locus-tag	class	description
XFPR_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
XFPR_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
XFPR_RS00025	COG0187	DNA topoisomerase II activity
XFPR_RS00035	COG0501	Belongs to the peptidase M48B family
XFPR_RS00075	COG0408	coproporphyrinogen oxidase activity
XFPR_RS00095	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
XFPR_RS00100	COG4969	Belongs to the N-Me-Phe pilin family
XFPR_RS00130	COG0284	orotidine-5'-phosphate decarboxylase activity
XFPR_RS00150	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
XFPR_RS00160	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
XFPR_RS00165	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
XFPR_RS00170	COG0511	ligase activity, forming carbon-carbon bonds
XFPR_RS00175	COG0439	Biotin carboxylase
XFPR_RS00180	COG0210	DNA helicase
XFPR_RS00185	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
XFPR_RS00185	COG1017	nitric oxide dioxygenase activity
XFPR_RS00200	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
XFPR_RS00210	COG1040	competence protein
XFPR_RS00215	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
XFPR_RS00220	COG1752	Esterase of the alpha-beta hydrolase superfamily
XFPR_RS00225	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
XFPR_RS00260	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
XFPR_RS00270	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
XFPR_RS00305	COG3121	Chaperone
XFPR_RS00310	COG3539	Fimbrial protein
XFPR_RS00320	COG1546	Belongs to the CinA family
XFPR_RS00325	COG0477	Major facilitator Superfamily
XFPR_RS00330	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
XFPR_RS00335	COG1923	regulation of RNA biosynthetic process
XFPR_RS00340	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
XFPR_RS00345	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
XFPR_RS00350	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
XFPR_RS00360	COG1534	Rna-binding protein
XFPR_RS00370	COG0129	dihydroxy-acid dehydratase activity
XFPR_RS00395	COG1560	Kdo2-lipid A biosynthetic process
XFPR_RS00400	COG1519	Transferase
XFPR_RS00410	COG0228	four-way junction DNA binding
XFPR_RS00415	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
XFPR_RS00420	COG0336	Belongs to the RNA methyltransferase TrmD family
XFPR_RS00425	COG0335	large ribosomal subunit rRNA binding
XFPR_RS00435	COG2171	N-acyltransferase activity
XFPR_RS00440	COG1393	Belongs to the ArsC family
XFPR_RS00445	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
XFPR_RS00450	COG0367	asparagine synthase
XFPR_RS00460	COG2070	2-Nitropropane dioxygenase
XFPR_RS00465	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
XFPR_RS00470	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
XFPR_RS00475	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
XFPR_RS00490	COG0339	signal peptide processing
XFPR_RS00515	COG0525	valine-tRNA ligase activity
XFPR_RS00550	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
XFPR_RS00560	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
XFPR_RS00570	COG4221	oxidoreductase activity
XFPR_RS00580	COG0018	arginyl-trna synthetase
XFPR_RS00585	COG2003	Belongs to the UPF0758 family
XFPR_RS00590	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
XFPR_RS00600	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
XFPR_RS00610	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
XFPR_RS00640	COG2223	nitrite transmembrane transporter activity
XFPR_RS00645	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
XFPR_RS00650	COG0739	heme binding
XFPR_RS00655	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
XFPR_RS00685	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
XFPR_RS00700	COG1028	Short-chain dehydrogenase reductase Sdr
XFPR_RS00705	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
XFPR_RS00710	COG1272	protein, Hemolysin III
XFPR_RS00715	COG0463	Glycosyl transferase, family 2
XFPR_RS00720	COG0084	hydrolase, TatD family'
XFPR_RS00735	COG0509	glycine decarboxylation via glycine cleavage system
XFPR_RS00740	COG0404	The glycine cleavage system catalyzes the degradation of glycine
XFPR_RS00750	COG0330	HflC and HflK could
XFPR_RS00755	COG3956	TIGRFAM MazG family protein
XFPR_RS00760	COG1218	3'(2'),5'-bisphosphate nucleotidase
XFPR_RS00765	COG0494	nUDIX hydrolase
XFPR_RS00775	COG1385	rRNA (uridine-N3-)-methyltransferase activity
XFPR_RS00780	COG0513	Belongs to the DEAD box helicase family
XFPR_RS00785	COG0720	synthase
XFPR_RS00810	COG1981	membrane
XFPR_RS00815	COG0825	malonyl-CoA metabolic process
XFPR_RS00825	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
XFPR_RS00845	COG0512	Glutamine amidotransferase of anthranilate synthase
XFPR_RS00850	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
XFPR_RS00855	COG0134	indole-3-glycerol-phosphate synthase activity
XFPR_RS00875	COG0006	proline dipeptidase activity
XFPR_RS00890	COG0343	queuine tRNA-ribosyltransferase activity
XFPR_RS00895	COG1862	Preprotein translocase
XFPR_RS00900	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
XFPR_RS00905	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
XFPR_RS00915	COG0617	tRNA 3'-terminal CCA addition
XFPR_RS00925	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
XFPR_RS00930	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
XFPR_RS00935	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
XFPR_RS00940	COG0166	Belongs to the GPI family
XFPR_RS00950	COG0779	Required for maturation of 30S ribosomal subunits
XFPR_RS00955	COG0195	Participates in both transcription termination and antitermination
XFPR_RS00960	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
XFPR_RS00965	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
XFPR_RS00970	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
XFPR_RS00980	COG1185	polyribonucleotide nucleotidyltransferase activity
XFPR_RS00985	COG1733	regulation of RNA biosynthetic process
XFPR_RS00990	COG0702	epimerase
XFPR_RS01030	COG2086	electron transfer activity
XFPR_RS01060	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
XFPR_RS01090	COG0477	Major facilitator Superfamily
XFPR_RS01105	COG0563	adenylate kinase activity
XFPR_RS01110	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
XFPR_RS01115	COG0671	phosphoesterase, PA-phosphatase related
XFPR_RS01130	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
XFPR_RS01135	COG0628	permease
XFPR_RS01155	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
XFPR_RS01160	COG1090	epimerase
XFPR_RS01165	COG0318	PFAM AMP-dependent synthetase and ligase
XFPR_RS01185	COG1049	propionate catabolic process, 2-methylcitrate cycle
XFPR_RS01265	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
XFPR_RS01275	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
XFPR_RS01285	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
XFPR_RS01290	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
XFPR_RS01295	COG1034	ATP synthesis coupled electron transport
XFPR_RS01315	COG0713	ATP synthesis coupled electron transport
XFPR_RS01330	COG1007	ATP synthesis coupled electron transport
XFPR_RS01340	COG2851	Citrate transporter
XFPR_RS01355	COG0642	Histidine kinase
XFPR_RS01415	COG4206	TonB-dependent receptor
