##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ASM2099050v1 #!genome-build-accession NCBI_Assembly:GCF_020990505.1 #!annotation-date 12/16/2022 03:03:08 #!annotation-source NCBI RefSeq ##sequence-region NZ_CP087677.1 1 2824746 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444770 NZ_CP087677.1 RefSeq region 1 2824746 . + . ID=NZ_CP087677.1:1..2824746;Dbxref=taxon:1444770;Is_circular=true;Name=ANONYMOUS;country=Taiwan;gbkey=Src;genome=chromosome;isolation-source=plant tissue;mol_type=genomic DNA;strain=PLS15A NZ_CP087677.1 RefSeq gene 101 346 . - . ID=gene-LPH39_RS00005;Name=LPH39_RS00005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00005;old_locus_tag=LPH39_00005 NZ_CP087677.1 Protein Homology CDS 101 346 . - 0 ID=cds-WP_230428284.1;Parent=gene-LPH39_RS00005;Dbxref=Genbank:WP_230428284.1;Name=WP_230428284.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023888.2;locus_tag=LPH39_RS00005;product=hypothetical protein;protein_id=WP_230428284.1;transl_table=11 NZ_CP087677.1 RefSeq gene 930 1544 . - . ID=gene-LPH39_RS00010;Name=LPH39_RS00010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00010;old_locus_tag=LPH39_00010 NZ_CP087677.1 Protein Homology CDS 930 1544 . - 0 ID=cds-WP_081755477.1;Parent=gene-LPH39_RS00010;Dbxref=Genbank:WP_081755477.1;Name=WP_081755477.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852792.1;locus_tag=LPH39_RS00010;product=HNH endonuclease;protein_id=WP_081755477.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1820 2293 . - . ID=gene-LPH39_RS00015;Name=LPH39_RS00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00015;old_locus_tag=LPH39_00015 NZ_CP087677.1 Protein Homology CDS 1820 2293 . - 0 ID=cds-WP_038272510.1;Parent=gene-LPH39_RS00015;Dbxref=Genbank:WP_038272510.1;Name=WP_038272510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448491.1;locus_tag=LPH39_RS00015;product=LEA type 2 family protein;protein_id=WP_038272510.1;transl_table=11 NZ_CP087677.1 RefSeq gene 3138 4349 . + . ID=gene-LPH39_RS00020;Name=ftsY;gbkey=Gene;gene=ftsY;gene_biotype=protein_coding;locus_tag=LPH39_RS00020;old_locus_tag=LPH39_00020 NZ_CP087677.1 Protein Homology CDS 3138 4349 . + 0 ID=cds-WP_038272508.1;Parent=gene-LPH39_RS00020;Dbxref=Genbank:WP_038272508.1;Name=WP_038272508.1;Ontology_term=GO:0009306,GO:0003924,GO:0005047;gbkey=CDS;gene=ftsY;go_function=GTPase activity|0003924||IEA,signal recognition particle binding|0005047||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852793.1;locus_tag=LPH39_RS00020;product=signal recognition particle-docking protein FtsY;protein_id=WP_038272508.1;transl_table=11 NZ_CP087677.1 RefSeq gene 4441 5490 . + . ID=gene-LPH39_RS00025;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=protein_coding;locus_tag=LPH39_RS00025;old_locus_tag=LPH39_00025 NZ_CP087677.1 Protein Homology CDS 4441 5490 . + 0 ID=cds-WP_038272506.1;Parent=gene-LPH39_RS00025;Dbxref=Genbank:WP_038272506.1;Name=WP_038272506.1;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0004844;gbkey=CDS;gene=mutY;go_function=uracil DNA N-glycosylase activity|0004844||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572892.1;locus_tag=LPH39_RS00025;product=A/G-specific adenine glycosylase;protein_id=WP_038272506.1;transl_table=11 NZ_CP087677.1 RefSeq gene 5525 5797 . + . ID=gene-LPH39_RS00030;Name=LPH39_RS00030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00030;old_locus_tag=LPH39_00030 NZ_CP087677.1 Protein Homology CDS 5525 5797 . + 0 ID=cds-WP_038272505.1;Parent=gene-LPH39_RS00030;Dbxref=Genbank:WP_038272505.1;Name=WP_038272505.1;Ontology_term=GO:0005506;gbkey=CDS;go_function=iron ion binding|0005506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031337777.1;locus_tag=LPH39_RS00030;product=oxidative damage protection protein;protein_id=WP_038272505.1;transl_table=11 NZ_CP087677.1 RefSeq gene 6094 6573 . + . ID=gene-LPH39_RS00035;Name=LPH39_RS00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00035;old_locus_tag=LPH39_00035 NZ_CP087677.1 Protein Homology CDS 6094 6573 . + 0 ID=cds-WP_081755474.1;Parent=gene-LPH39_RS00035;Dbxref=Genbank:WP_081755474.1;Name=WP_081755474.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337826.1;locus_tag=LPH39_RS00035;product=DUF2726 domain-containing protein;protein_id=WP_081755474.1;transl_table=11 NZ_CP087677.1 RefSeq gene 8454 9188 . + . ID=gene-LPH39_RS00040;Name=LPH39_RS00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00040;old_locus_tag=LPH39_00040 NZ_CP087677.1 Protein Homology CDS 8454 9188 . + 0 ID=cds-WP_038272500.1;Parent=gene-LPH39_RS00040;Dbxref=Genbank:WP_038272500.1;Name=WP_038272500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052063.1;locus_tag=LPH39_RS00040;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_038272500.1;transl_table=11 NZ_CP087677.1 RefSeq gene 9293 9814 . + . ID=gene-LPH39_RS00045;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=LPH39_RS00045;old_locus_tag=LPH39_00045 NZ_CP087677.1 Protein Homology CDS 9293 9814 . + 0 ID=cds-WP_038272498.1;Parent=gene-LPH39_RS00045;Dbxref=Genbank:WP_038272498.1;Name=WP_038272498.1;Ontology_term=GO:0006310,GO:0008821;gbkey=CDS;gene=ruvC;go_function=crossover junction endodeoxyribonuclease activity|0008821||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097831.1;locus_tag=LPH39_RS00045;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_038272498.1;transl_table=11 NZ_CP087677.1 RefSeq gene 9903 10487 . + . ID=gene-LPH39_RS00050;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=LPH39_RS00050;old_locus_tag=LPH39_00050 NZ_CP087677.1 Protein Homology CDS 9903 10487 . + 0 ID=cds-WP_038272496.1;Parent=gene-LPH39_RS00050;Dbxref=Genbank:WP_038272496.1;Name=WP_038272496.1;Ontology_term=GO:0006310,GO:0009378,GO:0009379;gbkey=CDS;gene=ruvA;go_component=Holliday junction helicase complex|0009379||IEA;go_function=four-way junction helicase activity|0009378||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258432.1;locus_tag=LPH39_RS00050;product=Holliday junction branch migration protein RuvA;protein_id=WP_038272496.1;transl_table=11 NZ_CP087677.1 RefSeq gene 10544 12448 . + . ID=gene-LPH39_RS00055;Name=LPH39_RS00055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00055;old_locus_tag=LPH39_00055 NZ_CP087677.1 Protein Homology CDS 10544 12448 . + 0 ID=cds-WP_038272494.1;Parent=gene-LPH39_RS00055;Dbxref=Genbank:WP_038272494.1;Name=WP_038272494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572898.1;locus_tag=LPH39_RS00055;product=potassium transporter Kup;protein_id=WP_038272494.1;transl_table=11 NZ_CP087677.1 RefSeq gene 12557 13588 . + . ID=gene-LPH39_RS00060;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=LPH39_RS00060;old_locus_tag=LPH39_00060 NZ_CP087677.1 Protein Homology CDS 12557 13588 . + 0 ID=cds-WP_038272492.1;Parent=gene-LPH39_RS00060;Dbxref=Genbank:WP_038272492.1;Name=WP_038272492.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0005524,GO:0009378;gbkey=CDS;gene=ruvB;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085423.1;locus_tag=LPH39_RS00060;product=Holliday junction branch migration DNA helicase RuvB;protein_id=WP_038272492.1;transl_table=11 NZ_CP087677.1 RefSeq gene 13615 14067 . + . ID=gene-LPH39_RS00065;Name=ybgC;gbkey=Gene;gene=ybgC;gene_biotype=protein_coding;locus_tag=LPH39_RS00065;old_locus_tag=LPH39_00065 NZ_CP087677.1 Protein Homology CDS 13615 14067 . + 0 ID=cds-WP_038272516.1;Parent=gene-LPH39_RS00065;Dbxref=Genbank:WP_038272516.1;Name=WP_038272516.1;Ontology_term=GO:0005515,GO:0047617,GO:0005737;gbkey=CDS;gene=ybgC;go_component=cytoplasm|0005737||IEA;go_function=protein binding|0005515||IEA,acyl-CoA hydrolase activity|0047617||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003472570.1;locus_tag=LPH39_RS00065;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_038272516.1;transl_table=11 NZ_CP087677.1 RefSeq gene 14064 14837 . + . ID=gene-LPH39_RS00070;Name=tolQ;gbkey=Gene;gene=tolQ;gene_biotype=protein_coding;locus_tag=LPH39_RS00070;old_locus_tag=LPH39_00070 NZ_CP087677.1 Protein Homology CDS 14064 14837 . + 0 ID=cds-WP_038272490.1;Parent=gene-LPH39_RS00070;Dbxref=Genbank:WP_038272490.1;Name=WP_038272490.1;Ontology_term=GO:1902600,GO:0015078,GO:0005886;gbkey=CDS;gene=tolQ;go_component=plasma membrane|0005886||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410752.1;locus_tag=LPH39_RS00070;product=protein TolQ;protein_id=WP_038272490.1;transl_table=11 NZ_CP087677.1 RefSeq gene 14870 15313 . + . ID=gene-LPH39_RS00075;Name=LPH39_RS00075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00075;old_locus_tag=LPH39_00075 NZ_CP087677.1 Protein Homology CDS 14870 15313 . + 0 ID=cds-WP_038272488.1;Parent=gene-LPH39_RS00075;Dbxref=Genbank:WP_038272488.1;Name=WP_038272488.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852772.1;locus_tag=LPH39_RS00075;product=ExbD/TolR family protein;protein_id=WP_038272488.1;transl_table=11 NZ_CP087677.1 RefSeq gene 15303 16328 . + . ID=gene-LPH39_RS00080;Name=tolA;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=LPH39_RS00080;old_locus_tag=LPH39_00080 NZ_CP087677.1 Protein Homology CDS 15303 16328 . + 0 ID=cds-WP_038272486.1;Parent=gene-LPH39_RS00080;Dbxref=Genbank:WP_038272486.1;Name=WP_038272486.1;Ontology_term=GO:0006810,GO:0005215,GO:0098567;gbkey=CDS;gene=tolA;go_component=periplasmic side of plasma membrane|0098567||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085419.1;locus_tag=LPH39_RS00080;product=cell envelope integrity protein TolA;protein_id=WP_038272486.1;transl_table=11 NZ_CP087677.1 RefSeq gene 16794 18119 . + . ID=gene-LPH39_RS00085;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=LPH39_RS00085;old_locus_tag=LPH39_00085 NZ_CP087677.1 Protein Homology CDS 16794 18119 . + 0 ID=cds-WP_038272484.1;Parent=gene-LPH39_RS00085;Dbxref=Genbank:WP_038272484.1;Name=WP_038272484.1;Ontology_term=GO:0006810,GO:0005215,GO:0030288;gbkey=CDS;gene=tolB;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445349.1;locus_tag=LPH39_RS00085;product=Tol-Pal system beta propeller repeat protein TolB;protein_id=WP_038272484.1;transl_table=11 NZ_CP087677.1 RefSeq gene 18182 18715 . + . ID=gene-LPH39_RS00090;Name=pal;gbkey=Gene;gene=pal;gene_biotype=protein_coding;locus_tag=LPH39_RS00090;old_locus_tag=LPH39_00090 NZ_CP087677.1 Protein Homology CDS 18182 18715 . + 0 ID=cds-WP_038272481.1;Parent=gene-LPH39_RS00090;Dbxref=Genbank:WP_038272481.1;Name=WP_038272481.1;Ontology_term=GO:0009279;gbkey=CDS;gene=pal;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010344309.1;locus_tag=LPH39_RS00090;product=peptidoglycan-associated lipoprotein Pal;protein_id=WP_038272481.1;transl_table=11 NZ_CP087677.1 RefSeq gene 18719 19546 . + . ID=gene-LPH39_RS00095;Name=ybgF;gbkey=Gene;gene=ybgF;gene_biotype=protein_coding;locus_tag=LPH39_RS00095;old_locus_tag=LPH39_00095 NZ_CP087677.1 Protein Homology CDS 18719 19546 . + 0 ID=cds-WP_038272479.1;Parent=gene-LPH39_RS00095;Dbxref=Genbank:WP_038272479.1;Name=WP_038272479.1;Ontology_term=GO:0005515;gbkey=CDS;gene=ybgF;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572906.1;locus_tag=LPH39_RS00095;product=tol-pal system protein YbgF;protein_id=WP_038272479.1;transl_table=11 NZ_CP087677.1 RefSeq gene 19591 20271 . + . ID=gene-LPH39_RS00100;Name=queE;gbkey=Gene;gene=queE;gene_biotype=protein_coding;locus_tag=LPH39_RS00100;old_locus_tag=LPH39_00100 NZ_CP087677.1 Protein Homology CDS 19591 20271 . + 0 ID=cds-WP_051482372.1;Parent=gene-LPH39_RS00100;Dbxref=Genbank:WP_051482372.1;Name=WP_051482372.1;Ontology_term=GO:0006400,GO:0051539,GO:1904047;gbkey=CDS;gene=queE;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159812.1;locus_tag=LPH39_RS00100;product=7-carboxy-7-deazaguanine synthase QueE;protein_id=WP_051482372.1;transl_table=11 NZ_CP087677.1 RefSeq gene 20342 21091 . - . ID=gene-LPH39_RS00105;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=LPH39_RS00105;old_locus_tag=LPH39_00105 NZ_CP087677.1 Protein Homology CDS 20342 21091 . - 0 ID=cds-WP_038272477.1;Parent=gene-LPH39_RS00105;Dbxref=Genbank:WP_038272477.1;Name=WP_038272477.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmA;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167506.1;locus_tag=LPH39_RS00105;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase;protein_id=WP_038272477.1;transl_table=11 NZ_CP087677.1 RefSeq gene 21187 21909 . + . ID=gene-LPH39_RS00110;Name=nfi;gbkey=Gene;gene=nfi;gene_biotype=protein_coding;locus_tag=LPH39_RS00110;old_locus_tag=LPH39_00110 NZ_CP087677.1 Protein Homology CDS 21187 21909 . + 0 ID=cds-WP_171898053.1;Parent=gene-LPH39_RS00110;Dbxref=Genbank:WP_171898053.1;Name=WP_171898053.1;Note=cleaves DNA at apurinic or apyrimidinic sites;Ontology_term=GO:0006281,GO:0004519;gbkey=CDS;gene=nfi;go_function=endonuclease activity|0004519||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894358.1;locus_tag=LPH39_RS00110;product=deoxyribonuclease V;protein_id=WP_171898053.1;transl_table=11 NZ_CP087677.1 RefSeq gene 22072 23604 . - . ID=gene-LPH39_RS00115;Name=LPH39_RS00115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00115;old_locus_tag=LPH39_00115 NZ_CP087677.1 Protein Homology CDS 22072 23604 . - 0 ID=cds-WP_038272473.1;Parent=gene-LPH39_RS00115;Dbxref=Genbank:WP_038272473.1;Name=WP_038272473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852766.1;locus_tag=LPH39_RS00115;product=peptide MFS transporter;protein_id=WP_038272473.1;transl_table=11 NZ_CP087677.1 RefSeq gene 24169 24660 . + . ID=gene-LPH39_RS00120;Name=LPH39_RS00120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00120;old_locus_tag=LPH39_00120 NZ_CP087677.1 Protein Homology CDS 24169 24660 . + 0 ID=cds-WP_038272471.1;Parent=gene-LPH39_RS00120;Dbxref=Genbank:WP_038272471.1;Name=WP_038272471.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572911.1;locus_tag=LPH39_RS00120;product=glutathione peroxidase;protein_id=WP_038272471.1;transl_table=11 NZ_CP087677.1 RefSeq gene 24664 25443 . - . ID=gene-LPH39_RS00125;Name=LPH39_RS00125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00125;old_locus_tag=LPH39_00125 NZ_CP087677.1 Protein Homology CDS 24664 25443 . - 0 ID=cds-WP_038272469.1;Parent=gene-LPH39_RS00125;Dbxref=Genbank:WP_038272469.1;Name=WP_038272469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966679.1;locus_tag=LPH39_RS00125;product=ferredoxin--NADP reductase;protein_id=WP_038272469.1;transl_table=11 NZ_CP087677.1 RefSeq gene 25578 27335 . - . ID=gene-LPH39_RS00130;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;locus_tag=LPH39_RS00130;old_locus_tag=LPH39_00130 NZ_CP087677.1 Protein Homology CDS 25578 27335 . - 0 ID=cds-WP_051482371.1;Parent=gene-LPH39_RS00130;Dbxref=Genbank:WP_051482371.1;Name=WP_051482371.1;Ontology_term=GO:0009228,GO:0051536;gbkey=CDS;gene=thiC;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097836.1;locus_tag=LPH39_RS00130;product=phosphomethylpyrimidine synthase ThiC;protein_id=WP_051482371.1;transl_table=11 NZ_CP087677.1 cmsearch riboswitch 27441 27539 . - . ID=id-NZ_CP087677.1:27441..27539;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch NZ_CP087677.1 RefSeq gene 27787 29862 . + . ID=gene-LPH39_RS00135;Name=LPH39_RS00135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00135;old_locus_tag=LPH39_00135 NZ_CP087677.1 Protein Homology CDS 27787 29862 . + 0 ID=cds-WP_230428285.1;Parent=gene-LPH39_RS00135;Dbxref=Genbank:WP_230428285.1;Name=WP_230428285.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572915.1;locus_tag=LPH39_RS00135;product=S46 family peptidase;protein_id=WP_230428285.1;transl_table=11 NZ_CP087677.1 RefSeq gene 29969 30613 . + . ID=gene-LPH39_RS00140;Name=LPH39_RS00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00140;old_locus_tag=LPH39_00140 NZ_CP087677.1 Protein Homology CDS 29969 30613 . + 0 ID=cds-WP_038272466.1;Parent=gene-LPH39_RS00140;Dbxref=Genbank:WP_038272466.1;Name=WP_038272466.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017910762.1;locus_tag=LPH39_RS00140;product=histidine phosphatase family protein;protein_id=WP_038272466.1;transl_table=11 NZ_CP087677.1 RefSeq gene 30779 31123 . + . ID=gene-LPH39_RS00145;Name=LPH39_RS00145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00145;old_locus_tag=LPH39_00145 NZ_CP087677.1 Protein Homology CDS 30779 31123 . + 0 ID=cds-WP_038272511.1;Parent=gene-LPH39_RS00145;Dbxref=Genbank:WP_038272511.1;Name=WP_038272511.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087000.1;locus_tag=LPH39_RS00145;product=DUF3653 domain-containing protein;protein_id=WP_038272511.1;transl_table=11 NZ_CP087677.1 RefSeq gene 31159 31431 . - . ID=gene-LPH39_RS00150;Name=LPH39_RS00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00150;old_locus_tag=LPH39_00150 NZ_CP087677.1 Protein Homology CDS 31159 31431 . - 0 ID=cds-WP_038272512.1;Parent=gene-LPH39_RS00150;Dbxref=Genbank:WP_038272512.1;Name=WP_038272512.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000615979.1;locus_tag=LPH39_RS00150;product=type II toxin-antitoxin system mRNA interferase toxin%2C RelE/StbE family;protein_id=WP_038272512.1;transl_table=11 NZ_CP087677.1 RefSeq gene 31431 31691 . - . ID=gene-LPH39_RS00155;Name=LPH39_RS00155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00155;old_locus_tag=LPH39_00155 NZ_CP087677.1 Protein Homology CDS 31431 31691 . - 0 ID=cds-WP_038272513.1;Parent=gene-LPH39_RS00155;Dbxref=Genbank:WP_038272513.1;Name=WP_038272513.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000729703.1;locus_tag=LPH39_RS00155;product=type II toxin-antitoxin system RelB/DinJ family antitoxin;protein_id=WP_038272513.1;transl_table=11 NZ_CP087677.1 RefSeq gene 31780 32907 . - . ID=gene-LPH39_RS00160;Name=LPH39_RS00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00160;old_locus_tag=LPH39_00160 NZ_CP087677.1 Protein Homology CDS 31780 32907 . - 0 ID=cds-WP_114867127.1;Parent=gene-LPH39_RS00160;Dbxref=Genbank:WP_114867127.1;Name=WP_114867127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382577.1;locus_tag=LPH39_RS00160;product=hypothetical protein;protein_id=WP_114867127.1;transl_table=11 NZ_CP087677.1 RefSeq gene 32920 33264 . - . ID=gene-LPH39_RS00165;Name=LPH39_RS00165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00165;old_locus_tag=LPH39_00165 NZ_CP087677.1 Protein Homology CDS 32920 33264 . - 0 ID=cds-WP_038273069.1;Parent=gene-LPH39_RS00165;Dbxref=Genbank:WP_038273069.1;Name=WP_038273069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097845.1;locus_tag=LPH39_RS00165;product=DUF2523 family protein;protein_id=WP_038273069.1;transl_table=11 NZ_CP087677.1 RefSeq gene 33267 34652 . - . ID=gene-LPH39_RS00170;Name=LPH39_RS00170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00170;old_locus_tag=LPH39_00170 NZ_CP087677.1 Protein Homology CDS 33267 34652 . - 0 ID=cds-WP_230428213.1;Parent=gene-LPH39_RS00170;Dbxref=Genbank:WP_230428213.1;Name=WP_230428213.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097844.1;locus_tag=LPH39_RS00170;product=furin-like repeat-containing protein;protein_id=WP_230428213.1;transl_table=11 NZ_CP087677.1 RefSeq gene 34832 35068 . - . ID=gene-LPH39_RS00175;Name=LPH39_RS00175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00175;old_locus_tag=LPH39_00175 NZ_CP087677.1 Protein Homology CDS 34832 35068 . - 0 ID=cds-WP_230428212.1;Parent=gene-LPH39_RS00175;Dbxref=Genbank:WP_230428212.1;Name=WP_230428212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382572.1;locus_tag=LPH39_RS00175;product=major capsid protein;protein_id=WP_230428212.1;transl_table=11 NZ_CP087677.1 RefSeq gene 35077 35283 . - . ID=gene-LPH39_RS00180;Name=LPH39_RS00180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00180;old_locus_tag=LPH39_00180 NZ_CP087677.1 Protein Homology CDS 35077 35283 . - 0 ID=cds-WP_038273075.1;Parent=gene-LPH39_RS00180;Dbxref=Genbank:WP_038273075.1;Name=WP_038273075.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382571.1;locus_tag=LPH39_RS00180;product=hypothetical protein;protein_id=WP_038273075.1;transl_table=11 NZ_CP087677.1 RefSeq gene 35286 35600 . - . ID=gene-LPH39_RS00185;Name=LPH39_RS00185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00185;old_locus_tag=LPH39_00185 NZ_CP087677.1 Protein Homology CDS 35286 35600 . - 0 ID=cds-WP_230428211.1;Parent=gene-LPH39_RS00185;Dbxref=Genbank:WP_230428211.1;Name=WP_230428211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003474436.1;locus_tag=LPH39_RS00185;product=hypothetical protein;protein_id=WP_230428211.1;transl_table=11 NZ_CP087677.1 RefSeq gene 35876 36463 . - . ID=gene-LPH39_RS00190;Name=LPH39_RS00190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00190;old_locus_tag=LPH39_00190 NZ_CP087677.1 Protein Homology CDS 35876 36463 . - 0 ID=cds-WP_038273076.1;Parent=gene-LPH39_RS00190;Dbxref=Genbank:WP_038273076.1;Name=WP_038273076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894347.1;locus_tag=LPH39_RS00190;product=hypothetical protein;protein_id=WP_038273076.1;transl_table=11 NZ_CP087677.1 RefSeq gene 36660 36803 . - . ID=gene-LPH39_RS00195;Name=LPH39_RS00195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00195;old_locus_tag=LPH39_00195 NZ_CP087677.1 GeneMarkS-2+ CDS 36660 36803 . - 0 ID=cds-WP_160165233.1;Parent=gene-LPH39_RS00195;Dbxref=Genbank:WP_160165233.1;Name=WP_160165233.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00195;product=hypothetical protein;protein_id=WP_160165233.1;transl_table=11 NZ_CP087677.1 RefSeq gene 36923 37123 . - . ID=gene-LPH39_RS00200;Name=LPH39_RS00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00200;old_locus_tag=LPH39_00200 NZ_CP087677.1 Protein Homology CDS 36923 37123 . - 0 ID=cds-WP_038273077.1;Parent=gene-LPH39_RS00200;Dbxref=Genbank:WP_038273077.1;Name=WP_038273077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853101.1;locus_tag=LPH39_RS00200;product=hypothetical protein;protein_id=WP_038273077.1;transl_table=11 NZ_CP087677.1 RefSeq gene 37172 37435 . - . ID=gene-LPH39_RS00205;Name=LPH39_RS00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00205;old_locus_tag=LPH39_00205 NZ_CP087677.1 GeneMarkS-2+ CDS 37172 37435 . - 0 ID=cds-WP_162814095.1;Parent=gene-LPH39_RS00205;Dbxref=Genbank:WP_162814095.1;Name=WP_162814095.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00205;product=hypothetical protein;protein_id=WP_162814095.1;transl_table=11 NZ_CP087677.1 RefSeq gene 37439 37600 . - . ID=gene-LPH39_RS00210;Name=LPH39_RS00210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00210;old_locus_tag=LPH39_00210 NZ_CP087677.1 GeneMarkS-2+ CDS 37439 37600 . - 0 ID=cds-WP_160165236.1;Parent=gene-LPH39_RS00210;Dbxref=Genbank:WP_160165236.1;Name=WP_160165236.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00210;product=hypothetical protein;protein_id=WP_160165236.1;transl_table=11 NZ_CP087677.1 RefSeq gene 37890 38219 . + . ID=gene-LPH39_RS00215;Name=LPH39_RS00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00215;old_locus_tag=LPH39_00215 NZ_CP087677.1 Protein Homology CDS 37890 38219 . + 0 ID=cds-WP_230428286.1;Parent=gene-LPH39_RS00215;Dbxref=Genbank:WP_230428286.1;Name=WP_230428286.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023888.2;locus_tag=LPH39_RS00215;product=DUF3693 domain-containing protein;protein_id=WP_230428286.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 38308 38808 . - . ID=gene-LPH39_RS00220;Name=LPH39_RS00220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS00220;old_locus_tag=LPH39_00220;partial=true;pseudo=true;start_range=.,38308 NZ_CP087677.1 Protein Homology CDS 38308 38808 . - 0 ID=cds-LPH39_RS00220;Parent=gene-LPH39_RS00220;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: protein motif:HMM:NF012798.2;locus_tag=LPH39_RS00220;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;start_range=.,38308;transl_table=11 NZ_CP087677.1 RefSeq gene 39256 39477 . + . ID=gene-LPH39_RS00225;Name=LPH39_RS00225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00225;old_locus_tag=LPH39_00225 NZ_CP087677.1 Protein Homology CDS 39256 39477 . + 0 ID=cds-WP_038273164.1;Parent=gene-LPH39_RS00225;Dbxref=Genbank:WP_038273164.1;Name=WP_038273164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894329.1;locus_tag=LPH39_RS00225;product=antitoxin MazE family protein;protein_id=WP_038273164.1;transl_table=11 NZ_CP087677.1 RefSeq gene 39474 39797 . + . ID=gene-LPH39_RS00230;Name=LPH39_RS00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00230;old_locus_tag=LPH39_00230 NZ_CP087677.1 Protein Homology CDS 39474 39797 . + 0 ID=cds-WP_038273166.1;Parent=gene-LPH39_RS00230;Dbxref=Genbank:WP_038273166.1;Name=WP_038273166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159824.1;locus_tag=LPH39_RS00230;product=type II toxin-antitoxin system PemK/MazF family toxin;protein_id=WP_038273166.1;transl_table=11 NZ_CP087677.1 RefSeq gene 39898 41046 . - . ID=gene-LPH39_RS00235;Name=LPH39_RS00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00235;old_locus_tag=LPH39_00235 NZ_CP087677.1 Protein Homology CDS 39898 41046 . - 0 ID=cds-WP_069636227.1;Parent=gene-LPH39_RS00235;Dbxref=Genbank:WP_069636227.1;Name=WP_069636227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382577.1;locus_tag=LPH39_RS00235;product=hypothetical protein;protein_id=WP_069636227.1;transl_table=11 NZ_CP087677.1 RefSeq gene 41046 41387 . - . ID=gene-LPH39_RS00240;Name=LPH39_RS00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00240;old_locus_tag=LPH39_00240 NZ_CP087677.1 Protein Homology CDS 41046 41387 . - 0 ID=cds-WP_038273089.1;Parent=gene-LPH39_RS00240;Dbxref=Genbank:WP_038273089.1;Name=WP_038273089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097845.1;locus_tag=LPH39_RS00240;product=DUF2523 family protein;protein_id=WP_038273089.1;transl_table=11 NZ_CP087677.1 RefSeq gene 41391 42458 . - . ID=gene-LPH39_RS00245;Name=LPH39_RS00245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00245;old_locus_tag=LPH39_00245 NZ_CP087677.1 Protein Homology CDS 41391 42458 . - 0 ID=cds-WP_152536670.1;Parent=gene-LPH39_RS00245;Dbxref=Genbank:WP_152536670.1;Name=WP_152536670.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF041109.1;locus_tag=LPH39_RS00245;product=virulence factor TspB C-terminal domain-related protein;protein_id=WP_152536670.1;transl_table=11 NZ_CP087677.1 RefSeq gene 42926 43144 . - . ID=gene-LPH39_RS00250;Name=LPH39_RS00250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00250;old_locus_tag=LPH39_00250 NZ_CP087677.1 Protein Homology CDS 42926 43144 . - 0 ID=cds-WP_051482398.1;Parent=gene-LPH39_RS00250;Dbxref=Genbank:WP_051482398.1;Name=WP_051482398.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017194.2;locus_tag=LPH39_RS00250;product=major capsid protein;protein_id=WP_051482398.1;transl_table=11 NZ_CP087677.1 RefSeq gene 43153 43362 . - . ID=gene-LPH39_RS00255;Name=LPH39_RS00255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00255;old_locus_tag=LPH39_00255 NZ_CP087677.1 Protein Homology CDS 43153 43362 . - 0 ID=cds-WP_230428208.1;Parent=gene-LPH39_RS00255;Dbxref=Genbank:WP_230428208.1;Name=WP_230428208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382571.1;locus_tag=LPH39_RS00255;product=hypothetical protein;protein_id=WP_230428208.1;transl_table=11 NZ_CP087677.1 RefSeq gene 43362 43655 . - . ID=gene-LPH39_RS00260;Name=LPH39_RS00260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00260;old_locus_tag=LPH39_00260 NZ_CP087677.1 Protein Homology CDS 43362 43655 . - 0 ID=cds-WP_038273093.1;Parent=gene-LPH39_RS00260;Dbxref=Genbank:WP_038273093.1;Name=WP_038273093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097860.1;locus_tag=LPH39_RS00260;product=single-stranded DNA-binding protein;protein_id=WP_038273093.1;transl_table=11 NZ_CP087677.1 RefSeq gene 43701 44849 . - . ID=gene-LPH39_RS00265;Name=LPH39_RS00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00265;old_locus_tag=LPH39_00265 NZ_CP087677.1 Protein Homology CDS 43701 44849 . - 0 ID=cds-WP_038273097.1;Parent=gene-LPH39_RS00265;Dbxref=Genbank:WP_038273097.1;Name=WP_038273097.1;Ontology_term=GO:0006270,GO:0003677,GO:0003916;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA replication initiation|0006270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853102.1;locus_tag=LPH39_RS00265;product=replication initiation factor domain-containing protein;protein_id=WP_038273097.1;transl_table=11 NZ_CP087677.1 RefSeq gene 45280 45462 . - . ID=gene-LPH39_RS00270;Name=LPH39_RS00270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00270;old_locus_tag=LPH39_00270 NZ_CP087677.1 Protein Homology CDS 45280 45462 . - 0 ID=cds-WP_114867130.1;Parent=gene-LPH39_RS00270;Dbxref=Genbank:WP_114867130.1;Name=WP_114867130.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853101.1;locus_tag=LPH39_RS00270;product=hypothetical protein;protein_id=WP_114867130.1;transl_table=11 NZ_CP087677.1 RefSeq gene 45493 45717 . - . ID=gene-LPH39_RS00275;Name=LPH39_RS00275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00275;old_locus_tag=LPH39_00275 NZ_CP087677.1 GeneMarkS-2+ CDS 45493 45717 . - 0 ID=cds-WP_160199341.1;Parent=gene-LPH39_RS00275;Dbxref=Genbank:WP_160199341.1;Name=WP_160199341.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00275;product=hypothetical protein;protein_id=WP_160199341.1;transl_table=11 NZ_CP087677.1 RefSeq gene 46216 46291 . - . ID=gene-LPH39_RS00280;Name=LPH39_RS00280;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS00280;old_locus_tag=LPH39_00280 NZ_CP087677.1 tRNAscan-SE tRNA 46216 46291 . - . ID=rna-LPH39_RS00280;Parent=gene-LPH39_RS00280;anticodon=(pos:complement(46256..46258));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS00280;product=tRNA-Lys NZ_CP087677.1 tRNAscan-SE exon 46216 46291 . - . ID=exon-LPH39_RS00280-1;Parent=rna-LPH39_RS00280;anticodon=(pos:complement(46256..46258));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS00280;product=tRNA-Lys NZ_CP087677.1 RefSeq gene 46364 47032 . - . ID=gene-LPH39_RS00285;Name=queC;gbkey=Gene;gene=queC;gene_biotype=protein_coding;locus_tag=LPH39_RS00285;old_locus_tag=LPH39_00285 NZ_CP087677.1 Protein Homology CDS 46364 47032 . - 0 ID=cds-WP_038271631.1;Parent=gene-LPH39_RS00285;Dbxref=Genbank:WP_038271631.1;Name=WP_038271631.1;Ontology_term=GO:0008616;gbkey=CDS;gene=queC;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894324.1;locus_tag=LPH39_RS00285;product=7-cyano-7-deazaguanine synthase QueC;protein_id=WP_038271631.1;transl_table=11 NZ_CP087677.1 RefSeq gene 47887 49656 . + . ID=gene-LPH39_RS00290;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;locus_tag=LPH39_RS00290;old_locus_tag=LPH39_00290 NZ_CP087677.1 Protein Homology CDS 47887 49656 . + 0 ID=cds-WP_038271663.1;Parent=gene-LPH39_RS00290;Dbxref=Genbank:WP_038271663.1;Name=WP_038271663.1;Ontology_term=GO:0006418,GO:0000166,GO:0004812,GO:0005524,GO:0016874;gbkey=CDS;gene=aspS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089732.1;locus_tag=LPH39_RS00290;product=aspartate--tRNA ligase;protein_id=WP_038271663.1;transl_table=11 NZ_CP087677.1 RefSeq gene 49978 50805 . - . ID=gene-LPH39_RS00295;Name=LPH39_RS00295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00295;old_locus_tag=LPH39_00295 NZ_CP087677.1 Protein Homology CDS 49978 50805 . - 0 ID=cds-WP_038271629.1;Parent=gene-LPH39_RS00295;Dbxref=Genbank:WP_038271629.1;Name=WP_038271629.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF005395.0;locus_tag=LPH39_RS00295;product=SDR family oxidoreductase;protein_id=WP_038271629.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 50950 51242 . + . ID=gene-LPH39_RS00300;Name=LPH39_RS00300;end_range=51242,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS00300;old_locus_tag=LPH39_00300;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 50950 51242 . + 0 ID=cds-LPH39_RS00300;Parent=gene-LPH39_RS00300;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=51242,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015648284.1;locus_tag=LPH39_RS00300;partial=true;product=recombinase family protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 51269 52448 . + . ID=gene-LPH39_RS00305;Name=LPH39_RS00305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS00305;old_locus_tag=LPH39_00305;partial=true;pseudo=true;start_range=.,51269 NZ_CP087677.1 Protein Homology CDS 51269 52448 . + 0 ID=cds-LPH39_RS00305;Parent=gene-LPH39_RS00305;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014834018.1;locus_tag=LPH39_RS00305;partial=true;product=Tn3 family transposase;pseudo=true;start_range=.,51269;transl_table=11 NZ_CP087677.1 RefSeq gene 52492 54009 . - . ID=gene-LPH39_RS00310;Name=LPH39_RS00310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00310;old_locus_tag=LPH39_00310 NZ_CP087677.1 Protein Homology CDS 52492 54009 . - 0 ID=cds-WP_038271625.1;Parent=gene-LPH39_RS00310;Dbxref=Genbank:WP_038271625.1;Name=WP_038271625.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483539.1;locus_tag=LPH39_RS00310;product=fumarate hydratase;protein_id=WP_038271625.1;transl_table=11 NZ_CP087677.1 RefSeq gene 55331 56914 . - . ID=gene-LPH39_RS00315;Name=LPH39_RS00315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00315;old_locus_tag=LPH39_00315 NZ_CP087677.1 Protein Homology CDS 55331 56914 . - 0 ID=cds-WP_038271621.1;Parent=gene-LPH39_RS00315;Dbxref=Genbank:WP_038271621.1;Name=WP_038271621.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085579.1;locus_tag=LPH39_RS00315;product=S41 family peptidase;protein_id=WP_038271621.1;transl_table=11 NZ_CP087677.1 RefSeq gene 57748 57975 . + . ID=gene-LPH39_RS00320;Name=LPH39_RS00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00320;old_locus_tag=LPH39_00320 NZ_CP087677.1 GeneMarkS-2+ CDS 57748 57975 . + 0 ID=cds-WP_152536639.1;Parent=gene-LPH39_RS00320;Dbxref=Genbank:WP_152536639.1;Name=WP_152536639.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00320;product=hypothetical protein;protein_id=WP_152536639.1;transl_table=11 NZ_CP087677.1 RefSeq gene 58468 59247 . + . ID=gene-LPH39_RS00325;Name=xth;gbkey=Gene;gene=xth;gene_biotype=protein_coding;locus_tag=LPH39_RS00325;old_locus_tag=LPH39_00325 NZ_CP087677.1 Protein Homology CDS 58468 59247 . + 0 ID=cds-WP_038271660.1;Parent=gene-LPH39_RS00325;Dbxref=Genbank:WP_038271660.1;Name=WP_038271660.1;Ontology_term=GO:0006281,GO:0008853;gbkey=CDS;gene=xth;go_function=exodeoxyribonuclease III activity|0008853||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901808.1;locus_tag=LPH39_RS00325;product=exodeoxyribonuclease III;protein_id=WP_038271660.1;transl_table=11 NZ_CP087677.1 RefSeq gene 59578 60186 . + . ID=gene-LPH39_RS00330;Name=LPH39_RS00330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00330;old_locus_tag=LPH39_00330 NZ_CP087677.1 Protein Homology CDS 59578 60186 . + 0 ID=cds-WP_038271618.1;Parent=gene-LPH39_RS00330;Dbxref=Genbank:WP_038271618.1;Name=WP_038271618.1;Ontology_term=GO:0000287,GO:0008897;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,holo-[acyl-carrier-protein] synthase activity|0008897||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972828.1;locus_tag=LPH39_RS00330;product=4'-phosphopantetheinyl transferase superfamily protein;protein_id=WP_038271618.1;transl_table=11 NZ_CP087677.1 RefSeq gene 60398 61036 . + . ID=gene-LPH39_RS00335;Name=rsmG;gbkey=Gene;gene=rsmG;gene_biotype=protein_coding;locus_tag=LPH39_RS00335;old_locus_tag=LPH39_00335 NZ_CP087677.1 Protein Homology CDS 60398 61036 . + 0 ID=cds-WP_038271616.1;Parent=gene-LPH39_RS00335;Dbxref=Genbank:WP_038271616.1;Name=WP_038271616.1;Ontology_term=GO:0031167,GO:0046118,GO:0008168,GO:0005575;gbkey=CDS;gene=rsmG;go_component=cellular_component|0005575||IEA;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA,7-methylguanosine biosynthetic process|0046118||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914596.1;locus_tag=LPH39_RS00335;product=16S rRNA (guanine(527)-N(7))-methyltransferase RsmG;protein_id=WP_038271616.1;transl_table=11 NZ_CP087677.1 RefSeq gene 61107 63107 . - . ID=gene-LPH39_RS00340;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=LPH39_RS00340;old_locus_tag=LPH39_00340 NZ_CP087677.1 Protein Homology CDS 61107 63107 . - 0 ID=cds-WP_038271614.1;Parent=gene-LPH39_RS00340;Dbxref=Genbank:WP_038271614.1;Name=WP_038271614.1;Ontology_term=GO:0006098,GO:0004802,GO:0005737;gbkey=CDS;gene=tkt;go_component=cytoplasm|0005737||IEA;go_function=transketolase activity|0004802||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348449.1;locus_tag=LPH39_RS00340;product=transketolase;protein_id=WP_038271614.1;transl_table=11 NZ_CP087677.1 RefSeq gene 63213 64493 . - . ID=gene-LPH39_RS00345;Name=LPH39_RS00345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00345;old_locus_tag=LPH39_00345 NZ_CP087677.1 Protein Homology CDS 63213 64493 . - 0 ID=cds-WP_081755459.1;Parent=gene-LPH39_RS00345;Dbxref=Genbank:WP_081755459.1;Name=WP_081755459.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851384.1;locus_tag=LPH39_RS00345;product=dicarboxylate/amino acid:cation symporter;protein_id=WP_081755459.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 64758 64862 . + . ID=gene-LPH39_RS00350;Name=LPH39_RS00350;end_range=64862,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS00350;old_locus_tag=LPH39_00350;partial=true;pseudo=true;start_range=.,64758 NZ_CP087677.1 Protein Homology CDS 64758 64862 . + 0 ID=cds-LPH39_RS00350;Parent=gene-LPH39_RS00350;Note=maintains the balance of metabolites in the pentose-phosphate pathway%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=64862,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012479209.1;locus_tag=LPH39_RS00350;partial=true;product=transaldolase;pseudo=true;start_range=.,64758;transl_table=11 NZ_CP087677.1 RefSeq gene 64997 65647 . - . ID=gene-LPH39_RS00355;Name=msrA;gbkey=Gene;gene=msrA;gene_biotype=protein_coding;locus_tag=LPH39_RS00355;old_locus_tag=LPH39_00355 NZ_CP087677.1 Protein Homology CDS 64997 65647 . - 0 ID=cds-WP_038271658.1;Parent=gene-LPH39_RS00355;Dbxref=Genbank:WP_038271658.1;Name=WP_038271658.1;Ontology_term=GO:0006979,GO:0030091,GO:0008113,GO:0033744;gbkey=CDS;gene=msrA;go_function=peptide-methionine (S)-S-oxide reductase activity|0008113||IEA,L-methionine:thioredoxin-disulfide S-oxidoreductase activity|0033744||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009577520.1;locus_tag=LPH39_RS00355;product=peptide-methionine (S)-S-oxide reductase MsrA;protein_id=WP_038271658.1;transl_table=11 NZ_CP087677.1 RefSeq gene 65760 66254 . - . ID=gene-LPH39_RS00360;Name=LPH39_RS00360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00360;old_locus_tag=LPH39_00360 NZ_CP087677.1 Protein Homology CDS 65760 66254 . - 0 ID=cds-WP_038271655.1;Parent=gene-LPH39_RS00360;Dbxref=Genbank:WP_038271655.1;Name=WP_038271655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085447.1;locus_tag=LPH39_RS00360;product=SgcJ/EcaC family oxidoreductase;protein_id=WP_038271655.1;transl_table=11 NZ_CP087677.1 RefSeq gene 67718 68110 . + . ID=gene-LPH39_RS00365;Name=LPH39_RS00365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00365;old_locus_tag=LPH39_00365 NZ_CP087677.1 Protein Homology CDS 67718 68110 . + 0 ID=cds-WP_038271652.1;Parent=gene-LPH39_RS00365;Dbxref=Genbank:WP_038271652.1;Name=WP_038271652.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502532.1;locus_tag=LPH39_RS00365;product=HU family DNA-binding protein;protein_id=WP_038271652.1;transl_table=11 NZ_CP087677.1 RefSeq gene 69507 71666 . + . ID=gene-LPH39_RS00370;Name=dcp;gbkey=Gene;gene=dcp;gene_biotype=protein_coding;locus_tag=LPH39_RS00370;old_locus_tag=LPH39_00370 NZ_CP087677.1 Protein Homology CDS 69507 71666 . + 0 ID=cds-WP_038271650.1;Parent=gene-LPH39_RS00370;Dbxref=Genbank:WP_038271650.1;Name=WP_038271650.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=dcp;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008266515.1;locus_tag=LPH39_RS00370;product=peptidyl-dipeptidase Dcp;protein_id=WP_038271650.1;transl_table=11 NZ_CP087677.1 RefSeq gene 71752 72159 . - . ID=gene-LPH39_RS00375;Name=LPH39_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00375;old_locus_tag=LPH39_00375 NZ_CP087677.1 Protein Homology CDS 71752 72159 . - 0 ID=cds-WP_230428287.1;Parent=gene-LPH39_RS00375;Dbxref=Genbank:WP_230428287.1;Name=WP_230428287.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894407.1;locus_tag=LPH39_RS00375;product=VirK family protein;protein_id=WP_230428287.1;transl_table=11 NZ_CP087677.1 RefSeq gene 73194 74492 . + . ID=gene-LPH39_RS00380;Name=folC;gbkey=Gene;gene=folC;gene_biotype=protein_coding;locus_tag=LPH39_RS00380;old_locus_tag=LPH39_00380 NZ_CP087677.1 Protein Homology CDS 73194 74492 . + 0 ID=cds-WP_038271605.1;Parent=gene-LPH39_RS00380;Dbxref=Genbank:WP_038271605.1;Name=WP_038271605.1;Ontology_term=GO:0009396,GO:0004326,GO:0005524,GO:0016874;gbkey=CDS;gene=folC;go_function=tetrahydrofolylpolyglutamate synthase activity|0004326||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085450.1;locus_tag=LPH39_RS00380;product=bifunctional tetrahydrofolate synthase/dihydrofolate synthase;protein_id=WP_038271605.1;transl_table=11 NZ_CP087677.1 RefSeq gene 74531 75535 . + . ID=gene-LPH39_RS00385;Name=LPH39_RS00385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00385;old_locus_tag=LPH39_00385 NZ_CP087677.1 Protein Homology CDS 74531 75535 . + 0 ID=cds-WP_038271603.1;Parent=gene-LPH39_RS00385;Dbxref=Genbank:WP_038271603.1;Name=WP_038271603.1;Ontology_term=GO:0042834;gbkey=CDS;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301876.1;locus_tag=LPH39_RS00385;product=SPOR domain-containing protein;protein_id=WP_038271603.1;transl_table=11 NZ_CP087677.1 RefSeq gene 75612 76145 . + . ID=gene-LPH39_RS00390;Name=LPH39_RS00390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00390;old_locus_tag=LPH39_00390 NZ_CP087677.1 Protein Homology CDS 75612 76145 . + 0 ID=cds-WP_081755458.1;Parent=gene-LPH39_RS00390;Dbxref=Genbank:WP_081755458.1;Name=WP_081755458.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894410.1;locus_tag=LPH39_RS00390;product=CvpA family protein;protein_id=WP_081755458.1;transl_table=11 NZ_CP087677.1 RefSeq gene 76288 77745 . + . ID=gene-LPH39_RS00395;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;locus_tag=LPH39_RS00395;old_locus_tag=LPH39_00395 NZ_CP087677.1 Protein Homology CDS 76288 77745 . + 0 ID=cds-WP_038271601.1;Parent=gene-LPH39_RS00395;Dbxref=Genbank:WP_038271601.1;Name=WP_038271601.1;Ontology_term=GO:0009152,GO:0004044;gbkey=CDS;gene=purF;go_function=amidophosphoribosyltransferase activity|0004044||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085453.1;locus_tag=LPH39_RS00395;product=amidophosphoribosyltransferase;protein_id=WP_038271601.1;transl_table=11 NZ_CP087677.1 RefSeq gene 78472 78984 . - . ID=gene-LPH39_RS00400;Name=LPH39_RS00400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00400;old_locus_tag=LPH39_00400 NZ_CP087677.1 Protein Homology CDS 78472 78984 . - 0 ID=cds-WP_051482345.1;Parent=gene-LPH39_RS00400;Dbxref=Genbank:WP_051482345.1;Name=WP_051482345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085454.1;locus_tag=LPH39_RS00400;product=chemotaxis protein CheW;protein_id=WP_051482345.1;transl_table=11 NZ_CP087677.1 RefSeq gene 79006 80211 . - . ID=gene-LPH39_RS00405;Name=LPH39_RS00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00405;old_locus_tag=LPH39_00405 NZ_CP087677.1 Protein Homology CDS 79006 80211 . - 0 ID=cds-WP_038271598.1;Parent=gene-LPH39_RS00405;Dbxref=Genbank:WP_038271598.1;Name=WP_038271598.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852974.1;locus_tag=LPH39_RS00405;product=glutamate methyltransferase;protein_id=WP_038271598.1;transl_table=11 NZ_CP087677.1 RefSeq gene 80198 85456 . - . ID=gene-LPH39_RS00410;Name=LPH39_RS00410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00410;old_locus_tag=LPH39_00410 NZ_CP087677.1 Protein Homology CDS 80198 85456 . - 0 ID=cds-WP_038271596.1;Parent=gene-LPH39_RS00410;Dbxref=Genbank:WP_038271596.1;Name=WP_038271596.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572849.1;locus_tag=LPH39_RS00410;product=Hpt domain-containing protein;protein_id=WP_038271596.1;transl_table=11 NZ_CP087677.1 RefSeq gene 85563 87605 . - . ID=gene-LPH39_RS00415;Name=LPH39_RS00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00415;old_locus_tag=LPH39_00415 NZ_CP087677.1 Protein Homology CDS 85563 87605 . - 0 ID=cds-WP_038271594.1;Parent=gene-LPH39_RS00415;Dbxref=Genbank:WP_038271594.1;Name=WP_038271594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988635.1;locus_tag=LPH39_RS00415;product=methyl-accepting chemotaxis protein;protein_id=WP_038271594.1;transl_table=11 NZ_CP087677.1 RefSeq gene 87645 88175 . - . ID=gene-LPH39_RS00420;Name=LPH39_RS00420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00420;old_locus_tag=LPH39_00420 NZ_CP087677.1 Protein Homology CDS 87645 88175 . - 0 ID=cds-WP_038271592.1;Parent=gene-LPH39_RS00420;Dbxref=Genbank:WP_038271592.1;Name=WP_038271592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508568.1;locus_tag=LPH39_RS00420;product=chemotaxis protein CheW;protein_id=WP_038271592.1;transl_table=11 NZ_CP087677.1 RefSeq gene 88192 88608 . - . ID=gene-LPH39_RS00425;Name=LPH39_RS00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00425;old_locus_tag=LPH39_00425 NZ_CP087677.1 Protein Homology CDS 88192 88608 . - 0 ID=cds-WP_038271642.1;Parent=gene-LPH39_RS00425;Dbxref=Genbank:WP_038271642.1;Name=WP_038271642.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085459.1;locus_tag=LPH39_RS00425;product=response regulator;protein_id=WP_038271642.1;transl_table=11 NZ_CP087677.1 RefSeq gene 88878 89822 . + . ID=gene-LPH39_RS00430;Name=gshB;gbkey=Gene;gene=gshB;gene_biotype=protein_coding;locus_tag=LPH39_RS00430;old_locus_tag=LPH39_00430 NZ_CP087677.1 Protein Homology CDS 88878 89822 . + 0 ID=cds-WP_038271589.1;Parent=gene-LPH39_RS00430;Dbxref=Genbank:WP_038271589.1;Name=WP_038271589.1;Ontology_term=GO:0006750,GO:0004363;gbkey=CDS;gene=gshB;go_function=glutathione synthase activity|0004363||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894415.1;locus_tag=LPH39_RS00430;product=glutathione synthase;protein_id=WP_038271589.1;transl_table=11 NZ_CP087677.1 RefSeq gene 89824 90699 . + . ID=gene-LPH39_RS00435;Name=LPH39_RS00435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00435;old_locus_tag=LPH39_00435 NZ_CP087677.1 Protein Homology CDS 89824 90699 . + 0 ID=cds-WP_038271586.1;Parent=gene-LPH39_RS00435;Dbxref=Genbank:WP_038271586.1;Name=WP_038271586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382557.1;locus_tag=LPH39_RS00435;product=energy transducer TonB;protein_id=WP_038271586.1;transl_table=11 NZ_CP087677.1 RefSeq gene 91083 91892 . + . ID=gene-LPH39_RS00440;Name=LPH39_RS00440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00440;old_locus_tag=LPH39_00440 NZ_CP087677.1 Protein Homology CDS 91083 91892 . + 0 ID=cds-WP_038271584.1;Parent=gene-LPH39_RS00440;Dbxref=Genbank:WP_038271584.1;Name=WP_038271584.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097814.1;locus_tag=LPH39_RS00440;product=DUF6216 family protein;protein_id=WP_038271584.1;transl_table=11 NZ_CP087677.1 RefSeq gene 92603 94759 . - . ID=gene-LPH39_RS00445;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=LPH39_RS00445;old_locus_tag=LPH39_00445 NZ_CP087677.1 Protein Homology CDS 92603 94759 . - 0 ID=cds-WP_038271582.1;Parent=gene-LPH39_RS00445;Dbxref=Genbank:WP_038271582.1;Name=WP_038271582.1;Ontology_term=GO:0006426,GO:0004820,GO:0009345;gbkey=CDS;gene=glyS;go_component=glycine-tRNA ligase complex|0009345||IEA;go_function=glycine-tRNA ligase activity|0004820||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039155.1;locus_tag=LPH39_RS00445;product=glycine--tRNA ligase subunit beta;protein_id=WP_038271582.1;transl_table=11 NZ_CP087677.1 RefSeq gene 94850 95773 . - . ID=gene-LPH39_RS00450;Name=glyQ;gbkey=Gene;gene=glyQ;gene_biotype=protein_coding;locus_tag=LPH39_RS00450;old_locus_tag=LPH39_00450 NZ_CP087677.1 Protein Homology CDS 94850 95773 . - 0 ID=cds-WP_038271580.1;Parent=gene-LPH39_RS00450;Dbxref=Genbank:WP_038271580.1;Name=WP_038271580.1;Ontology_term=GO:0006426,GO:0004820,GO:0009345;gbkey=CDS;gene=glyQ;go_component=glycine-tRNA ligase complex|0009345||IEA;go_function=glycine-tRNA ligase activity|0004820||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156064.1;locus_tag=LPH39_RS00450;product=glycine--tRNA ligase subunit alpha;protein_id=WP_038271580.1;transl_table=11 NZ_CP087677.1 RefSeq gene 96110 97747 . - . ID=gene-LPH39_RS00455;Name=LPH39_RS00455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00455;old_locus_tag=LPH39_00455 NZ_CP087677.1 Protein Homology CDS 96110 97747 . - 0 ID=cds-WP_038271579.1;Parent=gene-LPH39_RS00455;Dbxref=Genbank:WP_038271579.1;Name=WP_038271579.1;Ontology_term=GO:0009435,GO:0003952,GO:0005524;gbkey=CDS;go_function=NAD+ synthase (glutamine-hydrolyzing) activity|0003952||IEA,ATP binding|0005524||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337819.1;locus_tag=LPH39_RS00455;product=NAD+ synthase;protein_id=WP_038271579.1;transl_table=11 NZ_CP087677.1 RefSeq gene 98293 98712 . - . ID=gene-LPH39_RS00460;Name=LPH39_RS00460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00460;old_locus_tag=LPH39_00460 NZ_CP087677.1 GeneMarkS-2+ CDS 98293 98712 . - 0 ID=cds-WP_152536638.1;Parent=gene-LPH39_RS00460;Dbxref=Genbank:WP_152536638.1;Name=WP_152536638.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00460;product=hypothetical protein;protein_id=WP_152536638.1;transl_table=11 NZ_CP087677.1 RefSeq gene 98657 98995 . - . ID=gene-LPH39_RS00465;Name=LPH39_RS00465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00465;old_locus_tag=LPH39_00465 NZ_CP087677.1 GeneMarkS-2+ CDS 98657 98995 . - 0 ID=cds-WP_152536637.1;Parent=gene-LPH39_RS00465;Dbxref=Genbank:WP_152536637.1;Name=WP_152536637.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00465;product=hypothetical protein;protein_id=WP_152536637.1;transl_table=11 NZ_CP087677.1 RefSeq gene 99149 99304 . - . ID=gene-LPH39_RS00470;Name=LPH39_RS00470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00470;old_locus_tag=LPH39_00470 NZ_CP087677.1 GeneMarkS-2+ CDS 99149 99304 . - 0 ID=cds-WP_160165192.1;Parent=gene-LPH39_RS00470;Dbxref=Genbank:WP_160165192.1;Name=WP_160165192.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00470;product=hypothetical protein;protein_id=WP_160165192.1;transl_table=11 NZ_CP087677.1 RefSeq gene 99480 99863 . + . ID=gene-LPH39_RS00475;Name=LPH39_RS00475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00475;old_locus_tag=LPH39_00475 NZ_CP087677.1 Protein Homology CDS 99480 99863 . + 0 ID=cds-WP_038271578.1;Parent=gene-LPH39_RS00475;Dbxref=Genbank:WP_038271578.1;Name=WP_038271578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894423.1;locus_tag=LPH39_RS00475;product=YkgJ family cysteine cluster protein;protein_id=WP_038271578.1;transl_table=11 NZ_CP087677.1 RefSeq gene 99860 100003 . - . ID=gene-LPH39_RS00480;Name=LPH39_RS00480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00480;old_locus_tag=LPH39_00480 NZ_CP087677.1 GeneMarkS-2+ CDS 99860 100003 . - 0 ID=cds-WP_230428503.1;Parent=gene-LPH39_RS00480;Dbxref=Genbank:WP_230428503.1;Name=WP_230428503.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00480;product=hypothetical protein;protein_id=WP_230428503.1;transl_table=11 NZ_CP087677.1 RefSeq gene 100062 100283 . - . ID=gene-LPH39_RS00485;Name=LPH39_RS00485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00485;old_locus_tag=LPH39_00485 NZ_CP087677.1 GeneMarkS-2+ CDS 100062 100283 . - 0 ID=cds-WP_152536635.1;Parent=gene-LPH39_RS00485;Dbxref=Genbank:WP_152536635.1;Name=WP_152536635.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00485;product=hypothetical protein;protein_id=WP_152536635.1;transl_table=11 NZ_CP087677.1 RefSeq gene 100505 101416 . - . ID=gene-LPH39_RS00490;Name=LPH39_RS00490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00490;old_locus_tag=LPH39_00490 NZ_CP087677.1 Protein Homology CDS 100505 101416 . - 0 ID=cds-WP_038271576.1;Parent=gene-LPH39_RS00490;Dbxref=Genbank:WP_038271576.1;Name=WP_038271576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572841.1;locus_tag=LPH39_RS00490;product=alpha/beta fold hydrolase;protein_id=WP_038271576.1;transl_table=11 NZ_CP087677.1 RefSeq gene 101413 102339 . - . ID=gene-LPH39_RS00495;Name=LPH39_RS00495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00495;old_locus_tag=LPH39_00495 NZ_CP087677.1 GeneMarkS-2+ CDS 101413 102339 . - 0 ID=cds-WP_230428214.1;Parent=gene-LPH39_RS00495;Dbxref=Genbank:WP_230428214.1;Name=WP_230428214.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00495;product=hypothetical protein;protein_id=WP_230428214.1;transl_table=11 NZ_CP087677.1 RefSeq gene 102375 103391 . - . ID=gene-LPH39_RS00500;Name=LPH39_RS00500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00500;old_locus_tag=LPH39_00500 NZ_CP087677.1 Protein Homology CDS 102375 103391 . - 0 ID=cds-WP_038271575.1;Parent=gene-LPH39_RS00500;Dbxref=Genbank:WP_038271575.1;Name=WP_038271575.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809874.1;locus_tag=LPH39_RS00500;product=3-oxoacyl-ACP synthase III;protein_id=WP_038271575.1;transl_table=11 NZ_CP087677.1 RefSeq gene 103498 103818 . - . ID=gene-LPH39_RS00505;Name=LPH39_RS00505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00505;old_locus_tag=LPH39_00505 NZ_CP087677.1 Protein Homology CDS 103498 103818 . - 0 ID=cds-WP_038271574.1;Parent=gene-LPH39_RS00505;Dbxref=Genbank:WP_038271574.1;Name=WP_038271574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488921.1;locus_tag=LPH39_RS00505;product=DUF4156 domain-containing protein;protein_id=WP_038271574.1;transl_table=11 NZ_CP087677.1 RefSeq gene 104095 104595 . + . ID=gene-LPH39_RS00510;Name=LPH39_RS00510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00510;old_locus_tag=LPH39_00510 NZ_CP087677.1 Protein Homology CDS 104095 104595 . + 0 ID=cds-WP_038271638.1;Parent=gene-LPH39_RS00510;Dbxref=Genbank:WP_038271638.1;Name=WP_038271638.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085473.1;locus_tag=LPH39_RS00510;product=tRNA (cytidine(34)-2'-O)-methyltransferase;protein_id=WP_038271638.1;transl_table=11 NZ_CP087677.1 RefSeq gene 104787 105068 . - . ID=gene-LPH39_RS00515;Name=LPH39_RS00515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00515;old_locus_tag=LPH39_00515 NZ_CP087677.1 GeneMarkS-2+ CDS 104787 105068 . - 0 ID=cds-WP_152536634.1;Parent=gene-LPH39_RS00515;Dbxref=Genbank:WP_152536634.1;Name=WP_152536634.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00515;product=hypothetical protein;protein_id=WP_152536634.1;transl_table=11 NZ_CP087677.1 RefSeq gene 105825 107408 . + . ID=gene-LPH39_RS00520;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=LPH39_RS00520;old_locus_tag=LPH39_00520 NZ_CP087677.1 Protein Homology CDS 105825 107408 . + 0 ID=cds-WP_038271569.1;Parent=gene-LPH39_RS00520;Dbxref=Genbank:WP_038271569.1;Name=WP_038271569.1;Ontology_term=GO:0006164,GO:0006189,GO:0003824,GO:0003937,GO:0004643;gbkey=CDS;gene=purH;go_function=catalytic activity|0003824||IEA,IMP cyclohydrolase activity|0003937||IEA,phosphoribosylaminoimidazolecarboxamide formyltransferase activity|0004643||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA,'de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302295.1;locus_tag=LPH39_RS00520;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;protein_id=WP_038271569.1;transl_table=11 NZ_CP087677.1 RefSeq gene 108306 109595 . + . ID=gene-LPH39_RS00525;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=LPH39_RS00525;old_locus_tag=LPH39_00525 NZ_CP087677.1 Protein Homology CDS 108306 109595 . + 0 ID=cds-WP_038271566.1;Parent=gene-LPH39_RS00525;Dbxref=Genbank:WP_038271566.1;Name=WP_038271566.1;Ontology_term=GO:0006189,GO:0009152,GO:0004637;gbkey=CDS;gene=purD;go_function=phosphoribosylamine-glycine ligase activity|0004637||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346194.1;locus_tag=LPH39_RS00525;product=phosphoribosylamine--glycine ligase;protein_id=WP_038271566.1;transl_table=11 NZ_CP087677.1 RefSeq gene 109697 109927 . - . ID=gene-LPH39_RS00530;Name=LPH39_RS00530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00530;old_locus_tag=LPH39_00530 NZ_CP087677.1 GeneMarkS-2+ CDS 109697 109927 . - 0 ID=cds-WP_152536633.1;Parent=gene-LPH39_RS00530;Dbxref=Genbank:WP_152536633.1;Name=WP_152536633.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00530;product=hypothetical protein;protein_id=WP_152536633.1;transl_table=11 NZ_CP087677.1 RefSeq gene 110047 110175 . - . ID=gene-LPH39_RS11935;Name=LPH39_RS11935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11935 NZ_CP087677.1 GeneMarkS-2+ CDS 110047 110175 . - 0 ID=cds-WP_267903149.1;Parent=gene-LPH39_RS11935;Dbxref=Genbank:WP_267903149.1;Name=WP_267903149.