BJD12_RS00050	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS00050	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS00050	SM00267	diguanylate cyclase
BJD12_RS00060	SM00448	cheY-homologous receiver domain
BJD12_RS00065	SM00387	Histidine kinase-like ATPases
BJD12_RS00075	SM00014	Acid phosphatase homologues
BJD12_RS00140	SM00950	BJD12_RS00140
BJD12_RS00170	SM00528	Domain in histone-like proteins of HNS family
BJD12_RS00235	SM00248	ankyrin repeats
BJD12_RS00245	SM00487	DEAD-like helicases superfamily
BJD12_RS00245	SM00490	helicase superfamily c-terminal domain
BJD12_RS00330	SM00530	Helix-turn-helix XRE-family like proteins 
BJD12_RS00340	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS00435	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS00435	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS00470	SM00912	haemagglutination activity domain
BJD12_RS00550	SM00100	Cyclic nucleotide-monophosphate binding domain
BJD12_RS00550	SM00419	helix_turn_helix, cAMP Regulatory protein
BJD12_RS00630	SM01007	Class II Aldolase and Adducin N-terminal domain
BJD12_RS00680	SM00841	Elongation factor P, C-terminal
BJD12_RS00680	SM01185	BJD12_RS00680
BJD12_RS00685	SM00822	BJD12_RS00685
BJD12_RS00705	SM00899	BJD12_RS00705
BJD12_RS00740	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
BJD12_RS00750	SM00851	MGS-like domain
BJD12_RS00750	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BJD12_RS00780	SM00850	LytTr DNA-binding domain
BJD12_RS00785	SM00937	BJD12_RS00785
BJD12_RS00795	SM00448	cheY-homologous receiver domain
BJD12_RS00795	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BJD12_RS00805	SM00073	Histidine Phosphotransfer domain
BJD12_RS00805	SM00387	Histidine kinase-like ATPases
BJD12_RS00805	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS00805	SM00448	cheY-homologous receiver domain
BJD12_RS00830	SM00966	SpoVT / AbrB like domain 
BJD12_RS00850	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS00850	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS00850	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS00850	SM00091	PAS domain
BJD12_RS00850	SM00267	diguanylate cyclase
BJD12_RS00855	SM00448	cheY-homologous receiver domain
BJD12_RS00865	SM00138	Methyltransferase, chemotaxis proteins 
BJD12_RS00870	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS00870	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS00880	SM00260	Two component signalling adaptor domain
BJD12_RS00895	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS00895	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS00900	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS00900	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS00905	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS00905	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS00910	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS00910	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS00915	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS00915	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS00920	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS00930	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS00930	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS00935	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS00935	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS00935	SM01049	BJD12_RS00935
BJD12_RS00945	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS00945	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS00950	SM00073	Histidine Phosphotransfer domain
BJD12_RS00950	SM00260	Two component signalling adaptor domain
BJD12_RS00950	SM00387	Histidine kinase-like ATPases
BJD12_RS00950	SM01231	BJD12_RS00950
BJD12_RS00955	SM00448	cheY-homologous receiver domain
BJD12_RS00965	SM00260	Two component signalling adaptor domain
BJD12_RS01055	SM00073	Histidine Phosphotransfer domain
BJD12_RS01055	SM00260	Two component signalling adaptor domain
BJD12_RS01055	SM00387	Histidine kinase-like ATPases
BJD12_RS01055	SM01231	BJD12_RS01055
BJD12_RS01065	SM00448	cheY-homologous receiver domain
BJD12_RS01080	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS01080	SM00962	SRP54-type protein, GTPase domain
BJD12_RS01095	SM00267	diguanylate cyclase
BJD12_RS01105	SM00267	diguanylate cyclase
BJD12_RS01160	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS01225	SM00822	BJD12_RS01225
BJD12_RS01250	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS01255	SM00448	cheY-homologous receiver domain
BJD12_RS01265	SM00421	helix_turn_helix, Lux Regulon
BJD12_RS01265	SM00448	cheY-homologous receiver domain
BJD12_RS01305	SM00047	Lysozyme subfamily 2
BJD12_RS01360	SM00260	Two component signalling adaptor domain
BJD12_RS01360	SM00448	cheY-homologous receiver domain
BJD12_RS01365	SM00858	BJD12_RS01365
BJD12_RS01380	SM00387	Histidine kinase-like ATPases
BJD12_RS01385	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS01385	SM00267	diguanylate cyclase
BJD12_RS01385	SM00448	cheY-homologous receiver domain
BJD12_RS01390	SM00091	PAS domain
BJD12_RS01390	SM00387	Histidine kinase-like ATPases
BJD12_RS01395	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS01395	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS01395	SM00091	PAS domain
BJD12_RS01395	SM00267	diguanylate cyclase
BJD12_RS01410	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS01435	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS01435	SM01086	C-terminal, D2-small domain, of ClpB protein
BJD12_RS01445	SM00316	Ribosomal protein S1-like RNA-binding domain
BJD12_RS01465	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS01465	SM00843	BJD12_RS01465
BJD12_RS01480	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS01505	SM00562	BJD12_RS01505
BJD12_RS01515	SM00028	Tetratricopeptide repeats
BJD12_RS01530	SM00564	beta-propeller repeat
BJD12_RS01535	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS01540	SM00852	Probable molybdopterin binding domain
BJD12_RS01545	SM00450	Rhodanese Homology Domain
BJD12_RS01570	SM00852	Probable molybdopterin binding domain
BJD12_RS01590	SM00448	cheY-homologous receiver domain
BJD12_RS01590	SM01012	BJD12_RS01590
BJD12_RS01620	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BJD12_RS01645	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS01650	SM00869	Autotransporter beta-domain
BJD12_RS01655	SM00869	Autotransporter beta-domain
BJD12_RS01685	SM00318	Staphylococcal nuclease homologues
BJD12_RS01740	SM00822	BJD12_RS01740
BJD12_RS01815	SM00822	BJD12_RS01815
BJD12_RS02050	SM00363	S4 RNA-binding domain
BJD12_RS02055	SM00316	Ribosomal protein S1-like RNA-binding domain
BJD12_RS02060	SM00421	helix_turn_helix, Lux Regulon
BJD12_RS02060	SM00448	cheY-homologous receiver domain
BJD12_RS02065	SM00450	Rhodanese Homology Domain
BJD12_RS02085	SM00984	UDP binding domain
BJD12_RS02115	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BJD12_RS02115	SM00465	GIY-YIG type nucleases (URI domain)
BJD12_RS02125	SM00226	Low molecular weight phosphatase family
BJD12_RS02140	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS02155	SM00849	Metallo-beta-lactamase superfamily
BJD12_RS02170	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS02225	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS02310	SM00448	cheY-homologous receiver domain
BJD12_RS02315	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS02315	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS02315	SM00091	PAS domain
BJD12_RS02315	SM00387	Histidine kinase-like ATPases
BJD12_RS02315	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS02315	SM00448	cheY-homologous receiver domain
BJD12_RS02320	SM00316	Ribosomal protein S1-like RNA-binding domain
BJD12_RS02320	SM00732	Likely ribonuclease with RNase H fold.
