XF_RS00005	SM00382	ATPases associated with a variety of cellular activities
XF_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
XF_RS00010	SM00480	DNA polymerase III beta subunit
XF_RS00025	SM00387	Histidine kinase-like ATPases
XF_RS00025	SM00433	TopoisomeraseII
XF_RS00040	SM00028	Tetratricopeptide repeats
XF_RS00145	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
XF_RS00185	SM00487	DEAD-like helicases superfamily
XF_RS00185	SM00490	helicase superfamily c-terminal domain
XF_RS00185	SM00982	XF_RS00185
XF_RS00185	SM01058	CarD-like/TRCF domain
XF_RS00205	SM00878	Biotin carboxylase C-terminal domain
XF_RS00240	SM00470	ParB-like nuclease domain
XF_RS00250	SM00729	Elongator protein 3, MiaB family, Radical SAM
XF_RS00250	SM00876	Biotin and Thiamin Synthesis associated domain
XF_RS00295	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
XF_RS00295	SM01232	XF_RS00295
XF_RS00305	SM00382	ATPases associated with a variety of cellular activities
XF_RS00305	SM00962	SRP54-type protein, GTPase domain
XF_RS00305	SM00963	SRP54-type protein, helical bundle domain
XF_RS00385	SM00382	ATPases associated with a variety of cellular activities
XF_RS00395	SM01103	XF_RS00395
XF_RS00440	SM00812	Alpha-L-fucosidase
XF_RS00490	SM00710	Parallel beta-helix repeats
XF_RS00490	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
XF_RS00505	SM00382	ATPases associated with a variety of cellular activities
XF_RS00510	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
XF_RS00605	SM00822	XF_RS00605
XF_RS00615	SM00836	DALR anticodon binding domain
XF_RS00615	SM01016	Arginyl tRNA synthetase N terminal dom
XF_RS00655	SM00645	Papain family cysteine protease
XF_RS00725	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
XF_RS00725	SM01232	XF_RS00725
XF_RS00740	SM00822	XF_RS00740
XF_RS00790	SM00244	prohibitin homologues
XF_RS00820	SM00487	DEAD-like helicases superfamily
XF_RS00820	SM00490	helicase superfamily c-terminal domain
XF_RS00840	SM00563	Phosphate acyltransferases
XF_RS00865	SM00481	DNA polymerase alpha chain like domain
XF_RS00875	SM00271	DnaJ molecular chaperone homology domain
XF_RS00910	SM00347	helix_turn_helix multiple antibiotic resistance protein
XF_RS00940	SM01323	XF_RS00940
XF_RS01005	SM00316	Ribosomal protein S1-like RNA-binding domain
XF_RS01005	SM00322	K homology RNA-binding domain
XF_RS01025	SM01387	XF_RS01025
XF_RS01030	SM00316	Ribosomal protein S1-like RNA-binding domain
XF_RS01030	SM00322	K homology RNA-binding domain
XF_RS01080	SM00487	DEAD-like helicases superfamily
XF_RS01080	SM00490	helicase superfamily c-terminal domain
XF_RS01085	SM00893	Electron transfer flavoprotein domain
XF_RS01090	SM00893	Electron transfer flavoprotein domain
XF_RS01145	SM00869	Autotransporter beta-domain
XF_RS01210	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
XF_RS01230	SM00966	SpoVT / AbrB like domain 
XF_RS01345	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
XF_RS01350	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
XF_RS01405	SM00448	cheY-homologous receiver domain
XF_RS01405	SM00862	Transcriptional regulatory protein, C terminal
XF_RS01410	SM00387	Histidine kinase-like ATPases
XF_RS01410	SM00388	His Kinase A (phosphoacceptor) domain
XF_RS01490	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
