locus-tag	class	description
XFFB_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
XFFB_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
XFFB_RS00025	COG0187	DNA topoisomerase II activity
XFFB_RS00035	COG0501	Belongs to the peptidase M48B family
XFFB_RS00075	COG0408	coproporphyrinogen oxidase activity
XFFB_RS00100	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
XFFB_RS00115	COG4969	Belongs to the N-Me-Phe pilin family
XFFB_RS00145	COG0284	orotidine-5'-phosphate decarboxylase activity
XFFB_RS00195	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
XFFB_RS00205	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
XFFB_RS00210	COG0511	ligase activity, forming carbon-carbon bonds
XFFB_RS00215	COG0439	Biotin carboxylase
XFFB_RS00220	COG0210	DNA helicase
XFFB_RS00230	COG1017	nitric oxide dioxygenase activity
XFFB_RS00230	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
XFFB_RS00245	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
XFFB_RS00255	COG1040	competence protein
XFFB_RS00260	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
XFFB_RS00265	COG1752	Esterase of the alpha-beta hydrolase superfamily
XFFB_RS00310	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
XFFB_RS00320	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
XFFB_RS00355	COG3121	Chaperone
XFFB_RS00360	COG3539	Fimbrial protein
XFFB_RS00365	COG1546	Belongs to the CinA family
XFFB_RS00370	COG0477	Major facilitator Superfamily
XFFB_RS00375	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
XFFB_RS00380	COG1923	regulation of RNA biosynthetic process
XFFB_RS00385	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
XFFB_RS00390	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
XFFB_RS00410	COG1534	Rna-binding protein
XFFB_RS00420	COG0129	dihydroxy-acid dehydratase activity
XFFB_RS00445	COG1560	Kdo2-lipid A biosynthetic process
XFFB_RS00450	COG1519	Transferase
XFFB_RS00460	COG0228	four-way junction DNA binding
XFFB_RS00465	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
XFFB_RS00470	COG0336	Belongs to the RNA methyltransferase TrmD family
XFFB_RS00475	COG0335	large ribosomal subunit rRNA binding
XFFB_RS00495	COG2171	N-acyltransferase activity
XFFB_RS00500	COG1393	Belongs to the ArsC family
XFFB_RS00505	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
XFFB_RS00510	COG0367	asparagine synthase
XFFB_RS00520	COG2070	2-Nitropropane dioxygenase
XFFB_RS00525	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
XFFB_RS00530	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
XFFB_RS00550	COG0339	signal peptide processing
XFFB_RS00565	COG2132	Multicopper oxidase
XFFB_RS00595	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
XFFB_RS00615	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
XFFB_RS00625	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
XFFB_RS00630	COG1166	arginine decarboxylase activity
XFFB_RS00635	COG4221	oxidoreductase activity
XFFB_RS00645	COG0018	arginyl-trna synthetase
XFFB_RS00650	COG2003	Belongs to the UPF0758 family
XFFB_RS00655	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
XFFB_RS00665	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
XFFB_RS00675	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
XFFB_RS00720	COG2223	nitrite transmembrane transporter activity
XFFB_RS00730	COG0739	heme binding
XFFB_RS00735	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
XFFB_RS00765	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
XFFB_RS00780	COG1028	Short-chain dehydrogenase reductase Sdr
XFFB_RS00785	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
XFFB_RS00790	COG1272	protein, Hemolysin III
XFFB_RS00795	COG0463	Glycosyl transferase, family 2
XFFB_RS00800	COG0084	hydrolase, TatD family'
XFFB_RS00815	COG0509	glycine decarboxylation via glycine cleavage system
XFFB_RS00820	COG0404	The glycine cleavage system catalyzes the degradation of glycine
XFFB_RS00830	COG0330	HflC and HflK could
XFFB_RS00835	COG3956	TIGRFAM MazG family protein
XFFB_RS00840	COG1218	3'(2'),5'-bisphosphate nucleotidase
XFFB_RS00845	COG0494	nUDIX hydrolase
XFFB_RS00855	COG1385	rRNA (uridine-N3-)-methyltransferase activity
XFFB_RS00865	COG0513	Belongs to the DEAD box helicase family
XFFB_RS00870	COG0720	synthase
XFFB_RS00910	COG0825	malonyl-CoA metabolic process
XFFB_RS00915	COG0587	DNA-directed DNA polymerase activity
XFFB_RS00920	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
XFFB_RS00945	COG0512	Glutamine amidotransferase of anthranilate synthase
XFFB_RS00950	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
XFFB_RS00955	COG0134	indole-3-glycerol-phosphate synthase activity
XFFB_RS00980	COG0006	proline dipeptidase activity
XFFB_RS00995	COG0343	queuine tRNA-ribosyltransferase activity
XFFB_RS01005	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
XFFB_RS01020	COG0617	tRNA 3'-terminal CCA addition
XFFB_RS01030	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
XFFB_RS01060	COG0779	Required for maturation of 30S ribosomal subunits
XFFB_RS01065	COG0195	Participates in both transcription termination and antitermination
XFFB_RS01070	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
XFFB_RS01075	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
XFFB_RS01090	COG1185	polyribonucleotide nucleotidyltransferase activity
XFFB_RS01095	COG1733	regulation of RNA biosynthetic process
XFFB_RS01100	COG0702	epimerase
XFFB_RS01160	COG2086	electron transfer activity
XFFB_RS01190	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
XFFB_RS01230	COG0477	Major facilitator Superfamily
XFFB_RS01245	COG0563	adenylate kinase activity
XFFB_RS01250	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
XFFB_RS01255	COG0671	phosphoesterase, PA-phosphatase related
XFFB_RS01265	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
XFFB_RS01270	COG0628	permease
XFFB_RS01290	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
XFFB_RS01295	COG1090	epimerase
XFFB_RS01325	COG1049	propionate catabolic process, 2-methylcitrate cycle
XFFB_RS01395	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
XFFB_RS01405	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
XFFB_RS01415	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
XFFB_RS01425	COG1034	ATP synthesis coupled electron transport
XFFB_RS01445	COG0713	ATP synthesis coupled electron transport
XFFB_RS01460	COG1007	ATP synthesis coupled electron transport
XFFB_RS01465	COG1028	Short-chain dehydrogenase reductase Sdr
XFFB_RS01470	COG2851	Citrate transporter
XFFB_RS01545	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
XFFB_RS01555	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
XFFB_RS01575	COG0277	FAD linked oxidase domain protein
XFFB_RS01580	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
XFFB_RS01590	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
