PD_RS00005	SM00382	ATPases associated with a variety of cellular activities
PD_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
PD_RS00010	SM00480	DNA polymerase III beta subunit
PD_RS00025	SM00387	Histidine kinase-like ATPases
PD_RS00025	SM00433	TopoisomeraseII
PD_RS00040	SM00028	Tetratricopeptide repeats
PD_RS00140	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
PD_RS00185	SM00487	DEAD-like helicases superfamily
PD_RS00185	SM00490	helicase superfamily c-terminal domain
PD_RS00185	SM00982	PD_RS00185
PD_RS00185	SM01058	CarD-like/TRCF domain
PD_RS00205	SM00878	Biotin carboxylase C-terminal domain
PD_RS00235	SM00470	ParB-like nuclease domain
PD_RS00245	SM00729	Elongator protein 3, MiaB family, Radical SAM
PD_RS00245	SM00876	Biotin and Thiamin Synthesis associated domain
PD_RS00295	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
PD_RS00295	SM01232	PD_RS00295
PD_RS00305	SM00382	ATPases associated with a variety of cellular activities
PD_RS00305	SM00962	SRP54-type protein, GTPase domain
PD_RS00305	SM00963	SRP54-type protein, helical bundle domain
PD_RS00385	SM00382	ATPases associated with a variety of cellular activities
PD_RS00395	SM01103	PD_RS00395
PD_RS00440	SM00812	Alpha-L-fucosidase
PD_RS00485	SM01172	PD_RS00485
PD_RS00490	SM00710	Parallel beta-helix repeats
PD_RS00490	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
PD_RS00505	SM00382	ATPases associated with a variety of cellular activities
PD_RS00510	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PD_RS00620	SM00836	DALR anticodon binding domain
PD_RS00620	SM01016	Arginyl tRNA synthetase N terminal dom
PD_RS00660	SM00645	Papain family cysteine protease
PD_RS00710	SM00363	S4 RNA-binding domain
PD_RS00740	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
PD_RS00740	SM01232	PD_RS00740
PD_RS00755	SM00822	PD_RS00755
PD_RS00805	SM00244	prohibitin homologues
PD_RS00835	SM00487	DEAD-like helicases superfamily
PD_RS00835	SM00490	helicase superfamily c-terminal domain
PD_RS00850	SM00563	Phosphate acyltransferases
PD_RS00875	SM00481	DNA polymerase alpha chain like domain
PD_RS00885	SM00271	DnaJ molecular chaperone homology domain
PD_RS00920	SM00347	helix_turn_helix multiple antibiotic resistance protein
PD_RS00955	SM01323	PD_RS00955
PD_RS01015	SM00316	Ribosomal protein S1-like RNA-binding domain
PD_RS01015	SM00322	K homology RNA-binding domain
PD_RS01035	SM01387	PD_RS01035
PD_RS01040	SM00316	Ribosomal protein S1-like RNA-binding domain
PD_RS01040	SM00322	K homology RNA-binding domain
PD_RS01085	SM00487	DEAD-like helicases superfamily
PD_RS01085	SM00490	helicase superfamily c-terminal domain
PD_RS01095	SM00893	Electron transfer flavoprotein domain
PD_RS01100	SM00893	Electron transfer flavoprotein domain
PD_RS01155	SM00869	Autotransporter beta-domain
PD_RS01220	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PD_RS01240	SM00966	SpoVT / AbrB like domain 
PD_RS01360	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
PD_RS01365	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
PD_RS01420	SM00448	cheY-homologous receiver domain
PD_RS01420	SM00862	Transcriptional regulatory protein, C terminal
PD_RS01425	SM00387	Histidine kinase-like ATPases
PD_RS01425	SM00388	His Kinase A (phosphoacceptor) domain
PD_RS01440	SM00421	helix_turn_helix, Lux Regulon
PD_RS01440	SM00448	cheY-homologous receiver domain
PD_RS01445	SM00387	Histidine kinase-like ATPases
PD_RS01445	SM00388	His Kinase A (phosphoacceptor) domain
PD_RS01445	SM00448	cheY-homologous receiver domain
PD_RS01460	SM00919	Malic enzyme, NAD binding domain
PD_RS01460	SM01274	PD_RS01460
PD_RS01465	SM00387	Histidine kinase-like ATPases
PD_RS01495	SM00267	diguanylate cyclase
PD_RS01510	SM01234	PD_RS01510
PD_RS01535	SM00840	PD_RS01535
PD_RS01570	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PD_RS01580	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
PD_RS01635	SM00529	Helix-turn-helix diphteria tox regulatory element
PD_RS01665	SM00869	Autotransporter beta-domain
PD_RS01670	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
PD_RS01675	SM00563	Phosphate acyltransferases
PD_RS01690	SM00996	S-adenosyl-L-homocysteine hydrolase
PD_RS01690	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
PD_RS01735	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PD_RS01830	SM00382	ATPases associated with a variety of cellular activities
PD_RS01880	SM00382	ATPases associated with a variety of cellular activities
PD_RS01885	SM00849	Metallo-beta-lactamase superfamily
PD_RS01900	SM00382	ATPases associated with a variety of cellular activities
PD_RS01940	SM00530	Helix-turn-helix XRE-family like proteins 
PD_RS01950	SM00530	Helix-turn-helix XRE-family like proteins 
PD_RS01995	SM00990	PD_RS01995
PD_RS02005	SM00487	DEAD-like helicases superfamily
PD_RS02025	SM00855	Phosphoglycerate mutase family
PD_RS02030	SM00867	YceI-like domain 
PD_RS02035	SM00155	Phospholipase D. Active site motifs.