XF_RS01490	SM00954	Region found in RelA / SpoT proteins
XF_RS01500	SM00487	DEAD-like helicases superfamily
XF_RS01500	SM00490	helicase superfamily c-terminal domain
XF_RS01570	SM00965	Secretin and TonB N terminus short domain
XF_RS01600	SM00382	ATPases associated with a variety of cellular activities
XF_RS01600	SM01086	C-terminal, D2-small domain, of ClpB protein
XF_RS01630	SM00448	cheY-homologous receiver domain
XF_RS01630	SM00862	Transcriptional regulatory protein, C terminal
XF_RS01635	SM00387	Histidine kinase-like ATPases
XF_RS01675	SM00052	Putative diguanylate phosphodiesterase
XF_RS01675	SM00448	cheY-homologous receiver domain
XF_RS01715	SM00382	ATPases associated with a variety of cellular activities
XF_RS01755	SM00382	ATPases associated with a variety of cellular activities
XF_RS01785	SM00400	zinc finger
XF_RS01785	SM00493	XF_RS01785
XF_RS01785	SM00766	DNA primase DnaG DnaB-binding
XF_RS01810	SM00905	Dihydroneopterin aldolase
XF_RS01820	SM01217	XF_RS01820
XF_RS01850	SM00528	Domain in histone-like proteins of HNS family
XF_RS01860	SM00448	cheY-homologous receiver domain
XF_RS01865	SM00829	Enoylreductase
XF_RS01870	SM00244	prohibitin homologues
XF_RS01875	SM00244	prohibitin homologues
XF_RS01885	SM00788	Adenylosuccinate synthetase
XF_RS01890	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
XF_RS01895	SM00562	XF_RS01895
XF_RS01905	SM00028	Tetratricopeptide repeats
XF_RS01920	SM00564	beta-propeller repeat
XF_RS01925	SM00382	ATPases associated with a variety of cellular activities
XF_RS01930	SM00450	Rhodanese Homology Domain
XF_RS01940	SM00052	Putative diguanylate phosphodiesterase
XF_RS02105	SM00400	zinc finger
XF_RS02255	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS02455	SM00382	ATPases associated with a variety of cellular activities
XF_RS02495	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
XF_RS02520	SM00116	Domain in cystathionine beta-synthase and other proteins.
XF_RS02575	SM00883	Chaperonin 10 Kd subunit
XF_RS02695	SM00478	endonuclease III
XF_RS02695	SM00525	XF_RS02695
XF_RS02700	SM01160	XF_RS02700
XF_RS02735	SM00098	Alkaline phosphatase homologues
XF_RS02740	SM00977	TilS substrate C-terminal domain
XF_RS02785	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
XF_RS02790	SM00822	XF_RS02790
XF_RS02800	SM00825	Beta-ketoacyl synthase
XF_RS02840	SM00487	DEAD-like helicases superfamily
XF_RS02850	SM00990	XF_RS02850
XF_RS02855	SM00482	DNA polymerase A domain
XF_RS02860	SM01040	BRO family, N-terminal domain
XF_RS02915	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS02955	SM01040	BRO family, N-terminal domain
XF_RS02960	SM00885	D5 N terminal like
XF_RS03045	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS03120	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
XF_RS03145	SM00873	B3/4 domain
XF_RS03145	SM00874	tRNA synthetase B5 domain
XF_RS03145	SM00896	Ferredoxin-fold anticodon binding domain
XF_RS03150	SM00411	bacterial (prokaryotic) histone like domain
XF_RS03155	SM00422	helix_turn_helix, mercury resistance
XF_RS03170	SM00528	Domain in histone-like proteins of HNS family
XF_RS03175	SM00474	3'-5' exonuclease
XF_RS03205	SM00646	XF_RS03205
XF_RS03210	SM00853	MutL C terminal dimerisation domain