XFFB_RS01595	COG2124	cytochrome p450
XFFB_RS01625	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
XFFB_RS01630	COG0667	Aldo Keto reductase
XFFB_RS01635	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
XFFB_RS01670	COG2194	sulfuric ester hydrolase activity
XFFB_RS01675	COG2124	cytochrome p450
XFFB_RS01680	COG0352	thiamine-phosphate diphosphorylase activity
XFFB_RS01720	COG0745	RESPONSE REGULATOR receiver
XFFB_RS01725	COG2205	protein histidine kinase activity
XFFB_RS01730	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
XFFB_RS01745	COG0494	nUDIX hydrolase
XFFB_RS01755	COG2193	ferroxidase activity
XFFB_RS01810	COG0861	Integral membrane protein TerC family
XFFB_RS01815	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
XFFB_RS01820	COG0531	amino acid
XFFB_RS01830	COG1116	anion transmembrane transporter activity
XFFB_RS01835	COG1322	Protein conserved in bacteria
XFFB_RS01845	COG2853	Lipoprotein
XFFB_RS01860	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
XFFB_RS01865	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
XFFB_RS01870	COG1127	ABC transporter
XFFB_RS01900	COG0358	DNA primase activity
XFFB_RS01910	COG1610	YqeY-like protein
XFFB_RS01920	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
XFFB_RS01925	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
XFFB_RS01930	COG0668	transmembrane transport
XFFB_RS01950	COG1183	phosphatidylcholine synthase activity
XFFB_RS01960	COG0442	prolyl-tRNA aminoacylation
XFFB_RS01980	COG0604	alcohol dehydrogenase
XFFB_RS01990	COG0330	HflC and HflK could
XFFB_RS02000	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
XFFB_RS02005	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
XFFB_RS02010	COG0105	UTP biosynthetic process
XFFB_RS02015	COG0820	rRNA (adenine-C2-)-methyltransferase activity
XFFB_RS02035	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XFFB_RS02040	COG1160	GTP binding
XFFB_RS02045	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
XFFB_RS02055	COG4943	cyclic-guanylate-specific phosphodiesterase activity
XFFB_RS02065	COG4968	Prepilin-type N-terminal cleavage methylation domain
XFFB_RS02110	COG0629	single-stranded DNA binding
XFFB_RS02135	COG4969	Belongs to the N-Me-Phe pilin family
XFFB_RS02250	COG3772	lysozyme
XFFB_RS02300	COG5449	Phage conserved hypothetical protein BR0599
XFFB_RS02410	COG2878	Part of a membrane complex involved in electron transport
XFFB_RS02415	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
XFFB_RS02415	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
XFFB_RS02425	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
XFFB_RS02430	COG3107	peptidoglycan biosynthetic process
XFFB_RS02435	COG0792	nuclease activity
XFFB_RS02440	COG1162	GTPase activity
XFFB_RS02445	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
XFFB_RS02460	COG0518	GMP synthase (glutamine-hydrolyzing) activity
XFFB_RS02460	COG0519	Catalyzes the synthesis of GMP from XMP
XFFB_RS02480	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
XFFB_RS02490	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
XFFB_RS02500	COG2974	May be involved in recombination
XFFB_RS02505	COG0037	tRNA processing
XFFB_RS02515	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
XFFB_RS02535	COG3590	peptidase
XFFB_RS02565	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
XFFB_RS02575	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
XFFB_RS02585	COG0628	permease
XFFB_RS02595	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
XFFB_RS02600	COG3178	'Phosphotransferase
XFFB_RS02605	COG1555	photosystem II stabilization
XFFB_RS02610	COG1477	protein flavinylation
XFFB_RS02630	COG3128	pkhd-type hydroxylase
XFFB_RS02635	COG4774	siderophore transport
XFFB_RS02655	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
XFFB_RS02670	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
XFFB_RS02680	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
XFFB_RS02715	COG1324	tolerance protein
XFFB_RS02725	COG0351	phosphomethylpyrimidine kinase
XFFB_RS02725	COG0352	thiamine-phosphate diphosphorylase activity
XFFB_RS02735	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
XFFB_RS02840	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
XFFB_RS02855	COG2311	Membrane
XFFB_RS02865	COG0791	NLP P60 protein
XFFB_RS02870	COG0791	NLP P60 protein
XFFB_RS02880	COG1301	dicarboxylic acid transport
XFFB_RS02890	COG0037	tRNA processing
XFFB_RS02895	COG1722	exodeoxyribonuclease VII activity
XFFB_RS02900	COG0142	geranyltranstransferase activity
XFFB_RS02955	COG1028	Short-chain dehydrogenase reductase Sdr
XFFB_RS02975	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
XFFB_RS03000	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
XFFB_RS03005	COG0483	inositol monophosphate 1-phosphatase activity
XFFB_RS03015	COG1509	lysine 2,3-aminomutase activity
XFFB_RS03025	COG0402	S-adenosylhomocysteine deaminase activity
XFFB_RS03030	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
XFFB_RS03035	COG0546	phosphoglycolate phosphatase activity
XFFB_RS03075	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
XFFB_RS03080	COG1138	Cytochrome C-type biogenesis protein
XFFB_RS03085	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
XFFB_RS03105	COG4133	protoheme IX ABC transporter activity
XFFB_RS03125	COG1187	pseudouridine synthase activity
XFFB_RS03130	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
XFFB_RS03135	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
XFFB_RS03160	COG1175	transmembrane transport
XFFB_RS03165	COG0395	ABC-type sugar transport system, permease component
XFFB_RS03200	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
XFFB_RS03210	COG0776	regulation of translation
XFFB_RS03220	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
XFFB_RS03235	COG1210	Utp--glucose-1-phosphate uridylyltransferase
XFFB_RS03240	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
XFFB_RS03250	COG0519	Catalyzes the synthesis of GMP from XMP
XFFB_RS03250	COG0518	GMP synthase (glutamine-hydrolyzing) activity
XFFB_RS03270	COG0261	This protein binds to 23S rRNA in the presence of protein L20
XFFB_RS03275	COG0211	Belongs to the bacterial ribosomal protein bL27 family
XFFB_RS03280	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
XFFB_RS03285	COG0268	Binds directly to 16S ribosomal RNA
XFFB_RS03290	COG0728	peptidoglycan biosynthetic process
XFFB_RS03295	COG0196	riboflavin kinase activity
XFFB_RS03305	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
XFFB_RS03340	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
XFFB_RS03340	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
XFFB_RS03400	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
XFFB_RS03420	COG1064	alcohol dehydrogenase
XFFB_RS03435	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XFFB_RS03440	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XFFB_RS03465	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