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11935;product=hypothetical protein;protein_id=WP_267903149.1;transl_table=11 NZ_CP087677.1 RefSeq gene 110233 111009 . + . ID=gene-LPH39_RS00535;Name=LPH39_RS00535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00535;old_locus_tag=LPH39_00535 NZ_CP087677.1 GeneMarkS-2+ CDS 110233 111009 . + 0 ID=cds-WP_152536632.1;Parent=gene-LPH39_RS00535;Dbxref=Genbank:WP_152536632.1;Name=WP_152536632.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00535;product=hypothetical protein;protein_id=WP_152536632.1;transl_table=11 NZ_CP087677.1 RefSeq gene 111006 111593 . + . ID=gene-LPH39_RS00540;Name=LPH39_RS00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00540;old_locus_tag=LPH39_00540 NZ_CP087677.1 GeneMarkS-2+ CDS 111006 111593 . + 0 ID=cds-WP_152536631.1;Parent=gene-LPH39_RS00540;Dbxref=Genbank:WP_152536631.1;Name=WP_152536631.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00540;product=hypothetical protein;protein_id=WP_152536631.1;transl_table=11 NZ_CP087677.1 RefSeq gene 111680 113809 . + . ID=gene-LPH39_RS00545;Name=yccS;gbkey=Gene;gene=yccS;gene_biotype=protein_coding;locus_tag=LPH39_RS00545;old_locus_tag=LPH39_00545 NZ_CP087677.1 Protein Homology CDS 111680 113809 . + 0 ID=cds-WP_230428288.1;Parent=gene-LPH39_RS00545;Dbxref=Genbank:WP_230428288.1;Name=WP_230428288.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yccS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607717.1;locus_tag=LPH39_RS00545;product=YccS family putative transporter;protein_id=WP_230428288.1;transl_table=11 NZ_CP087677.1 RefSeq gene 114882 115199 . - . ID=gene-LPH39_RS00550;Name=LPH39_RS00550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00550;old_locus_tag=LPH39_00550 NZ_CP087677.1 Protein Homology CDS 114882 115199 . - 0 ID=cds-WP_051482342.1;Parent=gene-LPH39_RS00550;Dbxref=Genbank:WP_051482342.1;Name=WP_051482342.1;Ontology_term=GO:0009307,GO:0009036;gbkey=CDS;go_function=type II site-specific deoxyribonuclease activity|0009036||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: protein motif:HMM:NF020757.2;locus_tag=LPH39_RS00550;product=BglII/BstYI family type II restriction endonuclease;protein_id=WP_051482342.1;transl_table=11 NZ_CP087677.1 RefSeq gene 115523 116416 . - . ID=gene-LPH39_RS00555;Name=ampE;gbkey=Gene;gene=ampE;gene_biotype=protein_coding;locus_tag=LPH39_RS00555;old_locus_tag=LPH39_00555 NZ_CP087677.1 Protein Homology CDS 115523 116416 . - 0 ID=cds-WP_038271558.1;Parent=gene-LPH39_RS00555;Dbxref=Genbank:WP_038271558.1;Name=WP_038271558.1;gbkey=CDS;gene=ampE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337811.1;locus_tag=LPH39_RS00555;product=regulatory signaling modulator protein AmpE;protein_id=WP_038271558.1;transl_table=11 NZ_CP087677.1 RefSeq gene 117441 121091 . - . ID=gene-LPH39_RS00560;Name=LPH39_RS00560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00560;old_locus_tag=LPH39_00560 NZ_CP087677.1 Protein Homology CDS 117441 121091 . - 0 ID=cds-WP_114867132.1;Parent=gene-LPH39_RS00560;Dbxref=Genbank:WP_114867132.1;Name=WP_114867132.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337810.1;locus_tag=LPH39_RS00560;product=YadA-like family protein;protein_id=WP_114867132.1;transl_table=11 NZ_CP087677.1 RefSeq gene 122169 122771 . + . ID=gene-LPH39_RS00565;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=LPH39_RS00565;old_locus_tag=LPH39_00565 NZ_CP087677.1 Protein Homology CDS 122169 122771 . + 0 ID=cds-WP_038273009.1;Parent=gene-LPH39_RS00565;Dbxref=Genbank:WP_038273009.1;Name=WP_038273009.1;Ontology_term=GO:0042559,GO:0046654,GO:0003934;gbkey=CDS;gene=folE;go_function=GTP cyclohydrolase I activity|0003934||IEA;go_process=pteridine-containing compound biosynthetic process|0042559||IEA,tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158364.1;locus_tag=LPH39_RS00565;product=GTP cyclohydrolase I FolE;protein_id=WP_038273009.1;transl_table=11 NZ_CP087677.1 RefSeq gene 122862 123092 . - . ID=gene-LPH39_RS00570;Name=LPH39_RS00570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00570;old_locus_tag=LPH39_00570 NZ_CP087677.1 GeneMarkS-2+ CDS 122862 123092 . - 0 ID=cds-WP_160199342.1;Parent=gene-LPH39_RS00570;Dbxref=Genbank:WP_160199342.1;Name=WP_160199342.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00570;product=hypothetical protein;protein_id=WP_160199342.1;transl_table=11 NZ_CP087677.1 RefSeq gene 123442 124020 . + . ID=gene-LPH39_RS00575;Name=LPH39_RS00575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00575;old_locus_tag=LPH39_00575 NZ_CP087677.1 Protein Homology CDS 123442 124020 . + 0 ID=cds-WP_038273004.1;Parent=gene-LPH39_RS00575;Dbxref=Genbank:WP_038273004.1;Name=WP_038273004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091135.1;locus_tag=LPH39_RS00575;product=gamma carbonic anhydrase family protein;protein_id=WP_038273004.1;transl_table=11 NZ_CP087677.1 RefSeq gene 125071 125820 . - . ID=gene-LPH39_RS00580;Name=rlmB;gbkey=Gene;gene=rlmB;gene_biotype=protein_coding;locus_tag=LPH39_RS00580;old_locus_tag=LPH39_00580 NZ_CP087677.1 Protein Homology CDS 125071 125820 . - 0 ID=cds-WP_038273001.1;Parent=gene-LPH39_RS00580;Dbxref=Genbank:WP_038273001.1;Name=WP_038273001.1;Ontology_term=GO:0009451,GO:0008173;gbkey=CDS;gene=rlmB;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894443.1;locus_tag=LPH39_RS00580;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=WP_038273001.1;transl_table=11 NZ_CP087677.1 RefSeq gene 126204 128732 . - . ID=gene-LPH39_RS00585;Name=rnr;gbkey=Gene;gene=rnr;gene_biotype=protein_coding;locus_tag=LPH39_RS00585;old_locus_tag=LPH39_00585 NZ_CP087677.1 Protein Homology CDS 126204 128732 . - 0 ID=cds-WP_038272997.1;Parent=gene-LPH39_RS00585;Dbxref=Genbank:WP_038272997.1;Name=WP_038272997.1;Ontology_term=GO:0006401,GO:0008997;gbkey=CDS;gene=rnr;go_function=ribonuclease R activity|0008997||IEA;go_process=RNA catabolic process|0006401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851070.1;locus_tag=LPH39_RS00585;product=ribonuclease R;protein_id=WP_038272997.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 129839 130315 . + . ID=gene-LPH39_RS00590;Name=LPH39_RS00590;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS00590;old_locus_tag=LPH39_00590;partial=true;pseudo=true;start_range=.,129839 NZ_CP087677.1 Protein Homology CDS 129839 130315 . + 0 ID=cds-LPH39_RS00590;Parent=gene-LPH39_RS00590;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090827.1;locus_tag=LPH39_RS00590;partial=true;product=BRO family protein;pseudo=true;start_range=.,129839;transl_table=11 NZ_CP087677.1 RefSeq gene 130507 131016 . + . ID=gene-LPH39_RS00595;Name=LPH39_RS00595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00595;old_locus_tag=LPH39_00595 NZ_CP087677.1 Protein Homology CDS 130507 131016 . + 0 ID=cds-WP_114867133.1;Parent=gene-LPH39_RS00595;Dbxref=Genbank:WP_114867133.1;Name=WP_114867133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894761.1;locus_tag=LPH39_RS00595;product=lysozyme;protein_id=WP_114867133.1;transl_table=11 NZ_CP087677.1 RefSeq gene 131009 131335 . + . ID=gene-LPH39_RS00600;Name=LPH39_RS00600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00600;old_locus_tag=LPH39_00600 NZ_CP087677.1 Protein Homology CDS 131009 131335 . + 0 ID=cds-WP_038272608.1;Parent=gene-LPH39_RS00600;Dbxref=Genbank:WP_038272608.1;Name=WP_038272608.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852373.1;locus_tag=LPH39_RS00600;product=phage holin family protein;protein_id=WP_038272608.1;transl_table=11 NZ_CP087677.1 RefSeq gene 131325 131786 . + . ID=gene-LPH39_RS00605;Name=LPH39_RS00605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00605;old_locus_tag=LPH39_00605 NZ_CP087677.1 Protein Homology CDS 131325 131786 . + 0 ID=cds-WP_038272730.1;Parent=gene-LPH39_RS00605;Dbxref=Genbank:WP_038272730.1;Name=WP_038272730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086887.1;locus_tag=LPH39_RS00605;product=hypothetical protein;protein_id=WP_038272730.1;transl_table=11 NZ_CP087677.1 RefSeq gene 131788 132003 . + . ID=gene-LPH39_RS00610;Name=LPH39_RS00610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00610;old_locus_tag=LPH39_00610 NZ_CP087677.1 Protein Homology CDS 131788 132003 . + 0 ID=cds-WP_038272603.1;Parent=gene-LPH39_RS00610;Dbxref=Genbank:WP_038272603.1;Name=WP_038272603.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085111.1;locus_tag=LPH39_RS00610;product=hypothetical protein;protein_id=WP_038272603.1;transl_table=11 NZ_CP087677.1 RefSeq gene 132008 132541 . + . ID=gene-LPH39_RS00615;Name=LPH39_RS00615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00615;old_locus_tag=LPH39_00615 NZ_CP087677.1 GeneMarkS-2+ CDS 132008 132541 . + 0 ID=cds-WP_051482374.1;Parent=gene-LPH39_RS00615;Dbxref=Genbank:WP_051482374.1;Name=WP_051482374.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00615;product=glycosyltransferase family A protein;protein_id=WP_051482374.1;transl_table=11 NZ_CP087677.1 RefSeq gene 132534 133040 . + . ID=gene-LPH39_RS00620;Name=LPH39_RS00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00620;old_locus_tag=LPH39_00620 NZ_CP087677.1 GeneMarkS-2+ CDS 132534 133040 . + 0 ID=cds-WP_038272601.1;Parent=gene-LPH39_RS00620;Dbxref=Genbank:WP_038272601.1;Name=WP_038272601.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00620;product=hypothetical protein;protein_id=WP_038272601.1;transl_table=11 NZ_CP087677.1 RefSeq gene 133037 133870 . + . ID=gene-LPH39_RS00625;Name=LPH39_RS00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00625;old_locus_tag=LPH39_00625 NZ_CP087677.1 Protein Homology CDS 133037 133870 . + 0 ID=cds-WP_200866213.1;Parent=gene-LPH39_RS00625;Dbxref=Genbank:WP_200866213.1;Name=WP_200866213.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF028088.2;locus_tag=LPH39_RS00625;product=tail fiber assembly protein;protein_id=WP_200866213.1;transl_table=11 NZ_CP087677.1 RefSeq gene 134080 134382 . + . ID=gene-LPH39_RS00630;Name=LPH39_RS00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00630;old_locus_tag=LPH39_00630 NZ_CP087677.1 Protein Homology CDS 134080 134382 . + 0 ID=cds-WP_038272599.1;Parent=gene-LPH39_RS00630;Dbxref=Genbank:WP_038272599.1;Name=WP_038272599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574518.1;locus_tag=LPH39_RS00630;product=type II toxin-antitoxin system HigB family toxin;protein_id=WP_038272599.1;transl_table=11 NZ_CP087677.1 RefSeq gene 134386 134757 . + . ID=gene-LPH39_RS00635;Name=LPH39_RS00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00635;old_locus_tag=LPH39_00635 NZ_CP087677.1 Protein Homology CDS 134386 134757 . + 0 ID=cds-WP_230428215.1;Parent=gene-LPH39_RS00635;Dbxref=Genbank:WP_230428215.1;Name=WP_230428215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008208406.1;locus_tag=LPH39_RS00635;product=transcriptional regulator;protein_id=WP_230428215.1;transl_table=11 NZ_CP087677.1 RefSeq gene 135106 135396 . + . ID=gene-LPH39_RS00640;Name=LPH39_RS00640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00640;old_locus_tag=LPH39_00640 NZ_CP087677.1 GeneMarkS-2+ CDS 135106 135396 . + 0 ID=cds-WP_152536656.1;Parent=gene-LPH39_RS00640;Dbxref=Genbank:WP_152536656.1;Name=WP_152536656.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00640;product=hypothetical protein;protein_id=WP_152536656.1;transl_table=11 NZ_CP087677.1 RefSeq gene 135416 135637 . + . ID=gene-LPH39_RS00645;Name=LPH39_RS00645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00645;old_locus_tag=LPH39_00645 NZ_CP087677.1 Protein Homology CDS 135416 135637 . + 0 ID=cds-WP_038272593.1;Parent=gene-LPH39_RS00645;Dbxref=Genbank:WP_038272593.1;Name=WP_038272593.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088612.1;locus_tag=LPH39_RS00645;product=EexN family lipoprotein;protein_id=WP_038272593.1;transl_table=11 NZ_CP087677.1 RefSeq gene 136496 136723 . + . ID=gene-LPH39_RS00650;Name=LPH39_RS00650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00650;old_locus_tag=LPH39_00650 NZ_CP087677.1 Protein Homology CDS 136496 136723 . + 0 ID=cds-WP_038272591.1;Parent=gene-LPH39_RS00650;Dbxref=Genbank:WP_038272591.1;Name=WP_038272591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157548.1;locus_tag=LPH39_RS00650;product=hypothetical protein;protein_id=WP_038272591.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 136842 139167 . + . ID=gene-LPH39_RS00655;Name=LPH39_RS00655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS00655;old_locus_tag=LPH39_00655;pseudo=true NZ_CP087677.1 Protein Homology CDS 136842 139167 . + 0 ID=cds-LPH39_RS00655;Parent=gene-LPH39_RS00655;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851372.1;locus_tag=LPH39_RS00655;product=Tex family protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 140121 140273 . + . ID=gene-LPH39_RS00660;Name=LPH39_RS00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00660;old_locus_tag=LPH39_00660 NZ_CP087677.1 GeneMarkS-2+ CDS 140121 140273 . + 0 ID=cds-WP_201745808.1;Parent=gene-LPH39_RS00660;Dbxref=Genbank:WP_201745808.1;Name=WP_201745808.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00660;product=hypothetical protein;protein_id=WP_201745808.1;transl_table=11 NZ_CP087677.1 RefSeq gene 140346 140537 . - . ID=gene-LPH39_RS00665;Name=LPH39_RS00665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00665;old_locus_tag=LPH39_00665 NZ_CP087677.1 GeneMarkS-2+ CDS 140346 140537 . - 0 ID=cds-WP_201745809.1;Parent=gene-LPH39_RS00665;Dbxref=Genbank:WP_201745809.1;Name=WP_201745809.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00665;product=alpha/beta hydrolase;protein_id=WP_201745809.1;transl_table=11 NZ_CP087677.1 RefSeq gene 140706 141824 . - . ID=gene-LPH39_RS00670;Name=LPH39_RS00670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00670;old_locus_tag=LPH39_00670 NZ_CP087677.1 Protein Homology CDS 140706 141824 . - 0 ID=cds-WP_230428504.1;Parent=gene-LPH39_RS00670;Dbxref=Genbank:WP_230428504.1;Name=WP_230428504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019336814.1;locus_tag=LPH39_RS00670;product=MFS transporter;protein_id=WP_230428504.1;transl_table=11 NZ_CP087677.1 RefSeq gene 142104 142994 . + . ID=gene-LPH39_RS00675;Name=LPH39_RS00675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00675;old_locus_tag=LPH39_00675 NZ_CP087677.1 Protein Homology CDS 142104 142994 . + 0 ID=cds-WP_114867135.1;Parent=gene-LPH39_RS00675;Dbxref=Genbank:WP_114867135.1;Name=WP_114867135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006367409.1;locus_tag=LPH39_RS00675;product=LysR family transcriptional regulator;protein_id=WP_114867135.1;transl_table=11 NZ_CP087677.1 RefSeq gene 143238 143564 . - . ID=gene-LPH39_RS00680;Name=LPH39_RS00680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00680;old_locus_tag=LPH39_00680 NZ_CP087677.1 GeneMarkS-2+ CDS 143238 143564 . - 0 ID=cds-WP_038272586.1;Parent=gene-LPH39_RS00680;Dbxref=Genbank:WP_038272586.1;Name=WP_038272586.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00680;product=hypothetical protein;protein_id=WP_038272586.1;transl_table=11 NZ_CP087677.1 RefSeq gene 143621 145693 . + . ID=gene-LPH39_RS00685;Name=LPH39_RS00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00685;old_locus_tag=LPH39_00685 NZ_CP087677.1 Protein Homology CDS 143621 145693 . + 0 ID=cds-WP_038272583.1;Parent=gene-LPH39_RS00685;Dbxref=Genbank:WP_038272583.1;Name=WP_038272583.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237114.1;locus_tag=LPH39_RS00685;product=tetratricopeptide repeat protein;protein_id=WP_038272583.1;transl_table=11 NZ_CP087677.1 RefSeq gene 145781 146395 . + . ID=gene-LPH39_RS00690;Name=LPH39_RS00690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00690;old_locus_tag=LPH39_00690 NZ_CP087677.1 Protein Homology CDS 145781 146395 . + 0 ID=cds-WP_038272582.1;Parent=gene-LPH39_RS00690;Dbxref=Genbank:WP_038272582.1;Name=WP_038272582.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851370.1;locus_tag=LPH39_RS00690;product=YbhB/YbcL family Raf kinase inhibitor-like protein;protein_id=WP_038272582.1;transl_table=11 NZ_CP087677.1 RefSeq gene 148061 148597 . + . ID=gene-LPH39_RS00695;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=LPH39_RS00695;old_locus_tag=LPH39_00695 NZ_CP087677.1 Protein Homology CDS 148061 148597 . + 0 ID=cds-WP_038272580.1;Parent=gene-LPH39_RS00695;Dbxref=Genbank:WP_038272580.1;Name=WP_038272580.1;Ontology_term=GO:0006796,GO:0004427;gbkey=CDS;gene=ppa;go_function=inorganic diphosphate phosphatase activity|0004427||IEA;go_process=phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851369.1;locus_tag=LPH39_RS00695;product=inorganic diphosphatase;protein_id=WP_038272580.1;transl_table=11 NZ_CP087677.1 RefSeq gene 149010 149195 . - . ID=gene-LPH39_RS00700;Name=LPH39_RS00700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00700;old_locus_tag=LPH39_00700 NZ_CP087677.1 GeneMarkS-2+ CDS 149010 149195 . - 0 ID=cds-WP_230430838.1;Parent=gene-LPH39_RS00700;Dbxref=Genbank:WP_230430838.1;Name=WP_230430838.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00700;product=hypothetical protein;protein_id=WP_230430838.1;transl_table=11 NZ_CP087677.1 RefSeq gene 150251 151111 . - . ID=gene-LPH39_RS00705;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=LPH39_RS00705;old_locus_tag=LPH39_00705 NZ_CP087677.1 Protein Homology CDS 150251 151111 . - 0 ID=cds-WP_038272574.1;Parent=gene-LPH39_RS00705;Dbxref=Genbank:WP_038272574.1;Name=WP_038272574.1;Ontology_term=GO:0015036,GO:0005737;gbkey=CDS;gene=trxA;go_component=cytoplasm|0005737||IEA;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919399.1;locus_tag=LPH39_RS00705;product=thioredoxin;protein_id=WP_038272574.1;transl_table=11 NZ_CP087677.1 RefSeq gene 151287 151892 . + . ID=gene-LPH39_RS00710;Name=LPH39_RS00710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00710;old_locus_tag=LPH39_00710 NZ_CP087677.1 Protein Homology CDS 151287 151892 . + 0 ID=cds-WP_038272571.1;Parent=gene-LPH39_RS00710;Dbxref=Genbank:WP_038272571.1;Name=WP_038272571.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088593.1;locus_tag=LPH39_RS00710;product=DUF998 domain-containing protein;protein_id=WP_038272571.1;transl_table=11 NZ_CP087677.1 RefSeq gene 151976 154615 . + . ID=gene-LPH39_RS00715;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=LPH39_RS00715;old_locus_tag=LPH39_00715 NZ_CP087677.1 Protein Homology CDS 151976 154615 . + 0 ID=cds-WP_038272610.1;Parent=gene-LPH39_RS00715;Dbxref=Genbank:WP_038272610.1;Name=WP_038272610.1;Ontology_term=GO:0006429,GO:0004823,GO:0005737;gbkey=CDS;gene=leuS;go_component=cytoplasm|0005737||IEA;go_function=leucine-tRNA ligase activity|0004823||IEA;go_process=leucyl-tRNA aminoacylation|0006429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183388.1;locus_tag=LPH39_RS00715;product=leucine--tRNA ligase;protein_id=WP_038272610.1;transl_table=11 NZ_CP087677.1 RefSeq gene 154705 155307 . + . ID=gene-LPH39_RS00720;Name=lptE;gbkey=Gene;gene=lptE;gene_biotype=protein_coding;locus_tag=LPH39_RS00720;old_locus_tag=LPH39_00720 NZ_CP087677.1 Protein Homology CDS 154705 155307 . + 0 ID=cds-WP_038272569.1;Parent=gene-LPH39_RS00720;Dbxref=Genbank:WP_038272569.1;Name=WP_038272569.1;Ontology_term=GO:0043165,GO:0019867;gbkey=CDS;gene=lptE;go_component=outer membrane|0019867||IEA;go_process=Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088585.1;locus_tag=LPH39_RS00720;product=LPS assembly lipoprotein LptE;protein_id=WP_038272569.1;transl_table=11 NZ_CP087677.1 RefSeq gene 155318 156349 . + . ID=gene-LPH39_RS00725;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=LPH39_RS00725;old_locus_tag=LPH39_00725 NZ_CP087677.1 Protein Homology CDS 155318 156349 . + 0 ID=cds-WP_114867136.1;Parent=gene-LPH39_RS00725;Dbxref=Genbank:WP_114867136.1;Name=WP_114867136.1;Ontology_term=GO:0006260,GO:0003887,GO:0009360;gbkey=CDS;gene=holA;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116404.1;locus_tag=LPH39_RS00725;product=DNA polymerase III subunit delta;protein_id=WP_114867136.1;transl_table=11 NZ_CP087677.1 RefSeq gene 156378 157046 . + . ID=gene-LPH39_RS00730;Name=nadD;gbkey=Gene;gene=nadD;gene_biotype=protein_coding;locus_tag=LPH39_RS00730;old_locus_tag=LPH39_00730 NZ_CP087677.1 Protein Homology CDS 156378 157046 . + 0 ID=cds-WP_038273039.1;Parent=gene-LPH39_RS00730;Dbxref=Genbank:WP_038273039.1;Name=WP_038273039.1;Ontology_term=GO:0009435,GO:0016779;gbkey=CDS;gene=nadD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086142.1;locus_tag=LPH39_RS00730;product=nicotinate-nucleotide adenylyltransferase;protein_id=WP_038273039.1;transl_table=11 NZ_CP087677.1 RefSeq gene 157099 157500 . + . ID=gene-LPH39_RS00735;Name=rsfS;gbkey=Gene;gene=rsfS;gene_biotype=protein_coding;locus_tag=LPH39_RS00735;old_locus_tag=LPH39_00735 NZ_CP087677.1 Protein Homology CDS 157099 157500 . + 0 ID=cds-WP_038273036.1;Parent=gene-LPH39_RS00735;Dbxref=Genbank:WP_038273036.1;Name=WP_038273036.1;Ontology_term=GO:0017148,GO:0043022;gbkey=CDS;gene=rsfS;go_function=ribosome binding|0043022||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607331.1;locus_tag=LPH39_RS00735;product=ribosome silencing factor;protein_id=WP_038273036.1;transl_table=11 NZ_CP087677.1 RefSeq gene 157743 157916 . - . ID=gene-LPH39_RS00740;Name=LPH39_RS00740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00740;old_locus_tag=LPH39_00740 NZ_CP087677.1 Protein Homology CDS 157743 157916 . - 0 ID=cds-WP_114867137.1;Parent=gene-LPH39_RS00740;Dbxref=Genbank:WP_114867137.1;Name=WP_114867137.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086144.1;locus_tag=LPH39_RS00740;product=DUF5668 domain-containing protein;protein_id=WP_114867137.1;transl_table=11 NZ_CP087677.1 RefSeq gene 158718 159833 . + . ID=gene-LPH39_RS00745;Name=mltB;gbkey=Gene;gene=mltB;gene_biotype=protein_coding;locus_tag=LPH39_RS00745;old_locus_tag=LPH39_00745 NZ_CP087677.1 Protein Homology CDS 158718 159833 . + 0 ID=cds-WP_038273033.1;Parent=gene-LPH39_RS00745;Dbxref=Genbank:WP_038273033.1;Name=WP_038273033.1;Ontology_term=GO:0009253,GO:0016757;gbkey=CDS;gene=mltB;go_function=glycosyltransferase activity|0016757||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382650.1;locus_tag=LPH39_RS00745;product=lytic murein transglycosylase B;protein_id=WP_038273033.1;transl_table=11 NZ_CP087677.1 RefSeq gene 159830 161071 . + . ID=gene-LPH39_RS00750;Name=LPH39_RS00750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00750;old_locus_tag=LPH39_00750 NZ_CP087677.1 Protein Homology CDS 159830 161071 . + 0 ID=cds-WP_038273031.1;Parent=gene-LPH39_RS00750;Dbxref=Genbank:WP_038273031.1;Name=WP_038273031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894633.1;locus_tag=LPH39_RS00750;product=septal ring lytic transglycosylase RlpA family protein;protein_id=WP_038273031.1;transl_table=11 NZ_CP087677.1 RefSeq gene 161573 162181 . - . ID=gene-LPH39_RS00755;Name=LPH39_RS00755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00755;old_locus_tag=LPH39_00755 NZ_CP087677.1 Protein Homology CDS 161573 162181 . - 0 ID=cds-WP_038273050.1;Parent=gene-LPH39_RS00755;Dbxref=Genbank:WP_038273050.1;Name=WP_038273050.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300253.1;locus_tag=LPH39_RS00755;product=rhomboid family intramembrane serine protease;protein_id=WP_038273050.1;transl_table=11 NZ_CP087677.1 RefSeq gene 162589 162912 . - . ID=gene-LPH39_RS00760;Name=LPH39_RS00760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00760;old_locus_tag=LPH39_00760 NZ_CP087677.1 GeneMarkS-2+ CDS 162589 162912 . - 0 ID=cds-WP_038273029.1;Parent=gene-LPH39_RS00760;Dbxref=Genbank:WP_038273029.1;Name=WP_038273029.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00760;product=hypothetical protein;protein_id=WP_038273029.1;transl_table=11 NZ_CP087677.1 RefSeq gene 162924 163169 . + . ID=gene-LPH39_RS00765;Name=LPH39_RS00765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00765;old_locus_tag=LPH39_00765 NZ_CP087677.1 GeneMarkS-2+ CDS 162924 163169 . + 0 ID=cds-WP_230428217.1;Parent=gene-LPH39_RS00765;Dbxref=Genbank:WP_230428217.1;Name=WP_230428217.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00765;product=hypothetical protein;protein_id=WP_230428217.1;transl_table=11 NZ_CP087677.1 RefSeq gene 163289 163669 . - . ID=gene-LPH39_RS00770;Name=LPH39_RS00770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00770;old_locus_tag=LPH39_00770 NZ_CP087677.1 Protein Homology CDS 163289 163669 . - 0 ID=cds-WP_038273027.1;Parent=gene-LPH39_RS00770;Dbxref=Genbank:WP_038273027.1;Name=WP_038273027.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098380.1;locus_tag=LPH39_RS00770;product=DUF596 domain-containing protein;protein_id=WP_038273027.1;transl_table=11 NZ_CP087677.1 RefSeq gene 163674 163946 . - . ID=gene-LPH39_RS00775;Name=LPH39_RS00775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00775;old_locus_tag=LPH39_00775 NZ_CP087677.1 Protein Homology CDS 163674 163946 . - 0 ID=cds-WP_038273025.1;Parent=gene-LPH39_RS00775;Dbxref=Genbank:WP_038273025.1;Name=WP_038273025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337939.1;locus_tag=LPH39_RS00775;product=hypothetical protein;protein_id=WP_038273025.1;transl_table=11 NZ_CP087677.1 RefSeq gene 164106 164234 . - . ID=gene-LPH39_RS11940;Name=LPH39_RS11940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11940 NZ_CP087677.1 GeneMarkS-2+ CDS 164106 164234 . - 0 ID=cds-WP_267903151.1;Parent=gene-LPH39_RS11940;Dbxref=Genbank:WP_267903151.1;Name=WP_267903151.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11940;product=hypothetical protein;protein_id=WP_267903151.1;transl_table=11 NZ_CP087677.1 RefSeq gene 164206 164589 . - . ID=gene-LPH39_RS00780;Name=LPH39_RS00780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00780;old_locus_tag=LPH39_00780 NZ_CP087677.1 Protein Homology CDS 164206 164589 . - 0 ID=cds-WP_038273048.1;Parent=gene-LPH39_RS00780;Dbxref=Genbank:WP_038273048.1;Name=WP_038273048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH39_RS00780;product=DUF596 domain-containing protein;protein_id=WP_038273048.1;transl_table=11 NZ_CP087677.1 RefSeq gene 164601 165038 . - . ID=gene-LPH39_RS00785;Name=LPH39_RS00785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00785;old_locus_tag=LPH39_00785 NZ_CP087677.1 Protein Homology CDS 164601 165038 . - 0 ID=cds-WP_081755493.1;Parent=gene-LPH39_RS00785;Dbxref=Genbank:WP_081755493.1;Name=WP_081755493.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017408.2;locus_tag=LPH39_RS00785;product=DUF769 domain-containing protein;protein_id=WP_081755493.1;transl_table=11 NZ_CP087677.1 RefSeq gene 164980 165342 . - . ID=gene-LPH39_RS00790;Name=LPH39_RS00790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00790;old_locus_tag=LPH39_00790 NZ_CP087677.1 Protein Homology CDS 164980 165342 . - 0 ID=cds-WP_051482393.1;Parent=gene-LPH39_RS00790;Dbxref=Genbank:WP_051482393.1;Name=WP_051482393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH39_RS00790;product=DUF596 domain-containing protein;protein_id=WP_051482393.1;transl_table=11 NZ_CP087677.1 RefSeq gene 165354 165608 . - . ID=gene-LPH39_RS00795;Name=LPH39_RS00795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00795;old_locus_tag=LPH39_00795 NZ_CP087677.1 Protein Homology CDS 165354 165608 . - 0 ID=cds-WP_230428218.1;Parent=gene-LPH39_RS00795;Dbxref=Genbank:WP_230428218.1;Name=WP_230428218.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894642.1;locus_tag=LPH39_RS00795;product=hemagglutinin;protein_id=WP_230428218.1;transl_table=11 NZ_CP087677.1 RefSeq gene 165724 165879 . - . ID=gene-LPH39_RS00800;Name=LPH39_RS00800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00800;old_locus_tag=LPH39_00800 NZ_CP087677.1 GeneMarkS-2+ CDS 165724 165879 . - 0 ID=cds-WP_160165232.1;Parent=gene-LPH39_RS00800;Dbxref=Genbank:WP_160165232.1;Name=WP_160165232.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00800;product=hypothetical protein;protein_id=WP_160165232.1;transl_table=11 NZ_CP087677.1 RefSeq gene 165851 166243 . - . ID=gene-LPH39_RS00805;Name=LPH39_RS00805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00805;old_locus_tag=LPH39_00805 NZ_CP087677.1 Protein Homology CDS 165851 166243 . - 0 ID=cds-WP_038273019.1;Parent=gene-LPH39_RS00805;Dbxref=Genbank:WP_038273019.1;Name=WP_038273019.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH39_RS00805;product=DUF596 domain-containing protein;protein_id=WP_038273019.1;transl_table=11 NZ_CP087677.1 RefSeq gene 166248 167381 . - . ID=gene-LPH39_RS00810;Name=LPH39_RS00810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00810;old_locus_tag=LPH39_00810 NZ_CP087677.1 Protein Homology CDS 166248 167381 . - 0 ID=cds-WP_114867139.1;Parent=gene-LPH39_RS00810;Dbxref=Genbank:WP_114867139.1;Name=WP_114867139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382788.1;locus_tag=LPH39_RS00810;product=DUF769 domain-containing protein;protein_id=WP_114867139.1;transl_table=11 NZ_CP087677.1 RefSeq gene 167533 168081 . - . ID=gene-LPH39_RS00815;Name=LPH39_RS00815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00815;old_locus_tag=LPH39_00815 NZ_CP087677.1 GeneMarkS-2+ CDS 167533 168081 . - 0 ID=cds-WP_038273182.1;Parent=gene-LPH39_RS00815;Dbxref=Genbank:WP_038273182.1;Name=WP_038273182.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00815;product=hypothetical protein;protein_id=WP_038273182.1;transl_table=11 NZ_CP087677.1 RefSeq gene 168078 168392 . - . ID=gene-LPH39_RS00820;Name=LPH39_RS00820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00820;old_locus_tag=LPH39_00820 NZ_CP087677.1 GeneMarkS-2+ CDS 168078 168392 . - 0 ID=cds-WP_038273185.1;Parent=gene-LPH39_RS00820;Dbxref=Genbank:WP_038273185.1;Name=WP_038273185.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00820;product=hypothetical protein;protein_id=WP_038273185.1;transl_table=11 NZ_CP087677.1 RefSeq gene 168551 168940 . - . ID=gene-LPH39_RS00825;Name=LPH39_RS00825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00825;old_locus_tag=LPH39_00825 NZ_CP087677.1 Protein Homology CDS 168551 168940 . - 0 ID=cds-WP_038273188.1;Parent=gene-LPH39_RS00825;Dbxref=Genbank:WP_038273188.1;Name=WP_038273188.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH39_RS00825;product=DUF596 domain-containing protein;protein_id=WP_038273188.1;transl_table=11 NZ_CP087677.1 RefSeq gene 168952 170262 . - . ID=gene-LPH39_RS00830;Name=LPH39_RS00830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00830;old_locus_tag=LPH39_00830 NZ_CP087677.1 Protein Homology CDS 168952 170262 . - 0 ID=cds-WP_230428219.1;Parent=gene-LPH39_RS00830;Dbxref=Genbank:WP_230428219.1;Name=WP_230428219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382791.1;locus_tag=LPH39_RS00830;product=DUF769 domain-containing protein;protein_id=WP_230428219.1;transl_table=11 NZ_CP087677.1 RefSeq gene 170627 170791 . - . ID=gene-LPH39_RS00835;Name=LPH39_RS00835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00835;old_locus_tag=LPH39_00835 NZ_CP087677.1 GeneMarkS-2+ CDS 170627 170791 . - 0 ID=cds-WP_160165238.1;Parent=gene-LPH39_RS00835;Dbxref=Genbank:WP_160165238.1;Name=WP_160165238.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00835;product=hypothetical protein;protein_id=WP_160165238.1;transl_table=11 NZ_CP087677.1 RefSeq gene 170763 171155 . - . ID=gene-LPH39_RS00840;Name=LPH39_RS00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00840;old_locus_tag=LPH39_00840 NZ_CP087677.1 Protein Homology CDS 170763 171155 . - 0 ID=cds-WP_038273239.1;Parent=gene-LPH39_RS00840;Dbxref=Genbank:WP_038273239.1;Name=WP_038273239.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086150.1;locus_tag=LPH39_RS00840;product=DUF596 domain-containing protein;protein_id=WP_038273239.1;transl_table=11 NZ_CP087677.1 RefSeq gene 171167 171496 . - . ID=gene-LPH39_RS00845;Name=LPH39_RS00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00845;old_locus_tag=LPH39_00845 NZ_CP087677.1 Protein Homology CDS 171167 171496 . - 0 ID=cds-WP_114867141.1;Parent=gene-LPH39_RS00845;Dbxref=Genbank:WP_114867141.1;Name=WP_114867141.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017408.2;locus_tag=LPH39_RS00845;product=DUF769 domain-containing protein;protein_id=WP_114867141.1;transl_table=11 NZ_CP087677.1 RefSeq gene 171561 171986 . - . ID=gene-LPH39_RS00850;Name=LPH39_RS00850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00850;old_locus_tag=LPH39_00850 NZ_CP087677.1 GeneMarkS-2+ CDS 171561 171986 . - 0 ID=cds-WP_038273237.1;Parent=gene-LPH39_RS00850;Dbxref=Genbank:WP_038273237.1;Name=WP_038273237.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00850;product=hypothetical protein;protein_id=WP_038273237.1;transl_table=11 NZ_CP087677.1 RefSeq gene 171983 174931 . - . ID=gene-LPH39_RS00855;Name=LPH39_RS00855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00855;old_locus_tag=LPH39_00855 NZ_CP087677.1 Protein Homology CDS 171983 174931 . - 0 ID=cds-WP_114867142.1;Parent=gene-LPH39_RS00855;Dbxref=Genbank:WP_114867142.1;Name=WP_114867142.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024728.2;locus_tag=LPH39_RS00855;product=hemagglutinin repeat-containing protein;protein_id=WP_114867142.1;transl_table=11 NZ_CP087677.1 RefSeq gene 174971 175792 . - . ID=gene-LPH39_RS00860;Name=LPH39_RS00860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00860;old_locus_tag=LPH39_00860 NZ_CP087677.1 Protein Homology CDS 174971 175792 . - 0 ID=cds-WP_114867143.1;Parent=gene-LPH39_RS00860;Dbxref=Genbank:WP_114867143.1;Name=WP_114867143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338067.1;locus_tag=LPH39_RS00860;product=DUF769 domain-containing protein;protein_id=WP_114867143.1;transl_table=11 NZ_CP087677.1 RefSeq gene 175801 176616 . - . ID=gene-LPH39_RS00865;Name=LPH39_RS00865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00865;old_locus_tag=LPH39_00865 NZ_CP087677.1 Protein Homology CDS 175801 176616 . - 0 ID=cds-WP_038273126.1;Parent=gene-LPH39_RS00865;Dbxref=Genbank:WP_038273126.1;Name=WP_038273126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089585.1;locus_tag=LPH39_RS00865;product=DUF769 domain-containing protein;protein_id=WP_038273126.1;transl_table=11 NZ_CP087677.1 RefSeq gene 176631 177446 . - . ID=gene-LPH39_RS00870;Name=LPH39_RS00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00870;old_locus_tag=LPH39_00870 NZ_CP087677.1 Protein Homology CDS 176631 177446 . - 0 ID=cds-WP_038273128.1;Parent=gene-LPH39_RS00870;Dbxref=Genbank:WP_038273128.1;Name=WP_038273128.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852863.1;locus_tag=LPH39_RS00870;product=DUF769 domain-containing protein;protein_id=WP_038273128.1;transl_table=11 NZ_CP087677.1 RefSeq gene 177461 178285 . - . ID=gene-LPH39_RS00875;Name=LPH39_RS00875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00875;old_locus_tag=LPH39_00875 NZ_CP087677.1 Protein Homology CDS 177461 178285 . - 0 ID=cds-WP_038273131.1;Parent=gene-LPH39_RS00875;Dbxref=Genbank:WP_038273131.1;Name=WP_038273131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338067.1;locus_tag=LPH39_RS00875;product=DUF769 domain-containing protein;protein_id=WP_038273131.1;transl_table=11 NZ_CP087677.1 RefSeq gene 178294 179106 . - . ID=gene-LPH39_RS00880;Name=LPH39_RS00880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00880;old_locus_tag=LPH39_00880 NZ_CP087677.1 Protein Homology CDS 178294 179106 . - 0 ID=cds-WP_114867144.1;Parent=gene-LPH39_RS00880;Dbxref=Genbank:WP_114867144.1;Name=WP_114867144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852863.1;locus_tag=LPH39_RS00880;product=DUF769 domain-containing protein;protein_id=WP_114867144.1;transl_table=11 NZ_CP087677.1 RefSeq gene 179112 188477 . - . ID=gene-LPH39_RS00885;Name=LPH39_RS00885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00885;old_locus_tag=LPH39_00885 NZ_CP087677.1 Protein Homology CDS 179112 188477 . - 0 ID=cds-WP_230428220.1;Parent=gene-LPH39_RS00885;Dbxref=Genbank:WP_230428220.1;Name=WP_230428220.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098253.1;locus_tag=LPH39_RS00885;product=hemagglutinin repeat-containing protein;protein_id=WP_230428220.1;transl_table=11 NZ_CP087677.1 RefSeq gene 188437 189807 . - . ID=gene-LPH39_RS00890;Name=LPH39_RS00890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00890;old_locus_tag=LPH39_00890 NZ_CP087677.1 Protein Homology CDS 188437 189807 . - 0 ID=cds-WP_114867153.1;Parent=gene-LPH39_RS00890;Dbxref=Genbank:WP_114867153.1;Name=WP_114867153.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017658.2;locus_tag=LPH39_RS00890;product=filamentous hemagglutinin N-terminal domain-containing protein;protein_id=WP_114867153.1;transl_table=11 NZ_CP087677.1 RefSeq gene 190206 190475 . + . ID=gene-LPH39_RS00895;Name=LPH39_RS00895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00895;old_locus_tag=LPH39_00895 NZ_CP087677.1 Protein Homology CDS 190206 190475 . + 0 ID=cds-WP_038273253.1;Parent=gene-LPH39_RS00895;Dbxref=Genbank:WP_038273253.1;Name=WP_038273253.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001260984.1;locus_tag=LPH39_RS00895;product=type II toxin-antitoxin system ParD family antitoxin;protein_id=WP_038273253.1;transl_table=11 NZ_CP087677.1 RefSeq gene 190472 190792 . + . ID=gene-LPH39_RS00900;Name=LPH39_RS00900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00900;old_locus_tag=LPH39_00900 NZ_CP087677.1 Protein Homology CDS 190472 190792 . + 0 ID=cds-WP_038273255.1;Parent=gene-LPH39_RS00900;Dbxref=Genbank:WP_038273255.1;Name=WP_038273255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011117139.1;locus_tag=LPH39_RS00900;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_038273255.1;transl_table=11 NZ_CP087677.1 RefSeq gene 190871 191182 . - . ID=gene-LPH39_RS00905;Name=LPH39_RS00905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00905;old_locus_tag=LPH39_00905 NZ_CP087677.1 Protein Homology CDS 190871 191182 . - 0 ID=cds-WP_081755498.1;Parent=gene-LPH39_RS00905;Dbxref=Genbank:WP_081755498.1;Name=WP_081755498.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025298.2;locus_tag=LPH39_RS00905;product=DNA/RNA non-specific endonuclease;protein_id=WP_081755498.1;transl_table=11 NZ_CP087677.1 RefSeq gene 191119 191358 . - . ID=gene-LPH39_RS00910;Name=LPH39_RS00910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00910;old_locus_tag=LPH39_00910 NZ_CP087677.1 GeneMarkS-2+ CDS 191119 191358 . - 0 ID=cds-WP_114867147.1;Parent=gene-LPH39_RS00910;Dbxref=Genbank:WP_114867147.1;Name=WP_114867147.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00910;product=hypothetical protein;protein_id=WP_114867147.1;transl_table=11 NZ_CP087677.1 RefSeq gene 191773 192165 . - . ID=gene-LPH39_RS00915;Name=LPH39_RS00915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00915;old_locus_tag=LPH39_00915 NZ_CP087677.1 Protein Homology CDS 191773 192165 . - 0 ID=cds-WP_038273145.1;Parent=gene-LPH39_RS00915;Dbxref=Genbank:WP_038273145.1;Name=WP_038273145.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086150.1;locus_tag=LPH39_RS00915;product=DUF596 domain-containing protein;protein_id=WP_038273145.1;transl_table=11 NZ_CP087677.1 RefSeq gene 192177 192530 . - . ID=gene-LPH39_RS00920;Name=LPH39_RS00920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00920;old_locus_tag=LPH39_00920 NZ_CP087677.1 Protein Homology CDS 192177 192530 . - 0 ID=cds-WP_114867148.1;Parent=gene-LPH39_RS00920;Dbxref=Genbank:WP_114867148.1;Name=WP_114867148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090789.1;locus_tag=LPH39_RS00920;product=DUF769 domain-containing protein;protein_id=WP_114867148.1;transl_table=11 NZ_CP087677.1 RefSeq gene 192610 192996 . - . ID=gene-LPH39_RS00925;Name=LPH39_RS00925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00925;old_locus_tag=LPH39_00925 NZ_CP087677.1 Protein Homology CDS 192610 192996 . - 0 ID=cds-WP_038273143.1;Parent=gene-LPH39_RS00925;Dbxref=Genbank:WP_038273143.1;Name=WP_038273143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088333.1;locus_tag=LPH39_RS00925;product=DUF596 domain-containing protein;protein_id=WP_038273143.1;transl_table=11 NZ_CP087677.1 RefSeq gene 193001 193333 . - . ID=gene-LPH39_RS00930;Name=LPH39_RS00930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00930;old_locus_tag=LPH39_00930 NZ_CP087677.1 Protein Homology CDS 193001 193333 . - 0 ID=cds-WP_114867149.1;Parent=gene-LPH39_RS00930;Dbxref=Genbank:WP_114867149.1;Name=WP_114867149.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017408.2;locus_tag=LPH39_RS00930;product=DUF769 domain-containing protein;protein_id=WP_114867149.1;transl_table=11 NZ_CP087677.1 RefSeq gene 193399 193836 . - . ID=gene-LPH39_RS00935;Name=LPH39_RS00935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00935;old_locus_tag=LPH39_00935 NZ_CP087677.1 GeneMarkS-2+ CDS 193399 193836 . - 0 ID=cds-WP_038273137.1;Parent=gene-LPH39_RS00935;Dbxref=Genbank:WP_038273137.1;Name=WP_038273137.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00935;product=hypothetical protein;protein_id=WP_038273137.1;transl_table=11 NZ_CP087677.1 RefSeq gene 193833 195008 . - . ID=gene-LPH39_RS00940;Name=LPH39_RS00940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00940;old_locus_tag=LPH39_00940 NZ_CP087677.1 Protein Homology CDS 193833 195008 . - 0 ID=cds-WP_205395216.1;Parent=gene-LPH39_RS00940;Dbxref=Genbank:WP_205395216.1;Name=WP_205395216.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382788.1;locus_tag=LPH39_RS00940;product=DNA/RNA non-specific endonuclease;protein_id=WP_205395216.1;transl_table=11 NZ_CP087677.1 RefSeq gene 195307 195471 . - . ID=gene-LPH39_RS00945;Name=LPH39_RS00945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00945;old_locus_tag=LPH39_00945 NZ_CP087677.1 GeneMarkS-2+ CDS 195307 195471 . - 0 ID=cds-WP_160165237.1;Parent=gene-LPH39_RS00945;Dbxref=Genbank:WP_160165237.1;Name=WP_160165237.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00945;product=hypothetical protein;protein_id=WP_160165237.1;transl_table=11 NZ_CP087677.1 RefSeq gene 195443 195835 . - . ID=gene-LPH39_RS00950;Name=LPH39_RS00950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00950;old_locus_tag=LPH39_00950 NZ_CP087677.1 Protein Homology CDS 195443 195835 . - 0 ID=cds-WP_038273217.1;Parent=gene-LPH39_RS00950;Dbxref=Genbank:WP_038273217.1;Name=WP_038273217.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894641.1;locus_tag=LPH39_RS00950;product=DUF596 domain-containing protein;protein_id=WP_038273217.1;transl_table=11 NZ_CP087677.1 RefSeq gene 195847 196200 . - . ID=gene-LPH39_RS00955;Name=LPH39_RS00955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00955;old_locus_tag=LPH39_00955 NZ_CP087677.1 Protein Homology CDS 195847 196200 . - 0 ID=cds-WP_114867150.1;Parent=gene-LPH39_RS00955;Dbxref=Genbank:WP_114867150.1;Name=WP_114867150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098383.1;locus_tag=LPH39_RS00955;product=DUF769 domain-containing protein;protein_id=WP_114867150.1;transl_table=11 NZ_CP087677.1 RefSeq gene 196280 196672 . - . ID=gene-LPH39_RS00960;Name=LPH39_RS00960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00960;old_locus_tag=LPH39_00960 NZ_CP087677.1 Protein Homology CDS 196280 196672 . - 0 ID=cds-WP_038273215.1;Parent=gene-LPH39_RS00960;Dbxref=Genbank:WP_038273215.1;Name=WP_038273215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382790.1;locus_tag=LPH39_RS00960;product=DUF596 domain-containing protein;protein_id=WP_038273215.1;transl_table=11 NZ_CP087677.1 RefSeq gene 196684 197820 . - . ID=gene-LPH39_RS00965;Name=LPH39_RS00965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00965;old_locus_tag=LPH39_00965 NZ_CP087677.1 Protein Homology CDS 196684 197820 . - 0 ID=cds-WP_114867151.1;Parent=gene-LPH39_RS00965;Dbxref=Genbank:WP_114867151.1;Name=WP_114867151.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382788.1;locus_tag=LPH39_RS00965;product=DUF769 domain-containing protein;protein_id=WP_114867151.1;transl_table=11 NZ_CP087677.1 RefSeq gene 197974 198507 . - . ID=gene-LPH39_RS00970;Name=LPH39_RS00970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00970;old_locus_tag=LPH39_00970 NZ_CP087677.1 GeneMarkS-2+ CDS 197974 198507 . - 0 ID=cds-WP_038273268.1;Parent=gene-LPH39_RS00970;Dbxref=Genbank:WP_038273268.1;Name=WP_038273268.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00970;product=hypothetical protein;protein_id=WP_038273268.1;transl_table=11 NZ_CP087677.1 RefSeq gene 198504 199865 . - . ID=gene-LPH39_RS00975;Name=LPH39_RS00975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00975;old_locus_tag=LPH39_00975 NZ_CP087677.1 Protein Homology CDS 198504 199865 . - 0 ID=cds-WP_230428221.1;Parent=gene-LPH39_RS00975;Dbxref=Genbank:WP_230428221.1;Name=WP_230428221.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382789.1;locus_tag=LPH39_RS00975;product=DUF769 domain-containing protein;protein_id=WP_230428221.1;transl_table=11 NZ_CP087677.1 RefSeq gene 200366 200758 . - . ID=gene-LPH39_RS00980;Name=LPH39_RS00980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00980;old_locus_tag=LPH39_00980 NZ_CP087677.1 Protein Homology CDS 200366 200758 . - 0 ID=cds-WP_038273304.1;Parent=gene-LPH39_RS00980;Dbxref=Genbank:WP_038273304.1;Name=WP_038273304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH39_RS00980;product=DUF596 domain-containing protein;protein_id=WP_038273304.1;transl_table=11 NZ_CP087677.1 RefSeq gene 200770 210159 . - . ID=gene-LPH39_RS00985;Name=LPH39_RS00985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00985;old_locus_tag=LPH39_00985 NZ_CP087677.1 Protein Homology CDS 200770 210159 . - 0 ID=cds-WP_114867152.1;Parent=gene-LPH39_RS00985;Dbxref=Genbank:WP_114867152.1;Name=WP_114867152.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024728.2;locus_tag=LPH39_RS00985;product=hemagglutinin repeat-containing protein;protein_id=WP_114867152.1;transl_table=11 NZ_CP087677.1 RefSeq gene 210119 211489 . - . ID=gene-LPH39_RS00990;Name=LPH39_RS00990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00990;old_locus_tag=LPH39_00990 NZ_CP087677.1 Protein Homology CDS 210119 211489 . - 0 ID=cds-WP_114867153.1-2;Parent=gene-LPH39_RS00990;Dbxref=Genbank:WP_114867153.1;Name=WP_114867153.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017658.2;locus_tag=LPH39_RS00990;product=filamentous hemagglutinin N-terminal domain-containing protein;protein_id=WP_114867153.1;transl_table=11 NZ_CP087677.1 RefSeq gene 211784 211996 . + . ID=gene-LPH39_RS00995;Name=LPH39_RS00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS00995;old_locus_tag=LPH39_00995 NZ_CP087677.1 GeneMarkS-2+ CDS 211784 211996 . + 0 ID=cds-WP_162814100.1;Parent=gene-LPH39_RS00995;Dbxref=Genbank:WP_162814100.1;Name=WP_162814100.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS00995;product=hypothetical protein;protein_id=WP_162814100.1;transl_table=11 NZ_CP087677.1 RefSeq gene 212003 212365 . + . ID=gene-LPH39_RS01000;Name=LPH39_RS01000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01000;old_locus_tag=LPH39_01000 NZ_CP087677.1 GeneMarkS-2+ CDS 212003 212365 . + 0 ID=cds-WP_152536614.1;Parent=gene-LPH39_RS01000;Dbxref=Genbank:WP_152536614.1;Name=WP_152536614.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01000;product=hypothetical protein;protein_id=WP_152536614.1;transl_table=11 NZ_CP087677.1 RefSeq gene 212537 212662 . + . ID=gene-LPH39_RS11945;Name=LPH39_RS11945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11945 NZ_CP087677.1 GeneMarkS-2+ CDS 212537 212662 . + 0 ID=cds-WP_267903152.1;Parent=gene-LPH39_RS11945;Dbxref=Genbank:WP_267903152.1;Name=WP_267903152.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11945;product=hypothetical protein;protein_id=WP_267903152.1;transl_table=11 NZ_CP087677.1 RefSeq gene 213398 213964 . + . ID=gene-LPH39_RS01005;Name=LPH39_RS01005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01005;old_locus_tag=LPH39_01005 NZ_CP087677.1 Protein Homology CDS 213398 213964 . + 0 ID=cds-WP_200866196.1;Parent=gene-LPH39_RS01005;Dbxref=Genbank:WP_200866196.1;Name=WP_200866196.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013933.2;locus_tag=LPH39_RS01005;product=LysE family translocator;protein_id=WP_200866196.1;transl_table=11 NZ_CP087677.1 RefSeq gene 214338 215258 . + . ID=gene-LPH39_RS01010;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=LPH39_RS01010;old_locus_tag=LPH39_01010 NZ_CP087677.1 Protein Homology CDS 214338 215258 . + 0 ID=cds-WP_038271207.1;Parent=gene-LPH39_RS01010;Dbxref=Genbank:WP_038271207.1;Name=WP_038271207.1;Ontology_term=GO:0036211,GO:0008757;gbkey=CDS;gene=prmA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088330.1;locus_tag=LPH39_RS01010;product=50S ribosomal protein L11 methyltransferase;protein_id=WP_038271207.1;transl_table=11 NZ_CP087677.1 RefSeq gene 215420 215947 . + . ID=gene-LPH39_RS01015;Name=LPH39_RS01015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01015;old_locus_tag=LPH39_01015 NZ_CP087677.1 GeneMarkS-2+ CDS 215420 215947 . + 0 ID=cds-WP_160165171.1;Parent=gene-LPH39_RS01015;Dbxref=Genbank:WP_160165171.1;Name=WP_160165171.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01015;product=hypothetical protein;protein_id=WP_160165171.1;transl_table=11 NZ_CP087677.1 RefSeq gene 216082 216525 . + . ID=gene-LPH39_RS01020;Name=LPH39_RS01020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01020;old_locus_tag=LPH39_01020 NZ_CP087677.1 Protein Homology CDS 216082 216525 . + 0 ID=cds-WP_038271205.1;Parent=gene-LPH39_RS01020;Dbxref=Genbank:WP_038271205.1;Name=WP_038271205.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851337.1;locus_tag=LPH39_RS01020;product=hypothetical protein;protein_id=WP_038271205.1;transl_table=11 NZ_CP087677.1 RefSeq gene 217131 217697 . + . ID=gene-LPH39_RS01025;Name=yeiP;gbkey=Gene;gene=yeiP;gene_biotype=protein_coding;locus_tag=LPH39_RS01025;old_locus_tag=LPH39_01025 NZ_CP087677.1 Protein Homology CDS 217131 217697 . + 0 ID=cds-WP_114867220.1;Parent=gene-LPH39_RS01025;Dbxref=Genbank:WP_114867220.1;Name=WP_114867220.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=yeiP;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009603592.1;locus_tag=LPH39_RS01025;product=elongation factor P-like protein YeiP;protein_id=WP_114867220.1;transl_table=11 NZ_CP087677.1 RefSeq gene 217840 219228 . - . ID=gene-LPH39_RS01030;Name=LPH39_RS01030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01030;old_locus_tag=LPH39_01030 NZ_CP087677.1 Protein Homology CDS 217840 219228 . - 0 ID=cds-WP_038271203.1;Parent=gene-LPH39_RS01030;Dbxref=Genbank:WP_038271203.1;Name=WP_038271203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019399725.1;locus_tag=LPH39_RS01030;product=FAD-binding oxidoreductase;protein_id=WP_038271203.1;transl_table=11 NZ_CP087677.1 RefSeq gene 219411 220652 . + . ID=gene-LPH39_RS01035;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;locus_tag=LPH39_RS01035;old_locus_tag=LPH39_01035 NZ_CP087677.1 Protein Homology CDS 219411 220652 . + 0 ID=cds-WP_038271202.1;Parent=gene-LPH39_RS01035;Dbxref=Genbank:WP_038271202.1;Name=WP_038271202.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=serA;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915394.1;locus_tag=LPH39_RS01035;product=phosphoglycerate dehydrogenase;protein_id=WP_038271202.1;transl_table=11 NZ_CP087677.1 RefSeq gene 221115 222587 . + . ID=gene-LPH39_RS01040;Name=LPH39_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01040;old_locus_tag=LPH39_01040 NZ_CP087677.1 Protein Homology CDS 221115 222587 . + 0 ID=cds-WP_038271201.1;Parent=gene-LPH39_RS01040;Dbxref=Genbank:WP_038271201.1;Name=WP_038271201.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036992.1;locus_tag=LPH39_RS01040;product=amino acid permease;protein_id=WP_038271201.1;transl_table=11 NZ_CP087677.1 RefSeq gene 222659 224083 . + . ID=gene-LPH39_RS01045;Name=LPH39_RS01045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01045;old_locus_tag=LPH39_01045 NZ_CP087677.1 Protein Homology CDS 222659 224083 . + 0 ID=cds-WP_038271200.1;Parent=gene-LPH39_RS01045;Dbxref=Genbank:WP_038271200.1;Name=WP_038271200.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851332.1;locus_tag=LPH39_RS01045;product=amino acid permease;protein_id=WP_038271200.1;transl_table=11 NZ_CP087677.1 RefSeq gene 224121 224777 . + . ID=gene-LPH39_RS01050;Name=LPH39_RS01050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01050;old_locus_tag=LPH39_01050 NZ_CP087677.1 Protein Homology CDS 224121 224777 . + 0 ID=cds-WP_038271199.1;Parent=gene-LPH39_RS01050;Dbxref=Genbank:WP_038271199.1;Name=WP_038271199.1;Ontology_term=GO:0019509,GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851331.1;locus_tag=LPH39_RS01050;product=methylthioribulose 1-phosphate dehydratase;protein_id=WP_038271199.1;transl_table=11 NZ_CP087677.1 RefSeq gene 224813 225379 . + . ID=gene-LPH39_RS01055;Name=LPH39_RS01055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01055;old_locus_tag=LPH39_01055 NZ_CP087677.1 Protein Homology CDS 224813 225379 . + 0 ID=cds-WP_038271198.1;Parent=gene-LPH39_RS01055;Dbxref=Genbank:WP_038271198.1;Name=WP_038271198.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571451.1;locus_tag=LPH39_RS01055;product=acireductone dioxygenase;protein_id=WP_038271198.1;transl_table=11 NZ_CP087677.1 RefSeq gene 225382 226080 . + . ID=gene-LPH39_RS01060;Name=mtnC;gbkey=Gene;gene=mtnC;gene_biotype=protein_coding;locus_tag=LPH39_RS01060;old_locus_tag=LPH39_01060 NZ_CP087677.1 Protein Homology CDS 225382 226080 . + 0 ID=cds-WP_038271197.1;Parent=gene-LPH39_RS01060;Dbxref=Genbank:WP_038271197.1;Name=WP_038271197.1;Ontology_term=GO:0019509,GO:0016791,GO:0016862;gbkey=CDS;gene=mtnC;go_function=phosphatase activity|0016791||IEA,intramolecular oxidoreductase activity%2C interconverting keto- and enol-groups|0016862||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303202.1;locus_tag=LPH39_RS01060;product=acireductone synthase;protein_id=WP_038271197.1;transl_table=11 NZ_CP087677.1 RefSeq gene 226219 226401 . - . ID=gene-LPH39_RS01065;Name=LPH39_RS01065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01065;old_locus_tag=LPH39_01065 NZ_CP087677.1 GeneMarkS-2+ CDS 226219 226401 . - 0 ID=cds-WP_038271196.1;Parent=gene-LPH39_RS01065;Dbxref=Genbank:WP_038271196.1;Name=WP_038271196.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01065;product=hypothetical protein;protein_id=WP_038271196.1;transl_table=11 NZ_CP087677.1 RefSeq gene 226829 226993 . - . ID=gene-LPH39_RS01070;Name=LPH39_RS01070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01070;old_locus_tag=LPH39_01070 NZ_CP087677.1 GeneMarkS-2+ CDS 226829 226993 . - 0 ID=cds-WP_160199356.1;Parent=gene-LPH39_RS01070;Dbxref=Genbank:WP_160199356.1;Name=WP_160199356.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01070;product=hypothetical protein;protein_id=WP_160199356.1;transl_table=11 NZ_CP087677.1 RefSeq gene 227236 228204 . + . ID=gene-LPH39_RS01075;Name=LPH39_RS01075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01075;old_locus_tag=LPH39_01075 NZ_CP087677.1 Protein Homology CDS 227236 228204 . + 0 ID=cds-WP_081755435.1;Parent=gene-LPH39_RS01075;Dbxref=Genbank:WP_081755435.1;Name=WP_081755435.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997416.1;locus_tag=LPH39_RS01075;product=peptidase C13;protein_id=WP_081755435.1;transl_table=11 NZ_CP087677.1 RefSeq gene 229089 229364 . + . ID=gene-LPH39_RS01080;Name=LPH39_RS01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01080;old_locus_tag=LPH39_01080 NZ_CP087677.1 GeneMarkS-2+ CDS 229089 229364 . + 0 ID=cds-WP_038271193.1;Parent=gene-LPH39_RS01080;Dbxref=Genbank:WP_038271193.1;Name=WP_038271193.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01080;product=hypothetical protein;protein_id=WP_038271193.1;transl_table=11 NZ_CP087677.1 RefSeq gene 230003 230623 . - . ID=gene-LPH39_RS01085;Name=hisIE;gbkey=Gene;gene=hisIE;gene_biotype=protein_coding;locus_tag=LPH39_RS01085;old_locus_tag=LPH39_01085 NZ_CP087677.1 Protein Homology CDS 230003 230623 . - 0 ID=cds-WP_038271192.1;Parent=gene-LPH39_RS01085;Dbxref=Genbank:WP_038271192.1;Name=WP_038271192.1;Ontology_term=GO:0000105,GO:0004635,GO:0004636;gbkey=CDS;gene=hisIE;go_function=phosphoribosyl-AMP cyclohydrolase activity|0004635||IEA,phosphoribosyl-ATP diphosphatase activity|0004636||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851328.1;locus_tag=LPH39_RS01085;product=bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE;protein_id=WP_038271192.1;transl_table=11 NZ_CP087677.1 RefSeq gene 230613 231389 . - . ID=gene-LPH39_RS01090;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=LPH39_RS01090;old_locus_tag=LPH39_01090 NZ_CP087677.1 Protein Homology CDS 230613 231389 . - 0 ID=cds-WP_038271191.1;Parent=gene-LPH39_RS01090;Dbxref=Genbank:WP_038271191.1;Name=WP_038271191.