 4516137 .. 4516160 + -15.3  -2.80816   GCGCTGACCGCTGCA          GGCCACGCC TGGCTT GGCGTGGCC           TGTGGTCGCTGGCCC  76 34
LTC53_RS19610 4517853 .. 4517867 +  -5.6  -2.70932   TCCAGCGCCTGCACC               CGCGCT TCC AGCTCG               TCGTTGCCGGACGCC  43 316
LTC53_RS19620 4519867 .. 4519925 +    -5  -3.53012   TGTCCACCGTGGTCA GCGTGGTGCTGTTGAGGTCGTGGCCG GCGACCA CGGCCAGGCCCTTGCCCGCGTCGAGC TTTGCCGCGACCAGG  52 126
LTC53_RS19630 4521669 .. 4521679 +    -4  -3.56704   AAAAAATCCTTTGTA                 TTTC AAG GAAA                 TTGATTTCATCACCA  51 416
LTC53_RS19645 4524713 .. 4524744 + -16.5  -3.19246   TCACGTTCAAGTCGT      GGCCGGCCGCGGC GATCAG GTCGCCGCCGGCC       TTCACTTCGGCTTGG  81 187
LTC53_RS19690 NONE
        pyrF 4550372 .. 4550400 + -13.9  -5.60993   CGGTCGGATTTTGAA       GAGGCC-CGCGC CTTGGT GCGCGTGGCCTC        TTTTTTTGTCCGGCG 100 164
LTC53_RS19715 NONE
        plsB NONE
LTC53_RS19760 4569511 .. 4569553 +  -6.9  -3.67976   CCGACGGCAGCCGTG C-CGCGGTGGACCCGCGCGCG GCC TG-GCGCGTGTTCGCCGAGCG TTTCCACTTGCTGCG  61 344
LTC53_RS19770 4571174 .. 4571193 +  -3.4  -3.86015   CGCAGCAGCCTCCAC            CGCCACGG CCCG CCCTGGCA             TTTGTCAGGCAGCTG  56 59
LTC53_RS19780 4573059 .. 4573077 +  -5.8   -3.9461   CAGCGGATTTGGAGC             GGCGCGCG CTG CCCGCGAC             TTCTTCTTGCCCACA  63 438
LTC53_RS19795 4575966 .. 4576012 +   -13  -4.15044   GACCAGGACCATAAA GGGGCGAGAGGGAATATGCATT TCA AACGCATATATCCTCCGGCCCC TTTGTTGGCCGAGGA  85 178
LTC53_RS19830 4589409 .. 4589454 +  -8.4  -2.73681   CAGGCCCGCATCGGA CGCCAC-CTG-CAGGTCGT-GCT CGA AGCTGTGACCCGACAGCGTGGCG TGGTTGGCCTCGATG  52 511
        ttcA 4591780 .. 4591791 +  -3.6  -4.02108   CCCTGCGCACGGCGC                CGGG CCGT TCCG                 TTTCCTTCTGCTGGA  59 125
LTC53_RS19845 4592980 .. 4593035 +   -35  -3.09516   CTGGCTGGGTGCACT GTGGGAGGGACTTCAGTCCCGACTGC TGCC GGAGCCGGGACTGAAGTCCCTCCCAC TTCGCTCGTCGCGGC 100 284
LTC53_RS19850 4594326 .. 4594357 +  -3.6  -2.97029   CTGTCACCGTGCGCG      CGCGCATGAGCG GTATGCTG TGCGCATGCCCG       ATTTCCTTCGTCGCC  44 156
LTC53_RS19855 4595320 .. 4595347 +    -2  -4.36914   CGGGATCGGGCCGCG        TACGCA-AGACGT ATC GCGTCTATGCCTG        TTTTGTCGGCAGGCG  65 215
LTC53_RS19870 4598357 .. 4598375 +   -16  -3.49756   ATCGGCGGCACTGAA             CGCACCGC GGC GCGGTGCG             TTATCCTGCTTGTTC  83 42
        tatA 4598844 .. 4598862 + -10.3  -3.05384   AGGAGCTCAAGCGCA             GCCTGCA GGACG TGCAGGC             TTCGCTGCGCCAGGC  60 226
        tatC 4600031 .. 4600050 + -10.6  -2.74999   CACACGCAAAAAAGA            AGCGGCCC CGAA GGGCCGCC             TGCTGTTACCGATTC  60 110
        glyQ NONE
LTC53_RS19910 4605047 .. 4605061 +  -2.7  -2.62983   GCGGCGACCTGCTGG               CGACC CGTAA GGACG               TGATATGAGCATGCA  39 3
        glyS 4607329 .. 4607354 + -11.1  -4.96848   GGCGGATGAATGCAT         GTAGAGGCTGC GAAA GCAGCCCCTGC          TTTTTCTGTGGGAGC 100 48
LTC53_RS19925 4610561 .. 4610610 +  -4.1  -2.91264   CGGATGCGCCGACCA TGAATGGCGATTGACGGCGCCTGC ACG GCGTCCGCCG-CATAGGCCATTCG TCTGTGGATCGCCGC  43 205
LTC53_RS19930 4611911 .. 4611968 +  -9.1  -2.89447   TTCGTGCAGCGGCCG CGCCGA-GACGATCTCGGTGCTGCCGC GGCTCA GCTGCAGCACCGCC-TCGACCTTGGCG TCCTTGTCCTTGCCG  53 505
LTC53_RS19945 4616043 .. 4616085 +  -9.9   -2.9155   CGCGCCTTCTGCCAG TCG-CG-GCGGATGCTGCGTT CGG AGCGCTGCATCAGCTCGGCGA TCTCCTGTTCGGACA  57 283
LTC53_RS19975 4620260 .. 4620273 +  -4.5  -3.01712   GCGGGAATTCCACCA               CC-GCG CTG CGCCGG               TCTTGCGCGGCGAGC  45 126
LTC53_RS19980 NONE
LTC53_RS19985 4622110 .. 4622122 +  -4.8   -3.8211   CTCGGGCACCGCGTC                GAGC AGGTC GCTC                TTGTTGTGGATCCAC  60 475
        rpmH 4625518 .. 4625537 -  -7.8  -3.05384   GGGGCGGCGACGCAA            TCAAGCGC TAAG GCGCTTGC             GGCCCTTGGCGCGGC  53 6
        rnpA NONE
        yidC 4623124 .. 4623136 -  -4.8  -3.63515   CGGCATGGCGAAGAA                CGTC CTGGC GACG                CTGCAGGCTACAACG  55 173
        mnmE 4621460 .. 4621501 -  -9.4  -3.60818   GGAAAACTCTGGAAA GCGGCCC-ACGCCCACGCCA CGCG TGGCG-GTGCGTCGGGCTAC GCGCAAGCGGTGTCT  64 298
LTC53_RS19970 NONE
LTC53_RS19965 NONE
        mutM NONE
LTC53_RS19955 NONE
LTC53_RS19950 4615482 .. 4615514 -  -9.9  -3.14229   ATACCTGCAGGAACA     GCC-GCAGCCGCGCG CTCAC CGC-CAGCTGCAGGC     GCTGGCAATGATCGG  62 271
LTC53_RS19940 4613392 .. 4613418 -  -5.6  -3.54638   ACAAGCGGCGTTAAA         CGCGAGAGCTAC GGC GCGGCACACGCG         CCGTCCAACACCAGC  54 7
LTC53_RS19935 4611694 .. 4611730 - -19.4  -2.73681   CAGGTACTGCAAGCA    GCGAGGCGCTGCCGCG CATGC CGCGGCAACGCCCGGC    TGCAACTCAATACAG  93 32
         rep 4607515 .. 4607546 -  -2.8  -4.62069   GCTGCACTTGAAAAA      GCCGCAGCCTCCCCC GAA AAGGG-GGCCGTGGT      CCCGGTGGGAGAAGG  71 128
LTC53_RS19900 4601884 .. 4601912 - -10.4  -2.79183   TTCAGCTGCACGACA       GTCGTTCGC-GGCC GCC GGCCAGCGAAC-AC       GGCATGCGTGACCGG  57 106
LTC53_RS19895 NONE
LTC53_RS19890 4600029 .. 4600052 - -10.2  -5.13473   ATCACACGCAAAAAA          GAAGCGGCCC CGAA GGGCCGCCTG           CTGTTACCGATTCCC 100 46
        hemH NONE
LTC53_RS19860 4595190 .. 4595211 -  -2.9   -3.9461   GCTGCGGAAGAAGAA           CT-CCATGCG CAG CGCCCGGCAG           GCCCCCTCTCCCCGC  58 286
        xylA 4588634 .. 4588691 -  -8.2  -2.87136   CCAGCAACGACGACA TGGCCGCCGCGGC-GATCTCGGTCGCGC ACCG GCGCGGCCTGGACGTGCCGC-GCGACCT GTCGGTGGTCGGCTT  53 284
LTC53_RS19825 NONE
LTC53_RS19820 NONE
LTC53_RS19815 NONE
LTC53_RS19810 NONE
LTC53_RS19805 NONE
LTC53_RS19800 4575966 .. 4576012 - -15.2  -4.00038   GACCAGGACCATAAA GGGGCGAGAGGGAATATGCATT TCA AACGCATATATCCTCCGGCCCC TTTGTTGGCCGAGGA  88 57
LTC53_RS19790 4573957 .. 4573967 -  -2.4  -3.86015   TATTGGCGTGACAAA                 GCCG CTA CGTC                 AAGCCGAACCCGCTT  54 110
LTC53_RS19785 4572720 .. 4572750 - -15.4  -2.53449   AGACGCCGACAATAC       CGCTCCCTTCTCCC CCC GGGAGAAGGTGGCG       CGCAGCGCCGGATGA  73 304
LTC53_RS19775 4571032 .. 4571055 -  -4.4  -3.61715   CATGTCGTGGAAGAA          CGACTACCCG GTGC CAGGCCGCCG           CAACTATCCGCTGCT  51 216
LTC53_RS19750 4564404 .. 4564416 -  -4.7   -2.6834   AGGATCAGAACGAAC                CGCGG ATG CCGAG                CATGATGGTGCGGCC  43 2
LTC53_RS19745 NONE
LTC53_RS19740 4561437 .. 4561455 -    -8  -2.86164   TCGGCAACGACTACA             GCCGCGAG CAG CCCGCGTC             ACCAAGGGCATGACC  52 305
LTC53_RS19730 NONE
LTC53_RS19725 4560014 .. 4560029 -  -6.1  -3.66178   CCGGCGAACTGGAAA              GCCTG TGCCAG CAGGC               CGCGCAACGCCTGAG  57 338
LTC53_RS19710 4555129 .. 4555140 -  -3.6  -4.08706   TCTTCATGACAGAAA                CCCC TCCC AGGG                 CAGTAAACGGGTTTA  61 97
LTC53_RS19705 4552026 .. 4552056 - -17.5  -4.56597   CCCCGTCCGGAAAAA       CCCCACGCGCGCC GGTCG GGCGCGCGCGCGG       GCGATGCGGTGGATC 100 39
LTC53_RS19700 4550374 .. 4550398 - -10.7  -3.04144   GTCGGATTTTGAAGA         GGCC-CGCGC CTTGGT GCGCGTGGCC          TCTTTTTTTGTCCGG  62 61
LTC53_RS19685 4546505 .. 4546530 - -17.5  -5.42198   GCTCAAAAAACAAAA         CCCGGTCCGCC CGAC GGCGGCCCGGG          GATCAGAACTGATAG 100 28
LTC53_RS19680 NONE
LTC53_RS19675 NONE
LTC53_RS19670 NONE
LTC53_RS19665 4531035 .. 4531066 -  -3.7  -3.28712   TTGTCGCTGCCAGAA     GGACGCAGC-GGTCG CCAG CCACCTGCTG-GCCC      TCTTCAAACAGGTAT  47 87
LTC53_RS19655 4525440 .. 4525460 -  -7.5  -3.14132   GCCGCCGTCCAGCAA            GGCGCGG TACTGCG CCACGCC            GTCGGCGTAGTTGCC  54 467
LTC53_RS19640 NONE
LTC53_RS19635 4521423 .. 4521439 -  -5.8  -3.01791   ACTTGGCGGTGAAGA              GGCAAG GTCAG CTCGCC              TGGGGTCTCTTCACA  47 78
LTC53_RS19625 4519569 .. 4519595 -  -6.5  -3.85698   GTCGCCTTCGACAAA        GCACGCTCGCGC AACG GCG-AAGCGGGC         CATGTGATCGGCAGC  63 88
LTC53_RS19615 4517661 .. 4517683 -  -9.1  -4.36914   GCGGTTGGCAGAAAA           CTCGCCGCA TCGGC TTCGGCGAG           TCGATGCGCGCGGCC  83 116
LTC53_RS19595 NONE
LTC53_RS19590 4503792 .. 4503814 -  -6.9  -3.57144   GCGCCGATGGCGAAA           TCCACCGCA GTCGT TGCGGCGGT           CATCTCCTGACGGGG  58 60
LTC53_RS19570 NONE
LTC53_RS19565 4496018 .. 4496038 -  -8.9  -3.14344   CAGCTGCTGCAGGAA            CTGGACGGC GTC GCCAGCCAG            GCCGGGCAGGTCTTC  56 495
LTC53_RS19555 4490189 .. 4490222 - -10.3  -2.63301   GATAGGTGTAGAGGA     TGTACTTG-TCGCCGC TGC GCGGCGTGCAGGTACA     TTGCCGATACACCAC  57 66
LTC53_RS19535 4484400 .. 4484410 -  -3.2  -2.89564   GCGGTACTGGACATA                 GGAA ACT TCCC                 CTCCAAAGCGGGTGG  41 139
LTC53_RS19530 4482680 .. 4482704 - -22.9  -2.62616   GCATGCCGCACACGA          CGACGCCGGCG CAA CGCCGGCGTCG          CCCTGCCAGGAGCAT 100 61
LTC53_RS19525 4480895 .. 4480905 -  -2.4  -3.66356   ATCTTCAAGGGGAAA                 TCCG TAG CGGG                 CGGTCGGCAGGTATT  51 145
         xth NONE
LTC53_RS19515 4479637 .. 4479654 - -14.1  -3.65351   GCAGGTGTATGCAAA             CGCCCGG CCCG CCGGGCG              TTTGCGCTTGCGGCG  80 45
LTC53_RS19505 4478294 .. 4478304 -  -6.8  -3.39772   TCAAAGTTCGAAACA                 CGCT CTA AGCG                 CTGAGTCCAACCTGT  55 324
        rsmG 4476305 .. 4476335 -  -2.2  -3.53012   CCCCCGGGGCGGAAA       TCGGCGTCGGCGCC CCC GGCGGCTCAGCCGC       GCTCGACCACCACCA  48 18
LTC53_RS19485 NONE
LTC53_RS19480 4474506 .. 4474521 -  -3.2  -3.57462   GAGGTCATGCGCAAA              TCAGCG GCGG CGCTCA               GCCGACCTTGCCGCG  49 23
LTC53_RS19475 4473446 .. 4473494 -  -2.2   -4.7078   GCAACGACGCAAAAA GACCG-CGCATTTTGCCCTGGGCC GGT GGCCCGGGGCTACA-GTGTCAGAC CGCGGCACCGAAATA  70 20
LTC53_RS19470 NONE
LTC53_RS19465 4472255 .. 4472280 -  -6.7   -4.3467   ATGGGGAGAGCAAAA         GCGGTCGCGGC TGAA GCCGCGACAAG          ATTCCCGCCGGAACT  75 60
LTC53_RS19455 4469577 .. 4469600 -   -16  -2.62616   GCACGCCGCACAGCA          GCACCAGCGC CAGC GCGCCGGTGC           CGATGTGGTCGCACC  74 167
LTC53_RS19445 4467822 .. 4467833 -  -3.6  -3.21276   GCCGGCCCGACAACA                GCCG GGCA CAGC                 GAGCCGCGCATTATG  45 121
        rpmB NONE
        rpmG 4467201 .. 4467216 - -11.8  -3.78022   CCCAGACGCACGAAA              CCCGCC TTGC GGCGGG               TTTCGTGTCGACCGG  79 65
         cls 4465540 .. 4465560 -  -4.6  -3.61398   GCCCGCGGCTAAGAA            CCATCGCG CATGT CGCGGTGA            AGATCGCGCATGGCG  52 71
LTC53_RS19425 4464090 .. 4464106 -  -5.7  -3.28712   CTGCGTCCCCTACAA              CGCCAGC AAT GCCTGCG              CCTGCTGTTGCCCCT  51 3
        uvrD 4461347 .. 4461371 -  -7.8  -3.68351   GCTCGATGACCGAAA         CCGTC-GCCGC GTTC GCGCCGGACGG          TAGCCCGACGATGCG  64 488
LTC53_RS19405 4457530 .. 4457562 -  -4.8  -3.54129   CACACCCGGCGTAAA     CG-CCGCGCCTTGAC CCGG ATCAATGTGCGGACG      GACGCGACACCAGCG  52 12
LTC53_RS19400 4456609 .. 4456630 - -13.7  -3.01712   CCGCGGGGCCGAAGA           CCGCCGCTG GCCT CAGCGACGG            CTGGCGCATGGCGCA  72 418
LTC53_RS19390 4455541 .. 4455553 -  -4.7  -3.63744   CGCCCCCCGAAAAGA                GGGCC ATG GTCCC                GGTGGGAGAAGGGTA  55 506
        polA 4452197 .. 4452222 -  -2.6  -4.11692   GATTCATTCGCAAAA         TTCCAGGCAAC GCAGG GTT-CCAGGAA         CAACTGCTTTTTATA  58 405
LTC53_RS19375 4451080 .. 4451092 -  -2.6  -3.40403   GGGGCGCGAGGACAA                GGCA CGCAT CGCC                GAGCAGCTGCAACGC  47 359
LTC53_RS19345 NONE
        cydB 4442342 .. 4442360 -  -5.9  -2.70932   CGCCGCTGGCAAGCA             GGGCGTG CCGCT CACGCGC             TCGCGGCAAGCGCCG  47 58
LTC53_RS19335 4440858 .. 4440886 -  -7.3   -4.3767   GGACACGATAAGAAA        TCAGCGCCGCG TGATCGG CGCAGCGCCGG        CCCGCAGCTCAGCCC  75 34
        xanC NONE
LTC53_RS19310 NONE
LTC53_RS19305 NONE
LTC53_RS19300 NONE
LTC53_RS19295 NONE
LTC53_RS19290 4433887 .. 4433908 - -15.1  -3.33696   CCCGCCTGCAACTAA           CGCGCGCCG GCAT CAGCGCGCG            TCGCCGTGGCACAGC  78 16
LTC53_RS19285 NONE
LTC53_RS19280 4430968 .. 4430984 -  -4.3  -5.36441   CGCTCATACAAAAAA              GCTAGGC AGC GCGCAGC              ATCACCGTGGCGCGG  93 10
        fabG 4429634 .. 4429648 -  -3.4  -3.28712   CTGGGGCCGCCACAA               CGACGC GCA GGGCCG               TCCCGAAACCGATGC  47 318
LTC53_RS19250 NONE
LTC53_RS19245 4421538 .. 4421560 - -17.7  -3.20723   GCGGCAGTAAGGCAA           GCGGCGGCG CCGTT CGCCGCCGC           GCCGGCGGGCGCGGG  86 167
LTC53_RS19215 4415528 .. 4415546 - -10.2  -3.14132   CCGGCTGCGCAGCAA             GGCGCAGC GCC GCTGCGAC             GTCGCCCTGCCGCTG  60 61
LTC53_RS19205 NONE
         zwf 4411032 .. 4411054 -  -6.8  -3.29043   AAGTCGCTCCCACAA           GGGCGTCCGC AGC GCAGTCGCGC           TACGAGGTCTTTTGT  54 125
LTC53_RS19195 4407881 .. 4407891 -  -2.4  -2.62184   TTCTTTTGCACATCA                 CCGC TGC GCGC                 AAAAACCGAACACGC  38 54
LTC53_RS19190 4406998 .. 4407032 -  -4.2  -3.67976   CGCACGAAGCCGAAA     CCGCGCTCCTCG TTCCAGCAAGC CGACGACCGCGG     CGTTGATTCCCGGCA  54 425
LTC53_RS19160 4398361 .. 4398371 -  -4.6  -2.75064   GTGGTGACCGAACCA                 CCGC TAC GCAG                 CCGAGTATAGCCAGC  43 241
LTC53_RS19155 4397541 .. 4397554 -  -4.5  -2.70932   TTCTTCGGTGAATCA               GCTAC CCAC GCAGC                GCTGCGCGATTCCTG  43 280
LTC53_RS19135 4393749 .. 4393762 -  -9.5  -2.91997   GTCCAGATACAAGGA               GCGGC TTCA GCCGC                GACGAACGCAGCGCG  56 122
LTC53_RS19130 4392355 .. 4392380 -  -8.2  -3.28924   GATTTTCGGCGAGAA         GACCAGCGCA TGCAAC CGCGCGGGTC          TGTTGGCGGCGCTGC  59 178
LTC53_RS19120 NONE
        zapE 4389485 .. 4389540 -  -6.9  -3.37612   TTTAATTGCAAGCAA TTTC-TTCCAGCCTGCACCGATCGGCA GGTA CGCCG-TCGGCCCAGACAGGAATGCAA CGTCTGCCGCGACGA  56 146
LTC53_RS19105 4388380 .. 4388406 - -19.4  -5.62045   ACAGACAACAAAAAA         CCCCGCCGCGCA GGA CGCGCGACGGGG         GCTTCGGACACGCCG 100 47
LTC53_RS19100 4388113 .. 4388123 -  -6.8  -2.72991   TCACATCCGGAATGA                 TCCG AAC CGGA                 TCGTCGCCGGCCCGT  48 0
LTC53_RS19095 4387894 .. 4387914 - -12.5  -4.65895   TGTGCCAGCGAAAAA            CGTCGCGCA TCC TGCGCGCCG            CCCTTCAGGTATTCG 100 30
LTC53_RS20105 4386869 .. 4386888 -  -2.7  -4.07568   CTGCGGGCGGCAAAA            CCCTGCG AGCGGG CGCCGGA             TCGCGCCTGGAGCGG  59 124
LTC53_RS19090 NONE
LTC53_RS19085 NONE
LTC53_RS19080 4382051 .. 4382063 -  -4.7  -3.62597   CTGATGTCGGAAGAA                GCCCG GCG CGGGA                AGGTGCGACGCCGGC  55 74
LTC53_RS19075 4381504 .. 4381522 -  -7.4  -3.17486   AACAATGCGCATGAA             GGCTCC TTATGCT GGAGCC             TCCATTGGACGACCT  54 191
LTC53_RS19070 NONE
LTC53_RS19060 4378388 .. 4378407 -  -3.4  -3.75897   AATCGGGAATCGAAA            GCACGGGC AATC GCCTTTGC             TCTGTCTAACCCACG  56 73
LTC53_RS19045 NONE
LTC53_RS19035 NONE
LTC53_RS19030 NONE
LTC53_RS19025 NONE
        purU 4366498 .. 4366519 -  -8.7  -3.22223   CAACGCGACGATGAA           CGC-CAACGC GGC GCGCTGAGCG           ACCGGGATGACCGGC  58 63
        dusA 4361379 .. 4361422 -  -7.5  -4.17089   CGGAAACGTTCAAAA GTTGTGAAACCG-GATGCCG GGCAG CGGCACCGCGATTTCGCAAA ATGGAGCCAAATTCT  74 312
LTC53_RS18995 4360940 .. 4360962 -  -4.8  -2.57564   GCAGTGTGTGACAAG           CTGAACCAGA CTA TCCAGGTCAG           GGGTTATCGTCGCGT  42 22
LTC53_RS18990 4360121 .. 4360134 -  -4.5  -3.33696   CGCGCCTGCAACGAA               CGC-GG GCG CCAGCG               CTTGTACCACTTGGG  49 93
LTC53_RS18985 4358522 .. 4358543 -  -8.7  -3.20709   ACAACACCAGCAATA           GCGCCAGCAG CAG CCGCTG-CGC           GGTGCGCAACGCACG  56 228
LTC53_RS18975 4355772 .. 4355824 -  -7.7  -3.05384   GCTGTCGGGACTGAA GTCCCTCCCACAGTG-CACCCAGC CGGCTC GCTGCAAGTCATTGTGGGAGCGAC TTCAGTCGCGACGCG  53 151
        birA NONE
LTC53_RS18955 NONE
LTC53_RS18950 4351285 .. 4351297 - -10.5  -3.03635   GAAACCGTGGCAACA                CCCGC GCT GCGGG                CCGTCGCAGTCTACC  60 115
LTC53_RS18945 4351023 .. 4351073 -  -3.2  -3.96216   GCTCCAGCGAAATAA TG-TGCGCCA-GTCTAG-CGAGCCG TCCG CGGCGCGACCCGCCGCGGCGCAGCA GGCGAGCGCAGACGG  58 143
LTC53_RS18935 4349740 .. 4349753 -  -2.3  -3.00418   GATGTATCAAACAAG               CCGAA CCAC TGCGG                ACGATCGATCAGCAC  41 34
LTC53_RS18930 4349486 .. 4349505 - -12.8  -6.10489   AAGCGCAAAAAAAAA            CGGGCCGG CAAG CCGACCCG             TCTTTCGTCACCGAG 100 49
LTC53_RS18920 4346969 .. 4346985 -  -2.2  -2.93089   CATGATCGGAAATTA              TTCGGC CAGAC GCAGAA              GGGATGCGTGCAGGA  40 6
LTC53_RS18915 4345926 .. 4345939 -  -2.3   -3.3514   ATCCAGACGCGAGAA               GCGCA GGCA CACGC                TGTTCCCATTCCCGA  46 59
LTC53_RS18910 4343712 .. 4343745 - -10.2  -2.75252   AGCACCGCAACACGA     CACGCGCGGCACGC TGTTGT GCATGCGGCGCACG      CGCCCTGTGCGCGAC  57 456
        yedA NONE
        rarD 4341807 .. 4341819 -  -6.9  -3.63627   CTCCTACAGGTCAAA                CGCAC ACT GCGCG                GCCGCGATTACCCGC  61 33
LTC53_RS18875 NONE
LTC53_RS18870 4335494 .. 4335542 - -16.5  -3.68024   TCCTTCAACAGATAA CCGCCGACGCCGGCGTCCAGCGC GCG GCGCAGGAAGCCGGGACGGGCGA AGGTGGTGACGATGA  88 98
LTC53_RS18810 4321743 .. 4321754 -  -5.8  -5.24129   GTTGCTCATAAAAAA                CCCT CCTC AGGG                 TGTCAGTGTTTATGT  89 202
LTC53_RS18805 NONE
LTC53_RS18800 NONE
LTC53_RS18795 NONE
LTC53_RS18790 4318271 .. 4318294 -  -5.1   -5.5112   CCGAGCAACAAAAAA          GCGCCCGGC ATCGAA GATGGGCGC           TGGTGCGCCTGAGTG  95 205
LTC53_RS18785 4317671 .. 4317701 - -22.7   -2.8474   CGGCATCCACAACCA       GCGCCGATCGACG GGACA CGTCGATCGGCGC       GATTGCGCGGCGCCT 100 39
LTC53_RS18775 NONE
LTC53_RS18770 4315086 .. 4315100 -  -2.1  -5.42514   CCAGAAACCAAAAAA               TGCTG TGACG CAACA               ATGCTGACGCTGCCG  90 436
LTC53_RS18765 4312166 .. 4312181 -  -3.9  -3.86194   AACGTGGCCGACAAA              CGCGG CTACAC CCACG               CCTTCAGCACCTTCG  58 316
LTC53_RS18755 4308735 .. 4308784 - -12.9  -3.05384   CGCGTCGCGACTGAA GTCGCTCCCACAATGCATTGCGGC AAG GCTGGC-TGCATTGTGGGAGGGAC TTCAGTCCCGACTGT  70 333
LTC53_RS18745 NONE
LTC53_RS18735 4303886 .. 4303903 -  -3.3  -4.23758   AGCGGACATGGAAAA             CCCCCTG GATG CAGTGAG              ACACAGGCAGGCGGC  63 229
LTC53_RS18730 4302992 .. 4303006 -  -9.2  -3.06183   GGTAGGCGGAGGGAA               CCAGCG TTT CGCCGG               TGGCCCGGTTCGGGA  57 296
LTC53_RS20100 4300081 .. 4300096 -  -3.2  -3.57144   GCCTGGATCCGGAAA              CCGC GTTCACCT GCGG               GATGATGCACAACAT  51 517
LTC53_RS18710 4298174 .. 4298193 -  -6.4  -2.94045   CTACCTGAAGAAGGA            GGACGAAG ATGG CTTCGTCG             AATGCAGCGACCGGG  47 502
LTC53_RS18700 4296938 .. 4296991 -  -8.2  -3.87354   TAAACGCACACGAAA TGCGG-GGTTGCCATGT--CCGCGG TCGGTCC CCGCGGTGACCCGGCATCCGCCGCA CGCCGGCGGGCGGCG  68 45
        glpD NONE
LTC53_RS18690 NONE
        glpK 4292351 .. 4292380 - -12.1    -2.752   ACCTCTAGACACAAG       CGGCTTCAGCCGC GACA ACGTCCGAAGCCG        GAAGGCCCGCCGCTG  65 218
LTC53_RS18680 NONE
LTC53_RS18675 4289451 .. 4289499 -    -8  -2.86432   TCGAAGATGACCAGA TCGTAGCGG-CGCATGCGACGGCA GCA TGCCGCAGCA-GCGGCCGCGCCGC CAGCGCGGCGGCGCG  52 452
LTC53_RS18665 4288742 .. 4288754 -  -3.3   -3.2653   TCAATCATAAGTGAA                CAGCA CGT TGCGG                TGCAGCATTGGGCGG  46 91
LTC53_RS18660 NONE
LTC53_RS18655 NONE
LTC53_RS18650 4285860 .. 4285881 -  -5.1  -2.55074   TGGAAGTGGAAGGCA           GGCGCGGTCA GTT CGACCA-GCC           GCCGTCGATGATGTG  44 11
LTC53_RS18645 4284903 .. 4284926 -    -3  -5.40873   AAGAGAAAAAGAAAA          TGCAGTGAAG AGCC CCTCTCTGCC           ACGGGACTTCCTTCG  90 71
LTC53_RS18640 4283460 .. 4283478 -    -3   -4.5464   GACAGACAAGCAAAA             CCGCCAAG GTT CCTGGCAT             GGTTCGTCGCGGCTG  69 91
LTC53_RS18625 4280027 .. 4280056 - -10.5  -2.52464   CCGTCGGCGAATGGA       GGGCGGCAGCGCC TGGC GGCGGGGCCGGCC        GAAATTGTAATTACG  56 406
        mdcA NONE
        mdcC 4277940 .. 4277964 -  -4.9  -3.14931   TTCAGCCGCGACCAA          CGGAGCCGA ACTATCG CCGGCTGCG          GACACTGTCGCGGCT  47 93
LTC53_RS18610 4276828 .. 4276851 -  -2.3  -3.06815   AGTTGCTGCAATAGA          GGAGTCAGT TCCATC ACGGGCTCC           GGTCGGCGACGGCGG  41 15
        mdcE NONE
        mdcG 4275358 .. 4275378 -  -7.5  -2.62184   GCCGCCCCTACAGGA            GCCAGCGAA TGA TCCGCTGGG            GCCACTGTAGGAGGG  50 138
        mdcB NONE
LTC53_RS18590 NONE
LTC53_RS18585 4271887 .. 4271908 - -15.1  -4.64844   GCCACACACACAAAA           GCGCCGCCC CGAG GGACGGCGC            TTTTTTTGTTCGATG 100 94
LTC53_RS18575 4270263 .. 4270285 -  -3.2  -3.53224   TAGCGCGTGTGGAAA           CGTAGCGCGC CAT GCTGGCTTCG           CGTACTCGAATCAGC  49 100
LTC53_RS18565 NONE
LTC53_RS18560 4267179 .. 4267212 -  -7.5  -3.27022   CGGAGGGGAGAGGAA    GGC--GGCCGT-GCGC ATCCA GCGCGACGGCCATGCC    TACCTAGGAGTGCCG  56 82
LTC53_RS18555 NONE
LTC53_RS18550 NONE
LTC53_RS18545 4261829 .. 4261844 - -11.8  -3.06183   GGGACCGGCAGTGAA              GCGCGG ACCA CCGCGC               GTGCGGCGCAATATA  65 168
LTC53_RS18540 4259302 .. 4259340 -  -9.3  -3.39895   GCCGCGATGAACGAA   GCGGCGGCGCTGAGCGC TGCGG ACGGACGGCGCCGGCGC   CGATGGCCCGGCACG  63 80
LTC53_RS18530 4256561 .. 4256605 -  -5.4  -3.14132   CGTGGCGTGGATGAA CGCCGACACTGCGCCGCGGC AGACA GGCGCGGACCTGTAGCAGCG GTTTCGGCCGCGACC  49 221
LTC53_RS18520 4253826 .. 4253837 -  -3.6  -3.17392   GACGGCGCAACGCAA                CGCG CAGT CGCA                 ATCCATCCGCACCCA  45 53
LTC53_RS18500 4247884 .. 4247914 -  -6.7  -4.18018   GCGCCTGATCGAAAA      GCGCCAGCAGCTGC GCGT GCCGC-GCGAGCGC       ATCGCCGGTTTCGAA  69 424
LTC53_RS18485 4244518 .. 4244550 - -13.5  -4.45807   CAGTAAAATAAATAA      TACCCCCGTGTGAAG CGG CGTCACACGGAGATA      GGGATAGCGAATTCA 100 95
LTC53_RS18475 4241953 .. 4241963 -  -2.4  -3.47349   CGTGGAAACGCACAA                 GCTG CTG CCGC                 TGTCGCTGAGCTTCG  47 163
LTC53_RS18450 4237499 .. 4237522 - -11.6  -3.78934   CTTCGGGCAGAACAA          GGGCGCGGCC ACAA AGCCGCGCCT           TTTCTTTTGCCGTCG  79 277
LTC53_RS18440 4232789 .. 4232807 -    -8  -3.13899   AAGCGCGTACTAAGA             CGGCTGCG GCG CGCCACCG             GGTCCCGGGTCCCGA  54 1
LTC53_RS18435 NONE
LTC53_RS18430 4230319 .. 4230347 - -14.5  -2.53382   ATGACTGGCAAGTGA        GGCGCAGCGCCTG AAG CAGGCGCTGCCAC        ACGTTCCTGTAGGAG  71 136
        hppD 4228588 .. 4228598 -  -4.6  -3.90112   GTCCCGCCAATCAAA                 GCAC CCC GCGC                 TTCATCTGGTCGCGC  61 10
        hmgA 4227115 .. 4227133 - -11.6  -3.05463   AGGCGCCTGAGCGAA             GCGCGCGC TCA GGGCGCGC             GGAAGTTGCGGCGCA  65 15
LTC53_RS18405 4225122 .. 4225143 -  -4.3  -3.23216   TCCCACCAGCACCAA           GCCGATCGC GCTC GCCATCGCC            CATCCTCTCACCATT  49 480
LTC53_RS18400 4224003 .. 4224043 -  -6.9  -3.44622   CATGCCGACAAGGAA GGCTTGC-CGC--CG-CCGGC GCA GCCGGACGACGCGCGCTAGCC GCGCTGGCGCAGCCC  56 171
LTC53_RS18365 4216760 .. 4216774 -    -7  -2.57931   TGGATGTTCTACAAC               CGGCTG TCG CGGCCG               CTGGGCTACGGCATG  48 288
LTC53_RS18350 NONE
         rpe NONE
LTC53_RS18340 4213431 .. 4213441 -  -4.6  -2.62263   ACCTTCCCGAGATCA                 GGCC TGC AGCC                 TAGCCGGCGCCGGAT  42 316
        yegS 4212458 .. 4212491 - -10.2  -2.62616   CCACTCTTCAGACCA     GCGACCGCCGCGTGG CTACC CCACCCGGCCG-CGC     AGCAACGCCGAGTCG  57 7