BJD12_RS02390	SM00479	BJD12_RS02390
BJD12_RS02400	SM00529	Helix-turn-helix diphteria tox regulatory element
BJD12_RS02440	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS02445	SM00387	Histidine kinase-like ATPases
BJD12_RS02450	SM00421	helix_turn_helix, Lux Regulon
BJD12_RS02450	SM00448	cheY-homologous receiver domain
BJD12_RS02455	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS02470	SM00116	Domain in cystathionine beta-synthase and other proteins.
BJD12_RS02470	SM01240	BJD12_RS02470
BJD12_RS02495	SM00822	BJD12_RS02495
BJD12_RS02505	SM00028	Tetratricopeptide repeats
BJD12_RS02515	SM00411	bacterial (prokaryotic) histone like domain
BJD12_RS02520	SM00316	Ribosomal protein S1-like RNA-binding domain
BJD12_RS02595	SM00354	helix_turn _helix lactose operon repressor
BJD12_RS02620	SM00363	S4 RNA-binding domain
BJD12_RS02650	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS02725	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS02730	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS02760	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BJD12_RS02770	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
BJD12_RS02790	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BJD12_RS02835	SM00840	BJD12_RS02835
BJD12_RS02855	SM01234	BJD12_RS02855
BJD12_RS02935	SM00841	Elongation factor P, C-terminal
BJD12_RS02935	SM01185	BJD12_RS02935
BJD12_RS02945	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS02945	SM00267	diguanylate cyclase
BJD12_RS02945	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS02985	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS02990	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS02990	SM00487	DEAD-like helicases superfamily
BJD12_RS02990	SM00490	helicase superfamily c-terminal domain
BJD12_RS03020	SM00357	Cold shock protein domain
BJD12_RS03030	SM01322	BJD12_RS03030
BJD12_RS03040	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS03040	SM00267	diguanylate cyclase
BJD12_RS03055	SM00822	BJD12_RS03055
BJD12_RS03075	SM00853	MutL C terminal dimerisation domain
BJD12_RS03075	SM01340	BJD12_RS03075
BJD12_RS03080	SM00646	BJD12_RS03080
BJD12_RS03120	SM00474	3'-5' exonuclease
BJD12_RS03135	SM00528	Domain in histone-like proteins of HNS family
BJD12_RS03160	SM00530	Helix-turn-helix XRE-family like proteins 
BJD12_RS03175	SM00267	diguanylate cyclase
BJD12_RS03180	SM00260	Two component signalling adaptor domain
BJD12_RS03185	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS03185	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS03195	SM00487	DEAD-like helicases superfamily
BJD12_RS03195	SM00490	helicase superfamily c-terminal domain
BJD12_RS03250	SM00729	Elongator protein 3, MiaB family, Radical SAM
BJD12_RS03275	SM00116	Domain in cystathionine beta-synthase and other proteins.
BJD12_RS03275	SM01091	Transporter associated domain
BJD12_RS03310	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS03345	SM01230	BJD12_RS03345
BJD12_RS03355	SM01230	BJD12_RS03355
BJD12_RS03365	SM00267	diguanylate cyclase
BJD12_RS03365	SM00448	cheY-homologous receiver domain
BJD12_RS03425	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS03425	SM00091	PAS domain
BJD12_RS03425	SM00387	Histidine kinase-like ATPases
BJD12_RS03425	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS03425	SM00448	cheY-homologous receiver domain
BJD12_RS03425	SM01079	BJD12_RS03425
BJD12_RS03430	SM00448	cheY-homologous receiver domain
BJD12_RS03430	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BJD12_RS03580	SM01323	BJD12_RS03580
BJD12_RS03595	SM00344	helix_turn_helix ASNC type
BJD12_RS03665	SM00387	Histidine kinase-like ATPases
BJD12_RS03695	SM00944	Pro-kumamolisin, activation domain
BJD12_RS03740	SM01130	BJD12_RS03740
BJD12_RS03765	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS03770	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS03770	SM00962	SRP54-type protein, GTPase domain
BJD12_RS03770	SM00963	SRP54-type protein, helical bundle domain
BJD12_RS03780	SM00478	endonuclease III
BJD12_RS03795	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS03795	SM00091	PAS domain
BJD12_RS03795	SM00387	Histidine kinase-like ATPases
BJD12_RS03795	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS03795	SM00448	cheY-homologous receiver domain
BJD12_RS03845	SM00507	HNH nucleases
BJD12_RS03850	SM00861	Transketolase, pyrimidine binding domain
BJD12_RS03875	SM00849	Metallo-beta-lactamase superfamily
BJD12_RS03965	SM00422	helix_turn_helix, mercury resistance
BJD12_RS03970	SM00411	bacterial (prokaryotic) histone like domain
BJD12_RS03975	SM00873	B3/4 domain
BJD12_RS03975	SM00874	tRNA synthetase B5 domain
BJD12_RS03975	SM00896	Ferredoxin-fold anticodon binding domain
BJD12_RS04000	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BJD12_RS04005	SM00354	helix_turn _helix lactose operon repressor
BJD12_RS04010	SM00642	Alpha-amylase domain
BJD12_RS04040	SM00642	Alpha-amylase domain
BJD12_RS04090	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS04150	SM00487	DEAD-like helicases superfamily
BJD12_RS04150	SM00490	helicase superfamily c-terminal domain
BJD12_RS04240	SM01001	AIR carboxylase
BJD12_RS04260	SM00316	Ribosomal protein S1-like RNA-binding domain
BJD12_RS04260	SM00322	K homology RNA-binding domain
BJD12_RS04265	SM01387	BJD12_RS04265
BJD12_RS04285	SM00316	Ribosomal protein S1-like RNA-binding domain
BJD12_RS04285	SM00322	K homology RNA-binding domain
BJD12_RS04335	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BJD12_RS04340	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
BJD12_RS04385	SM00822	BJD12_RS04385
BJD12_RS04405	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS04405	SM00267	diguanylate cyclase
BJD12_RS04405	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS04470	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BJD12_RS04510	SM00257	Lysin motif
BJD12_RS04560	SM00729	Elongator protein 3, MiaB family, Radical SAM
BJD12_RS04630	SM01160	BJD12_RS04630
BJD12_RS04690	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS04690	SM00448	cheY-homologous receiver domain
BJD12_RS04695	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS04695	SM00387	Histidine kinase-like ATPases
BJD12_RS04695	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS04720	SM00098	Alkaline phosphatase homologues
BJD12_RS04725	SM00977	TilS substrate C-terminal domain
BJD12_RS04745	SM01351	BJD12_RS04745
BJD12_RS04780	SM00316	Ribosomal protein S1-like RNA-binding domain
BJD12_RS04875	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BJD12_RS04910	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS04950	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS04950	SM00267	diguanylate cyclase
BJD12_RS04955	SM00363	S4 RNA-binding domain
BJD12_RS04960	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS04960	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS04960	SM00091	PAS domain
BJD12_RS04960	SM00267	diguanylate cyclase
BJD12_RS04965	SM00487	DEAD-like helicases superfamily
BJD12_RS04965	SM00490	helicase superfamily c-terminal domain
BJD12_RS05010	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS05010	SM00478	endonuclease III
BJD12_RS05010	SM01009	AlkA N-terminal domain
BJD12_RS05110	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS05190	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS05190	SM00387	Histidine kinase-like ATPases
BJD12_RS05190	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS05195	SM00448	cheY-homologous receiver domain
BJD12_RS05195	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS05220	SM00487	DEAD-like helicases superfamily
BJD12_RS05220	SM00490	helicase superfamily c-terminal domain
BJD12_RS05220	SM00982	BJD12_RS05220
BJD12_RS05220	SM01058	CarD-like/TRCF domain
BJD12_RS05230	SM00073	Histidine Phosphotransfer domain
BJD12_RS05230	SM00260	Two component signalling adaptor domain
BJD12_RS05230	SM00387	Histidine kinase-like ATPases
BJD12_RS05230	SM01231	BJD12_RS05230
BJD12_RS05240	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS05240	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS05245	SM00260	Two component signalling adaptor domain
BJD12_RS05250	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS05250	SM00448	cheY-homologous receiver domain
BJD12_RS05255	SM00138	Methyltransferase, chemotaxis proteins 
BJD12_RS05260	SM00448	cheY-homologous receiver domain
BJD12_RS05270	SM00155	Phospholipase D. Active site motifs.