XF_RS03210	SM01340	XF_RS03210
XF_RS03240	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
XF_RS03245	SM00849	Metallo-beta-lactamase superfamily
XF_RS03320	SM00869	Autotransporter beta-domain
XF_RS03410	SM00842	Cell division protein FtsA
XF_RS03415	SM00864	Tubulin/FtsZ family, GTPase domain
XF_RS03415	SM00865	Tubulin/FtsZ family, C-terminal domain
XF_RS03435	SM00957	SecA DEAD-like domain
XF_RS03435	SM00958	SecA preprotein cross-linking domain
XF_RS03460	SM00637	XF_RS03460
XF_RS03560	SM01149	XF_RS03560
XF_RS03570	SM00758	XF_RS03570
XF_RS03570	SM01217	XF_RS03570
XF_RS03585	SM00636	XF_RS03585
XF_RS03600	SM01005	Alanine racemase, C-terminal domain
XF_RS03605	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
XF_RS03605	SM00091	PAS domain
XF_RS03605	SM00387	Histidine kinase-like ATPases
XF_RS03605	SM00388	His Kinase A (phosphoacceptor) domain
XF_RS03615	SM00257	Lysin motif
XF_RS03685	SM00382	ATPases associated with a variety of cellular activities
XF_RS03685	SM00930	XF_RS03685
XF_RS03700	SM00947	Carbonic anhydrase
XF_RS03710	SM00491	XF_RS03710
XF_RS03855	SM00116	Domain in cystathionine beta-synthase and other proteins.
XF_RS03855	SM01091	Transporter associated domain
XF_RS03875	SM00729	Elongator protein 3, MiaB family, Radical SAM
XF_RS03915	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS03945	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
XF_RS03945	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
XF_RS03945	SM00493	XF_RS03945
XF_RS03965	SM00257	Lysin motif
XF_RS03995	SM00899	XF_RS03995
XF_RS04025	SM00363	S4 RNA-binding domain
XF_RS04045	SM00382	ATPases associated with a variety of cellular activities
XF_RS04120	SM01130	XF_RS04120
XF_RS04135	SM00487	DEAD-like helicases superfamily
XF_RS04135	SM00490	helicase superfamily c-terminal domain
XF_RS04160	SM00421	helix_turn_helix, Lux Regulon
XF_RS04160	SM00448	cheY-homologous receiver domain
XF_RS04165	SM00387	Histidine kinase-like ATPases
XF_RS04165	SM00388	His Kinase A (phosphoacceptor) domain
XF_RS04165	SM00448	cheY-homologous receiver domain
XF_RS04185	SM00919	Malic enzyme, NAD binding domain
XF_RS04185	SM01274	XF_RS04185
XF_RS04190	SM00387	Histidine kinase-like ATPases
XF_RS04220	SM00267	diguanylate cyclase
XF_RS04235	SM01234	XF_RS04235
XF_RS04260	SM00840	XF_RS04260
XF_RS04290	SM00859	Semialdehyde dehydrogenase, NAD binding domain
XF_RS04300	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
XF_RS04345	SM00529	Helix-turn-helix diphteria tox regulatory element
XF_RS04375	SM00869	Autotransporter beta-domain
XF_RS04385	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
XF_RS04390	SM00563	Phosphate acyltransferases
XF_RS04405	SM00996	S-adenosyl-L-homocysteine hydrolase
XF_RS04405	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
XF_RS04445	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
XF_RS04535	SM00382	ATPases associated with a variety of cellular activities
XF_RS04585	SM00382	ATPases associated with a variety of cellular activities
XF_RS04590	SM00849	Metallo-beta-lactamase superfamily
XF_RS04605	SM00382	ATPases associated with a variety of cellular activities
XF_RS04620	SM00855	Phosphoglycerate mutase family
XF_RS04625	SM00867	YceI-like domain 
XF_RS04630	SM00155	Phospholipase D. Active site motifs.