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisF;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503177.1;locus_tag=LPH39_RS01090;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=WP_038271191.1;transl_table=11 NZ_CP087677.1 RefSeq gene 231499 232308 . - . ID=gene-LPH39_RS01095;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;locus_tag=LPH39_RS01095;old_locus_tag=LPH39_01095 NZ_CP087677.1 Protein Homology CDS 231499 232308 . - 0 ID=cds-WP_038271190.1;Parent=gene-LPH39_RS01095;Dbxref=Genbank:WP_038271190.1;Name=WP_038271190.1;Ontology_term=GO:0000105,GO:0003949;gbkey=CDS;gene=hisA;go_function=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity|0003949||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083405.1;locus_tag=LPH39_RS01095;product=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase;protein_id=WP_038271190.1;transl_table=11 NZ_CP087677.1 RefSeq gene 232305 232907 . - . ID=gene-LPH39_RS01100;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=LPH39_RS01100;old_locus_tag=LPH39_01100 NZ_CP087677.1 Protein Homology CDS 232305 232907 . - 0 ID=cds-WP_038271189.1;Parent=gene-LPH39_RS01100;Dbxref=Genbank:WP_038271189.1;Name=WP_038271189.1;Ontology_term=GO:0000105,GO:0000107,GO:0016884;gbkey=CDS;gene=hisH;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA,carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor|0016884||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019661417.1;locus_tag=LPH39_RS01100;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=WP_038271189.1;transl_table=11 NZ_CP087677.1 RefSeq gene 232904 234031 . - . ID=gene-LPH39_RS01105;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;locus_tag=LPH39_RS01105;old_locus_tag=LPH39_01105 NZ_CP087677.1 Protein Homology CDS 232904 234031 . - 0 ID=cds-WP_038271188.1;Parent=gene-LPH39_RS01105;Dbxref=Genbank:WP_038271188.1;Name=WP_038271188.1;Ontology_term=GO:0000105,GO:0004401,GO:0004424;gbkey=CDS;gene=hisB;go_function=histidinol-phosphatase activity|0004401||IEA,imidazoleglycerol-phosphate dehydratase activity|0004424||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571443.1;locus_tag=LPH39_RS01105;product=bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB;protein_id=WP_038271188.1;transl_table=11 NZ_CP087677.1 RefSeq gene 234028 235125 . - . ID=gene-LPH39_RS01110;Name=hisC;gbkey=Gene;gene=hisC;gene_biotype=protein_coding;locus_tag=LPH39_RS01110;old_locus_tag=LPH39_01110 NZ_CP087677.1 Protein Homology CDS 234028 235125 . - 0 ID=cds-WP_038271187.1;Parent=gene-LPH39_RS01110;Dbxref=Genbank:WP_038271187.1;Name=WP_038271187.1;Ontology_term=GO:0000105,GO:0004400;gbkey=CDS;gene=hisC;go_function=histidinol-phosphate transaminase activity|0004400||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083408.1;locus_tag=LPH39_RS01110;product=histidinol-phosphate transaminase;protein_id=WP_038271187.1;transl_table=11 NZ_CP087677.1 RefSeq gene 235122 236417 . - . ID=gene-LPH39_RS01115;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=LPH39_RS01115;old_locus_tag=LPH39_01115 NZ_CP087677.1 Protein Homology CDS 235122 236417 . - 0 ID=cds-WP_038271186.1;Parent=gene-LPH39_RS01115;Dbxref=Genbank:WP_038271186.1;Name=WP_038271186.1;Ontology_term=GO:0000105,GO:0004399;gbkey=CDS;gene=hisD;go_function=histidinol dehydrogenase activity|0004399||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155317.1;locus_tag=LPH39_RS01115;product=histidinol dehydrogenase;protein_id=WP_038271186.1;transl_table=11 NZ_CP087677.1 RefSeq gene 236414 237328 . - . ID=gene-LPH39_RS01120;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=LPH39_RS01120;old_locus_tag=LPH39_01120 NZ_CP087677.1 Protein Homology CDS 236414 237328 . - 0 ID=cds-WP_038271185.1;Parent=gene-LPH39_RS01120;Dbxref=Genbank:WP_038271185.1;Name=WP_038271185.1;Ontology_term=GO:0000105,GO:0003879;gbkey=CDS;gene=hisG;go_function=ATP phosphoribosyltransferase activity|0003879||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237692.1;locus_tag=LPH39_RS01120;product=ATP phosphoribosyltransferase;protein_id=WP_038271185.1;transl_table=11 NZ_CP087677.1 RefSeq gene 237338 237664 . - . ID=gene-LPH39_RS01125;Name=LPH39_RS01125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01125;old_locus_tag=LPH39_01125 NZ_CP087677.1 Protein Homology CDS 237338 237664 . - 0 ID=cds-WP_038271184.1;Parent=gene-LPH39_RS01125;Dbxref=Genbank:WP_038271184.1;Name=WP_038271184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017908286.1;locus_tag=LPH39_RS01125;product=YerC/YecD family TrpR-related protein;protein_id=WP_038271184.1;transl_table=11 NZ_CP087677.1 RefSeq gene 238213 238455 . - . ID=gene-LPH39_RS01130;Name=LPH39_RS01130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01130;old_locus_tag=LPH39_01130 NZ_CP087677.1 GeneMarkS-2+ CDS 238213 238455 . - 0 ID=cds-WP_038271183.1;Parent=gene-LPH39_RS01130;Dbxref=Genbank:WP_038271183.1;Name=WP_038271183.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01130;product=hypothetical protein;protein_id=WP_038271183.1;transl_table=11 NZ_CP087677.1 RefSeq gene 238458 239858 . - . ID=gene-LPH39_RS01135;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=LPH39_RS01135;old_locus_tag=LPH39_01135 NZ_CP087677.1 Protein Homology CDS 238458 239858 . - 0 ID=cds-WP_038271182.1;Parent=gene-LPH39_RS01135;Dbxref=Genbank:WP_038271182.1;Name=WP_038271182.1;Ontology_term=GO:0006427,GO:0004821,GO:0005737;gbkey=CDS;gene=hisS;go_component=cytoplasm|0005737||IEA;go_function=histidine-tRNA ligase activity|0004821||IEA;go_process=histidyl-tRNA aminoacylation|0006427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851319.1;locus_tag=LPH39_RS01135;product=histidine--tRNA ligase;protein_id=WP_038271182.1;transl_table=11 NZ_CP087677.1 RefSeq gene 240222 241514 . - . ID=gene-LPH39_RS01140;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=LPH39_RS01140;old_locus_tag=LPH39_01140 NZ_CP087677.1 Protein Homology CDS 240222 241514 . - 0 ID=cds-WP_038271220.1;Parent=gene-LPH39_RS01140;Dbxref=Genbank:WP_038271220.1;Name=WP_038271220.1;Ontology_term=GO:0009088,GO:0004795;gbkey=CDS;gene=thrC;go_function=threonine synthase activity|0004795||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088310.1;locus_tag=LPH39_RS01140;product=threonine synthase;protein_id=WP_038271220.1;transl_table=11 NZ_CP087677.1 RefSeq gene 241566 242534 . - . ID=gene-LPH39_RS01145;Name=LPH39_RS01145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01145;old_locus_tag=LPH39_01145 NZ_CP087677.1 Protein Homology CDS 241566 242534 . - 0 ID=cds-WP_038271181.1;Parent=gene-LPH39_RS01145;Dbxref=Genbank:WP_038271181.1;Name=WP_038271181.1;Ontology_term=GO:0006566,GO:0004413,GO:0005524;gbkey=CDS;go_function=homoserine kinase activity|0004413||IEA,ATP binding|0005524||IEA;go_process=threonine metabolic process|0006566||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894672.1;locus_tag=LPH39_RS01145;product=homoserine kinase;protein_id=WP_038271181.1;transl_table=11 NZ_CP087677.1 RefSeq gene 242531 245038 . - . ID=gene-LPH39_RS01150;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;locus_tag=LPH39_RS01150;old_locus_tag=LPH39_01150 NZ_CP087677.1 Protein Homology CDS 242531 245038 . - 0 ID=cds-WP_051482310.1;Parent=gene-LPH39_RS01150;Dbxref=Genbank:WP_051482310.1;Name=WP_051482310.1;Ontology_term=GO:0008652,GO:0009067,GO:0004072,GO:0004412,GO:0050661;gbkey=CDS;gene=thrA;go_function=aspartate kinase activity|0004072||IEA,homoserine dehydrogenase activity|0004412||IEA,NADP binding|0050661||IEA;go_process=amino acid biosynthetic process|0008652||IEA,aspartate family amino acid biosynthetic process|0009067||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851316.1;locus_tag=LPH39_RS01150;product=bifunctional aspartate kinase/homoserine dehydrogenase I;protein_id=WP_051482310.1;transl_table=11 NZ_CP087677.1 RefSeq gene 245129 245314 . - . ID=gene-LPH39_RS01155;Name=LPH39_RS01155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01155;old_locus_tag=LPH39_01155 NZ_CP087677.1 GeneMarkS-2+ CDS 245129 245314 . - 0 ID=cds-WP_152536612.1;Parent=gene-LPH39_RS01155;Dbxref=Genbank:WP_152536612.1;Name=WP_152536612.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01155;product=hypothetical protein;protein_id=WP_152536612.1;transl_table=11 NZ_CP087677.1 RefSeq gene 245529 246467 . - . ID=gene-LPH39_RS01160;Name=LPH39_RS01160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01160;old_locus_tag=LPH39_01160 NZ_CP087677.1 Protein Homology CDS 245529 246467 . - 0 ID=cds-WP_038271179.1;Parent=gene-LPH39_RS01160;Dbxref=Genbank:WP_038271179.1;Name=WP_038271179.1;Ontology_term=GO:0006207,GO:0006520,GO:0004070,GO:0016597;gbkey=CDS;go_function=aspartate carbamoyltransferase activity|0004070||IEA,amino acid binding|0016597||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088307.1;locus_tag=LPH39_RS01160;product=aspartate carbamoyltransferase catalytic subunit;protein_id=WP_038271179.1;transl_table=11 NZ_CP087677.1 RefSeq gene 246495 246962 . - . ID=gene-LPH39_RS01165;Name=ruvX;gbkey=Gene;gene=ruvX;gene_biotype=protein_coding;locus_tag=LPH39_RS01165;old_locus_tag=LPH39_01165 NZ_CP087677.1 Protein Homology CDS 246495 246962 . - 0 ID=cds-WP_038271178.1;Parent=gene-LPH39_RS01165;Dbxref=Genbank:WP_038271178.1;Name=WP_038271178.1;Ontology_term=GO:0008150,GO:0003674,GO:0005737;gbkey=CDS;gene=ruvX;go_component=cytoplasm|0005737||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302529.1;locus_tag=LPH39_RS01165;product=Holliday junction resolvase RuvX;protein_id=WP_038271178.1;transl_table=11 NZ_CP087677.1 RefSeq gene 246955 247521 . - . ID=gene-LPH39_RS01170;Name=LPH39_RS01170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01170;old_locus_tag=LPH39_01170 NZ_CP087677.1 Protein Homology CDS 246955 247521 . - 0 ID=cds-WP_038271177.1;Parent=gene-LPH39_RS01170;Dbxref=Genbank:WP_038271177.1;Name=WP_038271177.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851314.1;locus_tag=LPH39_RS01170;product=YqgE/AlgH family protein;protein_id=WP_038271177.1;transl_table=11 NZ_CP087677.1 RefSeq gene 248017 249201 . - . ID=gene-LPH39_RS01175;Name=LPH39_RS01175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01175;old_locus_tag=LPH39_01175 NZ_CP087677.1 Protein Homology CDS 248017 249201 . - 0 ID=cds-WP_038271175.1;Parent=gene-LPH39_RS01175;Dbxref=Genbank:WP_038271175.1;Name=WP_038271175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115444.1;locus_tag=LPH39_RS01175;product=D-alanyl-D-alanine carboxypeptidase family protein;protein_id=WP_038271175.1;transl_table=11 NZ_CP087677.1 RefSeq gene 250255 252507 . - . ID=gene-LPH39_RS01180;Name=katG;gbkey=Gene;gene=katG;gene_biotype=protein_coding;locus_tag=LPH39_RS01180;old_locus_tag=LPH39_01180 NZ_CP087677.1 Protein Homology CDS 250255 252507 . - 0 ID=cds-WP_114867156.1;Parent=gene-LPH39_RS01180;Dbxref=Genbank:WP_114867156.1;Name=WP_114867156.1;Ontology_term=GO:0006979,GO:0004096,GO:0004601;gbkey=CDS;gene=katG;go_function=catalase activity|0004096||IEA,peroxidase activity|0004601||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851311.1;locus_tag=LPH39_RS01180;product=catalase/peroxidase HPI;protein_id=WP_114867156.1;transl_table=11 NZ_CP087677.1 RefSeq gene 252979 253857 . - . ID=gene-LPH39_RS01185;Name=LPH39_RS01185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01185;old_locus_tag=LPH39_01185 NZ_CP087677.1 Protein Homology CDS 252979 253857 . - 0 ID=cds-WP_038271173.1;Parent=gene-LPH39_RS01185;Dbxref=Genbank:WP_038271173.1;Name=WP_038271173.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446026.1;locus_tag=LPH39_RS01185;product=J domain-containing protein;protein_id=WP_038271173.1;transl_table=11 NZ_CP087677.1 RefSeq gene 254009 254482 . - . ID=gene-LPH39_RS01190;Name=LPH39_RS01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01190;old_locus_tag=LPH39_01190 NZ_CP087677.1 Protein Homology CDS 254009 254482 . - 0 ID=cds-WP_038271172.1;Parent=gene-LPH39_RS01190;Dbxref=Genbank:WP_038271172.1;Name=WP_038271172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894682.1;locus_tag=LPH39_RS01190;product=Hsp20/alpha crystallin family protein;protein_id=WP_038271172.1;transl_table=11 NZ_CP087677.1 RefSeq gene 255138 257522 . - . ID=gene-LPH39_RS01195;Name=pbpC;gbkey=Gene;gene=pbpC;gene_biotype=protein_coding;locus_tag=LPH39_RS01195;old_locus_tag=LPH39_01195 NZ_CP087677.1 Protein Homology CDS 255138 257522 . - 0 ID=cds-WP_038271170.1;Parent=gene-LPH39_RS01195;Dbxref=Genbank:WP_038271170.1;Name=WP_038271170.1;Ontology_term=GO:0009252,GO:0003824,GO:0009274;gbkey=CDS;gene=pbpC;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=catalytic activity|0003824||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083423.1;locus_tag=LPH39_RS01195;product=penicillin-binding protein 1C;protein_id=WP_038271170.1;transl_table=11 NZ_CP087677.1 RefSeq gene 257716 257838 . - . ID=gene-LPH39_RS11950;Name=LPH39_RS11950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11950 NZ_CP087677.1 GeneMarkS-2+ CDS 257716 257838 . - 0 ID=cds-WP_267903153.1;Parent=gene-LPH39_RS11950;Dbxref=Genbank:WP_267903153.1;Name=WP_267903153.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11950;product=hypothetical protein;protein_id=WP_267903153.1;transl_table=11 NZ_CP087677.1 RefSeq gene 259457 262339 . + . ID=gene-LPH39_RS01200;Name=LPH39_RS01200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01200;old_locus_tag=LPH39_01200 NZ_CP087677.1 Protein Homology CDS 259457 262339 . + 0 ID=cds-WP_038271168.1;Parent=gene-LPH39_RS01200;Dbxref=Genbank:WP_038271168.1;Name=WP_038271168.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083424.1;locus_tag=LPH39_RS01200;product=TonB-dependent receptor;protein_id=WP_038271168.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 262445 262982 . - . ID=gene-LPH39_RS01205;Name=LPH39_RS01205;end_range=262982,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS01205;old_locus_tag=LPH39_01205;partial=true;pseudo=true;start_range=.,262445 NZ_CP087677.1 Protein Homology CDS 262445 262982 . - 0 ID=cds-LPH39_RS01205;Parent=gene-LPH39_RS01205;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006631,GO:0016491,GO:0016616;end_range=262982,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931134.1;locus_tag=LPH39_RS01205;partial=true;product=3-hydroxyacyl-CoA dehydrogenase family protein;pseudo=true;start_range=.,262445;transl_table=11 NZ_CP087677.1 RefSeq gene 263571 263801 . - . ID=gene-LPH39_RS01210;Name=LPH39_RS01210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01210;old_locus_tag=LPH39_01210 NZ_CP087677.1 GeneMarkS-2+ CDS 263571 263801 . - 0 ID=cds-WP_051482308.1;Parent=gene-LPH39_RS01210;Dbxref=Genbank:WP_051482308.1;Name=WP_051482308.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01210;product=hypothetical protein;protein_id=WP_051482308.1;transl_table=11 NZ_CP087677.1 RefSeq gene 263798 263965 . - . ID=gene-LPH39_RS01215;Name=LPH39_RS01215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01215;old_locus_tag=LPH39_01215 NZ_CP087677.1 GeneMarkS-2+ CDS 263798 263965 . - 0 ID=cds-WP_160165168.1;Parent=gene-LPH39_RS01215;Dbxref=Genbank:WP_160165168.1;Name=WP_160165168.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01215;product=hypothetical protein;protein_id=WP_160165168.1;transl_table=11 NZ_CP087677.1 RefSeq gene 264142 264762 . + . ID=gene-LPH39_RS01220;Name=rpoE;gbkey=Gene;gene=rpoE;gene_biotype=protein_coding;locus_tag=LPH39_RS01220;old_locus_tag=LPH39_01220 NZ_CP087677.1 Protein Homology CDS 264142 264762 . + 0 ID=cds-WP_038271167.1;Parent=gene-LPH39_RS01220;Dbxref=Genbank:WP_038271167.1;Name=WP_038271167.1;Ontology_term=GO:0006352,GO:0006979,GO:0016987,GO:0005737;gbkey=CDS;gene=rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962205.1;locus_tag=LPH39_RS01220;product=RNA polymerase sigma factor RpoE;protein_id=WP_038271167.1;transl_table=11 NZ_CP087677.1 RefSeq gene 264759 265499 . + . ID=gene-LPH39_RS01225;Name=LPH39_RS01225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01225;old_locus_tag=LPH39_01225 NZ_CP087677.1 Protein Homology CDS 264759 265499 . + 0 ID=cds-WP_038271166.1;Parent=gene-LPH39_RS01225;Dbxref=Genbank:WP_038271166.1;Name=WP_038271166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083426.1;locus_tag=LPH39_RS01225;product=sigma-E factor negative regulatory protein;protein_id=WP_038271166.1;transl_table=11 NZ_CP087677.1 RefSeq gene 265607 267151 . + . ID=gene-LPH39_RS01230;Name=LPH39_RS01230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01230;old_locus_tag=LPH39_01230 NZ_CP087677.1 Protein Homology CDS 265607 267151 . + 0 ID=cds-WP_038271165.1;Parent=gene-LPH39_RS01230;Dbxref=Genbank:WP_038271165.1;Name=WP_038271165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160027.1;locus_tag=LPH39_RS01230;product=DegQ family serine endoprotease;protein_id=WP_038271165.1;transl_table=11 NZ_CP087677.1 RefSeq gene 267332 269140 . + . ID=gene-LPH39_RS01235;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=LPH39_RS01235;old_locus_tag=LPH39_01235 NZ_CP087677.1 Protein Homology CDS 267332 269140 . + 0 ID=cds-WP_114867221.1;Parent=gene-LPH39_RS01235;Dbxref=Genbank:WP_114867221.1;Name=WP_114867221.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=lepA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083428.1;locus_tag=LPH39_RS01235;product=translation elongation factor 4;protein_id=WP_114867221.1;transl_table=11 NZ_CP087677.1 RefSeq gene 269243 270037 . + . ID=gene-LPH39_RS01240;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=LPH39_RS01240;old_locus_tag=LPH39_01240 NZ_CP087677.1 Protein Homology CDS 269243 270037 . + 0 ID=cds-WP_038271164.1;Parent=gene-LPH39_RS01240;Dbxref=Genbank:WP_038271164.1;Name=WP_038271164.1;Ontology_term=GO:0006465,GO:0009306,GO:0004252;gbkey=CDS;gene=lepB;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852731.1;locus_tag=LPH39_RS01240;product=signal peptidase I;protein_id=WP_038271164.1;transl_table=11 NZ_CP087677.1 RefSeq gene 270248 270433 . + . ID=gene-LPH39_RS01245;Name=LPH39_RS01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01245;old_locus_tag=LPH39_01245 NZ_CP087677.1 Protein Homology CDS 270248 270433 . + 0 ID=cds-WP_230428223.1;Parent=gene-LPH39_RS01245;Dbxref=Genbank:WP_230428223.1;Name=WP_230428223.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027463.2;locus_tag=LPH39_RS01245;product=DUF4845 domain-containing protein;protein_id=WP_230428223.1;transl_table=11 NZ_CP087677.1 RefSeq gene 270420 271103 . + . ID=gene-LPH39_RS01250;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=LPH39_RS01250;old_locus_tag=LPH39_01250 NZ_CP087677.1 Protein Homology CDS 270420 271103 . + 0 ID=cds-WP_038271163.1;Parent=gene-LPH39_RS01250;Dbxref=Genbank:WP_038271163.1;Name=WP_038271163.1;Ontology_term=GO:0006396,GO:0004525;gbkey=CDS;gene=rnc;go_function=ribonuclease III activity|0004525||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083431.1;locus_tag=LPH39_RS01250;product=ribonuclease III;protein_id=WP_038271163.1;transl_table=11 NZ_CP087677.1 RefSeq gene 271100 271996 . + . ID=gene-LPH39_RS01255;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=LPH39_RS01255;old_locus_tag=LPH39_01255 NZ_CP087677.1 Protein Homology CDS 271100 271996 . + 0 ID=cds-WP_038271162.1;Parent=gene-LPH39_RS01255;Dbxref=Genbank:WP_038271162.1;Name=WP_038271162.1;Ontology_term=GO:0003723,GO:0005525;gbkey=CDS;gene=era;go_function=RNA binding|0003723||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098038.1;locus_tag=LPH39_RS01255;product=GTPase Era;protein_id=WP_038271162.1;transl_table=11 NZ_CP087677.1 RefSeq gene 272216 272962 . + . ID=gene-LPH39_RS01260;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=LPH39_RS01260;old_locus_tag=LPH39_01260 NZ_CP087677.1 Protein Homology CDS 272216 272962 . + 0 ID=cds-WP_051482307.1;Parent=gene-LPH39_RS01260;Dbxref=Genbank:WP_051482307.1;Name=WP_051482307.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677;gbkey=CDS;gene=recO;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300430.1;locus_tag=LPH39_RS01260;product=DNA repair protein RecO;protein_id=WP_051482307.1;transl_table=11 NZ_CP087677.1 RefSeq gene 273071 274978 . - . ID=gene-LPH39_RS01265;Name=dxs;gbkey=Gene;gene=dxs;gene_biotype=protein_coding;locus_tag=LPH39_RS01265;old_locus_tag=LPH39_01265 NZ_CP087677.1 Protein Homology CDS 273071 274978 . - 0 ID=cds-WP_038271161.1;Parent=gene-LPH39_RS01265;Dbxref=Genbank:WP_038271161.1;Name=WP_038271161.1;Ontology_term=GO:0008615,GO:0009228,GO:0009240,GO:0008661,GO:0005737;gbkey=CDS;gene=dxs;go_component=cytoplasm|0005737||IEA;go_function=1-deoxy-D-xylulose-5-phosphate synthase activity|0008661||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA,thiamine biosynthetic process|0009228||IEA,isopentenyl diphosphate biosynthetic process|0009240||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088288.1;locus_tag=LPH39_RS01265;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=WP_038271161.1;transl_table=11 NZ_CP087677.1 RefSeq gene 275869 276036 . + . ID=gene-LPH39_RS01270;Name=LPH39_RS01270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01270;old_locus_tag=LPH39_01270 NZ_CP087677.1 GeneMarkS-2+ CDS 275869 276036 . + 0 ID=cds-WP_160165167.1;Parent=gene-LPH39_RS01270;Dbxref=Genbank:WP_160165167.1;Name=WP_160165167.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01270;product=hypothetical protein;protein_id=WP_160165167.1;transl_table=11 NZ_CP087677.1 RefSeq gene 276340 278079 . - . ID=gene-LPH39_RS01275;Name=LPH39_RS01275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01275;old_locus_tag=LPH39_01275 NZ_CP087677.1 Protein Homology CDS 276340 278079 . - 0 ID=cds-WP_038271160.1;Parent=gene-LPH39_RS01275;Dbxref=Genbank:WP_038271160.1;Name=WP_038271160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894699.1;locus_tag=LPH39_RS01275;product=cation acetate symporter;protein_id=WP_038271160.1;transl_table=11 NZ_CP087677.1 RefSeq gene 278076 278393 . - . ID=gene-LPH39_RS01280;Name=LPH39_RS01280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01280;old_locus_tag=LPH39_01280 NZ_CP087677.1 Protein Homology CDS 278076 278393 . - 0 ID=cds-WP_038271159.1;Parent=gene-LPH39_RS01280;Dbxref=Genbank:WP_038271159.1;Name=WP_038271159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451668.1;locus_tag=LPH39_RS01280;product=DUF485 domain-containing protein;protein_id=WP_038271159.1;transl_table=11 NZ_CP087677.1 RefSeq gene 279171 281114 . + . ID=gene-LPH39_RS01285;Name=acs;gbkey=Gene;gene=acs;gene_biotype=protein_coding;locus_tag=LPH39_RS01285;old_locus_tag=LPH39_01285 NZ_CP087677.1 Protein Homology CDS 279171 281114 . + 0 ID=cds-WP_038271158.1;Parent=gene-LPH39_RS01285;Dbxref=Genbank:WP_038271158.1;Name=WP_038271158.1;Ontology_term=GO:0019427,GO:0003987;gbkey=CDS;gene=acs;go_function=acetate-CoA ligase activity|0003987||IEA;go_process=acetyl-CoA biosynthetic process from acetate|0019427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852028.1;locus_tag=LPH39_RS01285;product=acetate--CoA ligase;protein_id=WP_038271158.1;transl_table=11 NZ_CP087677.1 RefSeq gene 282119 282703 . + . ID=gene-LPH39_RS01290;Name=LPH39_RS01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01290;old_locus_tag=LPH39_01290 NZ_CP087677.1 Protein Homology CDS 282119 282703 . + 0 ID=cds-WP_038271157.1;Parent=gene-LPH39_RS01290;Dbxref=Genbank:WP_038271157.1;Name=WP_038271157.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019337938.1;locus_tag=LPH39_RS01290;product=manganese efflux pump MntP family protein;protein_id=WP_038271157.1;transl_table=11 NZ_CP087677.1 RefSeq gene 284070 284939 . - . ID=gene-LPH39_RS01295;Name=LPH39_RS01295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01295;old_locus_tag=LPH39_01295 NZ_CP087677.1 Protein Homology CDS 284070 284939 . - 0 ID=cds-WP_038271155.1;Parent=gene-LPH39_RS01295;Dbxref=Genbank:WP_038271155.1;Name=WP_038271155.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024950.2;locus_tag=LPH39_RS01295;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_038271155.1;transl_table=11 NZ_CP087677.1 RefSeq gene 284942 285292 . - . ID=gene-LPH39_RS01300;Name=LPH39_RS01300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01300;old_locus_tag=LPH39_01300 NZ_CP087677.1 GeneMarkS-2+ CDS 284942 285292 . - 0 ID=cds-WP_152536610.1;Parent=gene-LPH39_RS01300;Dbxref=Genbank:WP_152536610.1;Name=WP_152536610.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01300;product=hypothetical protein;protein_id=WP_152536610.1;transl_table=11 NZ_CP087677.1 RefSeq gene 285857 286318 . + . ID=gene-LPH39_RS01305;Name=LPH39_RS01305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01305;old_locus_tag=LPH39_01305 NZ_CP087677.1 Protein Homology CDS 285857 286318 . + 0 ID=cds-WP_201745846.1;Parent=gene-LPH39_RS01305;Dbxref=Genbank:WP_201745846.1;Name=WP_201745846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382662.1;locus_tag=LPH39_RS01305;product=hypothetical protein;protein_id=WP_201745846.1;transl_table=11 NZ_CP087677.1 RefSeq gene 287382 289298 . + . ID=gene-LPH39_RS01310;Name=LPH39_RS01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01310;old_locus_tag=LPH39_01310 NZ_CP087677.1 Protein Homology CDS 287382 289298 . + 0 ID=cds-WP_081755433.1;Parent=gene-LPH39_RS01310;Dbxref=Genbank:WP_081755433.1;Name=WP_081755433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382663.1;locus_tag=LPH39_RS01310;product=PQQ-binding-like beta-propeller repeat protein;protein_id=WP_081755433.1;transl_table=11 NZ_CP087677.1 RefSeq gene 289788 291854 . - . ID=gene-LPH39_RS01315;Name=LPH39_RS01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01315;old_locus_tag=LPH39_01315 NZ_CP087677.1 Protein Homology CDS 289788 291854 . - 0 ID=cds-WP_038271153.1;Parent=gene-LPH39_RS01315;Dbxref=Genbank:WP_038271153.1;Name=WP_038271153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169463.1;locus_tag=LPH39_RS01315;product=S9 family peptidase;protein_id=WP_038271153.1;transl_table=11 NZ_CP087677.1 RefSeq gene 292281 294251 . - . ID=gene-LPH39_RS01320;Name=LPH39_RS01320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01320;old_locus_tag=LPH39_01320 NZ_CP087677.1 Protein Homology CDS 292281 294251 . - 0 ID=cds-WP_038271152.1;Parent=gene-LPH39_RS01320;Dbxref=Genbank:WP_038271152.1;Name=WP_038271152.1;Ontology_term=GO:0006857,GO:0035673,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=oligopeptide transmembrane transporter activity|0035673||IEA;go_process=oligopeptide transport|0006857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346708.1;locus_tag=LPH39_RS01320;product=oligopeptide transporter%2C OPT family;protein_id=WP_038271152.1;transl_table=11 NZ_CP087677.1 RefSeq gene 294288 294419 . - . ID=gene-LPH39_RS11955;Name=LPH39_RS11955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11955 NZ_CP087677.1 GeneMarkS-2+ CDS 294288 294419 . - 0 ID=cds-WP_267903154.1;Parent=gene-LPH39_RS11955;Dbxref=Genbank:WP_267903154.1;Name=WP_267903154.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11955;product=hypothetical protein;protein_id=WP_267903154.1;transl_table=11 NZ_CP087677.1 RefSeq gene 296056 297579 . + . ID=gene-LPH39_RS01325;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;locus_tag=LPH39_RS01325;old_locus_tag=LPH39_01325 NZ_CP087677.1 Protein Homology CDS 296056 297579 . + 0 ID=cds-WP_038271151.1;Parent=gene-LPH39_RS01325;Dbxref=Genbank:WP_038271151.1;Name=WP_038271151.1;Ontology_term=GO:0006072,GO:0004368,GO:0009331;gbkey=CDS;gene=glpD;go_component=glycerol-3-phosphate dehydrogenase complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894714.1;locus_tag=LPH39_RS01325;product=glycerol-3-phosphate dehydrogenase;protein_id=WP_038271151.1;transl_table=11 NZ_CP087677.1 RefSeq gene 297667 298494 . + . ID=gene-LPH39_RS01330;Name=LPH39_RS01330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01330;old_locus_tag=LPH39_01330 NZ_CP087677.1 Protein Homology CDS 297667 298494 . + 0 ID=cds-WP_038271150.1;Parent=gene-LPH39_RS01330;Dbxref=Genbank:WP_038271150.1;Name=WP_038271150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083443.1;locus_tag=LPH39_RS01330;product=aquaporin family protein;protein_id=WP_038271150.1;transl_table=11 NZ_CP087677.1 RefSeq gene 298549 300048 . + . ID=gene-LPH39_RS01335;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=LPH39_RS01335;old_locus_tag=LPH39_01335 NZ_CP087677.1 Protein Homology CDS 298549 300048 . + 0 ID=cds-WP_038271149.1;Parent=gene-LPH39_RS01335;Dbxref=Genbank:WP_038271149.1;Name=WP_038271149.1;Ontology_term=GO:0006071,GO:0004370;gbkey=CDS;gene=glpK;go_function=glycerol kinase activity|0004370||IEA;go_process=glycerol metabolic process|0006071||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368988.1;locus_tag=LPH39_RS01335;product=glycerol kinase GlpK;protein_id=WP_038271149.1;transl_table=11 NZ_CP087677.1 RefSeq gene 300882 301649 . - . ID=gene-LPH39_RS01340;Name=LPH39_RS01340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01340;old_locus_tag=LPH39_01340 NZ_CP087677.1 Protein Homology CDS 300882 301649 . - 0 ID=cds-WP_038271148.1;Parent=gene-LPH39_RS01340;Dbxref=Genbank:WP_038271148.1;Name=WP_038271148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903483.1;locus_tag=LPH39_RS01340;product=coniferyl-alcohol dehydrogenase;protein_id=WP_038271148.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 301976 302866 . + . ID=gene-LPH39_RS01345;Name=LPH39_RS01345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS01345;old_locus_tag=LPH39_01345;partial=true;pseudo=true;start_range=.,301976 NZ_CP087677.1 Protein Homology CDS 301976 302866 . + 0 ID=cds-LPH39_RS01345;Parent=gene-LPH39_RS01345;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574667.1;locus_tag=LPH39_RS01345;partial=true;product=D-hexose-6-phosphate mutarotase;pseudo=true;start_range=.,301976;transl_table=11 NZ_CP087677.1 RefSeq gene 303499 305775 . + . ID=gene-LPH39_RS01350;Name=metE;gbkey=Gene;gene=metE;gene_biotype=protein_coding;locus_tag=LPH39_RS01350;old_locus_tag=LPH39_01350 NZ_CP087677.1 Protein Homology CDS 303499 305775 . + 0 ID=cds-WP_038271147.1;Parent=gene-LPH39_RS01350;Dbxref=Genbank:WP_038271147.1;Name=WP_038271147.1;Ontology_term=GO:0008652,GO:0009086,GO:0003871,GO:0008270;gbkey=CDS;gene=metE;go_function=5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|0003871||IEA,zinc ion binding|0008270||IEA;go_process=amino acid biosynthetic process|0008652||IEA,methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894720.1;locus_tag=LPH39_RS01350;product=5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase;protein_id=WP_038271147.1;transl_table=11 NZ_CP087677.1 RefSeq gene 305840 306550 . + . ID=gene-LPH39_RS01355;Name=LPH39_RS01355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01355;old_locus_tag=LPH39_01355 NZ_CP087677.1 Protein Homology CDS 305840 306550 . + 0 ID=cds-WP_051482305.1;Parent=gene-LPH39_RS01355;Dbxref=Genbank:WP_051482305.1;Name=WP_051482305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017356868.1;locus_tag=LPH39_RS01355;product=epoxyqueuosine reductase QueH;protein_id=WP_051482305.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 306572 306788 . + . ID=gene-LPH39_RS01360;Name=LPH39_RS01360;end_range=306788,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS01360;old_locus_tag=LPH39_01360;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 306572 306788 . + 0 ID=cds-LPH39_RS01360;Parent=gene-LPH39_RS01360;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=306788,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083449.1;locus_tag=LPH39_RS01360;partial=true;product=isochorismatase family protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 306785 308431 . - . ID=gene-LPH39_RS01365;Name=LPH39_RS01365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01365;old_locus_tag=LPH39_01365 NZ_CP087677.1 Protein Homology CDS 306785 308431 . - 0 ID=cds-WP_038271146.1;Parent=gene-LPH39_RS01365;Dbxref=Genbank:WP_038271146.1;Name=WP_038271146.1;Ontology_term=GO:0006631,GO:0031956;gbkey=CDS;go_function=medium-chain fatty acid-CoA ligase activity|0031956||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852012.1;locus_tag=LPH39_RS01365;product=fatty acid CoA ligase family protein;protein_id=WP_038271146.1;transl_table=11 NZ_CP087677.1 RefSeq gene 309407 309730 . - . ID=gene-LPH39_RS01370;Name=LPH39_RS01370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01370;old_locus_tag=LPH39_01370 NZ_CP087677.1 Protein Homology CDS 309407 309730 . - 0 ID=cds-WP_171898085.1;Parent=gene-LPH39_RS01370;Dbxref=Genbank:WP_171898085.1;Name=WP_171898085.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156759.1;locus_tag=LPH39_RS01370;product=lipid-A-disaccharide synthase N-terminal domain-containing protein;protein_id=WP_171898085.1;transl_table=11 NZ_CP087677.1 RefSeq gene 309732 310454 . - . ID=gene-LPH39_RS01375;Name=LPH39_RS01375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01375;old_locus_tag=LPH39_01375 NZ_CP087677.1 Protein Homology CDS 309732 310454 . - 0 ID=cds-WP_038271143.1;Parent=gene-LPH39_RS01375;Dbxref=Genbank:WP_038271143.1;Name=WP_038271143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088269.1;locus_tag=LPH39_RS01375;product=glycosyltransferase;protein_id=WP_038271143.1;transl_table=11 NZ_CP087677.1 RefSeq gene 310535 311500 . - . ID=gene-LPH39_RS01380;Name=LPH39_RS01380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01380;old_locus_tag=LPH39_01380 NZ_CP087677.1 Protein Homology CDS 310535 311500 . - 0 ID=cds-WP_038271142.1;Parent=gene-LPH39_RS01380;Dbxref=Genbank:WP_038271142.1;Name=WP_038271142.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115470.1;locus_tag=LPH39_RS01380;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_038271142.1;transl_table=11 NZ_CP087677.1 RefSeq gene 311873 312805 . - . ID=gene-LPH39_RS01385;Name=LPH39_RS01385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01385;old_locus_tag=LPH39_01385 NZ_CP087677.1 Protein Homology CDS 311873 312805 . - 0 ID=cds-WP_038271141.1;Parent=gene-LPH39_RS01385;Dbxref=Genbank:WP_038271141.1;Name=WP_038271141.1;Ontology_term=GO:0000910,GO:0007059,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cytokinesis|0000910||IEA,chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088267.1;locus_tag=LPH39_RS01385;product=ParB/RepB/Spo0J family partition protein;protein_id=WP_038271141.1;transl_table=11 NZ_CP087677.1 RefSeq gene 312805 313599 . - . ID=gene-LPH39_RS01390;Name=LPH39_RS01390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01390;old_locus_tag=LPH39_01390 NZ_CP087677.1 Protein Homology CDS 312805 313599 . - 0 ID=cds-WP_038271140.1;Parent=gene-LPH39_RS01390;Dbxref=Genbank:WP_038271140.1;Name=WP_038271140.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088266.1;locus_tag=LPH39_RS01390;product=ParA family protein;protein_id=WP_038271140.1;transl_table=11 NZ_CP087677.1 RefSeq gene 314108 314350 . - . ID=gene-LPH39_RS01395;Name=LPH39_RS01395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01395;old_locus_tag=LPH39_01395 NZ_CP087677.1 GeneMarkS-2+ CDS 314108 314350 . - 0 ID=cds-WP_152536608.1;Parent=gene-LPH39_RS01395;Dbxref=Genbank:WP_152536608.1;Name=WP_152536608.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01395;product=hypothetical protein;protein_id=WP_152536608.1;transl_table=11 NZ_CP087677.1 RefSeq gene 315431 316393 . - . ID=gene-LPH39_RS01400;Name=LPH39_RS01400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01400;old_locus_tag=LPH39_01400 NZ_CP087677.1 Protein Homology CDS 315431 316393 . - 0 ID=cds-WP_038271138.1;Parent=gene-LPH39_RS01400;Dbxref=Genbank:WP_038271138.1;Name=WP_038271138.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083456.1;locus_tag=LPH39_RS01400;product=MBL fold metallo-hydrolase;protein_id=WP_038271138.1;transl_table=11 NZ_CP087677.1 RefSeq gene 317432 318712 . - . ID=gene-LPH39_RS01405;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=LPH39_RS01405;old_locus_tag=LPH39_01405 NZ_CP087677.1 Protein Homology CDS 317432 318712 . - 0 ID=cds-WP_038271137.1;Parent=gene-LPH39_RS01405;Dbxref=Genbank:WP_038271137.1;Name=WP_038271137.1;Ontology_term=GO:0006434,GO:0004828,GO:0005737;gbkey=CDS;gene=serS;go_component=cytoplasm|0005737||IEA;go_function=serine-tRNA ligase activity|0004828||IEA;go_process=seryl-tRNA aminoacylation|0006434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083457.1;locus_tag=LPH39_RS01405;product=serine--tRNA ligase;protein_id=WP_038271137.1;transl_table=11 NZ_CP087677.1 RefSeq gene 318832 319527 . + . ID=gene-LPH39_RS01410;Name=LPH39_RS01410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01410;old_locus_tag=LPH39_01410 NZ_CP087677.1 Protein Homology CDS 318832 319527 . + 0 ID=cds-WP_038271136.1;Parent=gene-LPH39_RS01410;Dbxref=Genbank:WP_038271136.1;Name=WP_038271136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852004.1;locus_tag=LPH39_RS01410;product=energy transducer TonB;protein_id=WP_038271136.1;transl_table=11 NZ_CP087677.1 RefSeq gene 320305 321654 . - . ID=gene-LPH39_RS01415;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=LPH39_RS01415;old_locus_tag=LPH39_01415 NZ_CP087677.1 Protein Homology CDS 320305 321654 . - 0 ID=cds-WP_038271135.1;Parent=gene-LPH39_RS01415;Dbxref=Genbank:WP_038271135.1;Name=WP_038271135.1;Ontology_term=GO:0009423,GO:0003866;gbkey=CDS;gene=aroA;go_function=3-phosphoshikimate 1-carboxyvinyltransferase activity|0003866||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091079.1;locus_tag=LPH39_RS01415;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_038271135.1;transl_table=11 NZ_CP087677.1 RefSeq gene 321743 322837 . - . ID=gene-LPH39_RS01420;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;locus_tag=LPH39_RS01420;old_locus_tag=LPH39_01420 NZ_CP087677.1 Protein Homology CDS 321743 322837 . - 0 ID=cds-WP_038271212.1;Parent=gene-LPH39_RS01420;Dbxref=Genbank:WP_038271212.1;Name=WP_038271212.1;Ontology_term=GO:0009094,GO:0004664;gbkey=CDS;gene=pheA;go_function=prephenate dehydratase activity|0004664||IEA;go_process=L-phenylalanine biosynthetic process|0009094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451090.1;locus_tag=LPH39_RS01420;product=prephenate dehydratase;protein_id=WP_038271212.1;transl_table=11 NZ_CP087677.1 RefSeq gene 322948 324033 . - . ID=gene-LPH39_RS01425;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=LPH39_RS01425;old_locus_tag=LPH39_01425 NZ_CP087677.1 Protein Homology CDS 322948 324033 . - 0 ID=cds-WP_038271211.1;Parent=gene-LPH39_RS01425;Dbxref=Genbank:WP_038271211.1;Name=WP_038271211.1;Ontology_term=GO:0006564,GO:0004648;gbkey=CDS;gene=serC;go_function=O-phospho-L-serine:2-oxoglutarate aminotransferase activity|0004648||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300927.1;locus_tag=LPH39_RS01425;product=phosphoserine transaminase;protein_id=WP_038271211.1;transl_table=11 NZ_CP087677.1 RefSeq gene 324707 325774 . + . ID=gene-LPH39_RS01430;Name=LPH39_RS01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01430;old_locus_tag=LPH39_01430 NZ_CP087677.1 Protein Homology CDS 324707 325774 . + 0 ID=cds-WP_051482304.1;Parent=gene-LPH39_RS01430;Dbxref=Genbank:WP_051482304.1;Name=WP_051482304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085874.1;locus_tag=LPH39_RS01430;product=energy transducer TonB;protein_id=WP_051482304.1;transl_table=11 NZ_CP087677.1 RefSeq gene 325873 327057 . - . ID=gene-LPH39_RS01435;Name=LPH39_RS01435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01435;old_locus_tag=LPH39_01435 NZ_CP087677.1 Protein Homology CDS 325873 327057 . - 0 ID=cds-WP_038271134.1;Parent=gene-LPH39_RS01435;Dbxref=Genbank:WP_038271134.1;Name=WP_038271134.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085873.1;locus_tag=LPH39_RS01435;product=ABC transporter permease;protein_id=WP_038271134.1;transl_table=11 NZ_CP087677.1 RefSeq gene 327054 327800 . - . ID=gene-LPH39_RS01440;Name=LPH39_RS01440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01440;old_locus_tag=LPH39_01440 NZ_CP087677.1 Protein Homology CDS 327054 327800 . - 0 ID=cds-WP_038271133.1;Parent=gene-LPH39_RS01440;Dbxref=Genbank:WP_038271133.1;Name=WP_038271133.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039041.1;locus_tag=LPH39_RS01440;product=ATP-binding cassette domain-containing protein;protein_id=WP_038271133.1;transl_table=11 NZ_CP087677.1 RefSeq gene 327797 329332 . - . ID=gene-LPH39_RS01445;Name=LPH39_RS01445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01445;old_locus_tag=LPH39_01445 NZ_CP087677.1 Protein Homology CDS 327797 329332 . - 0 ID=cds-WP_038271132.1;Parent=gene-LPH39_RS01445;Dbxref=Genbank:WP_038271132.1;Name=WP_038271132.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091066.1;locus_tag=LPH39_RS01445;product=alpha/beta hydrolase;protein_id=WP_038271132.1;transl_table=11 NZ_CP087677.1 RefSeq gene 330419 331762 . + . ID=gene-LPH39_RS01450;Name=LPH39_RS01450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01450;old_locus_tag=LPH39_01450 NZ_CP087677.1 Protein Homology CDS 330419 331762 . + 0 ID=cds-WP_038271131.1;Parent=gene-LPH39_RS01450;Dbxref=Genbank:WP_038271131.1;Name=WP_038271131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097976.1;locus_tag=LPH39_RS01450;product=serine hydrolase domain-containing protein;protein_id=WP_038271131.1;transl_table=11 NZ_CP087677.1 RefSeq gene 331900 332190 . - . ID=gene-LPH39_RS01455;Name=LPH39_RS01455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01455;old_locus_tag=LPH39_01455 NZ_CP087677.1 GeneMarkS-2+ CDS 331900 332190 . - 0 ID=cds-WP_114867158.1;Parent=gene-LPH39_RS01455;Dbxref=Genbank:WP_114867158.1;Name=WP_114867158.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01455;product=hypothetical protein;protein_id=WP_114867158.1;transl_table=11 NZ_CP087677.1 RefSeq gene 332526 333410 . - . ID=gene-LPH39_RS01460;Name=LPH39_RS01460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01460;old_locus_tag=LPH39_01460 NZ_CP087677.1 Protein Homology CDS 332526 333410 . - 0 ID=cds-WP_171898086.1;Parent=gene-LPH39_RS01460;Dbxref=Genbank:WP_171898086.1;Name=WP_171898086.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992724.1;locus_tag=LPH39_RS01460;product=hypothetical protein;protein_id=WP_171898086.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 333465 334545 . + . ID=gene-LPH39_RS01465;Name=LPH39_RS01465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS01465;old_locus_tag=LPH39_01465;pseudo=true NZ_CP087677.1 Protein Homology CDS 333465 334545 . + 0 ID=cds-LPH39_RS01465;Parent=gene-LPH39_RS01465;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation%3B frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260437.1;locus_tag=LPH39_RS01465;product=acetyl-CoA C-acyltransferase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 335739 336356 . + . ID=gene-LPH39_RS01470;Name=LPH39_RS01470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01470;old_locus_tag=LPH39_01470 NZ_CP087677.1 Protein Homology CDS 335739 336356 . + 0 ID=cds-WP_038272558.1;Parent=gene-LPH39_RS01470;Dbxref=Genbank:WP_038272558.1;Name=WP_038272558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368710.1;locus_tag=LPH39_RS01470;product=TetR/AcrR family transcriptional regulator;protein_id=WP_038272558.1;transl_table=11 NZ_CP087677.1 RefSeq gene 337745 338674 . + . ID=gene-LPH39_RS01475;Name=LPH39_RS01475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01475;old_locus_tag=LPH39_01475 NZ_CP087677.1 Protein Homology CDS 337745 338674 . + 0 ID=cds-WP_038272563.1;Parent=gene-LPH39_RS01475;Dbxref=Genbank:WP_038272563.1;Name=WP_038272563.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851692.1;locus_tag=LPH39_RS01475;product=metalloregulator ArsR/SmtB family transcription factor;protein_id=WP_038272563.1;transl_table=11 NZ_CP087677.1 RefSeq gene 339381 340583 . - . ID=gene-LPH39_RS01480;Name=LPH39_RS01480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01480;old_locus_tag=LPH39_01480 NZ_CP087677.1 Protein Homology CDS 339381 340583 . - 0 ID=cds-WP_038272553.1;Parent=gene-LPH39_RS01480;Dbxref=Genbank:WP_038272553.1;Name=WP_038272553.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051002.1;locus_tag=LPH39_RS01480;product=AGE family epimerase/isomerase;protein_id=WP_038272553.1;transl_table=11 NZ_CP087677.1 RefSeq gene 340580 341572 . - . ID=gene-LPH39_RS01485;Name=LPH39_RS01485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01485;old_locus_tag=LPH39_01485 NZ_CP087677.1 Protein Homology CDS 340580 341572 . - 0 ID=cds-WP_038272551.1;Parent=gene-LPH39_RS01485;Dbxref=Genbank:WP_038272551.1;Name=WP_038272551.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084974.1;locus_tag=LPH39_RS01485;product=carbohydrate kinase;protein_id=WP_038272551.1;transl_table=11 NZ_CP087677.1 RefSeq gene 341593 342873 . - . ID=gene-LPH39_RS01490;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=LPH39_RS01490;old_locus_tag=LPH39_01490 NZ_CP087677.1 Protein Homology CDS 341593 342873 . - 0 ID=cds-WP_038272549.1;Parent=gene-LPH39_RS01490;Dbxref=Genbank:WP_038272549.1;Name=WP_038272549.1;Ontology_term=GO:0015756,GO:0015535,GO:0005886;gbkey=CDS;gene=fucP;go_component=plasma membrane|0005886||IEA;go_function=fucose:proton symporter activity|0015535||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084976.1;locus_tag=LPH39_RS01490;product=L-fucose:H+ symporter permease;protein_id=WP_038272549.1;transl_table=11 NZ_CP087677.1 RefSeq gene 344676 345311 . - . ID=gene-LPH39_RS01495;Name=LPH39_RS01495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01495;old_locus_tag=LPH39_01495 NZ_CP087677.1 Protein Homology CDS 344676 345311 . - 0 ID=cds-WP_038272544.1;Parent=gene-LPH39_RS01495;Dbxref=Genbank:WP_038272544.1;Name=WP_038272544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087331.1;locus_tag=LPH39_RS01495;product=DUF2058 domain-containing protein;protein_id=WP_038272544.1;transl_table=11 NZ_CP087677.1 RefSeq gene 345349 345585 . - . ID=gene-LPH39_RS01500;Name=LPH39_RS01500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01500;old_locus_tag=LPH39_01500 NZ_CP087677.1 Protein Homology CDS 345349 345585 . - 0 ID=cds-WP_038272561.1;Parent=gene-LPH39_RS01500;Dbxref=Genbank:WP_038272561.1;Name=WP_038272561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087333.1;locus_tag=LPH39_RS01500;product=SlyX family protein;protein_id=WP_038272561.1;transl_table=11 NZ_CP087677.1 RefSeq gene 345578 346930 . - . ID=gene-LPH39_RS01505;Name=LPH39_RS01505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01505;old_locus_tag=LPH39_01505 NZ_CP087677.1 Protein Homology CDS 345578 346930 . - 0 ID=cds-WP_038272542.1;Parent=gene-LPH39_RS01505;Dbxref=Genbank:WP_038272542.1;Name=WP_038272542.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804407.1;locus_tag=LPH39_RS01505;product=UDP-glucose/GDP-mannose dehydrogenase family protein;protein_id=WP_038272542.1;transl_table=11 NZ_CP087677.1 RefSeq gene 346954 347910 . - . ID=gene-LPH39_RS01510;Name=LPH39_RS01510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01510;old_locus_tag=LPH39_01510 NZ_CP087677.1 Protein Homology CDS 346954 347910 . - 0 ID=cds-WP_038272539.1;Parent=gene-LPH39_RS01510;Dbxref=Genbank:WP_038272539.1;Name=WP_038272539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463036.1;locus_tag=LPH39_RS01510;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_038272539.1;transl_table=11 NZ_CP087677.1 RefSeq gene 348757 349329 . - . ID=gene-LPH39_RS01515;Name=LPH39_RS01515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01515;old_locus_tag=LPH39_01515 NZ_CP087677.1 Protein Homology CDS 348757 349329 . - 0 ID=cds-WP_038272538.1;Parent=gene-LPH39_RS01515;Dbxref=Genbank:WP_038272538.1;Name=WP_038272538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097981.1;locus_tag=LPH39_RS01515;product=glutathione peroxidase;protein_id=WP_038272538.1;transl_table=11 NZ_CP087677.1 RefSeq gene 349940 350083 . + . ID=gene-LPH39_RS01520;Name=LPH39_RS01520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01520;old_locus_tag=LPH39_01520 NZ_CP087677.1 GeneMarkS-2+ CDS 349940 350083 . + 0 ID=cds-WP_160199330.1;Parent=gene-LPH39_RS01520;Dbxref=Genbank:WP_160199330.1;Name=WP_160199330.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01520;product=hypothetical protein;protein_id=WP_160199330.1;transl_table=11 NZ_CP087677.1 RefSeq gene 350080 350955 . + . ID=gene-LPH39_RS01525;Name=LPH39_RS01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01525;old_locus_tag=LPH39_01525 NZ_CP087677.1 Protein Homology CDS 350080 350955 . + 0 ID=cds-WP_038272536.1;Parent=gene-LPH39_RS01525;Dbxref=Genbank:WP_038272536.1;Name=WP_038272536.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913764.1;locus_tag=LPH39_RS01525;product=ABC transporter ATP-binding protein;protein_id=WP_038272536.1;transl_table=11 NZ_CP087677.1 RefSeq gene 350952 351920 . + . ID=gene-LPH39_RS01530;Name=LPH39_RS01530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01530;old_locus_tag=LPH39_01530 NZ_CP087677.1 Protein Homology CDS 350952 351920 . + 0 ID=cds-WP_038272533.1;Parent=gene-LPH39_RS01530;Dbxref=Genbank:WP_038272533.1;Name=WP_038272533.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894098.1;locus_tag=LPH39_RS01530;product=hypothetical protein;protein_id=WP_038272533.1;transl_table=11 NZ_CP087677.1 RefSeq gene 352108 352239 . - . ID=gene-LPH39_RS11960;Name=LPH39_RS11960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11960 NZ_CP087677.1 GeneMarkS-2+ CDS 352108 352239 . - 0 ID=cds-WP_267903155.1;Parent=gene-LPH39_RS11960;Dbxref=Genbank:WP_267903155.1;Name=WP_267903155.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11960;product=hypothetical protein;protein_id=WP_267903155.1;transl_table=11 NZ_CP087677.1 RefSeq gene 353021 353449 . + . ID=gene-LPH39_RS01535;Name=LPH39_RS01535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01535;old_locus_tag=LPH39_01535 NZ_CP087677.1 Protein Homology CDS 353021 353449 . + 0 ID=cds-WP_038272529.1;Parent=gene-LPH39_RS01535;Dbxref=Genbank:WP_038272529.1;Name=WP_038272529.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852919.1;locus_tag=LPH39_RS01535;product=hypothetical protein;protein_id=WP_038272529.1;transl_table=11 NZ_CP087677.1 RefSeq gene 353655 355061 . - . ID=gene-LPH39_RS01540;Name=LPH39_RS01540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01540;old_locus_tag=LPH39_01540 NZ_CP087677.1 Protein Homology CDS 353655 355061 . - 0 ID=cds-WP_038272527.1;Parent=gene-LPH39_RS01540;Dbxref=Genbank:WP_038272527.1;Name=WP_038272527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852308.1;locus_tag=LPH39_RS01540;product=class II fumarate hydratase;protein_id=WP_038272527.1;transl_table=11 NZ_CP087677.1 RefSeq gene 355536 356903 . + . ID=gene-LPH39_RS01545;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=LPH39_RS01545;old_locus_tag=LPH39_01545 NZ_CP087677.1 Protein Homology CDS 355536 356903 . + 0 ID=cds-WP_038272523.1;Parent=gene-LPH39_RS01545;Dbxref=Genbank:WP_038272523.1;Name=WP_038272523.1;Ontology_term=GO:0006188,GO:0009152,GO:0004018;gbkey=CDS;gene=purB;go_function=N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|0004018||IEA;go_process=IMP biosynthetic process|0006188||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156796.1;locus_tag=LPH39_RS01545;product=adenylosuccinate lyase;protein_id=WP_038272523.1;transl_table=11 NZ_CP087677.1 RefSeq gene 357457 358719 . + . ID=gene-LPH39_RS01550;Name=LPH39_RS01550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01550;old_locus_tag=LPH39_01550 NZ_CP087677.1 Protein Homology CDS 357457 358719 . + 0 ID=cds-WP_038272522.1;Parent=gene-LPH39_RS01550;Dbxref=Genbank:WP_038272522.1;Name=WP_038272522.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337786.1;locus_tag=LPH39_RS01550;product=cupin domain-containing protein;protein_id=WP_038272522.1;transl_table=11 NZ_CP087677.1 RefSeq gene 360355 363183 . + . ID=gene-LPH39_RS01555;Name=LPH39_RS01555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01555;old_locus_tag=LPH39_01555 NZ_CP087677.1 Protein Homology CDS 360355 363183 . + 0 ID=cds-WP_114867160.1;Parent=gene-LPH39_RS01555;Dbxref=Genbank:WP_114867160.1;Name=WP_114867160.1;Ontology_term=GO:0006099,GO:0004591,GO:0030976;gbkey=CDS;go_function=oxoglutarate dehydrogenase (succinyl-transferring) activity|0004591||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507330.1;locus_tag=LPH39_RS01555;product=2-oxoglutarate dehydrogenase E1 component;protein_id=WP_114867160.1;transl_table=11 NZ_CP087677.1 RefSeq gene 363224 364387 . + . ID=gene-LPH39_RS01560;Name=sucB;gbkey=Gene;gene=sucB;gene_biotype=protein_coding;locus_tag=LPH39_RS01560;old_locus_tag=LPH39_01560 NZ_CP087677.1 Protein Homology CDS 363224 364387 . + 0 ID=cds-WP_038272655.1;Parent=gene-LPH39_RS01560;Dbxref=Genbank:WP_038272655.1;Name=WP_038272655.1;Ontology_term=GO:0006099,GO:0006554,GO:0004149,GO:0045252;gbkey=CDS;gene=sucB;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=dihydrolipoyllysine-residue succinyltransferase activity|0004149||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,lysine catabolic process|0006554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572000.1;locus_tag=LPH39_RS01560;product=dihydrolipoyllysine-residue succinyltransferase;protein_id=WP_038272655.1;transl_table=11 NZ_CP087677.1 RefSeq gene 364403 364573 . + . ID=gene-LPH39_RS01565;Name=LPH39_RS01565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01565;old_locus_tag=LPH39_01565 NZ_CP087677.1 GeneMarkS-2+ CDS 364403 364573 . + 0 ID=cds-WP_230428505.1;Parent=gene-LPH39_RS01565;Dbxref=Genbank:WP_230428505.1;Name=WP_230428505.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01565;product=hypothetical protein;protein_id=WP_230428505.1;transl_table=11 NZ_CP087677.1 RefSeq gene 364821 366257 . + . ID=gene-LPH39_RS01570;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=LPH39_RS01570;old_locus_tag=LPH39_01570 NZ_CP087677.1 Protein Homology CDS 364821 366257 . + 0 ID=cds-WP_038272654.1;Parent=gene-LPH39_RS01570;Dbxref=Genbank:WP_038272654.1;Name=WP_038272654.1;Ontology_term=GO:0006096,GO:0045454,GO:0051068,GO:0004148;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase activity|0004148||IEA;go_process=glycolytic process|0006096||IEA,cell redox homeostasis|0045454||IEA,dihydrolipoamide metabolic process|0051068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159046.1;locus_tag=LPH39_RS01570;product=dihydrolipoyl dehydrogenase;protein_id=WP_038272654.1;transl_table=11 NZ_CP087677.1 RefSeq gene 368367 368828 . - . ID=gene-LPH39_RS01575;Name=LPH39_RS01575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01575;old_locus_tag=LPH39_01575 NZ_CP087677.1 Protein Homology CDS 368367 368828 . - 0 ID=cds-WP_038272652.1;Parent=gene-LPH39_RS01575;Dbxref=Genbank:WP_038272652.1;Name=WP_038272652.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303254.1;locus_tag=LPH39_RS01575;product=glycine zipper 2TM domain-containing protein;protein_id=WP_038272652.1;transl_table=11 NZ_CP087677.1 RefSeq gene 370175 370975 . + . ID=gene-LPH39_RS01580;Name=LPH39_RS01580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01580;old_locus_tag=LPH39_01580 NZ_CP087677.1 Protein Homology CDS 370175 370975 . + 0 ID=cds-WP_038272649.1;Parent=gene-LPH39_RS01580;Dbxref=Genbank:WP_038272649.1;Name=WP_038272649.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451918.1;locus_tag=LPH39_RS01580;product=tRNA threonylcarbamoyladenosine dehydratase;protein_id=WP_038272649.1;transl_table=11 NZ_CP087677.1 RefSeq gene 372086 372274 . - . ID=gene-LPH39_RS01585;Name=LPH39_RS01585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01585;old_locus_tag=LPH39_01585 NZ_CP087677.1 GeneMarkS-2+ CDS 372086 372274 . - 0 ID=cds-WP_038272642.1;Parent=gene-LPH39_RS01585;Dbxref=Genbank:WP_038272642.1;Name=WP_038272642.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01585;product=hypothetical protein;protein_id=WP_038272642.1;transl_table=11 NZ_CP087677.1 RefSeq gene 372319 372495 . - . ID=gene-LPH39_RS01590;Name=LPH39_RS01590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01590;old_locus_tag=LPH39_01590 NZ_CP087677.1 Protein Homology CDS 372319 372495 . - 0 ID=cds-WP_230428225.1;Parent=gene-LPH39_RS01590;Dbxref=Genbank:WP_230428225.1;Name=WP_230428225.1;Ontology_term=GO:0042742;gbkey=CDS;go_process=defense response to bacterium|0042742||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607699.1;locus_tag=LPH39_RS01590;product=Blp family class II bacteriocin;protein_id=WP_230428225.1;transl_table=11 NZ_CP087677.1 RefSeq gene 373450 374139 . - . ID=gene-LPH39_RS01595;Name=crp;gbkey=Gene;gene=crp;gene_biotype=protein_coding;locus_tag=LPH39_RS01595;old_locus_tag=LPH39_01595 NZ_CP087677.1 Protein Homology CDS 373450 374139 . - 0 ID=cds-WP_038272640.1;Parent=gene-LPH39_RS01595;Dbxref=Genbank:WP_038272640.1;Name=WP_038272640.