PD_RS02075	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
PD_RS02075	SM00474	3'-5' exonuclease
PD_RS02075	SM00475	5'-3' exonuclease
PD_RS02075	SM00482	DNA polymerase A domain
PD_RS02085	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
PD_RS02090	SM00851	MGS-like domain
PD_RS02090	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
PD_RS02110	SM00937	PD_RS02110
PD_RS02120	SM00448	cheY-homologous receiver domain
PD_RS02120	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PD_RS02125	SM00387	Histidine kinase-like ATPases
PD_RS02125	SM00388	His Kinase A (phosphoacceptor) domain
PD_RS02125	SM00448	cheY-homologous receiver domain
PD_RS02175	SM00316	Ribosomal protein S1-like RNA-binding domain
PD_RS02235	SM00830	Chorismate mutase type II
PD_RS02245	SM00382	ATPases associated with a variety of cellular activities
PD_RS02290	SM01403	PD_RS02290
PD_RS02310	SM01382	PD_RS02310
PD_RS02310	SM01383	PD_RS02310
PD_RS02325	SM00322	K homology RNA-binding domain
PD_RS02345	SM01374	PD_RS02345
PD_RS02350	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
PD_RS02400	SM00363	S4 RNA-binding domain
PD_RS02400	SM01390	PD_RS02400
PD_RS02405	SM00662	RNA polymerases D
PD_RS02420	SM00382	ATPases associated with a variety of cellular activities
PD_RS02445	SM00984	UDP binding domain
PD_RS02470	SM00382	ATPases associated with a variety of cellular activities
PD_RS02470	SM00994	ClpX C4-type zinc finger
PD_RS02470	SM01086	C-terminal, D2-small domain, of ClpB protein
PD_RS02475	SM00382	ATPases associated with a variety of cellular activities
PD_RS02475	SM00464	Found in ATP-dependent protease La (LON)
PD_RS02480	SM00411	bacterial (prokaryotic) histone like domain
PD_RS02555	SM00155	Phospholipase D. Active site motifs.
PD_RS02575	SM00838	Elongation factor G C-terminus
PD_RS02595	SM00382	ATPases associated with a variety of cellular activities
PD_RS02605	SM00382	ATPases associated with a variety of cellular activities
PD_RS02625	SM00487	DEAD-like helicases superfamily
PD_RS02625	SM00490	helicase superfamily c-terminal domain
PD_RS02625	SM00847	Helicase associated domain (HA2)  Add an annotation
PD_RS02705	SM01359	PD_RS02705
PD_RS02705	SM01360	PD_RS02705
PD_RS02715	SM00342	helix_turn_helix, arabinose operon control protein
PD_RS02725	SM00479	PD_RS02725
PD_RS02755	SM00869	Autotransporter beta-domain
PD_RS02765	SM00729	Elongator protein 3, MiaB family, Radical SAM
PD_RS02795	SM00116	Domain in cystathionine beta-synthase and other proteins.