XFFB_RS03470	COG0066	3-isopropylmalate dehydratase activity
XFFB_RS03475	COG0473	3-isopropylmalate dehydrogenase activity
XFFB_RS03505	COG0438	transferase activity, transferring glycosyl groups
XFFB_RS03520	COG0438	transferase activity, transferring glycosyl groups
XFFB_RS03525	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
XFFB_RS03530	COG0745	RESPONSE REGULATOR receiver
XFFB_RS03540	COG2954	triphosphatase activity
XFFB_RS03555	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
XFFB_RS03560	COG1278	Cold shock
XFFB_RS03570	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
XFFB_RS03580	COG2914	Belongs to the UPF0125 (RnfH) family
XFFB_RS03585	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XFFB_RS03595	COG0497	DNA recombination
XFFB_RS03605	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
XFFB_RS03610	COG0443	Heat shock 70 kDa protein
XFFB_RS03615	COG0484	heat shock protein binding
XFFB_RS03620	COG0287	Prephenate dehydrogenase
XFFB_RS03620	COG1605	Chorismate mutase
XFFB_RS03640	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
XFFB_RS03645	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
XFFB_RS03650	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
XFFB_RS03665	COG4555	ABC transporter
XFFB_RS03670	COG1668	transmembrane transport
XFFB_RS03680	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
XFFB_RS03685	COG0077	Prephenate dehydratase
XFFB_RS03685	COG1605	Chorismate mutase
XFFB_RS03690	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
XFFB_RS03730	COG3772	lysozyme
XFFB_RS03745	COG0322	excinuclease ABC activity
XFFB_RS03750	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
XFFB_RS03795	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
XFFB_RS03800	COG0489	protein tyrosine kinase activity
XFFB_RS03805	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
XFFB_RS03810	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
XFFB_RS03865	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
XFFB_RS03875	COG1192	Involved in chromosome partitioning
XFFB_RS03880	COG1475	DNA binding
XFFB_RS03890	COG0463	Glycosyl transferase, family 2
XFFB_RS03900	COG0318	PFAM AMP-dependent synthetase and ligase
XFFB_RS03910	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
XFFB_RS03915	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
XFFB_RS03925	COG0676	glucose-6-phosphate 1-epimerase activity
XFFB_RS03935	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
XFFB_RS03955	COG1297	OPT oligopeptide transporter protein
XFFB_RS03960	COG1506	peptidase
XFFB_RS03960	COG0823	Involved in the tonB-independent uptake of proteins
XFFB_RS03965	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XFFB_RS03975	COG1971	Probably functions as a manganese efflux pump
XFFB_RS03980	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
XFFB_RS03995	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
XFFB_RS04000	COG1381	Involved in DNA repair and RecF pathway recombination
XFFB_RS04005	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
XFFB_RS04010	COG0571	ribonuclease III activity
XFFB_RS04025	COG0481	GTPase activity
XFFB_RS04030	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
XFFB_RS04075	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
XFFB_RS04085	COG1686	Belongs to the peptidase S11 family
XFFB_RS04095	COG1678	Uncharacterized ACR, COG1678
XFFB_RS04105	COG0540	Belongs to the ATCase OTCase family
XFFB_RS04110	COG0460	homoserine dehydrogenase
XFFB_RS04110	COG0527	aspartate kinase activity
XFFB_RS04115	COG0083	homoserine kinase activity
XFFB_RS04125	COG0124	histidyl-tRNA synthetase
XFFB_RS04135	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
XFFB_RS04150	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
XFFB_RS04150	COG0131	Imidazoleglycerol-phosphate dehydratase
XFFB_RS04160	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
XFFB_RS04170	COG0140	phosphoribosyl-ATP diphosphatase activity
XFFB_RS04170	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
XFFB_RS04175	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
XFFB_RS04180	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
XFFB_RS04185	COG0235	Class ii aldolase
XFFB_RS04190	COG0531	amino acid
XFFB_RS04195	COG0531	amino acid
XFFB_RS04200	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
XFFB_RS04205	COG0277	FAD linked oxidase domain protein
XFFB_RS04355	COG2026	Addiction module toxin, RelE StbE family
XFFB_RS04390	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
XFFB_RS04395	COG3657	addiction module killer protein
XFFB_RS04415	COG1131	(ABC) transporter
XFFB_RS04420	COG0386	Belongs to the glutathione peroxidase family
XFFB_RS04435	COG2900	Belongs to the SlyX family
XFFB_RS04450	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
XFFB_RS04460	COG2027	D-alanyl-D-alanine carboxypeptidase
XFFB_RS04475	COG2226	methyltransferase
XFFB_RS04500	COG3275	phosphorelay sensor kinase activity
XFFB_RS04510	COG0181	hydroxymethylbilane synthase activity
XFFB_RS04555	COG0463	Glycosyl transferase, family 2
XFFB_RS04565	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
XFFB_RS04580	COG0392	lysyltransferase activity
XFFB_RS04580	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
XFFB_RS04585	COG0251	oxidation-reduction process
XFFB_RS04600	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
XFFB_RS04605	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
XFFB_RS04610	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
XFFB_RS04615	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
XFFB_RS04625	COG0582	viral genome integration into host DNA
XFFB_RS04635	COG1396	sequence-specific DNA binding
XFFB_RS04645	COG0667	Aldo Keto reductase
XFFB_RS04650	COG0667	Aldo Keto reductase
XFFB_RS04655	COG1942	4-Oxalocrotonate Tautomerase
XFFB_RS04680	COG0583	DNA-binding transcription factor activity
XFFB_RS04685	COG1902	pentaerythritol trinitrate reductase activity
XFFB_RS04695	COG1064	alcohol dehydrogenase
XFFB_RS04725	COG2133	pyrroloquinoline quinone binding
XFFB_RS04735	COG3386	PFAM SMP-30 Gluconolaconase
XFFB_RS04745	COG4221	oxidoreductase activity
XFFB_RS04755	COG1064	alcohol dehydrogenase
XFFB_RS04945	COG0629	single-stranded DNA binding
XFFB_RS05035	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
XFFB_RS05040	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
XFFB_RS05040	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
XFFB_RS05065	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
XFFB_RS05085	COG0338	D12 class N6 adenine-specific DNA methyltransferase
XFFB_RS05105	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
XFFB_RS05110	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
XFFB_RS05115	COG0537	adenosine 5'-monophosphoramidase activity