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=crp;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368067.1;locus_tag=LPH39_RS01595;product=cAMP-activated global transcriptional regulator CRP;protein_id=WP_038272640.1;transl_table=11 NZ_CP087677.1 RefSeq gene 374281 375075 . + . ID=gene-LPH39_RS01600;Name=speD;gbkey=Gene;gene=speD;gene_biotype=protein_coding;locus_tag=LPH39_RS01600;old_locus_tag=LPH39_01600 NZ_CP087677.1 Protein Homology CDS 374281 375075 . + 0 ID=cds-WP_038272638.1;Parent=gene-LPH39_RS01600;Dbxref=Genbank:WP_038272638.1;Name=WP_038272638.1;Ontology_term=GO:0008295,GO:0004014;gbkey=CDS;gene=speD;go_function=adenosylmethionine decarboxylase activity|0004014||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411315.1;locus_tag=LPH39_RS01600;product=adenosylmethionine decarboxylase;protein_id=WP_038272638.1;transl_table=11 NZ_CP087677.1 RefSeq gene 375329 375982 . - . ID=gene-LPH39_RS01605;Name=coq7;gbkey=Gene;gene=coq7;gene_biotype=protein_coding;locus_tag=LPH39_RS01605;old_locus_tag=LPH39_01605 NZ_CP087677.1 Protein Homology CDS 375329 375982 . - 0 ID=cds-WP_038272659.1;Parent=gene-LPH39_RS01605;Dbxref=Genbank:WP_038272659.1;Name=WP_038272659.1;Ontology_term=GO:0006744,GO:0004497;gbkey=CDS;gene=coq7;go_function=monooxygenase activity|0004497||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097769.1;locus_tag=LPH39_RS01605;product=2-polyprenyl-3-methyl-6-methoxy-1%2C4-benzoquinone monooxygenase;protein_id=WP_038272659.1;transl_table=11 NZ_CP087677.1 RefSeq gene 376151 376579 . + . ID=gene-LPH39_RS01610;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=LPH39_RS01610;old_locus_tag=LPH39_01610 NZ_CP087677.1 Protein Homology CDS 376151 376579 . + 0 ID=cds-WP_038272637.1;Parent=gene-LPH39_RS01610;Dbxref=Genbank:WP_038272637.1;Name=WP_038272637.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplM;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451009.1;locus_tag=LPH39_RS01610;product=50S ribosomal protein L13;protein_id=WP_038272637.1;transl_table=11 NZ_CP087677.1 RefSeq gene 376583 376975 . + . ID=gene-LPH39_RS01615;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=LPH39_RS01615;old_locus_tag=LPH39_01615 NZ_CP087677.1 Protein Homology CDS 376583 376975 . + 0 ID=cds-WP_038272635.1;Parent=gene-LPH39_RS01615;Dbxref=Genbank:WP_038272635.1;Name=WP_038272635.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083670.1;locus_tag=LPH39_RS01615;product=30S ribosomal protein S9;protein_id=WP_038272635.1;transl_table=11 NZ_CP087677.1 RefSeq gene 377099 378418 . - . ID=gene-LPH39_RS01620;Name=LPH39_RS01620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01620;old_locus_tag=LPH39_01620 NZ_CP087677.1 Protein Homology CDS 377099 378418 . - 0 ID=cds-WP_038272633.1;Parent=gene-LPH39_RS01620;Dbxref=Genbank:WP_038272633.1;Name=WP_038272633.1;Ontology_term=GO:0046912;gbkey=CDS;go_function=acyltransferase activity%2C acyl groups converted into alkyl on transfer|0046912||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156870.1;locus_tag=LPH39_RS01620;product=citrate synthase;protein_id=WP_038272633.1;transl_table=11 NZ_CP087677.1 RefSeq gene 378645 378887 . - . ID=gene-LPH39_RS01625;Name=LPH39_RS01625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01625;old_locus_tag=LPH39_01625 NZ_CP087677.1 Protein Homology CDS 378645 378887 . - 0 ID=cds-WP_038272630.1;Parent=gene-LPH39_RS01625;Dbxref=Genbank:WP_038272630.1;Name=WP_038272630.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087863.1;locus_tag=LPH39_RS01625;product=type B 50S ribosomal protein L31;protein_id=WP_038272630.1;transl_table=11 NZ_CP087677.1 RefSeq gene 379588 380289 . - . ID=gene-LPH39_RS01630;Name=tsaB;gbkey=Gene;gene=tsaB;gene_biotype=protein_coding;locus_tag=LPH39_RS01630;old_locus_tag=LPH39_01630 NZ_CP087677.1 Protein Homology CDS 379588 380289 . - 0 ID=cds-WP_038272628.1;Parent=gene-LPH39_RS01630;Dbxref=Genbank:WP_038272628.1;Name=WP_038272628.1;Ontology_term=GO:0006400,GO:0003725;gbkey=CDS;gene=tsaB;go_function=double-stranded RNA binding|0003725||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375169.1;locus_tag=LPH39_RS01630;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB;protein_id=WP_038272628.1;transl_table=11 NZ_CP087677.1 RefSeq gene 380568 381503 . - . ID=gene-LPH39_RS01635;Name=LPH39_RS01635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01635;old_locus_tag=LPH39_01635 NZ_CP087677.1 Protein Homology CDS 380568 381503 . - 0 ID=cds-WP_038272625.1;Parent=gene-LPH39_RS01635;Dbxref=Genbank:WP_038272625.1;Name=WP_038272625.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083674.1;locus_tag=LPH39_RS01635;product=LysR substrate-binding domain-containing protein;protein_id=WP_038272625.1;transl_table=11 NZ_CP087677.1 RefSeq gene 381608 383197 . - . ID=gene-LPH39_RS01640;Name=ahpF;gbkey=Gene;gene=ahpF;gene_biotype=protein_coding;locus_tag=LPH39_RS01640;old_locus_tag=LPH39_01640 NZ_CP087677.1 Protein Homology CDS 381608 383197 . - 0 ID=cds-WP_038272622.1;Parent=gene-LPH39_RS01640;Dbxref=Genbank:WP_038272622.1;Name=WP_038272622.1;Ontology_term=GO:0006805,GO:0009398,GO:0016668;gbkey=CDS;gene=ahpF;go_function=oxidoreductase activity%2C acting on a sulfur group of donors%2C NAD(P) as acceptor|0016668||IEA;go_process=xenobiotic metabolic process|0006805||IEA,FMN biosynthetic process|0009398||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488827.1;locus_tag=LPH39_RS01640;product=alkyl hydroperoxide reductase subunit F;protein_id=WP_038272622.1;transl_table=11 NZ_CP087677.1 RefSeq gene 383385 383945 . - . ID=gene-LPH39_RS01645;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=LPH39_RS01645;old_locus_tag=LPH39_01645 NZ_CP087677.1 Protein Homology CDS 383385 383945 . - 0 ID=cds-WP_038272620.1;Parent=gene-LPH39_RS01645;Dbxref=Genbank:WP_038272620.1;Name=WP_038272620.1;Ontology_term=GO:0006979,GO:0102039;gbkey=CDS;gene=ahpC;go_function=NADH-dependent peroxiredoxin activity|0102039||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003858764.1;locus_tag=LPH39_RS01645;product=alkyl hydroperoxide reductase subunit C;protein_id=WP_038272620.1;transl_table=11 NZ_CP087677.1 RefSeq gene 384408 392294 . - . ID=gene-LPH39_RS01650;Name=LPH39_RS01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01650;old_locus_tag=LPH39_01650 NZ_CP087677.1 Protein Homology CDS 384408 392294 . - 0 ID=cds-WP_171898087.1;Parent=gene-LPH39_RS01650;Dbxref=Genbank:WP_171898087.1;Name=WP_171898087.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083677.1;locus_tag=LPH39_RS01650;product=YadA-like family protein;protein_id=WP_171898087.1;transl_table=11 NZ_CP087677.1 RefSeq gene 393086 395380 . - . ID=gene-LPH39_RS01655;Name=gspD;gbkey=Gene;gene=gspD;gene_biotype=protein_coding;locus_tag=LPH39_RS01655;old_locus_tag=LPH39_01655 NZ_CP087677.1 Protein Homology CDS 393086 395380 . - 0 ID=cds-WP_038272922.1;Parent=gene-LPH39_RS01655;Dbxref=Genbank:WP_038272922.1;Name=WP_038272922.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspD;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851910.1;locus_tag=LPH39_RS01655;product=type II secretion system secretin GspD;protein_id=WP_038272922.1;transl_table=11 NZ_CP087677.1 RefSeq gene 395422 396237 . - . ID=gene-LPH39_RS01660;Name=LPH39_RS01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01660;old_locus_tag=LPH39_01660 NZ_CP087677.1 Protein Homology CDS 395422 396237 . - 0 ID=cds-WP_038272921.1;Parent=gene-LPH39_RS01660;Dbxref=Genbank:WP_038272921.1;Name=WP_038272921.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851909.1;locus_tag=LPH39_RS01660;product=hypothetical protein;protein_id=WP_038272921.1;transl_table=11 NZ_CP087677.1 RefSeq gene 396227 396859 . - . ID=gene-LPH39_RS01665;Name=gspM;gbkey=Gene;gene=gspM;gene_biotype=protein_coding;locus_tag=LPH39_RS01665;old_locus_tag=LPH39_01665 NZ_CP087677.1 Protein Homology CDS 396227 396859 . - 0 ID=cds-WP_038272918.1;Parent=gene-LPH39_RS01665;Dbxref=Genbank:WP_038272918.1;Name=WP_038272918.1;gbkey=CDS;gene=gspM;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083680.1;locus_tag=LPH39_RS01665;product=type II secretion system protein GspM;protein_id=WP_038272918.1;transl_table=11 NZ_CP087677.1 RefSeq gene 396840 397967 . - . ID=gene-LPH39_RS01670;Name=LPH39_RS01670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01670;old_locus_tag=LPH39_01670 NZ_CP087677.1 Protein Homology CDS 396840 397967 . - 0 ID=cds-WP_038272917.1;Parent=gene-LPH39_RS01670;Dbxref=Genbank:WP_038272917.1;Name=WP_038272917.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035907.1;locus_tag=LPH39_RS01670;product=PilN domain-containing protein;protein_id=WP_038272917.1;transl_table=11 NZ_CP087677.1 RefSeq gene 397964 398254 . - . ID=gene-LPH39_RS01675;Name=LPH39_RS01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01675;old_locus_tag=LPH39_01675 NZ_CP087677.1 GeneMarkS-2+ CDS 397964 398254 . - 0 ID=cds-WP_114867163.1;Parent=gene-LPH39_RS01675;Dbxref=Genbank:WP_114867163.1;Name=WP_114867163.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01675;product=general secretion pathway protein GspK;protein_id=WP_114867163.1;transl_table=11 NZ_CP087677.1 RefSeq gene 398500 398643 . - . ID=gene-LPH39_RS01680;Name=LPH39_RS01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01680;old_locus_tag=LPH39_01680 NZ_CP087677.1 GeneMarkS-2+ CDS 398500 398643 . - 0 ID=cds-WP_230428226.1;Parent=gene-LPH39_RS01680;Dbxref=Genbank:WP_230428226.1;Name=WP_230428226.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01680;product=hypothetical protein;protein_id=WP_230428226.1;transl_table=11 NZ_CP087677.1 RefSeq gene 398676 399521 . - . ID=gene-LPH39_RS01685;Name=LPH39_RS01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01685;old_locus_tag=LPH39_01685 NZ_CP087677.1 Protein Homology CDS 398676 399521 . - 0 ID=cds-WP_038272913.1;Parent=gene-LPH39_RS01685;Dbxref=Genbank:WP_038272913.1;Name=WP_038272913.1;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158144.1;locus_tag=LPH39_RS01685;product=type II secretion system protein GspK;protein_id=WP_038272913.1;transl_table=11 NZ_CP087677.1 RefSeq gene 399521 400147 . - . ID=gene-LPH39_RS01690;Name=LPH39_RS01690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01690;old_locus_tag=LPH39_01690 NZ_CP087677.1 Protein Homology CDS 399521 400147 . - 0 ID=cds-WP_038272911.1;Parent=gene-LPH39_RS01690;Dbxref=Genbank:WP_038272911.1;Name=WP_038272911.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852924.1;locus_tag=LPH39_RS01690;product=type II secretion system protein J;protein_id=WP_038272911.1;transl_table=11 NZ_CP087677.1 RefSeq gene 400144 400542 . - . ID=gene-LPH39_RS01695;Name=LPH39_RS01695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01695;old_locus_tag=LPH39_01695 NZ_CP087677.1 Protein Homology CDS 400144 400542 . - 0 ID=cds-WP_038272909.1;Parent=gene-LPH39_RS01695;Dbxref=Genbank:WP_038272909.1;Name=WP_038272909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158146.1;locus_tag=LPH39_RS01695;product=prepilin-type N-terminal cleavage/methylation domain-containing protein;protein_id=WP_038272909.1;transl_table=11 NZ_CP087677.1 RefSeq gene 400539 400994 . - . ID=gene-LPH39_RS01700;Name=LPH39_RS01700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01700;old_locus_tag=LPH39_01700 NZ_CP087677.1 Protein Homology CDS 400539 400994 . - 0 ID=cds-WP_114867164.1;Parent=gene-LPH39_RS01700;Dbxref=Genbank:WP_114867164.1;Name=WP_114867164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894021.1;locus_tag=LPH39_RS01700;product=type II secretion system protein GspH;protein_id=WP_114867164.1;transl_table=11 NZ_CP087677.1 RefSeq gene 401051 401485 . - . ID=gene-LPH39_RS01705;Name=gspG;gbkey=Gene;gene=gspG;gene_biotype=protein_coding;locus_tag=LPH39_RS01705;old_locus_tag=LPH39_01705 NZ_CP087677.1 Protein Homology CDS 401051 401485 . - 0 ID=cds-WP_038272904.1;Parent=gene-LPH39_RS01705;Dbxref=Genbank:WP_038272904.1;Name=WP_038272904.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspG;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088955.1;locus_tag=LPH39_RS01705;product=type II secretion system major pseudopilin GspG;protein_id=WP_038272904.1;transl_table=11 NZ_CP087677.1 RefSeq gene 401650 402867 . - . ID=gene-LPH39_RS01710;Name=LPH39_RS01710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01710;old_locus_tag=LPH39_01710 NZ_CP087677.1 Protein Homology CDS 401650 402867 . - 0 ID=cds-WP_038272902.1;Parent=gene-LPH39_RS01710;Dbxref=Genbank:WP_038272902.1;Name=WP_038272902.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504592.1;locus_tag=LPH39_RS01710;product=type II secretion system F family protein;protein_id=WP_038272902.1;transl_table=11 NZ_CP087677.1 RefSeq gene 402903 404618 . - . ID=gene-LPH39_RS01715;Name=gspE;gbkey=Gene;gene=gspE;gene_biotype=protein_coding;locus_tag=LPH39_RS01715;old_locus_tag=LPH39_01715 NZ_CP087677.1 Protein Homology CDS 402903 404618 . - 0 ID=cds-WP_038272901.1;Parent=gene-LPH39_RS01715;Dbxref=Genbank:WP_038272901.1;Name=WP_038272901.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspE;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010343590.1;locus_tag=LPH39_RS01715;product=type II secretion system ATPase GspE;protein_id=WP_038272901.1;transl_table=11 NZ_CP087677.1 RefSeq gene 404953 411231 . - . ID=gene-LPH39_RS01720;Name=LPH39_RS01720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01720;old_locus_tag=LPH39_01720 NZ_CP087677.1 Protein Homology CDS 404953 411231 . - 0 ID=cds-WP_114867165.1;Parent=gene-LPH39_RS01720;Dbxref=Genbank:WP_114867165.1;Name=WP_114867165.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015831.2;locus_tag=LPH39_RS01720;product=YadA-like family protein;protein_id=WP_114867165.1;transl_table=11 NZ_CP087677.1 RefSeq gene 412114 413025 . - . ID=gene-LPH39_RS01725;Name=LPH39_RS01725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01725;old_locus_tag=LPH39_01725 NZ_CP087677.1 Protein Homology CDS 412114 413025 . - 0 ID=cds-WP_038273112.1;Parent=gene-LPH39_RS01725;Dbxref=Genbank:WP_038273112.1;Name=WP_038273112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088966.1;locus_tag=LPH39_RS01725;product=AEC family transporter;protein_id=WP_038273112.1;transl_table=11 NZ_CP087677.1 RefSeq gene 413043 413942 . - . ID=gene-LPH39_RS01730;Name=LPH39_RS01730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01730;old_locus_tag=LPH39_01730 NZ_CP087677.1 Protein Homology CDS 413043 413942 . - 0 ID=cds-WP_230428227.1;Parent=gene-LPH39_RS01730;Dbxref=Genbank:WP_230428227.1;Name=WP_230428227.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: protein motif:HMM:NF014698.2;locus_tag=LPH39_RS01730;product=TauD/TfdA family dioxygenase;protein_id=WP_230428227.1;transl_table=11 NZ_CP087677.1 RefSeq gene 414511 415338 . + . ID=gene-LPH39_RS01735;Name=prmC;gbkey=Gene;gene=prmC;gene_biotype=protein_coding;locus_tag=LPH39_RS01735;old_locus_tag=LPH39_01735 NZ_CP087677.1 Protein Homology CDS 414511 415338 . + 0 ID=cds-WP_038273117.1;Parent=gene-LPH39_RS01735;Dbxref=Genbank:WP_038273117.1;Name=WP_038273117.1;Ontology_term=GO:0006412,GO:0018364,GO:0008757;gbkey=CDS;gene=prmC;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=translation|0006412||IEA,peptidyl-glutamine methylation|0018364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894013.1;locus_tag=LPH39_RS01735;product=peptide chain release factor N(5)-glutamine methyltransferase;protein_id=WP_038273117.1;transl_table=11 NZ_CP087677.1 RefSeq gene 415439 415777 . + . ID=gene-LPH39_RS01740;Name=LPH39_RS01740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01740;old_locus_tag=LPH39_01740 NZ_CP087677.1 Protein Homology CDS 415439 415777 . + 0 ID=cds-WP_038271972.1;Parent=gene-LPH39_RS01740;Dbxref=Genbank:WP_038271972.1;Name=WP_038271972.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003465222.1;locus_tag=LPH39_RS01740;product=DUF5713 family protein;protein_id=WP_038271972.1;transl_table=11 NZ_CP087677.1 RefSeq gene 415812 416753 . + . ID=gene-LPH39_RS01745;Name=pip;gbkey=Gene;gene=pip;gene_biotype=protein_coding;locus_tag=LPH39_RS01745;old_locus_tag=LPH39_01745 NZ_CP087677.1 Protein Homology CDS 415812 416753 . + 0 ID=cds-WP_038271970.1;Parent=gene-LPH39_RS01745;Dbxref=Genbank:WP_038271970.1;Name=WP_038271970.1;Ontology_term=GO:0030163,GO:0004177;gbkey=CDS;gene=pip;go_function=aminopeptidase activity|0004177||IEA;go_process=protein catabolic process|0030163||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852150.1;locus_tag=LPH39_RS01745;product=prolyl aminopeptidase;protein_id=WP_038271970.1;transl_table=11 NZ_CP087677.1 RefSeq gene 416834 417172 . - . ID=gene-LPH39_RS01750;Name=LPH39_RS01750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01750;old_locus_tag=LPH39_01750 NZ_CP087677.1 Protein Homology CDS 416834 417172 . - 0 ID=cds-WP_038271968.1;Parent=gene-LPH39_RS01750;Dbxref=Genbank:WP_038271968.1;Name=WP_038271968.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083693.1;locus_tag=LPH39_RS01750;product=PilZ domain-containing protein;protein_id=WP_038271968.1;transl_table=11 NZ_CP087677.1 RefSeq gene 417169 419640 . - . ID=gene-LPH39_RS01755;Name=LPH39_RS01755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01755;old_locus_tag=LPH39_01755 NZ_CP087677.1 Protein Homology CDS 417169 419640 . - 0 ID=cds-WP_038271966.1;Parent=gene-LPH39_RS01755;Dbxref=Genbank:WP_038271966.1;Name=WP_038271966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088987.1;locus_tag=LPH39_RS01755;product=DUF1631 domain-containing protein;protein_id=WP_038271966.1;transl_table=11 NZ_CP087677.1 RefSeq gene 419715 420869 . - . ID=gene-LPH39_RS01760;Name=hemW;gbkey=Gene;gene=hemW;gene_biotype=protein_coding;locus_tag=LPH39_RS01760;old_locus_tag=LPH39_01760 NZ_CP087677.1 Protein Homology CDS 419715 420869 . - 0 ID=cds-WP_038271990.1;Parent=gene-LPH39_RS01760;Dbxref=Genbank:WP_038271990.1;Name=WP_038271990.1;Ontology_term=GO:0006779,GO:0051989;gbkey=CDS;gene=hemW;go_function=coproporphyrinogen dehydrogenase activity|0051989||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156861.1;locus_tag=LPH39_RS01760;product=radical SAM family heme chaperone HemW;protein_id=WP_038271990.1;transl_table=11 NZ_CP087677.1 RefSeq gene 421084 421683 . - . ID=gene-LPH39_RS01765;Name=rdgB;gbkey=Gene;gene=rdgB;gene_biotype=protein_coding;locus_tag=LPH39_RS01765;old_locus_tag=LPH39_01765 NZ_CP087677.1 Protein Homology CDS 421084 421683 . - 0 ID=cds-WP_038271988.1;Parent=gene-LPH39_RS01765;Dbxref=Genbank:WP_038271988.1;Name=WP_038271988.1;Ontology_term=GO:0006281,GO:0016462;gbkey=CDS;gene=rdgB;go_function=pyrophosphatase activity|0016462||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097758.1;locus_tag=LPH39_RS01765;product=RdgB/HAM1 family non-canonical purine NTP pyrophosphatase;protein_id=WP_038271988.1;transl_table=11 NZ_CP087677.1 RefSeq gene 421782 422507 . - . ID=gene-LPH39_RS01770;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=LPH39_RS01770;old_locus_tag=LPH39_01770 NZ_CP087677.1 Protein Homology CDS 421782 422507 . - 0 ID=cds-WP_038271963.1;Parent=gene-LPH39_RS01770;Dbxref=Genbank:WP_038271963.1;Name=WP_038271963.1;Ontology_term=GO:0008033,GO:0004549;gbkey=CDS;gene=rph;go_function=tRNA-specific ribonuclease activity|0004549||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083697.1;locus_tag=LPH39_RS01770;product=ribonuclease PH;protein_id=WP_038271963.1;transl_table=11 NZ_CP087677.1 RefSeq gene 422617 423477 . + . ID=gene-LPH39_RS01775;Name=LPH39_RS01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01775;old_locus_tag=LPH39_01775 NZ_CP087677.1 Protein Homology CDS 422617 423477 . + 0 ID=cds-WP_038271959.1;Parent=gene-LPH39_RS01775;Dbxref=Genbank:WP_038271959.1;Name=WP_038271959.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996763.1;locus_tag=LPH39_RS01775;product=YicC family protein;protein_id=WP_038271959.1;transl_table=11 NZ_CP087677.1 RefSeq gene 423577 424191 . + . ID=gene-LPH39_RS01780;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=LPH39_RS01780;old_locus_tag=LPH39_01780 NZ_CP087677.1 Protein Homology CDS 423577 424191 . + 0 ID=cds-WP_038271956.1;Parent=gene-LPH39_RS01780;Dbxref=Genbank:WP_038271956.1;Name=WP_038271956.1;Ontology_term=GO:0015949,GO:0004385;gbkey=CDS;gene=gmk;go_function=guanylate kinase activity|0004385||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013534224.1;locus_tag=LPH39_RS01780;product=guanylate kinase;protein_id=WP_038271956.1;transl_table=11 NZ_CP087677.1 RefSeq gene 424414 424713 . + . ID=gene-LPH39_RS01785;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=LPH39_RS01785;old_locus_tag=LPH39_01785 NZ_CP087677.1 Protein Homology CDS 424414 424713 . + 0 ID=cds-WP_038271953.1;Parent=gene-LPH39_RS01785;Dbxref=Genbank:WP_038271953.1;Name=WP_038271953.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoZ;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812428.1;locus_tag=LPH39_RS01785;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_038271953.1;transl_table=11 NZ_CP087677.1 RefSeq gene 426033 427904 . - . ID=gene-LPH39_RS01790;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=LPH39_RS01790;old_locus_tag=LPH39_01790 NZ_CP087677.1 Protein Homology CDS 426033 427904 . - 0 ID=cds-WP_230428289.1;Parent=gene-LPH39_RS01790;Dbxref=Genbank:WP_230428289.1;Name=WP_230428289.1;Ontology_term=GO:0006790,GO:0003924,GO:0005525;gbkey=CDS;gene=cysN;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894002.1;locus_tag=LPH39_RS01790;product=sulfate adenylyltransferase subunit CysN;protein_id=WP_230428289.1;transl_table=11 NZ_CP087677.1 RefSeq gene 428012 428920 . - . ID=gene-LPH39_RS01795;Name=cysD;gbkey=Gene;gene=cysD;gene_biotype=protein_coding;locus_tag=LPH39_RS01795;old_locus_tag=LPH39_01795 NZ_CP087677.1 Protein Homology CDS 428012 428920 . - 0 ID=cds-WP_038271949.1;Parent=gene-LPH39_RS01795;Dbxref=Genbank:WP_038271949.1;Name=WP_038271949.1;Ontology_term=GO:0019419,GO:0004781;gbkey=CDS;gene=cysD;go_function=sulfate adenylyltransferase (ATP) activity|0004781||IEA;go_process=sulfate reduction|0019419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370926.1;locus_tag=LPH39_RS01795;product=sulfate adenylyltransferase subunit CysD;protein_id=WP_038271949.1;transl_table=11 NZ_CP087677.1 RefSeq gene 429127 430965 . + . ID=gene-LPH39_RS01800;Name=LPH39_RS01800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01800;old_locus_tag=LPH39_01800 NZ_CP087677.1 Protein Homology CDS 429127 430965 . + 0 ID=cds-WP_038271947.1;Parent=gene-LPH39_RS01800;Dbxref=Genbank:WP_038271947.1;Name=WP_038271947.1;Ontology_term=GO:0006790,GO:0004783,GO:0009337;gbkey=CDS;go_component=sulfite reductase complex (NADPH)|0009337||IEA;go_function=sulfite reductase (NADPH) activity|0004783||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504375.1;locus_tag=LPH39_RS01800;product=assimilatory sulfite reductase (NADPH) flavoprotein subunit;protein_id=WP_038271947.1;transl_table=11 NZ_CP087677.1 RefSeq gene 431089 432795 . + . ID=gene-LPH39_RS01805;Name=cysI;gbkey=Gene;gene=cysI;gene_biotype=protein_coding;locus_tag=LPH39_RS01805;old_locus_tag=LPH39_01805 NZ_CP087677.1 Protein Homology CDS 431089 432795 . + 0 ID=cds-WP_038271945.1;Parent=gene-LPH39_RS01805;Dbxref=Genbank:WP_038271945.1;Name=WP_038271945.1;Ontology_term=GO:0000103,GO:0004783;gbkey=CDS;gene=cysI;go_function=sulfite reductase (NADPH) activity|0004783||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089014.1;locus_tag=LPH39_RS01805;product=assimilatory sulfite reductase (NADPH) hemoprotein subunit;protein_id=WP_038271945.1;transl_table=11 NZ_CP087677.1 RefSeq gene 432792 433523 . + . ID=gene-LPH39_RS01810;Name=LPH39_RS01810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01810;old_locus_tag=LPH39_01810 NZ_CP087677.1 Protein Homology CDS 432792 433523 . + 0 ID=cds-WP_038271943.1;Parent=gene-LPH39_RS01810;Dbxref=Genbank:WP_038271943.1;Name=WP_038271943.1;Ontology_term=GO:0019379,GO:0003824,GO:0004604;gbkey=CDS;go_function=catalytic activity|0003824||IEA,phosphoadenylyl-sulfate reductase (thioredoxin) activity|0004604||IEA;go_process=sulfate assimilation%2C phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)|0019379||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038282.1;locus_tag=LPH39_RS01810;product=phosphoadenylyl-sulfate reductase;protein_id=WP_038271943.1;transl_table=11 NZ_CP087677.1 RefSeq gene 433762 433965 . - . ID=gene-LPH39_RS01815;Name=LPH39_RS01815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01815;old_locus_tag=LPH39_01815 NZ_CP087677.1 GeneMarkS-2+ CDS 433762 433965 . - 0 ID=cds-WP_162814103.1;Parent=gene-LPH39_RS01815;Dbxref=Genbank:WP_162814103.1;Name=WP_162814103.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01815;product=hypothetical protein;protein_id=WP_162814103.1;transl_table=11 NZ_CP087677.1 RefSeq gene 434735 436786 . - . ID=gene-LPH39_RS01820;Name=LPH39_RS01820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01820;old_locus_tag=LPH39_01820 NZ_CP087677.1 Protein Homology CDS 434735 436786 . - 0 ID=cds-WP_038271941.1;Parent=gene-LPH39_RS01820;Dbxref=Genbank:WP_038271941.1;Name=WP_038271941.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083706.1;locus_tag=LPH39_RS01820;product=TonB-dependent receptor;protein_id=WP_038271941.1;transl_table=11 NZ_CP087677.1 RefSeq gene 436826 436963 . + . ID=gene-LPH39_RS01825;Name=LPH39_RS01825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01825;old_locus_tag=LPH39_01825 NZ_CP087677.1 GeneMarkS-2+ CDS 436826 436963 . + 0 ID=cds-WP_160165203.1;Parent=gene-LPH39_RS01825;Dbxref=Genbank:WP_160165203.1;Name=WP_160165203.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01825;product=hypothetical protein;protein_id=WP_160165203.1;transl_table=11 NZ_CP087677.1 RefSeq gene 437708 438154 . + . ID=gene-LPH39_RS01830;Name=LPH39_RS01830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01830;old_locus_tag=LPH39_01830 NZ_CP087677.1 Protein Homology CDS 437708 438154 . + 0 ID=cds-WP_038271986.1;Parent=gene-LPH39_RS01830;Dbxref=Genbank:WP_038271986.1;Name=WP_038271986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893996.1;locus_tag=LPH39_RS01830;product=DUF192 domain-containing protein;protein_id=WP_038271986.1;transl_table=11 NZ_CP087677.1 RefSeq gene 438243 439088 . + . ID=gene-LPH39_RS01835;Name=LPH39_RS01835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01835;old_locus_tag=LPH39_01835 NZ_CP087677.1 Protein Homology CDS 438243 439088 . + 0 ID=cds-WP_051482355.1;Parent=gene-LPH39_RS01835;Dbxref=Genbank:WP_051482355.1;Name=WP_051482355.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851900.1;locus_tag=LPH39_RS01835;product=SirB1 family protein;protein_id=WP_051482355.1;transl_table=11 NZ_CP087677.1 RefSeq gene 440538 440954 . - . ID=gene-LPH39_RS01840;Name=LPH39_RS01840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01840;old_locus_tag=LPH39_01840 NZ_CP087677.1 Protein Homology CDS 440538 440954 . - 0 ID=cds-WP_038271936.1;Parent=gene-LPH39_RS01840;Dbxref=Genbank:WP_038271936.1;Name=WP_038271936.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083709.1;locus_tag=LPH39_RS01840;product=H-NS family nucleoid-associated regulatory protein;protein_id=WP_038271936.1;transl_table=11 NZ_CP087677.1 RefSeq gene 441374 441625 . + . ID=gene-LPH39_RS01845;Name=LPH39_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01845;old_locus_tag=LPH39_01845 NZ_CP087677.1 GeneMarkS-2+ CDS 441374 441625 . + 0 ID=cds-WP_160165202.1;Parent=gene-LPH39_RS01845;Dbxref=Genbank:WP_160165202.1;Name=WP_160165202.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01845;product=hypothetical protein;protein_id=WP_160165202.1;transl_table=11 NZ_CP087677.1 RefSeq gene 443469 443615 . - . ID=gene-LPH39_RS01850;Name=LPH39_RS01850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01850;old_locus_tag=LPH39_01850 NZ_CP087677.1 GeneMarkS-2+ CDS 443469 443615 . - 0 ID=cds-WP_160165201.1;Parent=gene-LPH39_RS01850;Dbxref=Genbank:WP_160165201.1;Name=WP_160165201.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01850;product=hypothetical protein;protein_id=WP_160165201.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 444390 444612 . - . ID=gene-LPH39_RS01855;Name=LPH39_RS01855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS01855;old_locus_tag=LPH39_01855;partial=true;pseudo=true;start_range=.,444390 NZ_CP087677.1 Protein Homology CDS 444390 444612 . - 0 ID=cds-LPH39_RS01855;Parent=gene-LPH39_RS01855;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LPH39_RS01855;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,444390;transl_table=11 NZ_CP087677.1 RefSeq gene 445461 445940 . + . ID=gene-LPH39_RS01860;Name=LPH39_RS01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01860;old_locus_tag=LPH39_01860 NZ_CP087677.1 Protein Homology CDS 445461 445940 . + 0 ID=cds-WP_038271933.1;Parent=gene-LPH39_RS01860;Dbxref=Genbank:WP_038271933.1;Name=WP_038271933.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852160.1;locus_tag=LPH39_RS01860;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_038271933.1;transl_table=11 NZ_CP087677.1 RefSeq gene 446229 446843 . - . ID=gene-LPH39_RS01865;Name=LPH39_RS01865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01865;old_locus_tag=LPH39_01865 NZ_CP087677.1 Protein Homology CDS 446229 446843 . - 0 ID=cds-WP_051482357.1;Parent=gene-LPH39_RS01865;Dbxref=Genbank:WP_051482357.1;Name=WP_051482357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852161.1;locus_tag=LPH39_RS01865;product=thioredoxin family protein;protein_id=WP_051482357.1;transl_table=11 NZ_CP087677.1 RefSeq gene 447500 449389 . - . ID=gene-LPH39_RS01870;Name=LPH39_RS01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01870;old_locus_tag=LPH39_01870 NZ_CP087677.1 Protein Homology CDS 447500 449389 . - 0 ID=cds-WP_038271983.1;Parent=gene-LPH39_RS01870;Dbxref=Genbank:WP_038271983.1;Name=WP_038271983.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852162.1;locus_tag=LPH39_RS01870;product=M1 family metallopeptidase;protein_id=WP_038271983.1;transl_table=11 NZ_CP087677.1 RefSeq gene 449737 450498 . - . ID=gene-LPH39_RS01875;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=LPH39_RS01875;old_locus_tag=LPH39_01875 NZ_CP087677.1 Protein Homology CDS 449737 450498 . - 0 ID=cds-WP_038271927.1;Parent=gene-LPH39_RS01875;Dbxref=Genbank:WP_038271927.1;Name=WP_038271927.1;Ontology_term=GO:0008168;gbkey=CDS;gene=ubiE;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852163.1;locus_tag=LPH39_RS01875;product=bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase UbiE;protein_id=WP_038271927.1;transl_table=11 NZ_CP087677.1 RefSeq gene 450914 452269 . + . ID=gene-LPH39_RS01880;Name=LPH39_RS01880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01880;old_locus_tag=LPH39_01880 NZ_CP087677.1 Protein Homology CDS 450914 452269 . + 0 ID=cds-WP_038271981.1;Parent=gene-LPH39_RS01880;Dbxref=Genbank:WP_038271981.1;Name=WP_038271981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893987.1;locus_tag=LPH39_RS01880;product=DUF2252 family protein;protein_id=WP_038271981.1;transl_table=11 NZ_CP087677.1 RefSeq gene 452464 453837 . - . ID=gene-LPH39_RS01885;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=LPH39_RS01885;old_locus_tag=LPH39_01885 NZ_CP087677.1 Protein Homology CDS 452464 453837 . - 0 ID=cds-WP_038271925.1;Parent=gene-LPH39_RS01885;Dbxref=Genbank:WP_038271925.1;Name=WP_038271925.1;Ontology_term=GO:0005524,GO:0008233,GO:0016887;gbkey=CDS;gene=hslU;go_function=ATP binding|0005524||IEA,peptidase activity|0008233||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850946.1;locus_tag=LPH39_RS01885;product=ATP-dependent protease ATPase subunit HslU;protein_id=WP_038271925.1;transl_table=11 NZ_CP087677.1 RefSeq gene 453904 454455 . - . ID=gene-LPH39_RS01890;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=LPH39_RS01890;old_locus_tag=LPH39_01890 NZ_CP087677.1 Protein Homology CDS 453904 454455 . - 0 ID=cds-WP_038271923.1;Parent=gene-LPH39_RS01890;Dbxref=Genbank:WP_038271923.1;Name=WP_038271923.1;Ontology_term=GO:0051603,GO:0004298;gbkey=CDS;gene=hslV;go_function=threonine-type endopeptidase activity|0004298||IEA;go_process=proteolysis involved in protein catabolic process|0051603||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260360.1;locus_tag=LPH39_RS01890;product=ATP-dependent protease subunit HslV;protein_id=WP_038271923.1;transl_table=11 NZ_CP087677.1 RefSeq gene 455847 456356 . + . ID=gene-LPH39_RS01895;Name=LPH39_RS01895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01895;old_locus_tag=LPH39_01895 NZ_CP087677.1 GeneMarkS-2+ CDS 455847 456356 . + 0 ID=cds-WP_038271920.1;Parent=gene-LPH39_RS01895;Dbxref=Genbank:WP_038271920.1;Name=WP_038271920.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01895;product=hypothetical protein;protein_id=WP_038271920.1;transl_table=11 NZ_CP087677.1 RefSeq gene 456823 457707 . - . ID=gene-LPH39_RS01900;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=LPH39_RS01900;old_locus_tag=LPH39_01900 NZ_CP087677.1 Protein Homology CDS 456823 457707 . - 0 ID=cds-WP_038271918.1;Parent=gene-LPH39_RS01900;Dbxref=Genbank:WP_038271918.1;Name=WP_038271918.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerC;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089050.1;locus_tag=LPH39_RS01900;product=tyrosine recombinase XerC;protein_id=WP_038271918.1;transl_table=11 NZ_CP087677.1 RefSeq gene 457734 458405 . - . ID=gene-LPH39_RS01905;Name=LPH39_RS01905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01905;old_locus_tag=LPH39_01905 NZ_CP087677.1 Protein Homology CDS 457734 458405 . - 0 ID=cds-WP_038271916.1;Parent=gene-LPH39_RS01905;Dbxref=Genbank:WP_038271916.1;Name=WP_038271916.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482765.1;locus_tag=LPH39_RS01905;product=DUF484 family protein;protein_id=WP_038271916.1;transl_table=11 NZ_CP087677.1 RefSeq gene 458402 459256 . - . ID=gene-LPH39_RS01910;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=LPH39_RS01910;old_locus_tag=LPH39_01910 NZ_CP087677.1 Protein Homology CDS 458402 459256 . - 0 ID=cds-WP_038271979.1;Parent=gene-LPH39_RS01910;Dbxref=Genbank:WP_038271979.1;Name=WP_038271979.1;Ontology_term=GO:0009089,GO:0008837;gbkey=CDS;gene=dapF;go_function=diaminopimelate epimerase activity|0008837||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850942.1;locus_tag=LPH39_RS01910;product=diaminopimelate epimerase;protein_id=WP_038271979.1;transl_table=11 NZ_CP087677.1 RefSeq gene 459266 459475 . - . ID=gene-LPH39_RS01915;Name=LPH39_RS01915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01915;old_locus_tag=LPH39_01915 NZ_CP087677.1 Protein Homology CDS 459266 459475 . - 0 ID=cds-WP_038271914.1;Parent=gene-LPH39_RS01915;Dbxref=Genbank:WP_038271914.1;Name=WP_038271914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089059.1;locus_tag=LPH39_RS01915;product=lipoprotein;protein_id=WP_038271914.1;transl_table=11 NZ_CP087677.1 RefSeq gene 459566 461725 . - . ID=gene-LPH39_RS01920;Name=LPH39_RS01920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01920;old_locus_tag=LPH39_01920 NZ_CP087677.1 Protein Homology CDS 459566 461725 . - 0 ID=cds-WP_038271911.1;Parent=gene-LPH39_RS01920;Dbxref=Genbank:WP_038271911.1;Name=WP_038271911.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607685.1;locus_tag=LPH39_RS01920;product=oligopeptidase B;protein_id=WP_038271911.1;transl_table=11 NZ_CP087677.1 RefSeq gene 463146 463613 . - . ID=gene-LPH39_RS01925;Name=LPH39_RS01925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01925;old_locus_tag=LPH39_01925 NZ_CP087677.1 Protein Homology CDS 463146 463613 . - 0 ID=cds-WP_038271909.1;Parent=gene-LPH39_RS01925;Dbxref=Genbank:WP_038271909.1;Name=WP_038271909.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237451.1;locus_tag=LPH39_RS01925;product=SET domain-containing protein-lysine N-methyltransferase;protein_id=WP_038271909.1;transl_table=11 NZ_CP087677.1 RefSeq gene 463778 464239 . + . ID=gene-LPH39_RS01930;Name=LPH39_RS01930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01930;old_locus_tag=LPH39_01930 NZ_CP087677.1 Protein Homology CDS 463778 464239 . + 0 ID=cds-WP_038271908.1;Parent=gene-LPH39_RS01930;Dbxref=Genbank:WP_038271908.1;Name=WP_038271908.1;Ontology_term=GO:0006355,GO:0016226;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369303.1;locus_tag=LPH39_RS01930;product=SUF system Fe-S cluster assembly regulator;protein_id=WP_038271908.1;transl_table=11 NZ_CP087677.1 RefSeq gene 464259 465716 . + . ID=gene-LPH39_RS01935;Name=sufB;gbkey=Gene;gene=sufB;gene_biotype=protein_coding;locus_tag=LPH39_RS01935;old_locus_tag=LPH39_01935 NZ_CP087677.1 Protein Homology CDS 464259 465716 . + 0 ID=cds-WP_038271907.1;Parent=gene-LPH39_RS01935;Dbxref=Genbank:WP_038271907.1;Name=WP_038271907.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufB;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902344.1;locus_tag=LPH39_RS01935;product=Fe-S cluster assembly protein SufB;protein_id=WP_038271907.1;transl_table=11 NZ_CP087677.1 RefSeq gene 465846 466685 . + . ID=gene-LPH39_RS01940;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=LPH39_RS01940;old_locus_tag=LPH39_01940 NZ_CP087677.1 Protein Homology CDS 465846 466685 . + 0 ID=cds-WP_051482354.1;Parent=gene-LPH39_RS01940;Dbxref=Genbank:WP_051482354.1;Name=WP_051482354.1;Ontology_term=GO:0016226,GO:0005524;gbkey=CDS;gene=sufC;go_function=ATP binding|0005524||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893976.1;locus_tag=LPH39_RS01940;product=Fe-S cluster assembly ATPase SufC;protein_id=WP_051482354.1;transl_table=11 NZ_CP087677.1 RefSeq gene 466682 467950 . + . ID=gene-LPH39_RS01945;Name=sufD;gbkey=Gene;gene=sufD;gene_biotype=protein_coding;locus_tag=LPH39_RS01945;old_locus_tag=LPH39_01945 NZ_CP087677.1 Protein Homology CDS 466682 467950 . + 0 ID=cds-WP_038271905.1;Parent=gene-LPH39_RS01945;Dbxref=Genbank:WP_038271905.1;Name=WP_038271905.1;Ontology_term=GO:0016226,GO:0005198;gbkey=CDS;gene=sufD;go_function=structural molecule activity|0005198||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090672.1;locus_tag=LPH39_RS01945;product=Fe-S cluster assembly protein SufD;protein_id=WP_038271905.1;transl_table=11 NZ_CP087677.1 RefSeq gene 467938 469188 . + . ID=gene-LPH39_RS01950;Name=LPH39_RS01950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01950;old_locus_tag=LPH39_01950 NZ_CP087677.1 Protein Homology CDS 467938 469188 . + 0 ID=cds-WP_038271903.1;Parent=gene-LPH39_RS01950;Dbxref=Genbank:WP_038271903.1;Name=WP_038271903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337770.1;locus_tag=LPH39_RS01950;product=cysteine desulfurase;protein_id=WP_038271903.1;transl_table=11 NZ_CP087677.1 RefSeq gene 469504 469833 . + . ID=gene-LPH39_RS01955;Name=LPH39_RS01955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01955;old_locus_tag=LPH39_01955 NZ_CP087677.1 Protein Homology CDS 469504 469833 . + 0 ID=cds-WP_081755464.1;Parent=gene-LPH39_RS01955;Dbxref=Genbank:WP_081755464.1;Name=WP_081755464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508448.1;locus_tag=LPH39_RS01955;product=non-heme iron oxygenase ferredoxin subunit;protein_id=WP_081755464.1;transl_table=11 NZ_CP087677.1 RefSeq gene 470701 471846 . + . ID=gene-LPH39_RS01960;Name=LPH39_RS01960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01960;old_locus_tag=LPH39_01960 NZ_CP087677.1 Protein Homology CDS 470701 471846 . + 0 ID=cds-WP_038271897.1;Parent=gene-LPH39_RS01960;Dbxref=Genbank:WP_038271897.1;Name=WP_038271897.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850935.1;locus_tag=LPH39_RS01960;product=glycosyltransferase family 4 protein;protein_id=WP_038271897.1;transl_table=11 NZ_CP087677.1 RefSeq gene 471843 472697 . + . ID=gene-LPH39_RS01965;Name=LPH39_RS01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01965;old_locus_tag=LPH39_01965 NZ_CP087677.1 Protein Homology CDS 471843 472697 . + 0 ID=cds-WP_038271895.1;Parent=gene-LPH39_RS01965;Dbxref=Genbank:WP_038271895.1;Name=WP_038271895.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083728.1;locus_tag=LPH39_RS01965;product=polysaccharide deacetylase family protein;protein_id=WP_038271895.1;transl_table=11 NZ_CP087677.1 RefSeq gene 472818 474164 . - . ID=gene-LPH39_RS01970;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=LPH39_RS01970;old_locus_tag=LPH39_01970 NZ_CP087677.1 Protein Homology CDS 472818 474164 . - 0 ID=cds-WP_038271893.1;Parent=gene-LPH39_RS01970;Dbxref=Genbank:WP_038271893.1;Name=WP_038271893.1;Ontology_term=GO:0005975,GO:0000287,GO:0008966,GO:0016868;gbkey=CDS;gene=glmM;go_function=magnesium ion binding|0000287||IEA,phosphoglucosamine mutase activity|0008966||IEA,intramolecular transferase activity%2C phosphotransferases|0016868||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300396.1;locus_tag=LPH39_RS01970;product=phosphoglucosamine mutase;protein_id=WP_038271893.1;transl_table=11 NZ_CP087677.1 RefSeq gene 474161 475057 . - . ID=gene-LPH39_RS01975;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;locus_tag=LPH39_RS01975;old_locus_tag=LPH39_01975 NZ_CP087677.1 Protein Homology CDS 474161 475057 . - 0 ID=cds-WP_038271891.1;Parent=gene-LPH39_RS01975;Dbxref=Genbank:WP_038271891.1;Name=WP_038271891.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accD;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893968.1;locus_tag=LPH39_RS01975;product=acetyl-CoA carboxylase%2C carboxyltransferase subunit beta;protein_id=WP_038271891.1;transl_table=11 NZ_CP087677.1 RefSeq gene 475283 475576 . - . ID=gene-LPH39_RS01980;Name=LPH39_RS01980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01980;old_locus_tag=LPH39_01980 NZ_CP087677.1 GeneMarkS-2+ CDS 475283 475576 . - 0 ID=cds-WP_152536645.1;Parent=gene-LPH39_RS01980;Dbxref=Genbank:WP_152536645.1;Name=WP_152536645.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01980;product=hypothetical protein;protein_id=WP_152536645.1;transl_table=11 NZ_CP087677.1 RefSeq gene 475585 475821 . - . ID=gene-LPH39_RS01985;Name=LPH39_RS01985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01985;old_locus_tag=LPH39_01985 NZ_CP087677.1 GeneMarkS-2+ CDS 475585 475821 . - 0 ID=cds-WP_038271889.1;Parent=gene-LPH39_RS01985;Dbxref=Genbank:WP_038271889.1;Name=WP_038271889.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01985;product=hypothetical protein;protein_id=WP_038271889.1;transl_table=11 NZ_CP087677.1 RefSeq gene 476474 476752 . + . ID=gene-LPH39_RS01990;Name=LPH39_RS01990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS01990;old_locus_tag=LPH39_01990 NZ_CP087677.1 GeneMarkS-2+ CDS 476474 476752 . + 0 ID=cds-WP_162814077.1;Parent=gene-LPH39_RS01990;Dbxref=Genbank:WP_162814077.1;Name=WP_162814077.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS01990;product=hypothetical protein;protein_id=WP_162814077.1;transl_table=11 NZ_CP087677.1 RefSeq gene 476771 477931 . - . ID=gene-LPH39_RS01995;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=LPH39_RS01995;old_locus_tag=LPH39_01995 NZ_CP087677.1 Protein Homology CDS 476771 477931 . - 0 ID=cds-WP_171898054.1;Parent=gene-LPH39_RS01995;Dbxref=Genbank:WP_171898054.1;Name=WP_171898054.1;Ontology_term=GO:0006040,GO:0008448;gbkey=CDS;gene=nagA;go_function=N-acetylglucosamine-6-phosphate deacetylase activity|0008448||IEA;go_process=amino sugar metabolic process|0006040||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974066.1;locus_tag=LPH39_RS01995;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_171898054.1;transl_table=11 NZ_CP087677.1 RefSeq gene 477928 478956 . - . ID=gene-LPH39_RS02000;Name=LPH39_RS02000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02000;old_locus_tag=LPH39_02000 NZ_CP087677.1 Protein Homology CDS 477928 478956 . - 0 ID=cds-WP_038271975.1;Parent=gene-LPH39_RS02000;Dbxref=Genbank:WP_038271975.1;Name=WP_038271975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005419331.1;locus_tag=LPH39_RS02000;product=SIS domain-containing protein;protein_id=WP_038271975.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 478965 480021 . - . ID=gene-LPH39_RS02005;Name=LPH39_RS02005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS02005;old_locus_tag=LPH39_02005;pseudo=true NZ_CP087677.1 Protein Homology CDS 478965 480021 . - 0 ID=cds-LPH39_RS02005;Parent=gene-LPH39_RS02005;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850932.1;locus_tag=LPH39_RS02005;product=LacI family DNA-binding transcriptional regulator;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 480025 481314 . - . ID=gene-LPH39_RS02010;Name=gluP;gbkey=Gene;gene=gluP;gene_biotype=protein_coding;locus_tag=LPH39_RS02010;old_locus_tag=LPH39_02010 NZ_CP087677.1 Protein Homology CDS 480025 481314 . - 0 ID=cds-WP_038271879.1;Parent=gene-LPH39_RS02010;Dbxref=Genbank:WP_038271879.1;Name=WP_038271879.1;gbkey=CDS;gene=gluP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850931.1;locus_tag=LPH39_RS02010;product=glucose/galactose MFS transporter;protein_id=WP_038271879.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 481379 481540 . - . ID=gene-LPH39_RS02015;Name=LPH39_RS02015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS02015;old_locus_tag=LPH39_02015;partial=true;pseudo=true;start_range=.,481379 NZ_CP087677.1 Protein Homology CDS 481379 481540 . - 0 ID=cds-LPH39_RS02015;Parent=gene-LPH39_RS02015;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156688.1;locus_tag=LPH39_RS02015;partial=true;product=GntR family transcriptional regulator;pseudo=true;start_range=.,481379;transl_table=11 NZ_CP087677.1 RefSeq gene 481945 482949 . + . ID=gene-LPH39_RS02020;Name=LPH39_RS02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02020;old_locus_tag=LPH39_02020 NZ_CP087677.1 Protein Homology CDS 481945 482949 . + 0 ID=cds-WP_114867222.1;Parent=gene-LPH39_RS02020;Dbxref=Genbank:WP_114867222.1;Name=WP_114867222.1;Ontology_term=GO:0006096,GO:0004340;gbkey=CDS;go_function=glucokinase activity|0004340||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083735.1;locus_tag=LPH39_RS02020;product=glucokinase;protein_id=WP_114867222.1;transl_table=11 NZ_CP087677.1 RefSeq gene 482973 483344 . - . ID=gene-LPH39_RS02025;Name=LPH39_RS02025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02025;old_locus_tag=LPH39_02025 NZ_CP087677.1 Protein Homology CDS 482973 483344 . - 0 ID=cds-WP_230428228.1;Parent=gene-LPH39_RS02025;Dbxref=Genbank:WP_230428228.1;Name=WP_230428228.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607683.1;locus_tag=LPH39_RS02025;product=antibiotic resistance protein VanZ;protein_id=WP_230428228.1;transl_table=11 NZ_CP087677.1 RefSeq gene 483374 484558 . - . ID=gene-LPH39_RS02030;Name=LPH39_RS02030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02030;old_locus_tag=LPH39_02030 NZ_CP087677.1 Protein Homology CDS 483374 484558 . - 0 ID=cds-WP_038272190.1;Parent=gene-LPH39_RS02030;Dbxref=Genbank:WP_038272190.1;Name=WP_038272190.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368204.1;locus_tag=LPH39_RS02030;product=class I SAM-dependent methyltransferase;protein_id=WP_038272190.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 484634 485359 . + . ID=gene-LPH39_RS02035;Name=LPH39_RS02035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS02035;old_locus_tag=LPH39_02035;pseudo=true NZ_CP087677.1 Protein Homology CDS 484634 485359 . + 0 ID=cds-LPH39_RS02035;Parent=gene-LPH39_RS02035;Note=internal stop;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303260.1;locus_tag=LPH39_RS02035;product=pteridine reductase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 485366 485737 . - . ID=gene-LPH39_RS02040;Name=LPH39_RS02040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS02040;old_locus_tag=LPH39_02040;pseudo=true NZ_CP087677.1 Protein Homology CDS 485366 485737 . - 0 ID=cds-LPH39_RS02040;Parent=gene-LPH39_RS02040;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089110.1;locus_tag=LPH39_RS02040;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 485870 487366 . - . ID=gene-LPH39_RS02045;Name=LPH39_RS02045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02045;old_locus_tag=LPH39_02045 NZ_CP087677.1 Protein Homology CDS 485870 487366 . - 0 ID=cds-WP_038272192.1;Parent=gene-LPH39_RS02045;Dbxref=Genbank:WP_038272192.1;Name=WP_038272192.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850924.1;locus_tag=LPH39_RS02045;product=response regulator;protein_id=WP_038272192.1;transl_table=11 NZ_CP087677.1 RefSeq gene 487949 488113 . - . ID=gene-LPH39_RS02050;Name=LPH39_RS02050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02050;old_locus_tag=LPH39_02050 NZ_CP087677.1 GeneMarkS-2+ CDS 487949 488113 . - 0 ID=cds-WP_160165209.1;Parent=gene-LPH39_RS02050;Dbxref=Genbank:WP_160165209.1;Name=WP_160165209.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02050;product=hypothetical protein;protein_id=WP_160165209.1;transl_table=11 NZ_CP087677.1 RefSeq gene 489166 489309 . - . ID=gene-LPH39_RS02055;Name=LPH39_RS02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02055;old_locus_tag=LPH39_02055 NZ_CP087677.1 GeneMarkS-2+ CDS 489166 489309 . - 0 ID=cds-WP_160165210.1;Parent=gene-LPH39_RS02055;Dbxref=Genbank:WP_160165210.1;Name=WP_160165210.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02055;product=hypothetical protein;protein_id=WP_160165210.1;transl_table=11 NZ_CP087677.1 RefSeq gene 489667 490080 . - . ID=gene-LPH39_RS02060;Name=crcB;gbkey=Gene;gene=crcB;gene_biotype=protein_coding;locus_tag=LPH39_RS02060;old_locus_tag=LPH39_02060 NZ_CP087677.1 Protein Homology CDS 489667 490080 . - 0 ID=cds-WP_038272195.1;Parent=gene-LPH39_RS02060;Dbxref=Genbank:WP_038272195.1;Name=WP_038272195.1;gbkey=CDS;gene=crcB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448736.1;locus_tag=LPH39_RS02060;product=fluoride efflux transporter CrcB;protein_id=WP_038272195.1;transl_table=11 NZ_CP087677.1 RefSeq gene 490242 491531 . - . ID=gene-LPH39_RS02065;Name=LPH39_RS02065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02065;old_locus_tag=LPH39_02065 NZ_CP087677.1 Protein Homology CDS 490242 491531 . - 0 ID=cds-WP_201745741.1;Parent=gene-LPH39_RS02065;Dbxref=Genbank:WP_201745741.1;Name=WP_201745741.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507724.1;locus_tag=LPH39_RS02065;product=replication-associated recombination protein A;protein_id=WP_201745741.1;transl_table=11 NZ_CP087677.1 RefSeq gene 491774 492400 . - . ID=gene-LPH39_RS02070;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=LPH39_RS02070;old_locus_tag=LPH39_02070 NZ_CP087677.1 Protein Homology CDS 491774 492400 . - 0 ID=cds-WP_038272259.1;Parent=gene-LPH39_RS02070;Dbxref=Genbank:WP_038272259.1;Name=WP_038272259.1;Ontology_term=GO:0009306,GO:0008320;gbkey=CDS;gene=lolA;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089126.1;locus_tag=LPH39_RS02070;product=outer membrane lipoprotein chaperone LolA;protein_id=WP_038272259.1;transl_table=11 NZ_CP087677.1 RefSeq gene 492463 492705 . - . ID=gene-LPH39_RS02075;Name=LPH39_RS02075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02075;old_locus_tag=LPH39_02075 NZ_CP087677.1 GeneMarkS-2+ CDS 492463 492705 . - 0 ID=cds-WP_038272200.1;Parent=gene-LPH39_RS02075;Dbxref=Genbank:WP_038272200.1;Name=WP_038272200.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02075;product=hypothetical protein;protein_id=WP_038272200.1;transl_table=11 NZ_CP087677.1 RefSeq gene 493722 495596 . - . ID=gene-LPH39_RS02080;Name=LPH39_RS02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02080;old_locus_tag=LPH39_02080 NZ_CP087677.1 Protein Homology CDS 493722 495596 . - 0 ID=cds-WP_230428290.1;Parent=gene-LPH39_RS02080;Dbxref=Genbank:WP_230428290.1;Name=WP_230428290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850921.1;locus_tag=LPH39_RS02080;product=DUF3857 domain-containing transglutaminase family protein;protein_id=WP_230428290.1;transl_table=11 NZ_CP087677.1 RefSeq gene 495790 498144 . - . ID=gene-LPH39_RS02085;Name=LPH39_RS02085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02085;old_locus_tag=LPH39_02085 NZ_CP087677.1 Protein Homology CDS 495790 498144 . - 0 ID=cds-WP_038272204.1;Parent=gene-LPH39_RS02085;Dbxref=Genbank:WP_038272204.1;Name=WP_038272204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083745.1;locus_tag=LPH39_RS02085;product=DNA translocase FtsK;protein_id=WP_038272204.1;transl_table=11 NZ_CP087677.1 RefSeq gene 498417 499382 . + . ID=gene-LPH39_RS02090;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=LPH39_RS02090;old_locus_tag=LPH39_02090 NZ_CP087677.1 Protein Homology CDS 498417 499382 . + 0 ID=cds-WP_038272206.1;Parent=gene-LPH39_RS02090;Dbxref=Genbank:WP_038272206.1;Name=WP_038272206.1;Ontology_term=GO:0004791;gbkey=CDS;gene=trxB;go_function=thioredoxin-disulfide reductase activity|0004791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006366671.1;locus_tag=LPH39_RS02090;product=thioredoxin-disulfide reductase;protein_id=WP_038272206.1;transl_table=11 NZ_CP087677.1 RefSeq gene 499826 500962 . + . ID=gene-LPH39_RS02095;Name=LPH39_RS02095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02095;old_locus_tag=LPH39_02095 NZ_CP087677.1 Protein Homology CDS 499826 500962 . + 0 ID=cds-WP_038272208.1;Parent=gene-LPH39_RS02095;Dbxref=Genbank:WP_038272208.1;Name=WP_038272208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850918.1;locus_tag=LPH39_RS02095;product=GNAT family N-acetyltransferase;protein_id=WP_038272208.1;transl_table=11 NZ_CP087677.1 RefSeq gene 500973 501704 . + . ID=gene-LPH39_RS02100;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=LPH39_RS02100;old_locus_tag=LPH39_02100 NZ_CP087677.1 Protein Homology CDS 500973 501704 . + 0 ID=cds-WP_038272210.1;Parent=gene-LPH39_RS02100;Dbxref=Genbank:WP_038272210.1;Name=WP_038272210.1;Ontology_term=GO:0006508,GO:0008914;gbkey=CDS;gene=aat;go_function=leucyltransferase activity|0008914||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089137.1;locus_tag=LPH39_RS02100;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=WP_038272210.1;transl_table=11 NZ_CP087677.1 RefSeq gene 501821 502039 . + . ID=gene-LPH39_RS02105;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=LPH39_RS02105;old_locus_tag=LPH39_02105 NZ_CP087677.1 Protein Homology CDS 501821 502039 . + 0 ID=cds-WP_038272213.1;Parent=gene-LPH39_RS02105;Dbxref=Genbank:WP_038272213.1;Name=WP_038272213.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002553999.1;locus_tag=LPH39_RS02105;product=translation initiation factor IF-1;protein_id=WP_038272213.1;transl_table=11 NZ_CP087677.1 RefSeq gene 502370 504646 . - . ID=gene-LPH39_RS02110;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=LPH39_RS02110;old_locus_tag=LPH39_02110 NZ_CP087677.1 Protein Homology CDS 502370 504646 . - 0 ID=cds-WP_038272214.1;Parent=gene-LPH39_RS02110;Dbxref=Genbank:WP_038272214.1;Name=WP_038272214.1;Ontology_term=GO:0006508,GO:0043335,GO:0004176,GO:0009368;gbkey=CDS;gene=clpA;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA;go_process=proteolysis|0006508||IEA,protein unfolding|0043335||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901749.1;locus_tag=LPH39_RS02110;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=WP_038272214.1;transl_table=11 NZ_CP087677.1 RefSeq gene 504775 505095 . - . ID=gene-LPH39_RS02115;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=LPH39_RS02115;old_locus_tag=LPH39_02115 NZ_CP087677.1 Protein Homology CDS 504775 505095 . - 0 ID=cds-WP_038272215.1;Parent=gene-LPH39_RS02115;Dbxref=Genbank:WP_038272215.1;Name=WP_038272215.1;gbkey=CDS;gene=clpS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914463.1;locus_tag=LPH39_RS02115;product=ATP-dependent Clp protease adapter ClpS;protein_id=WP_038272215.1;transl_table=11 NZ_CP087677.1 RefSeq gene 505297 505755 . + . ID=gene-LPH39_RS02120;Name=LPH39_RS02120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02120;old_locus_tag=LPH39_02120 NZ_CP087677.1 Protein Homology CDS 505297 505755 . + 0 ID=cds-WP_038272217.1;Parent=gene-LPH39_RS02120;Dbxref=Genbank:WP_038272217.1;Name=WP_038272217.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083752.1;locus_tag=LPH39_RS02120;product=NUDIX hydrolase;protein_id=WP_038272217.1;transl_table=11 NZ_CP087677.1 RefSeq gene 505752 506876 . + . ID=gene-LPH39_RS02125;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;locus_tag=LPH39_RS02125;old_locus_tag=LPH39_02125 NZ_CP087677.1 Protein Homology CDS 505752 506876 . + 0 ID=cds-WP_038272219.1;Parent=gene-LPH39_RS02125;Dbxref=Genbank:WP_038272219.1;Name=WP_038272219.1;Ontology_term=GO:0008033,GO:0016740,GO:0016783;gbkey=CDS;gene=mnmA;go_function=transferase activity|0016740||IEA,sulfurtransferase activity|0016783||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575784.1;locus_tag=LPH39_RS02125;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=WP_038272219.1;transl_table=11 NZ_CP087677.1 RefSeq gene 506889 507503 . + . ID=gene-LPH39_RS02130;Name=hflD;gbkey=Gene;gene=hflD;gene_biotype=protein_coding;locus_tag=LPH39_RS02130;old_locus_tag=LPH39_02130 NZ_CP087677.1 Protein Homology CDS 506889 507503 . + 0 ID=cds-WP_038272221.1;Parent=gene-LPH39_RS02130;Dbxref=Genbank:WP_038272221.1;Name=WP_038272221.1;gbkey=CDS;gene=hflD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893940.1;locus_tag=LPH39_RS02130;product=high frequency lysogenization protein HflD;protein_id=WP_038272221.1;transl_table=11 NZ_CP087677.1 RefSeq gene 508052 508342 . + . ID=gene-LPH39_RS02135;Name=LPH39_RS02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02135;old_locus_tag=LPH39_02135 NZ_CP087677.1 GeneMarkS-2+ CDS 508052 508342 . + 0 ID=cds-WP_038272223.1;Parent=gene-LPH39_RS02135;Dbxref=Genbank:WP_038272223.1;Name=WP_038272223.