        trpE NONE
LTC53_RS18325 NONE
LTC53_RS18320 NONE
        trpD 4207750 .. 4207793 -  -5.9  -3.36991   CAGCATCGGCAAAGA GCATGCGCAGCGCCGG--CGGC CTT GCCGATCCGCCGC-GCTCAGGC GGGGAAGCGCGCTGC  55 20
        trpC NONE
LTC53_RS18305 4205991 .. 4206016 -  -5.3  -3.86194   AATGCGGCCGAGAAA         CGCCATTTCGC CTGG GCGTACTGGCA          ATTCGAGGGCAGCTT  60 158
        speD 4203042 .. 4203065 - -16.8  -5.65177   ATAGGGACAAAAAAA          GGCCCGATGT CTGC ACATCGGGCC           GCCGTCAGCAGGGGT 100 89
LTC53_RS18280 4202461 .. 4202495 -  -3.5  -3.14132   GGCCGCCTCGACCAA    TTGCAGCACGCCGGCA ACCT CGGCAGCGTGCTG-AC     CCGGCTGGCGATCGC  45 220
        rplM NONE
        rpsI 4199797 .. 4199821 - -18.7  -5.96894   AGCCAAACAAAAAAA          GAAGGCCGATC TTT GATCGGCCTTC          TTTTTTTGTTTGGCG 100 412
LTC53_RS18245 4198783 .. 4198831 -  -6.7  -2.65815   TGCAGACGTACACGA TGGCGTTG-GCGGCGAACGGCGC GGACT GCGCCTGTCGCCATTCAAC-CCA AAGTGAGAATGGTTG  47 54
LTC53_RS18240 4198483 .. 4198507 -  -2.8  -3.54424   CGCTAGTCTTGGAAA         GCG-CAGACTC TAGC GAATCGGACGC          CGCGGTGAAGGAACG  49 89
         bfr 4197800 .. 4197812 -  -4.7  -3.85698   GCGCCGCGCCATAAA                CGGCC CAC GGCCC                CCTGCCGGAGCCCCC  58 201
LTC53_RS18215 NONE
LTC53_RS18210 NONE
        erpA 4190880 .. 4190901 -    -3  -2.84841   AAGGCGAAGCAAGCA          GGCGTCA-GC TCGA GCATG-CGCC           GCAGGGTGCAGGCAA  41 69
        nudC NONE
LTC53_RS18195 NONE
LTC53_RS18175 4185989 .. 4186025 -  -9.9  -3.15861   CAGCATGTGGAGCAA    GCGCGACTCGCGGCTGC GGC GCATGCGCGTGCCGCGG    CGCTTCCGCGCGCAC  60 193
LTC53_RS18160 4181415 .. 4181427 - -10.5  -3.39327   CCGCGACATGCACAA                CGCCG ACG CGGCG                CTGTCGGTGGCGCTG  65 408
LTC53_RS18140 4174963 .. 4174980 -  -6.3  -3.16564   GCCGGACGCCAGCAA             CTGCACCG GCA CGGTG-AG             CGCCTGCGCATCGCC  51 357
LTC53_RS18130 NONE
LTC53_RS18125 NONE
LTC53_RS18120 NONE
LTC53_RS18115 4170997 .. 4171022 - -17.7  -5.28778   ACCACTGATAAAAAA         GCCGCCTTTTC TGCA GAAAAGGCGGC          TTTTTCATTTCAATC 100 159
LTC53_RS18095 4168096 .. 4168118 -  -7.7   -3.4252   GGCCACGCACGACAA          CGCCGAGCGC AATG ACG-TCGGCG           TGCGCCTGGCGGTGC  58 321
LTC53_RS18085 NONE
LTC53_RS18080 4165494 .. 4165509 -  -3.9  -4.12188   CCACTACCTGGAAAA              GCGCC TGGCCG AGCGC               AAGAACAAGTCGATT  63 470
LTC53_RS18060 NONE
LTC53_RS18035 4156349 .. 4156378 -  -3.4  -3.03243   AGGGATTGGCCAAGA       GCGGGATTCGGG GGAGAT CCGGGATCGCGC        CGCGGCGAGCGCAGC  42 112
        groL 4154590 .. 4154609 -   -15  -5.61596   ACGCGCATAAAAAAA            GCCCCGCA TCGC TGCGGGGC             CCTTTTCACTGCGGA 100 68
LTC53_RS18025 4152885 .. 4152908 -  -4.4  -4.07568   TCTGCGTCCGGAAAA          CCGATGCGGC GGCG GCGGCACCGC           GCTGAACCGCCACGC  62 245
LTC53_RS18020 4152245 .. 4152294 -  -7.8  -3.14132   CTGTCCTGGCACCAA CGCTGGCTGGA-C-ACCGGCAGCA TGCA CGCGGCGGGTTGACCCATCCAGCG TGCTGCGCAGCGCCA  54 276
LTC53_RS18010 4148073 .. 4148100 - -22.8  -5.81412   GCCAGGCAAAAAAAA        GCCCGCTGGCAG CGAA CTGCCAGCGGGC         TTTGCTCCCTCCCCC 100 349
        glnE NONE
LTC53_RS17980 4140173 .. 4140186 -  -2.3  -3.63367   CGTGGGAACAAAAAT               GCGCA GGGT CACGC                GTGCAAAACCAGATC  51 20
LTC53_RS17975 4138149 .. 4138199 - -22.6  -3.54424   CGGCACCTGCGCAAA CGCAACGGGGCCGCAGGCGCGCC GGCATT GGCGCGCATACGGCCCCGT-GCT TGCCTTCCCGCTAGA 100 41
LTC53_RS17965 NONE
LTC53_RS17960 4135599 .. 4135618 - -16.4  -4.54727   GGCCGCAAACGAAAA            CGCCCGCC GAAA GGCGGGCG             TTTCCATCGAAGGCA 100 83
        aceE 4129602 .. 4129649 -    -2  -3.05844   CCGGCCAGGGGAAGA GCGCCCTCTTCCG-C-TGCGG CCCCCTTTC CCGCGTGGCGGGAGAGGG-GC AGAGCGTTATTGCCT  41 51
LTC53_RS17935 4128993 .. 4129017 -  -7.1  -4.46212   TCCTCCAGTAGAAAA          TCAGCGGCATC ATC GATGCAGCTTA          TTAAAATTTCCATAT  77 182
LTC53_RS17930 4125093 .. 4125141 - -21.3  -2.87132   TCGCTTGCCGAGATA CAGGGCCAGAGAAAATATGCGTT TCA AACAAATATTTCCTCTGGCCCCG TTATTTAGTGTCAGG 100 136
LTC53_RS17925 4122956 .. 4122978 -  -3.4  -5.24129   CTCGGGCACAAAAAA           CCCACC GGTTTGTCGGA GGTGGG           TGCCGCTACGTGAGG  83 151
LTC53_RS17920 NONE
LTC53_RS17915 4121200 .. 4121219 -  -4.4  -3.09516   CTGCTCAGCAGTTAA            TTC-AATGC TGG GCATTCGAA            TACCGTCCCTGGCGG  47 141
LTC53_RS17910 NONE
LTC53_RS17905 NONE
LTC53_RS17900 4119069 .. 4119098 -  -5.6  -3.53811   TCCATTGCCGGCAAA       CCTGGACGGCCA CGACGC TGGCCGGACAAG        CTGCATGCCGACAAG  54 354
LTC53_RS17880 4116898 .. 4116912 -  -5.6  -4.54727   TGGCCCAAATCAAAA               GGCGGC GGC ACCACC               TCCCGCACAGGAACT  74 78
LTC53_RS17875 4115659 .. 4115715 -  -5.9  -3.54424   GCCGACGGCCGGAAA TC-GCAGGCGCAACGGCCATGCGCCGCCG ACT CGGCAGC-C-CGGC-ATGGGGCCTGCCGA GCGGGCGCAACCTTC  56 44
LTC53_RS17865 4114153 .. 4114180 - -13.4  -3.17723   GTACCGCGAACTGAA        GGTCACCCTGCC CAGC GGCAGCGCGACC         AGCTTCACCAAGTAC  72 406
LTC53_RS17855 4110262 .. 4110286 -   -10  -2.52464   CGCTGGCCGAACGCA         GCGC-CGGCAA GCCG CTGCCGCGCGC          GATCCTGCCCGGCAT  55 325
LTC53_RS17840 4108350 .. 4108374 -  -5.6  -5.07567   CGACATCGGAAAAAA         GC-GTCGGGGC TGAA GCCCCGCCTAC          AGTGGATTCAACCGG  85 22
LTC53_RS17830 4106195 .. 4106228 -  -7.4  -3.44149   CGACAACATAGAAGA    TGCGACGCGCACGCGC CAGA GCGC-TGCGC-CCGCT     TTGCGCGCGGAAATC  59 75
        cycA 4104671 .. 4104706 -  -8.3  -3.17075   CGCGGCTGAAGCGAA   CGTCAACGG-CGCAGGC AAGG GCC-GCGGCCGCCAACG    CCGCGCCACCGCGCC  56 93
LTC53_RS17820 4103675 .. 4103699 - -11.3  -3.14132   CTCGCGGCTTAGGAA          CAGCGGCCGCC GAC GGCGACCGGCG          CGCTTACACCCAGCC  64 29
LTC53_RS17810 4101877 .. 4101916 -  -3.5  -4.24948   GCAGTACAGCGAAAA GGCCTTCCTGCTGCCGCGC CACG ACATGGC--CTGGAAGGCC  TACGTGGACCAGTGG  65 286
LTC53_RS17800 4099935 .. 4099952 -  -5.5  -4.10429   AAGCAGCCCGGAAAA             CGCCACCG TTA CGGCG-CG             CACGCCGCCAATTTC  64 16
LTC53_RS17790 4097220 .. 4097271 - -20.9  -3.60296   GACCTGTACGCGAAA CCGGCCGT-CGCCGCGCCGC-CCGC AGCG GCGGCGCAGCGCCACGCACAGCCGG AGCCGGCCACGCCCT 100 153
LTC53_RS17760 NONE
LTC53_RS17755 NONE
LTC53_RS17750 4085906 .. 4085940 -  -4.3  -2.65279   CAATGCCGAAACCGA    CTG-GGCGCTCAAGTGC GCT ACAGC-GAGCGCCACAG    CGTGGCGTGCGCCGC  42 299
LTC53_RS17745 4084813 .. 4084842 - -13.5   -3.7108   ATCGGCAGAGCGAAA       CCGGGGCGCTGGC GACG GCCAGCACGCCAG        CCGCGACCGCAGCGC  79 197
LTC53_RS17740 NONE
LTC53_RS17735 NONE
LTC53_RS17730 4081780 .. 4081793 -  -5.9  -4.19238   CGCCGAAGGCGAAAA               GACCG CCTA CGGCC                AGCGCATTCCCGGCT  69 444
LTC53_RS17670 4068172 .. 4068198 -  -5.7  -4.15044   CGCGGCGGCAACAAA        GCCCACGCGCCG CCAG CGGC-CGGCGGC         CCGCTCAATCGGGCC  64 30
LTC53_RS17665 4064736 .. 4064753 -  -9.1  -3.12327   CGCGCAGATCGAATA             CCGCTAC GCCC GCAGCGG              CCGCGTGCGGATCAG  56 325
LTC53_RS17595 4051309 .. 4051335 -  -5.1  -3.15544   CTTCACCGCGATGAA        CGACTCAGG-CGG TCG CCGGCCCG-GCCG        GCTCAGGCGCGGCGC  49 3
LTC53_RS17590 4049879 .. 4049907 -    -3  -4.66537   TTTGCCAAGACAAAA       GTGACT-CGCGCC GGCA GGCGCGAAAGCTC        TTGCTCTTGCTTGAG  71 100
LTC53_RS17585 4047838 .. 4047849 -  -7.2  -2.55351   CTGGCGCAGATCAAG                GCCG GCGG CGGC                 AGCGCCAAGCTGACC  48 311
LTC53_RS17570 4044523 .. 4044540 -  -3.4  -3.92178   AGCATGGGAAGCAAA             GCATCCG CCAGC CGGA-GC             CGTATCAGTCATCGC  58 84
LTC53_RS17565 NONE
LTC53_RS17560 4042700 .. 4042720 -  -2.3  -5.03715   ACTACCTGGAAAAAA            CCGCCTGAG CGC CGCCCGCGG            CCGCCGGCTCAGGAC  79 34
LTC53_RS17550 4041707 .. 4041764 - -14.1  -2.63549   GACCGCGAAGAAGAG CTAGCGCTCAGGCCGCCGTCCGGGCCGC CGTGC GCGGCCCGGAC--CGGCACG-GCGCACG CGGCGCCTAGAACGG  69 32
LTC53_RS17520 4036487 .. 4036503 -  -5.7  -4.09685   CCCCACTGCGGAAAA              GCGCTCC AGC GGCGCAC              CTACCTGTCCACCGC  64 64
LTC53_RS17500 4032609 .. 4032637 -  -7.3  -3.37344   CTCCTAGCGAAGGAA        CGGCACAGGCG ACGGGAG CGCCTGGGTCG        GGCCAGTCTAGGAAG  56 115
LTC53_RS17495 4031954 .. 4031982 -  -6.6  -2.94258   AGGAAGTGAAGGAGA        CGCTGAGCCTGC CGATC GCCGACTGAGCG        CAAGCCCCTCTCCCG  48 254
LTC53_RS17485 NONE
         alr 4028980 .. 4028990 -  -4.6  -3.53444   CGACGCCCCTGCAAA                 CGCC TGC GACG                 CTCAGCCGCCCAGGT  52 27
LTC53_RS17470 NONE
LTC53_RS17465 4027082 .. 4027126 -  -7.1  -3.53091   AGTTTGCTCTGGAAA CGGCCTGCGGCGGCGGAG-GCG ACAG CGCGCTCCGC-GCCAACGGC-G TGATGACGGATGCAC  58 127
LTC53_RS17460 4025052 .. 4025072 -  -5.3  -3.57561   GCTGAACGCCGGAAA            GCGCGGC TACTGCT GGCGCGC            GAAACGCACCGCGGA  54 11
LTC53_RS17450 4022818 .. 4022838 -  -3.1  -4.12188   GCACTATCCGGAAAA            CACCGGCAC CGG ACGCCCGCG            CTACCGACTGCACCA  61 446
LTC53_RS17440 NONE
LTC53_RS17435 4020487 .. 4020502 - -11.8  -3.54741   CAGCACTGCGGCAAA              CGCCGC ATCC GCGGCG               GGCGTGCCACGATCC  71 339
LTC53_RS17415 4017288 .. 4017311 - -13.2  -3.54459   GGAAGGGGGCGCAAA          GCCTAGCAGGC CAG GCCTGC-AGGC          GTTATTCCATTCGAT  77 76
LTC53_RS17410 NONE
LTC53_RS17405 4015390 .. 4015402 - -10.5  -4.63486   ACGTGGGGAAGAAAA                GCGGC CAG GCCGC                CATGCAGGCAAGCTA  93 178
LTC53_RS17400 4014540 .. 4014570 -   -14  -2.52464   GCCGGCCCGAAGGCA       GGACTGCCGGCGCT CAG AACGCCGGCAATAC       CGCGCCCTGGTACTT  68 8
LTC53_RS17385 4012096 .. 4012109 -  -5.9  -2.73364   GGTCTACGTCAAGCA               GGCCG GCAG CGACC                TGGACGGTGCGCGCA  46 136
        aceF 4009421 .. 4009441 - -13.9  -2.60615   AGGTGGGGGAAACAC            GGGCCGCGC CGG GCGCGGCGC            CTTTGCGGTGGGACT  69 40
        lpdA 4007469 .. 4007500 - -24.6  -3.85698   GTGGCGCTGTAGAAA      CGCAAAACCCCGGC ACGG GCCGGGGTTTTGCG       CTGCCAACAGGCCTG 100 44
LTC53_RS17360 4005756 .. 4005773 -  -5.5  -2.62192   CGTGATTCAATCAAC             GTCTGGC CAAC GCCAGAA              CCTGGAACATCAGCC  44 3
        atpB 4004866 .. 4004880 -  -2.8  -3.28712   GGTTTTCTCCGAGAA               CTAAAG TTG CTTGAG               GATGGTGAATCGAAC  46 74
        atpE 4004452 .. 4004501 -  -9.1  -3.65351   GTACGCTCAGCCAAA GTGACGGGGTGGACGCGC-CGCCA TCG CGGCGGGCGCGTCCGAACCTTCAT CCGCAGCGGGGCGGC  68 75
LTC53_RS17345 NONE
LTC53_RS17340 NONE
        atpA NONE
        atpG NONE
        atpD NONE
LTC53_RS17320 3998527 .. 3998544 - -14.1  -4.90266   TCCATCAACGAAAAA             CGCCGGC AATC GCCGGCG              TCTTCGTCGCGGTCG 100 69
LTC53_RS17315 3997560 .. 3997613 - -31.2  -2.62983   GGCACCCCTATAGGA GCGGCTTCAGCCGCGACGGGCG TTACGGATCG CGCCTGTCGCGGCTGAAGCCGC TCCTACAAAGTGCAC 100 136
        glmU NONE
LTC53_RS17300 3994517 .. 3994543 -  -6.5  -3.29263   ACATTTTCGGTAGAA        CCCGTCG-CGGC TGAA GCCGCCTACAGG         ATCCACACGCGCTCA  53 38
        glmS 3981912 .. 3981929 -  -6.9  -3.05384   TGCGTTGGCAGCCAA             GGATGGC ATCT GCCAGCC              GTCGCGGCGTGCCGT  51 53
LTC53_RS17245 3981076 .. 3981090 -  -9.2  -3.14132   GGCGTGGTCCACGAA               CGCGCC TTC GGCGCA               ACCGCCGGCTATCGG  56 302
LTC53_RS17225 NONE
LTC53_RS17220 3974611 .. 3974634 -  -4.5  -3.53012   GTCCTGGTTTGGAAA          GAGCGTTGC CGCCGC ACCACGCTC           AGCGCGGCCGCCAGC  52 24
LTC53_RS17215 3974278 .. 3974289 -  -2.2  -4.68593   CGCAGGACGGAAAAA                TCGC GTCC ACGA                 TACACTCCCGCCCCG  70 113
LTC53_RS17210 3973146 .. 3973159 -  -2.3  -2.91264   GCCTCGAGGGAGATA               TGGCG GTCA CGACA                ACGCGGCACAAGCCA  40 18
LTC53_RS17205 3970980 .. 3971001 -  -5.1  -3.05463   ATGGCGTTCACCGAA           CGCGCAGC GGCCAAG GC-GCGCG           CTATGCCGGCCGGCC  47 90
LTC53_RS17200 3970000 .. 3970024 - -13.6  -3.05384   GTTGCCCTGATCGAA         GCGACG-GCGC GGAT GCGCCCGTCGC          TTGCCGATGCCGGAT  70 40
        dinB 3966779 .. 3966801 -   -17  -4.07568   TCCTGGGTGCGAAAA           GCGGCGCCCA TTG TAGGCGCCGC           GCTCCCTCGCGATCC 100 172
         gph 3965957 .. 3966009 - -19.5  -3.31144   CGCGCACCTGTAGAA GCGGCTTCAGCCGCGACCGGGCTCTA CCGG TAAAGC--G-TCGCGGCTGAAGCCGC TCCTACAGGGGGTGA 100 121
        bioD 3961499 .. 3961528 - -13.7  -3.05384   CCCCCGTGCAGCCAA       GACCCGGTAGA CCCCTCCC TCTACCGGGTC        TTTTTATGGCCGGGA  72 241
LTC53_RS17140 3957505 .. 3957546 -  -4.9  -3.07895   CGGACGCTCAAGATA CCGGTGGAC-ACCGTCAGCG CCG CGCCGCCGGTCGCCCGCGCG CCGCCGCTGGCCGGC  45 41
        maiA 3956386 .. 3956401 -    -6   -3.8917   GGTCAAGGACAAGAA              CGCGCG CCGG CGCCCG               GCCACCGAGGTGCTG  63 438
LTC53_RS17125 NONE
LTC53_RS17120 3953875 .. 3953900 - -18.3  -4.21471   AGGTGAAAACAAGAA         CGCCCCG-GCCG GAA CGGCGCGGGGCG         CTGCCTGGGAGCGGA 100 307
LTC53_RS17115 3953541 .. 3953590 - -24.3  -2.78384   CGGCTTCGGAGGAGA TGACGCGGGCGGTGGCAAGCC GACGAGGA GGCCGGCCACCGCCCGCGACA ATGGAACGCTTGTCG 100 54
LTC53_RS17110 NONE
LTC53_RS17105 NONE
LTC53_RS17100 NONE
LTC53_RS17095 NONE
LTC53_RS17090 NONE
LTC53_RS17085 3944144 .. 3944156 -  -4.1  -3.12351   GTTTCGGACATCTAA                CTCTC GGG GAAAG                TCCCTCGGGTCACCG  45 9
LTC53_RS17080 NONE
LTC53_RS17075 3941277 .. 3941290 -  -3.7  -3.14564   GGACGTCGCGAGCAA               CGGCG CTGG CGCTG                ATTGCGATCAATCGA  45 33
LTC53_RS17065 3939849 .. 3939870 -  -7.1  -4.08692   TAACTCTCGGGAAAA           GTCCCCCGG GTCA CCGGGGCGC            GCACTCCAAAGCATA  67 14
LTC53_RS17060 NONE
LTC53_RS17055 NONE
LTC53_RS17050 3938745 .. 3938766 -  -7.9  -3.28712   GGTGCGGCGCTAGAA           GC-GGCGCTC AAG GCGCGCCAGC           GACGAGCGTTCCCAT  56 11
        rfbB 3923036 .. 3923057 - -10.1  -3.14132   GGTGCTTCCTAGGAA           GTCCGCACA TCGA TGTGCGGGC            TCTTGCGAGGGACTC  62 44
        rfbA NONE
        rfbC NONE
        rfbD 3920613 .. 3920630 -  -9.8  -5.64421   AGCGCAAAGAAAAAA             GCCGGG TCGATG CCCGGC              TTTTTTCGTTTCTGC 100 61
LTC53_RS16955 NONE
LTC53_RS16950 3916112 .. 3916147 -  -2.6  -3.64703   TCGGCGGCAGCGAAA   CCTGG--CAGCTCACG TTCGAC CATGCGCTGATCCAGG    CGCCATTGCGTTGCC  50 160
LTC53_RS16935 3910876 .. 3910897 - -10.1  -2.75844   CCGCTGACCGCAAAG           CCCCTCTAC TCCG GGAGAGGGG            TTGGGATGAGGGTAC  57 145
LTC53_RS16910 3905795 .. 3905814 -  -7.8  -4.56597   CGCGGCCCCGAAAAA            CTGATCGG GAAC CCGATCCG             GCAACGGCTCGGGGA  79 109
        pssA NONE
LTC53_RS16885 NONE
        rimI 3900932 .. 3900974 - -12.7  -4.62336   AGCGCACCGCAAAAA CCGCCGCGCA-CGCGCACGCA GCA TGCCGGCGCGCTAC-CGGCGG CATGAAGTCGCGTGT 100 40
LTC53_RS16875 3900551 .. 3900561 -  -5.4  -3.05384   CCTTGGGTTAGGGAA                 TTGG ACT CCAA                 ATCTGACTGCTACTC  47 143
LTC53_RS16870 3898968 .. 3898984 -  -4.4  -3.28924   CACCTTCGTGCAGAA             CGCACCG GCGG CGGTG-G              TCGAGCAGGAGCGCG  47 465
        lptF NONE
        lptG 3889825 .. 3889850 -  -3.1  -3.61371   AAACTCGACCGGAAA         TCGCCGCATCA GGCC TGGCACGGCGT          GCGTTCGCAGACGCC  49 46
LTC53_RS16825 3889196 .. 3889219 -    -8  -4.66264   CAAAAGCCCTAAAAA          CCGCAGCACA CGGG CGCGCGGCGG           ATCCAAGCCTGTTCG  81 127
        xerD 3887452 .. 3887468 -  -6.5  -2.91681   GCGCAAGCGGACACA              GGCGC AGCGCGG GCGCC              TCAGCCGCGCGGATG  48 26
LTC53_RS16810 3886490 .. 3886504 -  -3.5  -3.28791   ATCGTTCGCCGACAA               CGGAT CAGCC ACCCG               GAACCCGCTTTCCCG  47 60
        purL 3882171 .. 3882228 - -10.4  -2.72344   CTTGATGTTCAAGCA GCGCCGGCG-CCGCAAGCGCGCGAAGGC CCGC GCCCACGCCGGCTTGCGTTCGC-GCCGC CACGTCCTCCGTGGC  57 62
LTC53_RS16795 3878219 .. 3878230 -  -2.2   -4.2828   CCGTACCGACTAAAA                GTAG AACC CCAC                 GTTCAGATTGAAACG  62 8
LTC53_RS16790 NONE
LTC53_RS16785 3870479 .. 3870504 - -19.1  -3.17194   ATTGCCGCAACCCAA         GGAAACCCGGC CGAA GCCGGGTTTCC          TTGGGTTGCTCCGGC  90 68
        gspE 3868392 .. 3868421 - -13.5  -3.57144   CGCGGGACGCGCAAA       GCAGGC-CGCGCGC ACT GCACGCGCGCCGGC       GCGCCGCGGCGCTGA  77 71
LTC53_RS16775 3867070 .. 3867100 - -13.3  -2.91264   GGCTGCACCCAGACA      GACCGGCCCGGCCA TCCA TGGCCGGGC-GTTC       GGCGCCACATGCGCC  69 62
        gspG 3866335 .. 3866361 -  -3.7  -3.30338   AGAACGCTGGCAGAA        GTGTGACTCACG ATGC CGCGA-TCACTC         GTACTTGATGTCGGC  47 20
LTC53_RS16765 NONE
LTC53_RS16760 NONE
LTC53_RS16755 NONE
LTC53_RS16750 NONE
LTC53_RS16745 NONE
        gspM NONE
LTC53_RS16735 NONE
        gspD NONE
LTC53_RS16725 3857599 .. 3857627 -  -5.2  -3.28791   ACCGTGCTGGGACAA       CGGCT-CGGGCTA CACC TGGCGCGCAGCCG        GCTGTCGATGTATCC  49 518
LTC53_RS16700 3851303 .. 3851321 - -13.2  -3.80014   ACAGGGAGCAGGAAA             CGATTCCG TAG CGGAATCG             CGACAGGAACGTAGC  83 131
LTC53_RS16695 3850294 .. 3850307 -  -9.5  -3.31144   CGGTCACCGTCAGAA               CCGCC ACCA GGCGG                CGACGAACGGGCCGC  61 6
LTC53_RS16690 NONE
LTC53_RS16685 NONE
LTC53_RS16680 3845835 .. 3845851 -  -6.5  -2.90763   CCTACAGTGCACACA              GCCAGCA TCC CGCTAGC              CCTTGTAGGAGCGAC  48 92
        pncB 3844364 .. 3844380 -  -4.3  -3.40073   ATGGTGACCAAGCAA              GCACGGC ATC GCCATGA              CAAGGACGGTCATCA  51 172
        wecB NONE
LTC53_RS16660 NONE
LTC53_RS16655 NONE
LTC53_RS16650 3834517 .. 3834556 -  -7.6  -3.19642   AGCACGATCGAGGAA  TCCTGCGCGGGCGGCGGC GGCG GCGGCGGTCGGAGCAGGA   GCCGGTGCCGGCACC  54 132
         def 3830951 .. 3831006 - -42.2   -3.5947   AACCTCTAGACACAA GCGGCTTCAGCCGCGACCGGGCGTTA CCGG TAACGCCCGGTCGTGGCTGAAGCCGC TCCTACAGGGAGAGG 100 56
LTC53_RS16625 3829720 .. 3829770 - -19.8  -3.06183   GCGAGCGCGACGCAA GCGCACGTATTGC-CACGGCCCGC GCACA GCGGGCCGTGTGCATTTCG-GCGC TCGGATTCTCTCGGC 100 70
LTC53_RS16610 3825267 .. 3825277 -  -2.4  -2.62616   GGACCCGGCACAGCA                 CCGG CTC CCGC                 GCCTGCCTGCATGGC  38 108
LTC53_RS16605 3824574 .. 3824606 -   -20  -4.64676   CGAGGGCGAACAAAA     CGC-AGACGGCCTCC CGGA GGAGGCCGTCTGGCG      GTGCCGCGACCGGGA 100 41
LTC53_RS16600 3823116 .. 3823143 - -10.5  -3.14564   GCAGGCGTCGACCAA        CGTCCGGGCCA CGTCCC TGGCCCGACCG         CTTCCAACTCCGAGA  62 42
LTC53_RS16595 3820613 .. 3820637 -  -5.5  -3.41125   GCCATAGACCGACAA          CCCCTGCCCCC CTC GCAGGCCGGAG          TCGGAAGGAGGGCCC  53 115
LTC53_RS16590 3819151 .. 3819164 -  -6.7  -2.92389   CAACTCAGCCATACA               CAGGA TACT TCCTG                CACTGCGCGGTCACC  50 1
        nrdR NONE
LTC53_RS16580 NONE
        ribD 3816479 .. 3816512 - -12.3  -3.48766   GCCACAAGGCAAACA     GGCGCGCGCACAGCC GCAA GGCTGCGCGAAAGCC      GTCTTCTTTCATCCG  74 345
LTC53_RS16570 3815766 .. 3815789 - -10.2  -2.58544   CGGGACTCGCAGAAG          GCGGAAGGCGC CGC GCGCCG-CCGC          GGACAGCGGCGACGG  57 67
        ribB 3814505 .. 3814526 -  -4.3  -3.07962   TGGGAGAGTTTAACA           GTGCCGCCGG GAC CCGG-GACTC           GTAAAAGCCGAAAGG  47 66
        ribH NONE
        nusB 3813442 .. 3813458 -  -5.7  -3.09492   TCGGGAATGGTAAGA              GCGAGGG CAA CCGCCGC              AGCATCGCCGGCCGC  49 104
        thiL 3812410 .. 3812424 -  -4.2  -3.53012   GGGTCCGGCGCGAAA               GCGTCT CGC AGACGT               CCCCTACCCAGGGGA  51 29
LTC53_RS16545 3810555 .. 3810585 - -11.2  -3.15861   CATCAGCTCGAGCAA       GATGGCGCGACA TCTTGCG TGTGGCGCCATC       GTGGGCACTCCCCGT  64 65
LTC53_RS16540 3809991 .. 3810009 - -10.2  -4.20042   ATGAACATCGCAAAA             CCGGCTCG CAG CGAGCCGT             CCTCTTCGGTGGATG  85 162
LTC53_RS16535 3808241 .. 3808267 - -10.1  -4.07535   AATCGCGACAAAGAA         CCCTTTGGCGC CGAAC GCGCCAGAGAG         GTGCTGCAGAAAACG  78 236
LTC53_RS16530 NONE
        kdpA NONE
        kdpB 3804263 .. 3804289 - -13.6   -3.1158   AAAGGAAGCGGAAGA         TCGGCGCCGGGC TCA GCCCAGCGCCAC         CAGGATCATGTCGAT  72 11
        kdpC NONE
LTC53_RS16510 NONE
LTC53_RS16505 3799994 .. 3800004 -  -2.4  -3.05463   ACCGCGCGCACGCAA                 CCGG CGA CCGC                 TTGTTGTAGAGCGGC  41 136
        rsmI 3795101 .. 3795115 -  -5.6  -3.68222   TGGGAAGCCGAACAA               GCAGGG TTC CGCTGC               CCGGCAGTGGCCTGA  57 120
LTC53_RS16455 NONE
        rsmH 3791762 .. 3791784 -  -5.5  -3.45023   GCAGGACGATTAGAA          GGAG-GCGGC TCAT GGCGCGCTCC           TGTGGAGCTGCGCCG  53 12
        ftsL NONE
LTC53_RS16440 NONE
LTC53_RS16435 NONE
        murF NONE
        mraY NONE
        ftsW NONE
        murG NONE
        murC NONE
LTC53_RS16405 3780416 .. 3780445 -  -4.1  -4.11216   TCGGGACTCGTAAAA       GCG-GCGCCCCTGG CGT CAATGCGCGCGCGC       TCGATCGGGCGTAGC  61 99
LTC53_RS16400 NONE
        ftsA NONE
        ftsZ 3776726 .. 3776752 -   -18  -4.56597   TCGCGGTCGCAAAAA         CCTGCCGGGTCG AGG CGACCCGGCAGC         AAAGGGACACGGCGC 100 106
        lpxC 3775491 .. 3775509 - -13.8  -3.14564   CGATGCCTGGAGCAA             CGACGGCC TCC GGCCGCCG             CAGTCTGCGCACGTA  73 190
LTC53_RS16375 3773999 .. 3774017 -   -16  -4.05788   GGGCCGCAAACGAAA             CAGGGCGC GAG GCGCCCTG             TCGTGGCAAAGCGTA  93 99
        secA 3770873 .. 3770893 -    -6  -5.26119   CTCCCAAAAACAAAA            CGCCCCGC GCAAG GCGGAGCT            GTAGATACAAGGATT  95 321
LTC53_RS16365 3770360 .. 3770388 - -10.9  -2.59154   GAACACCACAGCAAC        GGCGGCACCCACG CGG CATGGACGCCGGC        TCCTCGCTCACCCCG  59 33
LTC53_RS16360 3768911 .. 3768945 -  -9.2     -2.54   ACTACCGCACAAGAT     GCGCCCGACGCCGT GCCTGCG ACAGCGCCGACCGC     GACCGGCACCGCGCC  51 291
LTC53_RS16345 3766048 .. 3766061 -  -5.2  -4.52589   CCCTCCTACAGAAAA               GGCG TCGGTG CGCC                GCGATGCCTGCCATC  74 81
LTC53_RS16340 3765289 .. 3765317 -  -4.4  -2.87931   CGCATGCCGCAGATA        TGTGCGCAACCG GAACG CGGTGGCGCTTA        TTCGCGCCAATTCGC  44 23
LTC53_RS16335 3764242 .. 3764255 -  -5.2  -2.98823   TTGTGTGTAGATATA               CGCG ACCTTA CGCG                GGCCGAACACCATCA  47 253
LTC53_RS16330 NONE
LTC53_RS16325 3761916 .. 3761932 -  -5.1  -4.29738   GGACAGCTACGAAAA              GCAGG TCTACCG CCTGC              CGAAGAAGCTGGACG  69 337
         ppc NONE
LTC53_RS16310 NONE
LTC53_RS16305 3755237 .. 3755262 -  -4.8  -3.76393   ATAGGTGAACGCAAA         TGCGATACGTC ATCGA GACATA-CGCA         TGCGTATTGCAGGTA  58 489
LTC53_RS16295 3752123 .. 3752165 - -16.1  -3.14132   GCCGCCGCGCATGAA CGCCAACGCGCGCCGCGGC CCTAT GCCGCGACGCGCGAGGAAG GTCTGCGATGCGCAG  81 50
LTC53_RS16290 3750502 .. 3750520 - -17.4  -4.25104   GCGCTTGCACGAAAA             CGGGCCGC GTT GCGGCCCG             TTTTTTTGTTCGTGG 100 204
LTC53_RS16280 NONE
LTC53_RS16275 3746123 .. 3746154 -  -7.2  -3.14132   TGGCTGCTGCAGCAA      GGCGGCGACGGCGCC TAC AACGCCACCG-CACC      GACGCCGGTGACCAA  53 403
LTC53_RS16265 NONE
LTC53_RS16260 3743955 .. 3743966 -  -7.2  -3.06183   CTGACGCGCAGCTAA                GGCG ATCG CGCC                 TGCGCCGCCTGCGCG  51 10
         gnd 3742928 .. 3742938 -  -8.2  -3.05384   TGGCGCTGGACTGAA                 CCGC CGC GCGG                 CTTATCCGGCCGCGC  55 27
LTC53_RS16245 3741259 .. 3741276 - -11.3  -5.75342   GGCGCCCAAAAAAAA             CGCACTC CGAA GAGTGCG              TCGTAGGTGTGGCGG 100 89
LTC53_RS16240 3740718 .. 3740738 - -11.8  -4.67607   TCGGGAACAAAGAAA            CGGGCGAC TGTGC GCCGCCCG            TGACCAGTGTCGATG 100 49