XFPR_RS01420	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
XFPR_RS01430	COG0277	FAD linked oxidase domain protein
XFPR_RS01435	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
XFPR_RS01445	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
XFPR_RS01465	COG0305	Participates in initiation and elongation during chromosome replication
XFPR_RS01475	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
XFPR_RS01480	COG0667	Aldo Keto reductase
XFPR_RS01485	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
XFPR_RS01520	COG2194	sulfuric ester hydrolase activity
XFPR_RS01525	COG2124	cytochrome p450
XFPR_RS01530	COG0352	thiamine-phosphate diphosphorylase activity
XFPR_RS01540	COG0542	response to heat
XFPR_RS01595	COG4969	Belongs to the N-Me-Phe pilin family
XFPR_RS01635	COG2856	Zn peptidase
XFPR_RS01655	COG4197	protein conserved in bacteria, prophage-related
XFPR_RS01705	COG0740	serine-type endopeptidase activity
XFPR_RS01770	COG5449	Phage conserved hypothetical protein BR0599
XFPR_RS01835	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
XFPR_RS01855	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
XFPR_RS01870	COG0494	nUDIX hydrolase
XFPR_RS01880	COG2193	ferroxidase activity
XFPR_RS01920	COG0861	Integral membrane protein TerC family
XFPR_RS01925	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
XFPR_RS01930	COG0531	amino acid
XFPR_RS01940	COG1116	anion transmembrane transporter activity
XFPR_RS01945	COG1322	Protein conserved in bacteria
XFPR_RS01950	COG2853	Lipoprotein
XFPR_RS01965	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
XFPR_RS01970	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
XFPR_RS01975	COG1127	ABC transporter
XFPR_RS01980	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
XFPR_RS01985	COG1074	ATP-dependent DNA helicase activity
XFPR_RS02010	COG0180	Tryptophanyl-tRNA synthetase
XFPR_RS02015	COG0358	DNA primase activity
XFPR_RS02025	COG1610	YqeY-like protein
XFPR_RS02035	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
XFPR_RS02040	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
XFPR_RS02045	COG0668	transmembrane transport
XFPR_RS02065	COG1183	phosphatidylcholine synthase activity
XFPR_RS02075	COG0442	prolyl-tRNA aminoacylation
XFPR_RS02100	COG0604	alcohol dehydrogenase
XFPR_RS02105	COG0330	HflC and HflK could
XFPR_RS02110	COG0330	HflC and HflK could
XFPR_RS02120	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
XFPR_RS02125	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
XFPR_RS02130	COG0105	UTP biosynthetic process
XFPR_RS02135	COG0820	rRNA (adenine-C2-)-methyltransferase activity
XFPR_RS02155	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XFPR_RS02160	COG1160	GTP binding
XFPR_RS02165	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
XFPR_RS02170	COG4943	cyclic-guanylate-specific phosphodiesterase activity
XFPR_RS02175	COG1611	Belongs to the LOG family
XFPR_RS02180	COG4968	Prepilin-type N-terminal cleavage methylation domain
XFPR_RS02250	COG2878	Part of a membrane complex involved in electron transport
XFPR_RS02255	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
XFPR_RS02255	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
XFPR_RS02265	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
XFPR_RS02270	COG3107	peptidoglycan biosynthetic process
XFPR_RS02280	COG1162	GTPase activity
XFPR_RS02285	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
XFPR_RS02290	COG0519	Catalyzes the synthesis of GMP from XMP
XFPR_RS02290	COG0518	GMP synthase (glutamine-hydrolyzing) activity
XFPR_RS02305	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
XFPR_RS02310	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
XFPR_RS02320	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
XFPR_RS02330	COG2974	May be involved in recombination
XFPR_RS02335	COG0037	tRNA processing
XFPR_RS02340	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
XFPR_RS02345	COG3590	peptidase
XFPR_RS02370	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
XFPR_RS02375	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
XFPR_RS02385	COG0628	permease
XFPR_RS02395	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
XFPR_RS02400	COG3178	'Phosphotransferase
XFPR_RS02405	COG1555	photosystem II stabilization
XFPR_RS02410	COG1477	protein flavinylation
XFPR_RS02430	COG3128	pkhd-type hydroxylase
XFPR_RS02435	COG4774	siderophore transport
XFPR_RS02455	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
XFPR_RS02470	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
XFPR_RS02505	COG0459	protein refolding
XFPR_RS02515	COG1324	tolerance protein
XFPR_RS02525	COG0352	thiamine-phosphate diphosphorylase activity
XFPR_RS02525	COG0351	phosphomethylpyrimidine kinase
XFPR_RS02535	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
XFPR_RS02635	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
XFPR_RS02645	COG2311	Membrane
XFPR_RS02655	COG0791	NLP P60 protein
XFPR_RS02660	COG0791	NLP P60 protein
XFPR_RS02670	COG1301	dicarboxylic acid transport
XFPR_RS02685	COG0037	tRNA processing
XFPR_RS02690	COG1722	exodeoxyribonuclease VII activity
XFPR_RS02695	COG0142	geranyltranstransferase activity
XFPR_RS02750	COG1028	Short-chain dehydrogenase reductase Sdr
XFPR_RS02765	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
XFPR_RS02770	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
XFPR_RS02795	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
XFPR_RS02800	COG0483	inositol monophosphate 1-phosphatase activity
XFPR_RS02810	COG1509	lysine 2,3-aminomutase activity
XFPR_RS02820	COG0402	S-adenosylhomocysteine deaminase activity
XFPR_RS02825	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
XFPR_RS02830	COG0546	phosphoglycolate phosphatase activity
XFPR_RS02840	COG5434	Belongs to the glycosyl hydrolase 28 family
XFPR_RS02865	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
XFPR_RS02870	COG1138	Cytochrome C-type biogenesis protein
XFPR_RS02875	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
XFPR_RS02895	COG4133	protoheme IX ABC transporter activity
XFPR_RS02915	COG1187	pseudouridine synthase activity
XFPR_RS02920	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
XFPR_RS02925	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
XFPR_RS02945	COG1175	transmembrane transport
XFPR_RS02950	COG0395	ABC-type sugar transport system, permease component
XFPR_RS02985	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
XFPR_RS02995	COG0776	regulation of translation
XFPR_RS03005	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
XFPR_RS03020	COG1210	Utp--glucose-1-phosphate uridylyltransferase
XFPR_RS03025	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
XFPR_RS03035	COG0519	Catalyzes the synthesis of GMP from XMP
XFPR_RS03035	COG0518	GMP synthase (glutamine-hydrolyzing) activity
XFPR_RS03050	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
XFPR_RS03055	COG0261	This protein binds to 23S rRNA in the presence of protein L20
XFPR_RS03060	COG0211	Belongs to the bacterial ribosomal protein bL27 family
XFPR_RS03065	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
XFPR_RS03070	COG0268	Binds directly to 16S ribosomal RNA
XFPR_RS03080	COG0196	riboflavin kinase activity