PD_RS02795	SM01091	Transporter associated domain
PD_RS02810	SM00387	Histidine kinase-like ATPases
PD_RS02810	SM00433	TopoisomeraseII
PD_RS02830	SM01192	PD_RS02830
PD_RS02830	SM01193	PD_RS02830
PD_RS02850	SM00463	Small MutS-related domain
PD_RS02880	SM00382	ATPases associated with a variety of cellular activities
PD_RS02905	SM00268	Actin
PD_RS02935	SM00954	Region found in RelA / SpoT proteins
PD_RS02980	SM00478	endonuclease III
PD_RS02985	SM00867	YceI-like domain 
PD_RS02995	SM00867	YceI-like domain 
PD_RS03000	SM00387	Histidine kinase-like ATPases
PD_RS03000	SM00388	His Kinase A (phosphoacceptor) domain
PD_RS03000	SM00448	cheY-homologous receiver domain
PD_RS03075	SM00382	ATPases associated with a variety of cellular activities
PD_RS03090	SM00434	DNA Topoisomerase IV
PD_RS03095	SM00347	helix_turn_helix multiple antibiotic resistance protein
PD_RS03165	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PD_RS03195	SM00382	ATPases associated with a variety of cellular activities
PD_RS03210	SM00341	Helicase and RNase D C-terminal
PD_RS03210	SM00487	DEAD-like helicases superfamily
PD_RS03210	SM00490	helicase superfamily c-terminal domain
PD_RS03210	SM00956	PD_RS03210
PD_RS03220	SM00382	ATPases associated with a variety of cellular activities
PD_RS03220	SM00487	DEAD-like helicases superfamily
PD_RS03220	SM00490	helicase superfamily c-terminal domain
PD_RS03220	SM00847	Helicase associated domain (HA2)  Add an annotation
PD_RS03285	SM00924	MgtE intracellular N domain
PD_RS03325	SM00382	ATPases associated with a variety of cellular activities
PD_RS03345	SM00116	Domain in cystathionine beta-synthase and other proteins.
PD_RS03385	SM01211	PD_RS03385
PD_RS03465	SM00382	ATPases associated with a variety of cellular activities
PD_RS03465	SM01086	C-terminal, D2-small domain, of ClpB protein
PD_RS03470	SM00316	Ribosomal protein S1-like RNA-binding domain
PD_RS03490	SM00382	ATPases associated with a variety of cellular activities
PD_RS03490	SM00843	PD_RS03490
PD_RS03505	SM00382	ATPases associated with a variety of cellular activities
PD_RS03520	SM00387	Histidine kinase-like ATPases
PD_RS03520	SM00448	cheY-homologous receiver domain
PD_RS03560	SM00354	helix_turn _helix lactose operon repressor
PD_RS03615	SM00382	ATPases associated with a variety of cellular activities
PD_RS03630	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
PD_RS03675	SM01263	PD_RS03675
PD_RS03685	SM00347	helix_turn_helix multiple antibiotic resistance protein
PD_RS03690	SM00528	Domain in histone-like proteins of HNS family
PD_RS03695	SM00028	Tetratricopeptide repeats
PD_RS03740	SM01409	PD_RS03740
PD_RS03745	SM00072	Guanylate kinase homologues.
PD_RS03765	SM00729	Elongator protein 3, MiaB family, Radical SAM
PD_RS03805	SM00382	ATPases associated with a variety of cellular activities
PD_RS03915	SM00100	Cyclic nucleotide-monophosphate binding domain
PD_RS03915	SM00419	helix_turn_helix, cAMP Regulatory protein
PD_RS03960	SM00861	Transketolase, pyrimidine binding domain
PD_RS03965	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
PD_RS04005	SM00327	von Willebrand factor (vWF) type A domain
PD_RS04040	SM01228	PD_RS04040
PD_RS04115	SM00493	PD_RS04115
PD_RS04120	SM00849	Metallo-beta-lactamase superfamily
PD_RS04130	SM00479	PD_RS04130
PD_RS04185	SM01011	Aminopeptidase P, N-terminal domain
PD_RS04235	SM00530	Helix-turn-helix XRE-family like proteins 
PD_RS04270	SM00316	Ribosomal protein S1-like RNA-binding domain
PD_RS04270	SM00357	Cold shock protein domain
PD_RS04270	SM00955	PD_RS04270
PD_RS04275	SM00967	RNA 2'-O ribose methyltransferase substrate binding
PD_RS04310	SM01209	PD_RS04310
PD_RS04310	SM01210	PD_RS04310
PD_RS04315	SM00798	AICARFT/IMPCHase bienzyme
PD_RS04315	SM00851	MGS-like domain
PD_RS04400	SM00448	cheY-homologous receiver domain
PD_RS04405	SM00260	Two component signalling adaptor domain