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02135;product=hypothetical protein;protein_id=WP_038272223.1;transl_table=11 NZ_CP087677.1 RefSeq gene 508966 509733 . - . ID=gene-LPH39_RS02140;Name=LPH39_RS02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02140;old_locus_tag=LPH39_02140 NZ_CP087677.1 Protein Homology CDS 508966 509733 . - 0 ID=cds-WP_038272225.1;Parent=gene-LPH39_RS02140;Dbxref=Genbank:WP_038272225.1;Name=WP_038272225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260285.1;locus_tag=LPH39_RS02140;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_038272225.1;transl_table=11 NZ_CP087677.1 RefSeq gene 509749 510516 . - . ID=gene-LPH39_RS02145;Name=LPH39_RS02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02145;old_locus_tag=LPH39_02145 NZ_CP087677.1 Protein Homology CDS 509749 510516 . - 0 ID=cds-WP_038272261.1;Parent=gene-LPH39_RS02145;Dbxref=Genbank:WP_038272261.1;Name=WP_038272261.1;Ontology_term=GO:0015035;gbkey=CDS;go_function=protein-disulfide reductase activity|0015035||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850913.1;locus_tag=LPH39_RS02145;product=thiol:disulfide interchange protein DsbA/DsbL;protein_id=WP_038272261.1;transl_table=11 NZ_CP087677.1 RefSeq gene 510597 511253 . - . ID=gene-LPH39_RS02150;Name=LPH39_RS02150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02150;old_locus_tag=LPH39_02150 NZ_CP087677.1 Protein Homology CDS 510597 511253 . - 0 ID=cds-WP_038272264.1;Parent=gene-LPH39_RS02150;Dbxref=Genbank:WP_038272264.1;Name=WP_038272264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183737.1;locus_tag=LPH39_RS02150;product=thiol:disulfide interchange protein DsbA/DsbL;protein_id=WP_038272264.1;transl_table=11 NZ_CP087677.1 RefSeq gene 511718 511852 . - . ID=gene-LPH39_RS11965;Name=LPH39_RS11965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11965 NZ_CP087677.1 GeneMarkS-2+ CDS 511718 511852 . - 0 ID=cds-WP_267903156.1;Parent=gene-LPH39_RS11965;Dbxref=Genbank:WP_267903156.1;Name=WP_267903156.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11965;product=hypothetical protein;protein_id=WP_267903156.1;transl_table=11 NZ_CP087677.1 RefSeq gene 512237 512848 . + . ID=gene-LPH39_RS02155;Name=yihA;gbkey=Gene;gene=yihA;gene_biotype=protein_coding;locus_tag=LPH39_RS02155;old_locus_tag=LPH39_02155 NZ_CP087677.1 Protein Homology CDS 512237 512848 . + 0 ID=cds-WP_038272231.1;Parent=gene-LPH39_RS02155;Dbxref=Genbank:WP_038272231.1;Name=WP_038272231.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=yihA;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299877.1;locus_tag=LPH39_RS02155;product=ribosome biogenesis GTP-binding protein YihA/YsxC;protein_id=WP_038272231.1;transl_table=11 NZ_CP087677.1 RefSeq gene 513049 514413 . + . ID=gene-LPH39_RS02160;Name=LPH39_RS02160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02160;old_locus_tag=LPH39_02160 NZ_CP087677.1 Protein Homology CDS 513049 514413 . + 0 ID=cds-WP_038272234.1;Parent=gene-LPH39_RS02160;Dbxref=Genbank:WP_038272234.1;Name=WP_038272234.1;Ontology_term=GO:0006750,GO:0004357;gbkey=CDS;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477658.1;locus_tag=LPH39_RS02160;product=glutamate--cysteine ligase;protein_id=WP_038272234.1;transl_table=11 NZ_CP087677.1 RefSeq gene 514708 514845 . - . ID=gene-LPH39_RS02165;Name=LPH39_RS02165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02165;old_locus_tag=LPH39_02165 NZ_CP087677.1 GeneMarkS-2+ CDS 514708 514845 . - 0 ID=cds-WP_160165211.1;Parent=gene-LPH39_RS02165;Dbxref=Genbank:WP_160165211.1;Name=WP_160165211.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02165;product=hypothetical protein;protein_id=WP_160165211.1;transl_table=11 NZ_CP087677.1 RefSeq gene 514854 516089 . - . ID=gene-LPH39_RS02170;Name=LPH39_RS02170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02170;old_locus_tag=LPH39_02170 NZ_CP087677.1 Protein Homology CDS 514854 516089 . - 0 ID=cds-WP_038272236.1;Parent=gene-LPH39_RS02170;Dbxref=Genbank:WP_038272236.1;Name=WP_038272236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577885.1;locus_tag=LPH39_RS02170;product=acetylornithine transaminase;protein_id=WP_038272236.1;transl_table=11 NZ_CP087677.1 RefSeq gene 516157 517053 . + . ID=gene-LPH39_RS02175;Name=LPH39_RS02175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02175;old_locus_tag=LPH39_02175 NZ_CP087677.1 Protein Homology CDS 516157 517053 . + 0 ID=cds-WP_038272238.1;Parent=gene-LPH39_RS02175;Dbxref=Genbank:WP_038272238.1;Name=WP_038272238.1;Ontology_term=GO:0006811,GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=ion transport|0006811||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083762.1;locus_tag=LPH39_RS02175;product=ion transporter;protein_id=WP_038272238.1;transl_table=11 NZ_CP087677.1 RefSeq gene 517314 518288 . + . ID=gene-LPH39_RS02180;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=LPH39_RS02180;old_locus_tag=LPH39_02180 NZ_CP087677.1 Protein Homology CDS 517314 518288 . + 0 ID=cds-WP_038272241.1;Parent=gene-LPH39_RS02180;Dbxref=Genbank:WP_038272241.1;Name=WP_038272241.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerD;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932805.1;locus_tag=LPH39_RS02180;product=site-specific tyrosine recombinase XerD;protein_id=WP_038272241.1;transl_table=11 NZ_CP087677.1 RefSeq gene 518420 519208 . + . ID=gene-LPH39_RS02185;Name=LPH39_RS02185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02185;old_locus_tag=LPH39_02185 NZ_CP087677.1 Protein Homology CDS 518420 519208 . + 0 ID=cds-WP_038272243.1;Parent=gene-LPH39_RS02185;Dbxref=Genbank:WP_038272243.1;Name=WP_038272243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850905.1;locus_tag=LPH39_RS02185;product=DsbC family protein;protein_id=WP_038272243.1;transl_table=11 NZ_CP087677.1 RefSeq gene 519405 523379 . + . ID=gene-LPH39_RS02190;Name=purL;gbkey=Gene;gene=purL;gene_biotype=protein_coding;locus_tag=LPH39_RS02190;old_locus_tag=LPH39_02190 NZ_CP087677.1 Protein Homology CDS 519405 523379 . + 0 ID=cds-WP_038272267.1;Parent=gene-LPH39_RS02190;Dbxref=Genbank:WP_038272267.1;Name=WP_038272267.1;Ontology_term=GO:0006189,GO:0004642;gbkey=CDS;gene=purL;go_function=phosphoribosylformylglycinamidine synthase activity|0004642||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367790.1;locus_tag=LPH39_RS02190;product=phosphoribosylformylglycinamidine synthase;protein_id=WP_038272267.1;transl_table=11 NZ_CP087677.1 RefSeq gene 524282 524590 . - . ID=gene-LPH39_RS02195;Name=LPH39_RS02195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02195;old_locus_tag=LPH39_02195 NZ_CP087677.1 Protein Homology CDS 524282 524590 . - 0 ID=cds-WP_038272244.1;Parent=gene-LPH39_RS02195;Dbxref=Genbank:WP_038272244.1;Name=WP_038272244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097729.1;locus_tag=LPH39_RS02195;product=hypothetical protein;protein_id=WP_038272244.1;transl_table=11 NZ_CP087677.1 RefSeq gene 524587 525864 . - . ID=gene-LPH39_RS02200;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=LPH39_RS02200;old_locus_tag=LPH39_02200 NZ_CP087677.1 Protein Homology CDS 524587 525864 . - 0 ID=cds-WP_038272246.1;Parent=gene-LPH39_RS02200;Dbxref=Genbank:WP_038272246.1;Name=WP_038272246.1;Ontology_term=GO:0009252,GO:0008760;gbkey=CDS;gene=murA;go_function=UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity|0008760||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437778.1;locus_tag=LPH39_RS02200;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_038272246.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 525922 526186 . - . ID=gene-LPH39_RS02205;Name=LPH39_RS02205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS02205;old_locus_tag=LPH39_02205;pseudo=true NZ_CP087677.1 Protein Homology CDS 525922 526186 . - 0 ID=cds-LPH39_RS02205;Parent=gene-LPH39_RS02205;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407890.1;locus_tag=LPH39_RS02205;product=BolA/IbaG family iron-sulfur metabolism protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 526211 527212 . + . ID=gene-LPH39_RS02210;Name=LPH39_RS02210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02210;old_locus_tag=LPH39_02210 NZ_CP087677.1 Protein Homology CDS 526211 527212 . + 0 ID=cds-WP_038272251.1;Parent=gene-LPH39_RS02210;Dbxref=Genbank:WP_038272251.1;Name=WP_038272251.1;Ontology_term=GO:0005975,GO:0016853;gbkey=CDS;go_function=isomerase activity|0016853||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993233.1;locus_tag=LPH39_RS02210;product=KpsF/GutQ family sugar-phosphate isomerase;protein_id=WP_038272251.1;transl_table=11 NZ_CP087677.1 RefSeq gene 527232 527780 . + . ID=gene-LPH39_RS02215;Name=LPH39_RS02215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02215;old_locus_tag=LPH39_02215 NZ_CP087677.1 Protein Homology CDS 527232 527780 . + 0 ID=cds-WP_038272254.1;Parent=gene-LPH39_RS02215;Dbxref=Genbank:WP_038272254.1;Name=WP_038272254.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508473.1;locus_tag=LPH39_RS02215;product=HAD family hydrolase;protein_id=WP_038272254.1;transl_table=11 NZ_CP087677.1 RefSeq gene 527777 528346 . + . ID=gene-LPH39_RS02220;Name=lptC;gbkey=Gene;gene=lptC;gene_biotype=protein_coding;locus_tag=LPH39_RS02220;old_locus_tag=LPH39_02220 NZ_CP087677.1 Protein Homology CDS 527777 528346 . + 0 ID=cds-WP_114867169.1;Parent=gene-LPH39_RS02220;Dbxref=Genbank:WP_114867169.1;Name=WP_114867169.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptC;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850898.1;locus_tag=LPH39_RS02220;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_114867169.1;transl_table=11 NZ_CP087677.1 RefSeq gene 528417 528857 . + . ID=gene-LPH39_RS02225;Name=lptA;gbkey=Gene;gene=lptA;gene_biotype=protein_coding;locus_tag=LPH39_RS02225;old_locus_tag=LPH39_02225 NZ_CP087677.1 Protein Homology CDS 528417 528857 . + 0 ID=cds-WP_230428291.1;Parent=gene-LPH39_RS02225;Dbxref=Genbank:WP_230428291.1;Name=WP_230428291.1;Ontology_term=GO:0015920,GO:0001530,GO:0030288,GO:0043190;gbkey=CDS;gene=lptA;go_component=outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide binding|0001530||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893912.1;locus_tag=LPH39_RS02225;product=lipopolysaccharide transport periplasmic protein LptA;protein_id=WP_230428291.1;transl_table=11 NZ_CP087677.1 RefSeq gene 528857 529579 . + . ID=gene-LPH39_RS02230;Name=lptB;gbkey=Gene;gene=lptB;gene_biotype=protein_coding;locus_tag=LPH39_RS02230;old_locus_tag=LPH39_02230 NZ_CP087677.1 Protein Homology CDS 528857 529579 . + 0 ID=cds-WP_038271459.1;Parent=gene-LPH39_RS02230;Dbxref=Genbank:WP_038271459.1;Name=WP_038271459.1;Ontology_term=GO:0015920,GO:0015221,GO:0042626,GO:0009898,GO:0043190;gbkey=CDS;gene=lptB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913374.1;locus_tag=LPH39_RS02230;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_038271459.1;transl_table=11 NZ_CP087677.1 RefSeq gene 529626 531002 . + . ID=gene-LPH39_RS02235;Name=LPH39_RS02235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02235;old_locus_tag=LPH39_02235 NZ_CP087677.1 Protein Homology CDS 529626 531002 . + 0 ID=cds-WP_038271528.1;Parent=gene-LPH39_RS02235;Dbxref=Genbank:WP_038271528.1;Name=WP_038271528.1;Ontology_term=GO:0006352,GO:0001216,GO:0003677,GO:0016987;gbkey=CDS;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019185406.1;locus_tag=LPH39_RS02235;product=RNA polymerase factor sigma-54;protein_id=WP_038271528.1;transl_table=11 NZ_CP087677.1 RefSeq gene 531108 531425 . + . ID=gene-LPH39_RS02240;Name=raiA;gbkey=Gene;gene=raiA;gene_biotype=protein_coding;locus_tag=LPH39_RS02240;old_locus_tag=LPH39_02240 NZ_CP087677.1 Protein Homology CDS 531108 531425 . + 0 ID=cds-WP_038271460.1;Parent=gene-LPH39_RS02240;Dbxref=Genbank:WP_038271460.1;Name=WP_038271460.1;Ontology_term=GO:0009386,GO:0045182,GO:0005840,GO:0022626;gbkey=CDS;gene=raiA;go_component=ribosome|0005840||IEA,cytosolic ribosome|0022626||IEA;go_function=translation regulator activity|0045182||IEA;go_process=translational attenuation|0009386||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083778.1;locus_tag=LPH39_RS02240;product=ribosome-associated translation inhibitor RaiA;protein_id=WP_038271460.1;transl_table=11 NZ_CP087677.1 RefSeq gene 531728 532678 . + . ID=gene-LPH39_RS02245;Name=hprK;gbkey=Gene;gene=hprK;gene_biotype=protein_coding;locus_tag=LPH39_RS02245;old_locus_tag=LPH39_02245 NZ_CP087677.1 Protein Homology CDS 531728 532678 . + 0 ID=cds-WP_114867170.1;Parent=gene-LPH39_RS02245;Dbxref=Genbank:WP_114867170.1;Name=WP_114867170.1;Ontology_term=GO:0009401,GO:0004674,GO:0016791;gbkey=CDS;gene=hprK;go_function=protein serine/threonine kinase activity|0004674||IEA,phosphatase activity|0016791||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004425835.1;locus_tag=LPH39_RS02245;product=HPr(Ser) kinase/phosphatase;protein_id=WP_114867170.1;transl_table=11 NZ_CP087677.1 RefSeq gene 532675 533547 . + . ID=gene-LPH39_RS02250;Name=rapZ;gbkey=Gene;gene=rapZ;gene_biotype=protein_coding;locus_tag=LPH39_RS02250;old_locus_tag=LPH39_02250 NZ_CP087677.1 Protein Homology CDS 532675 533547 . + 0 ID=cds-WP_038271462.1;Parent=gene-LPH39_RS02250;Dbxref=Genbank:WP_038271462.1;Name=WP_038271462.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rapZ;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850895.1;locus_tag=LPH39_RS02250;product=RNase adapter RapZ;protein_id=WP_038271462.1;transl_table=11 NZ_CP087677.1 RefSeq gene 534533 534925 . + . ID=gene-LPH39_RS02255;Name=LPH39_RS02255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02255;old_locus_tag=LPH39_02255 NZ_CP087677.1 Protein Homology CDS 534533 534925 . + 0 ID=cds-WP_038271463.1;Parent=gene-LPH39_RS02255;Dbxref=Genbank:WP_038271463.1;Name=WP_038271463.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154797.1;locus_tag=LPH39_RS02255;product=PTS fructose IIA component family protein;protein_id=WP_038271463.1;transl_table=11 NZ_CP087677.1 RefSeq gene 534918 535187 . + . ID=gene-LPH39_RS02260;Name=LPH39_RS02260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02260;old_locus_tag=LPH39_02260 NZ_CP087677.1 Protein Homology CDS 534918 535187 . + 0 ID=cds-WP_038271464.1;Parent=gene-LPH39_RS02260;Dbxref=Genbank:WP_038271464.1;Name=WP_038271464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237443.1;locus_tag=LPH39_RS02260;product=HPr family phosphocarrier protein;protein_id=WP_038271464.1;transl_table=11 NZ_CP087677.1 RefSeq gene 535228 536955 . + . ID=gene-LPH39_RS02265;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=LPH39_RS02265;old_locus_tag=LPH39_02265 NZ_CP087677.1 Protein Homology CDS 535228 536955 . + 0 ID=cds-WP_038271465.1;Parent=gene-LPH39_RS02265;Dbxref=Genbank:WP_038271465.1;Name=WP_038271465.1;Ontology_term=GO:0006808,GO:0009401,GO:0008965;gbkey=CDS;gene=ptsP;go_function=phosphoenolpyruvate-protein phosphotransferase activity|0008965||IEA;go_process=regulation of nitrogen utilization|0006808||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097727.1;locus_tag=LPH39_RS02265;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_038271465.1;transl_table=11 NZ_CP087677.1 RefSeq gene 537066 538427 . + . ID=gene-LPH39_RS02270;Name=mgtE;gbkey=Gene;gene=mgtE;gene_biotype=protein_coding;locus_tag=LPH39_RS02270;old_locus_tag=LPH39_02270 NZ_CP087677.1 Protein Homology CDS 537066 538427 . + 0 ID=cds-WP_038271466.1;Parent=gene-LPH39_RS02270;Dbxref=Genbank:WP_038271466.1;Name=WP_038271466.1;Ontology_term=GO:0015693,GO:0015095;gbkey=CDS;gene=mgtE;go_function=magnesium ion transmembrane transporter activity|0015095||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008266103.1;locus_tag=LPH39_RS02270;product=magnesium transporter;protein_id=WP_038271466.1;transl_table=11 NZ_CP087677.1 RefSeq gene 538932 539459 . + . ID=gene-LPH39_RS02275;Name=gloA;gbkey=Gene;gene=gloA;gene_biotype=protein_coding;locus_tag=LPH39_RS02275;old_locus_tag=LPH39_02275 NZ_CP087677.1 Protein Homology CDS 538932 539459 . + 0 ID=cds-WP_051482336.1;Parent=gene-LPH39_RS02275;Dbxref=Genbank:WP_051482336.1;Name=WP_051482336.1;Ontology_term=GO:0005975,GO:0051596,GO:0004462;gbkey=CDS;gene=gloA;go_function=lactoylglutathione lyase activity|0004462||IEA;go_process=carbohydrate metabolic process|0005975||IEA,methylglyoxal catabolic process|0051596||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089226.1;locus_tag=LPH39_RS02275;product=lactoylglutathione lyase;protein_id=WP_051482336.1;transl_table=11 NZ_CP087677.1 RefSeq gene 540142 541332 . - . ID=gene-LPH39_RS02280;Name=LPH39_RS02280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02280;old_locus_tag=LPH39_02280 NZ_CP087677.1 Protein Homology CDS 540142 541332 . - 0 ID=cds-WP_051482339.1;Parent=gene-LPH39_RS02280;Dbxref=Genbank:WP_051482339.1;Name=WP_051482339.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089227.1;locus_tag=LPH39_RS02280;product=cation:proton antiporter;protein_id=WP_051482339.1;transl_table=11 NZ_CP087677.1 RefSeq gene 542557 543468 . - . ID=gene-LPH39_RS02285;Name=LPH39_RS02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02285;old_locus_tag=LPH39_02285 NZ_CP087677.1 Protein Homology CDS 542557 543468 . - 0 ID=cds-WP_038271469.1;Parent=gene-LPH39_RS02285;Dbxref=Genbank:WP_038271469.1;Name=WP_038271469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850889.1;locus_tag=LPH39_RS02285;product=class I SAM-dependent methyltransferase;protein_id=WP_038271469.1;transl_table=11 NZ_CP087677.1 RefSeq gene 543784 544014 . + . ID=gene-LPH39_RS02290;Name=LPH39_RS02290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02290;old_locus_tag=LPH39_02290 NZ_CP087677.1 Protein Homology CDS 543784 544014 . + 0 ID=cds-WP_230428292.1;Parent=gene-LPH39_RS02290;Dbxref=Genbank:WP_230428292.1;Name=WP_230428292.1;Ontology_term=GO:0009372,GO:0017148,GO:0044010;gbkey=CDS;go_process=quorum sensing|0009372||IEA,negative regulation of translation|0017148||IEA,single-species biofilm formation|0044010||IEA;inference=COORDINATES: protein motif:HMM:NF027059.2;locus_tag=LPH39_RS02290;product=type II toxin-antitoxin system MqsR family toxin;protein_id=WP_230428292.1;transl_table=11 NZ_CP087677.1 RefSeq gene 544494 544724 . - . ID=gene-LPH39_RS02295;Name=LPH39_RS02295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02295;old_locus_tag=LPH39_02295 NZ_CP087677.1 GeneMarkS-2+ CDS 544494 544724 . - 0 ID=cds-WP_038271470.1;Parent=gene-LPH39_RS02295;Dbxref=Genbank:WP_038271470.1;Name=WP_038271470.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02295;product=hypothetical protein;protein_id=WP_038271470.1;transl_table=11 NZ_CP087677.1 RefSeq gene 545657 545827 . + . ID=gene-LPH39_RS02300;Name=LPH39_RS02300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02300;old_locus_tag=LPH39_02300 NZ_CP087677.1 GeneMarkS-2+ CDS 545657 545827 . + 0 ID=cds-WP_160165189.1;Parent=gene-LPH39_RS02300;Dbxref=Genbank:WP_160165189.1;Name=WP_160165189.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02300;product=hypothetical protein;protein_id=WP_160165189.1;transl_table=11 NZ_CP087677.1 RefSeq gene 546127 546363 . + . ID=gene-LPH39_RS02305;Name=LPH39_RS02305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02305;old_locus_tag=LPH39_02305 NZ_CP087677.1 GeneMarkS-2+ CDS 546127 546363 . + 0 ID=cds-WP_038271471.1;Parent=gene-LPH39_RS02305;Dbxref=Genbank:WP_038271471.1;Name=WP_038271471.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02305;product=hypothetical protein;protein_id=WP_038271471.1;transl_table=11 NZ_CP087677.1 RefSeq gene 547112 547819 . + . ID=gene-LPH39_RS02310;Name=LPH39_RS02310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02310;old_locus_tag=LPH39_02310 NZ_CP087677.1 GeneMarkS-2+ CDS 547112 547819 . + 0 ID=cds-WP_152536627.1;Parent=gene-LPH39_RS02310;Dbxref=Genbank:WP_152536627.1;Name=WP_152536627.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02310;product=hypothetical protein;protein_id=WP_152536627.1;transl_table=11 NZ_CP087677.1 RefSeq gene 547886 548467 . + . ID=gene-LPH39_RS02315;Name=LPH39_RS02315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02315;old_locus_tag=LPH39_02315 NZ_CP087677.1 Protein Homology CDS 547886 548467 . + 0 ID=cds-WP_038271473.1;Parent=gene-LPH39_RS02315;Dbxref=Genbank:WP_038271473.1;Name=WP_038271473.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019464587.1;locus_tag=LPH39_RS02315;product=sigma-70 family RNA polymerase sigma factor;protein_id=WP_038271473.1;transl_table=11 NZ_CP087677.1 RefSeq gene 548464 549117 . + . ID=gene-LPH39_RS02320;Name=LPH39_RS02320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02320;old_locus_tag=LPH39_02320 NZ_CP087677.1 Protein Homology CDS 548464 549117 . + 0 ID=cds-WP_038271474.1;Parent=gene-LPH39_RS02320;Dbxref=Genbank:WP_038271474.1;Name=WP_038271474.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169443.1;locus_tag=LPH39_RS02320;product=hypothetical protein;protein_id=WP_038271474.1;transl_table=11 NZ_CP087677.1 RefSeq gene 549177 550457 . + . ID=gene-LPH39_RS02325;Name=LPH39_RS02325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02325;old_locus_tag=LPH39_02325 NZ_CP087677.1 Protein Homology CDS 549177 550457 . + 0 ID=cds-WP_230428293.1;Parent=gene-LPH39_RS02325;Dbxref=Genbank:WP_230428293.1;Name=WP_230428293.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438591.1;locus_tag=LPH39_RS02325;product=S8 family serine peptidase;protein_id=WP_230428293.1;transl_table=11 NZ_CP087677.1 RefSeq gene 551156 551638 . - . ID=gene-LPH39_RS02330;Name=LPH39_RS02330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02330;old_locus_tag=LPH39_02330 NZ_CP087677.1 Protein Homology CDS 551156 551638 . - 0 ID=cds-WP_038271482.1;Parent=gene-LPH39_RS02330;Dbxref=Genbank:WP_038271482.1;Name=WP_038271482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157214.1;locus_tag=LPH39_RS02330;product=single-stranded DNA-binding protein;protein_id=WP_038271482.1;transl_table=11 NZ_CP087677.1 RefSeq gene 551885 552883 . + . ID=gene-LPH39_RS02335;Name=LPH39_RS02335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02335;old_locus_tag=LPH39_02335 NZ_CP087677.1 Protein Homology CDS 551885 552883 . + 0 ID=cds-WP_038271484.1;Parent=gene-LPH39_RS02335;Dbxref=Genbank:WP_038271484.1;Name=WP_038271484.1;Ontology_term=GO:0008299;gbkey=CDS;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966188.1;locus_tag=LPH39_RS02335;product=polyprenyl synthetase family protein;protein_id=WP_038271484.1;transl_table=11 NZ_CP087677.1 RefSeq gene 553777 554721 . + . ID=gene-LPH39_RS02340;Name=cyoA;gbkey=Gene;gene=cyoA;gene_biotype=protein_coding;locus_tag=LPH39_RS02340;old_locus_tag=LPH39_02340 NZ_CP087677.1 Protein Homology CDS 553777 554721 . + 0 ID=cds-WP_038271486.1;Parent=gene-LPH39_RS02340;Dbxref=Genbank:WP_038271486.1;Name=WP_038271486.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoA;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300511.1;locus_tag=LPH39_RS02340;product=ubiquinol oxidase subunit II;protein_id=WP_038271486.1;transl_table=11 NZ_CP087677.1 RefSeq gene 554721 556718 . + . ID=gene-LPH39_RS02345;Name=cyoB;gbkey=Gene;gene=cyoB;gene_biotype=protein_coding;locus_tag=LPH39_RS02345;old_locus_tag=LPH39_02345 NZ_CP087677.1 Protein Homology CDS 554721 556718 . + 0 ID=cds-WP_038271488.1;Parent=gene-LPH39_RS02345;Dbxref=Genbank:WP_038271488.1;Name=WP_038271488.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoB;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472398.1;locus_tag=LPH39_RS02345;product=cytochrome o ubiquinol oxidase subunit I;protein_id=WP_038271488.1;transl_table=11 NZ_CP087677.1 RefSeq gene 556715 557350 . + . ID=gene-LPH39_RS02350;Name=cyoC;gbkey=Gene;gene=cyoC;gene_biotype=protein_coding;locus_tag=LPH39_RS02350;old_locus_tag=LPH39_02350 NZ_CP087677.1 Protein Homology CDS 556715 557350 . + 0 ID=cds-WP_171898089.1;Parent=gene-LPH39_RS02350;Dbxref=Genbank:WP_171898089.1;Name=WP_171898089.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoC;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851535.1;locus_tag=LPH39_RS02350;product=cytochrome o ubiquinol oxidase subunit III;protein_id=WP_171898089.1;transl_table=11 NZ_CP087677.1 RefSeq gene 557350 557691 . + . ID=gene-LPH39_RS02355;Name=cyoD;gbkey=Gene;gene=cyoD;gene_biotype=protein_coding;locus_tag=LPH39_RS02355;old_locus_tag=LPH39_02355 NZ_CP087677.1 Protein Homology CDS 557350 557691 . + 0 ID=cds-WP_038271490.1;Parent=gene-LPH39_RS02355;Dbxref=Genbank:WP_038271490.1;Name=WP_038271490.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoD;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156584.1;locus_tag=LPH39_RS02355;product=cytochrome o ubiquinol oxidase subunit IV;protein_id=WP_038271490.1;transl_table=11 NZ_CP087677.1 RefSeq gene 558708 561629 . - . ID=gene-LPH39_RS02360;Name=gcvP;gbkey=Gene;gene=gcvP;gene_biotype=protein_coding;locus_tag=LPH39_RS02360;old_locus_tag=LPH39_02360 NZ_CP087677.1 Protein Homology CDS 558708 561629 . - 0 ID=cds-WP_038271491.1;Parent=gene-LPH39_RS02360;Dbxref=Genbank:WP_038271491.1;Name=WP_038271491.1;Ontology_term=GO:0019464,GO:0004375;gbkey=CDS;gene=gcvP;go_function=glycine dehydrogenase (decarboxylating) activity|0004375||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994594.1;locus_tag=LPH39_RS02360;product=aminomethyl-transferring glycine dehydrogenase;protein_id=WP_038271491.1;transl_table=11 NZ_CP087677.1 RefSeq gene 562155 563642 . + . ID=gene-LPH39_RS02365;Name=LPH39_RS02365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02365;old_locus_tag=LPH39_02365 NZ_CP087677.1 Protein Homology CDS 562155 563642 . + 0 ID=cds-WP_230428229.1;Parent=gene-LPH39_RS02365;Dbxref=Genbank:WP_230428229.1;Name=WP_230428229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913680.1;locus_tag=LPH39_RS02365;product=PhoPQ-activated pathogenicity-related family protein;protein_id=WP_230428229.1;transl_table=11 NZ_CP087677.1 RefSeq gene 563639 568063 . - . ID=gene-LPH39_RS02370;Name=LPH39_RS02370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02370;old_locus_tag=LPH39_02370 NZ_CP087677.1 Protein Homology CDS 563639 568063 . - 0 ID=cds-WP_038271493.1;Parent=gene-LPH39_RS02370;Dbxref=Genbank:WP_038271493.1;Name=WP_038271493.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090678.1;locus_tag=LPH39_RS02370;product=DUF3418 domain-containing protein;protein_id=WP_038271493.1;transl_table=11 NZ_CP087677.1 RefSeq gene 568147 568689 . + . ID=gene-LPH39_RS02375;Name=LPH39_RS02375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02375;old_locus_tag=LPH39_02375 NZ_CP087677.1 Protein Homology CDS 568147 568689 . + 0 ID=cds-WP_038271495.1;Parent=gene-LPH39_RS02375;Dbxref=Genbank:WP_038271495.1;Name=WP_038271495.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364158.1;locus_tag=LPH39_RS02375;product=DNA starvation/stationary phase protection protein;protein_id=WP_038271495.1;transl_table=11 NZ_CP087677.1 RefSeq gene 568894 570690 . + . ID=gene-LPH39_RS02380;Name=recQ;gbkey=Gene;gene=recQ;gene_biotype=protein_coding;locus_tag=LPH39_RS02380;old_locus_tag=LPH39_02380 NZ_CP087677.1 Protein Homology CDS 568894 570690 . + 0 ID=cds-WP_038271497.1;Parent=gene-LPH39_RS02380;Dbxref=Genbank:WP_038271497.1;Name=WP_038271497.1;Ontology_term=GO:0006310,GO:0003678;gbkey=CDS;gene=recQ;go_function=DNA helicase activity|0003678||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155540.1;locus_tag=LPH39_RS02380;product=DNA helicase RecQ;protein_id=WP_038271497.1;transl_table=11 NZ_CP087677.1 RefSeq gene 570816 571283 . + . ID=gene-LPH39_RS02385;Name=LPH39_RS02385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02385;old_locus_tag=LPH39_02385 NZ_CP087677.1 Protein Homology CDS 570816 571283 . + 0 ID=cds-WP_038271498.1;Parent=gene-LPH39_RS02385;Dbxref=Genbank:WP_038271498.1;Name=WP_038271498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852759.1;locus_tag=LPH39_RS02385;product=hypothetical protein;protein_id=WP_038271498.1;transl_table=11 NZ_CP087677.1 RefSeq gene 571447 571806 . - . ID=gene-LPH39_RS02390;Name=LPH39_RS02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02390;old_locus_tag=LPH39_02390 NZ_CP087677.1 GeneMarkS-2+ CDS 571447 571806 . - 0 ID=cds-WP_152536628.1;Parent=gene-LPH39_RS02390;Dbxref=Genbank:WP_152536628.1;Name=WP_152536628.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02390;product=hypothetical protein;protein_id=WP_152536628.1;transl_table=11 NZ_CP087677.1 RefSeq gene 571805 571969 . + . ID=gene-LPH39_RS02395;Name=LPH39_RS02395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02395;old_locus_tag=LPH39_02395 NZ_CP087677.1 GeneMarkS-2+ CDS 571805 571969 . + 0 ID=cds-WP_160199308.1;Parent=gene-LPH39_RS02395;Dbxref=Genbank:WP_160199308.1;Name=WP_160199308.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02395;product=hypothetical protein;protein_id=WP_160199308.1;transl_table=11 NZ_CP087677.1 RefSeq gene 571999 572964 . - . ID=gene-LPH39_RS02400;Name=LPH39_RS02400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02400;old_locus_tag=LPH39_02400 NZ_CP087677.1 Protein Homology CDS 571999 572964 . - 0 ID=cds-WP_038271502.1;Parent=gene-LPH39_RS02400;Dbxref=Genbank:WP_038271502.1;Name=WP_038271502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337749.1;locus_tag=LPH39_RS02400;product=LLM class flavin-dependent oxidoreductase;protein_id=WP_038271502.1;transl_table=11 NZ_CP087677.1 RefSeq gene 573154 574548 . + . ID=gene-LPH39_RS02405;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=LPH39_RS02405;old_locus_tag=LPH39_02405 NZ_CP087677.1 Protein Homology CDS 573154 574548 . + 0 ID=cds-WP_038271504.1;Parent=gene-LPH39_RS02405;Dbxref=Genbank:WP_038271504.1;Name=WP_038271504.1;Ontology_term=GO:0006281,GO:0005524;gbkey=CDS;gene=radA;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002807912.1;locus_tag=LPH39_RS02405;product=DNA repair protein RadA;protein_id=WP_038271504.1;transl_table=11 NZ_CP087677.1 RefSeq gene 574876 575277 . - . ID=gene-LPH39_RS02410;Name=LPH39_RS02410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02410;old_locus_tag=LPH39_02410 NZ_CP087677.1 GeneMarkS-2+ CDS 574876 575277 . - 0 ID=cds-WP_038271505.1;Parent=gene-LPH39_RS02410;Dbxref=Genbank:WP_038271505.1;Name=WP_038271505.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02410;product=hypothetical protein;protein_id=WP_038271505.1;transl_table=11 NZ_CP087677.1 RefSeq gene 576022 576828 . - . ID=gene-LPH39_RS02415;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;locus_tag=LPH39_RS02415;old_locus_tag=LPH39_02415 NZ_CP087677.1 Protein Homology CDS 576022 576828 . - 0 ID=cds-WP_038271506.1;Parent=gene-LPH39_RS02415;Dbxref=Genbank:WP_038271506.1;Name=WP_038271506.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpA;go_function=tryptophan synthase activity|0004834||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090667.1;locus_tag=LPH39_RS02415;product=tryptophan synthase subunit alpha;protein_id=WP_038271506.1;transl_table=11 NZ_CP087677.1 RefSeq gene 576957 578171 . - . ID=gene-LPH39_RS02420;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;locus_tag=LPH39_RS02420;old_locus_tag=LPH39_02420 NZ_CP087677.1 Protein Homology CDS 576957 578171 . - 0 ID=cds-WP_038271531.1;Parent=gene-LPH39_RS02420;Dbxref=Genbank:WP_038271531.1;Name=WP_038271531.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpB;go_function=tryptophan synthase activity|0004834||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893879.1;locus_tag=LPH39_RS02420;product=tryptophan synthase subunit beta;protein_id=WP_038271531.1;transl_table=11 NZ_CP087677.1 RefSeq gene 578612 579274 . - . ID=gene-LPH39_RS02425;Name=LPH39_RS02425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02425;old_locus_tag=LPH39_02425 NZ_CP087677.1 Protein Homology CDS 578612 579274 . - 0 ID=cds-WP_038271508.1;Parent=gene-LPH39_RS02425;Dbxref=Genbank:WP_038271508.1;Name=WP_038271508.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006381350.1;locus_tag=LPH39_RS02425;product=phosphoribosylanthranilate isomerase;protein_id=WP_038271508.1;transl_table=11 NZ_CP087677.1 RefSeq gene 579271 580041 . - . ID=gene-LPH39_RS02430;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;locus_tag=LPH39_RS02430;old_locus_tag=LPH39_02430 NZ_CP087677.1 Protein Homology CDS 579271 580041 . - 0 ID=cds-WP_038271509.1;Parent=gene-LPH39_RS02430;Dbxref=Genbank:WP_038271509.1;Name=WP_038271509.1;Ontology_term=GO:0006400,GO:0009982;gbkey=CDS;gene=truA;go_function=pseudouridine synthase activity|0009982||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005417971.1;locus_tag=LPH39_RS02430;product=tRNA pseudouridine(38-40) synthase TruA;protein_id=WP_038271509.1;transl_table=11 NZ_CP087677.1 RefSeq gene 580086 581858 . - . ID=gene-LPH39_RS02435;Name=LPH39_RS02435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02435;old_locus_tag=LPH39_02435 NZ_CP087677.1 Protein Homology CDS 580086 581858 . - 0 ID=cds-WP_038271510.1;Parent=gene-LPH39_RS02435;Dbxref=Genbank:WP_038271510.1;Name=WP_038271510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083830.1;locus_tag=LPH39_RS02435;product=FimV family protein;protein_id=WP_038271510.1;transl_table=11 NZ_CP087677.1 RefSeq gene 582016 583050 . - . ID=gene-LPH39_RS02440;Name=LPH39_RS02440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02440;old_locus_tag=LPH39_02440 NZ_CP087677.1 Protein Homology CDS 582016 583050 . - 0 ID=cds-WP_038271511.1;Parent=gene-LPH39_RS02440;Dbxref=Genbank:WP_038271511.1;Name=WP_038271511.1;Ontology_term=GO:0008652,GO:0004073,GO:0016620,GO:0051287;gbkey=CDS;go_function=aspartate-semialdehyde dehydrogenase activity|0004073||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,NAD binding|0051287||IEA;go_process=amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851986.1;locus_tag=LPH39_RS02440;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_038271511.1;transl_table=11 NZ_CP087677.1 RefSeq gene 583418 583717 . - . ID=gene-LPH39_RS02445;Name=LPH39_RS02445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02445;old_locus_tag=LPH39_02445 NZ_CP087677.1 GeneMarkS-2+ CDS 583418 583717 . - 0 ID=cds-WP_038271512.1;Parent=gene-LPH39_RS02445;Dbxref=Genbank:WP_038271512.1;Name=WP_038271512.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02445;product=hypothetical protein;protein_id=WP_038271512.1;transl_table=11 NZ_CP087677.1 RefSeq gene 583710 584828 . - . ID=gene-LPH39_RS02450;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=LPH39_RS02450;old_locus_tag=LPH39_02450 NZ_CP087677.1 Protein Homology CDS 583710 584828 . - 0 ID=cds-WP_038271513.1;Parent=gene-LPH39_RS02450;Dbxref=Genbank:WP_038271513.1;Name=WP_038271513.1;Ontology_term=GO:0009073,GO:0004107;gbkey=CDS;gene=aroC;go_function=chorismate synthase activity|0004107||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851985.1;locus_tag=LPH39_RS02450;product=chorismate synthase;protein_id=WP_038271513.1;transl_table=11 NZ_CP087677.1 RefSeq gene 584841 585767 . - . ID=gene-LPH39_RS02455;Name=prmB;gbkey=Gene;gene=prmB;gene_biotype=protein_coding;locus_tag=LPH39_RS02455;old_locus_tag=LPH39_02455 NZ_CP087677.1 Protein Homology CDS 584841 585767 . - 0 ID=cds-WP_038271514.1;Parent=gene-LPH39_RS02455;Dbxref=Genbank:WP_038271514.1;Name=WP_038271514.1;Ontology_term=GO:0018364,GO:0042273,GO:0008276,GO:0008757;gbkey=CDS;gene=prmB;go_function=protein methyltransferase activity|0008276||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=peptidyl-glutamine methylation|0018364||IEA,ribosomal large subunit biogenesis|0042273||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927455.1;locus_tag=LPH39_RS02455;product=50S ribosomal protein L3 N(5)-glutamine methyltransferase;protein_id=WP_038271514.1;transl_table=11 NZ_CP087677.1 RefSeq gene 585837 586214 . + . ID=gene-LPH39_RS02460;Name=LPH39_RS02460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02460;old_locus_tag=LPH39_02460 NZ_CP087677.1 Protein Homology CDS 585837 586214 . + 0 ID=cds-WP_038271515.1;Parent=gene-LPH39_RS02460;Dbxref=Genbank:WP_038271515.1;Name=WP_038271515.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014667.2;locus_tag=LPH39_RS02460;product=SCO family protein;protein_id=WP_038271515.1;transl_table=11 NZ_CP087677.1 RefSeq gene 586343 588931 . - . ID=gene-LPH39_RS02465;Name=LPH39_RS02465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02465;old_locus_tag=LPH39_02465 NZ_CP087677.1 Protein Homology CDS 586343 588931 . - 0 ID=cds-WP_230428230.1;Parent=gene-LPH39_RS02465;Dbxref=Genbank:WP_230428230.1;Name=WP_230428230.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338007.1;locus_tag=LPH39_RS02465;product=calcium-binding protein;protein_id=WP_230428230.1;transl_table=11 NZ_CP087677.1 RefSeq gene 589265 589468 . - . ID=gene-LPH39_RS02470;Name=LPH39_RS02470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02470;old_locus_tag=LPH39_02470 NZ_CP087677.1 GeneMarkS-2+ CDS 589265 589468 . - 0 ID=cds-WP_081755452.1;Parent=gene-LPH39_RS02470;Dbxref=Genbank:WP_081755452.1;Name=WP_081755452.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02470;product=hypothetical protein;protein_id=WP_081755452.1;transl_table=11 NZ_CP087677.1 RefSeq gene 589468 589881 . - . ID=gene-LPH39_RS02475;Name=LPH39_RS02475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02475;old_locus_tag=LPH39_02475 NZ_CP087677.1 Protein Homology CDS 589468 589881 . - 0 ID=cds-WP_230428231.1;Parent=gene-LPH39_RS02475;Dbxref=Genbank:WP_230428231.1;Name=WP_230428231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098140.1;locus_tag=LPH39_RS02475;product=hypothetical protein;protein_id=WP_230428231.1;transl_table=11 NZ_CP087677.1 RefSeq gene 590038 590568 . - . ID=gene-LPH39_RS02480;Name=LPH39_RS02480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02480;old_locus_tag=LPH39_02480 NZ_CP087677.1 Protein Homology CDS 590038 590568 . - 0 ID=cds-WP_201745726.1;Parent=gene-LPH39_RS02480;Dbxref=Genbank:WP_201745726.1;Name=WP_201745726.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382698.1;locus_tag=LPH39_RS02480;product=hypothetical protein;protein_id=WP_201745726.1;transl_table=11 NZ_CP087677.1 RefSeq gene 590796 591086 . - . ID=gene-LPH39_RS02485;Name=LPH39_RS02485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02485;old_locus_tag=LPH39_02485 NZ_CP087677.1 GeneMarkS-2+ CDS 590796 591086 . - 0 ID=cds-WP_038271516.1;Parent=gene-LPH39_RS02485;Dbxref=Genbank:WP_038271516.1;Name=WP_038271516.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02485;product=hypothetical protein;protein_id=WP_038271516.1;transl_table=11 NZ_CP087677.1 RefSeq gene 591079 591579 . - . ID=gene-LPH39_RS02490;Name=LPH39_RS02490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02490;old_locus_tag=LPH39_02490 NZ_CP087677.1 Protein Homology CDS 591079 591579 . - 0 ID=cds-WP_230428232.1;Parent=gene-LPH39_RS02490;Dbxref=Genbank:WP_230428232.1;Name=WP_230428232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893188.1;locus_tag=LPH39_RS02490;product=hypothetical protein;protein_id=WP_230428232.1;transl_table=11 NZ_CP087677.1 RefSeq gene 591778 592344 . - . ID=gene-LPH39_RS02495;Name=LPH39_RS02495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02495;old_locus_tag=LPH39_02495 NZ_CP087677.1 Protein Homology CDS 591778 592344 . - 0 ID=cds-WP_038271519.1;Parent=gene-LPH39_RS02495;Dbxref=Genbank:WP_038271519.1;Name=WP_038271519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088656.1;locus_tag=LPH39_RS02495;product=hypothetical protein;protein_id=WP_038271519.1;transl_table=11 NZ_CP087677.1 RefSeq gene 592493 592831 . - . ID=gene-LPH39_RS02500;Name=LPH39_RS02500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02500;old_locus_tag=LPH39_02500 NZ_CP087677.1 GeneMarkS-2+ CDS 592493 592831 . - 0 ID=cds-WP_152536630.1;Parent=gene-LPH39_RS02500;Dbxref=Genbank:WP_152536630.1;Name=WP_152536630.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02500;product=hypothetical protein;protein_id=WP_152536630.1;transl_table=11 NZ_CP087677.1 RefSeq gene 592824 593261 . - . ID=gene-LPH39_RS02505;Name=LPH39_RS02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02505;old_locus_tag=LPH39_02505 NZ_CP087677.1 Protein Homology CDS 592824 593261 . - 0 ID=cds-WP_038271543.1;Parent=gene-LPH39_RS02505;Dbxref=Genbank:WP_038271543.1;Name=WP_038271543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088654.1;locus_tag=LPH39_RS02505;product=hypothetical protein;protein_id=WP_038271543.1;transl_table=11 NZ_CP087677.1 RefSeq gene 593515 594069 . - . ID=gene-LPH39_RS02510;Name=LPH39_RS02510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02510;old_locus_tag=LPH39_02510 NZ_CP087677.1 Protein Homology CDS 593515 594069 . - 0 ID=cds-WP_038271521.1;Parent=gene-LPH39_RS02510;Dbxref=Genbank:WP_038271521.1;Name=WP_038271521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098139.1;locus_tag=LPH39_RS02510;product=hypothetical protein;protein_id=WP_038271521.1;transl_table=11 NZ_CP087677.1 RefSeq gene 594020 594469 . - . ID=gene-LPH39_RS02515;Name=LPH39_RS02515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02515;old_locus_tag=LPH39_02515 NZ_CP087677.1 GeneMarkS-2+ CDS 594020 594469 . - 0 ID=cds-WP_038271522.1;Parent=gene-LPH39_RS02515;Dbxref=Genbank:WP_038271522.1;Name=WP_038271522.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02515;product=hypothetical protein;protein_id=WP_038271522.1;transl_table=11 NZ_CP087677.1 RefSeq gene 594510 595385 . - . ID=gene-LPH39_RS02520;Name=LPH39_RS02520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02520;old_locus_tag=LPH39_02520 NZ_CP087677.1 Protein Homology CDS 594510 595385 . - 0 ID=cds-WP_038271523.1;Parent=gene-LPH39_RS02520;Dbxref=Genbank:WP_038271523.1;Name=WP_038271523.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174296.1;locus_tag=LPH39_RS02520;product=polyprenyl synthetase family protein;protein_id=WP_038271523.1;transl_table=11 NZ_CP087677.1 RefSeq gene 595382 595648 . - . ID=gene-LPH39_RS02525;Name=LPH39_RS02525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02525;old_locus_tag=LPH39_02525 NZ_CP087677.1 Protein Homology CDS 595382 595648 . - 0 ID=cds-WP_038271524.1;Parent=gene-LPH39_RS02525;Dbxref=Genbank:WP_038271524.1;Name=WP_038271524.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088658.1;locus_tag=LPH39_RS02525;product=exodeoxyribonuclease VII small subunit;protein_id=WP_038271524.1;transl_table=11 NZ_CP087677.1 RefSeq gene 595680 596987 . - . ID=gene-LPH39_RS02530;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=LPH39_RS02530;old_locus_tag=LPH39_02530 NZ_CP087677.1 Protein Homology CDS 595680 596987 . - 0 ID=cds-WP_038271545.1;Parent=gene-LPH39_RS02530;Dbxref=Genbank:WP_038271545.1;Name=WP_038271545.1;Ontology_term=GO:0006400,GO:0016879;gbkey=CDS;gene=tilS;go_function=ligase activity%2C forming carbon-nitrogen bonds|0016879||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851476.1;locus_tag=LPH39_RS02530;product=tRNA lysidine(34) synthetase TilS;protein_id=WP_038271545.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 597387 598748 . - . ID=gene-LPH39_RS02535;Name=LPH39_RS02535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS02535;old_locus_tag=LPH39_02535;pseudo=true NZ_CP087677.1 Protein Homology CDS 597387 598748 . - 0 ID=cds-LPH39_RS02535;Parent=gene-LPH39_RS02535;Note=frameshifted;Ontology_term=GO:0016791;gbkey=CDS;go_function=phosphatase activity|0016791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088661.1;locus_tag=LPH39_RS02535;product=alkaline phosphatase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 598994 600307 . + . ID=gene-LPH39_RS02540;Name=LPH39_RS02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02540;old_locus_tag=LPH39_02540 NZ_CP087677.1 Protein Homology CDS 598994 600307 . + 0 ID=cds-WP_038271525.1;Parent=gene-LPH39_RS02540;Dbxref=Genbank:WP_038271525.1;Name=WP_038271525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338012.1;locus_tag=LPH39_RS02540;product=dicarboxylate/amino acid:cation symporter;protein_id=WP_038271525.1;transl_table=11 NZ_CP087677.1 RefSeq gene 600777 601478 . - . ID=gene-LPH39_RS02545;Name=LPH39_RS02545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02545;old_locus_tag=LPH39_02545 NZ_CP087677.1 Protein Homology CDS 600777 601478 . - 0 ID=cds-WP_081755453.1;Parent=gene-LPH39_RS02545;Dbxref=Genbank:WP_081755453.1;Name=WP_081755453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508276.1;locus_tag=LPH39_RS02545;product=C40 family peptidase;protein_id=WP_081755453.1;transl_table=11 NZ_CP087677.1 RefSeq gene 601679 602218 . - . ID=gene-LPH39_RS02550;Name=LPH39_RS02550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02550;old_locus_tag=LPH39_02550 NZ_CP087677.1 Protein Homology CDS 601679 602218 . - 0 ID=cds-WP_171898056.1;Parent=gene-LPH39_RS02550;Dbxref=Genbank:WP_171898056.1;Name=WP_171898056.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912976.1;locus_tag=LPH39_RS02550;product=C40 family peptidase;protein_id=WP_171898056.1;transl_table=11 NZ_CP087677.1 RefSeq gene 602334 602813 . + . ID=gene-LPH39_RS02555;Name=LPH39_RS02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02555;old_locus_tag=LPH39_02555 NZ_CP087677.1 Protein Homology CDS 602334 602813 . + 0 ID=cds-WP_038271526.1;Parent=gene-LPH39_RS02555;Dbxref=Genbank:WP_038271526.1;Name=WP_038271526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083483.1;locus_tag=LPH39_RS02555;product=peptidylprolyl isomerase;protein_id=WP_038271526.1;transl_table=11 NZ_CP087677.1 RefSeq gene 602903 604144 . + . ID=gene-LPH39_RS02560;Name=LPH39_RS02560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02560;old_locus_tag=LPH39_02560 NZ_CP087677.1 Protein Homology CDS 602903 604144 . + 0 ID=cds-WP_230428295.1;Parent=gene-LPH39_RS02560;Dbxref=Genbank:WP_230428295.1;Name=WP_230428295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098144.1;locus_tag=LPH39_RS02560;product=DUF418 domain-containing protein;protein_id=WP_230428295.1;transl_table=11 NZ_CP087677.1 RefSeq gene 604508 605056 . - . ID=gene-LPH39_RS02565;Name=LPH39_RS02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02565;old_locus_tag=LPH39_02565 NZ_CP087677.1 Protein Homology CDS 604508 605056 . - 0 ID=cds-WP_069636201.1;Parent=gene-LPH39_RS02565;Dbxref=Genbank:WP_069636201.1;Name=WP_069636201.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024736.2;locus_tag=LPH39_RS02565;product=transposase;protein_id=WP_069636201.1;transl_table=11 NZ_CP087677.1 RefSeq gene 605606 606268 . + . ID=gene-LPH39_RS02570;Name=LPH39_RS02570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02570;old_locus_tag=LPH39_02570 NZ_CP087677.1 Protein Homology CDS 605606 606268 . + 0 ID=cds-WP_038270444.1;Parent=gene-LPH39_RS02570;Dbxref=Genbank:WP_038270444.1;Name=WP_038270444.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019182637.1;locus_tag=LPH39_RS02570;product=rhomboid family intramembrane serine protease;protein_id=WP_038270444.1;transl_table=11 NZ_CP087677.1 RefSeq gene 607046 607207 . + . ID=gene-LPH39_RS02575;Name=LPH39_RS02575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02575;old_locus_tag=LPH39_02575 NZ_CP087677.1 GeneMarkS-2+ CDS 607046 607207 . + 0 ID=cds-WP_160165128.1;Parent=gene-LPH39_RS02575;Dbxref=Genbank:WP_160165128.1;Name=WP_160165128.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02575;product=hypothetical protein;protein_id=WP_160165128.1;transl_table=11 NZ_CP087677.1 RefSeq gene 607742 607918 . - . ID=gene-LPH39_RS02580;Name=LPH39_RS02580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02580;old_locus_tag=LPH39_02580 NZ_CP087677.1 GeneMarkS-2+ CDS 607742 607918 . - 0 ID=cds-WP_160165127.1;Parent=gene-LPH39_RS02580;Dbxref=Genbank:WP_160165127.1;Name=WP_160165127.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02580;product=hypothetical protein;protein_id=WP_160165127.1;transl_table=11 NZ_CP087677.1 RefSeq gene 608469 609152 . - . ID=gene-LPH39_RS02585;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=LPH39_RS02585;old_locus_tag=LPH39_02585 NZ_CP087677.1 Protein Homology CDS 608469 609152 . - 0 ID=cds-WP_114867173.1;Parent=gene-LPH39_RS02585;Dbxref=Genbank:WP_114867173.1;Name=WP_114867173.1;Ontology_term=GO:0006281,GO:0003906;gbkey=CDS;gene=nth;go_function=DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851466.1;locus_tag=LPH39_RS02585;product=endonuclease III;protein_id=WP_114867173.1;transl_table=11 NZ_CP087677.1 RefSeq gene 609152 609523 . - . ID=gene-LPH39_RS02590;Name=LPH39_RS02590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02590;old_locus_tag=LPH39_02590 NZ_CP087677.1 Protein Homology CDS 609152 609523 . - 0 ID=cds-WP_038270441.1;Parent=gene-LPH39_RS02590;Dbxref=Genbank:WP_038270441.1;Name=WP_038270441.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019185886.1;locus_tag=LPH39_RS02590;product=hypothetical protein;protein_id=WP_038270441.1;transl_table=11 NZ_CP087677.1 RefSeq gene 609711 609917 . - . ID=gene-LPH39_RS02595;Name=LPH39_RS02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02595;old_locus_tag=LPH39_02595 NZ_CP087677.1 GeneMarkS-2+ CDS 609711 609917 . - 0 ID=cds-WP_160165126.1;Parent=gene-LPH39_RS02595;Dbxref=Genbank:WP_160165126.1;Name=WP_160165126.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02595;product=hypothetical protein;protein_id=WP_160165126.1;transl_table=11 NZ_CP087677.1 RefSeq gene 610329 611027 . + . ID=gene-LPH39_RS02600;Name=LPH39_RS02600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02600;old_locus_tag=LPH39_02600 NZ_CP087677.1 Protein Homology CDS 610329 611027 . + 0 ID=cds-WP_038270440.1;Parent=gene-LPH39_RS02600;Dbxref=Genbank:WP_038270440.1;Name=WP_038270440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804447.1;locus_tag=LPH39_RS02600;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_038270440.1;transl_table=11 NZ_CP087677.1 RefSeq gene 611278 611982 . + . ID=gene-LPH39_RS02605;Name=LPH39_RS02605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02605;old_locus_tag=LPH39_02605 NZ_CP087677.1 Protein Homology CDS 611278 611982 . + 0 ID=cds-WP_051482255.1;Parent=gene-LPH39_RS02605;Dbxref=Genbank:WP_051482255.1;Name=WP_051482255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010343964.1;locus_tag=LPH39_RS02605;product=CoA pyrophosphatase;protein_id=WP_051482255.1;transl_table=11 NZ_CP087677.1 RefSeq gene 612698 612785 . + . ID=gene-LPH39_RS02610;Name=LPH39_RS02610;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS02610;old_locus_tag=LPH39_02610 NZ_CP087677.1 tRNAscan-SE tRNA 612698 612785 . + . ID=rna-LPH39_RS02610;Parent=gene-LPH39_RS02610;anticodon=(pos:612732..612734);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS02610;product=tRNA-Ser NZ_CP087677.1 tRNAscan-SE exon 612698 612785 . + . ID=exon-LPH39_RS02610-1;Parent=rna-LPH39_RS02610;anticodon=(pos:612732..612734);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS02610;product=tRNA-Ser NZ_CP087677.1 RefSeq gene 612963 613925 . + . ID=gene-LPH39_RS02615;Name=LPH39_RS02615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02615;old_locus_tag=LPH39_02615 NZ_CP087677.1 Protein Homology CDS 612963 613925 . + 0 ID=cds-WP_051482254.1;Parent=gene-LPH39_RS02615;Dbxref=Genbank:WP_051482254.1;Name=WP_051482254.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013884.2;locus_tag=LPH39_RS02615;product=acyltransferase;protein_id=WP_051482254.1;transl_table=11 NZ_CP087677.1 RefSeq gene 614265 614390 . - . ID=gene-LPH39_RS11970;Name=LPH39_RS11970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11970 NZ_CP087677.1 GeneMarkS-2+ CDS 614265 614390 . - 0 ID=cds-WP_267903157.1;Parent=gene-LPH39_RS11970;Dbxref=Genbank:WP_267903157.1;Name=WP_267903157.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11970;product=hypothetical protein;protein_id=WP_267903157.1;transl_table=11 NZ_CP087677.1 RefSeq gene 614387 614806 . - . ID=gene-LPH39_RS02620;Name=LPH39_RS02620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02620;old_locus_tag=LPH39_02620 NZ_CP087677.1 GeneMarkS-2+ CDS 614387 614806 . - 0 ID=cds-WP_038270439.1;Parent=gene-LPH39_RS02620;Dbxref=Genbank:WP_038270439.1;Name=WP_038270439.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02620;product=hypothetical protein;protein_id=WP_038270439.1;transl_table=11 NZ_CP087677.1 RefSeq gene 615141 615299 . - . ID=gene-LPH39_RS02625;Name=LPH39_RS02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02625;old_locus_tag=LPH39_02625 NZ_CP087677.1 GeneMarkS-2+ CDS 615141 615299 . - 0 ID=cds-WP_160165125.1;Parent=gene-LPH39_RS02625;Dbxref=Genbank:WP_160165125.1;Name=WP_160165125.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02625;product=hypothetical protein;protein_id=WP_160165125.1;transl_table=11 NZ_CP087677.1 RefSeq gene 616334 617185 . - . ID=gene-LPH39_RS02630;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=LPH39_RS02630;old_locus_tag=LPH39_02630 NZ_CP087677.1 Protein Homology CDS 616334 617185 . - 0 ID=cds-WP_038270438.1;Parent=gene-LPH39_RS02630;Dbxref=Genbank:WP_038270438.1;Name=WP_038270438.1;Ontology_term=GO:0019632,GO:0004764;gbkey=CDS;gene=aroE;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA;go_process=shikimate metabolic process|0019632||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340310.1;locus_tag=LPH39_RS02630;product=shikimate dehydrogenase;protein_id=WP_038270438.1;transl_table=11 NZ_CP087677.1 RefSeq gene 619308 620117 . + . ID=gene-LPH39_RS02635;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;locus_tag=LPH39_RS02635;old_locus_tag=LPH39_02635 NZ_CP087677.1 Protein Homology CDS 619308 620117 . + 0 ID=cds-WP_038270437.1;Parent=gene-LPH39_RS02635;Dbxref=Genbank:WP_038270437.1;Name=WP_038270437.1;Ontology_term=GO:0009228,GO:0008902,GO:0008972;gbkey=CDS;gene=thiD;go_function=hydroxymethylpyrimidine kinase activity|0008902||IEA,phosphomethylpyrimidine kinase activity|0008972||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853073.1;locus_tag=LPH39_RS02635;product=bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase;protein_id=WP_038270437.1;transl_table=11 NZ_CP087677.1 RefSeq gene 620480 620668 . - . ID=gene-LPH39_RS02640;Name=LPH39_RS02640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02640;old_locus_tag=LPH39_02640 NZ_CP087677.1 GeneMarkS-2+ CDS 620480 620668 . - 0 ID=cds-WP_114867174.1;Parent=gene-LPH39_RS02640;Dbxref=Genbank:WP_114867174.1;Name=WP_114867174.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02640;product=hypothetical protein;protein_id=WP_114867174.1;transl_table=11 NZ_CP087677.1 RefSeq gene 621897 622067 . - . ID=gene-LPH39_RS02645;Name=LPH39_RS02645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02645;old_locus_tag=LPH39_02645 NZ_CP087677.1 GeneMarkS-2+ CDS 621897 622067 . - 0 ID=cds-WP_160165123.1;Parent=gene-LPH39_RS02645;Dbxref=Genbank:WP_160165123.1;Name=WP_160165123.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02645;product=hypothetical protein;protein_id=WP_160165123.1;transl_table=11 NZ_CP087677.1 RefSeq gene 622445 622891 . - . ID=gene-LPH39_RS02650;Name=LPH39_RS02650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02650;old_locus_tag=LPH39_02650 NZ_CP087677.1 GeneMarkS-2+ CDS 622445 622891 . - 0 ID=cds-WP_152536576.1;Parent=gene-LPH39_RS02650;Dbxref=Genbank:WP_152536576.1;Name=WP_152536576.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02650;product=hypothetical protein;protein_id=WP_152536576.1;transl_table=11 NZ_CP087677.1 RefSeq gene 623041 625293 . - . ID=gene-LPH39_RS02655;Name=LPH39_RS02655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02655;old_locus_tag=LPH39_02655 NZ_CP087677.1 Protein Homology CDS 623041 625293 . - 0 ID=cds-WP_267903179.1;Parent=gene-LPH39_RS02655;Dbxref=Genbank:WP_267903179.1;Name=WP_267903179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411230.1;locus_tag=LPH39_RS02655;product=protein-disulfide reductase DsbD;protein_id=WP_267903179.1;transl_table=11 NZ_CP087677.1 RefSeq gene 625332 625670 . - . ID=gene-LPH39_RS02660;Name=LPH39_RS02660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02660;old_locus_tag=LPH39_02660 NZ_CP087677.1 Protein Homology CDS 625332 625670 . - 0 ID=cds-WP_038270433.1;Parent=gene-LPH39_RS02660;Dbxref=Genbank:WP_038270433.1;Name=WP_038270433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893143.1;locus_tag=LPH39_RS02660;product=divalent-cation tolerance protein CutA;protein_id=WP_038270433.1;transl_table=11 NZ_CP087677.1 RefSeq gene 626262 626549 . + . ID=gene-LPH39_RS02665;Name=LPH39_RS02665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02665;old_locus_tag=LPH39_02665 NZ_CP087677.1 Protein Homology CDS 626262 626549 . + 0 ID=cds-WP_038270432.1;Parent=gene-LPH39_RS02665;Dbxref=Genbank:WP_038270432.1;Name=WP_038270432.