XFPR_RS03085	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
XFPR_RS03120	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
XFPR_RS03120	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
XFPR_RS03185	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
XFPR_RS03205	COG1064	alcohol dehydrogenase
XFPR_RS03220	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XFPR_RS03225	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XFPR_RS03230	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
XFPR_RS03230	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
XFPR_RS03240	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
XFPR_RS03245	COG0066	3-isopropylmalate dehydratase activity
XFPR_RS03250	COG0473	3-isopropylmalate dehydrogenase activity
XFPR_RS03280	COG0438	transferase activity, transferring glycosyl groups
XFPR_RS03290	COG0438	transferase activity, transferring glycosyl groups
XFPR_RS03295	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
XFPR_RS03300	COG0745	RESPONSE REGULATOR receiver
XFPR_RS03305	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
XFPR_RS03310	COG2954	triphosphatase activity
XFPR_RS03315	COG1472	Belongs to the glycosyl hydrolase 3 family
XFPR_RS03320	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
XFPR_RS03330	COG1278	Cold shock
XFPR_RS03340	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
XFPR_RS03350	COG2914	Belongs to the UPF0125 (RnfH) family
XFPR_RS03355	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XFPR_RS03365	COG0497	DNA recombination
XFPR_RS03375	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
XFPR_RS03380	COG0443	Heat shock 70 kDa protein
XFPR_RS03385	COG0484	heat shock protein binding
XFPR_RS03390	COG1605	Chorismate mutase
XFPR_RS03390	COG0287	Prephenate dehydrogenase
XFPR_RS03400	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
XFPR_RS03405	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
XFPR_RS03410	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
XFPR_RS03425	COG4555	ABC transporter
XFPR_RS03430	COG1668	transmembrane transport
XFPR_RS03445	COG1605	Chorismate mutase
XFPR_RS03445	COG0077	Prephenate dehydratase
XFPR_RS03450	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
XFPR_RS03490	COG3772	lysozyme
XFPR_RS03505	COG0322	excinuclease ABC activity
XFPR_RS03510	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
XFPR_RS03550	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
XFPR_RS03555	COG0489	protein tyrosine kinase activity
XFPR_RS03560	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
XFPR_RS03565	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
XFPR_RS03620	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
XFPR_RS03630	COG1192	Involved in chromosome partitioning
XFPR_RS03635	COG1475	DNA binding
XFPR_RS03645	COG0463	Glycosyl transferase, family 2
XFPR_RS03655	COG0318	PFAM AMP-dependent synthetase and ligase
XFPR_RS03665	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
XFPR_RS03670	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
XFPR_RS03675	COG0676	glucose-6-phosphate 1-epimerase activity
XFPR_RS03685	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
XFPR_RS03705	COG1297	OPT oligopeptide transporter protein
XFPR_RS03710	COG1506	peptidase
XFPR_RS03710	COG0823	Involved in the tonB-independent uptake of proteins
XFPR_RS03715	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XFPR_RS03725	COG1971	Probably functions as a manganese efflux pump
XFPR_RS03730	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
XFPR_RS03740	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
XFPR_RS03745	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
XFPR_RS03750	COG1381	Involved in DNA repair and RecF pathway recombination
XFPR_RS03755	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
XFPR_RS03760	COG0571	ribonuclease III activity
XFPR_RS03775	COG0481	GTPase activity
XFPR_RS03780	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
XFPR_RS03810	COG4953	penicillin-binding protein 1C
XFPR_RS03825	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
XFPR_RS03835	COG1686	Belongs to the peptidase S11 family
XFPR_RS03840	COG1678	Uncharacterized ACR, COG1678
XFPR_RS03850	COG0540	Belongs to the ATCase OTCase family
XFPR_RS03855	COG0460	homoserine dehydrogenase
XFPR_RS03855	COG0527	aspartate kinase activity
XFPR_RS03860	COG0083	homoserine kinase activity
XFPR_RS03870	COG0124	histidyl-tRNA synthetase
XFPR_RS03880	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
XFPR_RS03885	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
XFPR_RS03895	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
XFPR_RS03895	COG0131	Imidazoleglycerol-phosphate dehydratase
XFPR_RS03905	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
XFPR_RS03920	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
XFPR_RS03925	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
XFPR_RS03930	COG0235	Class ii aldolase
XFPR_RS03935	COG0531	amino acid
XFPR_RS03940	COG0531	amino acid
XFPR_RS03945	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
XFPR_RS03950	COG0277	FAD linked oxidase domain protein
XFPR_RS03955	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
XFPR_RS03985	COG3210	domain, Protein
XFPR_RS03985	COG3210	domain, Protein
XFPR_RS04045	COG2951	lytic endotransglycosylase activity
XFPR_RS04070	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
XFPR_RS04085	COG0495	leucyl-tRNA aminoacylation
XFPR_RS04095	COG3118	belongs to the thioredoxin family
XFPR_RS04100	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
XFPR_RS04115	COG2183	response to ionizing radiation
XFPR_RS04130	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
XFPR_RS04140	COG0328	RNA-DNA hybrid ribonuclease activity
XFPR_RS04145	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
XFPR_RS04150	COG0631	protein serine/threonine phosphatase activity
XFPR_RS04165	COG0859	PFAM glycosyl transferase family 9
XFPR_RS04170	COG3642	lipopolysaccharide core region biosynthetic process
XFPR_RS04180	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
XFPR_RS04185	COG2967	ApaG domain
XFPR_RS04190	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
XFPR_RS04195	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
XFPR_RS04200	COG0704	Plays a role in the regulation of phosphate uptake
XFPR_RS04205	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
XFPR_RS04210	COG0581	inorganic phosphate transmembrane transporter activity
XFPR_RS04215	COG0573	inorganic phosphate transmembrane transporter activity
XFPR_RS04220	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
XFPR_RS04225	COG4651	solute:proton antiporter activity
XFPR_RS04225	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
XFPR_RS04235	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
XFPR_RS04245	COG0488	(ABC) transporter
XFPR_RS04250	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
XFPR_RS04395	COG0445	tRNA wobble uridine modification
XFPR_RS04425	COG1469	GTP cyclohydrolase I activity
XFPR_RS04435	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XFPR_RS04440	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XFPR_RS04445	COG2902	Dehydrogenase