PD_RS04410	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PD_RS04415	SM00073	Histidine Phosphotransfer domain
PD_RS04415	SM00260	Two component signalling adaptor domain
PD_RS04415	SM00387	Histidine kinase-like ATPases
PD_RS04415	SM00448	cheY-homologous receiver domain
PD_RS04415	SM01231	PD_RS04415
PD_RS04460	SM00411	bacterial (prokaryotic) histone like domain
PD_RS04485	SM00861	Transketolase, pyrimidine binding domain
PD_RS04595	SM00507	HNH nucleases
PD_RS04605	SM00382	ATPases associated with a variety of cellular activities
PD_RS04605	SM00962	SRP54-type protein, GTPase domain
PD_RS04605	SM00963	SRP54-type protein, helical bundle domain
PD_RS04610	SM00478	endonuclease III
PD_RS04610	SM00525	PD_RS04610
PD_RS04630	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PD_RS04640	SM00382	ATPases associated with a variety of cellular activities
PD_RS04685	SM00855	Phosphoglycerate mutase family
PD_RS04720	SM00855	Phosphoglycerate mutase family
PD_RS04905	SM00245	tail specific protease
PD_RS04910	SM00245	tail specific protease
PD_RS04915	SM00869	Autotransporter beta-domain
PD_RS04940	SM00530	Helix-turn-helix XRE-family like proteins 
PD_RS05015	SM00530	Helix-turn-helix XRE-family like proteins 
PD_RS05255	SM01040	BRO family, N-terminal domain
PD_RS05260	SM01040	BRO family, N-terminal domain
PD_RS05350	SM01040	BRO family, N-terminal domain
PD_RS05370	SM00387	Histidine kinase-like ATPases
PD_RS05370	SM00388	His Kinase A (phosphoacceptor) domain
PD_RS05375	SM00382	ATPases associated with a variety of cellular activities
PD_RS05375	SM00448	cheY-homologous receiver domain
PD_RS05385	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
PD_RS05385	SM00493	PD_RS05385
PD_RS05395	SM00938	Nitrogen regulatory protein P-II
PD_RS05400	SM01230	PD_RS05400
PD_RS05410	SM00867	YceI-like domain 
PD_RS05455	SM00833	Cobalamin synthesis protein cobW C-terminal domain
PD_RS05480	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PD_RS05480	SM00245	tail specific protease
PD_RS05505	SM00917	LeuA allosteric (dimerisation) domain
PD_RS05540	SM00460	Transglutaminase/protease-like homologues
PD_RS05555	SM00493	PD_RS05555
PD_RS05565	SM00382	ATPases associated with a variety of cellular activities
PD_RS05600	SM00450	Rhodanese Homology Domain
PD_RS05680	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
PD_RS05680	SM00534	ATPase domain of DNA mismatch repair MUTS family
PD_RS05710	SM00530	Helix-turn-helix XRE-family like proteins 
PD_RS05855	SM00885	D5 N terminal like
PD_RS05860	SM01040	BRO family, N-terminal domain
PD_RS05980	SM00482	DNA polymerase A domain
PD_RS05985	SM00990	PD_RS05985
PD_RS05995	SM00487	DEAD-like helicases superfamily
PD_RS06015	SM00248	ankyrin repeats
PD_RS06025	SM00825	Beta-ketoacyl synthase
PD_RS06055	SM00382	ATPases associated with a variety of cellular activities
PD_RS06080	SM00448	cheY-homologous receiver domain
PD_RS06080	SM00850	LytTr DNA-binding domain
PD_RS06110	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PD_RS06165	SM00984	UDP binding domain
PD_RS06180	SM00382	ATPases associated with a variety of cellular activities
PD_RS06215	SM00530	Helix-turn-helix XRE-family like proteins 
PD_RS06290	SM00990	PD_RS06290
PD_RS06300	SM00487	DEAD-like helicases superfamily
PD_RS06315	SM00382	ATPases associated with a variety of cellular activities
PD_RS06355	SM00382	ATPases associated with a variety of cellular activities
PD_RS06365	SM00479	PD_RS06365
PD_RS06370	SM00650	Ribosomal RNA adenine dimethylases
PD_RS06410	SM00331	Sigma factor PP2C-like phosphatases
PD_RS06410	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
PD_RS06415	SM00479	PD_RS06415
PD_RS06430	SM00849	Metallo-beta-lactamase superfamily
PD_RS06440	SM00316	Ribosomal protein S1-like RNA-binding domain
PD_RS06440	SM00732	Likely ribonuclease with RNase H fold.