LTC53_RS16235 NONE
LTC53_RS16230 NONE
LTC53_RS16225 3736582 .. 3736614 - -11.9  -3.71873   CCAGCCAGAGCGAAA      CCGACAACCGCGGCA ACC TGCCGCCGCTGCCGC      CGCGCCGCGTGCCGG  74 209
        folK 3735044 .. 3735064 -  -2.6  -3.72576   TCGGTGGTCATGAAA           GCTG-GC-AG TGC CTCGCCCAGC           GGACGCTCGAGGCAG  51 112
LTC53_RS16205 NONE
LTC53_RS16200 3732562 .. 3732577 - -10.4  -3.75738   CATCACCACGAAGAA              TCCGCC TCTT GGCGGA               AACGGGGGACCGCAG  70 70
LTC53_RS16185 NONE
LTC53_RS16180 NONE
LTC53_RS16175 NONE
LTC53_RS16170 NONE
LTC53_RS16165 NONE
LTC53_RS16160 3718990 .. 3719003 -  -3.7  -4.55287   CCGAGTGAGAGAAAA               GCGCG TCAG CTCGC                AGCGCCTTGGCCAAC  70 17
LTC53_RS16155 NONE
LTC53_RS16150 NONE
        nagA 3715353 .. 3715411 - -17.5  -3.05384   TTCGTCGCGACTGAA GTCGCTCCCACAA-GGGCTCCACCGGCGC ACG GCG-CGGCGAGGCCTATTGTGGGAGGGAC TTCAGTCCCGACTGC  82 317
LTC53_RS16130 3708072 .. 3708099 - -13.4  -2.57344   CAGGCCCTGTACAAG        CGCA-CCCGGCTG CAA CCGCCGGGCTGCG        TGGTGCCGACCTTCC  66 411
        yihA 3704049 .. 3704065 -  -7.9  -3.62775   ACCATCGCTGAAGAA              CAGCCGC GGC GCGCCTG              AGCCCCGCTCTCACC  63 172
LTC53_RS16085 3700338 .. 3700374 -  -5.1  -2.84504   ACCGCTGAAACAGGA   GCG-TGATGCTGCGCG TACCGC CGAACCGCATCAGCGC    AGATCCGCCCAAGTC  46 39
LTC53_RS16080 NONE
LTC53_RS16075 3698181 .. 3698217 -    -8  -3.28712   GCCGCTGCGCGACAA    GACCATCGCCGACATC GACGA AATGAAGGCGATGATC    TCCGCTGCGCTGGAC  55 519
LTC53_RS16060 NONE
LTC53_RS16055 3694600 .. 3694615 -    -4  -2.61831   GTCAGGTCAAAAATG              GATCACG GTG CG-GATC              GACTTGCCTTCGTGC  40 1
         gfa 3693903 .. 3693945 - -15.5  -3.05844   GGCCGCATCCGAAGA CGCCGC-CGCAACGCACCGC CACG GCGGCACGCGGCGAGCGGCA GGTTCAGTGCAGCAC  77 29
        fghA 3692781 .. 3692801 -  -5.3  -4.36914   GCGGCCGCCATAAAA            CGCTGCCGC AAC ACGGCACCA            GAGCGGTTCTCTCTG  72 240
LTC53_RS16035 3689580 .. 3689597 -  -4.8  -3.72324   TACGGTGAGGAACAA             CGC-GCC GAACA GGCAGCG             GTAGAACACCGCGGT  55 160
LTC53_RS15995 3680919 .. 3680948 - -15.7  -2.50816   GGCGCACCGAGGAAT       TGGTCGGCGGCTGC TGA GC-GCCGCCGGCCA       CTGAAACGCGCGGCC  73 139
LTC53_RS15980 3678181 .. 3678203 -    -9  -2.71011   AGTTGGCGGGAATCA           GCCCGGCAGG ATG CCGACCAGGC           CCTTCTGGCGCATCG  55 0
LTC53_RS15955 NONE
LTC53_RS15950 3670669 .. 3670700 -  -4.7  -2.97476   TATATTTAAAAATAT      TTTGATATTTTTA TTGCCC CAAAAATACCAAA       TAACGATGCTGACTA  45 45
LTC53_RS15945 NONE
LTC53_RS15940 NONE
LTC53_RS15935 3663416 .. 3663439 -   -16  -5.28778   AGCATCCATAAAAAA          GAGGCCCCGC GTCA GCAGGGCCTC           TCTAGATACAACTCA 100 64
        rsgA NONE
LTC53_RS15925 3660767 .. 3660793 -  -5.1  -3.53012   TTTTTTGCGTGGAAA        CGGC-GGCCATGC GCT GCA-GGCCAGGCG        CGCAGTATCGGCACG  54 78
LTC53_RS15920 3659978 .. 3659997 -   -10  -4.03234   TCCCTCCGACAGAAA            GCAGGCAGG CGC CCTGCC-GC            GCCATCAAGCCCGCA  78 89
LTC53_RS15905 3653530 .. 3653541 -  -7.2  -4.11216   TCGGGACCCGGAAAA                GCGC GGCG GCGC                 GAACTGAAGCGTTAC  67 37
LTC53_RS15880 NONE
LTC53_RS15875 NONE
LTC53_RS15870 3645225 .. 3645268 -  -6.6  -3.01712   CCGCGGCGCGGAACA GGGGATGGTCGTCGGCGACCA GAA TCGTAGGCG-CATCCATCCCC ACAGTCTGGCATGCG  49 200
LTC53_RS15865 NONE
LTC53_RS15860 3644164 .. 3644182 -    -3  -3.31144   GTCCCAGTGGGAGAA             GGAATAGC CCT GCTGTGCC             GCGTCGCTCACCACT  46 33
LTC53_RS15845 3637977 .. 3637993 -  -2.9  -3.53012   GCGGCCTGTTTGAAA              TCGTCGT TTG ACATCGA              GGCTTCTGTGGTCGA  49 169
LTC53_RS15840 3635628 .. 3635643 -    -6  -3.10409   GATCAACCGACGCAA              GCGCGC TTAC GCGAGC               CGCATACACAATGGC  51 81
LTC53_RS15835 3635121 .. 3635140 -   -10  -3.40867   TGACTGACGAACCAA            GCTACCGC GCTG GCGATAGC             CATCACTCCAGATAG  65 28
LTC53_RS15830 NONE
LTC53_RS15825 NONE
LTC53_RS15820 3633105 .. 3633119 -  -2.7  -3.10894   AGCAGCACTATTCAA               GCACC GTACT GGAGC               GCAGAAAACATTTCA  44 7
LTC53_RS15815 3632877 .. 3632906 -  -7.2  -3.91084   TTACTCTTAATTAAA       GGCGTCCGAA GAGTATCGGT TTCGGACACC        TTTCCAAATTAATCA  66 46
LTC53_RS15810 3632168 .. 3632179 -  -4.4  -3.52093   ACACTGCAAGGACAA                CAAC CGCA GTTG                 CCACTCGATTTGCGC  52 164
LTC53_RS15800 3630943 .. 3630956 -  -3.1  -3.21622   ATAGACATCCATCAA               TGCAT ACCC ACGCA                ACGCCTTACTGATCT  46 31
LTC53_RS15795 3628656 .. 3628686 -  -3.1  -3.80014   AGAGCGAGCACGAAA      GCCTGCCGC-TGCC GATG GGTAAGCGTCTGGC       CTGAAGGGTCTGCGG  56 176
LTC53_RS15785 NONE
LTC53_RS15780 NONE
LTC53_RS15775 3625539 .. 3625560 -  -3.6  -3.64703   CCTCGCGCACCCAAA           CGCCACGA GCCGCT TCGCGCCG            TACCCTCGCCCGCCC  54 63
        waaA 3622852 .. 3622871 - -10.6  -4.12188   GTACTACCGCGAAAA            GGCGGGCC TTCG GGTCCGCC             TTTTTGCATGGGAGC  81 222
LTC53_RS15745 3616607 .. 3616639 - -16.9  -3.08679   TCCCGGTACCGAACA      GGCGGCGCGATGCAG CCG CTGCCACGCACCGCC      GCTGCGCCTAGCCGA  84 33
LTC53_RS15690 3604123 .. 3604147 -  -2.1  -3.88232   TGGGTCACATAAGAA          CGACGTC CCTCTCCCCCT GACGCCG          GCTCGACACCGGCGG  54 71
        thiC 3601851 .. 3601869 -  -2.3  -3.61902   GCGCATCATAGACAA            GCGCACGC CACG GCG-GCGG             GATGATCCCGGGGCC  48 40
LTC53_RS15680 3601115 .. 3601130 - -11.8  -2.74371   AAGGTTGCAAGACTA              CGCGCC GCCT GGCGCG               TTTTTTTAACCGCAA  62 42
LTC53_RS15660 3597644 .. 3597654 -  -3.2  -3.70139   CAACGCCAAGAAATA                 CATC GAG GACG                 GCCACTTCGGCGGCA  55 237
LTC53_RS15650 3594763 .. 3594800 -  -3.4   -3.7282   GCACGCCATTAAGAA  CT-GGCAACGG-TGCACG ACAA CGTGCAGCCGCGGCTGAG   AACACTACATTCCAG  53 209
LTC53_RS15635 3591711 .. 3591743 -  -9.9  -3.28924   CATCCTTGCGCAGAA     CGCG-GCTCGCTGCC CGCTT GGC-GCGAACGCGCG     GCAGGCGGAGTCCGC  63 420
         mpl NONE
LTC53_RS15625 3589114 .. 3589167 - -16.7  -3.45134   CGAAGCAATGTAGAA GCGGCTTCAGCCGCGACAGGTTTCA TCGG TAAAGCCTGTCGCGGCGGGAGCTAC TCCTGCTGGTGCTGG  85 121
LTC53_RS15615 3586242 .. 3586262 -  -3.9  -3.35798   ACTCGGGACTGACAA            CAGCTTAGC CCC ACTGAGCCG            CAGACACCCCAAATC  49 83
LTC53_RS15610 3585354 .. 3585371 - -12.7  -3.93038   GAGCGCAACACCAAA             CGCAGCG TCAC CGCTGCG              ACCGGCCCACTGCGC  82 48
LTC53_RS15605 3583777 .. 3583826 - -13.6  -3.55563   AGTGGATGGCGGAAA CGGGC-AGGACCGCGACGCGCCGCG ACA CGCGGC-CG-CGCCGTCCTTGCACA GGCGCACAGGGTAGC  77 98
LTC53_RS15600 3583287 .. 3583320 - -22.4  -2.79831   TTCAGCCGAAAACAG     GCCGCCGCGTGCCG TGCATC CGGCGCGCGGCGGC      AGCGAATCACCACAC 100 32
LTC53_RS15595 3581403 .. 3581414 -  -3.6  -3.28924   CAGCGTGGTCCACAA                CCGC GAGC GCAG                 GATGTCCTGGGTACT  47 444
LTC53_RS15585 NONE
LTC53_RS15580 3579527 .. 3579541 -  -5.6  -3.37344   TCGGCACTGAAGCAA               GCCGAA GCC TGCGGC               GGGATCATGTTCGGA  53 430
LTC53_RS15545 3573346 .. 3573359 -  -6.7  -3.53091   ATGTCCCGGGGTAAA               TCGCT GTCA AGCGA                TTTGATGCAAAAAGG  58 249
LTC53_RS15530 3571691 .. 3571705 -  -7.8  -4.86731   CCCTCCTAAAGAAAA               CGCAGC ATT GCTGCA               GACATGGGAAAACCC  86 1
LTC53_RS15490 NONE
LTC53_RS15485 3564167 .. 3564197 -  -2.4  -4.30844   ATCGCAGGAGCAAAA       GCAAGAGCGATCAT CCG AGGTTCTCGCTTGC       GGCCGCCCATCTCAC  65 67
LTC53_RS15475 3562130 .. 3562140 -  -8.2  -3.43492   GCAGATCGACGAGAA                 GCCG ATG CGGC                 GCGCCTCGGAAAACC  61 135
LTC53_RS15460 NONE
LTC53_RS15455 NONE
LTC53_RS15450 NONE
LTC53_RS15445 3555735 .. 3555745 -    -4  -3.31144   GTGCTATCCCCATAA                 TCAA TCA TTGA                 TCGTCCAGCGCCACG  47 19
LTC53_RS15440 3553735 .. 3553762 - -14.2   -3.6053   TTCGGCACAAACGAA        GATGGGAGAAGC GCAT GCTTCTCCCGTC         CTGATGCCAGCACCG  78 80
LTC53_RS15435 NONE
LTC53_RS15430 NONE
LTC53_RS15425 NONE
LTC53_RS15420 NONE
LTC53_RS15415 3548192 .. 3548222 -  -2.4  -2.62616   CCAGCGCGGACAGCA       GCAGTCCTGCCCAC AGG GTCAGCATGACCGA       GCGCATCCGCGTGGC  38 79
LTC53_RS15410 3546422 .. 3546435 -  -9.5   -4.1822   CCCGAGCTTAACAAA               CCCGC ACTG GCGGG                CTGCAAGCCGGCGTC  80 91
LTC53_RS15405 3545050 .. 3545062 -  -3.3  -3.81137   TTGCAAATAGCCAAA                CGGTC ACG GACAG                CGCTTCATGAGTTCC  56 30
         tkt 3542866 .. 3542883 - -14.1  -5.20333   CACGCACAAGAAAAA             GGCCGGC TTGG GCCGGCC              TTTTCCGTTCCCGCG 100 53
         gap 3521559 .. 3521572 -  -9.5  -5.64274   GCAGCCACAAAAAAA               GCGCC TGTA GGCGC                TTTTTTTGTCGGCGG 100 51
LTC53_RS15285 3519782 .. 3519807 - -18.3  -5.47821   ACGCAGGCAAAAAAA         GCCCGGGC-GCG CGA CGCGGCCCGGGC         CCTGCTGCTGCGCCC 100 43
LTC53_RS15275 NONE
LTC53_RS15270 3514309 .. 3514343 - -16.4  -2.51133   GACGTACGCAGCAAG     GCCGCCACGCCGCG ACAGGCG CGTGGCGTGGCAGC     GCCGCTGCCGAATCA  77 38
LTC53_RS15265 NONE
LTC53_RS15260 3512136 .. 3512173 -  -6.7  -2.62933   CAATGCGGGACAGTA   TGCGGACTCGACGCCGC ACTG GCGGCGCCCCGCACGCC    CCCGGCAGCGCCGCG  47 121
         pyk 3510495 .. 3510520 - -21.9     -6.13   ACAGGCAAAAAAAAA         CCGCGCGCTGC ACAG GCAGCGCGCGG          TCGTGCAGCGGCGCG 100 56
LTC53_RS15250 3509276 .. 3509292 - -15.1   -5.4505   GGGTGGAACAAAAAA              CGCCGGC GAT GCCGGCG              TTTTCGTGCGCTTCT 100 50
LTC53_RS15240 3507749 .. 3507762 -  -9.5  -3.14211   ATCCCGTTCGAGGAA               GCGCG CTTG CGCGC                GAGCGCTTCGGCAGT  60 191
LTC53_RS15230 3505967 .. 3505977 -  -6.8  -3.12327   CGGCTACATCGAACA                 GGTC CTT GACC                 ACTCTCTCGATGAGG  52 225
LTC53_RS15220 3505255 .. 3505279 - -10.7  -3.06796   CCCCATGGTACGGAA         GCGC-CGCCG GTGGCG CGGCGTGCGC          TCGTGTTGTGCGTCG  62 63
LTC53_RS15210 NONE
LTC53_RS15205 3501850 .. 3501864 -   -10   -4.1891   CGCCCCGAATACAAA               CCGGAA CCA TTCCGG               GATACGGAGCGGCGG  85 471
LTC53_RS15185 3498044 .. 3498061 -  -8.3  -3.57144   CCGCGCAGCCTCAAA             CGCGCCG CTTG CGCCGCG              CCATCGGCGATCGCC  62 114
LTC53_RS15180 3497028 .. 3497046 - -10.2  -2.71681   CAACGCGGTCAAGTA             CACCGAGC ACG GCGCGGTG             CTGATCGGCTGCCGG  56 333
LTC53_RS15155 3493442 .. 3493466 - -13.5  -3.20573   CCATCGACACGAAGA          CGTCCCGCGGC GAC ACCGCGGCACG          CAACAAGAGGCGTCG  72 45
LTC53_RS15150 NONE
LTC53_RS15145 3489394 .. 3489419 -  -4.6  -3.41745   GCGCTACAAGATCAA         CCCGATCGCC GACTGG AGCGACCGCG          ACCTGTGGCAGTACA  52 489
        cysD NONE
        cysN 3481938 .. 3481978 - -10.4  -3.14132   CCGTGGCGGGACGAA CGCCGAC-C-GGCGCGACTG GCG CAGCGGCGCCAGCGCCAGCG CCGCGTGGGCCGCGA  62 56
LTC53_RS15115 NONE
LTC53_RS15110 3478778 .. 3478803 -  -7.5  -2.79796   GGGCACCCGAGCATA         CCGCGGTGGCGC GCA GCGCAACCA-GG         CGACGCGCGCGCGCA  51 512
LTC53_RS15100 3477866 .. 3477884 -  -3.8  -4.44046   CCCATGCGAAACAAA             CCGTAG ACAAATG CCACGG             CCGCGCTCGCCAAAG  70 330
LTC53_RS15095 3476672 .. 3476714 - -10.8  -2.63079   CTCCGACATAACCGA CCGGA--CGGAAGGATCGTGC CTGC GC-CGATCCTTCCGTATCCAG CATGCACAGCGTGTA  59 88
LTC53_RS15075 3473217 .. 3473271 - -10.8  -3.28791   ATCGGCCCCTCACAA CTGCCA-A-GGCCGGCGCCGGATGCA TCGCC TGCACCGGACGCCGACCATATCGCAG GCCGCGTCGTCGCCC  66 433
LTC53_RS15065 NONE
LTC53_RS15060 3471538 .. 3471567 -  -9.9  -3.53012   TCGCGCGGCCGCAAA       CGGCGTGTTCGGGC GCA GCCCTCAC-CGCCG       CGCGCGGCTCAGTGG  67 34
LTC53_RS15030 3466303 .. 3466317 -  -5.7  -3.10464   CGATCAACTGGAAGA               CCATC TTCAT GATGG               CCGGGCTGATCCCGC  48 461
LTC53_RS15000 3460400 .. 3460412 -  -9.1  -3.33525   TTTAGGCAGACAACA                GACGC GAA GCGTC                GCCGGATCGAAGAGT  61 254
LTC53_RS14990 3459683 .. 3459697 -  -2.1  -3.97947   GGGATTGACGAGAAA              CT-GCC ATTG GGCGAG               CCGTGCAAGAGCGAC  58 343
LTC53_RS14930 3446076 .. 3446119 - -17.6  -3.53012   TCGTCGCGGTTGAAA CCGCTCCTACAAAA-GCGCGC AGT GCCCGGGTTTTGTAGGAGCGG CTTCAGCCGCGACAC  90 78
        rimK 3442068 .. 3442094 - -23.8  -4.96848   CTGCGCATACAAAAA         GGCCCAAGCGGC GAC GCCGCTTGGGCC         GAAAATATATCCCGA 100 141
LTC53_RS14915 NONE
LTC53_RS14910 NONE
LTC53_RS14905 3439444 .. 3439477 -  -3.8  -3.48276   GCCGCTCCTACAGAA    GCCGGCGCTCGTCCGA GCCC TCGGTC-AT-GCCGGC     CTGAACCACAGTGTC  49 16
LTC53_RS14885 3435750 .. 3435767 - -10.5  -4.38712   GTTATTTGCAGAAAA             GCCCCGC AAAA GCGGGAC              TCTGCTTGAAGCGTA  88 44
        pilB 3433099 .. 3433134 -  -6.9  -3.08798   ACGGCGGATTGAACA    TGGTGCATCCATT-CC GGGAA GGCAACGGACGCACCC    AGCGCCTATTTTTCG  52 223
        sucC NONE
        sucD 3426851 .. 3426870 - -16.4   -4.8622   TGGCGCAACGAAAAA            GGCCCCGC TTGC GCGGGGCC             CGATTCGACGCTCGC 100 116
LTC53_RS14840 NONE
LTC53_RS14835 3424875 .. 3424890 -  -6.8  -3.67792   TCAGACCTACGCAAA              TGCGCC GCGC GGCACA               GATCCGATCTGTACG  61 258
LTC53_RS14820 3419802 .. 3419828 -  -5.1  -3.53563   AGAGCTTCGGCGAAA        TG-GCCGC-GGCC GTC GGCCTGCGGGTCA        GCCACGGCTGGAACG  54 233
LTC53_RS14805 3416161 .. 3416190 -  -4.1  -3.14132   CGGCGCCTGCAGCAA       GTCGA-GCGGCGCC ATC GGCGGCGCGTTGCC       AGCCGCGATGGACGG  45 125
LTC53_RS14800 3414794 .. 3414808 -  -5.6  -3.09516   GTCGCGACGAGCGAA               GCCAGG AAC CTTGGC               GGTTTTGCTCGCCTG  49 217
        rluD NONE
        pgeF 3408418 .. 3408469 - -26.1  -2.52543   AGCCGCGGCAACGGA CGCACGCGCTGCCGT-GCGGGCTGC AACC ACAGCC-GCGACGGCAGCGCATGCG CGCCGAAGCGGCGCT 100 242
LTC53_RS14750 3404082 .. 3404112 - -12.4  -3.25823   CGCCGGGCACATCAA       CGGCGGCCACGCCG AGC CGGACTGGACGCCG       CTGCGCTACGTCAAC  70 467
LTC53_RS14720 3396107 .. 3396117 -  -2.4  -3.78775   TGCCGGATCACGAAA                 GGCG CCG CCCC                 CGCTGTTCCGGCCGG  54 78
LTC53_RS14715 3395618 .. 3395669 -  -8.1  -2.52464   TGGCGCGCGAACGGA TGCAGCATCCCGGC-CTGCA-CCGCG CGA CGCGGCTACAGCGCCAG-ATGCAGGA ACCGGTTGAACGCGC  49 132
LTC53_RS14710 NONE
LTC53_RS14705 3392596 .. 3392621 -  -3.1  -3.01712   GTTCTCCGTTGAACA         GTGGCAGGTGT GACC ACGGCTGCCGC          CACCGGTTCCAACGC  42 95
LTC53_RS14700 3391263 .. 3391311 - -12.4  -2.71637   TACGAAGACCAGAAG CCGGAAG-CGCTGCGCCGCGCCGA GAA CCTGCGC-ACGCAGCGGCTGCCGA AGTTCCTGGGCTACT  63 459
        clpB NONE
LTC53_RS14685 3387684 .. 3387696 -  -4.8  -3.86194   AATGTTGCTCATAAA                CCGA TGATC TCGG                TTTCGAGCTGGCGGG  58 6
LTC53_RS14680 3387318 .. 3387332 -  -4.2  -3.63782   CAACAGGAGCCGAAA               CGATAG CGG CGATCG               AGGGGGCGCCTGCTA  54 57
LTC53_RS14675 3385889 .. 3385931 - -13.2  -2.62263   AGCCGTTGCAGAGCA CGCCGCTCGGGACGGCGGCA TCG CGCCGCGGCCTCGACCGGTG CCGCATGTGCGCTCG  67 97
LTC53_RS14625 3371113 .. 3371125 -  -4.8  -4.19817   CGGACGTATCGAAAA                CACC GCCTG GGTG                ACGCCGATGGGCAAG  66 165
LTC53_RS14610 3367267 .. 3367296 -  -5.6  -3.53811   TCCATTGCCGGCAAA       CCTGGACGGCCA CGACGC TGGCCGGACAAG        CTGCATGCCGACAAG  54 355
LTC53_RS14600 3364718 .. 3364731 -  -3.8  -4.07568   GTTCCTGCTTGAAAA               CTGG ATTTTA CCAG                CGGATGGCGTATTGG  61 269
         pip 3363701 .. 3363733 -  -7.6  -3.68351   CCCGCAGGATGTAAA     GCTGCAGCGCACTGC GTGG GC-GTGCGCCGCGGA      CGGCGGCGCACGCCA  63 49
LTC53_RS14565 3358157 .. 3358170 -  -5.9  -3.28712   GCGGTCCTGGCATAA               CGCCG GCTG CAGCG                CGACGCGAACCCGCC  53 56
LTC53_RS14560 3355558 .. 3355577 -  -3.5  -3.86684   AGAAGCTATATTAAA            CGGTGCA TCAGCG CACACCG             GGATCGTGACGCCCT  57 118
LTC53_RS14555 3353368 .. 3353408 -  -4.6  -4.37658   AATGTTGCGAGAAAA CGCTCTGGCGCCGTTAGCAA CTG TCGC-ATCGGCGCGCG-GCG TCGTTGCCGGCCGCC  69 82
LTC53_RS14535 NONE
LTC53_RS14530 NONE
        sufT NONE
LTC53_RS14515 3347116 .. 3347150 - -10.7  -2.54098   TTGCGCAAGGAAGAT    CGACGCTGGGCGCAGC GGTT GCCACGTCCAGC-TCG     GCGCCCGCCAGTGGC  59 63
LTC53_RS14510 3344827 .. 3344846 - -16.4  -5.30616   CCAGGCAAAGAAAAA            CCCCGCGC CGAG GCGCGGGG             CTGTGTTCGCTGTGA 100 132
LTC53_RS14480 NONE
LTC53_RS14475 3339436 .. 3339456 -  -8.9  -2.52516   CCGGCGACCAGGAAG            CGGGCGGAC GCC ATCAGCCCG            GGGCCTTCGTCTGGC  51 18
LTC53_RS14470 3339146 .. 3339164 -    -3  -3.05384   CTCGTCGGGACTGAA             GTCCCTCC CAC AGCGAGAC             GCAAAGATTTCCGAG  42 44
LTC53_RS14435 3332805 .. 3332833 -  -4.4  -3.64703   GTTCTTTCAGGGAAA        GGCCGGCGAG TTCCATTGC CGTGCCGGCC        GGATTGGACGTATCT  55 485
LTC53_RS14430 NONE
LTC53_RS14425 3331172 .. 3331190 -  -2.4  -4.17657   GACGACACCCGAAAA             TTCCGC TCTTCTG GCGAAA             CCGGCACGCGGTTGA  62 427
LTC53_RS14420 3330257 .. 3330269 -  -6.9  -4.16814   GCATCACACAAACAA                CGCCA TCT CGGCG                CCGCTTCACGAATGC  72 132
LTC53_RS14415 3328570 .. 3328588 -  -5.2  -3.62096   TGTGATCACGGCAAA             TGTCCACT GCA AGCGGGCA             TTGCCTGCTGCTTGA  54 117
LTC53_RS14405 3326433 .. 3326470 -  -6.3  -2.76468   GATCACGGAAGATCA   TCCTATTTCGGCG-CGTC CGC GACAACGCCGATACACGA   AGCGTTCGTACCTGA  47 94
LTC53_RS14400 3324325 .. 3324338 -  -9.5  -3.66654   CAGTGGAACGGGAAA               CCGGC AGAC GCCGG                CCAGTTCTACAATGT  68 257
LTC53_RS14390 3322720 .. 3322733 -  -3.8  -3.41982   AAAGCGACGAATCAA               CCTG ACGTAA CAGG                TCGCTGAAGCTGCCC  49 379
LTC53_RS14380 3319742 .. 3319755 -  -9.5  -3.93038   CAGTGGAACAGGAAA               CCGGC AGAC GCCGG                CCAGTTCTACAACGT  73 201
LTC53_RS14370 3316157 .. 3316183 -  -2.3  -4.11216   TCCTGAGCCTGAAAA        TGGAGCG-CGTCT GGC AG-CGTCGCTACA        CCAACCCACTACATC  58 210
        vgrG NONE
LTC53_RS14355 NONE
LTC53_RS20055 NONE
LTC53_RS14350 NONE
LTC53_RS14345 3306057 .. 3306100 -  -3.1  -2.87211   ATCGCCTTCCACATA GCGAT-AGGCCACCAG-CGGA TGGG TCAGGCCGGTGGCCGGATCGT GCAGTTGCAGGCGGT  41 91
LTC53_RS14330 3302880 .. 3302898 -  -3.7   -3.2059   ACGGAGGAGAAGATA             GCAGGAG TTCAG CCCCGGC             TCACCCTTGGATCAA  45 26
LTC53_RS14325 3302518 .. 3302542 -  -4.2  -2.73483   ACGGGAGCCGAATTA          CCTTGCATCG TCATC CGATGCCAGT          CGTTCCCTGAGAGGA  41 11
LTC53_RS14320 NONE
        tssM NONE
        tagF NONE
LTC53_RS14305 3295300 .. 3295314 -  -2.7  -4.57073   TACCTGGCCGAAAAA               GCCGC GCGCT GGGGC               GAGATGCCGCTGCAC  71 180
LTC53_RS14295 3293386 .. 3293402 -  -2.2  -3.38609   AATTTAACAGACGAA              TCCTGC GGCGG GCATGA              CGGTCCGCCGTCTGC  46 50
LTC53_RS14290 NONE
LTC53_RS14285 3289550 .. 3289564 -    -7  -3.36505   ACAGCCCAGCGACAA               GGCCGC CAA GCCGCC               CAACGCCAAGGCGCG  56 82
LTC53_RS14280 NONE
LTC53_RS14275 NONE
LTC53_RS14270 3287708 .. 3287719 -  -2.2  -3.21872   CCCAAATACATCGAA                GACA ATTT CGTC                 AATTTTCGGCTTAGA  44 45
LTC53_RS14265 NONE
LTC53_RS14260 NONE
LTC53_RS14255 3284874 .. 3284889 -  -8.2  -2.73875   TGTCGTCGAACACCA              GCCGGC TGTG GCCAGC               GCCGCCCCATTCCTT  52 401
LTC53_RS14245 NONE
LTC53_RS14240 NONE
LTC53_RS14235 NONE
LTC53_RS14230 3281476 .. 3281499 -  -8.8  -2.62735   AGAGTTTCCACAGCA          TGCCGTCCTC TTTC GAGAACGGCC           GCCCACGAGCCCCTT  52 132
LTC53_RS14225 3280884 .. 3280903 -   -15  -3.57263   AGGGGCATCGGGAAA            GGCGGGGA CTAA TCCCCGCC             CAGCACTCGGACGTG  81 14
LTC53_RS14210 3276679 .. 3276689 -  -2.4  -2.57132   CCTCGTTGGCACAAG                 CGCG GGA CGTG                 ATCGCAGACTGGCGA  38 193
LTC53_RS14140 NONE
        tssB NONE
        tssC 3257226 .. 3257243 -  -2.6  -3.69618   GTCAACTGCAAAACA             GTGGGA TCTCCG TCCCTC              GACGCTACGACAACA  51 48
LTC53_RS14125 3256590 .. 3256617 - -17.1  -3.53012   CGCGCGGCGCGCAAA        TGCGATGGCGC GCGAAG GCGCCATCGCA         AAACAAACATCAAAC  89 35
        tssE NONE
        tssF NONE
        tssG 3253020 .. 3253036 -  -2.9  -4.13945   ATGCTCATGCGAAAA              CAGGACG CTC CATGCTG              GCGGTTTCATGATGT  59 87
        tssH 3250236 .. 3250254 -  -4.4  -3.35542   TGTATCCGTAAAAAT             CCATGGTG TTC CTCCTTGG             TGATGGACTGCGGGG  51 42
LTC53_RS14100 3249842 .. 3249859 - -14.1  -3.53012   CGCCTGGCGGCCAAA             GGCCGCG CGAG CGCGGCC              TGGAGGGTGGCGCGT  78 52
LTC53_RS14095 NONE
LTC53_RS14090 NONE
LTC53_RS14085 NONE
LTC53_RS14080 NONE
LTC53_RS14075 NONE
LTC53_RS14070 3239602 .. 3239629 -  -5.5  -3.49475   GCCATCGGCATAGAA        CGGCTGCGTGGA GAATG CCCACGCGGC-G        CAGGTCACGCGGCCC  54 152
LTC53_RS14065 3238633 .. 3238643 -  -3.2   -3.3539   ATAGCGAGAAATATA                 GCAA ACG TCGC                 TGGCATCACCGCGGC  48 460
LTC53_RS14055 3238171 .. 3238185 -  -9.2  -2.69964   CGCTCAAGGACATGA               CCGCCC GGT AGGCGG               GGAAACCTCATGGCC  55 49
LTC53_RS13965 3208950 .. 3208993 - -16.8  -3.53012   TCTGTCGCGGCTAAA GCAGCTCCTACAGAAGC-CGC ACC GCTCGCTCCTGTAGGAGCGGC TTCAGCCGCGACAGG  89 64
        nudE NONE
        cysQ 3202037 .. 3202064 - -11.3  -3.64703   TGCGGCGCATGCAAA        CGGC-CTGCGGC ACATG GCCGCAACGCCG        TCATCGCGCCTGGCG  73 118
        mazG 3201091 .. 3201110 -  -4.2  -3.75292   AGTCAGCACGAACAA            CAGCAGCG TCTT CACTCCTG             CGCCGCGTCGCGTTC  54 17
LTC53_RS13930 3200754 .. 3200765 -  -7.2  -2.84276   ATCTGCAAGGAATGA                GCGC CTCT GCGC                 AGCCCAATCGCGCCG  50 42
LTC53_RS13925 3200482 .. 3200509 -  -9.8  -2.84192   TACACCACGAGTATA        GCGAGCGCCGGCA GGC CGCCCGCGCT-GC        CAGCAGATGCGCCAG  59 64
LTC53_RS13920 NONE
LTC53_RS13915 3198959 .. 3198973 -  -5.6  -5.24129   CCCTCCTACAAAAAA               GCGCAG AAG CTGCGG               ACTTGCGAAAATCCC  89 87
        gcvT 3197428 .. 3197454 - -11.5  -2.52543   ATGCTCCGCAACGCA         GCGGCCGCGCA CCGGT TGCGCGAACGC         CGCGGCAGCCGCAGC  61 41
        gcvH 3196913 .. 3196933 - -15.4  -4.54727   CCGCGCAAACGAAAA            CCGGCCGC ACAAG GCGGCCGG            TTCGGCTGTCGCGAT 100 54
LTC53_RS13895 3196540 .. 3196574 - -12.7  -3.36505   ACACCCGACCGAGAA     CGCACGCGACGCCGC TGGCC GCGGCGCAGCGAACG     CGGCTGCGATCGGCA  73 82
LTC53_RS13890 3195785 .. 3195811 - -15.2  -4.12532   GGTCGGATACAGAAA         CACCCGTAGCGA AGC TCGATACGGGTG         TCGTGCCAGGGGAGA  89 219
LTC53_RS13885 3195148 .. 3195179 - -16.6    -5.252   CACGCCCATAAAAAA      GCTCCCTCCCCGCT GGGC ACCGGGGAGAGAGC       TTAGGTACGGCTATC 100 54
LTC53_RS13875 3191779 .. 3191807 -  -9.6  -3.36749   CAGCGGCAACACCAA       CG-GCCCGACGAT GATG ATCGCCGAGCGCG        CCGCCGACCTGATCC  63 101
LTC53_RS13865 3188721 .. 3188764 - -10.2  -2.86728   AGGATGCACAGCATA GC-CGTTGCCGCAGCGGCCG GCACCG CGACCGC-GCGGCTGCGCGC AGACTCAACGCGTGG  59 30
LTC53_RS13860 3188138 .. 3188164 -  -8.7  -3.14931   CGCATTTCCGATCAA        CGCTCGC-GCGCC CGT GGCACAGCG-GCG        CTTGCGCGCAATGTT  56 192
LTC53_RS13855 NONE
LTC53_RS13850 3186249 .. 3186275 -    -2  -3.64703   GTGTCCGGAGGGAAA         GCGTACGCGGTG GAT CGGCCCGTCCGC         GCACAACATCAGCAT  51 115