XFFB_RS05135	COG0714	Associated with various cellular activities
XFFB_RS05145	COG1399	metal-binding, possibly nucleic acid-binding protein
XFFB_RS05150	COG0333	Belongs to the bacterial ribosomal protein bL32 family
XFFB_RS05155	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
XFFB_RS05160	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
XFFB_RS05180	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
XFFB_RS05190	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
XFFB_RS05195	COG1764	response to oxidative stress
XFFB_RS05200	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
XFFB_RS05225	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
XFFB_RS05235	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
XFFB_RS05250	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
XFFB_RS05260	COG0629	single-stranded DNA binding
XFFB_RS05380	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
XFFB_RS05405	COG3772	lysozyme
XFFB_RS05430	COG5410	chromosome segregation
XFFB_RS05440	COG2369	cell adhesion
XFFB_RS05515	COG2026	Addiction module toxin, RelE StbE family
XFFB_RS05550	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
XFFB_RS05555	COG3657	addiction module killer protein
XFFB_RS05615	COG2353	YceI-like domain
XFFB_RS05625	COG0174	glutamine synthetase
XFFB_RS05630	COG0347	Belongs to the P(II) protein family
XFFB_RS05635	COG0004	ammonium transporteR
XFFB_RS05650	COG2204	response regulator
XFFB_RS05655	COG3852	Histidine kinase
XFFB_RS05710	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
XFFB_RS05715	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
XFFB_RS05925	COG0406	alpha-ribazole phosphatase activity
XFFB_RS05935	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
XFFB_RS05945	COG0386	Belongs to the glutathione peroxidase family
XFFB_RS05950	COG3104	oligopeptide transport
XFFB_RS05955	COG1515	deoxyribonuclease V activity
XFFB_RS05960	COG0588	phosphoglycerate mutase activity
XFFB_RS05965	COG0602	queuosine metabolic process
XFFB_RS05975	COG2885	chlorophyll binding
XFFB_RS05980	COG0823	Involved in the tonB-independent uptake of proteins
XFFB_RS06000	COG0824	Thioesterase
XFFB_RS06005	COG2255	four-way junction helicase activity
XFFB_RS06010	COG3158	transport of potassium into the cell
XFFB_RS06015	COG0632	four-way junction helicase activity
XFFB_RS06020	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
XFFB_RS06025	COG0217	transcriptional regulatory protein
XFFB_RS06035	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
XFFB_RS06045	COG0552	protein localization to endoplasmic reticulum
XFFB_RS06060	COG0084	hydrolase, TatD family'
XFFB_RS06095	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
XFFB_RS06100	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
XFFB_RS06110	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
XFFB_RS06115	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
XFFB_RS06185	COG2091	lysine biosynthetic process via aminoadipic acid
XFFB_RS06190	COG0357	Ribosomal RNA small subunit methyltransferase G
XFFB_RS06195	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
XFFB_RS06200	COG1301	dicarboxylic acid transport
XFFB_RS06205	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
XFFB_RS06230	COG0339	signal peptide processing
XFFB_RS06240	COG0285	dihydrofolate synthase activity
XFFB_RS06270	COG0643	Histidine kinase
XFFB_RS06270	COG2198	Histidine kinase
XFFB_RS06270	COG0784	Response regulator, receiver
XFFB_RS06275	COG0840	transmembrane signaling receptor activity
XFFB_RS06290	COG0189	ligase activity
XFFB_RS06305	COG0751	glycine-tRNA ligase activity
XFFB_RS06310	COG0752	glycyl-tRNA synthetase alpha subunit
XFFB_RS06325	COG0727	PFAM Uncharacterised protein family (UPF0153)
XFFB_RS06350	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
XFFB_RS06360	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
XFFB_RS06375	COG0138	bifunctional purine biosynthesis protein purh
XFFB_RS06380	COG0151	Belongs to the GarS family
XFFB_RS06390	COG1289	transmembrane transporter activity
XFFB_RS06395	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
XFFB_RS06410	COG0302	gtp cyclohydrolase
XFFB_RS06415	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
XFFB_RS06420	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
XFFB_RS06440	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
XFFB_RS06445	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
XFFB_RS06480	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
XFFB_RS06485	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
XFFB_RS06530	COG0006	proline dipeptidase activity
XFFB_RS06535	COG3079	Belongs to the UPF0149 family
XFFB_RS06555	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
XFFB_RS06565	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
XFFB_RS06575	COG0025	NhaP-type Na H and K H
XFFB_RS06590	COG2925	Exonuclease
XFFB_RS06655	COG3609	addiction module antidote protein, CC2985 family
XFFB_RS06695	COG3041	Addiction module toxin RelE StbE family
XFFB_RS06700	COG3077	Addiction module antitoxin, RelB DinJ family
XFFB_RS06705	COG1028	Short-chain dehydrogenase reductase Sdr
XFFB_RS06710	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XFFB_RS06745	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
XFFB_RS06750	COG2902	Dehydrogenase
XFFB_RS06760	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XFFB_RS06765	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XFFB_RS06775	COG1469	GTP cyclohydrolase I activity
XFFB_RS06815	COG0445	tRNA wobble uridine modification
XFFB_RS06975	COG0488	(ABC) transporter
XFFB_RS06985	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
XFFB_RS07000	COG4651	solute:proton antiporter activity
XFFB_RS07000	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
XFFB_RS07005	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
XFFB_RS07010	COG0573	inorganic phosphate transmembrane transporter activity
XFFB_RS07015	COG0581	inorganic phosphate transmembrane transporter activity
XFFB_RS07020	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
XFFB_RS07025	COG0704	Plays a role in the regulation of phosphate uptake
XFFB_RS07030	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
XFFB_RS07035	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
XFFB_RS07040	COG2967	ApaG domain
XFFB_RS07045	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
XFFB_RS07060	COG3642	lipopolysaccharide core region biosynthetic process
XFFB_RS07065	COG0859	PFAM glycosyl transferase family 9
XFFB_RS07080	COG0631	protein serine/threonine phosphatase activity
XFFB_RS07085	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
XFFB_RS07090	COG0328	RNA-DNA hybrid ribonuclease activity
XFFB_RS07100	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
XFFB_RS07115	COG2183	response to ionizing radiation