PD_RS06445	SM00028	Tetratricopeptide repeats
PD_RS06640	SM00841	Elongation factor P, C-terminal
PD_RS06640	SM01185	PD_RS06640
PD_RS06665	SM01007	Class II Aldolase and Adducin N-terminal domain
PD_RS06750	SM00732	Likely ribonuclease with RNase H fold.
PD_RS06760	SM00936	Penicillin-binding protein 5, C-terminal domain 
PD_RS06775	SM00271	DnaJ molecular chaperone homology domain
PD_RS06810	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PD_RS06815	SM00838	Elongation factor G C-terminus
PD_RS06830	SM00358	Double-stranded RNA binding motif
PD_RS06830	SM00535	Ribonuclease III family
PD_RS06845	SM00861	Transketolase, pyrimidine binding domain
PD_RS06875	SM00564	beta-propeller repeat
PD_RS06935	SM01259	PD_RS06935
PD_RS06950	SM00470	ParB-like nuclease domain
PD_RS06960	SM00849	Metallo-beta-lactamase superfamily
PD_RS07010	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PD_RS07010	SM00465	GIY-YIG type nucleases (URI domain)
PD_RS07040	SM01004	Delta-aminolevulinic acid dehydratase
PD_RS07075	SM00226	Low molecular weight phosphatase family
PD_RS07090	SM00530	Helix-turn-helix XRE-family like proteins 
PD_RS07175	SM00830	Chorismate mutase type II
PD_RS07195	SM00382	ATPases associated with a variety of cellular activities
PD_RS07225	SM00448	cheY-homologous receiver domain
PD_RS07225	SM00862	Transcriptional regulatory protein, C terminal
PD_RS07235	SM00271	DnaJ molecular chaperone homology domain
PD_RS07285	SM00869	Autotransporter beta-domain
PD_RS07290	SM00357	Cold shock protein domain
PD_RS07310	SM01118	PD_RS07310
PD_RS07320	SM00448	cheY-homologous receiver domain
PD_RS07375	SM01329	PD_RS07375
PD_RS07425	SM00829	Enoylreductase
PD_RS07440	SM00450	Rhodanese Homology Domain
PD_RS07455	SM00382	ATPases associated with a variety of cellular activities
PD_RS07600	SM00904	Riboflavin kinase
PD_RS07650	SM00116	Domain in cystathionine beta-synthase and other proteins.
PD_RS07650	SM01240	PD_RS07650
PD_RS07675	SM00028	Tetratricopeptide repeats
PD_RS07685	SM00411	bacterial (prokaryotic) histone like domain
PD_RS07690	SM00316	Ribosomal protein S1-like RNA-binding domain
PD_RS07760	SM00363	S4 RNA-binding domain
PD_RS07780	SM00382	ATPases associated with a variety of cellular activities
PD_RS07815	SM00028	Tetratricopeptide repeats
PD_RS07855	SM00841	Elongation factor P, C-terminal
PD_RS07855	SM01185	PD_RS07855
PD_RS07905	SM00825	Beta-ketoacyl synthase
PD_RS07915	SM00822	PD_RS07915
PD_RS07920	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
PD_RS07970	SM00977	TilS substrate C-terminal domain
PD_RS07975	SM00098	Alkaline phosphatase homologues
PD_RS08010	SM01160	PD_RS08010
PD_RS08015	SM00478	endonuclease III
PD_RS08015	SM00525	PD_RS08015
PD_RS08080	SM00883	Chaperonin 10 Kd subunit
PD_RS08135	SM00116	Domain in cystathionine beta-synthase and other proteins.