BJD12_RS05285	SM00855	Phosphoglycerate mutase family
BJD12_RS05345	SM00248	ankyrin repeats
BJD12_RS05375	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BJD12_RS05390	SM00829	Enoylreductase
BJD12_RS05460	SM00732	Likely ribonuclease with RNase H fold.
BJD12_RS05500	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS05515	SM00411	bacterial (prokaryotic) histone like domain
BJD12_RS05545	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
BJD12_RS05560	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS05590	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
BJD12_RS05595	SM00671	Sel1-like repeats.
BJD12_RS05730	SM00116	Domain in cystathionine beta-synthase and other proteins.
BJD12_RS05750	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS05795	SM00924	MgtE intracellular N domain
BJD12_RS05820	SM00656	BJD12_RS05820
BJD12_RS05835	SM00421	helix_turn_helix, Lux Regulon
BJD12_RS05870	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
BJD12_RS05895	SM00422	helix_turn_helix, mercury resistance
BJD12_RS05980	SM00387	Histidine kinase-like ATPases
BJD12_RS05980	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS05980	SM00448	cheY-homologous receiver domain
BJD12_RS05985	SM00387	Histidine kinase-like ATPases
BJD12_RS05985	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS05985	SM00448	cheY-homologous receiver domain
BJD12_RS05990	SM00387	Histidine kinase-like ATPases
BJD12_RS05990	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS05990	SM00448	cheY-homologous receiver domain
BJD12_RS05995	SM00867	YceI-like domain 
BJD12_RS06005	SM00867	YceI-like domain 
BJD12_RS06010	SM00357	Cold shock protein domain
BJD12_RS06075	SM00116	Domain in cystathionine beta-synthase and other proteins.
BJD12_RS06160	SM00244	prohibitin homologues
BJD12_RS06205	SM00812	Alpha-L-fucosidase
BJD12_RS06210	SM00636	BJD12_RS06210
BJD12_RS06230	SM00758	BJD12_RS06230
BJD12_RS06230	SM01217	BJD12_RS06230
BJD12_RS06235	SM01149	BJD12_RS06235
BJD12_RS06275	SM00369	Leucine-rich repeats, typical (most populated) subfamily
BJD12_RS06290	SM00327	von Willebrand factor (vWF) type A domain
BJD12_RS06310	SM00260	Two component signalling adaptor domain
BJD12_RS06320	SM00073	Histidine Phosphotransfer domain
BJD12_RS06320	SM00260	Two component signalling adaptor domain
BJD12_RS06320	SM00387	Histidine kinase-like ATPases
BJD12_RS06320	SM00448	cheY-homologous receiver domain
BJD12_RS06320	SM01231	BJD12_RS06320
BJD12_RS06325	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS06330	SM00260	Two component signalling adaptor domain
BJD12_RS06335	SM00448	cheY-homologous receiver domain
BJD12_RS06340	SM00448	cheY-homologous receiver domain
BJD12_RS06365	SM00491	BJD12_RS06365
BJD12_RS06390	SM00954	Region found in RelA / SpoT proteins
BJD12_RS06440	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS06440	SM00487	DEAD-like helicases superfamily
BJD12_RS06440	SM00490	helicase superfamily c-terminal domain
BJD12_RS06440	SM00847	Helicase associated domain (HA2)  Add an annotation
BJD12_RS06450	SM00341	Helicase and RNase D C-terminal
BJD12_RS06450	SM00487	DEAD-like helicases superfamily
BJD12_RS06450	SM00490	helicase superfamily c-terminal domain
BJD12_RS06450	SM00956	BJD12_RS06450
BJD12_RS06460	SM00448	cheY-homologous receiver domain
BJD12_RS06470	SM00363	S4 RNA-binding domain
BJD12_RS06480	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS06480	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS06485	SM00448	cheY-homologous receiver domain
BJD12_RS06515	SM00028	Tetratricopeptide repeats
BJD12_RS06550	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS06555	SM00860	SMI1 / KNR4 family
BJD12_RS06565	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BJD12_RS06600	SM00834	Putative regulatory protein
BJD12_RS06625	SM00849	Metallo-beta-lactamase superfamily
BJD12_RS06630	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BJD12_RS06680	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS06765	SM00855	Phosphoglycerate mutase family
BJD12_RS06820	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS06820	SM01086	C-terminal, D2-small domain, of ClpB protein
BJD12_RS06880	SM00564	beta-propeller repeat
BJD12_RS06885	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS06940	SM00387	Histidine kinase-like ATPases
BJD12_RS06940	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS06945	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS06945	SM00448	cheY-homologous receiver domain
BJD12_RS06980	SM00387	Histidine kinase-like ATPases
BJD12_RS06980	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS06985	SM00448	cheY-homologous receiver domain
BJD12_RS06985	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS07000	SM00642	Alpha-amylase domain
BJD12_RS07005	SM00528	Domain in histone-like proteins of HNS family
BJD12_RS07130	SM00220	Serine/Threonine protein kinases, catalytic domain
BJD12_RS07145	SM00530	Helix-turn-helix XRE-family like proteins 
BJD12_RS07180	SM00869	Autotransporter beta-domain
BJD12_RS07230	SM00354	helix_turn _helix lactose operon repressor
BJD12_RS07265	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BJD12_RS07335	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS07335	SM00387	Histidine kinase-like ATPases
BJD12_RS07365	SM00506	Appr-1"-p processing enzyme
BJD12_RS07410	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BJD12_RS07440	SM00849	Metallo-beta-lactamase superfamily
BJD12_RS07455	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS07520	SM00861	Transketolase, pyrimidine binding domain
BJD12_RS07535	SM00028	Tetratricopeptide repeats
BJD12_RS07535	SM00327	von Willebrand factor (vWF) type A domain
BJD12_RS07540	SM00327	von Willebrand factor (vWF) type A domain
BJD12_RS07555	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS07560	SM00965	Secretin and TonB N terminus short domain
BJD12_RS07615	SM00487	DEAD-like helicases superfamily
BJD12_RS07615	SM00490	helicase superfamily c-terminal domain
BJD12_RS07630	SM00858	BJD12_RS07630
BJD12_RS07640	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BJD12_RS07655	SM01130	BJD12_RS07655
BJD12_RS07670	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BJD12_RS07670	SM00954	Region found in RelA / SpoT proteins
BJD12_RS07705	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS07720	SM01409	BJD12_RS07720
BJD12_RS07725	SM00072	Guanylate kinase homologues.