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303525.1;locus_tag=LPH39_RS02665;product=co-chaperone GroES;protein_id=WP_038270432.1;transl_table=11 NZ_CP087677.1 RefSeq gene 626660 628300 . + . ID=gene-LPH39_RS02670;Name=groL;gbkey=Gene;gene=groL;gene_biotype=protein_coding;locus_tag=LPH39_RS02670;old_locus_tag=LPH39_02670 NZ_CP087677.1 Protein Homology CDS 626660 628300 . + 0 ID=cds-WP_038270431.1;Parent=gene-LPH39_RS02670;Dbxref=Genbank:WP_038270431.1;Name=WP_038270431.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds;Ontology_term=GO:0006457,GO:0005515,GO:0016887;gbkey=CDS;gene=groL;go_function=protein binding|0005515||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411226.1;locus_tag=LPH39_RS02670;product=chaperonin GroEL;protein_id=WP_038270431.1;transl_table=11 NZ_CP087677.1 RefSeq gene 629491 631530 . - . ID=gene-LPH39_RS02675;Name=LPH39_RS02675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02675;old_locus_tag=LPH39_02675 NZ_CP087677.1 Protein Homology CDS 629491 631530 . - 0 ID=cds-WP_038270430.1;Parent=gene-LPH39_RS02675;Dbxref=Genbank:WP_038270430.1;Name=WP_038270430.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083509.1;locus_tag=LPH39_RS02675;product=hypothetical protein;protein_id=WP_038270430.1;transl_table=11 NZ_CP087677.1 RefSeq gene 631553 632152 . - . ID=gene-LPH39_RS02680;Name=LPH39_RS02680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02680;old_locus_tag=LPH39_02680 NZ_CP087677.1 Protein Homology CDS 631553 632152 . - 0 ID=cds-WP_038270429.1;Parent=gene-LPH39_RS02680;Dbxref=Genbank:WP_038270429.1;Name=WP_038270429.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852776.1;locus_tag=LPH39_RS02680;product=hypothetical protein;protein_id=WP_038270429.1;transl_table=11 NZ_CP087677.1 RefSeq gene 632149 632556 . - . ID=gene-LPH39_RS02685;Name=LPH39_RS02685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02685;old_locus_tag=LPH39_02685 NZ_CP087677.1 Protein Homology CDS 632149 632556 . - 0 ID=cds-WP_038270428.1;Parent=gene-LPH39_RS02685;Dbxref=Genbank:WP_038270428.1;Name=WP_038270428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088687.1;locus_tag=LPH39_RS02685;product=GtrA family protein;protein_id=WP_038270428.1;transl_table=11 NZ_CP087677.1 RefSeq gene 632540 633493 . - . ID=gene-LPH39_RS02690;Name=LPH39_RS02690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02690;old_locus_tag=LPH39_02690 NZ_CP087677.1 Protein Homology CDS 632540 633493 . - 0 ID=cds-WP_038270427.1;Parent=gene-LPH39_RS02690;Dbxref=Genbank:WP_038270427.1;Name=WP_038270427.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083510.1;locus_tag=LPH39_RS02690;product=glycosyltransferase;protein_id=WP_038270427.1;transl_table=11 NZ_CP087677.1 RefSeq gene 633496 634440 . - . ID=gene-LPH39_RS02695;Name=LPH39_RS02695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02695;old_locus_tag=LPH39_02695 NZ_CP087677.1 Protein Homology CDS 633496 634440 . - 0 ID=cds-WP_038270426.1;Parent=gene-LPH39_RS02695;Dbxref=Genbank:WP_038270426.1;Name=WP_038270426.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088689.1;locus_tag=LPH39_RS02695;product=SDR family oxidoreductase;protein_id=WP_038270426.1;transl_table=11 NZ_CP087677.1 RefSeq gene 634627 635541 . - . ID=gene-LPH39_RS02700;Name=LPH39_RS02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02700;old_locus_tag=LPH39_02700 NZ_CP087677.1 Protein Homology CDS 634627 635541 . - 0 ID=cds-WP_038270425.1;Parent=gene-LPH39_RS02700;Dbxref=Genbank:WP_038270425.1;Name=WP_038270425.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035851.1;locus_tag=LPH39_RS02700;product=GDP-mannose 4%2C6-dehydratase;protein_id=WP_038270425.1;transl_table=11 NZ_CP087677.1 RefSeq gene 635541 636581 . - . ID=gene-LPH39_RS02705;Name=gmd;gbkey=Gene;gene=gmd;gene_biotype=protein_coding;locus_tag=LPH39_RS02705;old_locus_tag=LPH39_02705 NZ_CP087677.1 Protein Homology CDS 635541 636581 . - 0 ID=cds-WP_038270424.1;Parent=gene-LPH39_RS02705;Dbxref=Genbank:WP_038270424.1;Name=WP_038270424.1;Ontology_term=GO:0000271,GO:0008446;gbkey=CDS;gene=gmd;go_function=GDP-mannose 4%2C6-dehydratase activity|0008446||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852782.1;locus_tag=LPH39_RS02705;product=GDP-mannose 4%2C6-dehydratase;protein_id=WP_038270424.1;transl_table=11 NZ_CP087677.1 RefSeq gene 636673 639216 . - . ID=gene-LPH39_RS02710;Name=LPH39_RS02710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02710;old_locus_tag=LPH39_02710 NZ_CP087677.1 Protein Homology CDS 636673 639216 . - 0 ID=cds-WP_038270423.1;Parent=gene-LPH39_RS02710;Dbxref=Genbank:WP_038270423.1;Name=WP_038270423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852783.1;locus_tag=LPH39_RS02710;product=glycosyltransferase family 1 protein;protein_id=WP_038270423.1;transl_table=11 NZ_CP087677.1 RefSeq gene 639220 640602 . - . ID=gene-LPH39_RS02715;Name=LPH39_RS02715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02715;old_locus_tag=LPH39_02715 NZ_CP087677.1 Protein Homology CDS 639220 640602 . - 0 ID=cds-WP_038270422.1;Parent=gene-LPH39_RS02715;Dbxref=Genbank:WP_038270422.1;Name=WP_038270422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088692.1;locus_tag=LPH39_RS02715;product=FkbM family methyltransferase;protein_id=WP_038270422.1;transl_table=11 NZ_CP087677.1 RefSeq gene 640870 642240 . - . ID=gene-LPH39_RS02720;Name=LPH39_RS02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02720;old_locus_tag=LPH39_02720 NZ_CP087677.1 Protein Homology CDS 640870 642240 . - 0 ID=cds-WP_038270421.1;Parent=gene-LPH39_RS02720;Dbxref=Genbank:WP_038270421.1;Name=WP_038270421.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157251.1;locus_tag=LPH39_RS02720;product=pyridoxal-phosphate dependent enzyme;protein_id=WP_038270421.1;transl_table=11 NZ_CP087677.1 RefSeq gene 642386 642604 . - . ID=gene-LPH39_RS02725;Name=LPH39_RS02725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02725;old_locus_tag=LPH39_02725 NZ_CP087677.1 Protein Homology CDS 642386 642604 . - 0 ID=cds-WP_038270420.1;Parent=gene-LPH39_RS02725;Dbxref=Genbank:WP_038270420.1;Name=WP_038270420.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237985.1;locus_tag=LPH39_RS02725;product=YdcH family protein;protein_id=WP_038270420.1;transl_table=11 NZ_CP087677.1 RefSeq gene 642933 643829 . - . ID=gene-LPH39_RS02730;Name=LPH39_RS02730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02730;old_locus_tag=LPH39_02730 NZ_CP087677.1 Protein Homology CDS 642933 643829 . - 0 ID=cds-WP_038270460.1;Parent=gene-LPH39_RS02730;Dbxref=Genbank:WP_038270460.1;Name=WP_038270460.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161845.1;locus_tag=LPH39_RS02730;product=membrane protein;protein_id=WP_038270460.1;transl_table=11 NZ_CP087677.1 RefSeq gene 643832 644224 . - . ID=gene-LPH39_RS02735;Name=LPH39_RS02735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02735;old_locus_tag=LPH39_02735 NZ_CP087677.1 Protein Homology CDS 643832 644224 . - 0 ID=cds-WP_038270419.1;Parent=gene-LPH39_RS02735;Dbxref=Genbank:WP_038270419.1;Name=WP_038270419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088696.1;locus_tag=LPH39_RS02735;product=DUF4398 domain-containing protein;protein_id=WP_038270419.1;transl_table=11 NZ_CP087677.1 RefSeq gene 644634 646913 . + . ID=gene-LPH39_RS02740;Name=LPH39_RS02740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02740;old_locus_tag=LPH39_02740 NZ_CP087677.1 Protein Homology CDS 644634 646913 . + 0 ID=cds-WP_038270418.1;Parent=gene-LPH39_RS02740;Dbxref=Genbank:WP_038270418.1;Name=WP_038270418.1;Ontology_term=GO:0015891,GO:0015344;gbkey=CDS;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088697.1;locus_tag=LPH39_RS02740;product=catecholate siderophore receptor Fiu;protein_id=WP_038270418.1;transl_table=11 NZ_CP087677.1 RefSeq gene 646957 647649 . + . ID=gene-LPH39_RS02745;Name=LPH39_RS02745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02745;old_locus_tag=LPH39_02745 NZ_CP087677.1 Protein Homology CDS 646957 647649 . + 0 ID=cds-WP_038270417.1;Parent=gene-LPH39_RS02745;Dbxref=Genbank:WP_038270417.1;Name=WP_038270417.1;Ontology_term=GO:0005506,GO:0016706,GO:0031418;gbkey=CDS;go_function=iron ion binding|0005506||IEA,2-oxoglutarate-dependent dioxygenase activity|0016706||IEA,L-ascorbic acid binding|0031418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088698.1;locus_tag=LPH39_RS02745;product=Fe2+-dependent dioxygenase;protein_id=WP_038270417.1;transl_table=11 NZ_CP087677.1 RefSeq gene 647658 648308 . + . ID=gene-LPH39_RS02750;Name=LPH39_RS02750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02750;old_locus_tag=LPH39_02750 NZ_CP087677.1 Protein Homology CDS 647658 648308 . + 0 ID=cds-WP_038270416.1;Parent=gene-LPH39_RS02750;Dbxref=Genbank:WP_038270416.1;Name=WP_038270416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487779.1;locus_tag=LPH39_RS02750;product=PepSY-associated TM helix domain-containing protein;protein_id=WP_038270416.1;transl_table=11 NZ_CP087677.1 RefSeq gene 648328 648840 . + . ID=gene-LPH39_RS02755;Name=LPH39_RS02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02755;old_locus_tag=LPH39_02755 NZ_CP087677.1 Protein Homology CDS 648328 648840 . + 0 ID=cds-WP_038270415.1;Parent=gene-LPH39_RS02755;Dbxref=Genbank:WP_038270415.1;Name=WP_038270415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450672.1;locus_tag=LPH39_RS02755;product=DUF2271 domain-containing protein;protein_id=WP_038270415.1;transl_table=11 NZ_CP087677.1 RefSeq gene 648875 649678 . + . ID=gene-LPH39_RS02760;Name=LPH39_RS02760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02760;old_locus_tag=LPH39_02760 NZ_CP087677.1 Protein Homology CDS 648875 649678 . + 0 ID=cds-WP_038270414.1;Parent=gene-LPH39_RS02760;Dbxref=Genbank:WP_038270414.1;Name=WP_038270414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237449.1;locus_tag=LPH39_RS02760;product=DUF4198 domain-containing protein;protein_id=WP_038270414.1;transl_table=11 NZ_CP087677.1 RefSeq gene 649744 650715 . + . ID=gene-LPH39_RS02765;Name=LPH39_RS02765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02765;old_locus_tag=LPH39_02765 NZ_CP087677.1 Protein Homology CDS 649744 650715 . + 0 ID=cds-WP_038270413.1;Parent=gene-LPH39_RS02765;Dbxref=Genbank:WP_038270413.1;Name=WP_038270413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851166.1;locus_tag=LPH39_RS02765;product=FAD:protein FMN transferase;protein_id=WP_038270413.1;transl_table=11 NZ_CP087677.1 RefSeq gene 650712 652292 . + . ID=gene-LPH39_RS02770;Name=LPH39_RS02770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02770;old_locus_tag=LPH39_02770 NZ_CP087677.1 Protein Homology CDS 650712 652292 . + 0 ID=cds-WP_038270412.1;Parent=gene-LPH39_RS02770;Dbxref=Genbank:WP_038270412.1;Name=WP_038270412.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019659424.1;locus_tag=LPH39_RS02770;product=sulfite reductase subunit alpha;protein_id=WP_038270412.1;transl_table=11 NZ_CP087677.1 RefSeq gene 653148 653477 . - . ID=gene-LPH39_RS02775;Name=LPH39_RS02775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02775;old_locus_tag=LPH39_02775 NZ_CP087677.1 Protein Homology CDS 653148 653477 . - 0 ID=cds-WP_038270411.1;Parent=gene-LPH39_RS02775;Dbxref=Genbank:WP_038270411.1;Name=WP_038270411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851167.1;locus_tag=LPH39_RS02775;product=helix-hairpin-helix domain-containing protein;protein_id=WP_038270411.1;transl_table=11 NZ_CP087677.1 RefSeq gene 654650 654835 . + . ID=gene-LPH39_RS02780;Name=LPH39_RS02780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02780;old_locus_tag=LPH39_02780 NZ_CP087677.1 GeneMarkS-2+ CDS 654650 654835 . + 0 ID=cds-WP_152536575.1;Parent=gene-LPH39_RS02780;Dbxref=Genbank:WP_152536575.1;Name=WP_152536575.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02780;product=hypothetical protein;protein_id=WP_152536575.1;transl_table=11 NZ_CP087677.1 RefSeq gene 655369 656388 . + . ID=gene-LPH39_RS02785;Name=LPH39_RS02785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02785;old_locus_tag=LPH39_02785 NZ_CP087677.1 Protein Homology CDS 655369 656388 . + 0 ID=cds-WP_171898092.1;Parent=gene-LPH39_RS02785;Dbxref=Genbank:WP_171898092.1;Name=WP_171898092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009591863.1;locus_tag=LPH39_RS02785;product=phosphotransferase;protein_id=WP_171898092.1;transl_table=11 NZ_CP087677.1 RefSeq gene 656385 657104 . + . ID=gene-LPH39_RS02790;Name=LPH39_RS02790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02790;old_locus_tag=LPH39_02790 NZ_CP087677.1 Protein Homology CDS 656385 657104 . + 0 ID=cds-WP_038270408.1;Parent=gene-LPH39_RS02790;Dbxref=Genbank:WP_038270408.1;Name=WP_038270408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369254.1;locus_tag=LPH39_RS02790;product=nucleotidyltransferase family protein;protein_id=WP_038270408.1;transl_table=11 NZ_CP087677.1 RefSeq gene 657204 657986 . - . ID=gene-LPH39_RS02795;Name=hda;gbkey=Gene;gene=hda;gene_biotype=protein_coding;locus_tag=LPH39_RS02795;old_locus_tag=LPH39_02795 NZ_CP087677.1 Protein Homology CDS 657204 657986 . - 0 ID=cds-WP_081755397.1;Parent=gene-LPH39_RS02795;Dbxref=Genbank:WP_081755397.1;Name=WP_081755397.1;Ontology_term=GO:0032297,GO:0016818;gbkey=CDS;gene=hda;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;go_process=negative regulation of DNA-templated DNA replication initiation|0032297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369247.1;locus_tag=LPH39_RS02795;product=DnaA regulatory inactivator Hda;protein_id=WP_081755397.1;transl_table=11 NZ_CP087677.1 RefSeq gene 657983 659140 . - . ID=gene-LPH39_RS02800;Name=LPH39_RS02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02800;old_locus_tag=LPH39_02800 NZ_CP087677.1 Protein Homology CDS 657983 659140 . - 0 ID=cds-WP_038270407.1;Parent=gene-LPH39_RS02800;Dbxref=Genbank:WP_038270407.1;Name=WP_038270407.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851171.1;locus_tag=LPH39_RS02800;product=AI-2E family transporter;protein_id=WP_038270407.1;transl_table=11 NZ_CP087677.1 RefSeq gene 659137 660237 . - . ID=gene-LPH39_RS02805;Name=LPH39_RS02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02805;old_locus_tag=LPH39_02805 NZ_CP087677.1 Protein Homology CDS 659137 660237 . - 0 ID=cds-WP_162814105.1;Parent=gene-LPH39_RS02805;Dbxref=Genbank:WP_162814105.1;Name=WP_162814105.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382704.1;locus_tag=LPH39_RS02805;product=DUF2066 domain-containing protein;protein_id=WP_162814105.1;transl_table=11 NZ_CP087677.1 RefSeq gene 660352 661407 . + . ID=gene-LPH39_RS02810;Name=purM;gbkey=Gene;gene=purM;gene_biotype=protein_coding;locus_tag=LPH39_RS02810;old_locus_tag=LPH39_02810 NZ_CP087677.1 Protein Homology CDS 660352 661407 . + 0 ID=cds-WP_038270405.1;Parent=gene-LPH39_RS02810;Dbxref=Genbank:WP_038270405.1;Name=WP_038270405.1;Ontology_term=GO:0006189,GO:0009152,GO:0004641;gbkey=CDS;gene=purM;go_function=phosphoribosylformylglycinamidine cyclo-ligase activity|0004641||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098163.1;locus_tag=LPH39_RS02810;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=WP_038270405.1;transl_table=11 NZ_CP087677.1 RefSeq gene 661496 662164 . + . ID=gene-LPH39_RS02815;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=LPH39_RS02815;old_locus_tag=LPH39_02815 NZ_CP087677.1 Protein Homology CDS 661496 662164 . + 0 ID=cds-WP_038270404.1;Parent=gene-LPH39_RS02815;Dbxref=Genbank:WP_038270404.1;Name=WP_038270404.1;Ontology_term=GO:0009152,GO:0004644;gbkey=CDS;gene=purN;go_function=phosphoribosylglycinamide formyltransferase activity|0004644||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083533.1;locus_tag=LPH39_RS02815;product=phosphoribosylglycinamide formyltransferase;protein_id=WP_038270404.1;transl_table=11 NZ_CP087677.1 RefSeq gene 662340 663083 . + . ID=gene-LPH39_RS02820;Name=LPH39_RS02820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02820;old_locus_tag=LPH39_02820 NZ_CP087677.1 Protein Homology CDS 662340 663083 . + 0 ID=cds-WP_230428296.1;Parent=gene-LPH39_RS02820;Dbxref=Genbank:WP_230428296.1;Name=WP_230428296.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005412504.1;locus_tag=LPH39_RS02820;product=DUF3108 domain-containing protein;protein_id=WP_230428296.1;transl_table=11 NZ_CP087677.1 RefSeq gene 663087 663770 . + . ID=gene-LPH39_RS02825;Name=LPH39_RS02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02825;old_locus_tag=LPH39_02825 NZ_CP087677.1 Protein Homology CDS 663087 663770 . + 0 ID=cds-WP_038270402.1;Parent=gene-LPH39_RS02825;Dbxref=Genbank:WP_038270402.1;Name=WP_038270402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852582.1;locus_tag=LPH39_RS02825;product=DUF3108 domain-containing protein;protein_id=WP_038270402.1;transl_table=11 NZ_CP087677.1 RefSeq gene 664336 664998 . - . ID=gene-LPH39_RS02830;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=LPH39_RS02830;old_locus_tag=LPH39_02830 NZ_CP087677.1 Protein Homology CDS 664336 664998 . - 0 ID=cds-WP_038270401.1;Parent=gene-LPH39_RS02830;Dbxref=Genbank:WP_038270401.1;Name=WP_038270401.1;Ontology_term=GO:0015949,GO:0004798;gbkey=CDS;gene=tmk;go_function=thymidylate kinase activity|0004798||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893106.1;locus_tag=LPH39_RS02830;product=dTMP kinase;protein_id=WP_038270401.1;transl_table=11 NZ_CP087677.1 RefSeq gene 665894 667996 . + . ID=gene-LPH39_RS02835;Name=LPH39_RS02835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02835;old_locus_tag=LPH39_02835 NZ_CP087677.1 Protein Homology CDS 665894 667996 . + 0 ID=cds-WP_038270400.1;Parent=gene-LPH39_RS02835;Dbxref=Genbank:WP_038270400.1;Name=WP_038270400.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083537.1;locus_tag=LPH39_RS02835;product=M13 family metallopeptidase;protein_id=WP_038270400.1;transl_table=11 NZ_CP087677.1 RefSeq gene 668992 669510 . + . ID=gene-LPH39_RS02840;Name=fabA;gbkey=Gene;gene=fabA;gene_biotype=protein_coding;locus_tag=LPH39_RS02840;old_locus_tag=LPH39_02840 NZ_CP087677.1 Protein Homology CDS 668992 669510 . + 0 ID=cds-WP_038270397.1;Parent=gene-LPH39_RS02840;Dbxref=Genbank:WP_038270397.1;Name=WP_038270397.1;Ontology_term=GO:0019171;gbkey=CDS;gene=fabA;go_function=3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|0019171||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035827.1;locus_tag=LPH39_RS02840;product=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA;protein_id=WP_038270397.1;transl_table=11 NZ_CP087677.1 RefSeq gene 671097 671960 . + . ID=gene-LPH39_RS02845;Name=ttcA;gbkey=Gene;gene=ttcA;gene_biotype=protein_coding;locus_tag=LPH39_RS02845;old_locus_tag=LPH39_02845 NZ_CP087677.1 Protein Homology CDS 671097 671960 . + 0 ID=cds-WP_230428297.1;Parent=gene-LPH39_RS02845;Dbxref=Genbank:WP_230428297.1;Name=WP_230428297.1;Ontology_term=GO:0008033;gbkey=CDS;gene=ttcA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019397041.1;locus_tag=LPH39_RS02845;product=tRNA 2-thiocytidine(32) synthetase TtcA;protein_id=WP_230428297.1;transl_table=11 NZ_CP087677.1 RefSeq gene 671999 672907 . + . ID=gene-LPH39_RS02850;Name=rdgC;gbkey=Gene;gene=rdgC;gene_biotype=protein_coding;locus_tag=LPH39_RS02850;old_locus_tag=LPH39_02850 NZ_CP087677.1 Protein Homology CDS 671999 672907 . + 0 ID=cds-WP_038270395.1;Parent=gene-LPH39_RS02850;Dbxref=Genbank:WP_038270395.1;Name=WP_038270395.1;gbkey=CDS;gene=rdgC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154674.1;locus_tag=LPH39_RS02850;product=recombination-associated protein RdgC;protein_id=WP_038270395.1;transl_table=11 NZ_CP087677.1 RefSeq gene 672977 673738 . + . ID=gene-LPH39_RS02855;Name=LPH39_RS02855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02855;old_locus_tag=LPH39_02855 NZ_CP087677.1 Protein Homology CDS 672977 673738 . + 0 ID=cds-WP_038270394.1;Parent=gene-LPH39_RS02855;Dbxref=Genbank:WP_038270394.1;Name=WP_038270394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088764.1;locus_tag=LPH39_RS02855;product=SprT family zinc-dependent metalloprotease;protein_id=WP_038270394.1;transl_table=11 NZ_CP087677.1 RefSeq gene 674069 675031 . - . ID=gene-LPH39_RS02860;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;locus_tag=LPH39_RS02860;old_locus_tag=LPH39_02860 NZ_CP087677.1 Protein Homology CDS 674069 675031 . - 0 ID=cds-WP_038270393.1;Parent=gene-LPH39_RS02860;Dbxref=Genbank:WP_038270393.1;Name=WP_038270393.1;Ontology_term=GO:0006779,GO:0004325;gbkey=CDS;gene=hemH;go_function=ferrochelatase activity|0004325||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852273.1;locus_tag=LPH39_RS02860;product=ferrochelatase;protein_id=WP_038270393.1;transl_table=11 NZ_CP087677.1 RefSeq gene 675200 676093 . + . ID=gene-LPH39_RS02865;Name=LPH39_RS02865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02865;old_locus_tag=LPH39_02865 NZ_CP087677.1 Protein Homology CDS 675200 676093 . + 0 ID=cds-WP_038270392.1;Parent=gene-LPH39_RS02865;Dbxref=Genbank:WP_038270392.1;Name=WP_038270392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852274.1;locus_tag=LPH39_RS02865;product=YSC84-related protein;protein_id=WP_038270392.1;transl_table=11 NZ_CP087677.1 RefSeq gene 676168 676383 . + . ID=gene-LPH39_RS02870;Name=LPH39_RS02870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02870;old_locus_tag=LPH39_02870 NZ_CP087677.1 Protein Homology CDS 676168 676383 . + 0 ID=cds-WP_038270391.1;Parent=gene-LPH39_RS02870;Dbxref=Genbank:WP_038270391.1;Name=WP_038270391.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083544.1;locus_tag=LPH39_RS02870;product=Sec-independent protein translocase subunit TatA;protein_id=WP_038270391.1;transl_table=11 NZ_CP087677.1 RefSeq gene 676401 676823 . + . ID=gene-LPH39_RS02875;Name=tatB;gbkey=Gene;gene=tatB;gene_biotype=protein_coding;locus_tag=LPH39_RS02875;old_locus_tag=LPH39_02875 NZ_CP087677.1 Protein Homology CDS 676401 676823 . + 0 ID=cds-WP_038270390.1;Parent=gene-LPH39_RS02875;Dbxref=Genbank:WP_038270390.1;Name=WP_038270390.1;Ontology_term=GO:0015031,GO:0015628;gbkey=CDS;gene=tatB;go_process=protein transport|0015031||IEA,protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088772.1;locus_tag=LPH39_RS02875;product=Sec-independent protein translocase protein TatB;protein_id=WP_038270390.1;transl_table=11 NZ_CP087677.1 RefSeq gene 676820 677560 . + . ID=gene-LPH39_RS02880;Name=tatC;gbkey=Gene;gene=tatC;gene_biotype=protein_coding;locus_tag=LPH39_RS02880;old_locus_tag=LPH39_02880 NZ_CP087677.1 Protein Homology CDS 676820 677560 . + 0 ID=cds-WP_038270389.1;Parent=gene-LPH39_RS02880;Dbxref=Genbank:WP_038270389.1;Name=WP_038270389.1;Ontology_term=GO:0015628,GO:0005886;gbkey=CDS;gene=tatC;go_component=plasma membrane|0005886||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893088.1;locus_tag=LPH39_RS02880;product=twin-arginine translocase subunit TatC;protein_id=WP_038270389.1;transl_table=11 NZ_CP087677.1 RefSeq gene 677624 678496 . - . ID=gene-LPH39_RS02885;Name=LPH39_RS02885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02885;old_locus_tag=LPH39_02885 NZ_CP087677.1 Protein Homology CDS 677624 678496 . - 0 ID=cds-WP_038270388.1;Parent=gene-LPH39_RS02885;Dbxref=Genbank:WP_038270388.1;Name=WP_038270388.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088776.1;locus_tag=LPH39_RS02885;product=BPSS1780 family membrane protein;protein_id=WP_038270388.1;transl_table=11 NZ_CP087677.1 RefSeq gene 678745 679467 . - . ID=gene-LPH39_RS02890;Name=LPH39_RS02890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02890;old_locus_tag=LPH39_02890 NZ_CP087677.1 Protein Homology CDS 678745 679467 . - 0 ID=cds-WP_038270387.1;Parent=gene-LPH39_RS02890;Dbxref=Genbank:WP_038270387.1;Name=WP_038270387.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088782.1;locus_tag=LPH39_RS02890;product=glutamine amidotransferase;protein_id=WP_038270387.1;transl_table=11 NZ_CP087677.1 RefSeq gene 680797 681219 . + . ID=gene-LPH39_RS02895;Name=azu;gbkey=Gene;gene=azu;gene_biotype=protein_coding;locus_tag=LPH39_RS02895;old_locus_tag=LPH39_02895 NZ_CP087677.1 Protein Homology CDS 680797 681219 . + 0 ID=cds-WP_038270457.1;Parent=gene-LPH39_RS02895;Dbxref=Genbank:WP_038270457.1;Name=WP_038270457.1;Ontology_term=GO:0005507,GO:0009055;gbkey=CDS;gene=azu;go_function=copper ion binding|0005507||IEA,electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237306.1;locus_tag=LPH39_RS02895;product=azurin;protein_id=WP_038270457.1;transl_table=11 NZ_CP087677.1 RefSeq gene 682027 683046 . - . ID=gene-LPH39_RS02900;Name=rsgA;gbkey=Gene;gene=rsgA;gene_biotype=protein_coding;locus_tag=LPH39_RS02900;old_locus_tag=LPH39_02900 NZ_CP087677.1 Protein Homology CDS 682027 683046 . - 0 ID=cds-WP_038270385.1;Parent=gene-LPH39_RS02900;Dbxref=Genbank:WP_038270385.1;Name=WP_038270385.1;Ontology_term=GO:0006412,GO:0005525,GO:0043022;gbkey=CDS;gene=rsgA;go_function=GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098172.1;locus_tag=LPH39_RS02900;product=ribosome small subunit-dependent GTPase A;protein_id=WP_038270385.1;transl_table=11 NZ_CP087677.1 RefSeq gene 683442 683807 . - . ID=gene-LPH39_RS02905;Name=LPH39_RS02905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02905;old_locus_tag=LPH39_02905 NZ_CP087677.1 Protein Homology CDS 683442 683807 . - 0 ID=cds-WP_038270384.1;Parent=gene-LPH39_RS02905;Dbxref=Genbank:WP_038270384.1;Name=WP_038270384.1;Ontology_term=GO:0003676,GO:0004518;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893080.1;locus_tag=LPH39_RS02905;product=YraN family protein;protein_id=WP_038270384.1;transl_table=11 NZ_CP087677.1 RefSeq gene 683811 685541 . - . ID=gene-LPH39_RS02910;Name=LPH39_RS02910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02910;old_locus_tag=LPH39_02910 NZ_CP087677.1 Protein Homology CDS 683811 685541 . - 0 ID=cds-WP_038270383.1;Parent=gene-LPH39_RS02910;Dbxref=Genbank:WP_038270383.1;Name=WP_038270383.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083552.1;locus_tag=LPH39_RS02910;product=penicillin-binding protein activator;protein_id=WP_038270383.1;transl_table=11 NZ_CP087677.1 RefSeq gene 685623 686444 . + . ID=gene-LPH39_RS02915;Name=rsmI;gbkey=Gene;gene=rsmI;gene_biotype=protein_coding;locus_tag=LPH39_RS02915;old_locus_tag=LPH39_02915 NZ_CP087677.1 Protein Homology CDS 685623 686444 . + 0 ID=cds-WP_038270382.1;Parent=gene-LPH39_RS02915;Dbxref=Genbank:WP_038270382.1;Name=WP_038270382.1;Ontology_term=GO:0000451,GO:0008649,GO:0008757;gbkey=CDS;gene=rsmI;go_function=rRNA methyltransferase activity|0008649||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=rRNA 2'-O-methylation|0000451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088794.1;locus_tag=LPH39_RS02915;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_038270382.1;transl_table=11 NZ_CP087677.1 RefSeq gene 687519 690635 . + . ID=gene-LPH39_RS02920;Name=LPH39_RS02920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02920;old_locus_tag=LPH39_02920 NZ_CP087677.1 Protein Homology CDS 687519 690635 . + 0 ID=cds-WP_038270380.1;Parent=gene-LPH39_RS02920;Dbxref=Genbank:WP_038270380.1;Name=WP_038270380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852285.1;locus_tag=LPH39_RS02920;product=TonB-dependent receptor;protein_id=WP_038270380.1;transl_table=11 NZ_CP087677.1 RefSeq gene 690804 692885 . + . ID=gene-LPH39_RS02925;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=LPH39_RS02925;old_locus_tag=LPH39_02925 NZ_CP087677.1 Protein Homology CDS 690804 692885 . + 0 ID=cds-WP_038270456.1;Parent=gene-LPH39_RS02925;Dbxref=Genbank:WP_038270456.1;Name=WP_038270456.1;Ontology_term=GO:0006431,GO:0000166,GO:0004825,GO:0005524;gbkey=CDS;gene=metG;go_function=nucleotide binding|0000166||IEA,methionine-tRNA ligase activity|0004825||IEA,ATP binding|0005524||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304414.1;locus_tag=LPH39_RS02925;product=methionine--tRNA ligase;protein_id=WP_038270456.1;transl_table=11 NZ_CP087677.1 RefSeq gene 692954 693208 . - . ID=gene-LPH39_RS02930;Name=LPH39_RS02930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02930;old_locus_tag=LPH39_02930 NZ_CP087677.1 GeneMarkS-2+ CDS 692954 693208 . - 0 ID=cds-WP_152536574.1;Parent=gene-LPH39_RS02930;Dbxref=Genbank:WP_152536574.1;Name=WP_152536574.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02930;product=hypothetical protein;protein_id=WP_152536574.1;transl_table=11 NZ_CP087677.1 RefSeq gene 694255 694674 . + . ID=gene-LPH39_RS02935;Name=rnfB;gbkey=Gene;gene=rnfB;gene_biotype=protein_coding;locus_tag=LPH39_RS02935;old_locus_tag=LPH39_02935 NZ_CP087677.1 Protein Homology CDS 694255 694674 . + 0 ID=cds-WP_038270455.1;Parent=gene-LPH39_RS02935;Dbxref=Genbank:WP_038270455.1;Name=WP_038270455.1;gbkey=CDS;gene=rnfB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088821.1;locus_tag=LPH39_RS02935;product=Rnf electron transport complex subunit RnfB;protein_id=WP_038270455.1;transl_table=11 NZ_CP087677.1 RefSeq gene 694804 694986 . + . ID=gene-LPH39_RS02940;Name=LPH39_RS02940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02940;old_locus_tag=LPH39_02940 NZ_CP087677.1 GeneMarkS-2+ CDS 694804 694986 . + 0 ID=cds-WP_171898057.1;Parent=gene-LPH39_RS02940;Dbxref=Genbank:WP_171898057.1;Name=WP_171898057.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02940;product=hypothetical protein;protein_id=WP_171898057.1;transl_table=11 NZ_CP087677.1 RefSeq gene 696381 696764 . - . ID=gene-LPH39_RS02945;Name=LPH39_RS02945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02945;old_locus_tag=LPH39_02945 NZ_CP087677.1 GeneMarkS-2+ CDS 696381 696764 . - 0 ID=cds-WP_051482252.1;Parent=gene-LPH39_RS02945;Dbxref=Genbank:WP_051482252.1;Name=WP_051482252.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02945;product=hypothetical protein;protein_id=WP_051482252.1;transl_table=11 NZ_CP087677.1 RefSeq gene 697036 697188 . - . ID=gene-LPH39_RS02950;Name=LPH39_RS02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02950;old_locus_tag=LPH39_02950 NZ_CP087677.1 GeneMarkS-2+ CDS 697036 697188 . - 0 ID=cds-WP_114867175.1;Parent=gene-LPH39_RS02950;Dbxref=Genbank:WP_114867175.1;Name=WP_114867175.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02950;product=hypothetical protein;protein_id=WP_114867175.1;transl_table=11 NZ_CP087677.1 RefSeq gene 697891 698097 . - . ID=gene-LPH39_RS02955;Name=LPH39_RS02955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02955;old_locus_tag=LPH39_02955 NZ_CP087677.1 GeneMarkS-2+ CDS 697891 698097 . - 0 ID=cds-WP_160165120.1;Parent=gene-LPH39_RS02955;Dbxref=Genbank:WP_160165120.1;Name=WP_160165120.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02955;product=hypothetical protein;protein_id=WP_160165120.1;transl_table=11 NZ_CP087677.1 RefSeq gene 698149 698430 . + . ID=gene-LPH39_RS02960;Name=LPH39_RS02960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02960;old_locus_tag=LPH39_02960 NZ_CP087677.1 Protein Homology CDS 698149 698430 . + 0 ID=cds-WP_038270378.1;Parent=gene-LPH39_RS02960;Dbxref=Genbank:WP_038270378.1;Name=WP_038270378.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164775.1;locus_tag=LPH39_RS02960;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_038270378.1;transl_table=11 NZ_CP087677.1 RefSeq gene 698499 699698 . - . ID=gene-LPH39_RS02965;Name=LPH39_RS02965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02965;old_locus_tag=LPH39_02965 NZ_CP087677.1 Protein Homology CDS 698499 699698 . - 0 ID=cds-WP_230428506.1;Parent=gene-LPH39_RS02965;Dbxref=Genbank:WP_230428506.1;Name=WP_230428506.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607328.1;locus_tag=LPH39_RS02965;product=alpha/beta hydrolase;protein_id=WP_230428506.1;transl_table=11 NZ_CP087677.1 RefSeq gene 700486 700869 . - . ID=gene-LPH39_RS02970;Name=LPH39_RS02970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02970;old_locus_tag=LPH39_02970 NZ_CP087677.1 Protein Homology CDS 700486 700869 . - 0 ID=cds-WP_038270376.1;Parent=gene-LPH39_RS02970;Dbxref=Genbank:WP_038270376.1;Name=WP_038270376.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852211.1;locus_tag=LPH39_RS02970;product=hypothetical protein;protein_id=WP_038270376.1;transl_table=11 NZ_CP087677.1 RefSeq gene 700943 701233 . - . ID=gene-LPH39_RS02975;Name=LPH39_RS02975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02975;old_locus_tag=LPH39_02975 NZ_CP087677.1 Protein Homology CDS 700943 701233 . - 0 ID=cds-WP_051482251.1;Parent=gene-LPH39_RS02975;Dbxref=Genbank:WP_051482251.1;Name=WP_051482251.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023857.2;locus_tag=LPH39_RS02975;product=BrnA antitoxin family protein;protein_id=WP_051482251.1;transl_table=11 NZ_CP087677.1 RefSeq gene 701403 702713 . - . ID=gene-LPH39_RS02980;Name=LPH39_RS02980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02980;old_locus_tag=LPH39_02980 NZ_CP087677.1 Protein Homology CDS 701403 702713 . - 0 ID=cds-WP_038270375.1;Parent=gene-LPH39_RS02980;Dbxref=Genbank:WP_038270375.1;Name=WP_038270375.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013696.2;locus_tag=LPH39_RS02980;product=M20 family metallopeptidase;protein_id=WP_038270375.1;transl_table=11 NZ_CP087677.1 RefSeq gene 702896 703021 . - . ID=gene-LPH39_RS11975;Name=LPH39_RS11975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11975 NZ_CP087677.1 GeneMarkS-2+ CDS 702896 703021 . - 0 ID=cds-WP_267903158.1;Parent=gene-LPH39_RS11975;Dbxref=Genbank:WP_267903158.1;Name=WP_267903158.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11975;product=hypothetical protein;protein_id=WP_267903158.1;transl_table=11 NZ_CP087677.1 RefSeq gene 703036 703284 . - . ID=gene-LPH39_RS02985;Name=LPH39_RS02985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02985;old_locus_tag=LPH39_02985 NZ_CP087677.1 Protein Homology CDS 703036 703284 . - 0 ID=cds-WP_114867176.1;Parent=gene-LPH39_RS02985;Dbxref=Genbank:WP_114867176.1;Name=WP_114867176.1;Ontology_term=GO:0004252,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;inference=COORDINATES: protein motif:HMM:NF013827.2;locus_tag=LPH39_RS02985;product=rhomboid family intramembrane serine protease;protein_id=WP_114867176.1;transl_table=11 NZ_CP087677.1 RefSeq gene 703281 703523 . - . ID=gene-LPH39_RS02990;Name=LPH39_RS02990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS02990;old_locus_tag=LPH39_02990 NZ_CP087677.1 GeneMarkS-2+ CDS 703281 703523 . - 0 ID=cds-WP_152536573.1;Parent=gene-LPH39_RS02990;Dbxref=Genbank:WP_152536573.1;Name=WP_152536573.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS02990;product=hypothetical protein;protein_id=WP_152536573.1;transl_table=11 NZ_CP087677.1 RefSeq gene 703858 703934 . - . ID=gene-LPH39_RS02995;Name=LPH39_RS02995;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS02995;old_locus_tag=LPH39_02995 NZ_CP087677.1 tRNAscan-SE tRNA 703858 703934 . - . ID=rna-LPH39_RS02995;Parent=gene-LPH39_RS02995;anticodon=(pos:complement(703898..703900));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS02995;product=tRNA-Asn NZ_CP087677.1 tRNAscan-SE exon 703858 703934 . - . ID=exon-LPH39_RS02995-1;Parent=rna-LPH39_RS02995;anticodon=(pos:complement(703898..703900));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS02995;product=tRNA-Asn NZ_CP087677.1 RefSeq gene 704039 704440 . - . ID=gene-LPH39_RS03000;Name=LPH39_RS03000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03000;old_locus_tag=LPH39_03000 NZ_CP087677.1 Protein Homology CDS 704039 704440 . - 0 ID=cds-WP_200866181.1;Parent=gene-LPH39_RS03000;Dbxref=Genbank:WP_200866181.1;Name=WP_200866181.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382713.1;locus_tag=LPH39_RS03000;product=type IV pilin protein;protein_id=WP_200866181.1;transl_table=11 NZ_CP087677.1 RefSeq gene 704491 709056 . - . ID=gene-LPH39_RS03005;Name=LPH39_RS03005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03005;old_locus_tag=LPH39_03005 NZ_CP087677.1 Protein Homology CDS 704491 709056 . - 0 ID=cds-WP_038270373.1;Parent=gene-LPH39_RS03005;Dbxref=Genbank:WP_038270373.1;Name=WP_038270373.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338034.1;locus_tag=LPH39_RS03005;product=pilus assembly protein;protein_id=WP_038270373.1;transl_table=11 NZ_CP087677.1 RefSeq gene 709060 709551 . - . ID=gene-LPH39_RS03010;Name=LPH39_RS03010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03010;old_locus_tag=LPH39_03010 NZ_CP087677.1 Protein Homology CDS 709060 709551 . - 0 ID=cds-WP_230428235.1;Parent=gene-LPH39_RS03010;Dbxref=Genbank:WP_230428235.1;Name=WP_230428235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089766.1;locus_tag=LPH39_RS03010;product=PilX N-terminal domain-containing pilus assembly protein;protein_id=WP_230428235.1;transl_table=11 NZ_CP087677.1 RefSeq gene 709554 710810 . - . ID=gene-LPH39_RS03015;Name=LPH39_RS03015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03015;old_locus_tag=LPH39_03015 NZ_CP087677.1 Protein Homology CDS 709554 710810 . - 0 ID=cds-WP_038270371.1;Parent=gene-LPH39_RS03015;Dbxref=Genbank:WP_038270371.1;Name=WP_038270371.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851179.1;locus_tag=LPH39_RS03015;product=PilW family protein;protein_id=WP_038270371.1;transl_table=11 NZ_CP087677.1 RefSeq gene 710807 711253 . - . ID=gene-LPH39_RS03020;Name=pilV;gbkey=Gene;gene=pilV;gene_biotype=protein_coding;locus_tag=LPH39_RS03020;old_locus_tag=LPH39_03020 NZ_CP087677.1 Protein Homology CDS 710807 711253 . - 0 ID=cds-WP_230428236.1;Parent=gene-LPH39_RS03020;Dbxref=Genbank:WP_230428236.1;Name=WP_230428236.1;gbkey=CDS;gene=pilV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914248.1;locus_tag=LPH39_RS03020;product=type IV pilus modification protein PilV;protein_id=WP_230428236.1;transl_table=11 NZ_CP087677.1 RefSeq gene 711286 711798 . - . ID=gene-LPH39_RS03025;Name=LPH39_RS03025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03025;old_locus_tag=LPH39_03025 NZ_CP087677.1 Protein Homology CDS 711286 711798 . - 0 ID=cds-WP_038270369.1;Parent=gene-LPH39_RS03025;Dbxref=Genbank:WP_038270369.1;Name=WP_038270369.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851181.1;locus_tag=LPH39_RS03025;product=Tfp pilus assembly protein FimT/FimU;protein_id=WP_038270369.1;transl_table=11 NZ_CP087677.1 RefSeq gene 711943 713316 . - . ID=gene-LPH39_RS03030;Name=ppnN;gbkey=Gene;gene=ppnN;gene_biotype=protein_coding;locus_tag=LPH39_RS03030;old_locus_tag=LPH39_03030 NZ_CP087677.1 Protein Homology CDS 711943 713316 . - 0 ID=cds-WP_038270452.1;Parent=gene-LPH39_RS03030;Dbxref=Genbank:WP_038270452.1;Name=WP_038270452.1;gbkey=CDS;gene=ppnN;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083569.1;locus_tag=LPH39_RS03030;product=nucleotide 5'-monophosphate nucleosidase PpnN;protein_id=WP_038270452.1;transl_table=11 NZ_CP087677.1 RefSeq gene 714817 716373 . - . ID=gene-LPH39_RS03035;Name=LPH39_RS03035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03035;old_locus_tag=LPH39_03035 NZ_CP087677.1 Protein Homology CDS 714817 716373 . - 0 ID=cds-WP_038270368.1;Parent=gene-LPH39_RS03035;Dbxref=Genbank:WP_038270368.1;Name=WP_038270368.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098186.1;locus_tag=LPH39_RS03035;product=EAL domain-containing protein;protein_id=WP_038270368.1;transl_table=11 NZ_CP087677.1 RefSeq gene 719560 719706 . + . ID=gene-LPH39_RS03040;Name=LPH39_RS03040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03040;old_locus_tag=LPH39_03040 NZ_CP087677.1 GeneMarkS-2+ CDS 719560 719706 . + 0 ID=cds-WP_152536571.1;Parent=gene-LPH39_RS03040;Dbxref=Genbank:WP_152536571.1;Name=WP_152536571.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03040;product=AlpA family phage regulatory protein;protein_id=WP_152536571.1;transl_table=11 NZ_CP087677.1 RefSeq gene 720396 721535 . + . ID=gene-LPH39_RS03045;Name=moeB;gbkey=Gene;gene=moeB;gene_biotype=protein_coding;locus_tag=LPH39_RS03045;old_locus_tag=LPH39_03045 NZ_CP087677.1 Protein Homology CDS 720396 721535 . + 0 ID=cds-WP_038270362.1;Parent=gene-LPH39_RS03045;Dbxref=Genbank:WP_038270362.1;Name=WP_038270362.1;gbkey=CDS;gene=moeB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851185.1;locus_tag=LPH39_RS03045;product=molybdopterin-synthase adenylyltransferase MoeB;protein_id=WP_038270362.1;transl_table=11 NZ_CP087677.1 RefSeq gene 721756 723156 . - . ID=gene-LPH39_RS03050;Name=der;gbkey=Gene;gene=der;gene_biotype=protein_coding;locus_tag=LPH39_RS03050;old_locus_tag=LPH39_03050 NZ_CP087677.1 Protein Homology CDS 721756 723156 . - 0 ID=cds-WP_038270360.1;Parent=gene-LPH39_RS03050;Dbxref=Genbank:WP_038270360.1;Name=WP_038270360.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=der;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014160877.1;locus_tag=LPH39_RS03050;product=ribosome biogenesis GTPase Der;protein_id=WP_038270360.1;transl_table=11 NZ_CP087677.1 RefSeq gene 723174 724397 . - . ID=gene-LPH39_RS03055;Name=bamB;gbkey=Gene;gene=bamB;gene_biotype=protein_coding;locus_tag=LPH39_RS03055;old_locus_tag=LPH39_03055 NZ_CP087677.1 Protein Homology CDS 723174 724397 . - 0 ID=cds-WP_038270359.1;Parent=gene-LPH39_RS03055;Dbxref=Genbank:WP_038270359.1;Name=WP_038270359.1;Ontology_term=GO:0005515,GO:0009279;gbkey=CDS;gene=bamB;go_component=cell outer membrane|0009279||IEA;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083573.1;locus_tag=LPH39_RS03055;product=outer membrane protein assembly factor BamB;protein_id=WP_038270359.1;transl_table=11 NZ_CP087677.1 RefSeq gene 724398 725036 . - . ID=gene-LPH39_RS03060;Name=LPH39_RS03060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03060;old_locus_tag=LPH39_03060 NZ_CP087677.1 Protein Homology CDS 724398 725036 . - 0 ID=cds-WP_038270358.1;Parent=gene-LPH39_RS03060;Dbxref=Genbank:WP_038270358.1;Name=WP_038270358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503367.1;locus_tag=LPH39_RS03060;product=YfgM family protein;protein_id=WP_038270358.1;transl_table=11 NZ_CP087677.1 RefSeq gene 725113 725979 . - . ID=gene-LPH39_RS03065;Name=LPH39_RS03065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03065;old_locus_tag=LPH39_03065 NZ_CP087677.1 Protein Homology CDS 725113 725979 . - 0 ID=cds-WP_051482248.1;Parent=gene-LPH39_RS03065;Dbxref=Genbank:WP_051482248.1;Name=WP_051482248.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083575.1;locus_tag=LPH39_RS03065;product=helix-turn-helix domain-containing protein;protein_id=WP_051482248.1;transl_table=11 NZ_CP087677.1 RefSeq gene 725986 726792 . - . ID=gene-LPH39_RS03070;Name=pilW;gbkey=Gene;gene=pilW;gene_biotype=protein_coding;locus_tag=LPH39_RS03070;old_locus_tag=LPH39_03070 NZ_CP087677.1 Protein Homology CDS 725986 726792 . - 0 ID=cds-WP_038270357.1;Parent=gene-LPH39_RS03070;Dbxref=Genbank:WP_038270357.1;Name=WP_038270357.1;Ontology_term=GO:0005515;gbkey=CDS;gene=pilW;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083576.1;locus_tag=LPH39_RS03070;product=type IV pilus biogenesis/stability protein PilW;protein_id=WP_038270357.1;transl_table=11 NZ_CP087677.1 RefSeq gene 726779 727993 . - . ID=gene-LPH39_RS03075;Name=rlmN;gbkey=Gene;gene=rlmN;gene_biotype=protein_coding;locus_tag=LPH39_RS03075;old_locus_tag=LPH39_03075 NZ_CP087677.1 Protein Homology CDS 726779 727993 . - 0 ID=cds-WP_038270356.1;Parent=gene-LPH39_RS03075;Dbxref=Genbank:WP_038270356.1;Name=WP_038270356.1;Ontology_term=GO:0031167,GO:0008757,GO:0016433;gbkey=CDS;gene=rlmN;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,rRNA (adenine) methyltransferase activity|0016433||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089782.1;locus_tag=LPH39_RS03075;product=23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN;protein_id=WP_038270356.1;transl_table=11 NZ_CP087677.1 RefSeq gene 728004 728429 . - . ID=gene-LPH39_RS03080;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=LPH39_RS03080;old_locus_tag=LPH39_03080 NZ_CP087677.1 Protein Homology CDS 728004 728429 . - 0 ID=cds-WP_038270355.1;Parent=gene-LPH39_RS03080;Dbxref=Genbank:WP_038270355.1;Name=WP_038270355.1;Ontology_term=GO:0006165,GO:0004550;gbkey=CDS;gene=ndk;go_function=nucleoside diphosphate kinase activity|0004550||IEA;go_process=nucleoside diphosphate phosphorylation|0006165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005409295.1;locus_tag=LPH39_RS03080;product=nucleoside-diphosphate kinase;protein_id=WP_038270355.1;transl_table=11 NZ_CP087677.1 RefSeq gene 731678 732682 . + . ID=gene-LPH39_RS03085;Name=gap;gbkey=Gene;gene=gap;gene_biotype=protein_coding;locus_tag=LPH39_RS03085;old_locus_tag=LPH39_03085 NZ_CP087677.1 Protein Homology CDS 731678 732682 . + 0 ID=cds-WP_038270354.1;Parent=gene-LPH39_RS03085;Dbxref=Genbank:WP_038270354.1;Name=WP_038270354.1;Ontology_term=GO:0006094,GO:0006096,GO:0019682;gbkey=CDS;gene=gap;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA,glyceraldehyde-3-phosphate metabolic process|0019682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851191.1;locus_tag=LPH39_RS03085;product=type I glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_038270354.1;transl_table=11 NZ_CP087677.1 RefSeq gene 733568 734860 . - . ID=gene-LPH39_RS03090;Name=LPH39_RS03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03090;old_locus_tag=LPH39_03090 NZ_CP087677.1 Protein Homology CDS 733568 734860 . - 0 ID=cds-WP_038270352.1;Parent=gene-LPH39_RS03090;Dbxref=Genbank:WP_038270352.1;Name=WP_038270352.1;Ontology_term=GO:0006164,GO:0004019,GO:0005525;gbkey=CDS;go_function=adenylosuccinate synthase activity|0004019||IEA,GTP binding|0005525||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903917.1;locus_tag=LPH39_RS03090;product=adenylosuccinate synthase;protein_id=WP_038270352.1;transl_table=11 NZ_CP087677.1 RefSeq gene 735084 735269 . - . ID=gene-LPH39_RS03095;Name=LPH39_RS03095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03095;old_locus_tag=LPH39_03095 NZ_CP087677.1 Protein Homology CDS 735084 735269 . - 0 ID=cds-WP_038270351.1;Parent=gene-LPH39_RS03095;Dbxref=Genbank:WP_038270351.1;Name=WP_038270351.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089787.1;locus_tag=LPH39_RS03095;product=DUF2065 family protein;protein_id=WP_038270351.1;transl_table=11 NZ_CP087677.1 RefSeq gene 735426 736289 . - . ID=gene-LPH39_RS03100;Name=LPH39_RS03100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03100;old_locus_tag=LPH39_03100 NZ_CP087677.1 Protein Homology CDS 735426 736289 . - 0 ID=cds-WP_038270350.1;Parent=gene-LPH39_RS03100;Dbxref=Genbank:WP_038270350.1;Name=WP_038270350.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083581.1;locus_tag=LPH39_RS03100;product=protease modulator HflC;protein_id=WP_038270350.1;transl_table=11 NZ_CP087677.1 RefSeq gene 736286 737425 . - . ID=gene-LPH39_RS03105;Name=hflK;gbkey=Gene;gene=hflK;gene_biotype=protein_coding;locus_tag=LPH39_RS03105;old_locus_tag=LPH39_03105 NZ_CP087677.1 Protein Homology CDS 736286 737425 . - 0 ID=cds-WP_038270349.1;Parent=gene-LPH39_RS03105;Dbxref=Genbank:WP_038270349.1;Name=WP_038270349.1;Ontology_term=GO:0045861,GO:0003674,GO:0030288;gbkey=CDS;gene=hflK;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=molecular_function|0003674||IEA;go_process=negative regulation of proteolysis|0045861||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851193.1;locus_tag=LPH39_RS03105;product=FtsH protease activity modulator HflK;protein_id=WP_038270349.1;transl_table=11 NZ_CP087677.1 RefSeq gene 737556 738566 . + . ID=gene-LPH39_RS03110;Name=LPH39_RS03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03110;old_locus_tag=LPH39_03110 NZ_CP087677.1 Protein Homology CDS 737556 738566 . + 0 ID=cds-WP_038270348.1;Parent=gene-LPH39_RS03110;Dbxref=Genbank:WP_038270348.1;Name=WP_038270348.1;Ontology_term=GO:0008152,GO:0016655;gbkey=CDS;go_function=oxidoreductase activity%2C acting on NAD(P)H%2C quinone or similar compound as acceptor|0016655||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005418337.1;locus_tag=LPH39_RS03110;product=acryloyl-CoA reductase;protein_id=WP_038270348.1;transl_table=11 NZ_CP087677.1 RefSeq gene 738659 739045 . + . ID=gene-LPH39_RS03115;Name=pilH;gbkey=Gene;gene=pilH;gene_biotype=protein_coding;locus_tag=LPH39_RS03115;old_locus_tag=LPH39_03115 NZ_CP087677.1 Protein Homology CDS 738659 739045 . + 0 ID=cds-WP_038270450.1;Parent=gene-LPH39_RS03115;Dbxref=Genbank:WP_038270450.1;Name=WP_038270450.1;gbkey=CDS;gene=pilH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083584.1;locus_tag=LPH39_RS03115;product=twitching motility response regulator PilH;protein_id=WP_038270450.1;transl_table=11 NZ_CP087677.1 RefSeq gene 740381 740731 . - . ID=gene-LPH39_RS03120;Name=LPH39_RS03120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03120;old_locus_tag=LPH39_03120 NZ_CP087677.1 Protein Homology CDS 740381 740731 . - 0 ID=cds-WP_038270449.1;Parent=gene-LPH39_RS03120;Dbxref=Genbank:WP_038270449.1;Name=WP_038270449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083585.1;locus_tag=LPH39_RS03120;product=DMT family protein;protein_id=WP_038270449.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 741985 742356 . - . ID=gene-LPH39_RS03125;Name=LPH39_RS03125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS03125;old_locus_tag=LPH39_03125;partial=true;pseudo=true;start_range=.,741985 NZ_CP087677.1 Protein Homology CDS 741985 742356 . - 0 ID=cds-LPH39_RS03125;Parent=gene-LPH39_RS03125;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970417.1;locus_tag=LPH39_RS03125;partial=true;product=H-NS family nucleoid-associated regulatory protein;pseudo=true;start_range=.,741985;transl_table=11 NZ_CP087677.1 RefSeq gene 742505 744199 . - . ID=gene-LPH39_RS03130;Name=LPH39_RS03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03130;old_locus_tag=LPH39_03130 NZ_CP087677.1 Protein Homology CDS 742505 744199 . - 0 ID=cds-WP_038270346.1;Parent=gene-LPH39_RS03130;Dbxref=Genbank:WP_038270346.1;Name=WP_038270346.1;Ontology_term=GO:0006418,GO:0006433,GO:0000166,GO:0002161,GO:0004812,GO:0004827,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA editing activity|0002161||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,proline-tRNA ligase activity|0004827||IEA,ATP binding|0005524||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA,prolyl-tRNA aminoacylation|0006433||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157647.1;locus_tag=LPH39_RS03130;product=proline--tRNA ligase;protein_id=WP_038270346.1;transl_table=11 NZ_CP087677.1 RefSeq gene 744292 744663 . - . ID=gene-LPH39_RS03135;Name=LPH39_RS03135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03135;old_locus_tag=LPH39_03135 NZ_CP087677.1 Protein Homology CDS 744292 744663 . - 0 ID=cds-WP_038270345.1;Parent=gene-LPH39_RS03135;Dbxref=Genbank:WP_038270345.1;Name=WP_038270345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851197.1;locus_tag=LPH39_RS03135;product=DUF4124 domain-containing protein;protein_id=WP_038270345.1;transl_table=11 NZ_CP087677.1 RefSeq gene 744824 745594 . + . ID=gene-LPH39_RS03140;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=LPH39_RS03140;old_locus_tag=LPH39_03140 NZ_CP087677.1 Protein Homology CDS 744824 745594 . + 0 ID=cds-WP_038270343.1;Parent=gene-LPH39_RS03140;Dbxref=Genbank:WP_038270343.1;Name=WP_038270343.1;Ontology_term=GO:0008654,GO:0003882;gbkey=CDS;gene=pssA;go_function=CDP-diacylglycerol-serine O-phosphatidyltransferase activity|0003882||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083589.1;locus_tag=LPH39_RS03140;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=WP_038270343.1;transl_table=11 NZ_CP087677.1 RefSeq gene 745603 746016 . + . ID=gene-LPH39_RS03145;Name=LPH39_RS03145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03145;old_locus_tag=LPH39_03145 NZ_CP087677.1 Protein Homology CDS 745603 746016 . + 0 ID=cds-WP_230428240.1;Parent=gene-LPH39_RS03145;Dbxref=Genbank:WP_230428240.1;Name=WP_230428240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851198.1;locus_tag=LPH39_RS03145;product=hypothetical protein;protein_id=WP_230428240.1;transl_table=11 NZ_CP087677.1 RefSeq gene 746017 746487 . + . ID=gene-LPH39_RS03150;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=LPH39_RS03150;old_locus_tag=LPH39_03150 NZ_CP087677.1 Protein Homology CDS 746017 746487 . + 0 ID=cds-WP_038270341.1;Parent=gene-LPH39_RS03150;Dbxref=Genbank:WP_038270341.1;Name=WP_038270341.1;Ontology_term=GO:0036211,GO:0042254,GO:0008999;gbkey=CDS;gene=rimI;go_function=peptide-alanine-alpha-N-acetyltransferase activity|0008999||IEA;go_process=protein modification process|0036211||IEA,ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089802.1;locus_tag=LPH39_RS03150;product=ribosomal protein S18-alanine N-acetyltransferase;protein_id=WP_038270341.1;transl_table=11 NZ_CP087677.1 RefSeq gene 747710 748108 . - . ID=gene-LPH39_RS03155;Name=LPH39_RS03155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03155;old_locus_tag=LPH39_03155 NZ_CP087677.1 GeneMarkS-2+ CDS 747710 748108 . - 0 ID=cds-WP_038270340.1;Parent=gene-LPH39_RS03155;Dbxref=Genbank:WP_038270340.1;Name=WP_038270340.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03155;product=hypothetical protein;protein_id=WP_038270340.1;transl_table=11 NZ_CP087677.1 RefSeq gene 748628 748843 . - . ID=gene-LPH39_RS03160;Name=LPH39_RS03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03160;old_locus_tag=LPH39_03160 NZ_CP087677.1 GeneMarkS-2+ CDS 748628 748843 . - 0 ID=cds-WP_152536570.1;Parent=gene-LPH39_RS03160;Dbxref=Genbank:WP_152536570.1;Name=WP_152536570.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03160;product=hypothetical protein;protein_id=WP_152536570.1;transl_table=11 NZ_CP087677.1 RefSeq gene 749086 751260 . - . ID=gene-LPH39_RS03165;Name=LPH39_RS03165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03165;old_locus_tag=LPH39_03165 NZ_CP087677.1 Protein Homology CDS 749086 751260 . - 0 ID=cds-WP_038270448.1;Parent=gene-LPH39_RS03165;Dbxref=Genbank:WP_038270448.1;Name=WP_038270448.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083592.1;locus_tag=LPH39_RS03165;product=glycoside hydrolase family 3 C-terminal domain-containing protein;protein_id=WP_038270448.1;transl_table=11 NZ_CP087677.1 RefSeq gene 751821 753116 . - . ID=gene-LPH39_RS03170;Name=LPH39_RS03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03170;old_locus_tag=LPH39_03170 NZ_CP087677.1 Protein Homology CDS 751821 753116 . - 0 ID=cds-WP_051482247.1;Parent=gene-LPH39_RS03170;Dbxref=Genbank:WP_051482247.1;Name=WP_051482247.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083593.1;locus_tag=LPH39_RS03170;product=mechanosensitive ion channel family protein;protein_id=WP_051482247.1;transl_table=11 NZ_CP087677.1 RefSeq gene 753350 753712 . - . ID=gene-LPH39_RS03175;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=LPH39_RS03175;old_locus_tag=LPH39_03175 NZ_CP087677.1 Protein Homology CDS 753350 753712 . - 0 ID=cds-WP_038270338.1;Parent=gene-LPH39_RS03175;Dbxref=Genbank:WP_038270338.1;Name=WP_038270338.1;Ontology_term=GO:0006760,GO:0004150;gbkey=CDS;gene=folB;go_function=dihydroneopterin aldolase activity|0004150||IEA;go_process=folic acid-containing compound metabolic process|0006760||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996916.1;locus_tag=LPH39_RS03175;product=dihydroneopterin aldolase;protein_id=WP_038270338.1;transl_table=11 NZ_CP087677.1 RefSeq gene 753786 754841 . - . ID=gene-LPH39_RS03180;Name=tsaD;gbkey=Gene;gene=tsaD;gene_biotype=protein_coding;locus_tag=LPH39_RS03180;old_locus_tag=LPH39_03180 NZ_CP087677.1 Protein Homology CDS 753786 754841 . - 0 ID=cds-WP_038270337.1;Parent=gene-LPH39_RS03180;Dbxref=Genbank:WP_038270337.1;Name=WP_038270337.1;Ontology_term=GO:0006400;gbkey=CDS;gene=tsaD;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083595.1;locus_tag=LPH39_RS03180;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=WP_038270337.1;transl_table=11 NZ_CP087677.1 RefSeq gene 755013 755228 . + . ID=gene-LPH39_RS03185;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=LPH39_RS03185;old_locus_tag=LPH39_03185 NZ_CP087677.1 Protein Homology CDS 755013 755228 . + 0 ID=cds-WP_038270336.1;Parent=gene-LPH39_RS03185;Dbxref=Genbank:WP_038270336.1;Name=WP_038270336.