PD_RS08160	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
PD_RS08200	SM00382	ATPases associated with a variety of cellular activities
PD_RS08420	SM00400	zinc finger
PD_RS08505	SM00052	Putative diguanylate phosphodiesterase
PD_RS08510	SM00450	Rhodanese Homology Domain
PD_RS08515	SM00382	ATPases associated with a variety of cellular activities
PD_RS08520	SM00564	beta-propeller repeat
PD_RS08535	SM00028	Tetratricopeptide repeats
PD_RS08545	SM00562	PD_RS08545
PD_RS08550	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
PD_RS08555	SM00788	Adenylosuccinate synthetase
PD_RS08565	SM00244	prohibitin homologues
PD_RS08570	SM00244	prohibitin homologues
PD_RS08575	SM00829	Enoylreductase
PD_RS08580	SM00448	cheY-homologous receiver domain
PD_RS08590	SM00528	Domain in histone-like proteins of HNS family
PD_RS08620	SM01217	PD_RS08620
PD_RS08630	SM00905	Dihydroneopterin aldolase
PD_RS08655	SM00400	zinc finger
PD_RS08655	SM00493	PD_RS08655
PD_RS08655	SM00766	DNA primase DnaG DnaB-binding
PD_RS08700	SM00382	ATPases associated with a variety of cellular activities
PD_RS08740	SM00382	ATPases associated with a variety of cellular activities
PD_RS08780	SM00052	Putative diguanylate phosphodiesterase
PD_RS08780	SM00448	cheY-homologous receiver domain
PD_RS08825	SM00387	Histidine kinase-like ATPases
PD_RS08830	SM00448	cheY-homologous receiver domain
PD_RS08830	SM00862	Transcriptional regulatory protein, C terminal
PD_RS08860	SM00382	ATPases associated with a variety of cellular activities
PD_RS08860	SM01086	C-terminal, D2-small domain, of ClpB protein
PD_RS08890	SM00965	Secretin and TonB N terminus short domain
PD_RS08955	SM00487	DEAD-like helicases superfamily
PD_RS08955	SM00490	helicase superfamily c-terminal domain
PD_RS08965	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PD_RS08965	SM00954	Region found in RelA / SpoT proteins
PD_RS09100	SM01040	BRO family, N-terminal domain
PD_RS09105	SM00482	DNA polymerase A domain
PD_RS09110	SM00990	PD_RS09110
PD_RS09120	SM00487	DEAD-like helicases superfamily
PD_RS09150	SM00487	DEAD-like helicases superfamily
PD_RS09150	SM00490	helicase superfamily c-terminal domain
PD_RS09165	SM01130	PD_RS09165
PD_RS09245	SM00382	ATPases associated with a variety of cellular activities
PD_RS09285	SM00899	PD_RS09285
PD_RS09310	SM00257	Lysin motif
PD_RS09325	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
PD_RS09325	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
PD_RS09325	SM00493	PD_RS09325
PD_RS09350	SM00530	Helix-turn-helix XRE-family like proteins 
PD_RS09390	SM00729	Elongator protein 3, MiaB family, Radical SAM
PD_RS09410	SM00116	Domain in cystathionine beta-synthase and other proteins.
PD_RS09410	SM01091	Transporter associated domain
PD_RS09550	SM00491	PD_RS09550
PD_RS09560	SM00947	Carbonic anhydrase
PD_RS09575	SM00382	ATPases associated with a variety of cellular activities
PD_RS09575	SM00930	PD_RS09575
PD_RS09645	SM00257	Lysin motif
PD_RS09655	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PD_RS09655	SM00387	Histidine kinase-like ATPases
PD_RS09655	SM00388	His Kinase A (phosphoacceptor) domain
PD_RS09665	SM01005	Alanine racemase, C-terminal domain
PD_RS09680	SM00636	PD_RS09680
PD_RS09695	SM00758	PD_RS09695
PD_RS09695	SM01217	PD_RS09695
PD_RS09815	SM00637	PD_RS09815
PD_RS09845	SM00957	SecA DEAD-like domain
PD_RS09845	SM00958	SecA preprotein cross-linking domain
PD_RS09865	SM00864	Tubulin/FtsZ family, GTPase domain
PD_RS09865	SM00865	Tubulin/FtsZ family, C-terminal domain
PD_RS09870	SM00842	Cell division protein FtsA
PD_RS09955	SM00869	Autotransporter beta-domain
PD_RS10010	SM00849	Metallo-beta-lactamase superfamily
PD_RS10015	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PD_RS10045	SM00853	MutL C terminal dimerisation domain