XFFB_RS07130	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
XFFB_RS07140	COG3118	belongs to the thioredoxin family
XFFB_RS07150	COG0495	leucyl-tRNA aminoacylation
XFFB_RS07165	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
XFFB_RS07195	COG2951	lytic endotransglycosylase activity
XFFB_RS07290	COG0582	viral genome integration into host DNA
XFFB_RS07300	COG5410	chromosome segregation
XFFB_RS07325	COG3772	lysozyme
XFFB_RS07345	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
XFFB_RS07400	COG2850	peptidyl-arginine hydroxylation
XFFB_RS07405	COG0567	Dehydrogenase, E1 component
XFFB_RS07430	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
XFFB_RS07465	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
XFFB_RS07470	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
XFFB_RS07475	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
XFFB_RS07495	COG0583	DNA-binding transcription factor activity
XFFB_RS07500	COG3634	alkyl hydroperoxide reductase activity
XFFB_RS07520	COG1450	Type ii and iii secretion system protein
XFFB_RS07535	COG3166	PFAM Fimbrial assembly family protein
XFFB_RS07540	COG3156	type II secretion system protein K
XFFB_RS07545	COG4795	General secretion pathway protein
XFFB_RS07550	COG2165	general secretion pathway protein
XFFB_RS07555	COG4970	Tfp pilus assembly protein FimT
XFFB_RS07560	COG2165	general secretion pathway protein
XFFB_RS07565	COG1459	type II secretion system
XFFB_RS07570	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
XFFB_RS07575	COG5295	Hep Hag repeat protein
XFFB_RS07595	COG2890	protein-(glutamine-N5) methyltransferase activity
XFFB_RS07600	COG0596	Alpha beta hydrolase
XFFB_RS07615	COG0635	Involved in the biosynthesis of porphyrin-containing compound
XFFB_RS07620	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
XFFB_RS07630	COG1561	YicC-like family, N-terminal region
XFFB_RS07635	COG0194	GDP metabolic process
XFFB_RS07640	COG1758	RNA polymerase activity
XFFB_RS07650	COG0175	sulfate reduction
XFFB_RS07660	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
XFFB_RS07665	COG0175	sulfate reduction
XFFB_RS07680	COG2912	Transglutaminase-like superfamily
XFFB_RS07705	COG0308	aminopeptidase N
XFFB_RS07710	COG2226	methyltransferase
XFFB_RS07720	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
XFFB_RS07740	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
XFFB_RS07760	COG1959	2 iron, 2 sulfur cluster binding
XFFB_RS07765	COG0719	Fe-S assembly protein
XFFB_RS07770	COG0396	ATPase activity
XFFB_RS07780	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
XFFB_RS07795	COG0297	glycogen (starch) synthase activity
XFFB_RS07800	COG0726	polysaccharide deacetylase
XFFB_RS07805	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
XFFB_RS07810	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
XFFB_RS07815	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
XFFB_RS07820	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
XFFB_RS07825	COG1609	Transcriptional regulator
XFFB_RS07840	COG0837	glucose binding
XFFB_RS07855	COG1028	Short-chain dehydrogenase reductase Sdr
XFFB_RS07860	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
XFFB_RS07865	COG4191	Histidine kinase
XFFB_RS07870	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
XFFB_RS07875	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
XFFB_RS07880	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
XFFB_RS07890	COG1674	ftsk spoiiie
XFFB_RS07895	COG0492	ferredoxin-NADP+ reductase activity
XFFB_RS07905	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
XFFB_RS07910	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
XFFB_RS07920	COG0542	response to heat
XFFB_RS07925	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
XFFB_RS07940	COG2915	High frequency lysogenization protein hflD homolog
XFFB_RS07950	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
XFFB_RS07975	COG0218	Necessary for normal cell division and for the maintenance of normal septation
XFFB_RS07985	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
XFFB_RS07990	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
XFFB_RS07995	COG4974	Belongs to the 'phage' integrase family
XFFB_RS08000	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
XFFB_RS08045	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
XFFB_RS08050	COG0271	Belongs to the BolA IbaG family
XFFB_RS08060	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
XFFB_RS08075	COG1137	ATPase activity
XFFB_RS08095	COG1660	Displays ATPase and GTPase activities
XFFB_RS08105	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
XFFB_RS08110	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
XFFB_RS08130	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
XFFB_RS08140	COG0142	geranyltranstransferase activity
XFFB_RS08145	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
XFFB_RS08150	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
XFFB_RS08155	COG1845	cytochrome c oxidase, subunit III
XFFB_RS08160	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
XFFB_RS08165	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
XFFB_RS08165	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
XFFB_RS08185	COG0783	Belongs to the Dps family
XFFB_RS08190	COG0514	ATP-dependent DNA helicase (RecQ)
XFFB_RS08200	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
XFFB_RS08210	COG0159	tryptophan synthase activity
XFFB_RS08215	COG0133	tryptophan synthase activity
XFFB_RS08220	COG0135	phosphoribosylanthranilate isomerase activity
XFFB_RS08225	COG0101	tRNA pseudouridine synthase activity
XFFB_RS08235	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
XFFB_RS08245	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
XFFB_RS08250	COG2890	protein-(glutamine-N5) methyltransferase activity
XFFB_RS08260	COG0688	phosphatidylethanolamine metabolic process
XFFB_RS08270	COG0741	lytic transglycosylase activity
XFFB_RS08275	COG0617	tRNA 3'-terminal CCA addition
XFFB_RS08285	COG0109	protoheme IX farnesyltransferase activity
XFFB_RS08295	COG0156	8-amino-7-oxononanoate synthase activity
XFFB_RS08300	COG2267	carboxylic ester hydrolase activity
XFFB_RS08310	COG1846	Transcriptional regulator
XFFB_RS08320	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
XFFB_RS08330	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
XFFB_RS08335	COG4208	sulfate ABC transporter
XFFB_RS08340	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
XFFB_RS08365	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
XFFB_RS08370	COG0259	pyridoxamine-phosphate oxidase activity
XFFB_RS08380	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
XFFB_RS08385	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
XFFB_RS08395	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
XFFB_RS08405	COG2198	Histidine kinase
XFFB_RS08405	COG2205	protein histidine kinase activity