LTC53_RS13845 3185129 .. 3185170 -  -3.8  -3.02511   GCGACTGGCGGAAGA TCGCCGTGTCCGCTGGTA TTCGTCCT CACCAGCGCAC-CGG-GA ACTCCTCGAATCCAC  44 9
LTC53_RS13840 NONE
LTC53_RS13835 NONE
LTC53_RS13830 NONE
LTC53_RS13825 3181175 .. 3181232 -  -8.1  -3.91084   GTACCTGCAAGGAAA CGGCCACGGCGGAAGACGAACCGCCGC GATG GTGCCAGCGCCCCATCGGCCATGGCCG TGGGCGCCGGAATGT  68 89
LTC53_RS13820 3179913 .. 3179956 -  -2.3   -4.0162   GTGGGAGACGAGAAA CTGGATCTGGCGCAT-GCCGC GCAC GCGGCGATACGCCCG-CCGTG GTTCGCCGCGCGCCT  56 215
LTC53_RS13815 NONE
LTC53_RS13810 NONE
         fni 3175954 .. 3175978 -  -6.4  -2.65264   TCACCATGGACACGA          TCAGCGTGGA CGATT TCGACGCCGA          CGCACTGCGCTCGGC  45 339
LTC53_RS13790 3171686 .. 3171713 - -15.6  -3.05596   CACCCCCTGATCGAA        GCACAAGGCGCC GCAC GGCGCCTTGTGT         CGCTTCTGAGCGAAC  77 212
        mtgA 3163007 .. 3163021 - -12.8  -4.82901   CCTGCGCTACAAAAA               CGCCGC ATC GCGGCG               AACGTCGCACGGCGC 100 71
LTC53_RS13755 NONE
LTC53_RS13750 3161282 .. 3161294 -  -3.3  -4.67038   CTCGGAAAATCAAAA                GCTCA TAT TGCGC                TCTTGCTTTTCCGAG  71 53
LTC53_RS13725 NONE
LTC53_RS13720 NONE
LTC53_RS13715 3151572 .. 3151604 -  -5.5  -3.66803   TTGGAAGACTGGAAA     GCCGCCGGCG-TGC CGTGGC GCAGCGTCGACGAC      TGGTACGCGAAGGAA  57 510
LTC53_RS13695 3145667 .. 3145692 - -13.3  -3.61398   TGCGCTCGGCAACAA         CCAGTACGCCG CCGA CGGCACACTGG          AACTGCGCGGCGTGT  78 310
LTC53_RS13675 3140213 .. 3140237 -  -5.5  -4.27316   CTCGGGAATCGAAAA          GCGGCGCAGGC GTT GCCTGCGAATC          CGCTGCAGCCCTTAC  69 37
LTC53_RS13670 3136263 .. 3136286 -  -2.2  -2.70932   GGCGGCGTTCAACGA          CCACCTCGGC GACA GCCACGGCGC           CACTGCCGCGCTGCA  39 294
LTC53_RS13650 NONE
LTC53_RS13645 3128248 .. 3128288 -  -9.6  -2.62983   TGCACGCCGACAGCA TGCCGGCGGCGATGAGCGC GACC GCGCGCATCAG-GCCGGCT  CCGGCAGCGACGGCG  54 15
LTC53_RS13640 3126623 .. 3126680 - -12.3  -2.78816   CCACGGCGCAGGACA CCGAACGGCTGCGCGCGCTGCTGGCCG ACTA CGACCTGCCCACCGCGCTGCCGGCCGG CCTGGCGCCGCAGGC  63 181
        pdxH NONE
LTC53_RS13620 NONE
LTC53_RS13615 NONE
        soxR 3120849 .. 3120905 - -12.2  -3.63991   CAGGACGGCGAAGAA CTGCCGGCCAGCGGCC-AGGTCAGCGCC GTC GGGGCAGACCTCAGCGGCCG-CCGGCAC CCCATCGCAATGCGC  74 311
LTC53_RS13580 3116389 .. 3116400 -  -5.8  -2.50982   ATGAAAAATCAAACC                GCGA TGGA TCGC                 TTTTCCGAGTTCCGA  44 64
LTC53_RS13575 3114964 .. 3114984 -  -6.7  -3.28791   ACCGCGCCCGCAGAA            CGGCGCCTG CAG CCAACGCCG            CTCGCCTGCAACCAG  54 201
LTC53_RS13560 NONE
        ruvX NONE
LTC53_RS13550 NONE
LTC53_RS13545 3108045 .. 3108080 -  -3.9  -2.62515   AACGCTTGCACACGA   GCGCGTGCGGGGCGGCA CTAT CGCCGCGCTG-ACG-GC    ACGGCGCAAGCGGCG  40 77
LTC53_RS13535 3104576 .. 3104605 - -25.1  -3.05844   CGGCGCATGGCAACA       TCCGCCGCGGCGT GCAA ACGCCGCGGCGGA        CACGCGGACGTGCCG 100 42
LTC53_RS13525 3101655 .. 3101680 -  -3.9  -3.53012   TGGCGCTTCCTGAAA         GTCGGCGCGC TGGTGAT GC-CGCCGGC         GCTGCTGTGCGCACT  49 225
LTC53_RS13435 3086207 .. 3086218 -  -7.2   -3.2285   AGAAACGGAACGGAA                CGCG GGGA CGCG                 GCGCAGCCGGCCTGG  54 41
        murA NONE
LTC53_RS13425 3084484 .. 3084503 - -16.4  -4.77438   ATCCATCACGAAAAA            GGCGGGCC GCAC GGCCCGCC             TTTTTCTTTCAACTG 100 90
LTC53_RS13415 3083176 .. 3083193 -  -9.8  -5.08824   GCGTCACGCAAAAAA             GCGGGC CGCAGT GCCCGC              CTTGCATCAACAGCA 100 290
LTC53_RS13380 NONE
LTC53_RS13375 NONE
         hda 3075552 .. 3075574 -  -2.7  -4.09685   CGGGACTCGGCAAAA          GC-TGAGTTC CGGC GATCTCACGC           TCAACGCGCGAGGCG  59 101
LTC53_RS13345 3071055 .. 3071094 -   -13  -5.24531   ATCGCCCATAAAAAA CGTCGCCC-G-GCTGCAC GTCACT GTGCAACACCGGGCGACG  ATGTACGTCCATGTC 100 164
LTC53_RS13340 NONE
LTC53_RS13335 3069139 .. 3069157 -  -9.5  -2.57683   AGATGCCCCCACAAG             CGCGCCG ACAGA CGGCGCA             ACCGAAACGATGGCC  54 162
LTC53_RS13255 3053245 .. 3053264 -  -6.4  -2.80816   GCTGTACTCATGAGA            GGCTCC TGCAAGGT GGAGCC             TCAGCTTGGGAACGC  48 93
LTC53_RS13250 3052646 .. 3052665 - -16.4  -5.76949   CAGTCCTAAAAAAAA            CGGCGGCC AACA GGCCGCCG             TTTCTCGTTGCGCAC 100 55
LTC53_RS13220 3048478 .. 3048510 -  -2.5  -4.86731   GTCGGTGAAACAAAA      CTGAATTGGGACCGC TCG GCGGCGCCTGTTTAG      CGCCGCGACAGCTGT  76 193
LTC53_RS13215 3047354 .. 3047385 -  -7.3  -2.52464   CCCTGGCCGAACGTA     CCGCCAGCATGGGCG TGTT CGCCTATGC-G-CGG      GCCAATGCCCAGGCC  48 434
LTC53_RS13205 NONE
LTC53_RS13200 NONE
LTC53_RS13195 NONE
        murD 3040749 .. 3040762 -  -5.9  -2.57211   ACGGCGCCGGATAAG               CGGCG TGCG CGCCA                ACCCGATGCAGGAGC  46 48
LTC53_RS13185 3039505 .. 3039515 -  -8.2  -3.27525   CTGCCGGAAAGCGAA                 GCGG TGG CCGC                 ACTGCGCGGGTTGGC  59 283
LTC53_RS13175 3037787 .. 3037812 - -14.8  -5.24129   CGCGGGCATAAAAAA         GCCCGCTTCT GCCGGG AGAAGCGGGC          CGCGTTCGAGGCCAG 100 54
LTC53_RS13160 3034011 .. 3034029 -  -4.5   -3.0806   GCGAAACGCTGAACA             TCGCCGA TGCCG CCGGCAA             GTACGCGCACCTGTT  46 247
LTC53_RS13150 3029974 .. 3030004 - -18.3  -4.18018   CGCCGCCATCGAAAA       CGCGAAGCCCGGC GCGTG GCCGGGCTTCGTG       CATTGCGGGGCTGAG 100 53
LTC53_RS13145 NONE
LTC53_RS13140 NONE
LTC53_RS13135 3025635 .. 3025665 -  -8.8  -3.72893   GATTCGGTGATCAAA       GCGCAAGACCTGGC ATC GCCTAGCCACGCGC       AGACCCGGGAACGCG  65 515
LTC53_RS13120 3022781 .. 3022794 -  -9.5  -2.91997   GTCCAGATACAAGGA               GCGGC TTCA GCCGC                GACGAGCGGAGCGGC  56 298
LTC53_RS13115 3021099 .. 3021138 - -12.8  -2.73994   ATGCGGTCAAGACCA  TCCTCGCCGC-GCGCCGCA ACC CGCAGCGCAGCGACAGGGA  AACCGCGTACGTGGC  63 452
        gpmA 3015657 .. 3015674 -    -7  -2.51888   GCTGAAACCGAACAT             CGCATC CTCCTT GATGCG              GCACGTAGTGCCTGC  47 44
LTC53_RS13080 3015372 .. 3015398 - -11.4  -3.09516   GCGGCGACGACTGAA         CTTGCGCGCCGC CGC GCGGCGCGCTTA         CACCTCGGCGAGGAT  66 23
LTC53_RS13065 3010642 .. 3010676 -  -8.5  -2.70932   GGCGTTTTCCAAGCA    GCGGC-CCTTGCGGCG CATG CTCGGCAAGAAGCCGC     GGCTGTGGGCGTGGA  52 441
LTC53_RS13000 2990566 .. 2990578 -  -3.3  -4.03234   TTGGCGCCATAGAAA                TCGTC GCT GCCGA                TGAAGAACTGCAGCA  59 499
LTC53_RS12980 2987424 .. 2987438 -    -7  -3.36327   GGACTGGAGCGACAA               GGGCGG TGG CCGGCC               GCTGATCCAGCAGAT  55 390
LTC53_RS12965 NONE
LTC53_RS12960 2984019 .. 2984029 -  -8.2   -3.7948   CGAAGACGCAGCAAA                 GCGC ATC GCGC                 GTTCGGATCGCGTGT  68 72
LTC53_RS12955 2982683 .. 2982697 -  -4.2  -3.06796   CGGCAGGCCATGGAA               CGCTCG GAG CAAACG               GGAATCGGGCAATTT  44 225
        gltX NONE
LTC53_RS12945 2980454 .. 2980465 -  -7.2  -3.14344   CACCCTCGGCATCAA                GGGC CTGG GCCC                 GCTCACCGAGGAAGG  53 327
LTC53_RS12925 2975289 .. 2975314 -  -5.5  -3.53091   AGGCGTTCTCGGAAA         CCGACTTCAG CGACGAC CTGAAG-CGG         ATCGACGTGCCGGTG  52 437
LTC53_RS12915 NONE
LTC53_RS12910 2972355 .. 2972369 -  -6.4  -3.61517   ATGTTCGTCGAAGAA               GACGAC ACC ATCGTC               AACCCGCTCGGGGTC  57 280
LTC53_RS12875 2963145 .. 2963165 -  -4.5  -4.07687   ATGTGTGTGCGAAAA            TCCCCGCGC GGT GCACGGGTT            TGGCGAGGCCAACGC  62 84
LTC53_RS12870 2962884 .. 2962901 - -14.1  -5.75342   GGGCTGCAAAAAAAA             CGCGGCG CAAG CGCCGCG              TTCTTTCGTCCCGCT 100 52
LTC53_RS12840 NONE
LTC53_RS12835 2954870 .. 2954892 -  -3.2  -4.21438   CAGGCGAAGAAACAA           CGGCATGGGC ATC GCTCAGGCAG           TGCGGTGACGGCGGG  63 83
LTC53_RS12830 2953912 .. 2953928 -  -2.1   -4.3586   TCACCTATACGAAAA              CCGACAG CAA CCGCTGG              CTCGGCAACACAGCT  65 346
LTC53_RS12815 2952088 .. 2952125 -  -9.2  -3.53224   CAGCGCTGCGGCAAA  CGGTCGCAGCGCAGTGGGT CAG ACCC-C--CGCTGCGGCCG  CGCCCCCGCACAGCG  64 62
        ubiM 2950518 .. 2950562 -  -6.4  -3.05463   ATCTGTGTCAGGCAA CG-ATTTTTTGTGGGAGCGAC TTCA GTCGCTCCCACAATTGCTTCG CCAAGCGCATAGGAC  49 282
LTC53_RS12790 2946598 .. 2946614 -  -3.5  -3.55444   TGGGGACTCGGCAAA              GCCGGCG ATG CGTTGGC              GGCGGCCGCGATGGA  51 119
LTC53_RS12785 2945827 .. 2945839 - -10.5  -4.20106   AAATGCCAGTGAAAA                GCCGC GCC GCGGC                CGGCCTCACCAGTCC  85 31
LTC53_RS12780 2944653 .. 2944670 -  -8.4  -3.73068   CTGCGAAGCGAAGAA             CGCGCT GGAGTG AGCGCG              CCGGCGGCGCGGTTC  65 39
        rraA 2941004 .. 2941039 -  -9.6  -2.60283   CAGGGAAAGGAACAG    GCGCCGGCAC-GCTCAC GCC GGGAGCAACGCCTGCGC    GGCGACCAGCACCCC  54 2
LTC53_RS12755 2939355 .. 2939367 -  -4.7  -2.62616   GCACGTGCGAGAGCA                TCGGC ATG GCCGC                GCTCACGATGCGGCA  42 28
LTC53_RS12750 2938954 .. 2938978 -  -8.5  -3.66286   ACAGCATCGCAACAA          CCATCGCGC TCATTCC GCGCGGTGG          CAGCACACGCCTAGC  65 10
LTC53_RS12745 2938260 .. 2938280 -  -3.2  -3.01924   CATCCTTCTGCAAGA           CGCGCAGCG TAGC CGATGC-CG            GTGTCCTCGCCATGT  42 82
LTC53_RS12740 2936365 .. 2936398 - -21.1  -3.21218   ATGTTGCAGGAGCAA     CTTCAGCCGCGACAG AGTC CGGTCGCGGCTGAAG      CCGCTCCGACACTCA 100 38
LTC53_RS12720 NONE
LTC53_RS12715 2930450 .. 2930463 -  -3.8  -3.41982   AAAGCGACGAATCAA               CCTG ACGTAA CAGG                TCGCTGAAGCTGCCC  49 398
LTC53_RS12705 2926954 .. 2926972 -  -2.3  -3.11768   GCAGATGACGCAACA             GGCCATG GACAG CAGAGCC             AGGTGGATATCAATC  42 390
LTC53_RS12675 2923073 .. 2923091 - -11.6  -2.72511   GCCAGCTTGCTAAAC             GCGCCCGC GGC GCCGGCGC             AGCCAGGCGAGCCGC  62 1
LTC53_RS12655 2921524 .. 2921563 - -17.3  -3.14211   ACGCCGCCGCAGTAA TGAGCCAGCCGGCGGCGCA CTGC TGCACCGCCGGC--GCTCA  GCCCGGCGCTGCGCC  84 23
LTC53_RS12625 2915469 .. 2915489 -  -7.5  -3.61715   TACCCCGGCGAAGAA            GCGCGCGTA CGC TACGCGCAA            CTGCTGCAGCGCGCG  60 362
         map NONE
LTC53_RS12495 NONE
        dapD 2882968 .. 2883016 -  -7.3  -3.80114   CATCAAGCGAGTAAA GCCCCTCTC-CCGTCGGCGACC GCAGGA AGTCCCCGTGGGAGAGAGGGGG TGGGGTGAGGGTACG  64 174
LTC53_RS12485 2882323 .. 2882338 - -11.8  -3.54741   CAGCACTGCGGCAAA              CGCCGC ATCC GCGGCG               GGCGTGCCACGATCC  71 273
        dapE 2880053 .. 2880097 -  -5.7  -3.81414   ATGGCCAAGGAATAA GTGCGGCCAGGCG-CAGGCGGGC GGC GCCC-CCTGTCGC--GGCCGCGA GCGTCCGGCGCGATC  60 83
        asnB 2876384 .. 2876406 -  -6.9   -3.9461   GTGGCGCAAGAACAA           CCAGGCCGA CGCCT CCGGCGTGG           ACATCCAGCCGGAGC  63 194
         bfr 2872115 .. 2872132 - -12.7  -4.03321   ACAGCAAACAGCAAA             TCGGCCC TTTC GGGCCGA              TTTTTTTTGCCTCGC  83 115
LTC53_RS12435 NONE
LTC53_RS12430 NONE
LTC53_RS12425 NONE
LTC53_RS12420 2864457 .. 2864483 - -13.7  -3.85817   AGCGTGGCGCACAAA         CGAACCCCCGC AGCAG GCGGGGTTTCG         TCGTAGCCGGCAGCC  83 46
LTC53_RS12415 2862392 .. 2862413 -  -2.1  -3.74693   CGCGAGGCCAGGAAA           GCCGCCGGG CTCA CCCAGGAAC            AATTGGGTTTCGCGC  53 447
LTC53_RS12405 2861600 .. 2861613 -  -9.5   -6.2845   AAGCAGAAAAAAAAA               CCCGC TTCG GCGGG                ATTTTTTTTGCCTGG 100 280
LTC53_RS12390 2860359 .. 2860387 - -12.4  -3.85698   GGCGGTTCCCAGAAA       CGACGAGGCCCGC ATCA GCGGGCCG-GTCG        TTGCGGGAGTTCAGC  81 59
         rnr 2857779 .. 2857808 - -10.6  -2.71364   GCAGGGTGCGAACGA       TCGCGGCGTCCC CCAGGC GGCCCGCCGCGA        CGCCACACCGTCAGT  60 36
LTC53_RS12380 2857044 .. 2857062 - -11.7  -3.14683   ACAGGGTCCTAGCAA             GCCGCTG TGGCG CAGCGGC             GCCGAGCAGGCAGCG  66 203
        rlmB 2855981 .. 2856037 -  -7.8  -3.03441   GAGGAGGTCTGAACA TCCGTTCGCG-GCGGTCGCGCTGCGCT ACGC AACGCAGCACGACCGCACTCAGGCGCC GCAGCACACCCCATC  53 153
LTC53_RS12300 2842898 .. 2842918 - -10.3  -3.08966   GGAAAGGGGATGCAA            GGCGGCGAC CGC GCCGTCGCC            AGCGCGTCATCGCAT  62 130
LTC53_RS12295 2842135 .. 2842150 -  -6.8  -3.54424   GTCGACTCCTTCAAA              CCGCGA CGTT TCGCAG               GACCGGCACCAGGCG  58 5
LTC53_RS12290 2840538 .. 2840556 - -10.2  -3.84406   TGCGCATCAGAACAA             CGCGGCAC GCT ACGCCGCG             CGCCGCCCCTCCACG  74 16
LTC53_RS12270 2837412 .. 2837437 - -16.9  -5.47218   CTTGACGCAAAAAAA         TTGCGCCAGCG TTGC CGCCGGCGCAA          TCGTGATGCACTGCG 100 49
LTC53_RS12265 NONE
LTC53_RS12260 2835647 .. 2835687 - -10.2  -3.05844   TCCTCCACGCCAACA  CCGACGCGCACCCGCAGC GGCTA GCCGCTGGCACGCGGCCG  CGCCGGATCGGCGAT  60 5
LTC53_RS12255 2834351 .. 2834363 -  -3.3  -3.55563   ACCGCAGCCGCGAAA                CCGCC AGC GACGA                CCCGGCCCTGCAGGT  51 324
LTC53_RS12245 NONE
LTC53_RS12240 NONE
LTC53_RS12235 2832266 .. 2832277 -  -3.6  -3.28712   GCGGCTGCGGTACAA                CCGC AGCG GCGA                 CGCTCAGCCTCCGAC  47 29
LTC53_RS12230 2831834 .. 2831873 -  -7.7   -4.0156   CCACACGAAGAAGAA  GGGATGCGC-GGGCGGGC GCCAG ACCCGCCCTGCGCGTATC  GCGGCAGCGCGGCCC  68 102
       rlmKL 2829280 .. 2829297 -  -8.4  -2.94099   TGCGCTGACCACACA             GCGTCC GTACAA GGACGC              ATGGCCGTTGGCGAA  53 355
LTC53_RS12180 2816146 .. 2816193 -  -2.3  -2.61216   GGAGGAAGGAACGGA TCTGCGTGGCGTGCGGTCGCG GCAAGG CGGGAGCGCGCGCCGCGGCGC AGGCGGCGCTCAGAA  38 35
LTC53_RS12175 2814549 .. 2814605 -  -9.1  -4.11484   CCGAACTTGCGAAAA TCCCGAGTCCCGAGTCCCGAGTCCCGA GTC CCGAGTCCCGAGTCCCGAGTCCCGAGT CCCGAACTAAACGGC  75 32
LTC53_RS12150 NONE
        fdhD NONE
LTC53_RS12140 NONE
LTC53_RS12135 2806478 .. 2806490 -  -3.3  -5.33866   CAAATTTACAAAAAA                GGGAC TGG GTCAC                TGACCCTTTTAAAAT  89 369
LTC53_RS12115 2799495 .. 2799522 -  -7.6  -2.78463   ATTTCCTGGAGCAGA        GCCAGCGCCTGC TGCC GCAATGGCTGGC         GCGCAGCGACACGGT  49 450
LTC53_RS12095 NONE
LTC53_RS12090 2793136 .. 2793178 - -19.9  -4.57073   CATGGCGGGGAAAAA CCCCGCAGGGACGGCGCACA TCCC TGTGCGCCG-CCCTTCGGGT TTTTCCCGCCTGATT 100 158
LTC53_RS12085 2791608 .. 2791630 - -14.1  -2.82023   CATCCAGACTAACCA           GCGCCGGGC TATTT GCCCAGCGC           CTGCGCGGTGTCCTG  71 11
LTC53_RS12080 2789925 .. 2789946 -  -4.3  -3.14051   CCAGCGGCAGGAACA           CGCCGGC CTGGATCT GCCGGCC            GAGAAAACTCAGCGA  47 472
LTC53_RS12070 NONE
LTC53_RS12065 NONE
LTC53_RS12060 2784266 .. 2784276 -  -2.4  -3.06696   TCCCCGTGGAAGACA                 CCGC AGC GCGC                 GTTCGCCGATGCTGC  41 122
        potA 2783063 .. 2783081 -  -4.4  -2.78596   TAGCGCGGCAGCAGA             TGCGGCGG CGA CGGGCGCA             CTCATGCGGTCAGCA  43 27
LTC53_RS12050 NONE
LTC53_RS12045 2781262 .. 2781273 -  -3.6  -3.01726   TGCTCCTACAGAAAC                GCAG CGCT CCGC                 TAACCGCCCTGCTGC  44 25
LTC53_RS12040 2779201 .. 2779219 -    -3  -2.93991   GTGAACTCAACCAGA             TGCGCC TGGGCGT GGCGCC             GCTGCAGGACGTGCT  40 519
LTC53_RS11995 2770617 .. 2770635 -  -5.2  -3.73775   TCGAGCCGCATTAAA             TCCACTGC AGT GTAGCGGA             ACCCTTAACGCGCAG  57 74
        petA NONE
LTC53_RS11985 2768664 .. 2768677 -  -2.3  -2.71364   TCACGGGCTTAATCA               TGGGT GGTC ACCCG                CTCCGGCACCGGCTT  38 5
LTC53_RS11980 NONE
LTC53_RS11975 2767745 .. 2767770 -  -9.6  -2.93435   GCAACGATGCAGACA         GGGCGCCGGC ACCGCG GCCGACGCTC          AATGCACGTCCTTCC  56 24
LTC53_RS11970 2766936 .. 2766958 -  -4.6  -3.36569   GCAACTCGGGAAATA           TCGGATGCGC CAC GCGCGGCCGG           AGCATCAGGCCGGCA  51 30
LTC53_RS11965 2766394 .. 2766424 -    -9  -3.20573   GCATCGACACCAACA      GCGGACG-GACCA TCGCTC CGGCCACGTCCGC       GCCGGCGCGGACCCG  59 50
        purE NONE
LTC53_RS11935 2761560 .. 2761580 -  -8.1  -2.72463   AGCCACGCCCAACCA            CGCACAGGC ATG GCCGGGGCG            CGGCCGTCGGCACCC  51 43
        grxD NONE
LTC53_RS11920 NONE
LTC53_RS11915 2758838 .. 2758850 -  -4.7  -3.76492   TGGAAGTTGACGAAA                TGCGC ATA GCGCG                CCGTCCTGGTCGGCG  58 307
LTC53_RS11910 2755445 .. 2755464 - -16.4  -5.07652   CTCCGCAAAAGAAAA            CGGCCGGG TTAC CCCGGCCG             TTTCGTGTAACGCCT 100 55
        ppnN 2753767 .. 2753811 - -12.7  -3.07113   CATCACGGGATCGAA TGCTCGCCCGATGGCGGCGAG ATC CGCATCGCCATCGGCCAAGCC CACAACCGACTGAAG  66 210
LTC53_RS11895 NONE
        pilV NONE
LTC53_RS11885 NONE
LTC53_RS11880 2749931 .. 2749948 -  -4.1  -3.90762   GACCGGGTAAAAATA             GCGATTG GCCT CAATCTC              TTCGTAGTGGTATTT  59 310
LTC53_RS11865 NONE
LTC53_RS11860 2744784 .. 2744808 -  -7.7  -3.41051   TTAGGGGCATGACAA          GGGGGGCAAGG CAG CCTCCCCCCTC          CAGCGCTAAGCTTCC  59 48
LTC53_RS11855 2744633 .. 2744657 - -20.1   -4.8622   TGTTGCAACGAAAAA          GGGCTTGCGGA TGA TCCGCAAGCCC          TTGATATTTCTGGCG 100 36
LTC53_RS11830 2737521 .. 2737532 -  -2.2  -3.39216   TCGGGACTCAAAAAG                CGTC CCAT AACG                 GAAGTTTAGCCGGCA  46 104
LTC53_RS11825 NONE
LTC53_RS11820 2735401 .. 2735447 -  -8.5  -3.53224   GATGCGCTGTGGAAA CGCGCCAGCGGCGACACCGTCG GCGG CGACACCTACGCCGC-GCCGCG TCCGCCGCAACCGTT  61 278
LTC53_RS11775 2725464 .. 2725492 -  -2.9  -3.85698   TCGCTCCTGGAGAAA        GGGGGCTGCCGTC GGC GACGGCAGCGGAT        CGGTGTCGCGCAGCA  56 101
LTC53_RS11770 NONE
LTC53_RS11765 NONE
LTC53_RS11760 NONE
LTC53_RS11755 NONE
LTC53_RS11750 2723248 .. 2723271 -  -3.8  -2.52464   CCTGTTGGGAATGGA          TGGGACAGCGG CCG CCGCT-CACCA          CGGCAGCGCGAAGAA  40 20
LTC53_RS11745 2722404 .. 2722446 -  -9.8  -2.87132   GCCGGCGGCGACAGA GGCG--TGCTGCCCCGCCGCC GTGT GGCGG-GGGGCGGCGGTCGCC CGGGCTAAGGCATGC  59 30
LTC53_RS11740 2721249 .. 2721304 -  -7.2   -4.4009   TGGCAGCGGAGAAAA CGTCGTGCCTGCCGCGCCGCCGGCGC GCAC GCGAACACGCCGCCGGAGGCGCAACG GCAGGCGCCGGCAGC  75 60
LTC53_RS11735 2719888 .. 2719910 - -13.4  -3.41051   CGAGCCGCACGACAA           CGCGCAACGG CGC CAGTTGCGCG           GCATCATCGGCTTCC  76 372
LTC53_RS11710 2716691 .. 2716703 -  -4.8  -3.90112   TCTCGGCCAAGGAAA                GCCT GTTCA AGGC                CGCGTTCGGCGCGGT  60 237
        rpsF NONE
        rpsR 2714930 .. 2714942 -  -3.3  -3.07816   TTGCGACCGACGCAA                CGCAC GCT GTCCG                AATAGGACGGGGATG  42 83
        rplI 2714385 .. 2714414 - -22.3  -3.55444   GCCGGAGGCCGCAAA       CGAAACGGGCACC TTGC GGTGCCCGTTTCG        GTACAGCTGGAAACC 100 46
         smc 2710647 .. 2710660 -  -3.7  -2.62616   CCATGTCGGACATTA               CGGGG GTTA CTCCG                GCAGGGGTGCGTAGG  40 69
        zipA 2709857 .. 2709899 -    -6  -4.11484   GCGAACTTGCGAAAA TCCCGAGTCCCGAGTCCCGA GTC CCGAGTCCCGAGTCCCGAGT CCCGAACCTACCAAC  66 33
        ligA 2705732 .. 2705776 -  -2.9  -3.31144   CGGCGATCCGCAGAA CGAGCGCGATGGATGCAAG CCGCTCATC CCTGC-CCC-TCGAGCTCG CCGAGCAAGGCCAGC  46 4
        epmA 2704730 .. 2704767 -  -3.3  -3.93401   TCGACAAAGCAAGAA   CATGCTA-CACGAACCCG GTG CGGGTTCAGGCTCGCGCG   AAATCGTAGGCGAGC  58 13
LTC53_RS11660 2703884 .. 2703902 -  -7.3  -3.05384   GGCGGCGCCATGGAA             CGGCCGG ACCTG CAGGCCG             CGCTCAGTTGACGCT  51 29
        mtnA 2702540 .. 2702574 -  -6.2  -2.52464   CTGGTGGCTAATCGA     CCAGGACGCCGGCCCG CGG CAAGCGGGCCTGCCGG     CACCGAAAATCTACG  45 172
        gyrA 2699638 .. 2699666 - -22.5  -2.71712   CCCCGCGCTGGAAAC        GACGACGCCGACG TTG CGCCGGCGTCGTC        TACCGCTCTCGCTTG 100 46
LTC53_RS11640 2697631 .. 2697647 - -10.8  -2.70932   GTTCTGGCTCAACTA              CGCCGC CGCGC GCGGCG              AGAAGGACGAACAAC  59 441
LTC53_RS11600 NONE
        hutC 2688017 .. 2688039 -  -5.5  -3.97947   GGCAGGCAGGACAAA           CGCACGC GGCGGTATG GCGCGCG           GCGCGGGCCATGTGG  63 84
LTC53_RS11590 2685483 .. 2685503 - -10.3  -3.17075   CCCCGCCCAACCCAA            GCCGGCAGC AGC GCCGCCCGC            GCCAAGCACCTTGTC  60 467
LTC53_RS11570 2681433 .. 2681454 -  -8.7  -3.28712   GCCGCGCCTGGACAA           CACTGCGCG CATA CGCACAATG            CCTGATCTTTTCCAT  58 402
LTC53_RS11560 2680452 .. 2680470 -  -4.5  -3.33261   GGGCAAGCTGCACAA             GGCGATC TACGC GATCGGC             GTGCTGGCGGTGCTG  49 135
        serC NONE
        pheA 2676333 .. 2676347 - -11.4  -2.71745   CTTTGAATAAGTAAG               TCGCGC AAA GCGCGA               AAGCCTTTGCTCTTT  62 93
        aroA 2674387 .. 2674398 -  -7.2  -3.05384   CGCGCGGCGATGGAA                GCGG TGCG CCGC                 TGGCGCTTCCGTCCG  52 517
        serS 2672366 .. 2672384 -  -7.3  -3.02829   GATACTGCCGCAAGA             CCGGCGG TCGCG CCGCCGT             GCGCGGGGCCTGCGG  51 42
LTC53_RS11510 2670674 .. 2670701 -  -8.4  -3.14931   GTCACGCCGGACGAA        TGCATGCCTGCA TGCC TGCATGCCTGCA         GGATAGTGCCGGTAC  56 176
LTC53_RS11505 2670522 .. 2670540 -  -3.2  -4.92239   CCAAAAATCCAAAAA             GTGATT TTTAATC AATCAC             TTACAATGGATTGGC  77 37
LTC53_RS11500 2668987 .. 2669000 -  -2.3  -2.95056   ACAACAAACCAACGA               CGCAG TAAC CTTCG                ACCCAGGGCTTTATC  41 46
        uvrB 2661657 .. 2661679 -    -9  -3.57389   CAGCCAAGAACAATA           GCCGCCGGCA GGA CGCCGCCAGC           CTCGTGCCTAGCTGA  64 33
LTC53_RS11455 NONE
LTC53_RS11450 2660823 .. 2660839 - -15.1   -5.4833   GCACGCAACAAAAAA              GCGGCCG GAT CGGCCGC              TTTTTTGTTTTGAGC 100 521
LTC53_RS11425 2649989 .. 2650001 -  -4.7  -3.59262   CTGTAGAGTTTGAAA                GGCGC TAC GCGCA                GAGCCGCAACTGAGT  52 304
LTC53_RS11375 NONE
        cydC 2637492 .. 2637519 -  -9.7  -2.97825   AGCAACAACAGCAGA        TCGCCGACGGC CTGCGC GCCGGCGGCGC         GCAGGCGCAGTTCCT  59 488
LTC53_RS11315 2627929 .. 2627941 -  -4.7  -4.11216   TCGGGACTCGTAAAA                GCGGC GTC GCCGA                TTCGCGTTCTTGATT  62 70
LTC53_RS11305 2626322 .. 2626363 -  -5.8  -3.53091   AGGTGCTGCCGCAAA TG-GCGCAGGCTAGC-GACG CCGA CGCCTGCTGGGCCGCGCGCA CGCTGTACACGCAGG  55 180
LTC53_RS11295 2624384 .. 2624403 -  -7.8  -3.35996   CAGGGTCAGGGACAA            GGCCAGCGC AAG GCGC-AGCC            GTACGGGCATCCGGG  55 476
LTC53_RS11275 NONE
LTC53_RS11270 2619915 .. 2619950 -  -2.4  -3.96531   TGAGACATTGAGAAA    CTGGCGCGGACTGTAA TCGT TTTCAGCACGAGGCAG     AAGTGTTTTGTTAGT  56 203
LTC53_RS11265 2618842 .. 2618855 -  -2.3  -3.60979   CAAAGCGAAACAAGA               CGGCT GGGA AGCGG                ACAGCGGCGCCGCTA  48 38
LTC53_RS11260 2615723 .. 2615735 -  -5.5  -2.90615   ACGCGGTTGAAACTA                TCCCA TTC CGGGA                CCTGCTGCTGCGGCC  46 78
LTC53_RS11255 NONE
LTC53_RS11250 2612737 .. 2612754 -    -4  -3.09834   CAGCCGACCAGGGAA             CCGCGC TTCATG GCGCCG              CTCCCGCAGCCGGCG  45 15
LTC53_RS11245 NONE
LTC53_RS11240 2610903 .. 2610922 -  -3.5  -3.07816   CGCCGAGCGACGCAA            GCGCG TTCCCACACT CGCGC             ATTCCCCATGCCGTC  44 136
LTC53_RS11235 2607433 .. 2607471 - -21.3  -3.37537   GACTCGAAAAGCGAA  CCACAAAAAAAGCGCCGG CATG CCGGCGCTTTTTT-GTGG   CTGTTGCTGTCGCGT 100 159
        ugpC 2599382 .. 2599418 -  -6.4  -2.78384   GGTGCCGGCAGCACA   GGCTACGCAGGACGCGG CCGA CC-CGGCCTTCGCCGCC    GCCTGGCGCCACGCC  46 436
LTC53_RS11195 2598713 .. 2598734 -    -3  -3.53012   CCGCGTTGGCTCAAA           GCTGC-TCA GAAAT CGATGCAGC           GTCCGTTTTTTTCCC  49 9
        sdhC NONE
        sdhD NONE
        sdhA 2596070 .. 2596084 -  -3.5  -2.78384   GCTTTGGTCAGTACA              CGCGCG GTTT CG-GCG               GCACCACGTCAACGT  41 3