BJD12_RS07750	SM00729	Elongator protein 3, MiaB family, Radical SAM
BJD12_RS07780	SM01011	Aminopeptidase P, N-terminal domain
BJD12_RS07890	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS08075	SM00028	Tetratricopeptide repeats
BJD12_RS08075	SM00421	helix_turn_helix, Lux Regulon
BJD12_RS08165	SM00464	Found in ATP-dependent protease La (LON)
BJD12_RS08220	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS08225	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS08240	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS08270	SM00917	LeuA allosteric (dimerisation) domain
BJD12_RS08280	SM01329	BJD12_RS08280
BJD12_RS08305	SM00267	diguanylate cyclase
BJD12_RS08355	SM00919	Malic enzyme, NAD binding domain
BJD12_RS08355	SM01274	BJD12_RS08355
BJD12_RS08370	SM00387	Histidine kinase-like ATPases
BJD12_RS08370	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS08370	SM00448	cheY-homologous receiver domain
BJD12_RS08400	SM00421	helix_turn_helix, Lux Regulon
BJD12_RS08400	SM00448	cheY-homologous receiver domain
BJD12_RS08410	SM00387	Histidine kinase-like ATPases
BJD12_RS08410	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS08415	SM00448	cheY-homologous receiver domain
BJD12_RS08415	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS08430	SM00822	BJD12_RS08430
BJD12_RS08435	SM00354	helix_turn _helix lactose operon repressor
BJD12_RS08450	SM00642	Alpha-amylase domain
BJD12_RS08460	SM01154	BJD12_RS08460
BJD12_RS08490	SM00450	Rhodanese Homology Domain
BJD12_RS08570	SM00829	Enoylreductase
BJD12_RS08595	SM00448	cheY-homologous receiver domain
BJD12_RS08595	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS08600	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS08600	SM00387	Histidine kinase-like ATPases
BJD12_RS08600	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS08625	SM00849	Metallo-beta-lactamase superfamily
BJD12_RS08675	SM00347	helix_turn_helix multiple antibiotic resistance protein
BJD12_RS08695	SM00656	BJD12_RS08695
BJD12_RS08730	SM00528	Domain in histone-like proteins of HNS family
BJD12_RS08745	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS08785	SM00882	Coenzyme A transferase
BJD12_RS08790	SM00882	Coenzyme A transferase
BJD12_RS08805	SM00984	UDP binding domain
BJD12_RS08830	SM00893	Electron transfer flavoprotein domain
BJD12_RS08835	SM00893	Electron transfer flavoprotein domain
BJD12_RS08915	SM00116	Domain in cystathionine beta-synthase and other proteins.
BJD12_RS08955	SM00487	DEAD-like helicases superfamily
BJD12_RS08955	SM00490	helicase superfamily c-terminal domain
BJD12_RS08975	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS09085	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS09105	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS09105	SM00448	cheY-homologous receiver domain
BJD12_RS09110	SM00387	Histidine kinase-like ATPases
BJD12_RS09130	SM00830	Chorismate mutase type II
BJD12_RS09140	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS09205	SM00986	Uracil DNA glycosylase superfamily
BJD12_RS09205	SM00987	UreE urease accessory protein, C-terminal domain 
BJD12_RS09230	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS09230	SM00930	BJD12_RS09230
BJD12_RS09250	SM00387	Histidine kinase-like ATPases
BJD12_RS09250	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS09250	SM00448	cheY-homologous receiver domain
BJD12_RS09300	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS09300	SM00091	PAS domain
BJD12_RS09300	SM00387	Histidine kinase-like ATPases
BJD12_RS09300	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS09300	SM00448	cheY-homologous receiver domain
BJD12_RS09320	SM01005	Alanine racemase, C-terminal domain
BJD12_RS09330	SM00344	helix_turn_helix ASNC type
BJD12_RS09385	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS09410	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
BJD12_RS09415	SM00986	Uracil DNA glycosylase superfamily
BJD12_RS09415	SM00987	UreE urease accessory protein, C-terminal domain 
BJD12_RS09425	SM00729	Elongator protein 3, MiaB family, Radical SAM
BJD12_RS09500	SM00448	cheY-homologous receiver domain
BJD12_RS09500	SM00850	LytTr DNA-binding domain
BJD12_RS09505	SM00387	Histidine kinase-like ATPases
BJD12_RS09540	SM00091	PAS domain
BJD12_RS09540	SM00138	Methyltransferase, chemotaxis proteins 
BJD12_RS09540	SM00911	HWE histidine kinase
BJD12_RS09545	SM00448	cheY-homologous receiver domain
BJD12_RS09555	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS09555	SM00448	cheY-homologous receiver domain
BJD12_RS09620	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BJD12_RS09670	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS09690	SM00477	DNA/RNA non-specific endonuclease
BJD12_RS09690	SM00892	DNA/RNA non-specific endonuclease
BJD12_RS09755	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS09875	SM00257	Lysin motif
BJD12_RS09900	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BJD12_RS09900	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BJD12_RS09900	SM00493	BJD12_RS09900
BJD12_RS09955	SM00487	DEAD-like helicases superfamily
BJD12_RS09955	SM00490	helicase superfamily c-terminal domain
BJD12_RS09995	SM00986	Uracil DNA glycosylase superfamily
BJD12_RS09995	SM00987	UreE urease accessory protein, C-terminal domain 
BJD12_RS10000	SM00448	cheY-homologous receiver domain
BJD12_RS10010	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS10015	SM00487	DEAD-like helicases superfamily
BJD12_RS10015	SM00490	helicase superfamily c-terminal domain
BJD12_RS10025	SM00357	Cold shock protein domain
BJD12_RS10025	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS10025	SM00959	Rho termination factor, N-terminal domain
BJD12_RS10060	SM00257	Lysin motif
BJD12_RS10100	SM01150	BJD12_RS10100
BJD12_RS10145	SM00644	BJD12_RS10145
BJD12_RS10155	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BJD12_RS10190	SM01217	BJD12_RS10190
BJD12_RS10195	SM00905	Dihydroneopterin aldolase
BJD12_RS10220	SM00400	zinc finger
BJD12_RS10220	SM00493	BJD12_RS10220
BJD12_RS10220	SM00766	DNA primase DnaG DnaB-binding
BJD12_RS10330	SM00363	S4 RNA-binding domain
BJD12_RS10380	SM00470	ParB-like nuclease domain
BJD12_RS10405	SM01259	BJD12_RS10405
BJD12_RS10435	SM00836	DALR anticodon binding domain
BJD12_RS10435	SM01016	Arginyl tRNA synthetase N terminal dom
BJD12_RS10505	SM00938	Nitrogen regulatory protein P-II
BJD12_RS10515	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS10530	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS10555	SM00244	prohibitin homologues
BJD12_RS10600	SM00448	cheY-homologous receiver domain
BJD12_RS10600	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS10605	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS10605	SM00387	Histidine kinase-like ATPases
BJD12_RS10605	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS10625	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BJD12_RS10665	SM01060	BJD12_RS10665
BJD12_RS10680	SM00421	helix_turn_helix, Lux Regulon
BJD12_RS10680	SM00448	cheY-homologous receiver domain
BJD12_RS10700	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS10740	SM00849	Metallo-beta-lactamase superfamily
BJD12_RS10770	SM00960	Roadblock/LC7 domain
BJD12_RS10835	SM00387	Histidine kinase-like ATPases
BJD12_RS10840	SM00448	cheY-homologous receiver domain
BJD12_RS10840	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS10865	SM00248	ankyrin repeats
BJD12_RS10870	SM01060	BJD12_RS10870
BJD12_RS10880	SM00491	BJD12_RS10880
BJD12_RS10915	SM01004	Delta-aminolevulinic acid dehydratase
BJD12_RS10965	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
BJD12_RS10985	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS10995	SM00530	Helix-turn-helix XRE-family like proteins 
BJD12_RS11025	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS11085	SM00881	CoA binding domain
BJD12_RS11090	SM00116	Domain in cystathionine beta-synthase and other proteins.