XF_RS04660	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
XF_RS04660	SM00474	3'-5' exonuclease
XF_RS04660	SM00475	5'-3' exonuclease
XF_RS04660	SM00482	DNA polymerase A domain
XF_RS04675	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
XF_RS04680	SM00851	MGS-like domain
XF_RS04680	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
XF_RS04700	SM00937	XF_RS04700
XF_RS04710	SM00448	cheY-homologous receiver domain
XF_RS04710	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
XF_RS04715	SM00073	Histidine Phosphotransfer domain
XF_RS04715	SM00387	Histidine kinase-like ATPases
XF_RS04715	SM00388	His Kinase A (phosphoacceptor) domain
XF_RS04715	SM00448	cheY-homologous receiver domain
XF_RS04765	SM00316	Ribosomal protein S1-like RNA-binding domain
XF_RS04825	SM00830	Chorismate mutase type II
XF_RS04835	SM00382	ATPases associated with a variety of cellular activities
XF_RS04870	SM01403	XF_RS04870
XF_RS04890	SM01382	XF_RS04890
XF_RS04890	SM01383	XF_RS04890
XF_RS04905	SM00322	K homology RNA-binding domain
XF_RS04925	SM01374	XF_RS04925
XF_RS04930	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
XF_RS04980	SM00363	S4 RNA-binding domain
XF_RS04980	SM01390	XF_RS04980
XF_RS04985	SM00662	RNA polymerases D
XF_RS05000	SM00382	ATPases associated with a variety of cellular activities
XF_RS05020	SM00984	UDP binding domain
XF_RS05045	SM00382	ATPases associated with a variety of cellular activities
XF_RS05045	SM00994	ClpX C4-type zinc finger
XF_RS05045	SM01086	C-terminal, D2-small domain, of ClpB protein
XF_RS05050	SM00382	ATPases associated with a variety of cellular activities
XF_RS05050	SM00464	Found in ATP-dependent protease La (LON)
XF_RS05055	SM00411	bacterial (prokaryotic) histone like domain
XF_RS05135	SM00155	Phospholipase D. Active site motifs.
XF_RS05155	SM00838	Elongation factor G C-terminus
XF_RS05175	SM00382	ATPases associated with a variety of cellular activities
XF_RS05185	SM00382	ATPases associated with a variety of cellular activities
XF_RS05205	SM00487	DEAD-like helicases superfamily
XF_RS05205	SM00490	helicase superfamily c-terminal domain
XF_RS05205	SM00847	Helicase associated domain (HA2)  Add an annotation
XF_RS05295	SM01359	XF_RS05295
XF_RS05295	SM01360	XF_RS05295
XF_RS05305	SM00342	helix_turn_helix, arabinose operon control protein
XF_RS05320	SM00479	XF_RS05320
XF_RS05350	SM00869	Autotransporter beta-domain
XF_RS05360	SM00637	XF_RS05360
XF_RS05365	SM00729	Elongator protein 3, MiaB family, Radical SAM
XF_RS05400	SM00116	Domain in cystathionine beta-synthase and other proteins.
XF_RS05400	SM01091	Transporter associated domain
XF_RS05420	SM00387	Histidine kinase-like ATPases
XF_RS05420	SM00433	TopoisomeraseII
XF_RS05440	SM01192	XF_RS05440
XF_RS05440	SM01193	XF_RS05440
XF_RS05460	SM00463	Small MutS-related domain
XF_RS05490	SM00382	ATPases associated with a variety of cellular activities
XF_RS05515	SM00268	Actin
XF_RS05545	SM00954	Region found in RelA / SpoT proteins
XF_RS05590	SM00478	endonuclease III
XF_RS05595	SM00867	YceI-like domain 
XF_RS05605	SM00867	YceI-like domain 
XF_RS05610	SM00387	Histidine kinase-like ATPases
XF_RS05610	SM00388	His Kinase A (phosphoacceptor) domain
XF_RS05610	SM00448	cheY-homologous receiver domain
XF_RS05675	SM00382	ATPases associated with a variety of cellular activities
XF_RS05690	SM00434	DNA Topoisomerase IV
XF_RS05695	SM00347	helix_turn_helix multiple antibiotic resistance protein
XF_RS05725	SM00849	Metallo-beta-lactamase superfamily
XF_RS05765	SM00859	Semialdehyde dehydrogenase, NAD binding domain
XF_RS05795	SM00382	ATPases associated with a variety of cellular activities
XF_RS05810	SM00341	Helicase and RNase D C-terminal
XF_RS05810	SM00487	DEAD-like helicases superfamily
XF_RS05810	SM00490	helicase superfamily c-terminal domain
XF_RS05810	SM00956	XF_RS05810
XF_RS05820	SM00382	ATPases associated with a variety of cellular activities
XF_RS05820	SM00487	DEAD-like helicases superfamily
XF_RS05820	SM00490	helicase superfamily c-terminal domain
XF_RS05820	SM00847	Helicase associated domain (HA2)  Add an annotation
XF_RS05930	SM00382	ATPases associated with a variety of cellular activities
XF_RS05950	SM00116	Domain in cystathionine beta-synthase and other proteins.