LTC53_RS11175 2595091 .. 2595128 - -14.1  -4.09864   AGCGACCGCCGAAAA   CGCGCGCGGCACCGAACC CGA GAGCCGGTGCCGCGCA-G   TCGGACGGGCCTGCC  85 65
LTC53_RS11170 NONE
LTC53_RS11165 NONE
LTC53_RS11160 NONE
        lolD 2592245 .. 2592257 -  -4.8  -3.43071   TCCTACAGGAAGCAA                GCGA CCGAC TCGC                CGGCTGCACTGTAGG  51 134
LTC53_RS11145 NONE
LTC53_RS11140 NONE
LTC53_RS11135 2587310 .. 2587340 -  -6.7  -3.15544   CGCGATCGTCACGAA       TCCGCACCGGTCA GCCCT TGGCCGGCGCAGC       GGCACCGCCGCGCGA  52 5
LTC53_RS11130 NONE
        msbA NONE
        lpxK 2584033 .. 2584058 -  -3.1  -4.42386   GCGTTACCGATAAAA         CCTGTCGCGAC TGAA GTCGCTCCATG          ATTCGCCTGCCGTGG  66 82
        kdsB NONE
LTC53_RS11110 NONE
LTC53_RS11105 NONE
        uvrC NONE
        pgsA NONE
LTC53_RS11090 2578291 .. 2578304 -  -8.1  -5.32944   GCCAGAACGAAAAAA               GGACC CGAA GGTCC                TGATTTCATCGTTTT 100 73
LTC53_RS11070 2573058 .. 2573090 -  -7.5  -4.52857   ACCCGCCAGACAAAA      GCCCCGGCGTCGCTG CCA CGACGAGACCGGGGA      TGCCACTCGGCAAAC  79 65
LTC53_RS11060 NONE
LTC53_RS11055 2570377 .. 2570404 - -14.9  -3.34013   TACGTGTCCAATCAA        GC-CCGCGCGCA ACGGG TGCGCGCGGTGC        TCAGCAATTCCTTCG  79 149
LTC53_RS11040 NONE
LTC53_RS11035 2566769 .. 2566785 -  -3.6  -3.73775   TGGATGTCTACGAAA              GGCTGG CCGGT CCAGCT              GTTGTCCAGTGATGG  54 122
LTC53_RS11030 2565459 .. 2565476 - -11.3  -3.57144   GTCGTCATGGTCAAA             CTGCTGC TGTT GCAGCAG              TTGTATAACCTCTCT  70 118
LTC53_RS11010 NONE
LTC53_RS11005 2559098 .. 2559112 -  -2.7  -2.57132   CGTGTCGTTCAGAAC               GCTGC TCCTG GCGGC               TAGGTGAACGCCCTG  39 149
LTC53_RS11000 2558664 .. 2558677 -  -5.9  -3.20349   TGCGCAAACGGAACA               CCACC CCAG GGCGG                CAAGCACAAGAATCA  51 152
LTC53_RS10990 2558327 .. 2558369 - -13.4  -3.05384   TCTCCGCCCACCCAA TCGCCTCGGGCGGGATAACG TCA CATTATCCCGCCCGACGTAT CAGTGTCCCACAGTG  70 51
LTC53_RS10980 2550258 .. 2550274 - -10.1  -5.67967   AGGAGCACAAAAAAA              GCGACCC GTC AGGTCGC              TTTCCTTTGCGCAAG 100 55
LTC53_RS10975 2549445 .. 2549460 - -11.8  -5.80817   CGCAACAGAAAAAAA              GCGGCC TTCG GGCCGC               TTTTTTGTCTGGGCG 100 166
LTC53_RS10965 2544332 .. 2544386 - -10.5  -2.83715   TGCAGGAGCAGCACA TGGCCCGGATCGCGCCGC-CGCGGCAG CAG CCGATGCGAGCGGC-CGAGCCGCGCCC AGCGCCGCGCCCGGC  57 139
LTC53_RS10940 NONE
LTC53_RS10935 2537872 .. 2537885 -  -4.5  -4.56597   GCCGCCGGCGAAAAA               CTGGC CCAC GCCAA                GGGCAAGGCCACCGG  75 520
LTC53_RS10920 NONE
LTC53_RS10915 NONE
LTC53_RS10910 2529231 .. 2529260 - -12.1  -3.02511   GCCATGTCGTGAACA       TTGTGGGAGGGGC TTCA GCTCCTCCCACAG        GTTTTCCGCGCGATG  67 93
         cmk 2523918 .. 2523941 - -10.9  -4.70879   GTGAAATGGGAAAAA          CCGCAGCGC GACATT GCGCGGCGG           AGCGTGGAACAACGG 100 136
        rpsA 2522078 .. 2522112 - -22.9  -3.29511   GCGATGGGGGTACAA     CCCGGCACGGCCCGG ATCGA CCGGGCCGTGCCAGA     AACGCTGCGTGTGGC 100 44
LTC53_RS10870 2521687 .. 2521697 -  -8.2  -2.69406   GGAGACACTAGATTA                 GCCG AAC CGGC                 GTGGGTTCCGGAAAA  52 74
LTC53_RS10865 NONE
        lapB NONE
LTC53_RS10855 NONE
LTC53_RS10850 NONE
        galU 2516274 .. 2516291 - -12.7   -4.8622   TTGGGCAACGAAAAA             GGGCAGC CCAG GCTGCCC              TTTTTCTTGCATCGG 100 108
         ndk 2511216 .. 2511227 -  -5.8  -3.57144   CCTCTTAGCGCGAAA                CCAC TTCG GTGG                 CGGCGAAGAAATACG  54 3
        rlmN NONE
        pilW NONE
LTC53_RS10810 2508311 .. 2508321 -  -2.4  -3.20382   GTTGAGATTGAGGAA                 CCGC GCC GCCG                 TCACTCGGACGCTGG  42 26
LTC53_RS10805 NONE
        bamB NONE
         der NONE
LTC53_RS10790 NONE
LTC53_RS10785 NONE
        moeB 2501807 .. 2501821 -    -7  -4.52589   CGCTCCTACAGAAAA               GCCCGG ATG CCGTGC               TCAGGTGTGGGCGCC  77 26
LTC53_RS10775 2499558 .. 2499585 -  -2.8  -3.48924   CCACGCCGGACACAA       CGACATCAGCGC CGACCC GCGCT-ATG-CG        CAGGCCTTGCAGGCG  47 159
        folD 2497464 .. 2497501 -    -4  -3.66654   CATTTTAACCTGAAA   GGCGAGTCCAGGCTAT GGGAGA AGAGCCGGGACTCGGG    ACCGGGGACCCGAAG  54 76
        guaB 2495884 .. 2495914 - -10.5   -4.2704   TCGACGATGAAGAAA      CGGCGA-GGAGGAA TCGC TTCGTCCGTCGCCG       TCCAACTGCTGTGCC  85 74
        guaA 2493987 .. 2494002 -  -4.6  -3.21695   GGACGATCAACCGAA              GCTTGC AACT GCATGC               GTACGCTACGCGCGC  49 267
LTC53_RS10745 2490818 .. 2490866 - -20.2  -3.28712   TGGTCTTGTGTAGAA CCGCCGCACGCTCGGCAGCGGC GCATT GCCGCTGCCTTACCTGCAGCGG CATGATCGGCGAAGC 100 111
LTC53_RS10740 2489103 .. 2489114 -  -3.6  -3.14132   GCTGCTGCTCATGAA                GGCG TATC CACC                 AGCAACGGCATCTCC  45 7
LTC53_RS10735 2487306 .. 2487338 -  -9.1  -3.05384   TGCTGCTGCACTGAA     CTG-GCGCCAGCAC GGCGCG GCGCTGGCGCACTG      TCGGAACGCTGCGGC  57 74
        mntR NONE
        tadA 2484785 .. 2484800 -  -4.6  -2.87211   ACCGCGCGCGATACA              GCGGCT TCAC AGCAGC               GGCTTCACATCCGCC  44 70
         orn 2484046 .. 2484061 -  -7.5  -3.11634   GGCGAGACCAGGCAA              GGGCC GCCGCT GGCCC               GTTGACGCAAGTCAT  54 91
LTC53_RS10700 NONE
LTC53_RS10695 NONE
LTC53_RS10690 2478312 .. 2478354 - -13.4  -3.14344   CAGCCTGGGTAGCAA CGTGAATCCTGGTTGGCGAA TTT TTCGCCAACCAGGCGGCAAG CCCTGCGCTGCAACG  72 236
LTC53_RS10680 NONE
        phaE NONE
LTC53_RS10670 2474421 .. 2474441 - -13.9  -2.50994   CCGAACGCCAGCAAG            CGCGCGCCG AGT CGGCGCGGG            AAGCACGCAGCGCGC  68 53
LTC53_RS10660 NONE
LTC53_RS10655 2473258 .. 2473301 -  -5.8  -2.65264   GCATCACCTACAGCA TGCTCGGCGC-CGGGCTGC TGCGCGC GCAGATCGAGCGCCGCGCG CATCCGCTGAAGCAA  45 71
LTC53_RS10645 2471676 .. 2471688 -  -3.3  -2.52896   GCATGTTCGAAGGCA                GATCG ATG CGAAC                CGTTGCTGGCCCGCC  39 77
LTC53_RS10640 NONE
LTC53_RS10635 2467484 .. 2467542 -  -9.4  -3.66654   GATTCGAACGCGAAA GC-CGAATCGGCGTGACC-CGGCCGGCG CGGGC CGCATGCCGCGGCCGCGCCGACGCACGC GTGCGCTCAGTTGCG  68 32
LTC53_RS10620 2462910 .. 2462927 - -12.7  -5.04249   CGCGCAAAAAACAAA             CGGCAGC CGAA GCTGCCG              TAGGTCCTGGTGCCG 100 33
LTC53_RS10615 NONE
LTC53_RS10610 2462162 .. 2462178 - -13.7  -5.60993   TCCCGCACAAAAAAA              GTCCGGC ATC GCCGGAC              TTCAGGTTTCTTGCA 100 48
LTC53_RS10605 NONE
LTC53_RS10600 2461865 .. 2461883 - -11.7  -5.25803   AACGCGGACAAAAAA             CACCCGG ACGTG CCGGGTG             TCTTGGTATGAAATG 100 39
LTC53_RS10590 2459739 .. 2459755 -  -5.1  -3.88498   CGGGCACACAGGAAA              GTCGC ATCCGCG GCGAC              AATGTGCGCGCGTTC  60 204
LTC53_RS10565 NONE
LTC53_RS10560 2453513 .. 2453532 -  -5.6  -2.60244   TTCTCAAGTAATGGA            GACTCCGGG ATT CCCGGGG-C            GGTTCACTCCTTGAG  44 132
LTC53_RS10555 2452231 .. 2452247 - -11.5  -2.72463   ATCGACTTTGAACCA              CCCCGGG TTT CCCGGAG              CCCCCTTGGTTTGAG  62 41
LTC53_RS10550 2450411 .. 2450427 - -13.7  -2.52896   GGATCGCCGAAGGCA              TCGCGCG GTT CGCGCGA              TTCGTGCGCCATCGA  65 235
LTC53_RS10535 2447054 .. 2447110 - -10.7  -3.05384   GTGGCGGCCACGCAA CGGTCGCTGCTCGCGACCAGATTGCGC ATC GGGCAATCTGGTCGTGAGCAGCTTTAT TCGCTATCGACCGTG  62 54
LTC53_RS10500 NONE
LTC53_RS10495 NONE
LTC53_RS10490 2388339 .. 2388378 -  -8.4  -3.11634   CTGCAGATCAGCCAA  CGCGGCGCTGGGGTGCAC ACTC ATGCAGCCCACCGCTGCC   GCAGGCGCGCAAGCA  56 6
LTC53_RS10485 NONE
LTC53_RS10480 NONE
LTC53_RS10475 NONE
LTC53_RS10470 2384027 .. 2384039 -  -6.2  -3.30124   CCTGAGCCTGGACAA                GCGG GCCAG CCGC                TCTTTGCCTTTCCAT  53 99
LTC53_RS10450 NONE
LTC53_RS10445 2377802 .. 2377834 -  -8.3  -3.65084   AAGTAAATTGCCAAA      GCATCAGCCCGCGCG AGC CGCGCTGATTGATGT      CGCCGCCCAGGATCA  65 237
LTC53_RS10425 NONE
LTC53_RS10420 2370459 .. 2370475 -  -2.1  -3.06162   GATTTCATTGCAATA              GGGCAAG AAT CGTGCCA              TTTAAACAAAGTTCA  41 493
LTC53_RS10360 2364184 .. 2364214 -  -8.3  -2.70932   TGGTCGTGGCAACGA      CTTGCCGCAGCGTG CCAA CACGCGGCAG-AAG       CCAGGACGTGTCCTT  52 65
LTC53_RS10355 2363221 .. 2363248 -  -6.8  -3.04144   GGCCGAGTTCGAACA        GCTGTTCCGCGC GCAT GCGCTGGCCAGC         CTGGACGCGGCGCTG  48 494
LTC53_RS10305 NONE
LTC53_RS10300 2350250 .. 2350266 - -15.1  -3.05816   CGATGTGCCAGGTAA              GGCGGCC GAC GGCCGCC              TTACCTGATCACACC  74 34
LTC53_RS10220 2334498 .. 2334512 - -12.8  -3.04322   GGGAAGGGCGTAAGA               CGCGGC TCA GCCGCG               GCGGAAGCGCAGCAT  67 17
LTC53_RS10215 2333088 .. 2333103 -  -3.2  -4.09511   AAGAGGTGCTCAAAA              GGCG AGGCTCAG CGCC               AGCGAGAACTGGTTC  59 4
LTC53_RS10210 2332334 .. 2332392 -  -5.7  -2.62184   GCTGGCGCGAGACCA GGCGCGGCCATGCCGATCAGCCGGCGCAC GCA GGACGCCGGCGG-CCGACGCGGCCGTGG- GCAGCGGCTGCAGGC  44 287
LTC53_RS10205 2331562 .. 2331589 -    -4  -2.78679   GGTCGGCAGGGAAAG        GTTGCGTGCG GATCAGAA CGCGCGCGAC         ACCGTCGCCACCCAC  41 10
LTC53_RS10200 NONE
LTC53_RS10195 NONE
LTC53_RS10190 NONE
LTC53_RS10185 NONE
        ccmD NONE
        ccmE NONE
LTC53_RS10170 2325409 .. 2325455 - -12.9  -3.80573   GCCAGCAGCAGGAAA CCGAGCAGCGGCAGCAGCCGGC TCAT GGCGA-TGCCGCCGCTGCGCGC GTGGCGACGGCTGCG  83 1
LTC53_RS10165 NONE
LTC53_RS10160 NONE
LTC53_RS10155 2323669 .. 2323694 -  -5.3  -3.65046   GCCTCAGGGCAAGAA         TCCGGCTGCTC TCCA GCGCAGGCAGA          GAGGAAGCCCCGAGA  57 94
LTC53_RS10150 2322807 .. 2322830 - -11.6  -3.06162   CACCGCAGGGCAATA          CCACGCCCGC AGGC GCGAGCGGGG           AGGGCGCCTAGTGAG  65 144
LTC53_RS10135 2315024 .. 2315042 -  -5.9  -3.44051   CGCCGAGGAGCAGAA             CAGCCCG CTGAC CGCGCTG             ATCGACCCGGGCAAG  55 374
        trxB NONE
LTC53_RS10110 NONE
         aat 2307024 .. 2307036 - -10.5   -3.5394   AAAGTTTGCGTTAAA                GCCGC TCA GCGGC                CGGCCAGTTCCGTGG  67 18
        infA 2306673 .. 2306689 - -15.1    -4.371   CCGATGAGACGAAAA              GGCGGCC GAG GGCCGCC              TTTTTCACAACCGCT 100 50
LTC53_RS10085 NONE
LTC53_RS10080 NONE
        mnmA NONE
        hflD 2301024 .. 2301081 -  -6.7  -3.53012   GTCCGCGCGGCGAAA CGTGCGCTGCATCGAGC-CCTTGCCGGC AGC GCCAGCGCCGCGCTCAGCCCAGCGCGCG GTCTACCGCGTCGAT  58 11
LTC53_RS10065 2299676 .. 2299708 - -11.2  -3.68222   GGGGAAGGGCAACAA     CGACAAG-CCCCGGC CGGG GCCGGGGACGGGTCG      CTTCATGATGCAGCA  73 58
LTC53_RS10060 2299231 .. 2299276 -  -8.2  -3.54543   AGGCACCTTCGGAAA GTTCCGGTCGCGGCTGAAGCC TACAG GGCTTG-GCGGCGCTCGGAAC TGCGACCGCACAGAG  62 45
LTC53_RS10040 NONE
LTC53_RS10035 2288583 .. 2288594 -  -7.2   -3.0634   AACGGCACGGCAACA                CCGG CACG CCGG                 GAGGGCCGCTTTTCC  51 66
LTC53_RS10010 2284649 .. 2284661 -  -4.7  -3.29043   AAGTCTGTGCCAGAA                CCGGG GTG CGCGG                TGCGGCGCGGTGGAA  49 110
        flgB NONE
        flgC NONE
        flgD 2283035 .. 2283045 -  -3.2  -3.71794   AGCGAAGTATTGAAA                 CCCA TGA TGGA                 CTCCTGTGGATTGGC  53 45
        flgE 2281813 .. 2281835 -  -4.8  -2.62616   CGAGTCCCGACATCA           CCATCAACGA ATA TTGATGATGG           TCTGAGTGACCTGAT  42 6
LTC53_RS09985 NONE
        flgG NONE
        flgH NONE
LTC53_RS09970 NONE
        flgJ NONE
        flgK NONE
        flgL 2273794 .. 2273822 - -13.9   -4.3208   CGGTATAACGCAAAA       GGCCCGGAGGCG TTGCCG CGCCT-CGGGCC        TTCGCTTATTAGAGT 100 52
LTC53_RS09950 2272282 .. 2272299 - -12.7  -5.83822   CAGACGCAAAAAAAA             CCCCTCC TTGC GGAGGGG              CTTCTAGTCGTGCTG 100 56
        fliD NONE
        fliS 2270219 .. 2270229 -  -8.2  -2.64416   GACGGCGATCATAAT                 GCGG CGA CCGC                 GGCGAATTCGCGCTG  52 8
LTC53_RS09935 NONE
LTC53_RS09930 NONE
LTC53_RS09925 2268495 .. 2268514 -  -2.1   -4.4078   GCGCTGTAAGGAAAA            TCCTTAC GCCGAT GTAGGGA             GAGCCGGTAGATCGT  65 146
        rpoN 2266938 .. 2266956 -  -3.8  -2.64099   GTCGTCGACCAGAAG             CACGGACA GTT TGTTCATG             TGCATTGTTTCCTTA  40 38
LTC53_RS09915 NONE
LTC53_RS09910 2265040 .. 2265053 -  -4.5  -3.16564   TGCGTAGCGCAGCAA               GCG-CG CGA CGACGC               GGTGACATCCGCAGC  47 57
LTC53_RS09905 NONE
LTC53_RS09900 NONE
LTC53_RS09895 NONE
LTC53_RS09890 NONE
LTC53_RS09885 2260805 .. 2260825 -    -4  -2.82623   CGGCGCCGATAATGA           GTGC-CCGA TCCA TCAGAGCAC            CGCCCCGCCGTCCAT  43 17
LTC53_RS09880 NONE
LTC53_RS09875 NONE
LTC53_RS09870 NONE
LTC53_RS09865 2257930 .. 2257940 -  -8.2  -3.05384   CGGGCGGCGACTGAA                 GCGC CTG GCGC                 GCGCTGGGTCAACGT  55 242
LTC53_RS09855 2252917 .. 2252928 -  -3.6  -3.53091   AGCGGTGTGCCGAAA                CGAC TGGC GCCG                 CGATCGCCCGTGCTC  51 212
        fliE NONE
        fliF NONE
        fliG NONE
LTC53_RS09835 NONE
LTC53_RS09830 NONE
        fliJ NONE
LTC53_RS09820 2245950 .. 2245972 - -13.4  -2.82623   CCCCTTCCAGAAGGA           GCGGCCGG CGTCAGT CCGGCCGC           GATGCTGCCGCTGGA  69 41
LTC53_RS09815 NONE
        fliM NONE
        fliN NONE
        fliO NONE
        fliP NONE
LTC53_RS09790 NONE
        fliR 2241140 .. 2241172 -  -3.4  -3.54424   GCGTAGTTGCGGAAA     CTGTATTCCTGCGCCG CCA CGGCGCCG-A-TGCAG     GCGCCATAGCGCGAG  49 258
LTC53_RS09780 NONE
LTC53_RS09775 2238188 .. 2238244 -  -9.2  -3.82191   GGAAGTGGAGAAGAA GCGCGCGCATTGCCGCGCCCTGTCCGC CGCG GCAGGC-GGCCATTGCGATGCACGCGC GCAGGGCGCGACAAT  71 85
LTC53_RS09770 NONE
        flhB NONE
        flhA NONE
        flhF NONE
LTC53_RS09750 NONE
LTC53_RS09745 NONE
        cheY NONE
LTC53_RS09735 NONE
LTC53_RS09730 2225463 .. 2225487 -  -6.5  -5.42259   GGAGCTGCAAAAAAA          GCCACTTTTTT TTA AAAAAATCGGC          CCTTTTTGCATCAAA  95 143
LTC53_RS09725 2224513 .. 2224528 -  -5.4  -3.17075   GTGGGGTCAATGCAA              GAAGCC GGCC AGCTTC               GATTCGATGTTGCGC  49 1
        motD NONE
LTC53_RS09715 NONE
LTC53_RS09710 2221270 .. 2221296 -  -2.2  -3.57144   CGGCGCATCGGGAAA         GTGCGGCA GGGTTGGCAGT TGCCGCCC         GGCGATGCCGGGGGA  48 207
LTC53_RS09705 NONE
LTC53_RS09700 2220528 .. 2220545 -  -4.8  -2.77182   GTGGAGAGGGAATCA             GCCCAG GACTTT CTGGAC              GGTGGCGATCAGCTG  43 5
LTC53_RS09695 2218074 .. 2218092 -    -3  -3.88498   TCGGGAGAGATGAAA             CCTTGGCT GTC AGCGACGG             CGTCGGGTCTGCGTT  56 424
LTC53_RS09685 NONE
LTC53_RS09680 2213024 .. 2213048 - -21.5  -3.56325   GTCCCAGAACGAGAA          TCGGCCGCGGA GAT TCCGCGGCCGA          CGGGGTGTCGCTCTG 100 106
LTC53_RS09670 2210466 .. 2210500 -   -15  -4.62336   ATTGCATCTCAAAAA     TTGAATCGGCCGCAGC GAG GCTGCGGCCGATCGGA     ACCTCATGCTGCGCC 100 58
LTC53_RS09665 2207500 .. 2207537 - -11.3  -3.37259   AAGTATCTTTAAACA   TGTCCGGCCGATG-GCGC GCG GCGGTCATCGAACGGACA   GTGCAACGGCGGTCA  68 153
LTC53_RS09660 NONE
LTC53_RS09655 2203881 .. 2203891 -  -8.2  -3.29461   CAACGCCCTGCATAA                 CGGC ATT GCCG                 AAGAAATGTCTTTAG  59 315
LTC53_RS09645 2201529 .. 2201579 - -11.2  -3.65812   GCCGGTGCAATAGAA TG-CCTGCCTGCTGCCGGCATGCC TTAGC GGCATGACGGCGGCAGG-AGTTCA GAACTCCTGCCAACT  73 23
LTC53_RS09640 2198588 .. 2198613 -  -6.7  -2.80816   GCTCGATGCAGCAGA         CGCTGCAACCC GAAC GGCCGGCAGCG          TGGCTGCCGGCATTC  50 137
LTC53_RS09635 2195595 .. 2195628 -  -5.2  -4.11394   ATCGGATGCCGAAAA    CAGCG--GGCAGGGCG CTTG CGCCATGCCTTCGCAG     TCGGCCCGCCGTTGC  64 156
LTC53_RS09630 NONE
LTC53_RS09625 NONE
LTC53_RS09620 2191619 .. 2191634 - -11.8  -3.54741   CAGCACTGCGGCAAA              CGCCGC ATCC GCGGCG               GGCGTGCCACGATCC  71 346
LTC53_RS09610 2189925 .. 2189943 - -13.1  -5.63517   TTCGGAAAGAAAAAA             CCCGCCG ATGGA CGGCGGG             TCGGGAATTGCGGGC 100 72
LTC53_RS09605 2189352 .. 2189391 - -18.5  -5.69262   TCAGAAAAACAAAAA  CGCCGCCTTGCCGGGGC GCATGG GCTCCGGCGAGGCGACG   CTTTGTCGTCTTACT 100 36
LTC53_RS09600 2186854 .. 2186874 -   -14  -5.40072   CGTCCGGCAAAAAAA            TCCCCGGC GCGTG GCCGGGGA            TCGGGAAGTGCATGA 100 61
LTC53_RS09595 NONE
LTC53_RS09590 2183655 .. 2183675 -  -6.8  -3.62597   TTGACGCCGGAACAA           GACG-CGGC CTGT GCCGGCGCC            GCTGCCGCGCTCAGA  61 36
LTC53_RS09585 NONE
        cheD NONE
LTC53_RS09575 2180872 .. 2180901 -    -5  -3.65812   GGTCCTGCAACACAA      TG-GCGGCA-GGCC GCAT GGCCGTGTCGCACA       GCGCGCACGGTAAGC  55 174
LTC53_RS09570 2178084 .. 2178107 -  -3.1  -3.38272   CAGCAGCAGCGACAA          CAGGAAACG GATCGG CATTGCCTG           ACAAAGGGTGAAAAT  48 98
LTC53_RS09565 NONE
LTC53_RS20045 2177629 .. 2177668 -  -3.5  -2.90723   TCAGCGGGAAGCACA GTTTGCC-GTCGGCATCGC GCAG GC-ATGCCGGCTGGCCACC  GCCGTTGGTTAGCGC  43 42
LTC53_RS09560 2176941 .. 2176965 -  -4.1  -3.17051   CGTGCATGACCAACA          TCGGCCACTTC CGC GCCGCGGCCAA          GCTGCTGGAAGGCAA  45 445
        acnA 2171096 .. 2171148 - -17.6  -3.14132   CGGCGCGTGCACGAA CGGCGATGCGTGCCCGCGCGAGCGC GACG GCGCGCGCA-GGACACGCGCCGTCG CGACCTCAGGCCGCC  86 31
LTC53_RS09530 2168761 .. 2168793 -  -7.6  -3.61398   GGGTTCTCGGAAGAA      TCGCCCGCGGAG AGGACGTGG CGCAGCGGGCGA      GTGCGTTTCCACCCG  60 136
LTC53_RS09525 2167526 .. 2167545 -  -4.9  -2.72379   GCAATGCCTCAACGA            TGCCGAG GGTTGT CTCGGCG             GCATGCAGGTGGCTG  43 352
LTC53_RS09485 NONE
        dgoD NONE
LTC53_RS09475 NONE
LTC53_RS09470 2155579 .. 2155625 -  -5.7  -3.66178   GCGCGCAATTCTAAA GCAG-TCGGCGCCGCCGCGTG GGGAATG CGCGCGGCCG-GCCGCGCCGC GCCGCGCCGGATCAG  57 37
LTC53_RS09465 2155106 .. 2155163 - -34.5    -2.752   ATGTCCAGATACAAG GAGCGGCTTCAGCCGCGACAGGC TTGACCGATGCT GCCTGTCGCGGCTGAAGCCGCTC CTACAAAAACTGCTC 100 83
LTC53_RS09460 2153781 .. 2153811 - -19.1  -3.85698   GGCCGTTGCGATAAA      CAGACACGGGCGCC GCAG GGCGCCCGTGTC-G       TTTTGGGGAAAGGTG 100 106
LTC53_RS09445 NONE
LTC53_RS09440 2150953 .. 2150981 -  -4.7  -2.65942   GGGACAGGGAAAGAC       CATCACCGCCTGC GCAGG GCAGG-G-TGATG       CGACGTGCGGGAAGC  42 49
LTC53_RS09435 NONE
LTC53_RS09430 NONE
LTC53_RS09425 2147857 .. 2147869 -  -4.7  -3.53091   AGCGGCCGCCGTAAA                CGCGC CTT GCCCG                ACGTTGCCGCGGACA  52 447
LTC53_RS09405 2145490 .. 2145502 -  -6.9  -3.57144   TCGCGGACCTGCAAA                CACCG GGA CGGCG                GGGCGATCCGATGCG  58 88
        thiD 2144313 .. 2144337 - -11.3  -2.92111   GGCGGAAAAAATTCA          GCCGGCGCTGC CGG GCAGGGCCTGC          GCCACGGCTGGCGGC  61 304
LTC53_RS09395 2144135 .. 2144153 - -11.8  -6.38039   CACGCAAAAAAAAAA             CGACAAAC CGG GTTTGTCG             TTTTTTTTTATCTGA 100 42
LTC53_RS09390 2143894 .. 2143913 - -12.2  -5.86332   GGAAGGCAAAAAAAA            CGACAAGC GCAG GCTTGTCG             TTTTGCATCTGACTG 100 39
LTC53_RS09375 2140893 .. 2140908 - -10.4  -2.75481   CGCCAATGCGAAGCA              TCCGCC ATCG GGCGGA               TGCTTCGTGTGCGGT  57 76
        glgX 2138432 .. 2138465 -  -3.7  -3.59979   GCGGGTGATTGCAAA     CGGGCGCCGGG GCGTCTGTCTTT CCCGGCGGCTG      CGTCCTGCGCCGCAC  51 86
LTC53_RS09360 2137551 .. 2137566 -  -6.2  -3.31144   CTTCGACCCGGAGAA              CTTCAA GCAG TTGAAG               GGCGAAGCGGCCCGG  52 227
        yhbY NONE
LTC53_RS09275 2120774 .. 2120790 -  -9.4  -2.79831   GGAATCCGGATCACA              CACCGC TCGGC GCGGTG              CAGGCTCAGCCCTCG  55 31
LTC53_RS09250 2117019 .. 2117049 -   -11  -2.77899   GCGGCGCAGGAATGA       GTCACGCGGCGCCG TTT CAGCGCCGCGCCAG       CAACACCAGCATCGC  60 11
        parE 2107605 .. 2107631 -  -9.5  -3.01712   TGCCGGTTCGGAACA        TTCA-CCACGGC GCTC GCCGCGGCTGAA         GACAGTTGTTCCTAC  57 118
LTC53_RS09200 2105573 .. 2105587 -  -8.5  -4.11216   TGGGGATTCGTAAAA               GCGCG TTCAG CGCGC               GCTGAAACCCCGCTG  72 75
LTC53_RS09185 NONE
LTC53_RS09180 2101081 .. 2101091 -  -6.8   -3.6471   GCGCAAAGTAGACAA                 GTCG CGG CGAC                 AGCGGCGGTTTTCAC  61 405
LTC53_RS09165 2098667 .. 2098683 -  -2.1  -3.36327   CGATGGCATGGACAA              CGTGCTG CAG CTGGACG              GCGGCATCCTCGGTT  45 241
LTC53_RS09150 NONE
LTC53_RS09145 2095493 .. 2095505 -  -9.1  -3.08015   TCAACGATTTCAAGA                CGGTC AAC GACCG                TTTCGGCCATCACGC  55 403
LTC53_RS09125 2089366 .. 2089413 -  -8.2  -2.73875   TGTTCGGCAAGACCA GCAGCACCGCCGCC-GAGCGTCG CGA CGGCTATCTGGCGGCGATGCAGG CGCACGGTCTGGCGC  52 412
        ptsP NONE
LTC53_RS09110 2085148 .. 2085158 -  -5.4  -2.79183   TGGAGTTCGAGGACA                 TTCG GTT CGAA                 GACATGGGGTGCGAC  45 48
LTC53_RS09105 2083273 .. 2083283 -  -2.4  -2.90763   GGGACATGGCAGAGA                 CTCC TGG GGTG                 GGATGGAGGCCGGCG  40 98
LTC53_RS09100 2081863 .. 2081896 - -29.7  -3.09015   GTGATACGGACCGAA     CGCACGACGCCCCGG CATG CCGGGGCGTCGTGCG      TTCTGGCCAGGTTGT 100 122
LTC53_RS09095 NONE
LTC53_RS09090 NONE
LTC53_RS09085 NONE
LTC53_RS09080 NONE
LTC53_RS09075 NONE
LTC53_RS09070 2075081 .. 2075093 -  -4.7  -3.33696   TTGGCGGCGAAGGAA                CGCGC GCA GCGTG                GCGGACAGGCGTTTC  49 53
LTC53_RS09065 NONE
LTC53_RS09060 NONE
LTC53_RS09055 NONE
LTC53_RS09050 2072031 .. 2072051 -  -8.2  -5.53436   AGACAACACAAAAAA            CCGCCAGC ACAAA GTTGGCGG            TTTTTTAATTAAATA 100 248
LTC53_RS09035 2069572 .. 2069614 -  -2.4  -3.43492   TGAGATCCATTATAA TGGCAACACTGCCGCAACCG ATG CGAATGCGGCTTGGTTGCTC GCTGCGGCACTCGAA  47 523
LTC53_RS09005 NONE
LTC53_RS09000 2062245 .. 2062262 -  -3.4  -3.18264   GCGCGCATGCAGGAA             GCG-GCA GCGGA TGCGCGC             GCATCTCAGGCCGAC  44 31
        metH 2059348 .. 2059380 -  -3.9  -4.56775   ACCTTCCCCCAAAAA      GGGGGCCATGGTCCC GGT GGGAGAAGGACGCCC      TCACTCCGGATCGTA  70 26
LTC53_RS08955 NONE
LTC53_RS08950 NONE
LTC53_RS08945 NONE
LTC53_RS08940 NONE
LTC53_RS08935 NONE
LTC53_RS08930 2048135 .. 2048150 -  -2.4  -3.66999   ATTGATCGATTCAAA              GCAGGA GGGT CCCGGC               CATTTTAGGCCGGGA  51 50
LTC53_RS08925 2047329 .. 2047353 -    -5  -3.57144   CGCCCGAGGCGTAAA         CCGG-AGC-CGC TGG ACGAGCTTCCGG         CAGATCGGCCAGTCA  52 353
        purB NONE
LTC53_RS08905 2042192 .. 2042228 -  -7.7  -3.29263   AGATCTTCGTCAGAA    CCTGAGCGCGGTGCGCG CTG CGCGGTACGCGGTCCGG    CCGCGAGCGGCCGGC  56 59
LTC53_RS08895 NONE
LTC53_RS08890 2038595 .. 2038616 -  -2.9   -3.2268   AGCAGAAAAATTATA           CCCCCATGAC GTA GCCA-GGGTG           TGCATTTCGCAGACA  46 93
LTC53_RS08885 NONE
        sucB 2034422 .. 2034440 -  -8.8  -2.79183   GGCAGCTGGATTACA             GGCCGAAC AGC ATCCGGCC             CGGGTTTTCCAGCTG  52 2
        lpdA 2032780 .. 2032809 - -18.7  -4.08216   TCATGGTCTCGAAAA       GA-GAACGCCGGGC GAT GCCCGGCGTTCGTC       AGTGGCCAGGGCTCT 100 55
LTC53_RS08870 2031975 .. 2031986 -  -7.2  -3.14463   AAGTCCCTGTAGGAA                CGGC TTCA GCCG                 CGACAGACGTCGTCC  52 145
LTC53_RS08860 NONE
LTC53_RS08855 2027012 .. 2027041 -  -5.7  -2.71144   CATCGCGCGCAATCA       GGCAACTGCGC CGATGTAC GCACAGTTGCA        AACGGCAGTGGGCAG  45 153
LTC53_RS08850 NONE
LTC53_RS08845 2024475 .. 2024500 - -16.9  -3.53444   GGATTGCGCCGGAAA         CGCTGCCGGCGC CTT GCGCCG-CAGCG         GTTGCGTGGGGCGCA  89 78