BJD12_RS11090	SM00924	MgtE intracellular N domain
BJD12_RS11115	SM00226	Low molecular weight phosphatase family
BJD12_RS11120	SM00248	ankyrin repeats
BJD12_RS11130	SM00825	Beta-ketoacyl synthase
BJD12_RS11150	SM00822	BJD12_RS11150
BJD12_RS11180	SM00563	Phosphate acyltransferases
BJD12_RS11245	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BJD12_RS11245	SM00474	3'-5' exonuclease
BJD12_RS11245	SM00475	5'-3' exonuclease
BJD12_RS11245	SM00482	DNA polymerase A domain
BJD12_RS11260	SM00912	haemagglutination activity domain
BJD12_RS11280	SM00331	Sigma factor PP2C-like phosphatases
BJD12_RS11280	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BJD12_RS11320	SM00240	Forkhead associated domain
BJD12_RS11340	SM00028	Tetratricopeptide repeats
BJD12_RS11350	SM00220	Serine/Threonine protein kinases, catalytic domain
BJD12_RS11405	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS11405	SM01086	C-terminal, D2-small domain, of ClpB protein
BJD12_RS11445	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS11455	SM01266	BJD12_RS11455
BJD12_RS11475	SM00155	Phospholipase D. Active site motifs.
BJD12_RS11595	SM00421	helix_turn_helix, Lux Regulon
BJD12_RS11595	SM00448	cheY-homologous receiver domain
BJD12_RS11645	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BJD12_RS11660	SM00346	helix_turn_helix isocitrate lyase regulation
BJD12_RS11670	SM00091	PAS domain
BJD12_RS11670	SM00387	Histidine kinase-like ATPases
BJD12_RS11670	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS11670	SM00448	cheY-homologous receiver domain
BJD12_RS11700	SM00564	beta-propeller repeat
BJD12_RS11750	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS11835	SM00354	helix_turn _helix lactose operon repressor
BJD12_RS11850	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BJD12_RS11860	SM00758	BJD12_RS11860
BJD12_RS11860	SM01217	BJD12_RS11860
BJD12_RS11890	SM00612	BJD12_RS11890
BJD12_RS11915	SM00633	Glycosyl hydrolase family 10
BJD12_RS11965	SM00829	Enoylreductase
BJD12_RS11970	SM00563	Phosphate acyltransferases
BJD12_RS11980	SM00354	helix_turn _helix lactose operon repressor
BJD12_RS12000	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BJD12_RS12035	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS12035	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS12050	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BJD12_RS12050	SM01232	BJD12_RS12050
BJD12_RS12085	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS12140	SM00347	helix_turn_helix multiple antibiotic resistance protein
BJD12_RS12175	SM00155	Phospholipase D. Active site motifs.
BJD12_RS12335	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS12365	SM00901	BJD12_RS12365
BJD12_RS12385	SM00829	Enoylreductase
BJD12_RS12430	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS12430	SM00091	PAS domain
BJD12_RS12430	SM00267	diguanylate cyclase
BJD12_RS12490	SM00014	Acid phosphatase homologues
BJD12_RS12505	SM00028	Tetratricopeptide repeats
BJD12_RS12530	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS12530	SM00760	Bacterial dnaA protein helix-turn-helix domain
BJD12_RS12535	SM00480	DNA polymerase III beta subunit
BJD12_RS12545	SM00387	Histidine kinase-like ATPases
BJD12_RS12545	SM00433	TopoisomeraseII
BJD12_RS12560	SM00028	Tetratricopeptide repeats
BJD12_RS12610	SM00155	Phospholipase D. Active site motifs.
BJD12_RS12650	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BJD12_RS12650	SM00245	tail specific protease
BJD12_RS12695	SM00829	Enoylreductase
BJD12_RS12825	SM00487	DEAD-like helicases superfamily
BJD12_RS12825	SM00490	helicase superfamily c-terminal domain
BJD12_RS12860	SM00822	BJD12_RS12860
BJD12_RS12930	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS12930	SM00387	Histidine kinase-like ATPases
BJD12_RS12930	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS12930	SM00448	cheY-homologous receiver domain
BJD12_RS13140	SM00829	Enoylreductase
BJD12_RS13155	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
BJD12_RS13190	SM00421	helix_turn_helix, Lux Regulon
BJD12_RS13190	SM00448	cheY-homologous receiver domain
BJD12_RS13200	SM00028	Tetratricopeptide repeats
BJD12_RS13200	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS13315	SM00642	Alpha-amylase domain
BJD12_RS13320	SM00642	Alpha-amylase domain
BJD12_RS13325	SM00642	Alpha-amylase domain
BJD12_RS13400	SM00354	helix_turn _helix lactose operon repressor
BJD12_RS13440	SM00344	helix_turn_helix ASNC type
BJD12_RS13465	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS13480	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS13530	SM00855	Phosphoglycerate mutase family
BJD12_RS13535	SM00867	YceI-like domain 
BJD12_RS13540	SM00155	Phospholipase D. Active site motifs.