PD_RS10045	SM01340	PD_RS10045
PD_RS10050	SM00646	PD_RS10050
PD_RS10080	SM00474	3'-5' exonuclease
PD_RS10085	SM00528	Domain in histone-like proteins of HNS family
PD_RS10110	SM00422	helix_turn_helix, mercury resistance
PD_RS10115	SM00411	bacterial (prokaryotic) histone like domain
PD_RS10120	SM00873	B3/4 domain
PD_RS10120	SM00874	tRNA synthetase B5 domain
PD_RS10120	SM00896	Ferredoxin-fold anticodon binding domain
PD_RS10145	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PD_RS10170	SM00448	cheY-homologous receiver domain
PD_RS10170	SM00862	Transcriptional regulatory protein, C terminal
PD_RS10175	SM00387	Histidine kinase-like ATPases
PD_RS10175	SM00388	His Kinase A (phosphoacceptor) domain
PD_RS10215	SM00382	ATPases associated with a variety of cellular activities
PD_RS10215	SM00448	cheY-homologous receiver domain
PD_RS10220	SM00387	Histidine kinase-like ATPases
PD_RS10220	SM00388	His Kinase A (phosphoacceptor) domain
PD_RS10230	SM00881	CoA binding domain
PD_RS10250	SM00434	DNA Topoisomerase IV
PD_RS10275	SM00292	breast cancer carboxy-terminal domain
PD_RS10275	SM00532	Ligase N family
PD_RS10285	SM00771	ZipA, C-terminal domain (FtsZ-binding)
PD_RS10290	SM00968	SMC proteins Flexible Hinge Domain
PD_RS10325	SM00382	ATPases associated with a variety of cellular activities
PD_RS10350	SM00014	Acid phosphatase homologues
PD_RS10360	SM00387	Histidine kinase-like ATPases
PD_RS10365	SM00448	cheY-homologous receiver domain
PD_RS10385	SM00382	ATPases associated with a variety of cellular activities
PD_RS10420	SM00387	Histidine kinase-like ATPases
PD_RS10420	SM00388	His Kinase A (phosphoacceptor) domain
PD_RS10425	SM00448	cheY-homologous receiver domain
PD_RS10425	SM00862	Transcriptional regulatory protein, C terminal
PD_RS10440	SM01329	PD_RS10440
PD_RS10485	SM00363	S4 RNA-binding domain
PD_RS10490	SM00316	Ribosomal protein S1-like RNA-binding domain
PD_RS10495	SM00421	helix_turn_helix, Lux Regulon
PD_RS10495	SM00448	cheY-homologous receiver domain
PD_RS10500	SM00450	Rhodanese Homology Domain
PD_RS10505	SM00448	cheY-homologous receiver domain
PD_RS10530	SM00382	ATPases associated with a variety of cellular activities
PD_RS10545	SM00357	Cold shock protein domain
PD_RS10550	SM00052	Putative diguanylate phosphodiesterase
PD_RS10550	SM00267	diguanylate cyclase
PD_RS10565	SM00838	Elongation factor G C-terminus
PD_RS10565	SM00889	Elongation factor G, domain IV
PD_RS10580	SM00663	RNA polymerase I subunit A N-terminus
PD_RS10605	SM00649	Ribosomal protein L11/L12
PD_RS10610	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
PD_RS10610	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
PD_RS10660	SM01400	PD_RS10660
PD_RS10680	SM00028	Tetratricopeptide repeats
PD_RS10690	SM00937	PD_RS10690
PD_RS10695	SM00981	PD_RS10695
PD_RS10705	SM00644	PD_RS10705
PD_RS10745	SM01001	AIR carboxylase
PD_RS10805	SM00487	DEAD-like helicases superfamily
PD_RS10805	SM00490	helicase superfamily c-terminal domain
PD_RS10815	SM00986	Uracil DNA glycosylase superfamily
PD_RS10815	SM00987	UreE urease accessory protein, C-terminal domain 
PD_RS10820	SM00448	cheY-homologous receiver domain
PD_RS10830	SM00382	ATPases associated with a variety of cellular activities
PD_RS10835	SM00487	DEAD-like helicases superfamily
PD_RS10835	SM00490	helicase superfamily c-terminal domain
PD_RS10845	SM00357	Cold shock protein domain
PD_RS10845	SM00382	ATPases associated with a variety of cellular activities
PD_RS10845	SM00959	Rho termination factor, N-terminal domain
PD_RS10855	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PD_RS10855	SM00245	tail specific protease
PD_RS10900	SM00812	Alpha-L-fucosidase
PD_RS10935	SM00487	DEAD-like helicases superfamily
PD_RS10955	SM00487	DEAD-like helicases superfamily
PD_RS11295	SM01040	BRO family, N-terminal domain