LTC53_RS08840 2024138 .. 2024169 -  -4.3  -2.89971   GTCAATAATTAATCA      CTGGCTCGCCGCGC GCATT GCGCAGC-AGGCGG      AGCTATCGCACCACC  44 69
LTC53_RS08825 2021603 .. 2021618 -  -4.6  -5.60993   CCTCCTACAAAAAAA              CGGTTC GCCG GAGCCG               CAAAGAAGTGCCGCT 100 90
        recN 2014023 .. 2014063 -  -8.9  -3.14564   GTACGTGCGCAGCAA  GCGCCCGGGCGCCAA GAAGGGCTGAG CCGGCGCCCGTACGC  GCGCGGTCGCGTGCG  56 498
        bamE 2012598 .. 2012639 -  -2.1  -4.21194   GTTCACCACTGAAAA CCG-GCTGCAGCGCCCCGAC CGC ATCGATATGCTGCTGCGCGA CGGTCCGTTCAAGCG  61 509
        smpB NONE
LTC53_RS20040 2011652 .. 2011675 -  -8.2  -5.42259   GGAGCTGCAAAAAAA          GCCGCTTTTT TTAA AAAAATCGGC           CCTTTTTGCATCAAA 100 56
        ssrA 2008108 .. 2008151 - -13.4  -4.52589   GCGCTTCATACAAAA CGATACCTCAAACGATACC TTGAAGG GGTATCGTTTGAGGG-TCG TAAATCACCAGAAAA 100 84
LTC53_RS08750 2004495 .. 2004531 -  -7.2  -3.44051   CGCCGACTACGAGAA   GGCGGTGCTCGGCGCGC TGGA GGACACCGAGAAC-GCC    TTGACCGCCTACGCC  58 490
LTC53_RS08715 1995635 .. 1995659 -  -2.8  -3.70307   CGCAGGCAAGAAATA         CCCGATCGCCG ACAA CAGC-ACCGAG          GCCGGCCGTGCGCAG  53 226
LTC53_RS08675 NONE
LTC53_RS08670 1985548 .. 1985593 - -10.4  -3.33671   ATACTCACTGGAGAA CGTGCGCTATCCGCAG--GCCG ACGG CAGCGTCTGCGGACTGCGCCCG CCGCTGGGGCCCGAT  63 405
LTC53_RS08660 1984342 .. 1984374 -  -5.4  -2.55074   TGCAACGCCAATCGA     GACGCGGGTGCGGCG CTGA CGC-GCTGCAGCGTC      AGGGGCAATTCATCG  44 58
LTC53_RS08655 1983730 .. 1983747 - -14.1  -4.72272   CGCGCGCAGCAAAAA             GGCCCGC AGTC GCGGGCC              TTTTTGCGTTGCGGC 100 56
LTC53_RS08645 1982695 .. 1982710 -    -4  -4.07687   AGCCGGCTGCGAAAA              TACAGC AGCC GCTATA               ACGGGGTCATCACAC  61 58
LTC53_RS08640 NONE
        sigJ 1975614 .. 1975625 -  -7.2  -2.77899   TCTTCGCAGCAAGGA                CGCG GCAG CGCG                 CGGCGGCGTGACAGT  48 65
LTC53_RS08615 1975114 .. 1975126 -  -4.7  -3.36492   GGCGTAACGGCATAA                GCCGC TGC GCCGC                TTACGGCATTGCCGG  51 26
LTC53_RS08610 1973790 .. 1973828 -  -3.1  -3.06261   GTGCAAGCGTGAAGA  CCTGTCCAGCAC-TGCAA CTTC CTGCATGCGCTGAATTGG   GCTTGGTCGGTAAGG  42 263
LTC53_RS08605 NONE
LTC53_RS08600 1971370 .. 1971384 -  -4.3  -3.60627   CCATGTCAGCTCAAA               TGAGA GGGAA TCTCA               TTTGTGGTGATGCAT  52 52
LTC53_RS08595 1970420 .. 1970433 -  -9.5  -3.05844   GGGTGCACTGTAAGA               GCGGC TTCA GCCGC                GACAACGTCCGAAGC  57 126
LTC53_RS08555 1964878 .. 1964916 -  -2.2  -3.65522   CAGCTACCTGAAGAA   CCAGAAGAACCCGAACTA TTT CAGCCTGGGCGCGTCCGG   CGCGGTGTCGGCGGT  50 429
LTC53_RS08540 1961024 .. 1961035 -  -7.2  -3.14878   CGGGGGAAGCGAACA                GCCG GGTA CGGC                 GTTAGGACGGCGCTT  52 27
LTC53_RS08530 1957936 .. 1957962 -  -2.9  -2.91264   GCGTGTACGCAGACA         CGCGGCGCT GCAGTTCCT AGCGCGGCA         GCACGCTTTCCGCCA  41 15
LTC53_RS08525 1956935 .. 1956952 - -14.1  -3.05596   CACTGTCGCACCGAA             GGCCGGG CTTG CCCGGCC              TTTGTTTTTCGCAGA  72 67
LTC53_RS08515 NONE
LTC53_RS08510 1954953 .. 1954984 -  -9.2  -3.03124   CTTCAGGGTCGAACA      GGCGCCAGCGGCGC GACG GCGCAGCCGGCGTT       GGCTCAGCGCGAAGC  57 29
        dbpA 1950929 .. 1950968 -  -8.4  -3.03771   CTACACGCTGGAATA  CGGCAGCGACCGCATCGAG ATG CACGCCGAAG-CGCTGCCG  GCCGGCGCGCGGGTG  55 305
LTC53_RS08480 1945443 .. 1945460 -  -8.3  -4.07687   ACCCCGCCGTGAAAA             GCGCGGC GCGG GCAGCGC              AAGCGACGTGCAGGA  72 43
LTC53_RS08470 1942539 .. 1942576 -  -3.4  -3.65351   GCAGGCCTATCCAAA  CCTGGC-CGGCTTCG-TGC AAC GCATCGA-GCAGCGCCCGG  CCTACCGGCGCGCGC  51 138
LTC53_RS08450 NONE
LTC53_RS08445 1938423 .. 1938437 -  -9.2  -3.53091   ATCCCGGCCCTCAAA               CCACCG AGC CGGCGG               CATGCCCCGAGGCCC  64 6
LTC53_RS08440 1936038 .. 1936064 -  -3.6  -3.65351   CGACGGTGAGCTAAA         GCCACCGCAC GAACCGA ACGCAGCGGC         TCATCACCCGCTTCC  54 98
      gluQRS 1934107 .. 1934135 - -14.5  -4.23213   CGGATAGGGAAGAAA        GAAGGGAGGGCCG CTG CGGCCCAACCTTC        GATTCTAGTCAGCCT  95 30
        phbB 1933225 .. 1933247 - -11.3  -5.47399   CGAACGGCAAAAAAA           TGCTGCGCA GCAGG CGCGCAGCA           TGAATGCACAGCACT 100 119
        phaR 1932564 .. 1932617 -   -13  -3.85817   AGCCGCTCCTACAAA GGGCGCGCGCCGTGCAG-GCGCGCTA CGGC TTACG-GCTCGGCTCGGCGCGCGCGC GACTTCGGTGCGGCG  83 1
        queG NONE
        xseA NONE
LTC53_RS08375 1921514 .. 1921531 -  -2.7  -3.78934   GTCGTTCCAGAAGAA             GTG-CGTC GCC GACATCAC             CGCCGCCTATGTGCT  53 428
LTC53_RS08355 1919242 .. 1919259 -    -4  -3.14344   CAGCGGGCGCACGAA             GCGAGG GCAGCA CCGCGC              CGCGTTGGCGCGGTG  45 49
LTC53_RS08350 1918678 .. 1918698 -  -2.4  -2.74144   TTTCCAGTCGCAAAT            GCAGACCG GGCAG CGGCGCGC            GCGCACCCAGTGTGG  38 78
LTC53_RS08340 1916257 .. 1916313 -  -5.6  -3.05596   GATTTGTGTATCCAA GCAGGACCGATCCGTGCGACCGGC-GCG TTG CGCCGCCGGCCGGGCAGCGCG-CGCTGC TCAGAAGTGCGCGTC  47 26
LTC53_RS08335 1915467 .. 1915486 -  -5.6  -3.34895   GGCACGGGCAAGCAA            CCCGTTCA GTTG CGCACGGG             CGCGGGCCAGGCTGG  51 85
         dxs 1913134 .. 1913159 -  -3.9  -2.74523   GCAGGCTGAACATCA         CTGGCGCCGC GCGATCT GCGGCGTC-G         CGCCATGTTGCTGAG  41 360
LTC53_RS08195 1886239 .. 1886295 -  -7.1  -3.15861   CACCAGGCGCACGAA GTCGCTCATCGGCGGCGCCTGC-AGCG GGGCG CGCAAGCGGGCGCGGCCAA-GAGAGGC CGGGCGGGGCAGGGC  52 137
LTC53_RS08190 NONE
LTC53_RS08185 NONE
        yeiP NONE
LTC53_RS08175 1883175 .. 1883188 -  -4.5  -3.78022   GTCAGAGCGACCAAA               GGCAT CTTG ACGCC                AGCGGACGCTAATGC  58 270
        serA 1877776 .. 1877787 -  -2.2  -3.76224   CCCGCACTCAGTAAA                GAAC CCTC GTCC                 GCACCGTTCCCGCGA  54 6
LTC53_RS08140 1874966 .. 1874985 - -11.4  -3.07962   CGCGAGATCTGAATA            CCCGCACA TGGA CGTGCGGG             CTTTTGCGAGGGACG  66 46
LTC53_RS08135 NONE
LTC53_RS08130 NONE
LTC53_RS08125 NONE
        mtnC 1871407 .. 1871431 - -11.3  -2.79098   GCGACGGAGGAAGGA          CGCGGCAGTGC GTG GCGATGCCGCG          GGGCACTCAGAACGC  60 32
LTC53_RS08115 1869910 .. 1869928 -  -5.9  -5.45802   TCCCGAAAACAAAAA             CGCCTCC ACGCG GGAGGCT             GTCGAAAGCGAATGA  95 482
LTC53_RS08110 1868074 .. 1868087 -  -9.5  -2.77182   TGGCAGATGCAAGGA               GCGGC TTCA GCCGC                GACGAACGGAGCGAG  55 381
LTC53_RS08050 1856120 .. 1856138 -  -5.8  -5.00616   GGGCTGGCGAAAAAA             TCGCCGGC GTC GCCGTCGC             AGGCTCACGCTTCGT  85 30
LTC53_RS08045 1855212 .. 1855230 - -10.2  -2.78463   ATGTGCTGCAGCAGA             TCCGCGCC GAG GGCGCCGA             GGCCGATGCGGGCGA  56 324
LTC53_RS08005 NONE
LTC53_RS08000 NONE
LTC53_RS07995 1842691 .. 1842703 -  -3.3  -3.10344   GGGCGAGGGAATACA                TGGGC ACA GCTCA                GTTCAACGTGCCGGC  44 23
LTC53_RS07990 NONE
        murB 1840588 .. 1840613 -    -4  -2.75064   GGCCGCACGCAATGA        GACG-GC-CTGG TTCA CCAGTGCGCGCC         GACGATGCGCGGTTC  41 11
LTC53_RS07980 1839624 .. 1839643 -   -10  -2.75382   GATGCCACGCAAGCA            CAGGCGCCG TAT CGGCGC-TG            ATGGAATCGATCGTG  57 79
LTC53_RS07950 NONE
LTC53_RS07945 1832107 .. 1832158 -  -7.2  -2.75064   CCGCCGAGGCAATCA CGCTGCCGCACATGCCGCTCGCGCC TGCTC AGCGCG-GCGGCTCGCGCTGC-G-G ACTGGGGCGCTTGGC  48 2
LTC53_RS07940 1829867 .. 1829891 -  -4.8  -2.71681   GAAGCGCGCCAACGA          GGCCGGCGCG CTGAC CGCGGCGATC          GGCTCGGTGGTGCTG  43 335
LTC53_RS07925 NONE
LTC53_RS07920 NONE
LTC53_RS07915 NONE
LTC53_RS07910 1820571 .. 1820586 -  -4.6  -2.56596   GGTTGCAGGAATTCA              GTGCAC CAGA GTGCGC               CGCTAGTATGTGGGA  42 28
LTC53_RS07905 NONE
LTC53_RS07900 1819791 .. 1819809 -  -5.2  -2.90194   AGTCGTGGAACCAGA             GCGCGTCA CAA TGACACGG             GCCGGGAATGCATGG  46 12
LTC53_RS07895 NONE
LTC53_RS07890 1819001 .. 1819019 -    -3  -2.90194   AGTCGGGGAACCAGA             GCGGGTCA CGA TGACACGG             GCCGGGAATGCATGG  41 12
LTC53_RS07885 NONE
LTC53_RS07880 1815763 .. 1815786 -  -9.6  -3.57144   CGCTGCAGGGCGAAA          CCACCGAGGTC GCC GACC-CGGTGA          CGCGCGCGGTACTGG  67 199
LTC53_RS07845 1809579 .. 1809596 - -14.1  -4.27316   GCCGCCAACGCAAAA             GCCCCGC ACAG GCGGGGC              TTTTGTGGTTTTCAC  91 58
        cysS 1780837 .. 1780859 -    -9  -2.76737   GATCAAGCGGTAAAG           CCCGGCTCCC CCC GGGAGAGGGG           AGGGAGGGTACGGGC  55 71
LTC53_RS07730 1780283 .. 1780315 -  -6.2  -2.66316   TCTGGTAGGACATCA     TCGTGCAGATGC-GG TAGG CCAGCACCAGCGCGA      AGCCGGGATGCGCCA  46 83
LTC53_RS07715 1776088 .. 1776102 -  -7.8  -3.14132   GTGGCGGCTCACGAA               CCGCTG CTC CAGCGA               TTCCCCATGCCGTAC  54 4
LTC53_RS07710 1775515 .. 1775553 -  -8.7  -3.04144   GCGCCAGGCCGAAGA  TCTGCGCGAGCCCGCGGC CTAG GCCGCGGA-TCGAGCCGG   CGAGCGCAGCGAGAC  55 5
LTC53_RS07705 NONE
LTC53_RS07700 NONE
LTC53_RS07695 NONE
LTC53_RS07690 NONE
LTC53_RS07685 NONE
LTC53_RS07680 1768906 .. 1768944 -  -6.4  -3.32844   GCGGCGACGCGACAA   GCGTGCGGCCGGCCGTGG TCT CCTCGGCTGCGCGCAAAC   GCTCGAACGCGTAGA  53 216
LTC53_RS07675 1767933 .. 1767954 - -15.9  -2.70932   TGTCGTGGTGAATGA           GGCCGGGAT GCGC ATCCCGGCC            TCACCGCAGGGTGAA  75 41
LTC53_RS07670 1766906 .. 1766922 -  -7.9  -3.02144   GGAGCGCTGGGAACA              CCTGCAG AAG CAGCAGG              GCGACTGATTCGCCA  53 330
        yidD NONE
LTC53_RS07655 NONE
LTC53_RS07650 NONE
LTC53_RS07640 1759429 .. 1759473 -  -3.4  -2.79796   TCGCATCCCAGGACA GCCGCTG-GC-AGTGCGCGCGC TCG GCGCAGGCTGTTGCGCAGCGCC ACGCTGTTGCGCGAG  40 296
        epmB 1752397 .. 1752415 -    -3   -3.5125   TCCCGAATGAAAAAT             GGCCGC GCGGATG GCGGCT             TTTTATTCGGTGAAG  49 124
LTC53_RS07580 1747263 .. 1747280 - -14.1  -5.44721   ATCAGTGCAAAAAAA             GCCGCGC ATCT GCGCGGC              TTTTTTGTTTCGAAC 100 115
LTC53_RS07545 NONE
LTC53_RS07540 1738697 .. 1738709 -  -9.1  -2.68072   CCGACCAGAAGGAAG                GCTGG TTG CCAGC                GAGTGTGGTGGTCGA  55 71
         upp 1737462 .. 1737479 -  -7.7  -3.41051   TCAGCTGGAGCACAA             GCC-GCAG TAT CTGCAGGC             CGCGCAGTCGCAACT  58 370
        htpG 1728917 .. 1728933 - -13.7  -4.67607   GCGCCAATAAACAAA              GCCGGCA GGA TGCCGGC              TTCGTTCTTCCACAT 100 61
LTC53_RS07485 1727647 .. 1727698 -  -4.3  -3.57144   TCGGCCAGTCCGAAA CGTGACATTGCAGATGCCGATGCCG TTCC CGG--TCGGCATCTGCTCAGGCGCG CCTTGCTGTAACGGT  52 91
LTC53_RS07375 NONE
        ftsY 1684506 .. 1684524 - -13.8  -2.62184   GGGCCCTCCAGAGCA             CGCGCGCC AGT GGCGCGCA             CGCTGTGCCCTGTCG  69 65
        mutY NONE
LTC53_RS07360 1682762 .. 1682772 -  -2.4  -3.25823   CCCGCTCGACATCAA                 GGCG CTG CGCA                 GCTCGGAACAGGAAT  45 225
         rnd 1677907 .. 1677923 - -13.7  -4.57569   TGATCGGTCGAAAAA              GGCCAGG CTT CCTGGCC              TTTTTTATCCGCGAT 100 272
LTC53_RS07330 1677081 .. 1677102 - -13.7   -5.5112   TGCAGCAACAAAAAA           GCCCCGGAG TCGC CTCCGAGGC            TTTTGTCTGAACAAG 100 41
LTC53_RS07295 NONE
LTC53_RS07290 1667745 .. 1667767 -  -5.4  -3.09834   TAGCGGAGCACGGAA           TTGCAGCGCG CAT CACGCTGCGC           CACTGCATGCCGGAG  49 49
LTC53_RS07285 1665965 .. 1665994 - -19.5  -3.14564   CCAGCGTCCCAGCAA       GAAAAAAGCGGGC TTCG GCCCGCTTTTTTC        TTGCGCGGCGTTTGC 100 329
LTC53_RS07155 1638359 .. 1638377 -  -6.7  -3.88787   GCATAGCGCCACAAA            GCGCGTCT GACC AG-CGCGC             CTGCGCAGGAACCGT  64 156
LTC53_RS07150 1637283 .. 1637307 -  -9.9  -2.72344   TTCGAGCGCGAAGCA          CCGCAGCTTGC TTA GCAGGCTGCTG          AAAAACTCCACAAGA  57 125
LTC53_RS07115 1629564 .. 1629577 -  -9.5   -3.5947   AACCTCTAGACACAA               GCGGC TTCA GCCGC                GACAGACATCCGACA  64 97
LTC53_RS07110 1628155 .. 1628182 -  -9.8  -3.55071   GCAGACCTCGGTAAA        CACCGCGCGC GCCAACCA GCGTGCGGTG         ATCGACATGGACATG  67 271
LTC53_RS07065 NONE
         asd 1617873 .. 1617894 - -10.1   -3.2614   CAGCTGCGACATCAA           GCAGTTGGC CAAG GCCAACGGC            CTGCGCGCGCCCGGC  63 275
LTC53_RS07050 1614236 .. 1614246 -  -8.2  -3.94184   AGACCGAAGAGGAAA                 CCGG CTA CCGG                 ATCGAGAACGTGCGC  70 449
LTC53_RS07040 1611861 .. 1611918 - -14.8  -2.57132   GGGCGGCTGGAGAAC CG-CGAGGCCGCGTTCCTGCTCGACGA ACTCG CCGCCGAGCAGCCACGCCGCTTCGACG TGGCGCAGGCGCGCT  69 481
        greB 1610098 .. 1610116 -  -8.8  -3.85698   CTGTGGTGGGAGAAA             GGCGTCGA TTA TCCACGCC             TGGCAGGTGCGGCCC  68 170
LTC53_RS07025 NONE
LTC53_RS07020 NONE
LTC53_RS07015 1608576 .. 1608588 -  -2.6  -3.40403   CTTCCGCCAGGACAA                GCGC TGCCT GCAC                GACCTGATTGCCGGC  47 234
LTC53_RS06995 1604060 .. 1604072 -  -6.2  -3.73224   CGACTGCGGATCAAA                GGCC GCCAG GGCC                GCAATCGTTCTTCAG  59 8
LTC53_RS06990 1600338 .. 1600358 - -10.3   -4.8048   GTTCCACACGAAAAA            CGGGCGACC AAT GGCCGCCCC            TTCGATCGCTGACGA 100 49
LTC53_RS06985 1596742 .. 1596777 - -21.9    -3.794   GGCGAACGCATCAAA    CGGCAAGGCCGCGCC ATTGCG GGCGCGGCCTTGGCG     CGGCTTGCCGGCGAA 100 46
LTC53_RS06975 1591412 .. 1591428 - -15.1  -5.60993   CGGCTTATAAAAAAA              CCCCGGC GGA GCCGGGG              CAGGAGAGAGATAAG 100 90
LTC53_RS06965 1587425 .. 1587443 - -13.1  -4.87133   AGCGCGCAAAGAAAA             GGCCCGG ACATG CCGGGCC             TTTTCGCGTTGCAGC 100 54
LTC53_RS06960 1585199 .. 1585236 - -18.6  -2.78384   GGGGCGGCCATCATA  TGC-G-ACGACGGCGCGG TTGC CCGCGCCGTCGTGCTGCA   CTGCTTGCCGAACTG  87 44
LTC53_RS06945 1581970 .. 1581983 -  -4.5  -4.56597   GTCGGCTCTGAAAAA               TCCCC GTCA GGAGA                TGACCGCCGCAACGA  72 18
LTC53_RS06910 1575092 .. 1575135 -  -5.1  -3.56643   TGCACATCGCGCAAA GGCGGAACTCGCGGGCATG GTCACG CATGAGCCCGTTTTCCGCC TTTTCCCCTTTGCGA  54 96
LTC53_RS06905 1572228 .. 1572256 -  -8.1  -3.01712   GTGCGTCGGCGAAGA        CGAACGGGTGG TCGGCTT CCACCTGCTCG        GCGACGGCGCTGACG  52 204
LTC53_RS06880 NONE
LTC53_RS06875 1566226 .. 1566245 -   -15  -4.86621   ATGCGCAACGAAAAA            GGCCGCTG TCTC CAGCGGCC             CTCGGTGTTGCCGGC 100 55
LTC53_RS06865 1564616 .. 1564672 -  -7.9  -2.80935   AGGGCATCGAGGACA CCATCTCCCACTACCAGGCCTGAGGCC GACGT GGCCCTTGGCCTGGCAG-GGG-GCTTG CCAAGGGCAGGCCGG  52 72
LTC53_RS06845 NONE
LTC53_RS06840 1559181 .. 1559206 - -11.2  -2.71364   CGAGCGCCTGAAGTA         GGCGCT-CGGT GCCGT ACCGTAGCGCC         GCGTCTGCGCGCCGT  60 197
        tilS NONE
LTC53_RS06830 NONE
LTC53_RS06825 1556102 .. 1556142 -  -5.4  -3.09516   TGGCGCAGGATCGAA TGCCTGCAGGCGCTGGA ACCGGCAA TCGGGCACCTGC-GGCA  GGAGCGTCCCGGCTG  49 272
LTC53_RS06820 NONE
LTC53_RS06815 NONE
LTC53_RS06810 NONE
LTC53_RS06805 NONE
        tssA 1548930 .. 1548944 -  -7.1  -3.85698   GGCGCCTGCGAGAAA               GCGGT ATCCA ACCGC               TGGGGCTTGCTCAAC  67 503
LTC53_RS06690 1520624 .. 1520665 -    -5  -3.60792   TGGGGAATCGGCAAA CGGCAATCGGTAGCGCCGC GCGCG GCGGCCATGACGAT-GCCG GTGCGATCGGCCGCT  52 124
LTC53_RS06665 1512091 .. 1512120 - -25.1  -3.86897   CGCATGGCGCAGAAA       CGACGACGGCGCC CGCA GGCGCCGTCGTCG        GCAAACTGGTGCGAG 100 47
LTC53_RS06660 1511193 .. 1511228 -  -7.4  -3.15579   TGAATTTTGGATTAA    GGCGACCCCGACGC GCGCTCCT GCAGCGGGGCCGCA     CCCGCATTCAACGGC  54 93
LTC53_RS06655 1508257 .. 1508276 - -16.4  -5.27938   ATCGGCAAACAAAAA            GCCCGGGC TCAG GCCCGGGC             TTTTTGTGTAGCGCA 100 51
        trxA NONE
LTC53_RS06605 1497988 .. 1498004 -  -5.1  -3.61398   GCCGGTGGCCAAGAA              TGTGCAC TTC GTGCAGA              TGCGATGGGGCAAGC  54 126
LTC53_RS06600 1497218 .. 1497275 -  -6.3  -3.13073   AGGCCGATGAACAGA CGAACCGCGCGATCGTCGAGCGTGC-CG TTGCG CATGCGCG-TCAGCGATC-CGCGGTGCG GGTGAACGGCACGCT  51 8
LTC53_RS06595 1496273 .. 1496300 -  -7.6  -4.18018   GGCGGTCAGCCAAAA        GACGGTA-CGGCC GAT GGCCGCCGCCGCC        GCTGCGGCAACAGCG  74 204
LTC53_RS06590 1494229 .. 1494281 - -16.3  -2.83112   ATCCAATGTAGCAGA GGCTTCAGCCCCGACCGCTTTTT TACCGGT AACGCCCGGTCGGGGCTGAAGCC CCTCCTGCAGGTGCT  79 52
LTC53_RS06575 NONE
LTC53_RS06570 1490788 .. 1490805 -  -7.7  -3.52341   AGCGCAATAGGAGAA             CGCAGTCG AAT CGAC-GCG             GGCTTGCGTCGCTTA  60 38
LTC53_RS06565 1490004 .. 1490019 - -11.8  -5.14563   CTCGGGATCAAAAAA              GGCGCC TTGC GGCGCC               TTTTTTGACTTTGGA 100 118
        metG NONE
LTC53_RS06550 NONE
        rnfB NONE
LTC53_RS06540 NONE
LTC53_RS06535 NONE
LTC53_RS06530 NONE
LTC53_RS06525 1483695 .. 1483724 -  -5.5  -3.82604   CGAGGGAAGGAACAA       CTGGCAGCGGCGG CCTG CCTACGGCGCCAG        ACGCAGCGTGCTGAT  60 14
LTC53_RS06520 NONE
LTC53_RS06515 NONE
LTC53_RS06510 NONE
LTC53_RS06505 NONE
LTC53_RS06500 1478273 .. 1478293 -  -3.2  -3.12327   CGCCCACATGCAATA           GCGGCCAGG CATT CATGGC-GC            AGTTCCGGCGATGCG  44 17
LTC53_RS06495 NONE
LTC53_RS06490 1476234 .. 1476263 -  -2.1  -4.66609   GATTTGATGCAAAAA       GGGCCGATTTTTT TAAA AAAAAAGCGGCTT        TTTTTGCAGCTCCGG  70 168
        mprF 1471850 .. 1471861 -  -5.8  -2.79183   TCTACCGCCACTACA                GCCA CCTG TGGC                 AACGCGGGCGGGTGG  46 495
LTC53_RS06440 1466690 .. 1466702 -  -3.3  -2.60496   TCTCCCGGTAAACAT                GGGGA TGG TCACC                GCGGTTACGCGTAGT  39 30
LTC53_RS06435 1465280 .. 1465292 -  -3.3  -3.25823   GGTGCGCGACACCAA                CGGCA ACG TGCTG                CAGGCCGGCGACACC  47 258
LTC53_RS06425 1464424 .. 1464455 - -21.6  -4.09243   GATATCCCCCCAAAA      TGCACCAGGCCCGC GATT GCGGGCCTGGTGCG       GTTGCAGCCGGGATG 100 48
LTC53_RS06420 1462785 .. 1462804 -  -4.2   -5.0133   GACGCGTGTAAAAAA            CGTGACGC TGAA GCGTGACA             GGGCATATTACGCCA  81 144
LTC53_RS06415 NONE
LTC53_RS06410 NONE
LTC53_RS06405 1461416 .. 1461441 -  -7.5  -3.01712   TCGGCGCCGTGAAGA         CGGCGCCG-ACA TCG CGTGCGGCGCTG         CCGCCACGCGCGGAC  53 41
LTC53_RS06400 1460575 .. 1460587 -  -3.3  -2.70932   CGCGCCGCTCAAGGA                TCCTG TTG CAGGC                TGTCCCAGCGTTCGG  40 6
LTC53_RS06395 1459753 .. 1459771 -  -5.8  -3.05384   CTTGTCGGCAGGGAA             GGGCGCGC GTC GCGCTGCC             GCGGCGTGCGTGACC  47 126
LTC53_RS06390 1459419 .. 1459452 -  -7.3  -3.03124   GTCGATTCCCGAACA     GGTGCGTGCTGCTCGA GGA TCGATC-GCGCGCCCC     AGGGATCAGTCGTCG  51 31
LTC53_RS06375 NONE
LTC53_RS06370 1456981 .. 1456998 -  -4.7  -3.28712   CGCCGCTGCTCAGAA             GCGCCCG CCGC CGGGCAG              ATAACGCCATTCGCC  49 2
LTC53_RS06365 1456226 .. 1456269 -  -8.1  -2.82491   CAGAGACCCACCACA GCGAGGCGCTG-GCACGGCGG CGGC CCAGCGCGGGCAGCGCCT-GC TCGGCTCAGATCGCG  52 31
LTC53_RS06360 1455438 .. 1455462 -  -6.3  -4.08216   GCAGCCGGCGGAAAA          GATCCGCGCGC TCA ACGCCTGGATC          AAGCAGTACGCGCAA  66 284
LTC53_RS06345 1450888 .. 1450916 - -11.8  -4.83615   CATTGTCTACAAAAA       CAG-CCCTCCTGC ATGC GCAGGAGGAACTG        TCGGTGCACGCCTGT 100 71
LTC53_RS06310 1437771 .. 1437796 - -20.5  -5.40072   GGCTGCGCAAAAAAA         GCCTCTCCCGC AGGC GCGGGAGAGGC          GGTGGCGTCCTGCCT 100 260
LTC53_RS06305 1436004 .. 1436018 - -11.4  -2.64616   GCGCTATGGACAGGA               CACGCG CAT CGCGTG               GCCTGTCCAGGTCCA  61 67
LTC53_RS06300 1435388 .. 1435404 -  -9.3  -3.25823   CCTGCGGCACAGCAA              GGCGCCG GAC CGGTGCC              ACACACTGCGCTGTC  61 392
LTC53_RS06290 1433067 .. 1433083 -  -5.7  -3.68529   AGCCGAGGATGCAAA              GCGCGAG GAT CCCGCGG              CGGCGCAGCTGCTGG  61 464
LTC53_RS06270 1427247 .. 1427260 -  -4.5  -3.28712   GCGTGTTCTCGAGAA               CCG-GC AGG GCGCGG               CGATACGCACTCTAT  49 109
LTC53_RS06265 1426406 .. 1426430 -    -2  -2.78384   GTCGCCGCGAGTATA         GGCAG-TGCCG TTCT CGGCGGCTGCG          CACGCCTCGCGTGGG  38 150
LTC53_RS06260 1424623 .. 1424641 -  -2.2   -5.0925   GCGCAAAACGAAAAA             CGCGACGG GTT CCGGAACG             GGTCCTGATCGTCGC  79 179
LTC53_RS06255 NONE
LTC53_RS06245 1418830 .. 1418843 -  -9.5  -3.07816   CGTTTAGTTAGGCAA               CGCGC TATT GCGCG                CCCTCAACATGATGA  57 104
LTC53_RS06240 1418398 .. 1418429 - -19.6  -3.66874   CCAAGCGCAGGCAAA      GAAAAAGCCGCTGG CGAA CCAGCGGCTTCTTC       AGACGTGCCTGAAGC 100 50
LTC53_RS06235 NONE
LTC53_RS06230 1415630 .. 1415655 -  -4.5  -3.14132   GCTCGCGTTCAGGAA         CGCCGCCAGTG CAGC CGGTGGTGGCG          CAGCAGGTCCCACGT  47 55
LTC53_RS06225 1414966 .. 1414979 -  -2.3  -2.72263   ACACGCTGTGGAAAG               TCGGC ATGT GCAGA                GTGTAACCAGGCAGC  38 219
LTC53_RS06220 1413227 .. 1413239 - -10.5  -3.18264   GGTGGCAGGCAGCAA                GGCGC AGC GCGCC                TTCCCATCGCGACGC  62 49
LTC53_RS06215 NONE
LTC53_RS06210 1411915 .. 1411927 -  -2.6  -2.68719   GCAGGAGATGAGAAT                CCAC GCTGA GCGG                TTTACACGCAGGTGC  38 246
LTC53_RS06205 NONE
LTC53_RS06200 NONE
LTC53_RS06195 NONE
        pdeM 1406059 .. 1406079 -  -3.1  -3.05463   AGCGTCGGGACTGAA            GTCCCTCCC ACA GGGATGATC            TGAGTCTCCAGGACT  42 46
LTC53_RS06145 1397670 .. 1397694 -  -7.8  -3.01712   GCCGGTGGCCGAAGA         CCTGCC-CGGC CTGC GCCGCGGCATG          CGCGTGGTGCTCATG  52 342
LTC53_RS06095 1386245 .. 1386259 -  -9.2  -3.30124   GGGTATTCCCGATAA               CGCCGC GTC GCGACG               GATGTCGCTCCGGCG  61 89
LTC53_RS06090 1383704 .. 1383721 -  -4.1  -2.74012   CGATCACGCCAAGCA             CGACGGCC AGG GGC-ATCG             GCGGGTGCATGCGCA  40 503
LTC53_RS06075 1380138 .. 1380170 -  -5.4  -3.53224   TATCGTTCGCCGAAA     CCGCGCT-GCCCGCC GAGC GGCTGGCGATCGCCG      GGATCGGTGCATTCT  52 302
        mutS 1375438 .. 1375461 -  -7.4  -3.65351   GTACCCTCACCCAAA          CCCATCTCTCC GAA GG-GAGAGGGG          CTGAAGACGCGCCGC  63 42
        katG 1371088 .. 1371109 -  -5.7  -4.18494   GACGCTCACGCAAAA           CCGCCCCGG CAAG CCAGAGCGT            TCGCGTGTGTCGCGT  69 136
LTC53_RS06035 1368426 .. 1368444 -  -7.3  -3.64703   CTGCCTCGATCGAAA             GGCGGGC GCTCA GCGCGCC             GGATCCTGCGCGATC  61 16
        ccsA 1361055 .. 1361071 -  -8.7  -3.34517   AGCCGCTCCTAAAGA              GGAAGCA GGG CGCTTCC              GGGGCTACCGCGCAG  58 44
LTC53_RS05985 1357602 .. 1357625 - -14.6  -5.60993   CGGCGCATAAAAAAA          CCACGCCGAC CTGC GTCGACGTGG           TTTGGACGACCAGCC 100 91
LTC53_RS05975 1355178 .. 1355190 -  -9.1  -2.77899   TTTCGGCATGAAGGA                CGCGA TCG TCGCG                GCGCAGGCGGCAGAC  52 372
LTC53_RS05920 1341172 .. 1341191 -  -4.2  -2.57132   TGCCTGCCGGACAAG            GTGATGCC CGAG GACATCGC             GCGCATGGCGCTGTT  40 490
LTC53_RS05910 1338210 .. 1338238 - -11.7  -2.92192   GCTGACGCAAGGACA        GGACATGCGCATG GCG CGTGCGGATGTCC        AGCCTGACCGCGCGC  61 364
LTC53_RS05895 1335047 .. 1335094 -  -3.2  -3.57144   GTGTCCACGCCGAAA GTGGCGACGCTGGACAACG-TCG AGG CGATCATGGACCAGCGGCAACGC TTCTTCGTGCGTGTG  51 470
        sctU NONE
LTC53_RS05835 1323008 .. 1323024 -  -3.7  -2.88544   GCGCATCGCTATACA              CCGAT GCGCCCG ATCGG              CGCCAGTTCGACATG  43 2
        sctP NONE
        sctQ NONE
        sctR NONE
        sctS NONE
LTC53_RS05810 NONE
LTC53_RS05805 1318567 .. 1318581 -  -2.1  -3.03159   CGAATGTCTCGAACA              TGG-CG GTGT CGTCCA               GTGTCAGGGGGAGAT  41 29