XFPR_RS04450	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
XFPR_RS04485	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XFPR_RS04490	COG1028	Short-chain dehydrogenase reductase Sdr
XFPR_RS04495	COG3077	Addiction module antitoxin, RelB DinJ family
XFPR_RS04500	COG3041	Addiction module toxin RelE StbE family
XFPR_RS04530	COG3609	addiction module antidote protein, CC2985 family
XFPR_RS04595	COG2925	Exonuclease
XFPR_RS04605	COG0025	NhaP-type Na H and K H
XFPR_RS04615	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
XFPR_RS04625	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
XFPR_RS04645	COG3079	Belongs to the UPF0149 family
XFPR_RS04650	COG0006	proline dipeptidase activity
XFPR_RS04700	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
XFPR_RS04705	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
XFPR_RS04735	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
XFPR_RS04740	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
XFPR_RS04750	COG0557	exoribonuclease II activity
XFPR_RS04755	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
XFPR_RS04760	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
XFPR_RS04765	COG0302	gtp cyclohydrolase
XFPR_RS04775	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
XFPR_RS04790	COG0151	Belongs to the GarS family
XFPR_RS04795	COG0138	bifunctional purine biosynthesis protein purh
XFPR_RS04805	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
XFPR_RS04815	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
XFPR_RS04830	COG0596	Alpha beta hydrolase
XFPR_RS04835	COG0727	PFAM Uncharacterised protein family (UPF0153)
XFPR_RS04840	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
XFPR_RS04840	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
XFPR_RS04880	COG0840	transmembrane signaling receptor activity
XFPR_RS04885	COG2198	Histidine kinase
XFPR_RS04885	COG0784	Response regulator, receiver
XFPR_RS04885	COG0643	Histidine kinase
XFPR_RS04915	COG0285	dihydrofolate synthase activity
XFPR_RS04925	COG0339	signal peptide processing
XFPR_RS04945	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
XFPR_RS04950	COG1301	dicarboxylic acid transport
XFPR_RS04955	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
XFPR_RS04960	COG0357	Ribosomal RNA small subunit methyltransferase G
XFPR_RS04965	COG2091	lysine biosynthetic process via aminoadipic acid
XFPR_RS04975	COG4644	lycopene metabolic process
XFPR_RS05030	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
XFPR_RS05035	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
XFPR_RS05070	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
XFPR_RS05070	COG0512	Glutamine amidotransferase of anthranilate synthase
XFPR_RS05080	COG0084	hydrolase, TatD family'
XFPR_RS05095	COG0552	protein localization to endoplasmic reticulum
XFPR_RS05105	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
XFPR_RS05115	COG0217	transcriptional regulatory protein
XFPR_RS05120	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
XFPR_RS05125	COG0632	four-way junction helicase activity
XFPR_RS05130	COG3158	transport of potassium into the cell
XFPR_RS05135	COG2255	four-way junction helicase activity
XFPR_RS05140	COG0824	Thioesterase
XFPR_RS05160	COG0823	Involved in the tonB-independent uptake of proteins
XFPR_RS05165	COG2885	chlorophyll binding
XFPR_RS05175	COG0602	queuosine metabolic process
XFPR_RS05180	COG0588	phosphoglycerate mutase activity
XFPR_RS05185	COG1515	deoxyribonuclease V activity
XFPR_RS05195	COG0386	Belongs to the glutathione peroxidase family
XFPR_RS05205	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
XFPR_RS05215	COG0406	alpha-ribazole phosphatase activity
XFPR_RS05340	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
XFPR_RS05345	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
XFPR_RS05365	COG0675	Transposase, IS605 OrfB family
XFPR_RS05370	COG3852	Histidine kinase
XFPR_RS05375	COG2204	response regulator
XFPR_RS05390	COG0004	ammonium transporteR
XFPR_RS05395	COG0347	Belongs to the P(II) protein family
XFPR_RS05400	COG0174	glutamine synthetase
XFPR_RS05405	COG1968	undecaprenyl-diphosphatase activity
XFPR_RS05410	COG2353	YceI-like domain
XFPR_RS05435	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
XFPR_RS05445	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
XFPR_RS05470	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
XFPR_RS05475	COG1764	response to oxidative stress
XFPR_RS05480	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
XFPR_RS05490	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
XFPR_RS05510	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
XFPR_RS05515	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
XFPR_RS05520	COG0333	Belongs to the bacterial ribosomal protein bL32 family
XFPR_RS05525	COG1399	metal-binding, possibly nucleic acid-binding protein
XFPR_RS05535	COG0714	Associated with various cellular activities
XFPR_RS05555	COG0537	adenosine 5'-monophosphoramidase activity
XFPR_RS05565	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
XFPR_RS05600	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
XFPR_RS05605	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
XFPR_RS05610	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
XFPR_RS05635	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
XFPR_RS05635	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
XFPR_RS05640	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
XFPR_RS05725	COG0629	single-stranded DNA binding
XFPR_RS05905	COG1064	alcohol dehydrogenase
XFPR_RS05915	COG4221	oxidoreductase activity
XFPR_RS05930	COG3386	PFAM SMP-30 Gluconolaconase
XFPR_RS05935	COG1028	Short-chain dehydrogenase reductase Sdr
XFPR_RS05940	COG2133	pyrroloquinoline quinone binding
XFPR_RS05970	COG1064	alcohol dehydrogenase
XFPR_RS05980	COG1902	pentaerythritol trinitrate reductase activity
XFPR_RS05985	COG0583	DNA-binding transcription factor activity
XFPR_RS05990	COG0667	Aldo Keto reductase
XFPR_RS06010	COG1942	4-Oxalocrotonate Tautomerase
XFPR_RS06015	COG0667	Aldo Keto reductase
XFPR_RS06020	COG0667	Aldo Keto reductase
XFPR_RS06030	COG1396	sequence-specific DNA binding
XFPR_RS06040	COG0582	viral genome integration into host DNA
XFPR_RS06045	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
XFPR_RS06050	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
XFPR_RS06055	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
XFPR_RS06060	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
XFPR_RS06075	COG0251	oxidation-reduction process
XFPR_RS06080	COG0392	lysyltransferase activity
XFPR_RS06080	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
XFPR_RS06090	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
XFPR_RS06100	COG0463	Glycosyl transferase, family 2
XFPR_RS06130	COG0181	hydroxymethylbilane synthase activity
XFPR_RS06140	COG3275	phosphorelay sensor kinase activity
XFPR_RS06150	COG2943	transferase activity, transferring hexosyl groups
XFPR_RS06165	COG2226	methyltransferase
XFPR_RS06175	COG2027	D-alanyl-D-alanine carboxypeptidase
XFPR_RS06185	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
XFPR_RS06200	COG2900	Belongs to the SlyX family
XFPR_RS06215	COG0386	Belongs to the glutathione peroxidase family