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsU;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011235429.1;locus_tag=LPH39_RS03185;product=30S ribosomal protein S21;protein_id=WP_038270336.1;transl_table=11 NZ_CP087677.1 RefSeq gene 755424 755870 . + . ID=gene-LPH39_RS03190;Name=LPH39_RS03190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03190;old_locus_tag=LPH39_03190 NZ_CP087677.1 Protein Homology CDS 755424 755870 . + 0 ID=cds-WP_038270335.1;Parent=gene-LPH39_RS03190;Dbxref=Genbank:WP_038270335.1;Name=WP_038270335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038898.1;locus_tag=LPH39_RS03190;product=GatB/YqeY domain-containing protein;protein_id=WP_038270335.1;transl_table=11 NZ_CP087677.1 RefSeq gene 756125 757054 . + . ID=gene-LPH39_RS03195;Name=LPH39_RS03195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03195;old_locus_tag=LPH39_03195 NZ_CP087677.1 Protein Homology CDS 756125 757054 . + 0 ID=cds-WP_230428241.1;Parent=gene-LPH39_RS03195;Dbxref=Genbank:WP_230428241.1;Name=WP_230428241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083598.1;locus_tag=LPH39_RS03195;product=YihY/virulence factor BrkB family protein;protein_id=WP_230428241.1;transl_table=11 NZ_CP087677.1 RefSeq gene 757272 759005 . + . ID=gene-LPH39_RS03200;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=LPH39_RS03200;old_locus_tag=LPH39_03200 NZ_CP087677.1 Protein Homology CDS 757272 759005 . + 0 ID=cds-WP_038270334.1;Parent=gene-LPH39_RS03200;Dbxref=Genbank:WP_038270334.1;Name=WP_038270334.1;Ontology_term=GO:0006269,GO:0003896;gbkey=CDS;gene=dnaG;go_function=DNA primase activity|0003896||IEA;go_process=DNA replication%2C synthesis of RNA primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083599.1;locus_tag=LPH39_RS03200;product=DNA primase;protein_id=WP_038270334.1;transl_table=11 NZ_CP087677.1 RefSeq gene 759114 759266 . - . ID=gene-LPH39_RS03205;Name=LPH39_RS03205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03205;old_locus_tag=LPH39_03205 NZ_CP087677.1 GeneMarkS-2+ CDS 759114 759266 . - 0 ID=cds-WP_160165119.1;Parent=gene-LPH39_RS03205;Dbxref=Genbank:WP_160165119.1;Name=WP_160165119.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03205;product=hypothetical protein;protein_id=WP_160165119.1;transl_table=11 NZ_CP087677.1 RefSeq gene 759651 760943 . - . ID=gene-LPH39_RS03210;Name=LPH39_RS03210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03210;old_locus_tag=LPH39_03210 NZ_CP087677.1 Protein Homology CDS 759651 760943 . - 0 ID=cds-WP_038270333.1;Parent=gene-LPH39_RS03210;Dbxref=Genbank:WP_038270333.1;Name=WP_038270333.1;Ontology_term=GO:0006436,GO:0004830;gbkey=CDS;go_function=tryptophan-tRNA ligase activity|0004830||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089825.1;locus_tag=LPH39_RS03210;product=tryptophan--tRNA ligase;protein_id=WP_038270333.1;transl_table=11 NZ_CP087677.1 RefSeq gene 761685 763616 . - . ID=gene-LPH39_RS03215;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=LPH39_RS03215;old_locus_tag=LPH39_03215 NZ_CP087677.1 Protein Homology CDS 761685 763616 . - 0 ID=cds-WP_038270331.1;Parent=gene-LPH39_RS03215;Dbxref=Genbank:WP_038270331.1;Name=WP_038270331.1;Ontology_term=GO:0006281,GO:0006310,GO:0008854,GO:0009338;gbkey=CDS;gene=recD;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851823.1;locus_tag=LPH39_RS03215;product=exodeoxyribonuclease V subunit alpha;protein_id=WP_038270331.1;transl_table=11 NZ_CP087677.1 RefSeq gene 763613 767347 . - . ID=gene-LPH39_RS03220;Name=LPH39_RS03220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03220;old_locus_tag=LPH39_03220 NZ_CP087677.1 Protein Homology CDS 763613 767347 . - 0 ID=cds-WP_160199304.1;Parent=gene-LPH39_RS03220;Dbxref=Genbank:WP_160199304.1;Name=WP_160199304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083603.1;locus_tag=LPH39_RS03220;product=exodeoxyribonuclease V subunit beta;protein_id=WP_160199304.1;transl_table=11 NZ_CP087677.1 RefSeq gene 767344 770694 . - . ID=gene-LPH39_RS03225;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=LPH39_RS03225;old_locus_tag=LPH39_03225 NZ_CP087677.1 Protein Homology CDS 767344 770694 . - 0 ID=cds-WP_038270568.1;Parent=gene-LPH39_RS03225;Dbxref=Genbank:WP_038270568.1;Name=WP_038270568.1;Ontology_term=GO:0006281,GO:0006310,GO:0008854,GO:0009338;gbkey=CDS;gene=recC;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851826.1;locus_tag=LPH39_RS03225;product=exodeoxyribonuclease V subunit gamma;protein_id=WP_038270568.1;transl_table=11 NZ_CP087677.1 RefSeq gene 770937 771731 . + . ID=gene-LPH39_RS03230;Name=LPH39_RS03230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03230;old_locus_tag=LPH39_03230 NZ_CP087677.1 Protein Homology CDS 770937 771731 . + 0 ID=cds-WP_038270567.1;Parent=gene-LPH39_RS03230;Dbxref=Genbank:WP_038270567.1;Name=WP_038270567.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089839.1;locus_tag=LPH39_RS03230;product=ABC transporter ATP-binding protein;protein_id=WP_038270567.1;transl_table=11 NZ_CP087677.1 RefSeq gene 771731 772480 . + . ID=gene-LPH39_RS03235;Name=LPH39_RS03235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03235;old_locus_tag=LPH39_03235 NZ_CP087677.1 Protein Homology CDS 771731 772480 . + 0 ID=cds-WP_038270565.1;Parent=gene-LPH39_RS03235;Dbxref=Genbank:WP_038270565.1;Name=WP_038270565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302478.1;locus_tag=LPH39_RS03235;product=MlaE family lipid ABC transporter permease subunit;protein_id=WP_038270565.1;transl_table=11 NZ_CP087677.1 RefSeq gene 772605 773141 . + . ID=gene-LPH39_RS03240;Name=mlaD;gbkey=Gene;gene=mlaD;gene_biotype=protein_coding;locus_tag=LPH39_RS03240;old_locus_tag=LPH39_03240 NZ_CP087677.1 Protein Homology CDS 772605 773141 . + 0 ID=cds-WP_038270564.1;Parent=gene-LPH39_RS03240;Dbxref=Genbank:WP_038270564.1;Name=WP_038270564.1;Ontology_term=GO:0015914;gbkey=CDS;gene=mlaD;go_process=phospholipid transport|0015914||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851827.1;locus_tag=LPH39_RS03240;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_038270564.1;transl_table=11 NZ_CP087677.1 RefSeq gene 773138 773794 . + . ID=gene-LPH39_RS03245;Name=LPH39_RS03245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03245;old_locus_tag=LPH39_03245 NZ_CP087677.1 Protein Homology CDS 773138 773794 . + 0 ID=cds-WP_038270563.1;Parent=gene-LPH39_RS03245;Dbxref=Genbank:WP_038270563.1;Name=WP_038270563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851828.1;locus_tag=LPH39_RS03245;product=phospholipid-binding protein MlaC;protein_id=WP_038270563.1;transl_table=11 NZ_CP087677.1 RefSeq gene 773784 774086 . + . ID=gene-LPH39_RS03250;Name=LPH39_RS03250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03250;old_locus_tag=LPH39_03250 NZ_CP087677.1 Protein Homology CDS 773784 774086 . + 0 ID=cds-WP_038270562.1;Parent=gene-LPH39_RS03250;Dbxref=Genbank:WP_038270562.1;Name=WP_038270562.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083609.1;locus_tag=LPH39_RS03250;product=lipid asymmetry maintenance protein MlaB;protein_id=WP_038270562.1;transl_table=11 NZ_CP087677.1 RefSeq gene 774101 775135 . + . ID=gene-LPH39_RS03255;Name=LPH39_RS03255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03255;old_locus_tag=LPH39_03255 NZ_CP087677.1 Protein Homology CDS 774101 775135 . + 0 ID=cds-WP_038270561.1;Parent=gene-LPH39_RS03255;Dbxref=Genbank:WP_038270561.1;Name=WP_038270561.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089845.1;locus_tag=LPH39_RS03255;product=VacJ family lipoprotein;protein_id=WP_038270561.1;transl_table=11 NZ_CP087677.1 RefSeq gene 775864 777234 . - . ID=gene-LPH39_RS03260;Name=LPH39_RS03260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03260;old_locus_tag=LPH39_03260 NZ_CP087677.1 Protein Homology CDS 775864 777234 . - 0 ID=cds-WP_038270560.1;Parent=gene-LPH39_RS03260;Dbxref=Genbank:WP_038270560.1;Name=WP_038270560.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851830.1;locus_tag=LPH39_RS03260;product=DNA recombination protein RmuC;protein_id=WP_038270560.1;transl_table=11 NZ_CP087677.1 RefSeq gene 777614 778915 . - . ID=gene-LPH39_RS03265;Name=LPH39_RS03265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03265;old_locus_tag=LPH39_03265 NZ_CP087677.1 Protein Homology CDS 777614 778915 . - 0 ID=cds-WP_038270559.1;Parent=gene-LPH39_RS03265;Dbxref=Genbank:WP_038270559.1;Name=WP_038270559.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892942.1;locus_tag=LPH39_RS03265;product=AAA-associated domain-containing protein;protein_id=WP_038270559.1;transl_table=11 NZ_CP087677.1 RefSeq gene 778947 780704 . - . ID=gene-LPH39_RS03270;Name=LPH39_RS03270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03270;old_locus_tag=LPH39_03270 NZ_CP087677.1 Protein Homology CDS 778947 780704 . - 0 ID=cds-WP_038270558.1;Parent=gene-LPH39_RS03270;Dbxref=Genbank:WP_038270558.1;Name=WP_038270558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098200.1;locus_tag=LPH39_RS03270;product=ABC transporter permease subunit;protein_id=WP_038270558.1;transl_table=11 NZ_CP087677.1 RefSeq gene 780818 781015 . + . ID=gene-LPH39_RS03275;Name=LPH39_RS03275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03275;old_locus_tag=LPH39_03275 NZ_CP087677.1 GeneMarkS-2+ CDS 780818 781015 . + 0 ID=cds-WP_160165136.1;Parent=gene-LPH39_RS03275;Dbxref=Genbank:WP_160165136.1;Name=WP_160165136.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03275;product=hypothetical protein;protein_id=WP_160165136.1;transl_table=11 NZ_CP087677.1 RefSeq gene 781472 782905 . + . ID=gene-LPH39_RS03280;Name=LPH39_RS03280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03280;old_locus_tag=LPH39_03280 NZ_CP087677.1 Protein Homology CDS 781472 782905 . + 0 ID=cds-WP_038270582.1;Parent=gene-LPH39_RS03280;Dbxref=Genbank:WP_038270582.1;Name=WP_038270582.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892938.1;locus_tag=LPH39_RS03280;product=amino acid permease;protein_id=WP_038270582.1;transl_table=11 NZ_CP087677.1 RefSeq gene 782975 783169 . + . ID=gene-LPH39_RS03285;Name=LPH39_RS03285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03285;old_locus_tag=LPH39_03285 NZ_CP087677.1 GeneMarkS-2+ CDS 782975 783169 . + 0 ID=cds-WP_152536581.1;Parent=gene-LPH39_RS03285;Dbxref=Genbank:WP_152536581.1;Name=WP_152536581.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03285;product=hypothetical protein;protein_id=WP_152536581.1;transl_table=11 NZ_CP087677.1 RefSeq gene 783138 784307 . - . ID=gene-LPH39_RS03290;Name=LPH39_RS03290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03290;old_locus_tag=LPH39_03290 NZ_CP087677.1 Protein Homology CDS 783138 784307 . - 0 ID=cds-WP_038270556.1;Parent=gene-LPH39_RS03290;Dbxref=Genbank:WP_038270556.1;Name=WP_038270556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008264547.1;locus_tag=LPH39_RS03290;product=class I SAM-dependent rRNA methyltransferase;protein_id=WP_038270556.1;transl_table=11 NZ_CP087677.1 RefSeq gene 784580 785536 . + . ID=gene-LPH39_RS03295;Name=LPH39_RS03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03295;old_locus_tag=LPH39_03295 NZ_CP087677.1 Protein Homology CDS 784580 785536 . + 0 ID=cds-WP_038270555.1;Parent=gene-LPH39_RS03295;Dbxref=Genbank:WP_038270555.1;Name=WP_038270555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449013.1;locus_tag=LPH39_RS03295;product=TerC family protein;protein_id=WP_038270555.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 787066 788153 . - . ID=gene-LPH39_RS03300;Name=LPH39_RS03300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS03300;old_locus_tag=LPH39_03300;pseudo=true NZ_CP087677.1 Protein Homology CDS 787066 788153 . - 0 ID=cds-LPH39_RS03300;Parent=gene-LPH39_RS03300;Note=frameshifted%3B internal stop;Ontology_term=GO:0006629,GO:0008081;gbkey=CDS;go_function=phosphoric diester hydrolase activity|0008081||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091577.1;locus_tag=LPH39_RS03300;product=glycerophosphodiester phosphodiesterase family protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 788350 789978 . - . ID=gene-LPH39_RS03305;Name=LPH39_RS03305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS03305;old_locus_tag=LPH39_03305;pseudo=true NZ_CP087677.1 Protein Homology CDS 788350 789978 . - 0 ID=cds-LPH39_RS03305;Parent=gene-LPH39_RS03305;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019463570.1;locus_tag=LPH39_RS03305;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 790600 790986 . - . ID=gene-LPH39_RS03310;Name=erpA;gbkey=Gene;gene=erpA;gene_biotype=protein_coding;locus_tag=LPH39_RS03310;old_locus_tag=LPH39_03310 NZ_CP087677.1 Protein Homology CDS 790600 790986 . - 0 ID=cds-WP_038270552.1;Parent=gene-LPH39_RS03310;Dbxref=Genbank:WP_038270552.1;Name=WP_038270552.1;Ontology_term=GO:0016226,GO:0051536;gbkey=CDS;gene=erpA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411302.1;locus_tag=LPH39_RS03310;product=iron-sulfur cluster insertion protein ErpA;protein_id=WP_038270552.1;transl_table=11 NZ_CP087677.1 RefSeq gene 791020 791454 . - . ID=gene-LPH39_RS03315;Name=LPH39_RS03315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03315;old_locus_tag=LPH39_03315 NZ_CP087677.1 Protein Homology CDS 791020 791454 . - 0 ID=cds-WP_038270551.1;Parent=gene-LPH39_RS03315;Dbxref=Genbank:WP_038270551.1;Name=WP_038270551.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851837.1;locus_tag=LPH39_RS03315;product=polymer-forming cytoskeletal protein;protein_id=WP_038270551.1;transl_table=11 NZ_CP087677.1 RefSeq gene 791456 792133 . - . ID=gene-LPH39_RS03320;Name=LPH39_RS03320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03320;old_locus_tag=LPH39_03320 NZ_CP087677.1 Protein Homology CDS 791456 792133 . - 0 ID=cds-WP_230428298.1;Parent=gene-LPH39_RS03320;Dbxref=Genbank:WP_230428298.1;Name=WP_230428298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607439.1;locus_tag=LPH39_RS03320;product=hypothetical protein;protein_id=WP_230428298.1;transl_table=11 NZ_CP087677.1 RefSeq gene 793123 794781 . + . ID=gene-LPH39_RS03325;Name=LPH39_RS03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03325;old_locus_tag=LPH39_03325 NZ_CP087677.1 Protein Homology CDS 793123 794781 . + 0 ID=cds-WP_051482267.1;Parent=gene-LPH39_RS03325;Dbxref=Genbank:WP_051482267.1;Name=WP_051482267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382723.1;locus_tag=LPH39_RS03325;product=EAL domain-containing response regulator;protein_id=WP_051482267.1;transl_table=11 NZ_CP087677.1 RefSeq gene 795084 796031 . + . ID=gene-LPH39_RS03330;Name=LPH39_RS03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03330;old_locus_tag=LPH39_03330 NZ_CP087677.1 Protein Homology CDS 795084 796031 . + 0 ID=cds-WP_230428508.1;Parent=gene-LPH39_RS03330;Dbxref=Genbank:WP_230428508.1;Name=WP_230428508.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014567.2;locus_tag=LPH39_RS03330;product=ATP-binding protein;protein_id=WP_230428508.1;transl_table=11 NZ_CP087677.1 RefSeq gene 796091 797110 . + . ID=gene-LPH39_RS03335;Name=LPH39_RS03335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03335;old_locus_tag=LPH39_03335 NZ_CP087677.1 Protein Homology CDS 796091 797110 . + 0 ID=cds-WP_230428243.1;Parent=gene-LPH39_RS03335;Dbxref=Genbank:WP_230428243.1;Name=WP_230428243.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: protein motif:HMM:NF012301.2;locus_tag=LPH39_RS03335;product=response regulator;protein_id=WP_230428243.1;transl_table=11 NZ_CP087677.1 RefSeq gene 797112 797582 . - . ID=gene-LPH39_RS03340;Name=bfr;gbkey=Gene;gene=bfr;gene_biotype=protein_coding;locus_tag=LPH39_RS03340;old_locus_tag=LPH39_03340 NZ_CP087677.1 Protein Homology CDS 797112 797582 . - 0 ID=cds-WP_038270549.1;Parent=gene-LPH39_RS03340;Dbxref=Genbank:WP_038270549.1;Name=WP_038270549.1;Ontology_term=GO:0006880,GO:0004322,GO:0008199;gbkey=CDS;gene=bfr;go_function=ferroxidase activity|0004322||IEA,ferric iron binding|0008199||IEA;go_process=intracellular sequestering of iron ion|0006880||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808230.1;locus_tag=LPH39_RS03340;product=bacterioferritin;protein_id=WP_038270549.1;transl_table=11 NZ_CP087677.1 RefSeq gene 797664 797891 . - . ID=gene-LPH39_RS03345;Name=LPH39_RS03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03345;old_locus_tag=LPH39_03345 NZ_CP087677.1 Protein Homology CDS 797664 797891 . - 0 ID=cds-WP_171898093.1;Parent=gene-LPH39_RS03345;Dbxref=Genbank:WP_171898093.1;Name=WP_171898093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892924.1;locus_tag=LPH39_RS03345;product=(2Fe-2S)-binding protein;protein_id=WP_171898093.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 798036 798629 . - . ID=gene-LPH39_RS03350;Name=LPH39_RS03350;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS03350;old_locus_tag=LPH39_03350;pseudo=true NZ_CP087677.1 Protein Homology CDS 798036 798629 . - 0 ID=cds-LPH39_RS03350;Parent=gene-LPH39_RS03350;Note=frameshifted%3B internal stop;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083624.1;locus_tag=LPH39_RS03350;product=RNA pyrophosphohydrolase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 798675 798751 . + . ID=gene-LPH39_RS03355;Name=LPH39_RS03355;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS03355;old_locus_tag=LPH39_03355 NZ_CP087677.1 tRNAscan-SE tRNA 798675 798751 . + . ID=rna-LPH39_RS03355;Parent=gene-LPH39_RS03355;anticodon=(pos:798709..798711);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS03355;product=tRNA-Met NZ_CP087677.1 tRNAscan-SE exon 798675 798751 . + . ID=exon-LPH39_RS03355-1;Parent=rna-LPH39_RS03355;anticodon=(pos:798709..798711);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS03355;product=tRNA-Met NZ_CP087677.1 RefSeq gene 798805 798879 . + . ID=gene-LPH39_RS03360;Name=LPH39_RS03360;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS03360;old_locus_tag=LPH39_03360 NZ_CP087677.1 tRNAscan-SE tRNA 798805 798879 . + . ID=rna-LPH39_RS03360;Parent=gene-LPH39_RS03360;anticodon=(pos:798837..798839);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS03360;product=tRNA-Gln NZ_CP087677.1 tRNAscan-SE exon 798805 798879 . + . ID=exon-LPH39_RS03360-1;Parent=rna-LPH39_RS03360;anticodon=(pos:798837..798839);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS03360;product=tRNA-Gln NZ_CP087677.1 RefSeq gene 799418 800629 . - . ID=gene-LPH39_RS03365;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=LPH39_RS03365;old_locus_tag=LPH39_03365 NZ_CP087677.1 Protein Homology CDS 799418 800629 . - 0 ID=cds-WP_038270548.1;Parent=gene-LPH39_RS03365;Dbxref=Genbank:WP_038270548.1;Name=WP_038270548.1;Ontology_term=GO:0006556,GO:0004478;gbkey=CDS;gene=metK;go_function=methionine adenosyltransferase activity|0004478||IEA;go_process=S-adenosylmethionine biosynthetic process|0006556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083625.1;locus_tag=LPH39_RS03365;product=methionine adenosyltransferase;protein_id=WP_038270548.1;transl_table=11 NZ_CP087677.1 RefSeq gene 803011 803226 . - . ID=gene-LPH39_RS03370;Name=LPH39_RS03370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03370;old_locus_tag=LPH39_03370 NZ_CP087677.1 GeneMarkS-2+ CDS 803011 803226 . - 0 ID=cds-WP_038270546.1;Parent=gene-LPH39_RS03370;Dbxref=Genbank:WP_038270546.1;Name=WP_038270546.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03370;product=hypothetical protein;protein_id=WP_038270546.1;transl_table=11 NZ_CP087677.1 RefSeq gene 804257 805705 . - . ID=gene-LPH39_RS03375;Name=LPH39_RS03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03375;old_locus_tag=LPH39_03375 NZ_CP087677.1 Protein Homology CDS 804257 805705 . - 0 ID=cds-WP_051482260.1;Parent=gene-LPH39_RS03375;Dbxref=Genbank:WP_051482260.1;Name=WP_051482260.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852808.1;locus_tag=LPH39_RS03375;product=ATP-binding protein;protein_id=WP_051482260.1;transl_table=11 NZ_CP087677.1 RefSeq gene 805721 806404 . - . ID=gene-LPH39_RS03380;Name=LPH39_RS03380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03380;old_locus_tag=LPH39_03380 NZ_CP087677.1 Protein Homology CDS 805721 806404 . - 0 ID=cds-WP_038270544.1;Parent=gene-LPH39_RS03380;Dbxref=Genbank:WP_038270544.1;Name=WP_038270544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017917079.1;locus_tag=LPH39_RS03380;product=response regulator transcription factor;protein_id=WP_038270544.1;transl_table=11 NZ_CP087677.1 RefSeq gene 806495 806866 . - . ID=gene-LPH39_RS03385;Name=LPH39_RS03385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03385;old_locus_tag=LPH39_03385 NZ_CP087677.1 Protein Homology CDS 806495 806866 . - 0 ID=cds-WP_038270543.1;Parent=gene-LPH39_RS03385;Dbxref=Genbank:WP_038270543.1;Name=WP_038270543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083628.1;locus_tag=LPH39_RS03385;product=hypothetical protein;protein_id=WP_038270543.1;transl_table=11 NZ_CP087677.1 RefSeq gene 807085 808095 . - . ID=gene-LPH39_RS03390;Name=dusA;gbkey=Gene;gene=dusA;gene_biotype=protein_coding;locus_tag=LPH39_RS03390;old_locus_tag=LPH39_03390 NZ_CP087677.1 Protein Homology CDS 807085 808095 . - 0 ID=cds-WP_038270542.1;Parent=gene-LPH39_RS03390;Dbxref=Genbank:WP_038270542.1;Name=WP_038270542.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusA;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083629.1;locus_tag=LPH39_RS03390;product=tRNA dihydrouridine(20/20a) synthase DusA;protein_id=WP_038270542.1;transl_table=11 NZ_CP087677.1 RefSeq gene 811408 813453 . - . ID=gene-LPH39_RS03395;Name=LPH39_RS03395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03395;old_locus_tag=LPH39_03395 NZ_CP087677.1 Protein Homology CDS 811408 813453 . - 0 ID=cds-WP_038270540.1;Parent=gene-LPH39_RS03395;Dbxref=Genbank:WP_038270540.1;Name=WP_038270540.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852444.1;locus_tag=LPH39_RS03395;product=TonB-dependent receptor;protein_id=WP_038270540.1;transl_table=11 NZ_CP087677.1 RefSeq gene 813610 814020 . + . ID=gene-LPH39_RS03400;Name=LPH39_RS03400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03400;old_locus_tag=LPH39_03400 NZ_CP087677.1 Protein Homology CDS 813610 814020 . + 0 ID=cds-WP_038270578.1;Parent=gene-LPH39_RS03400;Dbxref=Genbank:WP_038270578.1;Name=WP_038270578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852104.1;locus_tag=LPH39_RS03400;product=MerC domain-containing protein;protein_id=WP_038270578.1;transl_table=11 NZ_CP087677.1 RefSeq gene 814156 814338 . + . ID=gene-LPH39_RS03405;Name=LPH39_RS03405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03405;old_locus_tag=LPH39_03405 NZ_CP087677.1 Protein Homology CDS 814156 814338 . + 0 ID=cds-WP_081755402.1;Parent=gene-LPH39_RS03405;Dbxref=Genbank:WP_081755402.1;Name=WP_081755402.1;Ontology_term=GO:0006412,GO:0003735,GO:0022627;gbkey=CDS;go_component=cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487537.1;locus_tag=LPH39_RS03405;product=30S ribosomal protein THX;protein_id=WP_081755402.1;transl_table=11 NZ_CP087677.1 RefSeq gene 815140 817725 . - . ID=gene-LPH39_RS03410;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;locus_tag=LPH39_RS03410;old_locus_tag=LPH39_03410 NZ_CP087677.1 Protein Homology CDS 815140 817725 . - 0 ID=cds-WP_038270539.1;Parent=gene-LPH39_RS03410;Dbxref=Genbank:WP_038270539.1;Name=WP_038270539.1;Ontology_term=GO:0009408,GO:0042026,GO:0005524,GO:0016887;gbkey=CDS;gene=clpB;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=response to heat|0009408||IEA,protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892912.1;locus_tag=LPH39_RS03410;product=ATP-dependent chaperone ClpB;protein_id=WP_038270539.1;transl_table=11 NZ_CP087677.1 RefSeq gene 818059 818289 . + . ID=gene-LPH39_RS03415;Name=LPH39_RS03415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03415;old_locus_tag=LPH39_03415 NZ_CP087677.1 GeneMarkS-2+ CDS 818059 818289 . + 0 ID=cds-WP_152536580.1;Parent=gene-LPH39_RS03415;Dbxref=Genbank:WP_152536580.1;Name=WP_152536580.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03415;product=hypothetical protein;protein_id=WP_152536580.1;transl_table=11 NZ_CP087677.1 RefSeq gene 818415 818606 . - . ID=gene-LPH39_RS03420;Name=LPH39_RS03420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03420;old_locus_tag=LPH39_03420 NZ_CP087677.1 Protein Homology CDS 818415 818606 . - 0 ID=cds-WP_038270538.1;Parent=gene-LPH39_RS03420;Dbxref=Genbank:WP_038270538.1;Name=WP_038270538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338043.1;locus_tag=LPH39_RS03420;product=rubredoxin;protein_id=WP_038270538.1;transl_table=11 NZ_CP087677.1 RefSeq gene 818684 819298 . + . ID=gene-LPH39_RS03425;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=LPH39_RS03425;old_locus_tag=LPH39_03425 NZ_CP087677.1 Protein Homology CDS 818684 819298 . + 0 ID=cds-WP_038270537.1;Parent=gene-LPH39_RS03425;Dbxref=Genbank:WP_038270537.1;Name=WP_038270537.1;Ontology_term=GO:0009228,GO:0004789;gbkey=CDS;gene=thiE;go_function=thiamine-phosphate diphosphorylase activity|0004789||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852106.1;locus_tag=LPH39_RS03425;product=thiamine phosphate synthase;protein_id=WP_038270537.1;transl_table=11 NZ_CP087677.1 RefSeq gene 819528 819746 . - . ID=gene-LPH39_RS03430;Name=LPH39_RS03430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03430;old_locus_tag=LPH39_03430 NZ_CP087677.1 GeneMarkS-2+ CDS 819528 819746 . - 0 ID=cds-WP_160199303.1;Parent=gene-LPH39_RS03430;Dbxref=Genbank:WP_160199303.1;Name=WP_160199303.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03430;product=hypothetical protein;protein_id=WP_160199303.1;transl_table=11 NZ_CP087677.1 RefSeq gene 819844 820005 . - . ID=gene-LPH39_RS03435;Name=LPH39_RS03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03435;old_locus_tag=LPH39_03435 NZ_CP087677.1 GeneMarkS-2+ CDS 819844 820005 . - 0 ID=cds-WP_160165135.1;Parent=gene-LPH39_RS03435;Dbxref=Genbank:WP_160165135.1;Name=WP_160165135.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03435;product=hypothetical protein;protein_id=WP_160165135.1;transl_table=11 NZ_CP087677.1 RefSeq gene 820790 822019 . + . ID=gene-LPH39_RS03440;Name=LPH39_RS03440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03440;old_locus_tag=LPH39_03440 NZ_CP087677.1 Protein Homology CDS 820790 822019 . + 0 ID=cds-WP_038270535.1;Parent=gene-LPH39_RS03440;Dbxref=Genbank:WP_038270535.1;Name=WP_038270535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086591.1;locus_tag=LPH39_RS03440;product=cytochrome P450;protein_id=WP_038270535.1;transl_table=11 NZ_CP087677.1 RefSeq gene 823625 824893 . + . ID=gene-LPH39_RS03445;Name=LPH39_RS03445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03445;old_locus_tag=LPH39_03445 NZ_CP087677.1 Protein Homology CDS 823625 824893 . + 0 ID=cds-WP_038270533.1;Parent=gene-LPH39_RS03445;Dbxref=Genbank:WP_038270533.1;Name=WP_038270533.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089920.1;locus_tag=LPH39_RS03445;product=lipase;protein_id=WP_038270533.1;transl_table=11 NZ_CP087677.1 RefSeq gene 825634 826878 . + . ID=gene-LPH39_RS03450;Name=LPH39_RS03450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03450;old_locus_tag=LPH39_03450 NZ_CP087677.1 Protein Homology CDS 825634 826878 . + 0 ID=cds-WP_114867225.1;Parent=gene-LPH39_RS03450;Dbxref=Genbank:WP_114867225.1;Name=WP_114867225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892891.1;locus_tag=LPH39_RS03450;product=alpha/beta hydrolase;protein_id=WP_114867225.1;transl_table=11 NZ_CP087677.1 RefSeq gene 827927 828187 . - . ID=gene-LPH39_RS03455;Name=LPH39_RS03455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03455;old_locus_tag=LPH39_03455 NZ_CP087677.1 GeneMarkS-2+ CDS 827927 828187 . - 0 ID=cds-WP_038270531.1;Parent=gene-LPH39_RS03455;Dbxref=Genbank:WP_038270531.1;Name=WP_038270531.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03455;product=hypothetical protein;protein_id=WP_038270531.1;transl_table=11 NZ_CP087677.1 RefSeq gene 828203 828688 . - . ID=gene-LPH39_RS03460;Name=LPH39_RS03460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03460;old_locus_tag=LPH39_03460 NZ_CP087677.1 GeneMarkS-2+ CDS 828203 828688 . - 0 ID=cds-WP_038270530.1;Parent=gene-LPH39_RS03460;Dbxref=Genbank:WP_038270530.1;Name=WP_038270530.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03460;product=hypothetical protein;protein_id=WP_038270530.1;transl_table=11 NZ_CP087677.1 RefSeq gene 829350 829526 . + . ID=gene-LPH39_RS03465;Name=LPH39_RS03465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03465;old_locus_tag=LPH39_03465 NZ_CP087677.1 GeneMarkS-2+ CDS 829350 829526 . + 0 ID=cds-WP_160165133.1;Parent=gene-LPH39_RS03465;Dbxref=Genbank:WP_160165133.1;Name=WP_160165133.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03465;product=hypothetical protein;protein_id=WP_160165133.1;transl_table=11 NZ_CP087677.1 RefSeq gene 830032 831447 . + . ID=gene-LPH39_RS03470;Name=LPH39_RS03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03470;old_locus_tag=LPH39_03470 NZ_CP087677.1 Protein Homology CDS 830032 831447 . + 0 ID=cds-WP_038270576.1;Parent=gene-LPH39_RS03470;Dbxref=Genbank:WP_038270576.1;Name=WP_038270576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086603.1;locus_tag=LPH39_RS03470;product=replicative DNA helicase;protein_id=WP_038270576.1;transl_table=11 NZ_CP087677.1 RefSeq gene 831975 832697 . + . ID=gene-LPH39_RS03475;Name=LPH39_RS03475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03475;old_locus_tag=LPH39_03475 NZ_CP087677.1 Protein Homology CDS 831975 832697 . + 0 ID=cds-WP_051482259.1;Parent=gene-LPH39_RS03475;Dbxref=Genbank:WP_051482259.1;Name=WP_051482259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089919.1;locus_tag=LPH39_RS03475;product=OmpA family protein;protein_id=WP_051482259.1;transl_table=11 NZ_CP087677.1 RefSeq gene 835122 836075 . - . ID=gene-LPH39_RS03480;Name=LPH39_RS03480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03480;old_locus_tag=LPH39_03480 NZ_CP087677.1 Protein Homology CDS 835122 836075 . - 0 ID=cds-WP_038270529.1;Parent=gene-LPH39_RS03480;Dbxref=Genbank:WP_038270529.1;Name=WP_038270529.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089916.1;locus_tag=LPH39_RS03480;product=ribokinase;protein_id=WP_038270529.1;transl_table=11 NZ_CP087677.1 RefSeq gene 836606 837577 . + . ID=gene-LPH39_RS03485;Name=LPH39_RS03485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03485;old_locus_tag=LPH39_03485 NZ_CP087677.1 Protein Homology CDS 836606 837577 . + 0 ID=cds-WP_038270528.1;Parent=gene-LPH39_RS03485;Dbxref=Genbank:WP_038270528.1;Name=WP_038270528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338044.1;locus_tag=LPH39_RS03485;product=aldo/keto reductase;protein_id=WP_038270528.1;transl_table=11 NZ_CP087677.1 RefSeq gene 839195 841624 . - . ID=gene-LPH39_RS03490;Name=LPH39_RS03490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03490;old_locus_tag=LPH39_03490 NZ_CP087677.1 Protein Homology CDS 839195 841624 . - 0 ID=cds-WP_038270527.1;Parent=gene-LPH39_RS03490;Dbxref=Genbank:WP_038270527.1;Name=WP_038270527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812411.1;locus_tag=LPH39_RS03490;product=penicillin-binding protein 1A;protein_id=WP_038270527.1;transl_table=11 NZ_CP087677.1 RefSeq gene 841842 842924 . + . ID=gene-LPH39_RS03495;Name=pilM;gbkey=Gene;gene=pilM;gene_biotype=protein_coding;locus_tag=LPH39_RS03495;old_locus_tag=LPH39_03495 NZ_CP087677.1 Protein Homology CDS 841842 842924 . + 0 ID=cds-WP_171898059.1;Parent=gene-LPH39_RS03495;Dbxref=Genbank:WP_171898059.1;Name=WP_171898059.1;Ontology_term=GO:0009297;gbkey=CDS;gene=pilM;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974443.1;locus_tag=LPH39_RS03495;product=type IV pilus assembly protein PilM;protein_id=WP_171898059.1;transl_table=11 NZ_CP087677.1 RefSeq gene 842924 843601 . + . ID=gene-LPH39_RS03500;Name=LPH39_RS03500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03500;old_locus_tag=LPH39_03500 NZ_CP087677.1 Protein Homology CDS 842924 843601 . + 0 ID=cds-WP_038270525.1;Parent=gene-LPH39_RS03500;Dbxref=Genbank:WP_038270525.1;Name=WP_038270525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089910.1;locus_tag=LPH39_RS03500;product=PilN domain-containing protein;protein_id=WP_038270525.1;transl_table=11 NZ_CP087677.1 RefSeq gene 843601 844269 . + . ID=gene-LPH39_RS03505;Name=LPH39_RS03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03505;old_locus_tag=LPH39_03505 NZ_CP087677.1 Protein Homology CDS 843601 844269 . + 0 ID=cds-WP_038270524.1;Parent=gene-LPH39_RS03505;Dbxref=Genbank:WP_038270524.1;Name=WP_038270524.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089909.1;locus_tag=LPH39_RS03505;product=type 4a pilus biogenesis protein PilO;protein_id=WP_038270524.1;transl_table=11 NZ_CP087677.1 RefSeq gene 844266 844796 . + . ID=gene-LPH39_RS03510;Name=LPH39_RS03510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03510;old_locus_tag=LPH39_03510 NZ_CP087677.1 Protein Homology CDS 844266 844796 . + 0 ID=cds-WP_038270523.1;Parent=gene-LPH39_RS03510;Dbxref=Genbank:WP_038270523.1;Name=WP_038270523.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086595.1;locus_tag=LPH39_RS03510;product=pilus assembly protein PilP;protein_id=WP_038270523.1;transl_table=11 NZ_CP087677.1 RefSeq gene 844820 846688 . + . ID=gene-LPH39_RS03515;Name=LPH39_RS03515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03515;old_locus_tag=LPH39_03515 NZ_CP087677.1 Protein Homology CDS 844820 846688 . + 0 ID=cds-WP_171898060.1;Parent=gene-LPH39_RS03515;Dbxref=Genbank:WP_171898060.1;Name=WP_171898060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911884.1;locus_tag=LPH39_RS03515;product=type IV pilus secretin PilQ family protein;protein_id=WP_171898060.1;transl_table=11 NZ_CP087677.1 RefSeq gene 847872 848630 . + . ID=gene-LPH39_RS03520;Name=LPH39_RS03520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03520;old_locus_tag=LPH39_03520 NZ_CP087677.1 Protein Homology CDS 847872 848630 . + 0 ID=cds-WP_038270521.1;Parent=gene-LPH39_RS03520;Dbxref=Genbank:WP_038270521.1;Name=WP_038270521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852112.1;locus_tag=LPH39_RS03520;product=phosphatase PAP2 family protein;protein_id=WP_038270521.1;transl_table=11 NZ_CP087677.1 RefSeq gene 848666 850282 . + . ID=gene-LPH39_RS03525;Name=LPH39_RS03525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03525;old_locus_tag=LPH39_03525 NZ_CP087677.1 Protein Homology CDS 848666 850282 . + 0 ID=cds-WP_051482258.1;Parent=gene-LPH39_RS03525;Dbxref=Genbank:WP_051482258.1;Name=WP_051482258.1;Ontology_term=GO:0016772;gbkey=CDS;go_function=transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013535821.1;locus_tag=LPH39_RS03525;product=phosphoethanolamine--lipid A transferase;protein_id=WP_051482258.1;transl_table=11 NZ_CP087677.1 RefSeq gene 851077 852285 . - . ID=gene-LPH39_RS03530;Name=LPH39_RS03530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03530;old_locus_tag=LPH39_03530 NZ_CP087677.1 Protein Homology CDS 851077 852285 . - 0 ID=cds-WP_038270519.1;Parent=gene-LPH39_RS03530;Dbxref=Genbank:WP_038270519.1;Name=WP_038270519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086591.1;locus_tag=LPH39_RS03530;product=cytochrome P450;protein_id=WP_038270519.1;transl_table=11 NZ_CP087677.1 RefSeq gene 853384 855540 . - . ID=gene-LPH39_RS03535;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=LPH39_RS03535;old_locus_tag=LPH39_03535 NZ_CP087677.1 Protein Homology CDS 853384 855540 . - 0 ID=cds-WP_038270518.1;Parent=gene-LPH39_RS03535;Dbxref=Genbank:WP_038270518.1;Name=WP_038270518.1;Ontology_term=GO:0006281,GO:0006310,GO:0003676,GO:0003678,GO:0005524;gbkey=CDS;gene=recG;go_function=nucleic acid binding|0003676||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300815.1;locus_tag=LPH39_RS03535;product=ATP-dependent DNA helicase RecG;protein_id=WP_038270518.1;transl_table=11 NZ_CP087677.1 RefSeq gene 855548 855931 . - . ID=gene-LPH39_RS03540;Name=LPH39_RS03540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03540;old_locus_tag=LPH39_03540 NZ_CP087677.1 Protein Homology CDS 855548 855931 . - 0 ID=cds-WP_038270517.1;Parent=gene-LPH39_RS03540;Dbxref=Genbank:WP_038270517.1;Name=WP_038270517.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486159.1;locus_tag=LPH39_RS03540;product=RidA family protein;protein_id=WP_038270517.1;transl_table=11 NZ_CP087677.1 RefSeq gene 856213 858384 . - . ID=gene-LPH39_RS03545;Name=LPH39_RS03545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03545;old_locus_tag=LPH39_03545 NZ_CP087677.1 Protein Homology CDS 856213 858384 . - 0 ID=cds-WP_038270516.1;Parent=gene-LPH39_RS03545;Dbxref=Genbank:WP_038270516.1;Name=WP_038270516.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269543.1;locus_tag=LPH39_RS03545;product=bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=WP_038270516.1;transl_table=11 NZ_CP087677.1 RefSeq gene 859376 859561 . + . ID=gene-LPH39_RS03550;Name=LPH39_RS03550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03550;old_locus_tag=LPH39_03550 NZ_CP087677.1 GeneMarkS-2+ CDS 859376 859561 . + 0 ID=cds-WP_038270515.1;Parent=gene-LPH39_RS03550;Dbxref=Genbank:WP_038270515.1;Name=WP_038270515.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03550;product=hypothetical protein;protein_id=WP_038270515.1;transl_table=11 NZ_CP087677.1 RefSeq gene 860758 862143 . + . ID=gene-LPH39_RS03555;Name=LPH39_RS03555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03555;old_locus_tag=LPH39_03555 NZ_CP087677.1 Protein Homology CDS 860758 862143 . + 0 ID=cds-WP_038270513.1;Parent=gene-LPH39_RS03555;Dbxref=Genbank:WP_038270513.1;Name=WP_038270513.1;Ontology_term=GO:0016491,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003466154.1;locus_tag=LPH39_RS03555;product=FAD-binding protein;protein_id=WP_038270513.1;transl_table=11 NZ_CP087677.1 RefSeq gene 865565 866689 . + . ID=gene-LPH39_RS03560;Name=LPH39_RS03560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03560;old_locus_tag=LPH39_03560 NZ_CP087677.1 Protein Homology CDS 865565 866689 . + 0 ID=cds-WP_038270511.1;Parent=gene-LPH39_RS03560;Dbxref=Genbank:WP_038270511.1;Name=WP_038270511.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171142.1;locus_tag=LPH39_RS03560;product=OmpA family protein;protein_id=WP_038270511.1;transl_table=11 NZ_CP087677.1 RefSeq gene 868165 868689 . + . ID=gene-LPH39_RS03565;Name=LPH39_RS03565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03565;old_locus_tag=LPH39_03565 NZ_CP087677.1 Protein Homology CDS 868165 868689 . + 0 ID=cds-WP_038270510.1;Parent=gene-LPH39_RS03565;Dbxref=Genbank:WP_038270510.1;Name=WP_038270510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851646.1;locus_tag=LPH39_RS03565;product=disulfide bond formation protein B;protein_id=WP_038270510.1;transl_table=11 NZ_CP087677.1 RefSeq gene 869507 872293 . - . ID=gene-LPH39_RS03570;Name=LPH39_RS03570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03570;old_locus_tag=LPH39_03570 NZ_CP087677.1 Protein Homology CDS 869507 872293 . - 0 ID=cds-WP_038270509.1;Parent=gene-LPH39_RS03570;Dbxref=Genbank:WP_038270509.1;Name=WP_038270509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089937.1;locus_tag=LPH39_RS03570;product=TonB-dependent receptor;protein_id=WP_038270509.1;transl_table=11 NZ_CP087677.1 RefSeq gene 872524 872997 . + . ID=gene-LPH39_RS03575;Name=rlmH;gbkey=Gene;gene=rlmH;gene_biotype=protein_coding;locus_tag=LPH39_RS03575;old_locus_tag=LPH39_03575 NZ_CP087677.1 Protein Homology CDS 872524 872997 . + 0 ID=cds-WP_038270508.1;Parent=gene-LPH39_RS03575;Dbxref=Genbank:WP_038270508.1;Name=WP_038270508.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rlmH;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086621.1;locus_tag=LPH39_RS03575;product=23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH;protein_id=WP_038270508.1;transl_table=11 NZ_CP087677.1 RefSeq gene 873715 873927 . - . ID=gene-LPH39_RS03580;Name=LPH39_RS03580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03580;old_locus_tag=LPH39_03580 NZ_CP087677.1 GeneMarkS-2+ CDS 873715 873927 . - 0 ID=cds-WP_038270507.1;Parent=gene-LPH39_RS03580;Dbxref=Genbank:WP_038270507.1;Name=WP_038270507.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03580;product=hypothetical protein;protein_id=WP_038270507.1;transl_table=11 NZ_CP087677.1 RefSeq gene 874806 874880 . - . ID=gene-LPH39_RS03585;Name=LPH39_RS03585;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS03585;old_locus_tag=LPH39_03585 NZ_CP087677.1 tRNAscan-SE tRNA 874806 874880 . - . ID=rna-LPH39_RS03585;Parent=gene-LPH39_RS03585;anticodon=(pos:complement(874846..874848));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS03585;product=tRNA-Val NZ_CP087677.1 tRNAscan-SE exon 874806 874880 . - . ID=exon-LPH39_RS03585-1;Parent=rna-LPH39_RS03585;anticodon=(pos:complement(874846..874848));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS03585;product=tRNA-Val NZ_CP087677.1 RefSeq gene 874990 877002 . - . ID=gene-LPH39_RS03590;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=LPH39_RS03590;old_locus_tag=LPH39_03590 NZ_CP087677.1 Protein Homology CDS 874990 877002 . - 0 ID=cds-WP_038270506.1;Parent=gene-LPH39_RS03590;Dbxref=Genbank:WP_038270506.1;Name=WP_038270506.1;Ontology_term=GO:0006289,GO:0003677,GO:0005515,GO:0005524,GO:0016787,GO:0016887,GO:0009380;gbkey=CDS;gene=uvrB;go_component=excinuclease repair complex|0009380||IEA;go_function=DNA binding|0003677||IEA,protein binding|0005515||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010342098.1;locus_tag=LPH39_RS03590;product=excinuclease ABC subunit UvrB;protein_id=WP_038270506.1;transl_table=11 NZ_CP087677.1 RefSeq gene 877157 877702 . + . ID=gene-LPH39_RS03595;Name=LPH39_RS03595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03595;old_locus_tag=LPH39_03595 NZ_CP087677.1 Protein Homology CDS 877157 877702 . + 0 ID=cds-WP_038270574.1;Parent=gene-LPH39_RS03595;Dbxref=Genbank:WP_038270574.1;Name=WP_038270574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098232.1;locus_tag=LPH39_RS03595;product=Tfp pilus assembly protein FimT/FimU;protein_id=WP_038270574.1;transl_table=11 NZ_CP087677.1 RefSeq gene 878409 878915 . - . ID=gene-LPH39_RS03600;Name=LPH39_RS03600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03600;old_locus_tag=LPH39_03600 NZ_CP087677.1 Protein Homology CDS 878409 878915 . - 0 ID=cds-WP_038270505.1;Parent=gene-LPH39_RS03600;Dbxref=Genbank:WP_038270505.1;Name=WP_038270505.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089696.1;locus_tag=LPH39_RS03600;product=hypothetical protein;protein_id=WP_038270505.1;transl_table=11 NZ_CP087677.1 RefSeq gene 878935 879843 . - . ID=gene-LPH39_RS03605;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=LPH39_RS03605;old_locus_tag=LPH39_03605 NZ_CP087677.1 Protein Homology CDS 878935 879843 . - 0 ID=cds-WP_038270504.1;Parent=gene-LPH39_RS03605;Dbxref=Genbank:WP_038270504.1;Name=WP_038270504.1;Ontology_term=GO:0009089,GO:0008840;gbkey=CDS;gene=dapA;go_function=4-hydroxy-tetrahydrodipicolinate synthase activity|0008840||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089694.1;locus_tag=LPH39_RS03605;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_038270504.1;transl_table=11 NZ_CP087677.1 RefSeq gene 879945 880571 . + . ID=gene-LPH39_RS03610;Name=LPH39_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03610;old_locus_tag=LPH39_03610 NZ_CP087677.1 Protein Homology CDS 879945 880571 . + 0 ID=cds-WP_114867181.1;Parent=gene-LPH39_RS03610;Dbxref=Genbank:WP_114867181.1;Name=WP_114867181.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503111.1;locus_tag=LPH39_RS03610;product=glycine cleavage system protein R;protein_id=WP_114867181.1;transl_table=11 NZ_CP087677.1 RefSeq gene 880619 881098 . + . ID=gene-LPH39_RS03615;Name=LPH39_RS03615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03615;old_locus_tag=LPH39_03615 NZ_CP087677.1 Protein Homology CDS 880619 881098 . + 0 ID=cds-WP_038270503.1;Parent=gene-LPH39_RS03615;Dbxref=Genbank:WP_038270503.1;Name=WP_038270503.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851611.1;locus_tag=LPH39_RS03615;product=peroxiredoxin;protein_id=WP_038270503.1;transl_table=11 NZ_CP087677.1 RefSeq gene 881176 882576 . + . ID=gene-LPH39_RS03620;Name=LPH39_RS03620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03620;old_locus_tag=LPH39_03620 NZ_CP087677.1 Protein Homology CDS 881176 882576 . + 0 ID=cds-WP_038270502.1;Parent=gene-LPH39_RS03620;Dbxref=Genbank:WP_038270502.1;Name=WP_038270502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365742.1;locus_tag=LPH39_RS03620;product=PhoH family protein;protein_id=WP_038270502.1;transl_table=11 NZ_CP087677.1 RefSeq gene 883430 883702 . - . ID=gene-LPH39_RS03625;Name=LPH39_RS03625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03625;old_locus_tag=LPH39_03625 NZ_CP087677.1 GeneMarkS-2+ CDS 883430 883702 . - 0 ID=cds-WP_038270501.1;Parent=gene-LPH39_RS03625;Dbxref=Genbank:WP_038270501.1;Name=WP_038270501.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03625;product=hypothetical protein;protein_id=WP_038270501.1;transl_table=11 NZ_CP087677.1 RefSeq gene 884222 884353 . - . ID=gene-LPH39_RS11980;Name=LPH39_RS11980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11980 NZ_CP087677.1 GeneMarkS-2+ CDS 884222 884353 . - 0 ID=cds-WP_267903159.1;Parent=gene-LPH39_RS11980;Dbxref=Genbank:WP_267903159.1;Name=WP_267903159.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11980;product=hypothetical protein;protein_id=WP_267903159.1;transl_table=11 NZ_CP087677.1 RefSeq gene 884376 884564 . + . ID=gene-LPH39_RS03630;Name=LPH39_RS03630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03630;old_locus_tag=LPH39_03630 NZ_CP087677.1 GeneMarkS-2+ CDS 884376 884564 . + 0 ID=cds-WP_171898061.1;Parent=gene-LPH39_RS03630;Dbxref=Genbank:WP_171898061.1;Name=WP_171898061.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03630;product=hypothetical protein;protein_id=WP_171898061.1;transl_table=11 NZ_CP087677.1 RefSeq gene 884555 884848 . - . ID=gene-LPH39_RS03635;Name=LPH39_RS03635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03635;old_locus_tag=LPH39_03635 NZ_CP087677.1 Protein Homology CDS 884555 884848 . - 0 ID=cds-WP_038270572.1;Parent=gene-LPH39_RS03635;Dbxref=Genbank:WP_038270572.1;Name=WP_038270572.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089684.1;locus_tag=LPH39_RS03635;product=hypothetical protein;protein_id=WP_038270572.1;transl_table=11 NZ_CP087677.1 RefSeq gene 886360 887334 . - . ID=gene-LPH39_RS03640;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;locus_tag=LPH39_RS03640;old_locus_tag=LPH39_03640 NZ_CP087677.1 Protein Homology CDS 886360 887334 . - 0 ID=cds-WP_038270498.1;Parent=gene-LPH39_RS03640;Dbxref=Genbank:WP_038270498.1;Name=WP_038270498.1;Ontology_term=GO:0009228,GO:0009030;gbkey=CDS;gene=thiL;go_function=thiamine-phosphate kinase activity|0009030||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851606.1;locus_tag=LPH39_RS03640;product=thiamine-phosphate kinase;protein_id=WP_038270498.1;transl_table=11 NZ_CP087677.1 RefSeq gene 887418 887888 . - . ID=gene-LPH39_RS03645;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=LPH39_RS03645;old_locus_tag=LPH39_03645 NZ_CP087677.1 Protein Homology CDS 887418 887888 . - 0 ID=cds-WP_038270497.1;Parent=gene-LPH39_RS03645;Dbxref=Genbank:WP_038270497.1;Name=WP_038270497.1;Ontology_term=GO:0006355;gbkey=CDS;gene=nusB;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893474.1;locus_tag=LPH39_RS03645;product=transcription antitermination factor NusB;protein_id=WP_038270497.1;transl_table=11 NZ_CP087677.1 RefSeq gene 887885 888349 . - . ID=gene-LPH39_RS03650;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=LPH39_RS03650;old_locus_tag=LPH39_03650 NZ_CP087677.1 Protein Homology CDS 887885 888349 . - 0 ID=cds-WP_038270496.1;Parent=gene-LPH39_RS03650;Dbxref=Genbank:WP_038270496.1;Name=WP_038270496.1;Ontology_term=GO:0000906,GO:0009349;gbkey=CDS;gene=ribH;go_component=riboflavin synthase complex|0009349||IEA;go_function=6%2C7-dimethyl-8-ribityllumazine synthase activity|0000906||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409394.1;locus_tag=LPH39_RS03650;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_038270496.1;transl_table=11 NZ_CP087677.1 RefSeq gene 888380 889513 . - . ID=gene-LPH39_RS03655;Name=ribB;gbkey=Gene;gene=ribB;gene_biotype=protein_coding;locus_tag=LPH39_RS03655;old_locus_tag=LPH39_03655 NZ_CP087677.1 Protein Homology CDS 888380 889513 . - 0 ID=cds-WP_038270495.1;Parent=gene-LPH39_RS03655;Dbxref=Genbank:WP_038270495.1;Name=WP_038270495.1;Ontology_term=GO:0008686;gbkey=CDS;gene=ribB;go_function=3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity|0008686||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851604.1;locus_tag=LPH39_RS03655;product=3%2C4-dihydroxy-2-butanone-4-phosphate synthase;protein_id=WP_038270495.1;transl_table=11 NZ_CP087677.1 RefSeq gene 889513 890112 . - . ID=gene-LPH39_RS03660;Name=LPH39_RS03660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03660;old_locus_tag=LPH39_03660 NZ_CP087677.1 Protein Homology CDS 889513 890112 . - 0 ID=cds-WP_038270494.1;Parent=gene-LPH39_RS03660;Dbxref=Genbank:WP_038270494.1;Name=WP_038270494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576782.1;locus_tag=LPH39_RS03660;product=riboflavin synthase;protein_id=WP_038270494.1;transl_table=11 NZ_CP087677.1 RefSeq gene 890799 891893 . - . ID=gene-LPH39_RS03665;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=LPH39_RS03665;old_locus_tag=LPH39_03665 NZ_CP087677.1 Protein Homology CDS 890799 891893 . - 0 ID=cds-WP_038270493.1;Parent=gene-LPH39_RS03665;Dbxref=Genbank:WP_038270493.1;Name=WP_038270493.1;Ontology_term=GO:0008703,GO:0008835;gbkey=CDS;gene=ribD;go_function=5-amino-6-(5-phosphoribosylamino)uracil reductase activity|0008703||IEA,diaminohydroxyphosphoribosylaminopyrimidine deaminase activity|0008835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893469.1;locus_tag=LPH39_RS03665;product=bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD;protein_id=WP_038270493.1;transl_table=11 NZ_CP087677.1 RefSeq gene 891906 892184 . - . ID=gene-LPH39_RS03670;Name=LPH39_RS03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03670;old_locus_tag=LPH39_03670 NZ_CP087677.1 GeneMarkS-2+ CDS 891906 892184 . - 0 ID=cds-WP_038270492.1;Parent=gene-LPH39_RS03670;Dbxref=Genbank:WP_038270492.1;Name=WP_038270492.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03670;product=hypothetical protein;protein_id=WP_038270492.1;transl_table=11 NZ_CP087677.1 RefSeq gene 892293 892838 . - . ID=gene-LPH39_RS03675;Name=nrdR;gbkey=Gene;gene=nrdR;gene_biotype=protein_coding;locus_tag=LPH39_RS03675;old_locus_tag=LPH39_03675 NZ_CP087677.1 Protein Homology CDS 892293 892838 . - 0 ID=cds-WP_038270491.1;Parent=gene-LPH39_RS03675;Dbxref=Genbank:WP_038270491.1;Name=WP_038270491.1;Ontology_term=GO:0006355,GO:0140110;gbkey=CDS;gene=nrdR;go_function=transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086418.1;locus_tag=LPH39_RS03675;product=transcriptional regulator NrdR;protein_id=WP_038270491.1;transl_table=11 NZ_CP087677.1 RefSeq gene 892856 893362 . - . ID=gene-LPH39_RS03680;Name=LPH39_RS03680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03680;old_locus_tag=LPH39_03680 NZ_CP087677.1 Protein Homology CDS 892856 893362 . - 0 ID=cds-WP_038270490.1;Parent=gene-LPH39_RS03680;Dbxref=Genbank:WP_038270490.1;Name=WP_038270490.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893466.1;locus_tag=LPH39_RS03680;product=hypothetical protein;protein_id=WP_038270490.1;transl_table=11 NZ_CP087677.1 RefSeq gene 893446 894699 . - . ID=gene-LPH39_RS03685;Name=LPH39_RS03685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03685;old_locus_tag=LPH39_03685 NZ_CP087677.1 Protein Homology CDS 893446 894699 . - 0 ID=cds-WP_038270489.1;Parent=gene-LPH39_RS03685;Dbxref=Genbank:WP_038270489.1;Name=WP_038270489.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382734.1;locus_tag=LPH39_RS03685;product=serine hydroxymethyltransferase;protein_id=WP_038270489.1;transl_table=11 NZ_CP087677.1 RefSeq gene 895220 896884 . + . ID=gene-LPH39_RS03690;Name=ettA;gbkey=Gene;gene=ettA;gene_biotype=protein_coding;locus_tag=LPH39_RS03690;old_locus_tag=LPH39_03690 NZ_CP087677.1 Protein Homology CDS 895220 896884 . + 0 ID=cds-WP_038270488.1;Parent=gene-LPH39_RS03690;Dbxref=Genbank:WP_038270488.1;Name=WP_038270488.1;Ontology_term=GO:0045900,GO:0005524;gbkey=CDS;gene=ettA;go_function=ATP binding|0005524||IEA;go_process=negative regulation of translational elongation|0045900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019398294.1;locus_tag=LPH39_RS03690;product=energy-dependent translational throttle protein EttA;protein_id=WP_038270488.1;transl_table=11 NZ_CP087677.1 RefSeq gene 897657 899345 . + . ID=gene-LPH39_RS03695;Name=mqo;gbkey=Gene;gene=mqo;gene_biotype=protein_coding;locus_tag=LPH39_RS03695;old_locus_tag=LPH39_03695 NZ_CP087677.1 Protein Homology CDS 897657 899345 . + 0 ID=cds-WP_038270487.1;Parent=gene-LPH39_RS03695;Dbxref=Genbank:WP_038270487.1;Name=WP_038270487.1;Ontology_term=GO:0006099,GO:0008924;gbkey=CDS;gene=mqo;go_function=malate dehydrogenase (quinone) activity|0008924||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851597.1;locus_tag=LPH39_RS03695;product=malate dehydrogenase (quinone);protein_id=WP_038270487.1;transl_table=11 NZ_CP087677.1 RefSeq gene 899525 899950 . - . ID=gene-LPH39_RS03700;Name=LPH39_RS03700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03700;old_locus_tag=LPH39_03700 NZ_CP087677.1 Protein Homology CDS 899525 899950 . - 0 ID=cds-WP_038270486.1;Parent=gene-LPH39_RS03700;Dbxref=Genbank:WP_038270486.1;Name=WP_038270486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086425.1;locus_tag=LPH39_RS03700;product=thiol-disulfide oxidoreductase DCC family protein;protein_id=WP_038270486.1;transl_table=11 NZ_CP087677.1 RefSeq gene 900439 901221 . - . ID=gene-LPH39_RS03705;Name=pgeF;gbkey=Gene;gene=pgeF;gene_biotype=protein_coding;locus_tag=LPH39_RS03705;old_locus_tag=LPH39_03705 NZ_CP087677.1 Protein Homology CDS 900439 901221 . - 0 ID=cds-WP_038270485.1;Parent=gene-LPH39_RS03705;Dbxref=Genbank:WP_038270485.1;Name=WP_038270485.1;gbkey=CDS;gene=pgeF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851595.1;locus_tag=LPH39_RS03705;product=peptidoglycan editing factor PgeF;protein_id=WP_038270485.1;transl_table=11 NZ_CP087677.1 RefSeq gene 901229 902206 . - . ID=gene-LPH39_RS03710;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=LPH39_RS03710;old_locus_tag=LPH39_03710 NZ_CP087677.1 Protein Homology CDS 901229 902206 . - 0 ID=cds-WP_038270484.1;Parent=gene-LPH39_RS03710;Dbxref=Genbank:WP_038270484.1;Name=WP_038270484.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089658.1;locus_tag=LPH39_RS03710;product=23S rRNA pseudouridine(1911/1915/1917) synthase RluD;protein_id=WP_038270484.1;transl_table=11 NZ_CP087677.1 RefSeq gene 902321 903199 . + . ID=gene-LPH39_RS03715;Name=LPH39_RS03715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03715;old_locus_tag=LPH39_03715 NZ_CP087677.1 Protein Homology CDS 902321 903199 . + 0 ID=cds-WP_038270483.1;Parent=gene-LPH39_RS03715;Dbxref=Genbank:WP_038270483.1;Name=WP_038270483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089657.1;locus_tag=LPH39_RS03715;product=outer membrane protein assembly factor BamD;protein_id=WP_038270483.1;transl_table=11 NZ_CP087677.1 RefSeq gene 904332 904580 . - . ID=gene-LPH39_RS03720;Name=LPH39_RS03720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03720;old_locus_tag=LPH39_03720 NZ_CP087677.1 Protein Homology CDS 904332 904580 . - 0 ID=cds-WP_038270481.1;Parent=gene-LPH39_RS03720;Dbxref=Genbank:WP_038270481.1;Name=WP_038270481.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086434.1;locus_tag=LPH39_RS03720;product=hypothetical protein;protein_id=WP_038270481.1;transl_table=11 NZ_CP087677.1 RefSeq gene 904584 906434 . - . ID=gene-LPH39_RS03725;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=LPH39_RS03725;old_locus_tag=LPH39_03725 NZ_CP087677.1 Protein Homology CDS 904584 906434 . - 0 ID=cds-WP_038270480.1;Parent=gene-LPH39_RS03725;Dbxref=Genbank:WP_038270480.1;Name=WP_038270480.1;Ontology_term=GO:0006826,GO:0015093;gbkey=CDS;gene=feoB;go_function=ferrous iron transmembrane transporter activity|0015093||IEA;go_process=iron ion transport|0006826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851591.1;locus_tag=LPH39_RS03725;product=ferrous iron transport protein B;protein_id=WP_038270480.1;transl_table=11 NZ_CP087677.1 RefSeq gene 906431 906679 . - . ID=gene-LPH39_RS03730;Name=LPH39_RS03730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03730;old_locus_tag=LPH39_03730 NZ_CP087677.1 Protein Homology CDS 906431 906679 . - 0 ID=cds-WP_038270479.1;Parent=gene-LPH39_RS03730;Dbxref=Genbank:WP_038270479.1;Name=WP_038270479.1;Ontology_term=GO:0046914;gbkey=CDS;go_function=transition metal ion binding|0046914||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893451.1;locus_tag=LPH39_RS03730;product=FeoA domain-containing protein;protein_id=WP_038270479.1;transl_table=11 NZ_CP087677.1 RefSeq gene 908840 909616 . - . ID=gene-LPH39_RS03735;Name=LPH39_RS03735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03735;old_locus_tag=LPH39_03735 NZ_CP087677.1 Protein Homology CDS 908840 909616 . - 0 ID=cds-WP_038270571.1;Parent=gene-LPH39_RS03735;Dbxref=Genbank:WP_038270571.1;Name=WP_038270571.