XF_RS05995	SM01211	XF_RS05995
XF_RS06080	SM00382	ATPases associated with a variety of cellular activities
XF_RS06080	SM01086	C-terminal, D2-small domain, of ClpB protein
XF_RS06085	SM00316	Ribosomal protein S1-like RNA-binding domain
XF_RS06105	SM00382	ATPases associated with a variety of cellular activities
XF_RS06105	SM00843	XF_RS06105
XF_RS06120	SM00382	ATPases associated with a variety of cellular activities
XF_RS06130	SM00387	Histidine kinase-like ATPases
XF_RS06130	SM00388	His Kinase A (phosphoacceptor) domain
XF_RS06130	SM00448	cheY-homologous receiver domain
XF_RS06170	SM00354	helix_turn _helix lactose operon repressor
XF_RS06220	SM00382	ATPases associated with a variety of cellular activities
XF_RS06235	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
XF_RS06265	SM00382	ATPases associated with a variety of cellular activities
XF_RS06265	SM01086	C-terminal, D2-small domain, of ClpB protein
XF_RS06280	SM01263	XF_RS06280
XF_RS06295	SM00347	helix_turn_helix multiple antibiotic resistance protein
XF_RS06300	SM00528	Domain in histone-like proteins of HNS family
XF_RS06305	SM00028	Tetratricopeptide repeats
XF_RS06345	SM01409	XF_RS06345
XF_RS06350	SM00072	Guanylate kinase homologues.
XF_RS06370	SM00729	Elongator protein 3, MiaB family, Radical SAM
XF_RS06410	SM00382	ATPases associated with a variety of cellular activities
XF_RS06520	SM00100	Cyclic nucleotide-monophosphate binding domain
XF_RS06520	SM00419	helix_turn_helix, cAMP Regulatory protein
XF_RS06555	SM00861	Transketolase, pyrimidine binding domain
XF_RS06560	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
XF_RS06805	SM00382	ATPases associated with a variety of cellular activities
XF_RS06820	SM00984	UDP binding domain
XF_RS06865	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
XF_RS06895	SM00448	cheY-homologous receiver domain
XF_RS06895	SM00850	LytTr DNA-binding domain
XF_RS06920	SM00382	ATPases associated with a variety of cellular activities
XF_RS06950	SM00825	Beta-ketoacyl synthase
XF_RS06960	SM00248	ankyrin repeats
XF_RS06980	SM01040	BRO family, N-terminal domain
XF_RS07080	SM01040	BRO family, N-terminal domain
XF_RS07270	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS07300	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS07310	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS07340	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
XF_RS07340	SM00534	ATPase domain of DNA mismatch repair MUTS family
XF_RS07365	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS07395	SM00829	Enoylreductase
XF_RS07425	SM00829	Enoylreductase
XF_RS07475	SM00822	XF_RS07475
XF_RS07485	SM00829	Enoylreductase
XF_RS07530	SM00953	XF_RS07530
XF_RS07775	SM00450	Rhodanese Homology Domain
XF_RS07810	SM00382	ATPases associated with a variety of cellular activities
XF_RS07820	SM00493	XF_RS07820
XF_RS07835	SM00460	Transglutaminase/protease-like homologues
XF_RS07870	SM00917	LeuA allosteric (dimerisation) domain