LTC53_RS05800 1318157 .. 1318170 -  -8.1  -3.33696   GTCGCGGTTAATGAA               CACGC TTGC GCGTG                GCTCCCCACGGCATC  56 177
LTC53_RS05795 1317718 .. 1317745 -    -4  -3.34716   TCAGCCTCGAAAAAG        CCGGTTGGTTCA TCGT TGCGCGAACCGG         TGTTCAATTGGAGTT  47 106
LTC53_RS05790 1316972 .. 1316994 -  -7.6  -2.50935   ACGGGAGCCAGGAAG           GGGCGAGGCA TGG TGGCTCGCGC           TGTCGAGCACAGCAG  49 291
LTC53_RS05785 1315406 .. 1315428 -  -6.9  -3.97057   GACAAGCGAAGCAAA          CCGCG-CGGC GACG GCCGGCGCTG           GAAAAAAGTGTGGAC  66 272
LTC53_RS05780 NONE
LTC53_RS05775 1312678 .. 1312694 -  -2.1  -3.86252   TTTTAGGAAACACAA              CGCAGTG TGG CAGGGCG              CTCCAGGGCGATCGC  54 50
LTC53_RS05715 1299541 .. 1299566 - -10.3  -2.68072   TGCATTAGAATCAAG         GGGTTGGCCGG GTTT CCGTCCAGCCC          TTTTTCATGCCCGCC  57 434
LTC53_RS05685 1293120 .. 1293136 -  -2.1  -2.71364   TCAGTGCCGGAATCA              TGCAGCC GTT GACCGCT              TGGGCCGCGTTGATG  38 169
LTC53_RS05680 1292336 .. 1292347 -  -2.2  -4.33417   GGTACCTATAACAAA                GACGG CTG CCG-C                GGTTAGCAAGCCTCC  65 300
LTC53_RS05675 NONE
        rpsT 1288654 .. 1288669 - -11.8  -4.81551   CACGCACACGAAAAA              CCCGGC CGAA GCCGGG               CTTTTTCGTAGTGCC 100 77
LTC53_RS05650 1287203 .. 1287229 -  -8.1  -5.42259   GGAGCTGCAAAAAAA         GCCGTTTTTTT TTTTT AAAAAATCGGC         CCTTTTTGCATCAAA 100 69
        uvrA NONE
LTC53_RS05630 1282543 .. 1282568 -  -9.1  -5.28176   CGGAGCTAGAAAAAA         GCCGCTTTTTT TTTA AAAAAATCGGC          TCTTTTTGCATCAAA 100 124
LTC53_RS05620 1281023 .. 1281035 - -10.5  -2.82516   CTGTCCACGATTATA                GCGGG CGG CCCGC                GCCGGCCTGCGTGCA  59 49
        tesB NONE
LTC53_RS05610 1279525 .. 1279540 -  -2.5  -4.17132   AAACCCTGCAAGAAA              CAGCA TGCCTT TGCCG               CCGCCGACTCAGTTG  62 34
LTC53_RS05600 1277473 .. 1277494 -  -5.7  -3.24825   TCAGGGCAAGCAACA           GGGCGCGTG GGTT CATGCGCGC            ATATTCGCATGCGGC  51 160
LTC53_RS05595 1276169 .. 1276188 -  -7.8  -3.19463   GCCAGCATCGACGAA            GCGC-GGCA AAT CGCCCGCGC            CGCCGCCACCGCATT  53 84
LTC53_RS05585 1273245 .. 1273261 -  -2.3  -4.25104   GGGGTGTGAGCAAAA              TATATCA CTT TGATATC              GTTTTGCAAGGGGGG  62 229
LTC53_RS05580 NONE
LTC53_RS05575 NONE
LTC53_RS05570 NONE
LTC53_RS05565 NONE
LTC53_RS05560 NONE
LTC53_RS05555 NONE
LTC53_RS05550 1268394 .. 1268414 -  -6.7  -3.09015   CCGATAGCGATTGAA            GCCGTCGTG GTT CCCGACGCC            GCTCGTCGCGGCTGA  52 222
LTC53_RS05535 NONE
        pqqA NONE
        pqqB NONE
        pqqC NONE
        pqqD NONE
        pqqE 1259850 .. 1259893 - -17.5  -3.04263   AGTGTAGTCGCAAGA CGC-GGCGCCGGCGCCGCGTGC ATG GCA-G-GGCGGCGGCGCCCGCG CTGGTCCGAAATGGG  82 58
LTC53_RS05505 NONE
LTC53_RS05500 1257408 .. 1257433 -  -9.1  -5.42259   GGAGCTGCAAAAAAA         GCCGCTTTTTT TTTA AAAAAACCGGC          CCTTTTTGCATCAAA 100 94
LTC53_RS05490 1252133 .. 1252150 - -14.1  -3.77196   CTACCACGCATGAAA             GCCGGCG GACA CGCCGGC              TGCGACACCGACGGC  83 288
        recQ 1249956 .. 1250008 -  -7.7  -3.91911   CGTACGCCAAGGAAA GAG-GGGCTGGAGGGCGGCG-GCAGC CGCC GCTGCGCGCCACCATC-AGCCGACGC TATCAATAGCACGTT  68 132
LTC53_RS05480 1249363 .. 1249421 -  -5.8  -3.12351   GCGCCCGACAGGGAA GTTCAGTGCCGCGCGTG-GTGCGTCGGC CCGAT GCCGACGCTCGCATGC-CGCCGCTGCGC CGGCGGCTTGGCCGC  49 40
LTC53_RS05390 1231236 .. 1231273 -  -8.4  -3.42147   GCCAACCAATACTAA   CGGCGTGTGCAACGGCA TCGCT TG-CGCTGCAGCCGCCG   TCGGCTTTGCAACGT  60 220
LTC53_RS05375 1227727 .. 1227762 - -21.2  -3.53091   AGGGCGTCCTGGAAA    TGCAAACGGCCCGGAG TCGC CTCCGGGCCGTTCGCG     TTCCTGCACAGCGTG 100 43
        gshB NONE
LTC53_RS05305 1203980 .. 1203994 -   -10  -2.53263   CTCACCTCCAACCCA               TCTCCC GGC GGGAGA               AGGGCTTGTGCGGCG  56 47
LTC53_RS05275 1191988 .. 1192003 -  -6.8  -3.02511   TCTACTTGTGGAAGA              TCGCCG ATCT CAGCGA               CGCCGCCAAGCCGCC  48 439
LTC53_RS05245 1186581 .. 1186601 -  -4.5  -2.81133   GATTCACCGACGACA            CGCTCAGTC CCC GGCCGGGCG            CGGAGCCCGTTGCAG  44 8
        minC 1185793 .. 1185803 -  -3.2  -3.67141   ATAATTTCAGCCAAA                 GGAA TGT CTCC                 TGATGCGTTCGGTTG  53 51
        minD NONE
        minE 1184668 .. 1184724 -  -9.2  -3.18321   ACCCAGAACGCAACA TCGGCGCTGCAGCACGCCGCGGCCGC TGTCG GCGAGCGCAACGCGCTGCATTGCTCA GGGCGACGGCCCTTC  59 23
LTC53_RS05225 1183526 .. 1183538 -  -4.7  -3.32844   TCCGGCATTGGAGAA                CGGCG GCG CGGCG                TAGTGCATTGCCGCG  49 461
LTC53_RS05210 NONE
LTC53_RS05205 NONE
LTC53_RS05200 1176381 .. 1176400 -  -7.1  -3.16564   CCTGGACGGCAGCAA            CGTCGCGC TGCTG GCGCG-CG            CGCGCGACAGCGGCC  53 382
        raxX 1169395 .. 1169435 - -14.1  -3.06261   CCCCAACCGGGAACA CCCGGCAATGCCCGGGCGAG TTGT CCCGCCCGGG-A--GCCGGG TCTGTTTACATGTCT  72 107
        gcvP 1166108 .. 1166134 - -20.9  -5.24129   TCGGTCCACAAAAAA         CGCCAGCCCCG GCGTG CGGGGCTGGCG         TGGCGAAGCGCGGCG 100 54
LTC53_RS05150 1162877 .. 1162891 -  -9.2  -4.34402   GCCTGCACAGCAAAA               CCGCGC CAT GCGCAG               GCAGGACGCGTTCCG  83 66
LTC53_RS05110 1147712 .. 1147741 -  -7.9  -3.15544   CGGCATGCGGAGGAA      GTCGCACTGCGCC GTTCTT GGCGCAG-GCG-C       TGCAGTGATAGCGCG  54 150
LTC53_RS05100 1143542 .. 1143571 -  -6.4  -2.72344   GCGCATCCGCAAGCA      GGCGTATCTGGCGC ATCT GCGCCAGG--CGCC       GGATGTAGTGCTGTT  46 430
LTC53_RS05085 1141962 .. 1141994 -  -3.1  -2.62184   GTCTGCTCGAGACTA      GCGCGGTGGGGTGGC GAT GCAACTGCCCAGCGC      GGTCTTGAGGTCCTG  39 89
LTC53_RS05080 1141016 .. 1141065 -  -3.5  -3.32698   GGATGCTATAGAACA CCTGCAGCAGCATCGCTC-GCAG CAACTT CTCCGGTGCGATGCTGGGGC-GG CCGCCCTTGGCGCTG  47 253
LTC53_RS05070 NONE
LTC53_RS05065 NONE
LTC53_RS05060 1137320 .. 1137359 -  -7.7  -3.04144   TTCCTAGCGCGAATA  GCGCAGCCACGCACTGT GGACGA AGAGCGCGAGGCCGCCC   CGAAAGTGCGTGCGG  53 422
LTC53_RS05030 1130351 .. 1130362 -  -7.2  -3.17075   CCTGCGCCAATGGAA                GCGG ATTG CCGC                 GAGATCCACCAGACC  52 94
LTC53_RS04970 1116345 .. 1116362 -  -4.1  -3.57144   GCGCGCACCCGGAAA             GCGGTGCG CAT CACACC-C             ACCCGGGGGCGTCTA  51 38
        pilH 1115819 .. 1115841 -  -9.2  -5.42259   GGAGCTGCAAAAAAA           GCCGTTTTTT TGA AAAAATCGGC           CCTTTTTGCATCAAA 100 93
LTC53_RS04950 NONE
LTC53_RS04945 1112856 .. 1112877 - -18.7  -5.60993   CTTGCCACAAAAAAA           GCGCCCGGC AGGT GCCGGGCGC            TGGATGTGCATGCGC 100 54
LTC53_RS04935 1108661 .. 1108671 -  -8.2  -3.28712   CGCCTCGCTCGAGAA                 GCGC TGA GCGC                 GCGGTTCGCCACGCA  58 322
LTC53_RS04880 1086861 .. 1086913 - -16.2  -3.01712   TGGCGGTGGGCAATA GGTG-CGAACGGCG-GGGGCGCCTGC TGC GCAGGCGCCCCACTCAGCCCGACGCC ACGCCATCGGGCATC  79 13
        lexA NONE
        imuA NONE
LTC53_RS04865 NONE
LTC53_RS04860 1080855 .. 1080866 -  -5.8  -3.76952   TCGACTCAATGGAAA                TCGC GGCT GCGA                 ATGTCCAGTCCGAGC  60 4
LTC53_RS04850 1079552 .. 1079564 -  -4.7  -3.32343   GGCATATCTGCAGAA                GGCGC CGG GTGCC                AAGACGCCCAAGGGT  49 355
LTC53_RS04835 1077322 .. 1077340 - -10.2  -3.28001   CATCCGGAAAGCGAA             GTGGGGGC GTT GCCGCCAC             GCAAGCTGGCCGAGC  63 258
LTC53_RS04825 NONE
LTC53_RS04820 1075773 .. 1075784 -  -4.4   -3.6543   CAAGGCTCGAAAAGA                TGCA GCTT TGCA                 AGGATGAGTGGGTGC  55 391
LTC53_RS04740 1062720 .. 1062737 -  -8.3  -3.21099   TTGGCCGACCAGCAA             CTGGCCG GCTA CGGCCTG              GCCTTGCAGCCGGAG  56 129
LTC53_RS04720 NONE
LTC53_RS04715 NONE
LTC53_RS04710 1054189 .. 1054211 -  -3.3  -2.61728   ACGGGGAACAGCAAT           CGGATCTTC ATCGA GATGCTCCG           GTATGCGGACGGTGC  39 10
LTC53_RS04705 1053616 .. 1053633 - -12.7  -4.35524   CGGGCAAACGGAAAA             CGCCGCT TTTC AGCGGCG              TTTTCTTCTCCATCA 100 64
LTC53_RS04680 1049809 .. 1049826 - -11.3  -5.46657   TACGCTAACAAAAAA             CCCCTGA TTTC TCAGGGG              TTTGCGTAATCTGGC 100 37
LTC53_RS04675 NONE
LTC53_RS04670 1048040 .. 1048057 -  -3.3  -2.71731   GGCATGCTCCAAGGA             TTGAGCG GCTA CGCCCCA              GCTTGGTGGCTTCTT  40 54
LTC53_RS04660 1047543 .. 1047557 -  -9.2  -2.62184   GTTGTCCTCACAGTA               GGGCCA CAT CGGCCC               AAAAATCATCGGTCA  54 3
LTC53_RS04655 1047124 .. 1047141 -  -5.5  -4.13014   GCCACATGGCGAAAA             CACTGCC AGGC GGTAGTG              CCACTTTTCTATGCT  64 34
LTC53_RS04645 NONE
LTC53_RS04640 1044344 .. 1044354 -  -2.4  -3.96148   CGCGTCCACCAGAAA                 GCGG TGC CGGC                 GTTTGGGCAGCGGTG  56 295
LTC53_RS04635 NONE
LTC53_RS04630 1041762 .. 1041794 - -15.5  -3.61103   GAACGCGACGGCAAA      GCCGTGCCCGTGCCC GCG GGGCACAGCCACGCC      CAGGCACAGCGAGAG  83 413
LTC53_RS04620 1040264 .. 1040282 -  -2.3  -4.16016   GCAGGTCGGAAGAAA             TGCCACA CAGGC TGCGGCC             AATCCACTGAGTCTT  58 192
LTC53_RS04615 NONE
LTC53_RS04610 1038580 .. 1038609 -  -2.9  -3.70068   CAGCACAAGGGCAAA       TCG-TAGCGAAC AGGTTGA GTTCGCTATCGC       TGCTTAGCGCCTCGG  53 82
LTC53_RS04605 NONE
LTC53_RS04600 NONE
LTC53_RS04595 1035910 .. 1035923 -  -3.8  -3.89346   CGGCGAGTTCACAAA               GCCA TGGGAG TGGC                GCAAAGGAGTGAGGC  57 170
LTC53_RS04555 1024194 .. 1024217 - -13.2  -2.53263   CCGACCGCCAAGTCA          CCGAGCGCCTG AAG CAGGCGCT-GG          CGCTTCTCGACGTCC  65 417
LTC53_RS04540 1021984 .. 1022003 -  -7.1  -3.03124   GCGCACTCGGGAACA            CCGATGC CAAGGT GCACCGG             GCAACGATTGGCGTC  52 133
         ffs 1018608 .. 1018624 -  -7.9  -3.40403   GGTGCGCGACCACAA              CGACGGC CGC GCGGTCG              ATGGCCTGCGCTACG  58 411
LTC53_RS04485 1013524 .. 1013542 -  -8.8  -3.90112   GCCGGTCGAAGCAAA             GGCGCC ACCCGTG GGCGCC             TGGGCGCTGACGCGA  70 179
LTC53_RS04480 1013179 .. 1013206 -  -6.9  -4.18018   CGTCCTGAGCGAAAA        GTCCGGGAGGC TTGAGC GCCTCCCGCAT         TGGCCCATGCGGGCC  72 156
LTC53_RS04465 1011172 .. 1011196 - -11.4  -2.57132   CTGGGCGTGGACAAC         GCGCACCG-GC AGTT GCACGGCGCGC          TGCTCGATGCGCAGA  59 485
        gloB NONE
LTC53_RS04440 1007310 .. 1007357 -  -6.3  -3.27653   ATGCCGATCAGAATA TCC-CGAGGTGAGGCGCAGATGC GCAG GCACGTGCGCGTC-CGTCGCGGA GCGGGGTAGCGGGGG  53 232
LTC53_RS04360  995416 ..  995433 - -14.1  -5.86976   GCAGAAAACAAAAAA             GGGCGCC ACCA GGCGCCC              TTTTTTGTTACCGGC 100 103
LTC53_RS04340 NONE
        phoB NONE
        phoR NONE
        ppk1 NONE
         ppx  985851 ..  985862 -  -5.8  -3.05463   AGTCCCGTCAGTCAA                GCCA CAAA TGGC                 CGGAAATTGATCCCC  47 10
LTC53_RS04315  985643 ..  985655 -  -4.7  -5.60993   CCTCCTACAAAAAAA                GCGGC TGC GCCGG                AGCTGCAAAAGAAGC 100 2
LTC53_RS04310 NONE
LTC53_RS04305  983564 ..  983588 - -10.1  -5.42259   GGAGCTGCAAAAAAA          GCCGCTTTTTT TTT AAAAAATCGGC          CCTTTTTGCATCAAA 100 157
        lpxH  982414 ..  982450 -  -9.4  -2.82623   GGTGCGTGAGAAGCA   CGGCGACGGCTGTCCGGG CGA CCCGCAGA-CCG-CGCCG   GTCAGGGACCGCTAC  53 182
         tdh  971250 ..  971275 - -16.2  -3.33815   ACCGTCGCGAACGAA         GAAGGGCGCC TTGTTT GGCGCCCTTC          TTTTTGTACGCTCGC  82 103
         kbl NONE
LTC53_RS20025  964466 ..  964480 -    -7  -3.33696   CTGCGCGCCAAGCAA               GCGCGG CTG CTGCGC               CAGGGCGACAAGCAC  55 313
LTC53_RS04190 NONE
LTC53_RS04185 NONE
LTC53_RS04180  957526 ..  957546 - -12.5  -4.65895   TGTGCCATCGAAAAA            CGTCGCGCA TCC TGCGCGCCG            CCCTTCGGGTTTTCG 100 201
LTC53_RS04175  954928 ..  954950 -  -7.6  -3.07113   CAGCAGGCCAGCGAA           GCGGCGAAGT TCT ACATCGCCGG           CGTCGCCGACGGTGC  52 207
LTC53_RS04165  952867 ..  952899 -  -7.6  -3.16564   CCTGCACCTGACCAA     CGG-CTTCGGCGGCG GCAT CATCGCCGACGGCCG      GCTATTCCGCGGCCA  53 433
LTC53_RS04155 NONE
LTC53_RS04150  948535 ..  948545 -  -8.2  -3.84639   GAACAGGCACAACAA                 CGCC GAT GGCG                 GCCGACCGTATTGGC  68 164
LTC53_RS04145  947191 ..  947206 -  -8.2  -2.73875   CGCGTTGCAACAGGA              GCCAGC TCAC GCCGGC               GACGAGGAGCAGGAC  52 152
LTC53_RS04140  945660 ..  945677 -  -6.9  -3.19513   ACAATCGCAACTGAA             CCCTGAC GATT GACAGGG              TTCACCATCCGTGTG  52 106
LTC53_RS04135  944942 ..  944963 -  -4.3  -2.91264   CTCCGCACGGACAGA           GGGCAGGCA AGCG TACCCGGCC            TGGCGTGCGGTTGGC  44 61
LTC53_RS04130  944087 ..  944122 - -11.1  -3.53091   ACGCGCTCGGGCAAA    CTGCTGCGGCGTTCGC TGCAG GCGCTCGCCG-AGCAG    CGCGAGCCCGGTGAT  69 214
        typA NONE
LTC53_RS04085  935834 ..  935851 -  -9.1  -2.74144   TGCGGATCGGCAAAC             CGGGC-GG GTG CCTGCCCG             CAGACGCTCAGAGCG  55 33
LTC53_RS04070  930498 ..  930510 -  -3.3  -3.86015   CAGTTGCCTCAGAAA                TCCTG CTG CAGGC                TCAGGTAGACGCCAC  56 6
        hemA NONE
        prfA NONE
LTC53_RS03790  883910 ..  883924 -  -2.7  -4.09243   GAGATGTTGCGAAAA               TGGCG AGTCG CGCCG               ATGACGTTGCGCATC  59 274
LTC53_RS03775  879716 ..  879730 -    -7  -2.52896   GTAGCGCTCAACCTA               GCGGGC CCA GCGCGC               CGATCGCGATTGGGT  47 3
        ampR NONE
LTC53_RS03755  876182 ..  876211 -  -8.5  -3.54029   GGGCACCAAGCAGAA       GATGGCCGAGGTCG CGC CGACCCCG-CCGCC       GCCGGTCAAGCCGCT  63 457
LTC53_RS03745  871882 ..  871907 - -13.2  -2.91681   CGCCAATGGCACAGA         CCGCCCCCGC GCTGCG GCGGGGGTGG          TCTGTGCCGGGTGCG  69 59
LTC53_RS03740  869263 ..  869286 - -18.2  -3.55444   CGGTCATGTGCGAAA          TCCTCCCCCG CGAA CGGGGGAGGA           GGTCAACCCACAGTG  90 54
LTC53_RS03735 NONE
LTC53_RS03730  868403 ..  868433 -  -5.3  -3.15861   TACGACCTGGACGAA      CGCCTGGCGTCGGCG GTG CGC-GTGGCC-GGCG      CCGATGGCGCCGCCG  47 471
        ahpC  866445 ..  866470 -  -2.4  -2.74792   TGACGATGGGCAAAG         CGCGGGGAAG GCGTTG CTGCCGCACG          GGCAGATCGCCGTAA  38 176
        ahpF  864797 ..  864821 -   -20   -3.0362   GGGAAACAGCATAGA          CCCCGCGCCG GCTCG CGGCGCGGGG          CAGGCAGGTCAGGCC 100 34
LTC53_RS03705  863737 ..  863755 - -11.6  -2.75844   CCGTGGACTGTAAAC             CGGGCGTC AGC GTCGCCCG             TGCGCCTTGCGCCAA  62 56
LTC53_RS03700  862578 ..  862596 -  -4.4  -3.45366   CTCGGAACGAATGAA             GTGAAGGG TAG CCCTGCGC             ACGTTAACGCGTTGC  51 318
LTC53_RS03690  861539 ..  861558 -   -15  -5.44119   TGCACCTCAAAAAAA            GAGCGGCG TCGC CGCCGCTC             TCGGCCGCACTGACA 100 53
LTC53_RS03660  857444 ..  857487 -  -8.1  -3.60792   GCCGCAAGCGGGAAA CGGTCGG-CGCGGCGC-GATTG CGT CAGCCCGCGCCGTGGCCG-CCG GTCCAGGTGTCGCGC  60 4
LTC53_RS03655  856117 ..  856151 -    -5  -3.06492   CGAGGGAGCGGAAGA    CG-GCGCCCTG-TCGC AACCG GCGAGCAGGGCGAACA    GCGCAAGGCTGATGC  45 114
LTC53_RS03650  855747 ..  855776 - -16.5  -2.87132   CTTCCGTGCGAGAGA       CCGCGGCCATG GTAGCGCG CATGGCCGCGG        CGCCGGCAACTCAGC  79 36
LTC53_RS03645 NONE
LTC53_RS03640  854768 ..  854784 -  -3.5  -2.63164   GGACATGGAAGGAAG              CCTTCGC CGG GCGGCGG              TCAGTAGCGGGGGCT  40 26
        rlmM  853383 ..  853410 -  -8.4  -2.53876   TTCGACGCCAAGGTA        CG-CCACCAGCAG GCG CTGCAGATGGACG        AGGACGCGCTGGCGA  51 324
LTC53_RS03625  851324 ..  851335 -  -2.2  -2.64472   GAGGGCTGAAAGGCA                GTGC ATGG ACAC                 GACGGACTCCGATGG  38 67
LTC53_RS03620  850781 ..  850828 -  -6.2  -4.07568   TTTGTCGCGGTAAAA CCGTTCCTACAGGAAGCATGGCG AGC CGGC-TGCGTGCTGTAGGAGGGG CTTCAGCCCCGACCT  66 125
LTC53_RS03605 NONE
LTC53_RS03600 NONE
LTC53_RS03595  845823 ..  845846 -  -3.7  -3.34013   CATGGGGGCAATGAA          GGCGTCCCC GGGGCG GGGGACGGG           GTTCATCCGCTCGTG  47 47
        lptD NONE
LTC53_RS03585 NONE
        pdxA  841063 ..  841077 -    -7  -2.87211   AGCCGCTCCTACAGA               TGCGCG CGG CGCGCG               GCCAATTGCGCGCAT  50 4
        rsmA  839973 ..  840010 - -13.6  -2.56596   CGGCGCAGGAATGGA  CTGCGCGCTGTCTACGAG CGCG CT-GCAGACAGCGCGC-G   CTGCGGCCGCTGCGC  67 167
        apaG NONE
LTC53_RS03565  838137 ..  838160 -  -5.8  -3.02144   TGATGGGGCGCAAGA          CCGCGCAGTC GCTG GGCCGCGCGC           TGCCGGGGCGCCTGA  48 478
LTC53_RS03520  831322 ..  831335 -  -9.5  -3.54424   CTGGATTGCCTGAAA               CGCCG ACGT CGGCG                CTGGCGCGCGCTCAG  64 37
LTC53_RS03500 NONE
LTC53_RS03495 NONE
LTC53_RS03490  824201 ..  824228 -  -4.1   -3.4252   GCGCAGCGACTACAA        CGCGCTGGCGGT GATCA ACCGGCA-CACG        CTGACCCCGGCCGGC  49 486
LTC53_RS03460 NONE
LTC53_RS03455  816672 ..  816701 -  -6.2  -3.35798   ACGGGGCATCGAGAA       CGCCTTGTCGGG ATCAGG CCCGTCGCGGCG        ACGGGCAGTGAGTGC  55 88
LTC53_RS03450  815796 ..  815815 -  -5.7  -2.85351   CGGGTGCACAGGAGA            CG-GTCGC GGTGT GCGACACG            ACGCGCGATTGCCGA  46 270
LTC53_RS03445 NONE
        dusB  812173 ..  812219 - -12.9  -3.15544   GCGTATCTGGACCAA GCCGGCGACGGTTGCGCCCGCCG GCG CGGCGGG-GCAGCC-CCGCTCGC ACTGAGCGGATCCGG  72 86
LTC53_RS03400 NONE
LTC53_RS03395 NONE
LTC53_RS03390  802849 ..  802868 - -13.6  -4.41494   CACGCTTAATCAAAA            GCCCCCTT TCTC AAGGGGGC             GGTATATAGAGCAGC 100 16
         rph NONE
        rdgB  796839 ..  796879 - -10.4  -3.81488   CGGCTCGAAAGAGAA CGG-TGGCACCGGCGCAGC GGCC GCTACAGCGACGCCAGCCG  CTGTTTCAGCAACGC  74 8
        hemW  795578 ..  795592 -  -3.5  -2.70932   TTGGCGGCGCAAGGA              CGTCGC AACC GCG-CG               GCCGCGTTTCAGAGC  41 34
LTC53_RS03350 NONE
LTC53_RS03345  792464 ..  792492 - -12.3  -5.63103   CCCGAAGTAAAAAAA        CGTCCTGGCGGAC AGC ATCCGCCGGGGCG        TTTTGCGTTGTTGCA 100 208
LTC53_RS03330  789510 ..  789540 - -11.9  -2.77899   TGTCGGCATGAAGGA      TGCCGGGCTG-TCG AACC CTATCAGCCCGGCA       GTGGTGCCAAATTGG  62 126
LTC53_RS03315  785464 ..  785512 - -10.2  -3.01924   CAGCGCGCTGCAACA GCACCTGCGCACGCAGGCCGCGCG CGC CA-GCGGCCAGC-TGCGCATCCGC GCCCATGTGCACGGC  59 314
LTC53_RS03305  783738 ..  783762 - -17.1  -3.36823   CGCGCGAAAACCGAA          CGCGCCATCGC CCA GCGGTGGCGCG          TTTTTCGTTGGGCGT  87 284
LTC53_RS03280  777660 ..  777682 - -11.2  -2.73364   GCTCGATGCCAAGCA           GGCCGGCATC GAC GACGCCGGCA           AGATCGACCGCGTGT  59 266
LTC53_RS03270  776195 ..  776211 -  -3.6   -3.3854   AATCATGACGCATAA              CCCGGA TGGGT TGCGGG              CGATGCTGGAGAATG  49 142
LTC53_RS03210  760826 ..  760841 -  -6.1  -5.08824   GGTCCAGCCAAAAAA              CCGCA TGTTTG TGCGG               TTTCGTTATGCAGTT  86 100
LTC53_RS03175  752069 ..  752093 -  -9.9  -3.28712   GGTGCTGCGCGACAA          CACGCTGCAGC TCG GCGGCAGCCTG          ATCAACGTGCCCAAA  63 400
LTC53_RS03165  749004 ..  749027 -  -6.6  -2.55015   ACCCGACCCAACGCA          GGCATCGCTA CAGA TAGCGCAGCC           AGGCCAGGTCGCGGC  46 9
LTC53_RS03160  747418 ..  747457 - -13.1  -3.05384   CCCGTCGCGACTGAA GCCGCTCCTACAAAAGTTC CATG GAACC--TGTAGGAGCGGC  TTCAGCCGCGACCGG  70 110
LTC53_RS03115  738000 ..  738023 -  -3.1  -3.53012   CGCGCTTCGCTCAAA          CAAGGGCGCC TCTTC GGC-CGCTTG          CGCCTGCGGTGCTCG  49 176
LTC53_RS03110 NONE
LTC53_RS03105  736516 ..  736528 -  -6.2  -3.61398   CGGCGCGGCCAACAA                CGCG CAGGC CGCG                CACGCACAGGCGCTG  57 239
LTC53_RS03090  733372 ..  733394 -  -4.1  -2.52464   CTGTTCGGGAAGCGA          CGA-CACGCC TCAG GGCTTGCTCG           GCACTTCGAAACCGA  40 12
LTC53_RS03085  732336 ..  732358 -  -7.6  -2.58861   CACTACCGCGACAAC           TGGTACCTGG ACG CCTGGGACCA           CGGTCGCGATGCGGT  48 519
LTC53_RS03075  730726 ..  730737 -  -7.2  -4.37092   AGCCGCCCTACAAAA                GCCG TGGT CGGC                 TGCAATGCCGCGTCG  75 84
LTC53_RS03045  722752 ..  722771 -  -3.5  -3.32572   ACGGAACGATAAAAG            CAACGTG AAGTGG CGCGTTG             TCTACATTGCGCCCT  47 476
        glgA NONE
LTC53_RS03030  718663 ..  718713 -  -3.6  -2.64981   ACAGCGCGAAAGCGA CTTCGCCGTTGGCGGTGGGCCAGG CGC CGTGGCGCAGCGCTGCGGGCGACG CGGTTGCCGCGCCGT  40 73
        treZ  716841 ..  716858 -  -2.6  -4.87318   GGCAAAAGGGAAAAA             GGGACG CTCAGC CGTCGC              CGCGCGCGCGGCGTG  76 130
        malQ NONE
        treY  712210 ..  712228 - -11.7  -3.05384   GGTCTTGTCAGGGAA             GGTGGCC TGCAC GGCCACC             GGCATGTCAGGGAAC  65 32
LTC53_RS03010 NONE
        glgX  709533 ..  709545 -  -4.7  -3.07935   AGTGCACGCATGCAA                GGTGC CGC GCTCC                TGTGTAGGAGCGGCT  45 302
LTC53_RS02965  697625 ..  697655 -    -8  -3.61517   AGCGTGGCCGAAGAA       CGCGAGGCCGCGCC GAA GGTGCGGGCGGGCG       AGCTGGCGGTGTGCA  60 153
LTC53_RS02955  696730 ..  696747 -  -2.6  -2.73875   GTTTCCGGAAGATTA             GGCGAG GAGGCG CTCGGC              GAGGATCGCCAGCTC  38 5
LTC53_RS02950 NONE
LTC53_RS02945 NONE
LTC53_RS02940 NONE
LTC53_RS02935  689534 ..  689545 -  -2.2  -3.05384   GCTCGCCGTAGCGAA                CCTGC ATG GC-GG                TTGCAGCCGGCAGAT  41 41
LTC53_RS02930 NONE
        fabR NONE
LTC53_RS02875 NONE
LTC53_RS02870 NONE
LTC53_RS02865  671880 ..  671910 -  -3.8  -3.05066   AAGAATCGGCCAAGA       TCGCGTCGTCGC CGTGTGT GCGGCGGCGGGA       GCGCGTGTCGCCGCG  44 46
LTC53_RS02860  670571 ..  670583 -  -4.1  -3.14132   GCTTCGGGTCATGAA                CATTG CTC CAACG                TGTAGGTCGATGACG  45 392
LTC53_RS02855 NONE
LTC53_RS02850  669463 ..  669489 - -19.4  -3.14848   GTCTGGGATTAAAAG         CCGCGGCGCCGA CGA TCGGCCCCGCGG         TCGTGCGGTCAGGCC 100 34
LTC53_RS02845  668343 ..  668397 - -23.8  -2.63596   TCGGATGTTATAGGA GCGACTTCAGTCGCGACCGGGCGCT GTCGAA AGTGCCT-GTCGCGACTGAAGTCGC TCCTACAAATGCGCA 100 98
LTC53_RS02835  666227 ..  666260 -  -9.4   -3.4252   GGCCACGCAGCAGAA     CGCGGCCTTGGTGG AGGAAG CCACCGCGGCGGCG      AAGAGCATGGAAGAC  61 374
LTC53_RS02810  661961 ..  661998 -  -9.9  -3.61654   CAGATCTACCTGAAA   CGCAGCACGGCCGACTTC ATC GAAGT-GTCGGTGCTGCA   TCGGCCGTGACCGCA  67 91
LTC53_RS02790  660340 ..  660353 -  -6.7  -4.03234   CTCCCTCGATATAAA               TGACC ACTG GGTCA                TTTATTGCGCGCCGA  67 78
LTC53_RS02785 NONE
LTC53_RS02780 NONE
LTC53_RS02775  656977 ..  656994 -  -4.8  -2.68279   CAGGGACGAAACGTA             GGCGAT CCGTAC ACCGCC              ACCTGCGGATGCACA  43 108
LTC53_RS02715 NONE
LTC53_RS02710  637577 ..  637623 - -18.1  -3.22475   GGGAGGGGGAGAACA GC-CGAGCGCAGACACGGCGGCA GCG CGCCGCCGTGCCTGT-CTCGTGC ATCAATGCATCGCGC  89 27
LTC53_RS02705  636012 ..  636022 -  -6.8  -3.05384   CGTTCTCGCACTCAA                 GCTC CTT GAGC                 CGCTTGGCATCGGGG  51 256
LTC53_RS02670  627731 ..  627755 -  -7.2  -3.05384   CTGGCCGGCATTCAA          GTACAGCG CCGAGCATT CGCTGTAC          GTGCACCGCGACCAT  52 299
        ribA  625898 ..  625920 -  -3.2  -2.52464   GGGCTCTCGAAGCGA           TGGGCGGGCA CTG TGCACGCGCG           CCGTGCAGGTCTGCG  39 166
LTC53_RS02655 NONE
LTC53_RS02650  623512 ..  623522 -  -8.2  -3.63515   GGTGACGTTCAAGAA                 CCGG CGC CCGG                 GATCGCAGCTGATCG  63 329
LTC53_RS02605  613425 ..  613455 - -16.9  -3.55563   AGGCTAGGCCGCAAA      CG-CAGACGGCGCC CTCG GGCGCCGCCTGTCG       CGGAGGTAGGACTTG  89 55