BJD12_RS13555	SM00563	Phosphate acyltransferases
BJD12_RS13565	SM00028	Tetratricopeptide repeats
BJD12_RS13590	SM01230	BJD12_RS13590
BJD12_RS13595	SM00938	Nitrogen regulatory protein P-II
BJD12_RS13605	SM00387	Histidine kinase-like ATPases
BJD12_RS13605	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS13610	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS13610	SM00448	cheY-homologous receiver domain
BJD12_RS13675	SM00450	Rhodanese Homology Domain
BJD12_RS13700	SM00387	Histidine kinase-like ATPases
BJD12_RS13700	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS13705	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS13705	SM00448	cheY-homologous receiver domain
BJD12_RS13815	SM00563	Phosphate acyltransferases
BJD12_RS13860	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS13885	SM00100	Cyclic nucleotide-monophosphate binding domain
BJD12_RS13885	SM00267	diguanylate cyclase
BJD12_RS13910	SM00878	Biotin carboxylase C-terminal domain
BJD12_RS13935	SM00953	BJD12_RS13935
BJD12_RS13980	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BJD12_RS14010	SM00347	helix_turn_helix multiple antibiotic resistance protein
BJD12_RS14050	SM00829	Enoylreductase
BJD12_RS14080	SM00487	DEAD-like helicases superfamily
BJD12_RS14080	SM00490	helicase superfamily c-terminal domain
BJD12_RS14080	SM00847	Helicase associated domain (HA2)  Add an annotation
BJD12_RS14085	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS14085	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS14095	SM00095	Transthyretin
BJD12_RS14145	SM00028	Tetratricopeptide repeats
BJD12_RS14260	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS14320	SM00829	Enoylreductase
BJD12_RS14325	SM00829	Enoylreductase
BJD12_RS14350	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS14475	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BJD12_RS14480	SM00347	helix_turn_helix multiple antibiotic resistance protein
BJD12_RS14505	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS14535	SM00420	helix_turn_helix, Deoxyribose operon repressor
BJD12_RS14535	SM01134	BJD12_RS14535
BJD12_RS14545	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BJD12_RS14545	SM00895	BJD12_RS14545
BJD12_RS14555	SM00882	Coenzyme A transferase
BJD12_RS14560	SM00882	Coenzyme A transferase
BJD12_RS14580	SM00998	Adenylosuccinate lyase C-terminus
BJD12_RS14600	SM00346	helix_turn_helix isocitrate lyase regulation
BJD12_RS14605	SM00090	RIO-like kinase
BJD12_RS14620	SM01228	BJD12_RS14620
BJD12_RS14675	SM00729	Elongator protein 3, MiaB family, Radical SAM
BJD12_RS14675	SM00876	Biotin and Thiamin Synthesis associated domain
BJD12_RS14705	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS14705	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS14745	SM00267	diguanylate cyclase
BJD12_RS14755	SM00642	Alpha-amylase domain
BJD12_RS14760	SM00642	Alpha-amylase domain
BJD12_RS14770	SM00642	Alpha-amylase domain
BJD12_RS14780	SM00642	Alpha-amylase domain
BJD12_RS14835	SM00822	BJD12_RS14835
BJD12_RS14850	SM00487	DEAD-like helicases superfamily
BJD12_RS14850	SM00490	helicase superfamily c-terminal domain
BJD12_RS14870	SM00326	Src homology 3 domains
BJD12_RS14875	SM00861	Transketolase, pyrimidine binding domain
BJD12_RS14885	SM00237	Domains in Na-Ca exchangers and integrin-beta4
BJD12_RS14905	SM00347	helix_turn_helix multiple antibiotic resistance protein
BJD12_RS14995	SM00271	DnaJ molecular chaperone homology domain
BJD12_RS15020	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BJD12_RS15045	SM00903	Flavin reductase like domain
BJD12_RS15065	SM00100	Cyclic nucleotide-monophosphate binding domain
BJD12_RS15065	SM00419	helix_turn_helix, cAMP Regulatory protein
BJD12_RS15120	SM00073	Histidine Phosphotransfer domain
BJD12_RS15120	SM00387	Histidine kinase-like ATPases
BJD12_RS15120	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS15120	SM00448	cheY-homologous receiver domain
BJD12_RS15125	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS15125	SM00267	diguanylate cyclase
BJD12_RS15125	SM00448	cheY-homologous receiver domain
BJD12_RS15170	SM00563	Phosphate acyltransferases
BJD12_RS15190	SM01209	BJD12_RS15190
BJD12_RS15190	SM01210	BJD12_RS15190
BJD12_RS15200	SM00798	AICARFT/IMPCHase bienzyme
BJD12_RS15200	SM00851	MGS-like domain
BJD12_RS15215	SM00195	Dual specificity phosphatase, catalytic domain
BJD12_RS15235	SM00563	Phosphate acyltransferases
BJD12_RS15260	SM00530	Helix-turn-helix XRE-family like proteins 
BJD12_RS15285	SM00878	Biotin carboxylase C-terminal domain
BJD12_RS15320	SM00883	Chaperonin 10 Kd subunit
BJD12_RS15425	SM00867	YceI-like domain 
BJD12_RS15470	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BJD12_RS15480	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BJD12_RS15480	SM00895	BJD12_RS15480
BJD12_RS15505	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS15505	SM00331	Sigma factor PP2C-like phosphatases
BJD12_RS15590	SM01321	BJD12_RS15590
BJD12_RS15745	SM00267	diguanylate cyclase
BJD12_RS15830	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BJD12_RS15830	SM01232	BJD12_RS15830
BJD12_RS15850	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS15860	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS15860	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS15860	SM00091	PAS domain
BJD12_RS15860	SM00267	diguanylate cyclase
BJD12_RS15865	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS15865	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS15865	SM01049	BJD12_RS15865
BJD12_RS15870	SM00637	BJD12_RS15870
BJD12_RS15880	SM00267	diguanylate cyclase
BJD12_RS15935	SM00448	cheY-homologous receiver domain
BJD12_RS15935	SM00850	LytTr DNA-binding domain
BJD12_RS16035	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS16035	SM01086	C-terminal, D2-small domain, of ClpB protein
BJD12_RS16070	SM00267	diguanylate cyclase
BJD12_RS16075	SM01263	BJD12_RS16075
BJD12_RS16090	SM00564	beta-propeller repeat
BJD12_RS16095	SM00062	Bacterial periplasmic substrate-binding proteins
BJD12_RS16095	SM00248	ankyrin repeats
BJD12_RS16120	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS16130	SM00268	Actin
BJD12_RS16155	SM00710	Parallel beta-helix repeats
BJD12_RS16170	SM00936	Penicillin-binding protein 5, C-terminal domain 
BJD12_RS16190	SM00729	Elongator protein 3, MiaB family, Radical SAM
BJD12_RS16195	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BJD12_RS16195	SM00245	tail specific protease
BJD12_RS16250	SM01350	BJD12_RS16250
BJD12_RS16260	SM00749	bacterial OsmY and nodulation domain
BJD12_RS16265	SM00387	Histidine kinase-like ATPases
BJD12_RS16265	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS16270	SM00448	cheY-homologous receiver domain
BJD12_RS16275	SM00387	Histidine kinase-like ATPases
BJD12_RS16275	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS16275	SM00448	cheY-homologous receiver domain
BJD12_RS16305	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
BJD12_RS16330	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS16380	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BJD12_RS16380	SM00866	BJD12_RS16380
BJD12_RS16390	SM00354	helix_turn _helix lactose operon repressor
BJD12_RS16405	SM00245	tail specific protease