XFPR_RS06225	COG1131	(ABC) transporter
XFPR_RS06245	COG3657	addiction module killer protein
XFPR_RS06250	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
XFPR_RS06350	COG2369	cell adhesion
XFPR_RS06360	COG5410	chromosome segregation
XFPR_RS06385	COG3772	lysozyme
XFPR_RS06405	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
XFPR_RS06460	COG2850	peptidyl-arginine hydroxylation
XFPR_RS06465	COG0567	Dehydrogenase, E1 component
XFPR_RS06490	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
XFPR_RS06510	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
XFPR_RS06515	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
XFPR_RS06520	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
XFPR_RS06540	COG0583	DNA-binding transcription factor activity
XFPR_RS06545	COG3634	alkyl hydroperoxide reductase activity
XFPR_RS06560	COG1450	Type ii and iii secretion system protein
XFPR_RS06575	COG3166	PFAM Fimbrial assembly family protein
XFPR_RS06580	COG3156	type II secretion system protein K
XFPR_RS06585	COG4795	General secretion pathway protein
XFPR_RS06590	COG2165	general secretion pathway protein
XFPR_RS06595	COG4970	Tfp pilus assembly protein FimT
XFPR_RS06600	COG2165	general secretion pathway protein
XFPR_RS06605	COG1459	type II secretion system
XFPR_RS06610	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
XFPR_RS06615	COG5295	Hep Hag repeat protein
XFPR_RS06635	COG2890	protein-(glutamine-N5) methyltransferase activity
XFPR_RS06640	COG0596	Alpha beta hydrolase
XFPR_RS06655	COG0635	Involved in the biosynthesis of porphyrin-containing compound
XFPR_RS06660	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
XFPR_RS06670	COG1561	YicC-like family, N-terminal region
XFPR_RS06675	COG0194	GDP metabolic process
XFPR_RS06680	COG1758	RNA polymerase activity
XFPR_RS06685	COG0529	Catalyzes the synthesis of activated sulfate
XFPR_RS06685	COG2895	sulfate adenylyltransferase (ATP) activity
XFPR_RS06690	COG0175	sulfate reduction
XFPR_RS06700	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
XFPR_RS06705	COG0175	sulfate reduction
XFPR_RS06720	COG2912	Transglutaminase-like superfamily
XFPR_RS06740	COG0308	aminopeptidase N
XFPR_RS06745	COG2226	methyltransferase
XFPR_RS06780	COG3617	BRO family, N-terminal domain
XFPR_RS06905	COG3772	lysozyme
XFPR_RS07075	COG3617	BRO family, N-terminal domain
XFPR_RS07200	COG3772	lysozyme
XFPR_RS07345	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
XFPR_RS07355	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
XFPR_RS07365	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
XFPR_RS07385	COG1959	2 iron, 2 sulfur cluster binding
XFPR_RS07390	COG0719	Fe-S assembly protein
XFPR_RS07395	COG0396	ATPase activity
XFPR_RS07400	COG0719	Fe-S assembly protein
XFPR_RS07405	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
XFPR_RS07415	COG0297	glycogen (starch) synthase activity
XFPR_RS07420	COG0726	polysaccharide deacetylase
XFPR_RS07425	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
XFPR_RS07430	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
XFPR_RS07435	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
XFPR_RS07440	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
XFPR_RS07445	COG1609	Transcriptional regulator
XFPR_RS07460	COG0837	glucose binding
XFPR_RS07475	COG1028	Short-chain dehydrogenase reductase Sdr
XFPR_RS07480	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
XFPR_RS07485	COG4191	Histidine kinase
XFPR_RS07490	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
XFPR_RS07495	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
XFPR_RS07500	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
XFPR_RS07510	COG1674	ftsk spoiiie
XFPR_RS07515	COG0492	ferredoxin-NADP+ reductase activity
XFPR_RS07525	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
XFPR_RS07530	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
XFPR_RS07535	COG0542	response to heat
XFPR_RS07540	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
XFPR_RS07550	COG0482	sulfurtransferase activity
XFPR_RS07555	COG2915	High frequency lysogenization protein hflD homolog
XFPR_RS07565	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
XFPR_RS07580	COG0218	Necessary for normal cell division and for the maintenance of normal septation
XFPR_RS07595	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
XFPR_RS07605	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
XFPR_RS07635	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
XFPR_RS07640	COG0271	Belongs to the BolA IbaG family
XFPR_RS07650	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
XFPR_RS07665	COG1137	ATPase activity
XFPR_RS07685	COG1660	Displays ATPase and GTPase activities
XFPR_RS07700	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
XFPR_RS07725	COG0629	single-stranded DNA binding
XFPR_RS07730	COG0142	geranyltranstransferase activity
XFPR_RS07735	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
XFPR_RS07740	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
XFPR_RS07745	COG1845	cytochrome c oxidase, subunit III
XFPR_RS07750	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
XFPR_RS07755	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
XFPR_RS07755	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
XFPR_RS07765	COG1643	Atp-dependent helicase
XFPR_RS07770	COG0783	Belongs to the Dps family
XFPR_RS07775	COG0514	ATP-dependent DNA helicase (RecQ)
XFPR_RS07785	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
XFPR_RS07795	COG0159	tryptophan synthase activity
XFPR_RS07805	COG0135	phosphoribosylanthranilate isomerase activity
XFPR_RS07810	COG0101	tRNA pseudouridine synthase activity
XFPR_RS07820	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
XFPR_RS07825	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
XFPR_RS07830	COG2890	protein-(glutamine-N5) methyltransferase activity
XFPR_RS07845	COG0741	lytic transglycosylase activity
XFPR_RS07850	COG0617	tRNA 3'-terminal CCA addition
XFPR_RS07855	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
XFPR_RS07870	COG0156	8-amino-7-oxononanoate synthase activity
XFPR_RS07875	COG2267	carboxylic ester hydrolase activity
XFPR_RS07885	COG1846	Transcriptional regulator
XFPR_RS07895	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
XFPR_RS07905	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
XFPR_RS07910	COG4208	sulfate ABC transporter
XFPR_RS07915	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
XFPR_RS07930	COG3142	Participates in the control of copper homeostasis
XFPR_RS07935	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
XFPR_RS07940	COG0259	pyridoxamine-phosphate oxidase activity
XFPR_RS07945	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
XFPR_RS07950	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
XFPR_RS07955	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
XFPR_RS07960	COG2198	Histidine kinase
XFPR_RS07960	COG0784	Response regulator, receiver
XFPR_RS07960	COG2205	protein histidine kinase activity
XFPR_RS07965	COG2353	YceI-like domain
XFPR_RS07980	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
XFPR_RS07995	COG0850	regulation of cytokinetic process
XFPR_RS08000	COG2894	cell division