        dprA NONE
LTC53_RS02595  611565 ..  611579 -  -4.9  -3.28712   TGTCGCGCTCGAGAA               GCCCG TCGCG CAGGC               GTTCCAACAAGGTCG  49 141
LTC53_RS02585 NONE
LTC53_RS02580 NONE
LTC53_RS02575  606987 ..  606999 - -10.5  -3.77588   ATTCGACATTAACAA                GCGCG ACG CGCGC                TGTCCTGCCGGTTCC  74 266
LTC53_RS02570  606290 ..  606311 -  -2.8  -3.64703   CGCCGGCCAGGGAAA           GCCGGGCC GGACGG GGATCGGC            AACGCGCTCAGGCGC  53 33
LTC53_RS02565 NONE
LTC53_RS02560  604638 ..  604648 -  -2.4  -3.15544   GGCGAGCCGGAGGAA                 GTGG CGG CCGC                 GGTCGGTTTCCTGTG  43 269
LTC53_RS02550  603651 ..  603668 - -14.1   -3.4285   GCAGGCAACGCACAA             CGCCGGC CGAT GCCGGCG              TTTTTATTTTCCGGT  77 29
LTC53_RS02530  595594 ..  595646 - -10.9  -3.65351   CCAGGTGGACGCAAA GGCGAGGCGCAAGCGGCTGTCGCGA CGC TGGCGCCGGCCGCGGACGCCGCCCC CACGCGGTGCAGCGC  73 388
LTC53_RS02520  593826 ..  593844 -  -7.3  -4.88407   TCAGCGAAGCAAAAA             GGCCCGG GTTTT CCTGGCC             TTTTTCGCTGGGCCG  86 444
        trxA  587009 ..  587035 - -19.4  -2.78384   CCGGCCGGTACGACA         GCGGCCGCTCCG CTC CGGAGCGGCCGG         CGACAGACTCAGGCC  93 34
         rho  584953 ..  584984 - -19.6  -3.54424   CGGCAGCGCCGCAAA      CGAAAAACGCCCCGC GAT GCGGGGCGTTTT-CG      TGTTCGGCCAGCGCT 100 45
LTC53_RS02460 NONE
LTC53_RS02455  577869 ..  577899 -  -8.8  -3.01712   GCGTGCTGGCCAAGA       CCCTGGACCAGGCC AAC GGCCAGTTCCTGGA       CAACGACAAATCGCC  55 420
LTC53_RS02445 NONE
       cas5c NONE
       cas8c NONE
       cas7c NONE
        cas4 NONE
       cas1c NONE
        cas2  567396 ..  567413 -  -5.5  -5.00616   GGGTGTTGGAAAAAA             GTCCGCA CTTT TGCGGAA              CCCTTCGGAGACGCA  85 161
LTC53_RS02390  557876 ..  557886 -  -2.4  -4.11371   GAAGATCGTCGAAAA                 GCCC ACA GGGG                 TGTCCTTGCTCGAAA  58 171
LTC53_RS02385  554579 ..  554592 -  -3.7  -3.53012   TCGCCTTGCGGCAAA               GCCCG TCGG CGCGC                TTCAGCACCAGCCGC  51 93
LTC53_RS02380  551265 ..  551297 -  -6.2  -2.62184   GTCGCCGCCAGATCA     GGCCGGCAGCGGCGTG GAT CAC-CCGC-GCCGCTC     AGCGGGTCGCCAGCG  46 24
LTC53_RS02375  548081 ..  548116 - -18.2  -3.05596   TATGTGTTGACCGAA    GCCGGCC-GCGCGGCGG GCG CGGCAGCGCTGGCCGGC    AAGCCTGCCGAGGCG  82 468
LTC53_RS02310 NONE
LTC53_RS02305  532425 ..  532442 -  -2.7  -2.73771   GGACAGCGGCGAAAG             TGCCATGG CCG CCA-GACA             GCTGCGGCGGAGGCT  40 393
LTC53_RS02295  530669 ..  530687 -  -2.2  -2.87132   GGGGCGCTGTAGACA             CGGCGTCG TTT CATCGCGG             ACTCCATCGCTGAGG  40 108
LTC53_RS02290  530156 ..  530200 -  -5.8  -3.02144   CTAGCGGCGCGAAGA CGGTGCCGCCTGCAACG-CGC AGGACA GCGTCATTGC-G-CGGCAGCG GCGTACTCGTACGGC  47 10
LTC53_RS02280  528987 ..  529027 - -10.4   -4.7254   AGCCGCGACCAAAAA CGCTCCGCATGAGGCGCTC GCCG AAACGCC-CAAGCGCAGCG  TGAATCGCGCGCGGC 100 132
        rpsU  520531 ..  520555 - -13.6   -4.9725   ACGGCCACACAAAAA         GCCGGCGACGC TTGC GCGT-GCCGGC          TTCGTTGGCCTACCG 100 88
LTC53_RS02240  519864 ..  519880 - -13.7  -3.53091   AGCCGGCGGTCGAAA              GGCGGGT GAA ACCCGCC              GTCGGATCAGCCGGC  78 32
LTC53_RS02235  518751 ..  518808 -  -8.4  -3.14344   CAGGTCGTCGATGAA CGCGTCGGGGATGCGGGC-CATGGGCGAT AGG AT-G-CCACGCGCCCGCGCCGCCGCCACG GGTCGGGGCGCAAAC  56 56
        dnaG  516858 ..  516891 -  -5.9  -3.89346   GCGGTAGTGCACAAA     GCGGT-TGCGCCACGC ATT GCCCAGCGTAGACCGC     GCTCGGTGGCGCGGG  62 166
LTC53_RS02225  515574 ..  515597 -  -2.4  -2.80035   GACAGAGGAAGATGA          GGCGCGCAC CAATCCC ATG-GCGCC          ATTGCTTACTGTACA  38 179
LTC53_RS02220  513896 ..  513928 -  -5.3  -3.14881   GAACCTGCGCAGCAA      CGCCGCTGCGCGCTG CTG CAGAGTGCTGCTGCA      AATTGGAGGCCGTCC  49 57
LTC53_RS02195 NONE
LTC53_RS02190  509332 ..  509351 -   -10  -3.30124   TTTCAGCCGCGACAA            CCACTTCG CCTT CGAAGCGG             CGGCGTGGTACTGGC  63 182
        putA  501143 ..  501198 -   -25  -2.62263   AGTTTTTCTATAGGA GCGGCTTCAGCCGCGACATTGC-CTC ACCGGA GAGTGCC-TGTCGCGGCTGAAGCCGC TCCTACAGAAGTGCC 100 53
LTC53_RS02130  490290 ..  490307 -  -8.3  -2.78596   CATGCGCGGAGTATA             GGGCGCG GCGG CGCGCCG              GCTCAGAAGCCCTTG  52 28
LTC53_RS02125  489692 ..  489721 -  -7.7  -3.76839   CAAGGCGAAGCCAAA       GGCGGCCTTGCCG ACCG CAGCGAAGCCGGC        GCCGCTCGCGCCCAA  64 261
LTC53_RS02110  486117 ..  486156 -    -5  -3.12999   CGATTCTATAGGCAA GTCCCACG-CGCGCGC CGCCGGCATT GCGCACGACGCGGG-C  GGATCAATTCTCCGG  47 29
LTC53_RS02105  484288 ..  484315 - -21.4  -3.55622   CGCAACCGGTTGAAA        CGACAACGGCGC CGCA GCGCCGTTGTCG         CGACTGTCGCGCAGC 100 55
LTC53_RS02065 NONE
LTC53_RS02060  471854 ..  471872 -  -7.3  -3.62597   CGGATCCGCGAACAA             TCGGCGC CCGCC GCGCCGC             AGGCGGATTGAAAGC  61 376
        pyrE NONE
LTC53_RS02035  468072 ..  468110 -  -9.7  -3.53012   TCGTCGCGGTTGAAA  CCGCTCCTACAG-G-AAGC GCG GCCTGCACTGTAGGAGGGG  CTTCAGCCCCGACAG  64 202
        radC NONE
        argS NONE
LTC53_RS02005  460237 ..  460260 - -12.4  -3.93288   GGCGAGGCAATGAAA          CGACTGGCCT ACGC AGGCCGGTCG           TAGGGAATGCGGGAG  82 87
LTC53_RS01980  456967 ..  456994 -  -8.4  -3.05384   CGGTTCTCCACGCAA        CGGCTTTACGCCG GAT CGGCGT-AGGCCA        CGCGCGCTTCGTGCA  55 3
        speE  446463 ..  446473 -  -8.2  -3.10464   CGACGAAGGCGAACA                 CCGC GGC GCGG                 CGGCTTGCCTGCCGC  56 131
LTC53_RS01930 NONE
LTC53_RS01925  441567 ..  441587 -  -6.8  -2.83715   TCGACGATCAGGAGA            TGCTGTGG AGCGG CCACCGCA            CCTACTGGGAAGGAT  47 291
LTC53_RS01905  437851 ..  437863 -  -4.7  -3.53012   CCTTCTGCGTTGAAA                GGTCG GCG CGTCC                TGCGTGTCTCTTCGT  52 401
LTC53_RS01900  436057 ..  436072 -  -3.2  -3.05384   GTGCGCCCTATCCAA              GCCTAC TCAT ACAGGC               TGCAGCATCAGCCAA  42 2
LTC53_RS01895 NONE
LTC53_RS01890 NONE
LTC53_RS01885  430574 ..  430604 -  -3.3  -3.54424   TCCCACGCCTGCAAA      GGCGCTTAACGTGG TAAT CCAAGTCAAA-GCC       CTGAGCCCCTCTGTT  51 313
LTC53_RS01845  416359 ..  416388 -  -4.9  -4.12738   GGAGATGAAAGCAAA       GACCCTGGCGATGG TCG CCGTCGC-AGGAGC       GGTCCTGTGCTTCCA  66 385
LTC53_RS20015  409392 ..  409425 -   -24  -3.89346   TGTTGACGGCACAAA     CGCACAAGGCCCGG ACGATG CCGGGCCTTGTGCG      AGGTACCAGGGTGGG 100 48
LTC53_RS01815  407964 ..  407994 -    -6  -2.57795   GTGACCACGAAGTGA       TCCAGCAGCCGG ATATCCA CCAGCAGCAGGA       CGTTCTTCAACCGGG  46 437
LTC53_RS01800  406648 ..  406663 -  -3.2  -2.70932   CTTTTTGGTCAAGCA              GATTCC TGCA GGTATC               GGGTGACGGCCTCGA  40 3
LTC53_RS01795 NONE
LTC53_RS01790 NONE
LTC53_RS01785  405411 ..  405468 -    -7   -4.2787   GTAGCAAAAAAAAAT GCAGTTCCGGAGTGCCAGGTGGAGGAAGC GAA GCTCCC-CCACCTGG-ACACCAAGGC-GC ATCAGGGGGACGGCT  72 27
LTC53_RS01765  400627 ..  400644 -  -3.3  -3.85817   ACCGTCTGGCAGAAA             CAGCGCG TCTC CACGGTG              CGGAAGGAGCGCGAT  56 65
        ubiA  396697 ..  396720 -  -9.6  -3.15861   CAGGATGTGCAGGAA          CAGCAGCG GGTGTTTG CGCTGCTG           ACGCATGCGCCGACG  60 289
        bioB NONE
        bioF  392784 ..  392808 -  -4.1  -4.14392   GCCGAATGGGGAAAA          GGGAACAGGGC AAC GCCGCGCTCCG          CTCACATCGGCCCGC  61 41
        bioH  391970 ..  392010 -  -4.6  -4.15201   TCCTACAAAAAAAAG CGCAAGCCCATCCGCAACG CGCG CGCTACGCA-AGGCCAGCG  ATGAACCCGCGCAAC  62 10
LTC53_RS01715  390964 ..  391002 -  -9.4  -2.72344   GCCGATCGCGAACGA   TCGAGTCCCGAGTCCCGA GTC CCGAGTCCCGAGTCCCGA   GTCGCGGCCCTCAGA  55 36
        bioC  389672 ..  389698 -   -10  -3.20858   CATCATACCGACGAA         GGCCTGCCGCCG GCG CGCGGGCAGACC         TACGTGCTGCCGGGC  60 291
LTC53_RS01690  386851 ..  386868 - -14.1  -4.19238   GCCCGAACGCGAAAA             GCCCCGG CGAG CCGGGGC              TTTTCGTTTTTAGGC  91 199
        mnmG  384279 ..  384291 -  -4.8  -4.07618   TCTTCAATAACGAAA                GTCC TGCGT GGAC                AAGGTGACGAAGAAG  62 385
LTC53_RS01680  382721 ..  382731 -  -8.2  -3.28712   GGGCCTTCTCGATAA                 CGCG CGT CGCG                 ACTGAAGACGCTCCC  58 86
LTC53_RS01655  375128 ..  375146 - -12.4  -2.78384   CGGCTGTCGATGATA             GCGCCTGG CTG CCAAGCGC             TTCGGGCGCATGCCT  65 248
LTC53_RS01650  374371 ..  374395 -  -4.2  -2.78816   CCAGCGCCGACGAGA          CGCGGTTC TTCTTCACC GTACCGCG          CGCCCGTCAGCGGTA  40 145
LTC53_RS01630 NONE
LTC53_RS01625 NONE
LTC53_RS01620 NONE
LTC53_RS01615 NONE
LTC53_RS01610 NONE
LTC53_RS01605  365587 ..  365602 -  -3.9  -3.04144   TCCGGACCCGGAACA              GCACG GCGCTG CGCGC               AACGGAAGTGACGCA  44 127
LTC53_RS01600  364204 ..  364228 - -11.4  -2.54193   GATGACTGGAACCGA         GGCCCGC-GCG CGGG CGCTGCGGACC          GAAACAGACGCGGCT  61 39
        ilvD  359862 ..  359901 -  -8.5  -3.72695   ACGTGTCGGAGGAAA  CGCTGCAGCGCGCGGTGC AGGCG GCACGGCGCCGTGCAG-G  CATCGTCAAGCCGGC  65 375
LTC53_RS01575  359045 ..  359061 -  -4.4  -3.53224   CAGTCGTTCCTGAAA             GCGCACC GGAT GGTGC-C              GAGCATGAGCCGACG  49 210
LTC53_RS01565  357351 ..  357374 -  -7.4   -3.3482   TAACGGCTGAATTAA          GCC-GACCCAC GAA GCGGATCCGGC          TTGAATGAATTGTTA  56 64
LTC53_RS01560  356897 ..  356920 -  -6.6   -3.0792   TAACACCTGAGTTAA          GCCG-CGCCAC GAA GCGGCTTCGGC          TTGAATGAATTGTTA  49 38
LTC53_RS01555  356197 ..  356208 -  -5.8    -3.794   GTTCAAGTGACGAAA                CGTG GCAT CACG                 ATCGTTGCCGAAGAG  60 154
LTC53_RS01545  353717 ..  353730 -  -8.1  -4.41206   AAGCACCTGATAAAA               CGCCA AATA TGGCG                ACGAACTCTCCCAGT  77 497
LTC53_RS01540  353090 ..  353115 -  -5.3  -2.56046   GTAAACGGTAATCCA         GCAGGATCGGA AGTC CCCGACCTCGC          GAGGCTCCAACCCGC  44 305
LTC53_RS01535  351443 ..  351463 -  -3.2   -3.4072   GACGCGCCAGCAGAA            GCTCGCCA CGGCT TGGCGAAT            CAGCTGTCTGTCATA  48 141
LTC53_RS01530  350515 ..  350546 -  -9.4  -3.10012   AACTCGATCATGCAA      GCTGCGA-ACAGCAG GCC CTGCTGCGCCGCCGC      CATTGATCAACGATC  59 432
LTC53_RS01525 NONE
LTC53_RS01520 NONE
LTC53_RS01515 NONE
LTC53_RS01510 NONE
LTC53_RS01505  345601 ..  345619 -  -4.5  -3.09004   GTAGCGCGAAAAGCA             CGTTGCT TGCCG AGCATCG             CCGCTCACTGTTCAT  47 72
LTC53_RS01500  344302 ..  344314 -  -4.7  -3.55444   GGTCGATGTGGGAAA                GGCCG CCG CCGCC                GCGATCCGGGTCCGC  52 141
LTC53_RS01495  343603 ..  343616 -  -9.5  -3.53012   TTGCCCGCCCCCAAA               CCGGC CAAG GCCGG                CAAACGCGCAAGCCG  65 96
LTC53_RS01485  340589 ..  340617 -  -6.7  -2.87243   CGATTACCAGAACGA        CGGCATCCACA TGAACAG CGTGGACACCG        GTTGGGTCACCGACG  50 333
LTC53_RS01465  335938 ..  335951 -  -3.1  -2.65264   CGACCAGCTAGATCA               CGCTGC GTT GCAG-G               AAGCGTCCGGCGATG  39 4
LTC53_RS01460  335565 ..  335604 -  -9.2  -3.14132   GCGCTTGCTGACCAA  GCGCTACGGCAAGCGCATC ATC GATGCGC-TGCCGCCGTTC  AAGCGGGTGATCGGC  59 66
LTC53_RS01440  331083 ..  331132 -  -8.7  -3.05384   CTTGTCGCGACTGAA GTCGCTCCTACAAAAA-AGCCG CGCGCAT CTGCTGCCTTTGTAGGAGCGGC TTCAGCCGCGACCAA  55 134
LTC53_RS01430  327367 ..  327402 -  -8.9  -2.52464   CGCTGGCGGAAGCGA    TGACCGCGCACGTGG GCTGAG CCATGCACGCGGTCG     CCTTCGGCGTGGTGC  51 155
LTC53_RS01420  325187 ..  325234 - -21.4  -3.21099   TTGTTGTAGGAGCAA CTTCAGCCGCGACCGAGTCCTA CCAG TAACGCCCGGTCGCGGCTGAAG CCGCTCCTACAACGG 100 198
LTC53_RS01405  322542 ..  322559 -  -9.1  -3.61774   GACAATACGGCGAAA             CCGGCTC CCAC GAGCCAG              AGATGGGATCCACCG  64 505
LTC53_RS01375  314949 ..  314966 -  -4.1  -4.07568   GCGGCCGCCGCAAAA             GCGTG AGCGCGTG CACGC              GAGGTCAGTGCGCCG  61 30
LTC53_RS01370  313753 ..  313780 -  -2.5  -5.41143   GAGTCCCGAAAAAAA        CCCCCCGGCAC ATGCCG GTGCCGGGCTT         TTTGCAGGATCAGCC  90 35
LTC53_RS01335 NONE
LTC53_RS01330  306166 ..  306197 - -14.4  -2.83715   CCGAGGATCAGGATA      CGCATGCGCCGATG GTAG CAGCGGCGCATGCC       TGGTTCAGTGTGATG  71 155
        panE  305110 ..  305120 -  -3.2  -4.07568   GCCGTTGCCGCAAAA                 TGCA TTG CGCA                 TCGTCCATCGCGGCG  59 131
LTC53_RS01320  304189 ..  304228 - -14.3  -3.21218   ATCTTGTAGGAGCAA  CAGCCGCGACCGGCATT ACCGGG AACCCCTGTCGCGGCTG   AAGCCGCTCCTACAG  73 80
        hrpB  300457 ..  300471 -  -3.5  -3.72324   TACTGGCAGGAATAA               GAGAC GCAGT GTCCC               CTGGACACCGTATAG  54 99
LTC53_RS01305  299949 ..  299977 - -22.5  -5.28176   CGCACGCACAAAAAA        CAGCGGCCGGAAC GTT GTCCCGGCCGCTG        TTTTTTGGGGCATCG 100 77
LTC53_RS01290 NONE
LTC53_RS01285  295849 ..  295882 - -18.9  -2.87132   GCCGGGCTGCAGACA     CGGGCGCTGCGTGAT CGCG ACCACGCAGCGCCGG      TTCGCCAATCCCGAC  89 55
LTC53_RS01270  293737 ..  293748 -  -2.2  -2.63596   CTGCATGGGATAGGA                CTCC TCTC GAAG                 CTACCCCCTGTCGCT  38 39
LTC53_RS01265  293256 ..  293282 -    -8  -3.34013   CAGGGTTCCAAGGAA         TTCCATGGCC AGATCGA GGCCAAGGAA         CGCACCTCCGAGGCC  55 153
LTC53_RS01245  288358 ..  288392 -  -4.9  -3.36273   GCGCGGGAACACGAA    CGCCATTCGCTGACCT GCAC ACGGCAGCGCA-GGCG     GTGTCGCCAGCGCTG  51 53
LTC53_RS01240 NONE
LTC53_RS01235  286704 ..  286749 -  -4.6  -2.78816   GCATTTCCCATCAGA GCCAGCGAGCATGGCCGCCGCA CTGG TGCTGCGCCCCTGCA-GCTG-C GGTTCCGTCCGCGGT  43 57
LTC53_RS01225  284852 ..  284880 - -22.5  -3.03124   TTGGATCGGCGAACA        CCGAGGCCTCGCC TAT GGCGAAGCCTCGG        TATCGCAGTCGCTGC 100 177
LTC53_RS01200 NONE
LTC53_RS01195  274309 ..  274339 -  -3.3  -2.52543   AGCGTTGGCAAGGCA      GTGATCGGATCGACC GGC GG-CGATGCG-CCAC      TGTGCTGCAGCGCGC  39 104
LTC53_RS01190  273529 ..  273583 -  -5.9  -3.53012   CGGGCTCCGTGGAAA GGGC-GGCCAGTATCCATCGCCACGCCG GCGC CGGCGTGGCGA-A-A-AC-GGCCAGCTC AGCGTGCGTGTTGCC  56 24
LTC53_RS01185  273048 ..  273082 -  -4.9  -3.04461   GACCGACCCGCAAGA    CGCCCGCCTGCACCGCG CCG CGCGCTG--GGCGCGCA    AGGAACTGCTGCCGC  45 104
LTC53_RS01165  268575 ..  268586 -  -7.2  -3.53012   TCGTCGCGGTTGAAA                CCGC TCCT GCGG                 AGAACCGGGCGGGCT  58 39
LTC53_RS01155  266636 ..  266669 -    -3  -2.90496   GGCTGCCGGAAATCA     TGACCCACGCGCCGG ACATG CCG-CGCCTGGTGCA     CAGCTGGCTGCGCCA  40 351
        ddlA  263324 ..  263337 -  -3.7  -3.23393   CCGCAGCGGAGAATA               TCCGC TGCG GCGGG                CCGTTCGTTTGTGTG  47 84
LTC53_RS01125  260651 ..  260694 -  -9.5  -2.75064   GCTGGCACGCAACCA GGCCGACATCGCCGC-CCAGC GCGC GCAGGTGCGCCAA-GCCGGCC TGCTGCCGCAGGAAA  56 50
LTC53_RS01110  256801 ..  256819 -  -4.5  -4.17762   CACCCTGGAAAAGAA             CACCGTA ACCAA TCCGGTG             CCGACCAGTTGGAAG  66 118
LTC53_RS01075 NONE
LTC53_RS01070  247914 ..  247927 -  -5.2  -3.79162   CCTATAGAAAAGTAA               GGCG TGCACG CGCC                GATGGCCTCGGGGTG  60 113
LTC53_RS01065  247012 ..  247037 - -19.1  -5.60993   TGGCGCACAAAAAAA         GAAGCCCGGTC CTGG GACCGGGCTTC          GAACCGCGCGCAGCG 100 80
LTC53_RS01035 NONE
LTC53_RS01030 NONE
LTC53_RS01025  240607 ..  240632 - -10.3  -3.78775   CCTTGCACGAGGAAA         CCGGCGCCAGC TGCA GCCGAGGCCGG          TCGCGGTCAACGGCG  74 64
LTC53_RS01010  237062 ..  237099 - -20.6  -3.06183   TGTACGCCGATGCAA   GCG-CGCCGCCGGTGGC TTCGG GCCACCGGCGGCGACGG   GTTCTGACGTCGGCA 100 409
LTC53_RS00970  227965 ..  227989 - -11.4  -3.54459   CTAAGCTCGCCTAAA          GCCCCTCTCC AGTCG GGAGAGGGGT          TGGGGTGAGTGTCCC  72 162
LTC53_RS00955  223565 ..  223591 - -11.5  -2.61264   GGCTTCATCGAGAAC         GCGCGCGGCGA CGGGT TCGCCGAACGC         TGGGTGGCCGAGCGC  59 231
LTC53_RS00905  211098 ..  211128 -  -6.8  -3.39895   CGCGCCACCAAGCAA       GCGCTGCCCCAT GGCGGAG ACGGCGCAGCAC       ATCGCAACAGCGCGA  56 59
LTC53_RS00880  206437 ..  206447 -  -6.8  -3.16668   GAATACCCGCATGAA                 GCTG CTG CAGC                 AGTACGACGGGTTAT  52 130
LTC53_RS00865 NONE
LTC53_RS00860  202333 ..  202378 -  -5.3  -2.52464   TGGGCGGGTAACGCA CTGCGTGCGATCCGGTGC-CG ACGCTA CGCGCACCGGTACGCTCAC-G CCGTGATGCCGGCCC  44 408
LTC53_RS00855  201692 ..  201715 -  -6.6  -3.31144   CTGCGATGCGCAGAA          CGCGGATTGC GCGG GCAAGCCGTG           AGCGTGTCCCGGCGG  53 209
LTC53_RS00835  197113 ..  197123 -  -4.6  -4.46926   CATTCCAGCAGAAAA                 CGCG ATG CGCA                 CCGACGTTCCAGGCT  72 275
LTC53_RS00805  187710 ..  187723 -  -9.5  -3.30635   GAAACTGGCGCAGAA               CGCGG TGAT CCGCG                AGGTGGCCGATGCGC  63 433
LTC53_RS00795  186089 ..  186105 -  -7.9  -4.07568   GTCTGCCTCTGAAAA              GCGATCC GAA GGAACGC              GGCGACACTCGCCCC  69 199
        gltB  181620 ..  181631 -  -3.6   -3.2827   GGAGGCAATCATCAA                GCAG CGCG CCGC                 AACGACTCGGTCAGC  47 10
LTC53_RS00785  179935 ..  179970 -  -6.9  -3.55622   GTCAATCCGCGCAAA   CCTT-C-TGCCCGGCCG CGCG CAGCCGGGCATGCAACG    ACGTCGCTTAGGTGC  58 53
LTC53_RS00780 NONE
LTC53_RS00775  176792 ..  176824 -  -9.1  -2.87211   AGCTGCGTCGACAGA     CGCT-GCGGCGCGC CATGGT GCGCGCCACGATCG      GCGGCGCGCGTGCAG  56 52
LTC53_RS00770  175484 ..  175508 -  -3.4  -2.98758   AGAGAAGGAACGACA          GTCTGCGCCG GATCG CGGTACGGAC          TCAATCGCCGGCTAT  42 109
LTC53_RS00765  174486 ..  174521 - -17.7  -3.53012   TGGCTTCGCGCCAAA    GTTGCGACGCGCATT CCCTGT AATGCGCGTCGCGAC     TGACGTCGCTCCCAC  90 80
LTC53_RS00760  172464 ..  172486 - -15.6  -3.59979   GGGCTTTACCCCAAA           TCCCCGTCCC ACA AGGACGGGGA           TTTTTTATTGCGCGC  83 491
LTC53_RS00695  157058 ..  157069 -  -7.2  -2.71144   CATCGCCTGGAATTA                CGCG TGGC CGCG                 TATCCGTGCCGCACT  49 93
LTC53_RS00655  146255 ..  146274 -  -4.8  -4.19238   TGCGCAATTGCAAAA            GGCGCGTG ATGG CGCGTGCC             GCACGGCATGTCCAT  66 188
LTC53_RS00650  145306 ..  145318 - -10.5  -3.90744   CGGGTCGCGAAATAA                CGCCG GAT CGGCG                GTTTGCCACAATCAA  77 388
LTC53_RS00645  143556 ..  143576 -  -3.2  -2.87683   ACAGGTCGCGACACA           GCGGCG-GT AACG ACACGCTGC            TGCTGGCCATCCTTC  41 217
LTC53_RS00635  141981 ..  142017 - -15.8  -3.28924   GAGCCTGCCGTAGAA   CGCCG-CCGTCGCCTCG GCGT CGAGGCGGCGGTCGGGG    CACAGCACCAGGCCG  80 93
LTC53_RS00605 NONE
LTC53_RS00600  137090 ..  137100 -  -6.8  -3.67498   CAACGGCGAAGAGAA                 CCCA CTG TGGG                 GCGGGAGCGGATTCT  61 175
LTC53_RS00595  136515 ..  136526 -  -7.2  -3.72576   CCCGTCGCGACGAAA                GCGC GAGC GCGC                 CAAGGGTTCCCGAAC  61 121
LTC53_RS00590  135761 ..  135778 -  -4.7  -3.31144   GCGTCACCTGGACAA             CCCGCCG CAGT CGGCCGA              GGCATTGGCGCAGTT  49 322
LTC53_RS00560 NONE
LTC53_RS00555 NONE
        mlaD NONE
LTC53_RS00545 NONE
LTC53_RS00540 NONE
LTC53_RS00535  121005 ..  121020 - -11.8  -5.38047   GATTCAGACAAAAAA              CCCGGC CGAA GCCGGG               TTTTTGCGTCCCGCC 100 56
LTC53_RS00520  117965 ..  117979 -  -8.5  -3.05384   GCGGGTTGCACGCAA               CGCGG TCTTG CCGCG               CTGGCCGGCTGCAGC  55 192
LTC53_RS00515  117217 ..  117248 -  -9.3  -3.12999   CGAGGCGAGATTGAA      CAGGCGCAGCGCT TCCATC AGCGCGGCGACCG       GTGGCGGAGCGGATG  59 11
LTC53_RS00510 NONE
LTC53_RS00505 NONE
LTC53_RS00500  114706 ..  114732 -  -2.1  -2.67803   GGTGCAGCAAAGCTA        TGCCTGGCCAGC CCGA GCC-GCCGGGCG         CGCCGCCGCGGCAGC  38 62
LTC53_RS00495  113169 ..  113185 -  -2.2  -3.14211   ATGGCCGTCGAGGAA              GCGC TCGGTCATC GCGC              GGTTGTCGAGCGGGA  42 55
LTC53_RS00455  102254 ..  102272 - -17.4  -2.52464   CGCGTGCTGAACTGA             GCCGGCGC GCC GCGCCGGC             GTTCGCCGCGCGCGG  79 191
LTC53_RS00445   99830 ..   99859 -  -4.7  -2.57132   CGGCCGCGGGACAAT       CCCGCGGCCGTGG TCGT CCCCGTCCCCGTG        CCTCAGTGCGCCGGC  42 28
LTC53_RS00440   98662 ..   98696 -  -7.6  -2.78384   GGGGCGGCCAGTATA     TGGCCGGCGCTGCGGC GCG ACAGGAGCGCCGGCGT     AGCGGCGTGCGGTCT  51 296
LTC53_RS00435   97545 ..   97558 -  -2.3  -4.31692   AACCGACCATCAAAA               GGCAC AAAT GTGAC                ACTGGGTAGTGCCGT  65 234
LTC53_RS00430   96417 ..   96465 -  -2.1  -3.53012   GCTCCTTGGCGGAAA TCTGCGCCGAGTCTAGCCCGCCG CCC CGGTCGGCTTGCATCTGCCCAAA GGCATGGGCGGCGGC  48 213
LTC53_RS00425   95032 ..   95059 -  -6.2  -2.77899   GGCGGTGATCAACGA        TGCGGCGCT-CGC CGA GCGCACCGGCGCA        GTATTCGCACAGGCC  46 359
LTC53_RS00410   92227 ..   92280 -  -5.9  -3.21099   GTCCTGCATCAGCAA TGCGTCGCCGGC-ACGCAGGCGCTG GACCGG CAGCTCGGGCGCAGCCC-CGACGCA GCCAGCGCCTGCATG  51 517
LTC53_RS00395   90804 ..   90821 -  -6.3  -3.74416   AAATGAGCAAGACAA             TCCA-GCG GAG CGCCTGGA             AAGTCGCATCCGGGG  61 462
        phhA NONE
LTC53_RS00375   87668 ..   87699 -  -8.7  -3.28791   ATGCTTCTTCGACAA     CG-CGCAGGACGCGG AGAT CCGCG-CCTTCGTCG      CCGACGTGCTGGGCA  59 313
LTC53_RS00325   76695 ..   76733 -  -6.5  -3.05816   GGAGTCCGTAGGCAA  GCGCCAGCGGCCACGGGC GAAG GCCCGCGCCTGC-AGCGG   AAAGGGTCGGCTGGA  49 148
LTC53_RS00320   74678 ..   74702 - -13.5  -3.06183   GCCACGCTGATGCAA          CGCGCCGAAGC GCT GCTGCAGCGCG          CGCGCATCGGCGGCG  69 340
LTC53_RS00265 NONE
LTC53_RS00260   62827 ..   62871 -  -3.6  -5.00851   ACCAAGCAAATAAAA GGACCAGAGGAAGTATCTGTT TCAA AACCAACT-TTCCTCCGGCCC TTTTGTCCTGAAGCG  81 54
LTC53_RS00240   56794 ..   56804 -  -6.8  -3.16742   CGCAAGGCGGATTAA                 CGTG CAG CACG                 CCGCGCAACAGCAAG  50 203
LTC53_RS00225   54595 ..   54606 -  -4.4  -4.11906   AGAATGGAGAAAGAA                GTGA GATG TCAC                 AGGCAGAATTGGACA  63 432
LTC53_RS00195   43166 ..   43179 -  -5.9  -4.56597   TGCCGCGCGCAAAAA               CGCCG CCAC CAGCG                CTCCCACGGATCCCC  76 60
LTC53_RS00180 NONE
LTC53_RS00175   38616 ..   38627 -  -7.2  -3.29471   CTCTCACCAGACGAA                CGGC AGCA GCCG                 CCAGCTGTGCCTGGC  54 2
        lldD   36652 ..   36664 -  -6.2  -3.06796   CTGCACTGGATCCAA                GCGC TGACC GCGC                AACAGACGCGGTTCC  49 227
LTC53_RS00145   32012 ..   32068 - -33.9  -3.28791   ACCCCTCTTGTAGAA GCGGCTTCAGCCGCGACAGGCTCGTTG ATT CATGCAGCCTGTCGCGGCTGAAGCCGC TCCTACAGGGTGCCG 100 54
LTC53_RS00125   26214 ..   26244 -   -11  -2.82635   ATTGGGAGCACGACA       GCGATGCGGATGCC GAG GGCGCCGGCACCGC       CAGCGGCGATCGCTT  61 416
LTC53_RS00110   21549 ..   21572 - -18.2  -5.28176   GGCACGCACAAAAAA          GCCGGAAGCG CACG CGCTTCCGGC           TTCGTGTTGCAGTAC 100 48
LTC53_RS00105   20024 ..   20036 -  -6.9  -3.74693   GCGCATCGTAGCAAA                GGCGC GGT ACGCC                CGCCATGCGGGGAGT  61 325
LTC53_RS00100   19304 ..   19338 -  -7.7  -3.05384   TGGCGTGCCAGGCAA    TCGGCCACGG-GGGCG GCAT CGCCGTCCGTCGCCGC     GATTCTGCCCGCTAC  53 37
LTC53_RS00095   18307 ..   18339 -  -4.1  -3.85698   GCGCTGGCGCACAAA     CGCCTGGGC-TATGC CGAAC GCACGCGCCC-GGCG     CTGGACTGCAGCCGC  57 160
         cls   13864 ..   13886 -   -12  -3.21099   CGGTTCCACGACGAA           CTGCGCGG ACGGCCG CCGCGCAG           CAAGCGCTACAGCAG  66 32
LTC53_RS00065 NONE
LTC53_RS00060   12559 ..   12578 -   -15  -3.60627   TGACGCGACTGCAAA            CGCCACCG GCAA CGGTGGCG             TTTTTTTTGGCCCCG  81 211