BJD12_RS16485	SM01211	BJD12_RS16485
BJD12_RS16510	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS16580	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BJD12_RS16580	SM00866	BJD12_RS16580
BJD12_RS16655	SM00028	Tetratricopeptide repeats
BJD12_RS16680	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS16750	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BJD12_RS16780	SM00387	Histidine kinase-like ATPases
BJD12_RS16780	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS16785	SM00448	cheY-homologous receiver domain
BJD12_RS16785	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS16900	SM00842	Cell division protein FtsA
BJD12_RS16905	SM00864	Tubulin/FtsZ family, GTPase domain
BJD12_RS16905	SM00865	Tubulin/FtsZ family, C-terminal domain
BJD12_RS16925	SM00957	SecA DEAD-like domain
BJD12_RS16925	SM00958	SecA preprotein cross-linking domain
BJD12_RS16930	SM00869	Autotransporter beta-domain
BJD12_RS16965	SM00829	Enoylreductase
BJD12_RS16990	SM00855	Phosphoglycerate mutase family
BJD12_RS16995	SM00642	Alpha-amylase domain
BJD12_RS17030	SM00996	S-adenosyl-L-homocysteine hydrolase
BJD12_RS17030	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
BJD12_RS17145	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS17165	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS17175	SM00448	cheY-homologous receiver domain
BJD12_RS17175	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS17180	SM00387	Histidine kinase-like ATPases
BJD12_RS17180	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS17240	SM00650	Ribosomal RNA adenine dimethylases
BJD12_RS17300	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BJD12_RS17300	SM00895	BJD12_RS17300
BJD12_RS17335	SM00347	helix_turn_helix multiple antibiotic resistance protein
BJD12_RS17400	SM00448	cheY-homologous receiver domain
BJD12_RS17405	SM00387	Histidine kinase-like ATPases
BJD12_RS17405	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS17405	SM00448	cheY-homologous receiver domain
BJD12_RS17410	SM00421	helix_turn_helix, Lux Regulon
BJD12_RS17475	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BJD12_RS17475	SM00475	5'-3' exonuclease
BJD12_RS17505	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BJD12_RS17505	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BJD12_RS17620	SM00852	Probable molybdopterin binding domain
BJD12_RS17625	SM00028	Tetratricopeptide repeats
BJD12_RS17630	SM00937	BJD12_RS17630
BJD12_RS17640	SM00028	Tetratricopeptide repeats
BJD12_RS17660	SM01400	BJD12_RS17660
BJD12_RS17750	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
BJD12_RS17750	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BJD12_RS17755	SM00649	Ribosomal protein L11/L12
BJD12_RS17780	SM00663	RNA polymerase I subunit A N-terminus
BJD12_RS17795	SM00838	Elongation factor G C-terminus
BJD12_RS17795	SM00889	Elongation factor G, domain IV
BJD12_RS17805	SM01403	BJD12_RS17805
BJD12_RS17825	SM01382	BJD12_RS17825
BJD12_RS17825	SM01383	BJD12_RS17825
BJD12_RS17840	SM00322	K homology RNA-binding domain
BJD12_RS17860	SM01374	BJD12_RS17860
BJD12_RS17865	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BJD12_RS17925	SM00363	S4 RNA-binding domain
BJD12_RS17925	SM01390	BJD12_RS17925
BJD12_RS17930	SM00662	RNA polymerases D
BJD12_RS17970	SM00838	Elongation factor G C-terminus
BJD12_RS18005	SM00829	Enoylreductase
BJD12_RS18055	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS18070	SM00829	Enoylreductase
BJD12_RS18090	SM00855	Phosphoglycerate mutase family
BJD12_RS18140	SM00014	Acid phosphatase homologues
BJD12_RS18160	SM00387	Histidine kinase-like ATPases
BJD12_RS18160	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS18165	SM00448	cheY-homologous receiver domain
BJD12_RS18165	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS18185	SM01329	BJD12_RS18185
BJD12_RS18315	SM00400	zinc finger
BJD12_RS18340	SM00646	BJD12_RS18340
BJD12_RS18435	SM00495	Chitin-binding domain type 3
BJD12_RS18505	SM00091	PAS domain
BJD12_RS18505	SM00387	Histidine kinase-like ATPases
BJD12_RS18525	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS18525	SM00994	ClpX C4-type zinc finger
BJD12_RS18525	SM01086	C-terminal, D2-small domain, of ClpB protein
BJD12_RS18530	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS18530	SM00464	Found in ATP-dependent protease La (LON)
BJD12_RS18535	SM00411	bacterial (prokaryotic) histone like domain
BJD12_RS18560	SM00257	Lysin motif
BJD12_RS18565	SM00849	Metallo-beta-lactamase superfamily
BJD12_RS18580	SM00479	BJD12_RS18580
BJD12_RS18585	SM00331	Sigma factor PP2C-like phosphatases
BJD12_RS18585	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BJD12_RS18610	SM00849	Metallo-beta-lactamase superfamily
BJD12_RS18615	SM00729	Elongator protein 3, MiaB family, Radical SAM
BJD12_RS18680	SM00530	Helix-turn-helix XRE-family like proteins 
BJD12_RS18685	SM00271	DnaJ molecular chaperone homology domain
BJD12_RS18785	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS18795	SM00493	BJD12_RS18795
BJD12_RS18810	SM00460	Transglutaminase/protease-like homologues
BJD12_RS18860	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BJD12_RS18865	SM00822	BJD12_RS18865
BJD12_RS18875	SM00825	Beta-ketoacyl synthase
BJD12_RS18910	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS18955	SM01359	BJD12_RS18955
BJD12_RS18955	SM01360	BJD12_RS18955
BJD12_RS19020	SM00271	DnaJ molecular chaperone homology domain
BJD12_RS19025	SM00448	cheY-homologous receiver domain
BJD12_RS19030	SM00244	prohibitin homologues
BJD12_RS19035	SM00244	prohibitin homologues
BJD12_RS19040	SM00788	Adenylosuccinate synthetase
BJD12_RS19090	SM00487	DEAD-like helicases superfamily
BJD12_RS19140	SM00855	Phosphoglycerate mutase family
BJD12_RS19195	SM00052	Putative diguanylate phosphodiesterase
BJD12_RS19200	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BJD12_RS19225	SM01217	BJD12_RS19225
BJD12_RS19230	SM00829	Enoylreductase
BJD12_RS19240	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BJD12_RS19245	SM01092	CO dehydrogenase flavoprotein C-terminal domain
BJD12_RS19260	SM00974	BJD12_RS19260
BJD12_RS19295	SM00481	DNA polymerase alpha chain like domain
BJD12_RS19335	SM00091	PAS domain
BJD12_RS19335	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS19345	SM01060	BJD12_RS19345
BJD12_RS19400	SM00448	cheY-homologous receiver domain
BJD12_RS19400	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS19405	SM00387	Histidine kinase-like ATPases
BJD12_RS19405	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS19440	SM00421	helix_turn_helix, Lux Regulon
BJD12_RS19440	SM00448	cheY-homologous receiver domain
BJD12_RS19455	SM00478	endonuclease III
BJD12_RS19480	SM00244	prohibitin homologues
BJD12_RS19570	SM00904	Riboflavin kinase
BJD12_RS19615	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BJD12_RS19620	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS19630	SM00862	Transcriptional regulatory protein, C terminal
BJD12_RS19635	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS19660	SM00387	Histidine kinase-like ATPases
BJD12_RS19670	SM00387	Histidine kinase-like ATPases
BJD12_RS19670	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS19675	SM00387	Histidine kinase-like ATPases