XFFB_RS08405	COG0784	Response regulator, receiver
XFFB_RS08410	COG2353	YceI-like domain
XFFB_RS08415	COG3038	cytochrome b561
XFFB_RS08425	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
XFFB_RS08445	COG0850	regulation of cytokinetic process
XFFB_RS08450	COG2894	cell division
XFFB_RS08470	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
XFFB_RS08475	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
XFFB_RS08480	COG0772	Belongs to the SEDS family
XFFB_RS08485	COG0768	penicillin binding
XFFB_RS08490	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
XFFB_RS08495	COG1792	Involved in formation and maintenance of cell shape
XFFB_RS08500	COG1077	Cell shape determining protein MreB Mrl
XFFB_RS08555	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
XFFB_RS08560	COG1127	ABC transporter
XFFB_RS08565	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
XFFB_RS08565	COG3218	ABC-type transport auxiliary lipoprotein component
XFFB_RS08580	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
XFFB_RS08580	COG0644	oxidoreductase
XFFB_RS08590	COG2840	Smr protein MutS2
XFFB_RS08595	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
XFFB_RS08600	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
XFFB_RS08605	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
XFFB_RS08610	COG0148	phosphopyruvate hydratase activity
XFFB_RS08615	COG2877	3-deoxy-8-phosphooctulonate synthase activity
XFFB_RS08620	COG0504	CTP synthase activity
XFFB_RS08650	COG1253	flavin adenine dinucleotide binding
XFFB_RS08655	COG2733	membrane
XFFB_RS08675	COG2921	Belongs to the UPF0250 family
XFFB_RS08680	COG0321	lipoyl(octanoyl) transferase activity
XFFB_RS08685	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
XFFB_RS08690	COG5297	Belongs to the glycosyl hydrolase family 6
XFFB_RS08710	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
XFFB_RS08720	COG0668	transmembrane transport
XFFB_RS08725	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
XFFB_RS08745	COG2373	Large extracellular alpha-helical protein
XFFB_RS08915	COG0582	viral genome integration into host DNA
XFFB_RS08930	COG2911	Protein conserved in bacteria
XFFB_RS08935	COG0729	surface antigen
XFFB_RS08940	COG1956	GAF domain-containing protein
XFFB_RS08945	COG1643	Atp-dependent helicase
XFFB_RS08970	COG1131	(ABC) transporter
XFFB_RS08975	COG0842	Transport permease protein
XFFB_RS09020	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
XFFB_RS09025	COG0039	L-malate dehydrogenase activity
XFFB_RS09030	COG0625	glutathione transferase activity
XFFB_RS09035	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
XFFB_RS09085	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
XFFB_RS09090	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
XFFB_RS09135	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
XFFB_RS09140	COG0740	serine-type endopeptidase activity
XFFB_RS09145	COG0544	peptidyl-prolyl cis-trans isomerase activity
XFFB_RS09160	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
XFFB_RS09170	COG5380	lipid catabolic process
XFFB_RS09180	COG0606	chelatase, subunit chli
XFFB_RS09185	COG2960	long-chain fatty acid transporting porin activity
XFFB_RS09190	COG0203	ribosomal protein L17
XFFB_RS09200	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
XFFB_RS09205	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
XFFB_RS09210	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
XFFB_RS09215	COG0201	protein transport
XFFB_RS09220	COG0200	Binds to the 23S rRNA
XFFB_RS09225	COG1841	ribosomal large subunit assembly
XFFB_RS09230	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
XFFB_RS09240	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
XFFB_RS09245	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
XFFB_RS09250	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
XFFB_RS09255	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
XFFB_RS09260	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
XFFB_RS09270	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
XFFB_RS09275	COG0255	Belongs to the universal ribosomal protein uL29 family
XFFB_RS09285	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
XFFB_RS09290	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
XFFB_RS09295	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
XFFB_RS09300	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
XFFB_RS09305	COG0089	rRNA binding
XFFB_RS09310	COG0088	Forms part of the polypeptide exit tunnel
XFFB_RS09315	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
XFFB_RS09330	COG0356	it plays a direct role in the translocation of protons across the membrane
XFFB_RS09340	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
XFFB_RS09345	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
XFFB_RS09350	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
XFFB_RS09355	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
XFFB_RS09360	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
XFFB_RS09365	COG0355	proton-transporting ATP synthase activity, rotational mechanism
XFFB_RS09375	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
XFFB_RS09390	COG1064	alcohol dehydrogenase
XFFB_RS09400	COG0655	NAD(P)H dehydrogenase (quinone) activity
XFFB_RS09405	COG0583	DNA-binding transcription factor activity
XFFB_RS09415	COG3028	Belongs to the UPF0307 family
XFFB_RS09420	COG0312	modulator of DNA gyrase
XFFB_RS09430	COG1530	ribonuclease E activity
XFFB_RS09435	COG0424	maF-like protein
XFFB_RS09450	COG0494	nUDIX hydrolase
XFFB_RS09470	COG0019	diaminopimelate decarboxylase activity
XFFB_RS09475	COG1024	Enoyl-CoA hydratase
XFFB_RS09500	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
XFFB_RS09510	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
XFFB_RS09520	COG0505	Belongs to the CarA family
XFFB_RS09525	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
XFFB_RS09560	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
XFFB_RS09590	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
XFFB_RS09610	COG1663	tetraacyldisaccharide 4'-kinase activity
XFFB_RS09615	COG1132	(ABC) transporter
XFFB_RS09625	COG0811	peptide transport
XFFB_RS09635	COG1136	(ABC) transporter
XFFB_RS09640	COG4591	ABC-type transport system involved in lipoprotein release permease component
XFFB_RS09650	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
XFFB_RS09655	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
XFFB_RS09665	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
XFFB_RS09670	COG2009	succinate dehydrogenase
XFFB_RS09680	COG0354	folic acid binding
XFFB_RS09685	COG3842	ATPase activity
XFFB_RS09690	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
XFFB_RS09695	COG0837	glucose binding
XFFB_RS09700	COG0363	glucosamine-6-phosphate deaminase activity
XFFB_RS09735	COG0528	UMP kinase activity