XFPR_RS08020	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
XFPR_RS08025	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
XFPR_RS08030	COG0772	Belongs to the SEDS family
XFPR_RS08035	COG0768	penicillin binding
XFPR_RS08040	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
XFPR_RS08045	COG1792	Involved in formation and maintenance of cell shape
XFPR_RS08050	COG1077	Cell shape determining protein MreB Mrl
XFPR_RS08085	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
XFPR_RS08090	COG1127	ABC transporter
XFPR_RS08095	COG3218	ABC-type transport auxiliary lipoprotein component
XFPR_RS08095	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
XFPR_RS08110	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
XFPR_RS08110	COG0644	oxidoreductase
XFPR_RS08120	COG2840	Smr protein MutS2
XFPR_RS08125	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
XFPR_RS08130	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
XFPR_RS08135	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
XFPR_RS08140	COG0148	phosphopyruvate hydratase activity
XFPR_RS08145	COG2877	3-deoxy-8-phosphooctulonate synthase activity
XFPR_RS08150	COG0504	CTP synthase activity
XFPR_RS08170	COG1253	flavin adenine dinucleotide binding
XFPR_RS08175	COG2733	membrane
XFPR_RS08200	COG2921	Belongs to the UPF0250 family
XFPR_RS08205	COG0321	lipoyl(octanoyl) transferase activity
XFPR_RS08210	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
XFPR_RS08215	COG5297	Belongs to the glycosyl hydrolase family 6
XFPR_RS08245	COG0668	transmembrane transport
XFPR_RS08250	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
XFPR_RS08275	COG2373	Large extracellular alpha-helical protein
XFPR_RS08350	COG2337	Toxic component of a toxin-antitoxin (TA) module
XFPR_RS08435	COG0582	viral genome integration into host DNA
XFPR_RS08445	COG2911	Protein conserved in bacteria
XFPR_RS08450	COG0729	surface antigen
XFPR_RS08455	COG1956	GAF domain-containing protein
XFPR_RS08460	COG1643	Atp-dependent helicase
XFPR_RS08480	COG1131	(ABC) transporter
XFPR_RS08485	COG0842	Transport permease protein
XFPR_RS08520	COG1217	gtp-binding protein TYPA
XFPR_RS08525	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
XFPR_RS08530	COG0039	L-malate dehydrogenase activity
XFPR_RS08535	COG0625	glutathione transferase activity
XFPR_RS08540	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
XFPR_RS08585	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
XFPR_RS08590	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
XFPR_RS08615	COG0776	regulation of translation
XFPR_RS08625	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
XFPR_RS08630	COG0740	serine-type endopeptidase activity
XFPR_RS08635	COG0544	peptidyl-prolyl cis-trans isomerase activity
XFPR_RS08650	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
XFPR_RS08660	COG5380	lipid catabolic process
XFPR_RS08670	COG0606	chelatase, subunit chli
XFPR_RS08675	COG2960	long-chain fatty acid transporting porin activity
XFPR_RS08680	COG0203	ribosomal protein L17
XFPR_RS08690	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
XFPR_RS08695	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
XFPR_RS08700	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
XFPR_RS08705	COG0201	protein transport
XFPR_RS08710	COG0200	Binds to the 23S rRNA
XFPR_RS08715	COG1841	ribosomal large subunit assembly
XFPR_RS08720	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
XFPR_RS08730	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
XFPR_RS08735	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
XFPR_RS08740	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
XFPR_RS08745	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
XFPR_RS08750	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
XFPR_RS08760	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
XFPR_RS08765	COG0255	Belongs to the universal ribosomal protein uL29 family
XFPR_RS08775	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
XFPR_RS08780	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
XFPR_RS08785	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
XFPR_RS08790	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
XFPR_RS08795	COG0089	rRNA binding
XFPR_RS08800	COG0088	Forms part of the polypeptide exit tunnel
XFPR_RS08805	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
XFPR_RS08820	COG0356	it plays a direct role in the translocation of protons across the membrane
XFPR_RS08830	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
XFPR_RS08835	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
XFPR_RS08840	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
XFPR_RS08845	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
XFPR_RS08850	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
XFPR_RS08855	COG0355	proton-transporting ATP synthase activity, rotational mechanism
XFPR_RS08865	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
XFPR_RS08875	COG1064	alcohol dehydrogenase
XFPR_RS08885	COG0655	NAD(P)H dehydrogenase (quinone) activity
XFPR_RS08890	COG0583	DNA-binding transcription factor activity
XFPR_RS08895	COG0312	modulator of DNA gyrase
XFPR_RS08905	COG0312	modulator of DNA gyrase
XFPR_RS08920	COG0424	maF-like protein
XFPR_RS08935	COG0494	nUDIX hydrolase
XFPR_RS08955	COG0019	diaminopimelate decarboxylase activity
XFPR_RS08960	COG1024	Enoyl-CoA hydratase
XFPR_RS08975	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
XFPR_RS08985	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
XFPR_RS08995	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
XFPR_RS09000	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
XFPR_RS09005	COG0505	Belongs to the CarA family
XFPR_RS09010	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
XFPR_RS09030	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
XFPR_RS09055	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
XFPR_RS09075	COG1663	tetraacyldisaccharide 4'-kinase activity
XFPR_RS09080	COG1132	(ABC) transporter
XFPR_RS09090	COG0811	peptide transport
XFPR_RS09100	COG1136	(ABC) transporter
XFPR_RS09105	COG4591	ABC-type transport system involved in lipoprotein release permease component
XFPR_RS09120	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
XFPR_RS09130	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
XFPR_RS09135	COG2009	succinate dehydrogenase
XFPR_RS09145	COG0354	folic acid binding
XFPR_RS09160	COG0837	glucose binding
XFPR_RS09165	COG0363	glucosamine-6-phosphate deaminase activity
XFPR_RS09195	COG0528	UMP kinase activity
XFPR_RS09215	COG2067	long-chain fatty acid transport protein
XFPR_RS09220	COG0233	cytoplasmic translational termination
XFPR_RS09225	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
XFPR_RS09230	COG0575	Belongs to the CDS family
XFPR_RS09235	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
XFPR_RS09240	COG0750	zinc metalloprotease
XFPR_RS09250	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XFPR_RS09255	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
XFPR_RS09260	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XFPR_RS09265	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XFPR_RS09270	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