XF_RS07895	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
XF_RS07895	SM00245	tail specific protease
XF_RS07920	SM00833	Cobalamin synthesis protein cobW C-terminal domain
XF_RS07965	SM00867	YceI-like domain 
XF_RS07975	SM01230	XF_RS07975
XF_RS07980	SM00938	Nitrogen regulatory protein P-II
XF_RS07995	SM00382	ATPases associated with a variety of cellular activities
XF_RS07995	SM00448	cheY-homologous receiver domain
XF_RS08000	SM00387	Histidine kinase-like ATPases
XF_RS08000	SM00388	His Kinase A (phosphoacceptor) domain
XF_RS08015	SM00869	Autotransporter beta-domain
XF_RS08020	SM00245	tail specific protease
XF_RS08155	SM00855	Phosphoglycerate mutase family
XF_RS08190	SM00855	Phosphoglycerate mutase family
XF_RS08235	SM00382	ATPases associated with a variety of cellular activities
XF_RS08245	SM00278	Helix-hairpin-helix DNA-binding motif class 1
XF_RS08265	SM00478	endonuclease III
XF_RS08265	SM00525	XF_RS08265
XF_RS08270	SM00382	ATPases associated with a variety of cellular activities
XF_RS08270	SM00962	SRP54-type protein, GTPase domain
XF_RS08270	SM00963	SRP54-type protein, helical bundle domain
XF_RS08280	SM00507	HNH nucleases
XF_RS08395	SM00861	Transketolase, pyrimidine binding domain
XF_RS08420	SM00411	bacterial (prokaryotic) histone like domain
XF_RS08465	SM00073	Histidine Phosphotransfer domain
XF_RS08465	SM00260	Two component signalling adaptor domain
XF_RS08465	SM00387	Histidine kinase-like ATPases
XF_RS08465	SM00448	cheY-homologous receiver domain
XF_RS08465	SM01231	XF_RS08465
XF_RS08470	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
XF_RS08475	SM00260	Two component signalling adaptor domain
XF_RS08480	SM00448	cheY-homologous receiver domain
XF_RS08560	SM00798	AICARFT/IMPCHase bienzyme
XF_RS08560	SM00851	MGS-like domain
XF_RS08565	SM01209	XF_RS08565
XF_RS08565	SM01210	XF_RS08565
XF_RS08600	SM00967	RNA 2'-O ribose methyltransferase substrate binding
XF_RS08645	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS08695	SM01011	Aminopeptidase P, N-terminal domain
XF_RS08750	SM00479	XF_RS08750
XF_RS08765	SM00493	XF_RS08765
XF_RS08775	SM00857	Resolvase, N terminal domain
XF_RS08935	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
XF_RS08935	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
XF_RS08935	SM00493	XF_RS08935
XF_RS08945	SM00493	XF_RS08945
XF_RS09125	SM01228	XF_RS09125
XF_RS09145	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS09215	SM00400	zinc finger
XF_RS09250	SM00382	ATPases associated with a variety of cellular activities
XF_RS09295	SM00382	ATPases associated with a variety of cellular activities
XF_RS09305	SM00479	XF_RS09305
XF_RS09310	SM00650	Ribosomal RNA adenine dimethylases
XF_RS09350	SM00331	Sigma factor PP2C-like phosphatases
XF_RS09350	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
XF_RS09355	SM00479	XF_RS09355
XF_RS09370	SM00849	Metallo-beta-lactamase superfamily
XF_RS09375	SM00316	Ribosomal protein S1-like RNA-binding domain
XF_RS09375	SM00732	Likely ribonuclease with RNase H fold.