XFFB_RS09765	COG0233	cytoplasmic translational termination
XFFB_RS09770	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
XFFB_RS09775	COG0575	Belongs to the CDS family
XFFB_RS09780	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
XFFB_RS09785	COG0750	zinc metalloprotease
XFFB_RS09795	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XFFB_RS09800	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
XFFB_RS09805	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XFFB_RS09810	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XFFB_RS09815	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
XFFB_RS09825	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
XFFB_RS09875	COG1946	Acyl-CoA thioesterase
XFFB_RS09885	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
XFFB_RS09895	COG1914	H( )-stimulated, divalent metal cation uptake system
XFFB_RS09950	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
XFFB_RS09955	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
XFFB_RS09960	COG0165	Argininosuccinate lyase
XFFB_RS09970	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
XFFB_RS09980	COG0137	argininosuccinate synthase activity
XFFB_RS09985	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
XFFB_RS10005	COG2166	iron-sulfur cluster assembly
XFFB_RS10025	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
XFFB_RS10030	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
XFFB_RS10050	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
XFFB_RS10060	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
XFFB_RS10065	COG0742	ribosomal rna small subunit methyltransferase
XFFB_RS10070	COG0326	Molecular chaperone. Has ATPase activity
XFFB_RS10075	COG0280	phosphate acetyltransferase
XFFB_RS10075	COG0281	malic enzyme
XFFB_RS10080	COG1301	dicarboxylic acid transport
XFFB_RS10095	COG2205	protein histidine kinase activity
XFFB_RS10095	COG0784	Response regulator, receiver
XFFB_RS10265	COG3567	Phage-associated protein, HI1409 family
XFFB_RS10270	COG5410	chromosome segregation
XFFB_RS10295	COG3772	lysozyme
XFFB_RS10315	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
XFFB_RS10435	COG5532	Uncharacterized conserved protein (DUF2303)
XFFB_RS10455	COG3617	BRO family, N-terminal domain
XFFB_RS10480	COG0629	single-stranded DNA binding
XFFB_RS10500	COG0556	nucleotide-excision repair
XFFB_RS10525	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
XFFB_RS10550	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
XFFB_RS10555	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
XFFB_RS10570	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
XFFB_RS10570	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
XFFB_RS10575	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
XFFB_RS10585	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
XFFB_RS10590	COG0488	(ABC) transporter
XFFB_RS10595	COG0579	oxidoreductase
XFFB_RS10600	COG3011	Protein conserved in bacteria
XFFB_RS10610	COG0564	pseudouridine synthase activity
XFFB_RS10615	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XFFB_RS10635	COG1918	ferrous iron import across plasma membrane
XFFB_RS10635	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
XFFB_RS10645	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
XFFB_RS10655	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
XFFB_RS10670	COG0758	DNA mediated transformation
XFFB_RS10675	COG2922	Belongs to the Smg family
XFFB_RS10680	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
XFFB_RS10680	COG1754	DNA topoisomerase type I activity
XFFB_RS10685	COG0009	L-threonylcarbamoyladenylate synthase
XFFB_RS10720	COG2969	positive regulation of protein catabolic process
XFFB_RS10725	COG0625	glutathione transferase activity
XFFB_RS10730	COG2857	Cytochrome c1
XFFB_RS10735	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
XFFB_RS10740	COG0723	plastoquinol--plastocyanin reductase activity
XFFB_RS10750	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
XFFB_RS10755	COG1702	phosphate starvation-inducible protein PhoH
XFFB_RS10760	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
XFFB_RS10770	COG4535	Mg2 and Co2 transporter CorC
XFFB_RS10840	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
XFFB_RS10860	COG0288	reversible hydration of carbon dioxide
XFFB_RS10885	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
XFFB_RS10890	COG2011	ABC-type metal ion transport system permease component
XFFB_RS10895	COG1464	Belongs to the NlpA lipoprotein family
XFFB_RS10910	COG0508	dehydrogenase complex catalyzes the overall conversion of
XFFB_RS10915	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
XFFB_RS10930	COG0626	cystathionine gamma-synthase activity
XFFB_RS10935	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
XFFB_RS10940	COG0739	heme binding
XFFB_RS10960	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
XFFB_RS10965	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
XFFB_RS10970	COG1238	metal cluster binding
XFFB_RS10985	COG5002	protein histidine kinase activity
XFFB_RS10995	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
XFFB_RS11000	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
XFFB_RS11005	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
XFFB_RS11010	COG3858	chitin binding
XFFB_RS11010	COG1388	LysM domain
XFFB_RS11025	COG1472	Belongs to the glycosyl hydrolase 3 family
XFFB_RS11050	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
XFFB_RS11055	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
XFFB_RS11075	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
XFFB_RS11080	COG0583	DNA-binding transcription factor activity
XFFB_RS11110	COG3588	fructose-bisphosphate aldolase
XFFB_RS11120	COG0469	pyruvate kinase activity
XFFB_RS11130	COG0126	phosphoglycerate kinase activity
XFFB_RS11135	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
XFFB_RS11140	COG0735	belongs to the Fur family
XFFB_RS11160	COG0612	Peptidase, M16
XFFB_RS11180	COG0653	protein targeting
XFFB_RS11185	COG0739	heme binding
XFFB_RS11195	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
XFFB_RS11205	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
XFFB_RS11215	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
XFFB_RS11220	COG1181	Belongs to the D-alanine--D-alanine ligase family
XFFB_RS11225	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
XFFB_RS11230	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
XFFB_RS11240	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
XFFB_RS11245	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
XFFB_RS11250	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
XFFB_RS11260	COG3116	cell division
XFFB_RS11265	COG0275	rRNA processing
XFFB_RS11270	COG2001	Belongs to the MraZ family
XFFB_RS11285	COG3273	potassium ion transport
XFFB_RS11285	COG0471	metal ion transport