XFPR_RS09320	COG1946	Acyl-CoA thioesterase
XFPR_RS09330	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
XFPR_RS09335	COG1914	H( )-stimulated, divalent metal cation uptake system
XFPR_RS09410	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
XFPR_RS09415	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
XFPR_RS09420	COG0165	Argininosuccinate lyase
XFPR_RS09430	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
XFPR_RS09435	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
XFPR_RS09440	COG0137	argininosuccinate synthase activity
XFPR_RS09445	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
XFPR_RS09455	COG0215	cysteine-tRNA ligase activity
XFPR_RS09460	COG2166	iron-sulfur cluster assembly
XFPR_RS09480	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
XFPR_RS09485	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
XFPR_RS09505	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
XFPR_RS09515	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
XFPR_RS09520	COG0742	ribosomal rna small subunit methyltransferase
XFPR_RS09525	COG0326	Molecular chaperone. Has ATPase activity
XFPR_RS09530	COG0281	malic enzyme
XFPR_RS09530	COG0280	phosphate acetyltransferase
XFPR_RS09535	COG1301	dicarboxylic acid transport
XFPR_RS09550	COG2205	protein histidine kinase activity
XFPR_RS09550	COG0784	Response regulator, receiver
XFPR_RS09705	COG2369	cell adhesion
XFPR_RS09720	COG3567	Phage-associated protein, HI1409 family
XFPR_RS09725	COG5410	chromosome segregation
XFPR_RS09750	COG3772	lysozyme
XFPR_RS09765	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
XFPR_RS09870	COG5532	Uncharacterized conserved protein (DUF2303)
XFPR_RS09890	COG3617	BRO family, N-terminal domain
XFPR_RS09900	COG0629	single-stranded DNA binding
XFPR_RS09915	COG0556	nucleotide-excision repair
XFPR_RS09930	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
XFPR_RS09940	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
XFPR_RS09960	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
XFPR_RS09965	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
XFPR_RS09970	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
XFPR_RS09985	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
XFPR_RS09985	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
XFPR_RS09990	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
XFPR_RS10000	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
XFPR_RS10005	COG0488	(ABC) transporter
XFPR_RS10010	COG0579	oxidoreductase
XFPR_RS10015	COG3011	Protein conserved in bacteria
XFPR_RS10020	COG1496	oxidoreductase activity
XFPR_RS10025	COG0564	pseudouridine synthase activity
XFPR_RS10030	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XFPR_RS10050	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
XFPR_RS10050	COG1918	ferrous iron import across plasma membrane
XFPR_RS10060	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
XFPR_RS10085	COG0758	DNA mediated transformation
XFPR_RS10090	COG2922	Belongs to the Smg family
XFPR_RS10095	COG1754	DNA topoisomerase type I activity
XFPR_RS10095	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
XFPR_RS10100	COG0009	L-threonylcarbamoyladenylate synthase
XFPR_RS10130	COG2969	positive regulation of protein catabolic process
XFPR_RS10135	COG0625	glutathione transferase activity
XFPR_RS10140	COG2857	Cytochrome c1
XFPR_RS10145	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
XFPR_RS10150	COG0723	plastoquinol--plastocyanin reductase activity
XFPR_RS10155	COG0741	lytic transglycosylase activity
XFPR_RS10160	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
XFPR_RS10170	COG1702	phosphate starvation-inducible protein PhoH
XFPR_RS10175	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
XFPR_RS10185	COG4535	Mg2 and Co2 transporter CorC
XFPR_RS10240	COG3210	domain, Protein
XFPR_RS10260	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
XFPR_RS10270	COG1199	ATP-dependent helicase activity
XFPR_RS10280	COG0288	reversible hydration of carbon dioxide
XFPR_RS10300	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
XFPR_RS10305	COG2011	ABC-type metal ion transport system permease component
XFPR_RS10310	COG1464	Belongs to the NlpA lipoprotein family
XFPR_RS10320	COG0508	dehydrogenase complex catalyzes the overall conversion of
XFPR_RS10325	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
XFPR_RS10340	COG0626	cystathionine gamma-synthase activity
XFPR_RS10345	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
XFPR_RS10350	COG0739	heme binding
XFPR_RS10360	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
XFPR_RS10365	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
XFPR_RS10370	COG1238	metal cluster binding
XFPR_RS10385	COG5002	protein histidine kinase activity
XFPR_RS10390	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
XFPR_RS10395	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
XFPR_RS10400	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
XFPR_RS10405	COG3858	chitin binding
XFPR_RS10405	COG1388	LysM domain
XFPR_RS10410	COG3525	Glycosyl hydrolase, family 20, catalytic domain
XFPR_RS10420	COG1472	Belongs to the glycosyl hydrolase 3 family
XFPR_RS10435	COG3537	Alpha-1,2-mannosidase
XFPR_RS10450	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
XFPR_RS10455	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
XFPR_RS10460	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
XFPR_RS10465	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
XFPR_RS10470	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
XFPR_RS10475	COG0583	DNA-binding transcription factor activity
XFPR_RS10500	COG3588	fructose-bisphosphate aldolase
XFPR_RS10510	COG0469	pyruvate kinase activity
XFPR_RS10515	COG0126	phosphoglycerate kinase activity
XFPR_RS10520	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
XFPR_RS10525	COG0735	belongs to the Fur family
XFPR_RS10535	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
XFPR_RS10535	COG5297	Belongs to the glycosyl hydrolase family 6
XFPR_RS10540	COG0612	Peptidase, M16
XFPR_RS10560	COG4305	rare lipoprotein A
XFPR_RS10565	COG0653	protein targeting
XFPR_RS10570	COG0739	heme binding
XFPR_RS10580	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
XFPR_RS10585	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
XFPR_RS10595	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
XFPR_RS10600	COG1181	Belongs to the D-alanine--D-alanine ligase family
XFPR_RS10605	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
XFPR_RS10610	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
XFPR_RS10620	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
XFPR_RS10625	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
XFPR_RS10630	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
XFPR_RS10640	COG3116	cell division
XFPR_RS10645	COG0275	rRNA processing
XFPR_RS10655	COG0471	metal ion transport
XFPR_RS10655	COG3273	potassium ion transport
XFPR_RS10660	COG0220	tRNA (guanine-N7-)-methyltransferase activity
XFPR_RS10665	COG2022	thiamine diphosphate biosynthetic process
XFPR_RS10695	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
XFPR_RS10695	COG2755	lipolytic protein G-D-S-L family