XF_RS09380	SM00028	Tetratricopeptide repeats
XF_RS09585	SM00841	Elongation factor P, C-terminal
XF_RS09585	SM01185	XF_RS09585
XF_RS09610	SM01007	Class II Aldolase and Adducin N-terminal domain
XF_RS09695	SM00732	Likely ribonuclease with RNase H fold.
XF_RS09705	SM00936	Penicillin-binding protein 5, C-terminal domain 
XF_RS09720	SM00271	DnaJ molecular chaperone homology domain
XF_RS09755	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
XF_RS09760	SM00838	Elongation factor G C-terminus
XF_RS09775	SM00358	Double-stranded RNA binding motif
XF_RS09775	SM00535	Ribonuclease III family
XF_RS09790	SM00861	Transketolase, pyrimidine binding domain
XF_RS09820	SM00564	beta-propeller repeat
XF_RS09885	SM01259	XF_RS09885
XF_RS09900	SM00470	ParB-like nuclease domain
XF_RS09910	SM00849	Metallo-beta-lactamase superfamily
XF_RS09940	SM00990	XF_RS09940
XF_RS09955	SM00487	DEAD-like helicases superfamily
XF_RS09965	SM00226	Low molecular weight phosphatase family
XF_RS10000	SM01004	Delta-aminolevulinic acid dehydratase
XF_RS10025	SM00278	Helix-hairpin-helix DNA-binding motif class 1
XF_RS10025	SM00465	GIY-YIG type nucleases (URI domain)
XF_RS10085	SM00830	Chorismate mutase type II
XF_RS10105	SM00382	ATPases associated with a variety of cellular activities
XF_RS10135	SM00448	cheY-homologous receiver domain
XF_RS10135	SM00862	Transcriptional regulatory protein, C terminal
XF_RS10145	SM00271	DnaJ molecular chaperone homology domain
XF_RS10195	SM00869	Autotransporter beta-domain
XF_RS10220	SM01118	XF_RS10220
XF_RS10230	SM00448	cheY-homologous receiver domain
XF_RS10285	SM01329	XF_RS10285
XF_RS10335	SM00829	Enoylreductase
XF_RS10350	SM00450	Rhodanese Homology Domain
XF_RS10365	SM00382	ATPases associated with a variety of cellular activities
XF_RS10460	SM00904	Riboflavin kinase
XF_RS10510	SM00116	Domain in cystathionine beta-synthase and other proteins.
XF_RS10510	SM01240	XF_RS10510
XF_RS10535	SM00028	Tetratricopeptide repeats
XF_RS10545	SM00411	bacterial (prokaryotic) histone like domain
XF_RS10550	SM00316	Ribosomal protein S1-like RNA-binding domain
XF_RS10620	SM00363	S4 RNA-binding domain
XF_RS10630	SM00382	ATPases associated with a variety of cellular activities
XF_RS10705	SM00841	Elongation factor P, C-terminal
XF_RS10705	SM01185	XF_RS10705
XF_RS10795	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS10875	SM00885	D5 N terminal like
XF_RS10915	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS10990	SM00482	DNA polymerase A domain
XF_RS10995	SM00990	XF_RS10995
XF_RS11005	SM00487	DEAD-like helicases superfamily
XF_RS11030	SM00448	cheY-homologous receiver domain
XF_RS11030	SM00862	Transcriptional regulatory protein, C terminal
XF_RS11035	SM00387	Histidine kinase-like ATPases
XF_RS11035	SM00388	His Kinase A (phosphoacceptor) domain
XF_RS11080	SM00382	ATPases associated with a variety of cellular activities
XF_RS11080	SM00448	cheY-homologous receiver domain
XF_RS11085	SM00387	Histidine kinase-like ATPases
XF_RS11085	SM00388	His Kinase A (phosphoacceptor) domain
XF_RS11095	SM00881	CoA binding domain