BJD12_RS19675	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS19675	SM00448	cheY-homologous receiver domain
BJD12_RS19700	SM00387	Histidine kinase-like ATPases
BJD12_RS19700	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS19700	SM00448	cheY-homologous receiver domain
BJD12_RS19710	SM00138	Methyltransferase, chemotaxis proteins 
BJD12_RS19715	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS19715	SM00387	Histidine kinase-like ATPases
BJD12_RS19715	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS19715	SM00448	cheY-homologous receiver domain
BJD12_RS19720	SM00091	PAS domain
BJD12_RS19720	SM00387	Histidine kinase-like ATPases
BJD12_RS19720	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS19725	SM00448	cheY-homologous receiver domain
BJD12_RS19745	SM00813	Alpha-L-arabinofuranosidase C-terminus
BJD12_RS19765	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS19765	SM00962	SRP54-type protein, GTPase domain
BJD12_RS19765	SM00963	SRP54-type protein, helical bundle domain
BJD12_RS19810	SM00363	S4 RNA-binding domain
BJD12_RS19825	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BJD12_RS19825	SM00534	ATPase domain of DNA mismatch repair MUTS family
BJD12_RS19885	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS19885	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS19895	SM00812	Alpha-L-fucosidase
BJD12_RS19920	SM00530	Helix-turn-helix XRE-family like proteins 
BJD12_RS19975	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BJD12_RS19980	SM00838	Elongation factor G C-terminus
BJD12_RS19995	SM00358	Double-stranded RNA binding motif
BJD12_RS19995	SM00535	Ribonuclease III family
BJD12_RS20015	SM00448	cheY-homologous receiver domain
BJD12_RS20030	SM01118	BJD12_RS20030
BJD12_RS20065	SM00357	Cold shock protein domain
BJD12_RS20080	SM00487	DEAD-like helicases superfamily
BJD12_RS20080	SM00490	helicase superfamily c-terminal domain
BJD12_RS20110	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS20110	SM00267	diguanylate cyclase
BJD12_RS20130	SM00869	Autotransporter beta-domain
BJD12_RS20135	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BJD12_RS20445	SM00481	DNA polymerase alpha chain like domain
BJD12_RS20485	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BJD12_RS20515	SM00267	diguanylate cyclase
BJD12_RS20540	SM00972	Spore Coat Protein U domain
BJD12_RS20555	SM00972	Spore Coat Protein U domain
BJD12_RS20565	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BJD12_RS20590	SM01172	BJD12_RS20590
BJD12_RS20595	SM00710	Parallel beta-helix repeats
BJD12_RS20595	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
BJD12_RS20625	SM00434	DNA Topoisomerase IV
BJD12_RS20630	SM00342	helix_turn_helix, arabinose operon control protein
BJD12_RS20635	SM00347	helix_turn_helix multiple antibiotic resistance protein
BJD12_RS20665	SM01217	BJD12_RS20665
BJD12_RS20670	SM00631	BJD12_RS20670
BJD12_RS20700	SM00347	helix_turn_helix multiple antibiotic resistance protein
BJD12_RS20720	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS20725	SM00347	helix_turn_helix multiple antibiotic resistance protein
BJD12_RS20750	SM00947	Carbonic anhydrase
BJD12_RS20765	SM00357	Cold shock protein domain
BJD12_RS20805	SM00460	Transglutaminase/protease-like homologues
BJD12_RS20870	SM00822	BJD12_RS20870
BJD12_RS20880	SM00267	diguanylate cyclase
BJD12_RS20890	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BJD12_RS20890	SM00267	diguanylate cyclase
BJD12_RS20955	SM00271	DnaJ molecular chaperone homology domain
BJD12_RS20995	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS21020	SM00861	Transketolase, pyrimidine binding domain
BJD12_RS21030	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
BJD12_RS21045	SM00116	Domain in cystathionine beta-synthase and other proteins.
BJD12_RS21045	SM01091	Transporter associated domain
BJD12_RS21075	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS21080	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BJD12_RS21115	SM00354	helix_turn _helix lactose operon repressor
BJD12_RS21135	SM01018	B12 binding domain
BJD12_RS21145	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BJD12_RS21165	SM00316	Ribosomal protein S1-like RNA-binding domain
BJD12_RS21165	SM00357	Cold shock protein domain
BJD12_RS21165	SM00955	BJD12_RS21165
BJD12_RS21175	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BJD12_RS21180	SM00267	diguanylate cyclase
BJD12_RS21185	SM00479	BJD12_RS21185
BJD12_RS21210	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS21245	SM00947	Carbonic anhydrase
BJD12_RS21255	SM00478	endonuclease III
BJD12_RS21280	SM00450	Rhodanese Homology Domain
BJD12_RS21290	SM00644	BJD12_RS21290
BJD12_RS21320	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS21325	SM00981	BJD12_RS21325
BJD12_RS21360	SM00479	BJD12_RS21360
BJD12_RS21385	SM00947	Carbonic anhydrase
BJD12_RS21440	SM00771	ZipA, C-terminal domain (FtsZ-binding)
BJD12_RS21455	SM00292	breast cancer carboxy-terminal domain
BJD12_RS21455	SM00532	Ligase N family
BJD12_RS21495	SM00434	DNA Topoisomerase IV
BJD12_RS21500	SM00564	beta-propeller repeat
BJD12_RS21540	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BJD12_RS21540	SM00866	BJD12_RS21540
BJD12_RS21565	SM00240	Forkhead associated domain
BJD12_RS21585	SM00830	Chorismate mutase type II
BJD12_RS21655	SM00530	Helix-turn-helix XRE-family like proteins 
BJD12_RS21780	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS21780	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BJD12_RS21785	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS21785	SM00091	PAS domain
BJD12_RS21785	SM00387	Histidine kinase-like ATPases
BJD12_RS21785	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS21785	SM00448	cheY-homologous receiver domain
BJD12_RS21790	SM00448	cheY-homologous receiver domain
BJD12_RS21795	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS21800	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS21800	SM00091	PAS domain
BJD12_RS21800	SM00387	Histidine kinase-like ATPases
BJD12_RS21800	SM00388	His Kinase A (phosphoacceptor) domain
BJD12_RS21800	SM00448	cheY-homologous receiver domain
BJD12_RS21945	SM00729	Elongator protein 3, MiaB family, Radical SAM
BJD12_RS21955	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS21980	SM01091	Transporter associated domain
BJD12_RS22015	SM00387	Histidine kinase-like ATPases
BJD12_RS22015	SM00433	TopoisomeraseII
BJD12_RS22040	SM01192	BJD12_RS22040
BJD12_RS22040	SM01193	BJD12_RS22040
BJD12_RS22065	SM00463	Small MutS-related domain
BJD12_RS22085	SM00257	Lysin motif
BJD12_RS22095	SM01103	BJD12_RS22095
BJD12_RS22105	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS22150	SM00382	ATPases associated with a variety of cellular activities
BJD12_RS22160	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BJD12_RS22175	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BJD12_RS22175	SM00091	PAS domain
BJD12_RS22175	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BJD12_RS22225	SM00670	Large family of predicted nucleotide-binding domains
BJD12_RS22245	SM01130	BJD12_RS22245
BJD12_RS22270	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BJD12_RS22315	SM00758	BJD12_RS22315
BJD12_RS22355	SM00646	BJD12_RS22355