XFPR_RS10725	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
XFPR_RS10745	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
XFPR_RS10745	COG3453	Protein conserved in bacteria
XFPR_RS10750	COG0640	Transcriptional regulator
XFPR_RS10755	COG2391	methyltransferase activity
XFPR_RS10770	COG0717	Belongs to the dCTP deaminase family
XFPR_RS10780	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
XFPR_RS10785	COG0860	N-Acetylmuramoyl-L-alanine amidase
XFPR_RS10790	COG0802	atpase or kinase
XFPR_RS10795	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
XFPR_RS10795	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
XFPR_RS10800	COG1570	exodeoxyribonuclease VII activity
XFPR_RS10825	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
XFPR_RS10845	COG0776	regulation of translation
XFPR_RS10850	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
XFPR_RS10850	COG0072	phenylalanine-tRNA ligase activity
XFPR_RS10855	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
XFPR_RS10860	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
XFPR_RS10870	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
XFPR_RS10875	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
XFPR_RS10890	COG0745	RESPONSE REGULATOR receiver
XFPR_RS10895	COG0642	Histidine kinase
XFPR_RS10900	COG0237	dephospho-CoA kinase activity
XFPR_RS10905	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
XFPR_RS10945	COG0045	succinate-CoA ligase (ADP-forming) activity
XFPR_RS10950	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
XFPR_RS10960	COG2831	hemolysin activation secretion protein
XFPR_RS10975	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
XFPR_RS10985	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
XFPR_RS10995	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
XFPR_RS11000	COG3115	cell septum assembly
XFPR_RS11010	COG0359	binds to the 23S rRNA
XFPR_RS11015	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
XFPR_RS11030	COG0017	Asparaginyl-tRNA synthetase
XFPR_RS11050	COG0167	dihydroorotate dehydrogenase activity
XFPR_RS11055	COG0812	UDP-N-acetylmuramate dehydrogenase activity
XFPR_RS11060	COG0697	spore germination
XFPR_RS11070	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
XFPR_RS11080	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
XFPR_RS11085	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
XFPR_RS11100	COG1132	(ABC) transporter
XFPR_RS11105	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
XFPR_RS11110	COG1538	Outer membrane efflux protein
XFPR_RS11115	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XFPR_RS11130	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
XFPR_RS11145	COG4783	chaperone-mediated protein folding
XFPR_RS11155	COG0473	3-isopropylmalate dehydrogenase activity
XFPR_RS11165	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
XFPR_RS11175	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
XFPR_RS11185	COG0316	Belongs to the HesB IscA family
XFPR_RS11185	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
XFPR_RS11190	COG2154	pterin-4-alpha-carbinolamine dehydratase
XFPR_RS11200	COG0564	pseudouridine synthase activity
XFPR_RS11205	COG1530	ribonuclease E activity
XFPR_RS11210	COG2197	response regulator
XFPR_RS11215	COG1054	Belongs to the UPF0176 family
XFPR_RS11225	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
XFPR_RS11240	COG0488	(ABC) transporter
XFPR_RS11245	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
XFPR_RS11250	COG1278	Cold shock
XFPR_RS11260	COG0501	Belongs to the peptidase M48B family
XFPR_RS11265	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
XFPR_RS11270	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
XFPR_RS11275	COG0049	tRNA binding
XFPR_RS11285	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
XFPR_RS11290	COG0085	RNA polymerase activity
XFPR_RS11295	COG0222	ribosome binding
XFPR_RS11300	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
XFPR_RS11305	COG0081	regulation of translation
XFPR_RS11310	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
XFPR_RS11315	COG0250	Participates in transcription elongation, termination and antitermination
XFPR_RS11320	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
XFPR_RS11350	COG0012	GTP binding
XFPR_RS11355	COG0193	aminoacyl-tRNA hydrolase activity
XFPR_RS11365	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
XFPR_RS11375	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
XFPR_RS11380	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
XFPR_RS11390	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
XFPR_RS11395	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
XFPR_RS11400	COG0116	Belongs to the methyltransferase superfamily
XFPR_RS11400	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
XFPR_RS11435	COG2095	MarC family integral membrane protein
XFPR_RS11440	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
XFPR_RS11455	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
XFPR_RS11465	COG2132	Multicopper oxidase
XFPR_RS11475	COG0210	DNA helicase
XFPR_RS11480	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
XFPR_RS11485	COG0616	signal peptide processing
XFPR_RS11490	COG0534	Mate efflux family protein
XFPR_RS11505	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
XFPR_RS11515	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
XFPR_RS11520	COG2201	protein-glutamate methylesterase activity
XFPR_RS11525	COG2177	Part of the ABC transporter FtsEX involved in
XFPR_RS11530	COG2884	Cell division ATP-binding protein ftsE
XFPR_RS11535	COG0513	Belongs to the DEAD box helicase family
XFPR_RS11540	COG3118	belongs to the thioredoxin family
XFPR_RS11545	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
XFPR_RS11560	COG0793	Belongs to the peptidase S41A family
XFPR_RS11565	COG4942	peptidase
XFPR_RS11575	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
XFPR_RS11580	COG0493	'glutamate synthase
XFPR_RS11585	COG0070	glutamate synthase
XFPR_RS11585	COG0067	glutamate synthase
XFPR_RS11585	COG0069	glutamate synthase activity
XFPR_RS11615	COG1028	Short-chain dehydrogenase reductase Sdr
XFPR_RS11640	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
XFPR_RS11680	COG1280	lysine exporter protein (LysE YggA)
XFPR_RS11690	COG4942	peptidase
XFPR_RS11730	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
XFPR_RS11745	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
XFPR_RS11855	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
XFPR_RS11860	COG3657	addiction module killer protein
XFPR_RS11970	COG3210	domain, Protein
XFPR_RS11970	COG3210	domain, Protein
XFPR_RS11980	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
XFPR_RS11990	COG0706	membrane insertase activity
XFPR_RS11995	COG0594	ribonuclease P activity
XFPR_RS12015	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
XFPR_RS12035	COG3451	type IV secretory pathway VirB4
XFPR_RS12060	COG3736	Type IV secretory pathway, component VirB8
XFPR_RS12070	COG2948	multi-organism process
XFPR_RS12110	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
XFPR_RS12130	COG3657	addiction module killer protein
XFPR_RS12210	COG1475	DNA binding
XFPR_RS12220	COG0629	single-stranded DNA binding