XF_RS11115	SM00434	DNA Topoisomerase IV
XF_RS11140	SM00292	breast cancer carboxy-terminal domain
XF_RS11140	SM00532	Ligase N family
XF_RS11145	SM00771	ZipA, C-terminal domain (FtsZ-binding)
XF_RS11150	SM00968	SMC proteins Flexible Hinge Domain
XF_RS11185	SM00382	ATPases associated with a variety of cellular activities
XF_RS11230	SM00387	Histidine kinase-like ATPases
XF_RS11235	SM00448	cheY-homologous receiver domain
XF_RS11255	SM00382	ATPases associated with a variety of cellular activities
XF_RS11285	SM00387	Histidine kinase-like ATPases
XF_RS11285	SM00388	His Kinase A (phosphoacceptor) domain
XF_RS11290	SM00448	cheY-homologous receiver domain
XF_RS11290	SM00862	Transcriptional regulatory protein, C terminal
XF_RS11305	SM01329	XF_RS11305
XF_RS11350	SM00363	S4 RNA-binding domain
XF_RS11355	SM00316	Ribosomal protein S1-like RNA-binding domain
XF_RS11360	SM00421	helix_turn_helix, Lux Regulon
XF_RS11360	SM00448	cheY-homologous receiver domain
XF_RS11365	SM00450	Rhodanese Homology Domain
XF_RS11370	SM00448	cheY-homologous receiver domain
XF_RS11390	SM00382	ATPases associated with a variety of cellular activities
XF_RS11400	SM00357	Cold shock protein domain
XF_RS11405	SM00052	Putative diguanylate phosphodiesterase
XF_RS11405	SM00091	PAS domain
XF_RS11405	SM00267	diguanylate cyclase
XF_RS11420	SM00838	Elongation factor G C-terminus
XF_RS11420	SM00889	Elongation factor G, domain IV
XF_RS11435	SM00663	RNA polymerase I subunit A N-terminus
XF_RS11460	SM00649	Ribosomal protein L11/L12
XF_RS11465	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
XF_RS11465	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
XF_RS11515	SM01400	XF_RS11515
XF_RS11535	SM00028	Tetratricopeptide repeats
XF_RS11545	SM00937	XF_RS11545
XF_RS11550	SM00981	XF_RS11550
XF_RS11560	SM00644	XF_RS11560
XF_RS11605	SM01001	AIR carboxylase
XF_RS11665	SM00487	DEAD-like helicases superfamily
XF_RS11665	SM00490	helicase superfamily c-terminal domain
XF_RS11675	SM00986	Uracil DNA glycosylase superfamily
XF_RS11675	SM00987	UreE urease accessory protein, C-terminal domain 
XF_RS11680	SM00448	cheY-homologous receiver domain
XF_RS11690	SM00382	ATPases associated with a variety of cellular activities
XF_RS11695	SM00487	DEAD-like helicases superfamily
XF_RS11695	SM00490	helicase superfamily c-terminal domain
XF_RS11705	SM00357	Cold shock protein domain
XF_RS11705	SM00382	ATPases associated with a variety of cellular activities
XF_RS11705	SM00959	Rho termination factor, N-terminal domain
XF_RS11720	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
XF_RS11720	SM00245	tail specific protease
XF_RS11795	SM00487	DEAD-like helicases superfamily
XF_RS11815	SM00487	DEAD-like helicases superfamily
XF_RS11875	SM00487	DEAD-like helicases superfamily
XF_RS12410	SM01058	CarD-like/TRCF domain
XF_RS12475	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS12560	SM00530	Helix-turn-helix XRE-family like proteins 
XF_RS12575	SM01252	XF_RS12575
XF_RS12585	SM01040	BRO family, N-terminal domain
XF_RS12595	SM01040	BRO family, N-terminal domain