XFFB_RS11290	COG0220	tRNA (guanine-N7-)-methyltransferase activity
XFFB_RS11295	COG2022	thiamine diphosphate biosynthetic process
XFFB_RS11325	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
XFFB_RS11325	COG2755	lipolytic protein G-D-S-L family
XFFB_RS11350	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
XFFB_RS11375	COG3453	Protein conserved in bacteria
XFFB_RS11375	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
XFFB_RS11380	COG0640	Transcriptional regulator
XFFB_RS11385	COG2391	methyltransferase activity
XFFB_RS11390	COG2391	methyltransferase activity
XFFB_RS11395	COG0730	response to heat
XFFB_RS11400	COG0717	Belongs to the dCTP deaminase family
XFFB_RS11410	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
XFFB_RS11420	COG0802	atpase or kinase
XFFB_RS11435	COG1570	exodeoxyribonuclease VII activity
XFFB_RS11460	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
XFFB_RS11480	COG0776	regulation of translation
XFFB_RS11485	COG0072	phenylalanine-tRNA ligase activity
XFFB_RS11485	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
XFFB_RS11490	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
XFFB_RS11495	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
XFFB_RS11505	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
XFFB_RS11510	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
XFFB_RS11580	COG2944	sequence-specific DNA binding
XFFB_RS11805	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
XFFB_RS11825	COG0745	RESPONSE REGULATOR receiver
XFFB_RS11830	COG0642	Histidine kinase
XFFB_RS11840	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
XFFB_RS11885	COG0045	succinate-CoA ligase (ADP-forming) activity
XFFB_RS11890	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
XFFB_RS11900	COG2831	hemolysin activation secretion protein
XFFB_RS11915	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
XFFB_RS11925	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
XFFB_RS11935	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
XFFB_RS11940	COG3115	cell septum assembly
XFFB_RS11950	COG0359	binds to the 23S rRNA
XFFB_RS11955	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
XFFB_RS11965	COG0316	Belongs to the HesB IscA family
XFFB_RS11970	COG0017	Asparaginyl-tRNA synthetase
XFFB_RS12000	COG0812	UDP-N-acetylmuramate dehydrogenase activity
XFFB_RS12005	COG0697	spore germination
XFFB_RS12015	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
XFFB_RS12030	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
XFFB_RS12035	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
XFFB_RS12050	COG1132	(ABC) transporter
XFFB_RS12060	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
XFFB_RS12065	COG1538	Outer membrane efflux protein
XFFB_RS12070	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XFFB_RS12085	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
XFFB_RS12100	COG4783	chaperone-mediated protein folding
XFFB_RS12110	COG0473	3-isopropylmalate dehydrogenase activity
XFFB_RS12120	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
XFFB_RS12130	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
XFFB_RS12140	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
XFFB_RS12140	COG0316	Belongs to the HesB IscA family
XFFB_RS12145	COG2154	pterin-4-alpha-carbinolamine dehydratase
XFFB_RS12160	COG1530	ribonuclease E activity
XFFB_RS12165	COG2197	response regulator
XFFB_RS12185	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
XFFB_RS12210	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
XFFB_RS12215	COG1278	Cold shock
XFFB_RS12225	COG0501	Belongs to the peptidase M48B family
XFFB_RS12235	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
XFFB_RS12240	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
XFFB_RS12245	COG0049	tRNA binding
XFFB_RS12255	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
XFFB_RS12260	COG0085	RNA polymerase activity
XFFB_RS12265	COG0222	ribosome binding
XFFB_RS12270	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
XFFB_RS12275	COG0081	regulation of translation
XFFB_RS12280	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
XFFB_RS12285	COG0250	Participates in transcription elongation, termination and antitermination
XFFB_RS12290	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
XFFB_RS12300	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
XFFB_RS12320	COG0012	GTP binding
XFFB_RS12325	COG0193	aminoacyl-tRNA hydrolase activity
XFFB_RS12345	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
XFFB_RS12350	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
XFFB_RS12360	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
XFFB_RS12365	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
XFFB_RS12425	COG2095	MarC family integral membrane protein
XFFB_RS12430	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
XFFB_RS12445	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
XFFB_RS12460	COG2132	Multicopper oxidase
XFFB_RS12470	COG0210	DNA helicase
XFFB_RS12480	COG0616	signal peptide processing
XFFB_RS12485	COG0534	Mate efflux family protein
XFFB_RS12500	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
XFFB_RS12510	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
XFFB_RS12515	COG2201	protein-glutamate methylesterase activity
XFFB_RS12520	COG2177	Part of the ABC transporter FtsEX involved in
XFFB_RS12525	COG2884	Cell division ATP-binding protein ftsE
XFFB_RS12530	COG0513	Belongs to the DEAD box helicase family
XFFB_RS12535	COG3118	belongs to the thioredoxin family
XFFB_RS12540	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
XFFB_RS12555	COG0793	Belongs to the peptidase S41A family
XFFB_RS12560	COG4942	peptidase
XFFB_RS12575	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
XFFB_RS12580	COG0493	'glutamate synthase
XFFB_RS12585	COG0067	glutamate synthase
XFFB_RS12585	COG0070	glutamate synthase
XFFB_RS12585	COG0069	glutamate synthase activity
XFFB_RS12620	COG1028	Short-chain dehydrogenase reductase Sdr
XFFB_RS12645	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
XFFB_RS12695	COG1280	lysine exporter protein (LysE YggA)
XFFB_RS12710	COG4942	peptidase
XFFB_RS12740	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
XFFB_RS12755	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
XFFB_RS12870	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
XFFB_RS12875	COG3657	addiction module killer protein
XFFB_RS12930	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
XFFB_RS12940	COG0706	membrane insertase activity
XFFB_RS12945	COG0594	ribonuclease P activity
XFFB_RS12955	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
XFFB_RS13065	COG0629	single-stranded DNA binding
XFFB_RS13075	COG4962	Type ii secretion system protein e
XFFB_RS13090	COG3451	type IV secretory pathway VirB4
XFFB_RS13150	COG0596	Alpha beta hydrolase