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903673.1;locus_tag=LPH39_RS03735;product=SDR family oxidoreductase;protein_id=WP_038270571.1;transl_table=11 NZ_CP087677.1 RefSeq gene 911045 911479 . - . ID=gene-LPH39_RS03740;Name=LPH39_RS03740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03740;old_locus_tag=LPH39_03740 NZ_CP087677.1 Protein Homology CDS 911045 911479 . - 0 ID=cds-WP_038270476.1;Parent=gene-LPH39_RS03740;Dbxref=Genbank:WP_038270476.1;Name=WP_038270476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901612.1;locus_tag=LPH39_RS03740;product=ClpXP protease specificity-enhancing factor;protein_id=WP_038270476.1;transl_table=11 NZ_CP087677.1 RefSeq gene 911516 912151 . - . ID=gene-LPH39_RS03745;Name=LPH39_RS03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03745;old_locus_tag=LPH39_03745 NZ_CP087677.1 Protein Homology CDS 911516 912151 . - 0 ID=cds-WP_038270475.1;Parent=gene-LPH39_RS03745;Dbxref=Genbank:WP_038270475.1;Name=WP_038270475.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004152019.1;locus_tag=LPH39_RS03745;product=glutathione S-transferase N-terminal domain-containing protein;protein_id=WP_038270475.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 912308 913032 . - . ID=gene-LPH39_RS03750;Name=LPH39_RS03750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS03750;old_locus_tag=LPH39_03750;pseudo=true NZ_CP087677.1 Protein Homology CDS 912308 913032 . - 0 ID=cds-LPH39_RS03750;Parent=gene-LPH39_RS03750;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098246.1;locus_tag=LPH39_RS03750;product=cytochrome c1;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 913025 914283 . - . ID=gene-LPH39_RS03755;Name=LPH39_RS03755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS03755;old_locus_tag=LPH39_03755;pseudo=true NZ_CP087677.1 Protein Homology CDS 913025 914283 . - 0 ID=cds-LPH39_RS03755;Parent=gene-LPH39_RS03755;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965674.1;locus_tag=LPH39_RS03755;product=cytochrome bc complex cytochrome b subunit;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 914314 914874 . - . ID=gene-LPH39_RS03760;Name=petA;gbkey=Gene;gene=petA;gene_biotype=pseudogene;locus_tag=LPH39_RS03760;old_locus_tag=LPH39_03760;partial=true;pseudo=true;start_range=.,914314 NZ_CP087677.1 Protein Homology CDS 914314 914874 . - 0 ID=cds-LPH39_RS03760;Parent=gene-LPH39_RS03760;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0009060,GO:0008121,GO:0009055,GO:0045275;gbkey=CDS;gene=petA;go_component=respiratory chain complex III|0045275||IEA;go_function=ubiquinol-cytochrome-c reductase activity|0008121||IEA,electron transfer activity|0009055||IEA;go_process=aerobic respiration|0009060||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010382428.1;locus_tag=LPH39_RS03760;partial=true;product=ubiquinol-cytochrome c reductase iron-sulfur subunit;pseudo=true;start_range=.,914314;transl_table=11 NZ_CP087677.1 RefSeq gene 915055 915963 . - . ID=gene-LPH39_RS03765;Name=LPH39_RS03765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03765;old_locus_tag=LPH39_03765 NZ_CP087677.1 Protein Homology CDS 915055 915963 . - 0 ID=cds-WP_038270474.1;Parent=gene-LPH39_RS03765;Dbxref=Genbank:WP_038270474.1;Name=WP_038270474.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089613.1;locus_tag=LPH39_RS03765;product=lytic transglycosylase domain-containing protein;protein_id=WP_038270474.1;transl_table=11 NZ_CP087677.1 RefSeq gene 916132 917625 . + . ID=gene-LPH39_RS03770;Name=miaB;gbkey=Gene;gene=miaB;gene_biotype=protein_coding;locus_tag=LPH39_RS03770;old_locus_tag=LPH39_03770 NZ_CP087677.1 Protein Homology CDS 916132 917625 . + 0 ID=cds-WP_038270473.1;Parent=gene-LPH39_RS03770;Dbxref=Genbank:WP_038270473.1;Name=WP_038270473.1;Ontology_term=GO:0006400,GO:0016782,GO:0051539,GO:1904047;gbkey=CDS;gene=miaB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851569.1;locus_tag=LPH39_RS03770;product=tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB;protein_id=WP_038270473.1;transl_table=11 NZ_CP087677.1 RefSeq gene 917969 918952 . + . ID=gene-LPH39_RS03775;Name=LPH39_RS03775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03775;old_locus_tag=LPH39_03775 NZ_CP087677.1 Protein Homology CDS 917969 918952 . + 0 ID=cds-WP_038270472.1;Parent=gene-LPH39_RS03775;Dbxref=Genbank:WP_038270472.1;Name=WP_038270472.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851568.1;locus_tag=LPH39_RS03775;product=PhoH family protein;protein_id=WP_038270472.1;transl_table=11 NZ_CP087677.1 RefSeq gene 919023 919505 . + . ID=gene-LPH39_RS03780;Name=ybeY;gbkey=Gene;gene=ybeY;gene_biotype=protein_coding;locus_tag=LPH39_RS03780;old_locus_tag=LPH39_03780 NZ_CP087677.1 Protein Homology CDS 919023 919505 . + 0 ID=cds-WP_038270471.1;Parent=gene-LPH39_RS03780;Dbxref=Genbank:WP_038270471.1;Name=WP_038270471.1;Ontology_term=GO:0042254,GO:0004540,GO:0046872;gbkey=CDS;gene=ybeY;go_function=ribonuclease activity|0004540||IEA,metal ion binding|0046872||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571323.1;locus_tag=LPH39_RS03780;product=rRNA maturation RNase YbeY;protein_id=WP_038270471.1;transl_table=11 NZ_CP087677.1 RefSeq gene 919505 920020 . + . ID=gene-LPH39_RS03785;Name=LPH39_RS03785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03785;old_locus_tag=LPH39_03785 NZ_CP087677.1 Protein Homology CDS 919505 920020 . + 0 ID=cds-WP_038270470.1;Parent=gene-LPH39_RS03785;Dbxref=Genbank:WP_038270470.1;Name=WP_038270470.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851567.1;locus_tag=LPH39_RS03785;product=hypothetical protein;protein_id=WP_038270470.1;transl_table=11 NZ_CP087677.1 RefSeq gene 920119 921000 . + . ID=gene-LPH39_RS03790;Name=LPH39_RS03790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03790;old_locus_tag=LPH39_03790 NZ_CP087677.1 Protein Homology CDS 920119 921000 . + 0 ID=cds-WP_038270469.1;Parent=gene-LPH39_RS03790;Dbxref=Genbank:WP_038270469.1;Name=WP_038270469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488337.1;locus_tag=LPH39_RS03790;product=HlyC/CorC family transporter;protein_id=WP_038270469.1;transl_table=11 NZ_CP087677.1 RefSeq gene 921051 922223 . + . ID=gene-LPH39_RS03795;Name=LPH39_RS03795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03795;old_locus_tag=LPH39_03795 NZ_CP087677.1 Protein Homology CDS 921051 922223 . + 0 ID=cds-WP_230428299.1;Parent=gene-LPH39_RS03795;Dbxref=Genbank:WP_230428299.1;Name=WP_230428299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851565.1;locus_tag=LPH39_RS03795;product=DUF4105 domain-containing protein;protein_id=WP_230428299.1;transl_table=11 NZ_CP087677.1 RefSeq gene 922220 923233 . + . ID=gene-LPH39_RS03800;Name=LPH39_RS03800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03800;old_locus_tag=LPH39_03800 NZ_CP087677.1 Protein Homology CDS 922220 923233 . + 0 ID=cds-WP_038270467.1;Parent=gene-LPH39_RS03800;Dbxref=Genbank:WP_038270467.1;Name=WP_038270467.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893420.1;locus_tag=LPH39_RS03800;product=magnesium and cobalt transport protein CorA;protein_id=WP_038270467.1;transl_table=11 NZ_CP087677.1 RefSeq gene 923694 924206 . + . ID=gene-LPH39_RS03805;Name=LPH39_RS03805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03805;old_locus_tag=LPH39_03805 NZ_CP087677.1 GeneMarkS-2+ CDS 923694 924206 . + 0 ID=cds-WP_230428245.1;Parent=gene-LPH39_RS03805;Dbxref=Genbank:WP_230428245.1;Name=WP_230428245.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03805;product=hypothetical protein;protein_id=WP_230428245.1;transl_table=11 NZ_CP087677.1 RefSeq gene 924592 925410 . - . ID=gene-LPH39_RS03810;Name=LPH39_RS03810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03810;old_locus_tag=LPH39_03810 NZ_CP087677.1 Protein Homology CDS 924592 925410 . - 0 ID=cds-WP_038270465.1;Parent=gene-LPH39_RS03810;Dbxref=Genbank:WP_038270465.1;Name=WP_038270465.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098252.1;locus_tag=LPH39_RS03810;product=DUF769 domain-containing protein;protein_id=WP_038270465.1;transl_table=11 NZ_CP087677.1 RefSeq gene 925419 926237 . - . ID=gene-LPH39_RS03815;Name=LPH39_RS03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03815;old_locus_tag=LPH39_03815 NZ_CP087677.1 Protein Homology CDS 925419 926237 . - 0 ID=cds-WP_038270464.1;Parent=gene-LPH39_RS03815;Dbxref=Genbank:WP_038270464.1;Name=WP_038270464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089585.1;locus_tag=LPH39_RS03815;product=DUF769 domain-containing protein;protein_id=WP_038270464.1;transl_table=11 NZ_CP087677.1 RefSeq gene 926243 934831 . - . ID=gene-LPH39_RS03820;Name=LPH39_RS03820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03820;old_locus_tag=LPH39_03820 NZ_CP087677.1 Protein Homology CDS 926243 934831 . - 0 ID=cds-WP_171898062.1;Parent=gene-LPH39_RS03820;Dbxref=Genbank:WP_171898062.1;Name=WP_171898062.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024728.2;locus_tag=LPH39_RS03820;product=hemagglutinin repeat-containing protein;protein_id=WP_171898062.1;transl_table=11 NZ_CP087677.1 RefSeq gene 934791 936161 . - . ID=gene-LPH39_RS03825;Name=LPH39_RS03825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03825;old_locus_tag=LPH39_03825 NZ_CP087677.1 Protein Homology CDS 934791 936161 . - 0 ID=cds-WP_171898063.1;Parent=gene-LPH39_RS03825;Dbxref=Genbank:WP_171898063.1;Name=WP_171898063.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017658.2;locus_tag=LPH39_RS03825;product=filamentous hemagglutinin N-terminal domain-containing protein;protein_id=WP_171898063.1;transl_table=11 NZ_CP087677.1 RefSeq gene 936185 937927 . - . ID=gene-LPH39_RS03830;Name=LPH39_RS03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03830;old_locus_tag=LPH39_03830 NZ_CP087677.1 Protein Homology CDS 936185 937927 . - 0 ID=cds-WP_038272757.1;Parent=gene-LPH39_RS03830;Dbxref=Genbank:WP_038272757.1;Name=WP_038272757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382766.1;locus_tag=LPH39_RS03830;product=ShlB/FhaC/HecB family hemolysin secretion/activation protein;protein_id=WP_038272757.1;transl_table=11 NZ_CP087677.1 RefSeq gene 938861 941323 . - . ID=gene-LPH39_RS03835;Name=LPH39_RS03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03835;old_locus_tag=LPH39_03835 NZ_CP087677.1 Protein Homology CDS 938861 941323 . - 0 ID=cds-WP_051482380.1;Parent=gene-LPH39_RS03835;Dbxref=Genbank:WP_051482380.1;Name=WP_051482380.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116881.1;locus_tag=LPH39_RS03835;product=prolyl oligopeptidase family serine peptidase;protein_id=WP_051482380.1;transl_table=11 NZ_CP087677.1 RefSeq gene 941571 944291 . - . ID=gene-LPH39_RS03840;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=LPH39_RS03840;old_locus_tag=LPH39_03840 NZ_CP087677.1 Protein Homology CDS 941571 944291 . - 0 ID=cds-WP_038272755.1;Parent=gene-LPH39_RS03840;Dbxref=Genbank:WP_038272755.1;Name=WP_038272755.1;Ontology_term=GO:0006259,GO:0006265,GO:0003677,GO:0003916,GO:0003918,GO:0005524;gbkey=CDS;gene=gyrA;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA metabolic process|0006259||IEA,DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851247.1;locus_tag=LPH39_RS03840;product=DNA gyrase subunit A;protein_id=WP_038272755.1;transl_table=11 NZ_CP087677.1 RefSeq gene 944492 945556 . - . ID=gene-LPH39_RS03845;Name=mtnA;gbkey=Gene;gene=mtnA;gene_biotype=protein_coding;locus_tag=LPH39_RS03845;old_locus_tag=LPH39_03845 NZ_CP087677.1 Protein Homology CDS 944492 945556 . - 0 ID=cds-WP_038272761.1;Parent=gene-LPH39_RS03845;Dbxref=Genbank:WP_038272761.1;Name=WP_038272761.1;Ontology_term=GO:0019509,GO:0046523;gbkey=CDS;gene=mtnA;go_function=S-methyl-5-thioribose-1-phosphate isomerase activity|0046523||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051043.1;locus_tag=LPH39_RS03845;product=S-methyl-5-thioribose-1-phosphate isomerase;protein_id=WP_038272761.1;transl_table=11 NZ_CP087677.1 RefSeq gene 945701 946381 . - . ID=gene-LPH39_RS03850;Name=LPH39_RS03850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03850;old_locus_tag=LPH39_03850 NZ_CP087677.1 Protein Homology CDS 945701 946381 . - 0 ID=cds-WP_069636222.1;Parent=gene-LPH39_RS03850;Dbxref=Genbank:WP_069636222.1;Name=WP_069636222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894975.1;locus_tag=LPH39_RS03850;product=DUF3011 domain-containing protein;protein_id=WP_069636222.1;transl_table=11 NZ_CP087677.1 RefSeq gene 946582 947532 . - . ID=gene-LPH39_RS03855;Name=epmA;gbkey=Gene;gene=epmA;gene_biotype=protein_coding;locus_tag=LPH39_RS03855;old_locus_tag=LPH39_03855 NZ_CP087677.1 Protein Homology CDS 946582 947532 . - 0 ID=cds-WP_114867184.1;Parent=gene-LPH39_RS03855;Dbxref=Genbank:WP_114867184.1;Name=WP_114867184.1;Ontology_term=GO:0006430,GO:0000166,GO:0004824,GO:0005524;gbkey=CDS;gene=epmA;go_function=nucleotide binding|0000166||IEA,lysine-tRNA ligase activity|0004824||IEA,ATP binding|0005524||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084622.1;locus_tag=LPH39_RS03855;product=EF-P lysine aminoacylase EpmA;protein_id=WP_114867184.1;transl_table=11 NZ_CP087677.1 RefSeq gene 947529 948002 . - . ID=gene-LPH39_RS03860;Name=LPH39_RS03860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03860;old_locus_tag=LPH39_03860 NZ_CP087677.1 Protein Homology CDS 947529 948002 . - 0 ID=cds-WP_038272751.1;Parent=gene-LPH39_RS03860;Dbxref=Genbank:WP_038272751.1;Name=WP_038272751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338106.1;locus_tag=LPH39_RS03860;product=GNAT family N-acetyltransferase;protein_id=WP_038272751.1;transl_table=11 NZ_CP087677.1 RefSeq gene 948013 950508 . - . ID=gene-LPH39_RS03865;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=LPH39_RS03865;old_locus_tag=LPH39_03865 NZ_CP087677.1 Protein Homology CDS 948013 950508 . - 0 ID=cds-WP_038272750.1;Parent=gene-LPH39_RS03865;Dbxref=Genbank:WP_038272750.1;Name=WP_038272750.1;Ontology_term=GO:0006260,GO:0006281,GO:0003677,GO:0003911;gbkey=CDS;gene=ligA;go_function=DNA binding|0003677||IEA,DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090351.1;locus_tag=LPH39_RS03865;product=NAD-dependent DNA ligase LigA;protein_id=WP_038272750.1;transl_table=11 NZ_CP087677.1 RefSeq gene 951269 951499 . - . ID=gene-LPH39_RS03870;Name=LPH39_RS03870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03870;old_locus_tag=LPH39_03870 NZ_CP087677.1 GeneMarkS-2+ CDS 951269 951499 . - 0 ID=cds-WP_038272749.1;Parent=gene-LPH39_RS03870;Dbxref=Genbank:WP_038272749.1;Name=WP_038272749.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03870;product=hypothetical protein;protein_id=WP_038272749.1;transl_table=11 NZ_CP087677.1 RefSeq gene 951766 952497 . - . ID=gene-LPH39_RS03875;Name=zipA;gbkey=Gene;gene=zipA;gene_biotype=protein_coding;locus_tag=LPH39_RS03875;old_locus_tag=LPH39_03875 NZ_CP087677.1 Protein Homology CDS 951766 952497 . - 0 ID=cds-WP_038272747.1;Parent=gene-LPH39_RS03875;Dbxref=Genbank:WP_038272747.1;Name=WP_038272747.1;Ontology_term=GO:0000917,GO:0005515;gbkey=CDS;gene=zipA;go_function=protein binding|0005515||IEA;go_process=division septum assembly|0000917||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903841.1;locus_tag=LPH39_RS03875;product=cell division protein ZipA;protein_id=WP_038272747.1;transl_table=11 NZ_CP087677.1 RefSeq gene 952555 956058 . - . ID=gene-LPH39_RS03880;Name=smc;gbkey=Gene;gene=smc;gene_biotype=protein_coding;locus_tag=LPH39_RS03880;old_locus_tag=LPH39_03880 NZ_CP087677.1 Protein Homology CDS 952555 956058 . - 0 ID=cds-WP_114867185.1;Parent=gene-LPH39_RS03880;Dbxref=Genbank:WP_114867185.1;Name=WP_114867185.1;Ontology_term=GO:0007059,GO:0030261,GO:0005524;gbkey=CDS;gene=smc;go_function=ATP binding|0005524||IEA;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084630.1;locus_tag=LPH39_RS03880;product=chromosome segregation protein SMC;protein_id=WP_114867185.1;transl_table=11 NZ_CP087677.1 RefSeq gene 956275 956724 . - . ID=gene-LPH39_RS03885;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=LPH39_RS03885;old_locus_tag=LPH39_03885 NZ_CP087677.1 Protein Homology CDS 956275 956724 . - 0 ID=cds-WP_038271671.1;Parent=gene-LPH39_RS03885;Dbxref=Genbank:WP_038271671.1;Name=WP_038271671.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplI;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014160531.1;locus_tag=LPH39_RS03885;product=50S ribosomal protein L9;protein_id=WP_038271671.1;transl_table=11 NZ_CP087677.1 RefSeq gene 956879 957109 . - . ID=gene-LPH39_RS03890;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=LPH39_RS03890;old_locus_tag=LPH39_03890 NZ_CP087677.1 Protein Homology CDS 956879 957109 . - 0 ID=cds-WP_038271673.1;Parent=gene-LPH39_RS03890;Dbxref=Genbank:WP_038271673.1;Name=WP_038271673.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsR;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804494.1;locus_tag=LPH39_RS03890;product=30S ribosomal protein S18;protein_id=WP_038271673.1;transl_table=11 NZ_CP087677.1 RefSeq gene 957122 957553 . - . ID=gene-LPH39_RS03895;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=LPH39_RS03895;old_locus_tag=LPH39_03895 NZ_CP087677.1 Protein Homology CDS 957122 957553 . - 0 ID=cds-WP_038271676.1;Parent=gene-LPH39_RS03895;Dbxref=Genbank:WP_038271676.1;Name=WP_038271676.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsF;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090345.1;locus_tag=LPH39_RS03895;product=30S ribosomal protein S6;protein_id=WP_038271676.1;transl_table=11 NZ_CP087677.1 RefSeq gene 957779 958117 . - . ID=gene-LPH39_RS03900;Name=LPH39_RS03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03900;old_locus_tag=LPH39_03900 NZ_CP087677.1 Protein Homology CDS 957779 958117 . - 0 ID=cds-WP_038271677.1;Parent=gene-LPH39_RS03900;Dbxref=Genbank:WP_038271677.1;Name=WP_038271677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660371.1;locus_tag=LPH39_RS03900;product=iron-sulfur cluster assembly accessory protein;protein_id=WP_038271677.1;transl_table=11 NZ_CP087677.1 RefSeq gene 958336 959736 . + . ID=gene-LPH39_RS03905;Name=asnS;gbkey=Gene;gene=asnS;gene_biotype=protein_coding;locus_tag=LPH39_RS03905;old_locus_tag=LPH39_03905 NZ_CP087677.1 Protein Homology CDS 958336 959736 . + 0 ID=cds-WP_038271678.1;Parent=gene-LPH39_RS03905;Dbxref=Genbank:WP_038271678.1;Name=WP_038271678.1;Ontology_term=GO:0006421,GO:0004816,GO:0005524;gbkey=CDS;gene=asnS;go_function=asparagine-tRNA ligase activity|0004816||IEA,ATP binding|0005524||IEA;go_process=asparaginyl-tRNA aminoacylation|0006421||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237793.1;locus_tag=LPH39_RS03905;product=asparagine--tRNA ligase;protein_id=WP_038271678.1;transl_table=11 NZ_CP087677.1 RefSeq gene 961105 961887 . + . ID=gene-LPH39_RS03910;Name=LPH39_RS03910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03910;old_locus_tag=LPH39_03910 NZ_CP087677.1 Protein Homology CDS 961105 961887 . + 0 ID=cds-WP_230428509.1;Parent=gene-LPH39_RS03910;Dbxref=Genbank:WP_230428509.1;Name=WP_230428509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607499.1;locus_tag=LPH39_RS03910;product=ABC transporter permease;protein_id=WP_230428509.1;transl_table=11 NZ_CP087677.1 RefSeq gene 961897 962637 . + . ID=gene-LPH39_RS03915;Name=LPH39_RS03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03915;old_locus_tag=LPH39_03915 NZ_CP087677.1 Protein Homology CDS 961897 962637 . + 0 ID=cds-WP_038271683.1;Parent=gene-LPH39_RS03915;Dbxref=Genbank:WP_038271683.1;Name=WP_038271683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851969.1;locus_tag=LPH39_RS03915;product=ABC transporter ATP-binding protein;protein_id=WP_038271683.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 962975 963260 . + . ID=gene-LPH39_RS03920;Name=LPH39_RS03920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS03920;old_locus_tag=LPH39_03920;pseudo=true NZ_CP087677.1 Protein Homology CDS 962975 963260 . + 0 ID=cds-LPH39_RS03920;Parent=gene-LPH39_RS03920;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894989.1;locus_tag=LPH39_RS03920;product=DUF4190 domain-containing protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 963554 964609 . + . ID=gene-LPH39_RS03925;Name=LPH39_RS03925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03925;old_locus_tag=LPH39_03925 NZ_CP087677.1 Protein Homology CDS 963554 964609 . + 0 ID=cds-WP_038271686.1;Parent=gene-LPH39_RS03925;Dbxref=Genbank:WP_038271686.1;Name=WP_038271686.1;Ontology_term=GO:0006222,GO:0004152,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=dihydroorotate dehydrogenase activity|0004152||IEA;go_process=UMP biosynthetic process|0006222||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851254.1;locus_tag=LPH39_RS03925;product=quinone-dependent dihydroorotate dehydrogenase;protein_id=WP_038271686.1;transl_table=11 NZ_CP087677.1 RefSeq gene 964606 965661 . + . ID=gene-LPH39_RS03930;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=LPH39_RS03930;old_locus_tag=LPH39_03930 NZ_CP087677.1 Protein Homology CDS 964606 965661 . + 0 ID=cds-WP_038271688.1;Parent=gene-LPH39_RS03930;Dbxref=Genbank:WP_038271688.1;Name=WP_038271688.1;Ontology_term=GO:0008762,GO:0071949;gbkey=CDS;gene=murB;go_function=UDP-N-acetylmuramate dehydrogenase activity|0008762||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084645.1;locus_tag=LPH39_RS03930;product=UDP-N-acetylmuramate dehydrogenase;protein_id=WP_038271688.1;transl_table=11 NZ_CP087677.1 RefSeq gene 965655 966554 . + . ID=gene-LPH39_RS03935;Name=LPH39_RS03935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03935;old_locus_tag=LPH39_03935 NZ_CP087677.1 Protein Homology CDS 965655 966554 . + 0 ID=cds-WP_038271689.1;Parent=gene-LPH39_RS03935;Dbxref=Genbank:WP_038271689.1;Name=WP_038271689.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851255.1;locus_tag=LPH39_RS03935;product=DMT family transporter;protein_id=WP_038271689.1;transl_table=11 NZ_CP087677.1 RefSeq gene 966562 967266 . - . ID=gene-LPH39_RS03940;Name=LPH39_RS03940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03940;old_locus_tag=LPH39_03940 NZ_CP087677.1 Protein Homology CDS 966562 967266 . - 0 ID=cds-WP_038271691.1;Parent=gene-LPH39_RS03940;Dbxref=Genbank:WP_038271691.1;Name=WP_038271691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894993.1;locus_tag=LPH39_RS03940;product=phosphatase PAP2 family protein;protein_id=WP_038271691.1;transl_table=11 NZ_CP087677.1 RefSeq gene 967247 968512 . - . ID=gene-LPH39_RS03945;Name=ispG;gbkey=Gene;gene=ispG;gene_biotype=protein_coding;gene_synonym=gcpE;locus_tag=LPH39_RS03945;old_locus_tag=LPH39_03945 NZ_CP087677.1 Protein Homology CDS 967247 968512 . - 0 ID=cds-WP_038271693.1;Parent=gene-LPH39_RS03945;Dbxref=Genbank:WP_038271693.1;Name=WP_038271693.1;Ontology_term=GO:0044237,GO:0046429;gbkey=CDS;gene=ispG;go_function=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|0046429||IEA;go_process=cellular metabolic process|0044237||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183267.1;locus_tag=LPH39_RS03945;product=flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase;protein_id=WP_038271693.1;transl_table=11 NZ_CP087677.1 RefSeq gene 968735 969952 . + . ID=gene-LPH39_RS03950;Name=LPH39_RS03950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03950;old_locus_tag=LPH39_03950 NZ_CP087677.1 Protein Homology CDS 968735 969952 . + 0 ID=cds-WP_038271694.1;Parent=gene-LPH39_RS03950;Dbxref=Genbank:WP_038271694.1;Name=WP_038271694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894996.1;locus_tag=LPH39_RS03950;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_038271694.1;transl_table=11 NZ_CP087677.1 RefSeq gene 969949 970527 . + . ID=gene-LPH39_RS03955;Name=LPH39_RS03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03955;old_locus_tag=LPH39_03955 NZ_CP087677.1 Protein Homology CDS 969949 970527 . + 0 ID=cds-WP_038271696.1;Parent=gene-LPH39_RS03955;Dbxref=Genbank:WP_038271696.1;Name=WP_038271696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090324.1;locus_tag=LPH39_RS03955;product=response regulator transcription factor;protein_id=WP_038271696.1;transl_table=11 NZ_CP087677.1 RefSeq gene 971081 971959 . - . ID=gene-LPH39_RS03960;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=LPH39_RS03960;old_locus_tag=LPH39_03960 NZ_CP087677.1 Protein Homology CDS 971081 971959 . - 0 ID=cds-WP_038271698.1;Parent=gene-LPH39_RS03960;Dbxref=Genbank:WP_038271698.1;Name=WP_038271698.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tsf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962895.1;locus_tag=LPH39_RS03960;product=translation elongation factor Ts;protein_id=WP_038271698.1;transl_table=11 NZ_CP087677.1 RefSeq gene 972152 972949 . - . ID=gene-LPH39_RS03965;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=LPH39_RS03965;old_locus_tag=LPH39_03965 NZ_CP087677.1 Protein Homology CDS 972152 972949 . - 0 ID=cds-WP_038271700.1;Parent=gene-LPH39_RS03965;Dbxref=Genbank:WP_038271700.1;Name=WP_038271700.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsB;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084652.1;locus_tag=LPH39_RS03965;product=30S ribosomal protein S2;protein_id=WP_038271700.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 973427 973579 . + . ID=gene-LPH39_RS03970;Name=LPH39_RS03970;end_range=973579,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS03970;old_locus_tag=LPH39_03970;partial=true;pseudo=true;start_range=.,973427 NZ_CP087677.1 Protein Homology CDS 973427 973579 . + 0 ID=cds-LPH39_RS03970;Parent=gene-LPH39_RS03970;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=973579,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LPH39_RS03970;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,973427;transl_table=11 NZ_CP087677.1 RefSeq gene 973882 973959 . + . ID=gene-LPH39_RS03975;Name=LPH39_RS03975;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS03975;old_locus_tag=LPH39_03975 NZ_CP087677.1 tRNAscan-SE tRNA 973882 973959 . + . ID=rna-LPH39_RS03975;Parent=gene-LPH39_RS03975;anticodon=(pos:973917..973919);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS03975;product=tRNA-Arg NZ_CP087677.1 tRNAscan-SE exon 973882 973959 . + . ID=exon-LPH39_RS03975-1;Parent=rna-LPH39_RS03975;anticodon=(pos:973917..973919);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS03975;product=tRNA-Arg NZ_CP087677.1 RefSeq gene 974382 976142 . + . ID=gene-LPH39_RS03980;Name=LPH39_RS03980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03980;old_locus_tag=LPH39_03980 NZ_CP087677.1 Protein Homology CDS 974382 976142 . + 0 ID=cds-WP_038271705.1;Parent=gene-LPH39_RS03980;Dbxref=Genbank:WP_038271705.1;Name=WP_038271705.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084653.1;locus_tag=LPH39_RS03980;product=ABC transporter ATP-binding protein/permease;protein_id=WP_038271705.1;transl_table=11 NZ_CP087677.1 RefSeq gene 976549 976761 . - . ID=gene-LPH39_RS03985;Name=LPH39_RS03985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03985;old_locus_tag=LPH39_03985 NZ_CP087677.1 GeneMarkS-2+ CDS 976549 976761 . - 0 ID=cds-WP_038271708.1;Parent=gene-LPH39_RS03985;Dbxref=Genbank:WP_038271708.1;Name=WP_038271708.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03985;product=hypothetical protein;protein_id=WP_038271708.1;transl_table=11 NZ_CP087677.1 RefSeq gene 977426 977632 . + . ID=gene-LPH39_RS03990;Name=LPH39_RS03990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03990;old_locus_tag=LPH39_03990 NZ_CP087677.1 GeneMarkS-2+ CDS 977426 977632 . + 0 ID=cds-WP_038271710.1;Parent=gene-LPH39_RS03990;Dbxref=Genbank:WP_038271710.1;Name=WP_038271710.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS03990;product=hypothetical protein;protein_id=WP_038271710.1;transl_table=11 NZ_CP087677.1 RefSeq gene 978069 978725 . + . ID=gene-LPH39_RS03995;Name=LPH39_RS03995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS03995;old_locus_tag=LPH39_03995 NZ_CP087677.1 Protein Homology CDS 978069 978725 . + 0 ID=cds-WP_038271715.1;Parent=gene-LPH39_RS03995;Dbxref=Genbank:WP_038271715.1;Name=WP_038271715.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804883.1;locus_tag=LPH39_RS03995;product=protein-L-isoaspartate O-methyltransferase;protein_id=WP_038271715.1;transl_table=11 NZ_CP087677.1 RefSeq gene 978748 980106 . + . ID=gene-LPH39_RS04000;Name=LPH39_RS04000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04000;old_locus_tag=LPH39_04000 NZ_CP087677.1 Protein Homology CDS 978748 980106 . + 0 ID=cds-WP_038271718.1;Parent=gene-LPH39_RS04000;Dbxref=Genbank:WP_038271718.1;Name=WP_038271718.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852053.1;locus_tag=LPH39_RS04000;product=TolC family outer membrane protein;protein_id=WP_038271718.1;transl_table=11 NZ_CP087677.1 RefSeq gene 980856 981608 . - . ID=gene-LPH39_RS04005;Name=lpxH;gbkey=Gene;gene=lpxH;gene_biotype=protein_coding;locus_tag=LPH39_RS04005;old_locus_tag=LPH39_04005 NZ_CP087677.1 Protein Homology CDS 980856 981608 . - 0 ID=cds-WP_038271721.1;Parent=gene-LPH39_RS04005;Dbxref=Genbank:WP_038271721.1;Name=WP_038271721.1;Ontology_term=GO:0009245,GO:0008758;gbkey=CDS;gene=lpxH;go_function=UDP-2%2C3-diacylglucosamine hydrolase activity|0008758||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084656.1;locus_tag=LPH39_RS04005;product=UDP-2%2C3-diacylglucosamine diphosphatase;protein_id=WP_038271721.1;transl_table=11 NZ_CP087677.1 RefSeq gene 982714 984240 . - . ID=gene-LPH39_RS04010;Name=ppx;gbkey=Gene;gene=ppx;gene_biotype=protein_coding;locus_tag=LPH39_RS04010;old_locus_tag=LPH39_04010 NZ_CP087677.1 Protein Homology CDS 982714 984240 . - 0 ID=cds-WP_038271776.1;Parent=gene-LPH39_RS04010;Dbxref=Genbank:WP_038271776.1;Name=WP_038271776.1;Ontology_term=GO:0006798,GO:0000287,GO:0004309;gbkey=CDS;gene=ppx;go_function=magnesium ion binding|0000287||IEA,exopolyphosphatase activity|0004309||IEA;go_process=polyphosphate catabolic process|0006798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895008.1;locus_tag=LPH39_RS04010;product=exopolyphosphatase;protein_id=WP_038271776.1;transl_table=11 NZ_CP087677.1 RefSeq gene 984309 986405 . - . ID=gene-LPH39_RS04015;Name=ppk1;gbkey=Gene;gene=ppk1;gene_biotype=protein_coding;locus_tag=LPH39_RS04015;old_locus_tag=LPH39_04015 NZ_CP087677.1 Protein Homology CDS 984309 986405 . - 0 ID=cds-WP_160199336.1;Parent=gene-LPH39_RS04015;Dbxref=Genbank:WP_160199336.1;Name=WP_160199336.1;Ontology_term=GO:0006799,GO:0008976,GO:0009358;gbkey=CDS;gene=ppk1;go_component=polyphosphate kinase complex|0009358||IEA;go_function=polyphosphate kinase activity|0008976||IEA;go_process=polyphosphate biosynthetic process|0006799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895009.1;locus_tag=LPH39_RS04015;product=polyphosphate kinase 1;protein_id=WP_160199336.1;transl_table=11 NZ_CP087677.1 RefSeq gene 986510 987784 . - . ID=gene-LPH39_RS04020;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=LPH39_RS04020;old_locus_tag=LPH39_04020 NZ_CP087677.1 Protein Homology CDS 986510 987784 . - 0 ID=cds-WP_230428300.1;Parent=gene-LPH39_RS04020;Dbxref=Genbank:WP_230428300.1;Name=WP_230428300.1;Ontology_term=GO:0000160,GO:0006796,GO:0000155;gbkey=CDS;gene=phoR;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852050.1;locus_tag=LPH39_RS04020;product=phosphate regulon sensor histidine kinase PhoR;protein_id=WP_230428300.1;transl_table=11 NZ_CP087677.1 RefSeq gene 987877 988566 . - . ID=gene-LPH39_RS04025;Name=phoB;gbkey=Gene;gene=phoB;gene_biotype=protein_coding;locus_tag=LPH39_RS04025;old_locus_tag=LPH39_04025 NZ_CP087677.1 Protein Homology CDS 987877 988566 . - 0 ID=cds-WP_038271729.1;Parent=gene-LPH39_RS04025;Dbxref=Genbank:WP_038271729.1;Name=WP_038271729.1;Ontology_term=GO:0000160,GO:0006355,GO:0006796,GO:0000156,GO:0003700;gbkey=CDS;gene=phoB;go_function=phosphorelay response regulator activity|0000156||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341114.1;locus_tag=LPH39_RS04025;product=phosphate regulon transcriptional regulator PhoB;protein_id=WP_038271729.1;transl_table=11 NZ_CP087677.1 RefSeq gene 988648 990282 . - . ID=gene-LPH39_RS04030;Name=LPH39_RS04030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04030;old_locus_tag=LPH39_04030 NZ_CP087677.1 Protein Homology CDS 988648 990282 . - 0 ID=cds-WP_038271732.1;Parent=gene-LPH39_RS04030;Dbxref=Genbank:WP_038271732.1;Name=WP_038271732.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098320.1;locus_tag=LPH39_RS04030;product=M48 family metalloprotease;protein_id=WP_038271732.1;transl_table=11 NZ_CP087677.1 RefSeq gene 990403 990708 . + . ID=gene-LPH39_RS04035;Name=grxC;gbkey=Gene;gene=grxC;gene_biotype=protein_coding;locus_tag=LPH39_RS04035;old_locus_tag=LPH39_04035 NZ_CP087677.1 Protein Homology CDS 990403 990708 . + 0 ID=cds-WP_038271736.1;Parent=gene-LPH39_RS04035;Dbxref=Genbank:WP_038271736.1;Name=WP_038271736.1;Ontology_term=GO:0015036;gbkey=CDS;gene=grxC;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084662.1;locus_tag=LPH39_RS04035;product=glutaredoxin 3;protein_id=WP_038271736.1;transl_table=11 NZ_CP087677.1 RefSeq gene 991595 992602 . + . ID=gene-LPH39_RS04040;Name=LPH39_RS04040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04040;old_locus_tag=LPH39_04040 NZ_CP087677.1 Protein Homology CDS 991595 992602 . + 0 ID=cds-WP_038271738.1;Parent=gene-LPH39_RS04040;Dbxref=Genbank:WP_038271738.1;Name=WP_038271738.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852046.1;locus_tag=LPH39_RS04040;product=isocitrate dehydrogenase;protein_id=WP_038271738.1;transl_table=11 NZ_CP087677.1 RefSeq gene 993011 993577 . - . ID=gene-LPH39_RS04045;Name=LPH39_RS04045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04045;old_locus_tag=LPH39_04045 NZ_CP087677.1 Protein Homology CDS 993011 993577 . - 0 ID=cds-WP_038271778.1;Parent=gene-LPH39_RS04045;Dbxref=Genbank:WP_038271778.1;Name=WP_038271778.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084664.1;locus_tag=LPH39_RS04045;product=DUF4019 domain-containing protein;protein_id=WP_038271778.1;transl_table=11 NZ_CP087677.1 RefSeq gene 994568 995086 . + . ID=gene-LPH39_RS04050;Name=LPH39_RS04050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04050;old_locus_tag=LPH39_04050 NZ_CP087677.1 Protein Homology CDS 994568 995086 . + 0 ID=cds-WP_038271739.1;Parent=gene-LPH39_RS04050;Dbxref=Genbank:WP_038271739.1;Name=WP_038271739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087533.1;locus_tag=LPH39_RS04050;product=methylated-DNA--[protein]-cysteine S-methyltransferase;protein_id=WP_038271739.1;transl_table=11 NZ_CP087677.1 RefSeq gene 995115 996416 . + . ID=gene-LPH39_RS04055;Name=LPH39_RS04055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04055;old_locus_tag=LPH39_04055 NZ_CP087677.1 Protein Homology CDS 995115 996416 . + 0 ID=cds-WP_038271742.1;Parent=gene-LPH39_RS04055;Dbxref=Genbank:WP_038271742.1;Name=WP_038271742.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087534.1;locus_tag=LPH39_RS04055;product=ectonucleotide pyrophosphatase/phosphodiesterase;protein_id=WP_038271742.1;transl_table=11 NZ_CP087677.1 RefSeq gene 996736 997059 . + . ID=gene-LPH39_RS04060;Name=LPH39_RS04060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04060;old_locus_tag=LPH39_04060 NZ_CP087677.1 Protein Homology CDS 996736 997059 . + 0 ID=cds-WP_081755460.1;Parent=gene-LPH39_RS04060;Dbxref=Genbank:WP_081755460.1;Name=WP_081755460.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994928.1;locus_tag=LPH39_RS04060;product=ferredoxin family protein;protein_id=WP_081755460.1;transl_table=11 NZ_CP087677.1 RefSeq gene 997694 999181 . - . ID=gene-LPH39_RS04065;Name=LPH39_RS04065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04065;old_locus_tag=LPH39_04065 NZ_CP087677.1 Protein Homology CDS 997694 999181 . - 0 ID=cds-WP_038271747.1;Parent=gene-LPH39_RS04065;Dbxref=Genbank:WP_038271747.1;Name=WP_038271747.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852042.1;locus_tag=LPH39_RS04065;product=hypothetical protein;protein_id=WP_038271747.1;transl_table=11 NZ_CP087677.1 RefSeq gene 999300 999899 . - . ID=gene-LPH39_RS04070;Name=LPH39_RS04070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04070;old_locus_tag=LPH39_04070 NZ_CP087677.1 Protein Homology CDS 999300 999899 . - 0 ID=cds-WP_038271749.1;Parent=gene-LPH39_RS04070;Dbxref=Genbank:WP_038271749.1;Name=WP_038271749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410314.1;locus_tag=LPH39_RS04070;product=NfuA family Fe-S biogenesis protein;protein_id=WP_038271749.1;transl_table=11 NZ_CP087677.1 RefSeq gene 999985 1000335 . + . ID=gene-LPH39_RS04075;Name=LPH39_RS04075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04075;old_locus_tag=LPH39_04075 NZ_CP087677.1 Protein Homology CDS 999985 1000335 . + 0 ID=cds-WP_038271751.1;Parent=gene-LPH39_RS04075;Dbxref=Genbank:WP_038271751.1;Name=WP_038271751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087537.1;locus_tag=LPH39_RS04075;product=4a-hydroxytetrahydrobiopterin dehydratase;protein_id=WP_038271751.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1000343 1000756 . + . ID=gene-LPH39_RS04080;Name=LPH39_RS04080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04080;old_locus_tag=LPH39_04080 NZ_CP087677.1 Protein Homology CDS 1000343 1000756 . + 0 ID=cds-WP_038271753.1;Parent=gene-LPH39_RS04080;Dbxref=Genbank:WP_038271753.1;Name=WP_038271753.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338113.1;locus_tag=LPH39_RS04080;product=energy transducer TonB;protein_id=WP_038271753.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1001028 1001213 . + . ID=gene-LPH39_RS04085;Name=LPH39_RS04085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04085;old_locus_tag=LPH39_04085 NZ_CP087677.1 GeneMarkS-2+ CDS 1001028 1001213 . + 0 ID=cds-WP_081755461.1;Parent=gene-LPH39_RS04085;Dbxref=Genbank:WP_081755461.1;Name=WP_081755461.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04085;product=hypothetical protein;protein_id=WP_081755461.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1001727 1002719 . - . ID=gene-LPH39_RS04090;Name=LPH39_RS04090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04090;old_locus_tag=LPH39_04090 NZ_CP087677.1 Protein Homology CDS 1001727 1002719 . - 0 ID=cds-WP_051482353.1;Parent=gene-LPH39_RS04090;Dbxref=Genbank:WP_051482353.1;Name=WP_051482353.1;Ontology_term=GO:0001522,GO:0009451,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852040.1;locus_tag=LPH39_RS04090;product=RluA family pseudouridine synthase;protein_id=WP_051482353.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1003121 1006525 . + . ID=gene-LPH39_RS04095;Name=LPH39_RS04095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04095;old_locus_tag=LPH39_04095 NZ_CP087677.1 Protein Homology CDS 1003121 1006525 . + 0 ID=cds-WP_038271755.1;Parent=gene-LPH39_RS04095;Dbxref=Genbank:WP_038271755.1;Name=WP_038271755.1;Ontology_term=GO:0006401,GO:0004540;gbkey=CDS;go_function=ribonuclease activity|0004540||IEA;go_process=RNA catabolic process|0006401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895025.1;locus_tag=LPH39_RS04095;product=Rne/Rng family ribonuclease;protein_id=WP_038271755.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1007230 1007877 . - . ID=gene-LPH39_RS04100;Name=LPH39_RS04100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04100;old_locus_tag=LPH39_04100 NZ_CP087677.1 Protein Homology CDS 1007230 1007877 . - 0 ID=cds-WP_038271757.1;Parent=gene-LPH39_RS04100;Dbxref=Genbank:WP_038271757.1;Name=WP_038271757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408972.1;locus_tag=LPH39_RS04100;product=response regulator transcription factor;protein_id=WP_038271757.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1008144 1008902 . - . ID=gene-LPH39_RS04105;Name=LPH39_RS04105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04105;old_locus_tag=LPH39_04105 NZ_CP087677.1 Protein Homology CDS 1008144 1008902 . - 0 ID=cds-WP_038271783.1;Parent=gene-LPH39_RS04105;Dbxref=Genbank:WP_038271783.1;Name=WP_038271783.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031337128.1;locus_tag=LPH39_RS04105;product=sulfurtransferase;protein_id=WP_038271783.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1010584 1010982 . + . ID=gene-LPH39_RS04110;Name=LPH39_RS04110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04110;old_locus_tag=LPH39_04110 NZ_CP087677.1 Protein Homology CDS 1010584 1010982 . + 0 ID=cds-WP_038271784.1;Parent=gene-LPH39_RS04110;Dbxref=Genbank:WP_038271784.1;Name=WP_038271784.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338114.1;locus_tag=LPH39_RS04110;product=response regulator;protein_id=WP_038271784.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1012344 1012955 . - . ID=gene-LPH39_RS04115;Name=LPH39_RS04115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04115;old_locus_tag=LPH39_04115 NZ_CP087677.1 Protein Homology CDS 1012344 1012955 . - 0 ID=cds-WP_038271760.1;Parent=gene-LPH39_RS04115;Dbxref=Genbank:WP_038271760.1;Name=WP_038271760.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037422.1;locus_tag=LPH39_RS04115;product=superoxide dismutase;protein_id=WP_038271760.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1013213 1013647 . + . ID=gene-LPH39_RS04120;Name=LPH39_RS04120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04120;old_locus_tag=LPH39_04120 NZ_CP087677.1 Protein Homology CDS 1013213 1013647 . + 0 ID=cds-WP_038271763.1;Parent=gene-LPH39_RS04120;Dbxref=Genbank:WP_038271763.1;Name=WP_038271763.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450339.1;locus_tag=LPH39_RS04120;product=ribonuclease;protein_id=WP_038271763.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1013644 1014060 . + . ID=gene-LPH39_RS04125;Name=LPH39_RS04125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04125;old_locus_tag=LPH39_04125 NZ_CP087677.1 Protein Homology CDS 1013644 1014060 . + 0 ID=cds-WP_038271765.1;Parent=gene-LPH39_RS04125;Dbxref=Genbank:WP_038271765.1;Name=WP_038271765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852034.1;locus_tag=LPH39_RS04125;product=barstar family protein;protein_id=WP_038271765.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1014116 1015987 . - . ID=gene-LPH39_RS04130;Name=LPH39_RS04130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04130;old_locus_tag=LPH39_04130 NZ_CP087677.1 Protein Homology CDS 1014116 1015987 . - 0 ID=cds-WP_038271767.1;Parent=gene-LPH39_RS04130;Dbxref=Genbank:WP_038271767.1;Name=WP_038271767.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923190.1;locus_tag=LPH39_RS04130;product=ATP-binding cassette domain-containing protein;protein_id=WP_038271767.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1016295 1017854 . - . ID=gene-LPH39_RS04135;Name=LPH39_RS04135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04135;old_locus_tag=LPH39_04135 NZ_CP087677.1 Protein Homology CDS 1016295 1017854 . - 0 ID=cds-WP_038271785.1;Parent=gene-LPH39_RS04135;Dbxref=Genbank:WP_038271785.1;Name=WP_038271785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098324.1;locus_tag=LPH39_RS04135;product=YdiU family protein;protein_id=WP_038271785.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1018253 1018465 . - . ID=gene-LPH39_RS04140;Name=LPH39_RS04140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04140;old_locus_tag=LPH39_04140 NZ_CP087677.1 Protein Homology CDS 1018253 1018465 . - 0 ID=cds-WP_038271770.1;Parent=gene-LPH39_RS04140;Dbxref=Genbank:WP_038271770.1;Name=WP_038271770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913053.1;locus_tag=LPH39_RS04140;product=cold-shock protein;protein_id=WP_038271770.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1019987 1022059 . + . ID=gene-LPH39_RS04145;Name=LPH39_RS04145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04145;old_locus_tag=LPH39_04145 NZ_CP087677.1 Protein Homology CDS 1019987 1022059 . + 0 ID=cds-WP_038271772.1;Parent=gene-LPH39_RS04145;Dbxref=Genbank:WP_038271772.1;Name=WP_038271772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895041.1;locus_tag=LPH39_RS04145;product=EAL domain-containing protein;protein_id=WP_038271772.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1022449 1023318 . - . ID=gene-LPH39_RS04150;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;locus_tag=LPH39_RS04150;old_locus_tag=LPH39_04150 NZ_CP087677.1 Protein Homology CDS 1022449 1023318 . - 0 ID=cds-WP_038271774.1;Parent=gene-LPH39_RS04150;Dbxref=Genbank:WP_038271774.1;Name=WP_038271774.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=htpX;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084683.1;locus_tag=LPH39_RS04150;product=protease HtpX;protein_id=WP_038271774.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1025119 1026309 . - . ID=gene-LPH39_RS04155;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=LPH39_RS04155;old_locus_tag=LPH39_04155 NZ_CP087677.1 Protein Homology CDS 1025119 1026309 . - 0 ID=cds-WP_038273292.1;Parent=gene-LPH39_RS04155;Dbxref=Genbank:WP_038273292.1;Name=WP_038273292.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486726.1;locus_tag=LPH39_RS04155;product=elongation factor Tu;protein_id=WP_038273292.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1026417 1028534 . - . ID=gene-LPH39_RS04160;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=LPH39_RS04160;old_locus_tag=LPH39_04160 NZ_CP087677.1 Protein Homology CDS 1026417 1028534 . - 0 ID=cds-WP_038272873.1;Parent=gene-LPH39_RS04160;Dbxref=Genbank:WP_038272873.1;Name=WP_038272873.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=fusA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895046.1;locus_tag=LPH39_RS04160;product=elongation factor G;protein_id=WP_038272873.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1028673 1029140 . - . ID=gene-LPH39_RS04165;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=LPH39_RS04165;old_locus_tag=LPH39_04165 NZ_CP087677.1 Protein Homology CDS 1028673 1029140 . - 0 ID=cds-WP_038272876.1;Parent=gene-LPH39_RS04165;Dbxref=Genbank:WP_038272876.1;Name=WP_038272876.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsG;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450629.1;locus_tag=LPH39_RS04165;product=30S ribosomal protein S7;protein_id=WP_038272876.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1029156 1029530 . - . ID=gene-LPH39_RS04170;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=LPH39_RS04170;old_locus_tag=LPH39_04170 NZ_CP087677.1 Protein Homology CDS 1029156 1029530 . - 0 ID=cds-WP_038272877.1;Parent=gene-LPH39_RS04170;Dbxref=Genbank:WP_038272877.1;Name=WP_038272877.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsL;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003469157.1;locus_tag=LPH39_RS04170;product=30S ribosomal protein S12;protein_id=WP_038272877.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1029775 1033998 . - . ID=gene-LPH39_RS04175;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=LPH39_RS04175;old_locus_tag=LPH39_04175 NZ_CP087677.1 Protein Homology CDS 1029775 1033998 . - 0 ID=cds-WP_038272879.1;Parent=gene-LPH39_RS04175;Dbxref=Genbank:WP_038272879.1;Name=WP_038272879.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoC;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031337137.1;locus_tag=LPH39_RS04175;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_038272879.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1034105 1038259 . - . ID=gene-LPH39_RS04180;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=LPH39_RS04180;old_locus_tag=LPH39_04180 NZ_CP087677.1 Protein Homology CDS 1034105 1038259 . - 0 ID=cds-WP_038272880.1;Parent=gene-LPH39_RS04180;Dbxref=Genbank:WP_038272880.1;Name=WP_038272880.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoB;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852081.1;locus_tag=LPH39_RS04180;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_038272880.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1038515 1038883 . - . ID=gene-LPH39_RS04185;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=LPH39_RS04185;old_locus_tag=LPH39_04185 NZ_CP087677.1 Protein Homology CDS 1038515 1038883 . - 0 ID=cds-WP_038272881.1;Parent=gene-LPH39_RS04185;Dbxref=Genbank:WP_038272881.1;Name=WP_038272881.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplL;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084690.1;locus_tag=LPH39_RS04185;product=50S ribosomal protein L7/L12;protein_id=WP_038272881.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1038938 1039465 . - . ID=gene-LPH39_RS04190;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=LPH39_RS04190;old_locus_tag=LPH39_04190 NZ_CP087677.1 Protein Homology CDS 1038938 1039465 . - 0 ID=cds-WP_038272883.1;Parent=gene-LPH39_RS04190;Dbxref=Genbank:WP_038272883.1;Name=WP_038272883.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplJ;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036116.1;locus_tag=LPH39_RS04190;product=50S ribosomal protein L10;protein_id=WP_038272883.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1039967 1040665 . - . ID=gene-LPH39_RS04195;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=LPH39_RS04195;old_locus_tag=LPH39_04195 NZ_CP087677.1 Protein Homology CDS 1039967 1040665 . - 0 ID=cds-WP_038272885.1;Parent=gene-LPH39_RS04195;Dbxref=Genbank:WP_038272885.1;Name=WP_038272885.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplA;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341341.1;locus_tag=LPH39_RS04195;product=50S ribosomal protein L1;protein_id=WP_038272885.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1040669 1041097 . - . ID=gene-LPH39_RS04200;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=LPH39_RS04200;old_locus_tag=LPH39_04200 NZ_CP087677.1 Protein Homology CDS 1040669 1041097 . - 0 ID=cds-WP_038272888.1;Parent=gene-LPH39_RS04200;Dbxref=Genbank:WP_038272888.1;Name=WP_038272888.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplK;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993334.1;locus_tag=LPH39_RS04200;product=50S ribosomal protein L11;protein_id=WP_038272888.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1041297 1041854 . - . ID=gene-LPH39_RS04205;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=LPH39_RS04205;old_locus_tag=LPH39_04205 NZ_CP087677.1 Protein Homology CDS 1041297 1041854 . - 0 ID=cds-WP_038272890.1;Parent=gene-LPH39_RS04205;Dbxref=Genbank:WP_038272890.1;Name=WP_038272890.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusG;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090734.1;locus_tag=LPH39_RS04205;product=transcription termination/antitermination protein NusG;protein_id=WP_038272890.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1041868 1042275 . - . ID=gene-LPH39_RS04210;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=LPH39_RS04210;old_locus_tag=LPH39_04210 NZ_CP087677.1 Protein Homology CDS 1041868 1042275 . - 0 ID=cds-WP_038272892.1;Parent=gene-LPH39_RS04210;Dbxref=Genbank:WP_038272892.1;Name=WP_038272892.1;gbkey=CDS;gene=secE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993330.1;locus_tag=LPH39_RS04210;product=preprotein translocase subunit SecE;protein_id=WP_038272892.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1042325 1042400 . - . ID=gene-LPH39_RS04215;Name=LPH39_RS04215;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS04215;old_locus_tag=LPH39_04215 NZ_CP087677.1 tRNAscan-SE tRNA 1042325 1042400 . - . ID=rna-LPH39_RS04215;Parent=gene-LPH39_RS04215;anticodon=(pos:complement(1042365..1042367));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04215;product=tRNA-Trp NZ_CP087677.1 tRNAscan-SE exon 1042325 1042400 . - . ID=exon-LPH39_RS04215-1;Parent=rna-LPH39_RS04215;anticodon=(pos:complement(1042365..1042367));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04215;product=tRNA-Trp NZ_CP087677.1 RefSeq gene 1042513 1043703 . - . ID=gene-LPH39_RS04220;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=LPH39_RS04220;old_locus_tag=LPH39_04220 NZ_CP087677.1 Protein Homology CDS 1042513 1043703 . - 0 ID=cds-WP_038273292.1-2;Parent=gene-LPH39_RS04220;Dbxref=Genbank:WP_038273292.1;Name=WP_038273292.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486726.1;locus_tag=LPH39_RS04220;product=elongation factor Tu;protein_id=WP_038273292.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1043744 1043819 . - . ID=gene-LPH39_RS04225;Name=LPH39_RS04225;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS04225;old_locus_tag=LPH39_04225 NZ_CP087677.1 tRNAscan-SE tRNA 1043744 1043819 . - . ID=rna-LPH39_RS04225;Parent=gene-LPH39_RS04225;anticodon=(pos:complement(1043784..1043786));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04225;product=tRNA-Thr NZ_CP087677.1 tRNAscan-SE exon 1043744 1043819 . - . ID=exon-LPH39_RS04225-1;Parent=rna-LPH39_RS04225;anticodon=(pos:complement(1043784..1043786));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04225;product=tRNA-Thr NZ_CP087677.1 RefSeq gene 1043854 1043927 . - . ID=gene-LPH39_RS04230;Name=LPH39_RS04230;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS04230;old_locus_tag=LPH39_04230 NZ_CP087677.1 tRNAscan-SE tRNA 1043854 1043927 . - . ID=rna-LPH39_RS04230;Parent=gene-LPH39_RS04230;anticodon=(pos:complement(1043893..1043895));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04230;product=tRNA-Gly NZ_CP087677.1 tRNAscan-SE exon 1043854 1043927 . - . ID=exon-LPH39_RS04230-1;Parent=rna-LPH39_RS04230;anticodon=(pos:complement(1043893..1043895));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04230;product=tRNA-Gly NZ_CP087677.1 RefSeq gene 1043962 1044048 . - . ID=gene-LPH39_RS04235;Name=LPH39_RS04235;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS04235;old_locus_tag=LPH39_04235 NZ_CP087677.1 tRNAscan-SE tRNA 1043962 1044048 . - . ID=rna-LPH39_RS04235;Parent=gene-LPH39_RS04235;anticodon=(pos:complement(1044012..1044014));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04235;product=tRNA-Tyr NZ_CP087677.1 tRNAscan-SE exon 1043962 1044048 . - . ID=exon-LPH39_RS04235-1;Parent=rna-LPH39_RS04235;anticodon=(pos:complement(1044012..1044014));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04235;product=tRNA-Tyr NZ_CP087677.1 RefSeq gene 1044242 1045333 . - . ID=gene-LPH39_RS04240;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=LPH39_RS04240;old_locus_tag=LPH39_04240 NZ_CP087677.1 Protein Homology CDS 1044242 1045333 . - 0 ID=cds-WP_038271278.1;Parent=gene-LPH39_RS04240;Dbxref=Genbank:WP_038271278.1;Name=WP_038271278.1;Ontology_term=GO:0005525;gbkey=CDS;gene=ychF;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000506572.1;locus_tag=LPH39_RS04240;product=redox-regulated ATPase YchF;protein_id=WP_038271278.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1045388 1045966 . - . ID=gene-LPH39_RS04245;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=LPH39_RS04245;old_locus_tag=LPH39_04245 NZ_CP087677.1 Protein Homology CDS 1045388 1045966 . - 0 ID=cds-WP_038271277.1;Parent=gene-LPH39_RS04245;Dbxref=Genbank:WP_038271277.1;Name=WP_038271277.1;Ontology_term=GO:0006412,GO:0004045;gbkey=CDS;gene=pth;go_function=aminoacyl-tRNA hydrolase activity|0004045||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084699.1;locus_tag=LPH39_RS04245;product=aminoacyl-tRNA hydrolase;protein_id=WP_038271277.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1046022 1046645 . - . ID=gene-LPH39_RS04250;Name=LPH39_RS04250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04250;old_locus_tag=LPH39_04250 NZ_CP087677.1 Protein Homology CDS 1046022 1046645 . - 0 ID=cds-WP_038271276.1;Parent=gene-LPH39_RS04250;Dbxref=Genbank:WP_038271276.1;Name=WP_038271276.1;Ontology_term=GO:0006412,GO:0003735,GO:0008097;gbkey=CDS;go_function=structural constituent of ribosome|0003735||IEA,5S rRNA binding|0008097||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087395.1;locus_tag=LPH39_RS04250;product=50S ribosomal protein L25/general stress protein Ctc;protein_id=WP_038271276.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1046751 1047710 . - . ID=gene-LPH39_RS04255;Name=LPH39_RS04255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04255;old_locus_tag=LPH39_04255 NZ_CP087677.1 Protein Homology CDS 1046751 1047710 . - 0 ID=cds-WP_038271290.1;Parent=gene-LPH39_RS04255;Dbxref=Genbank:WP_038271290.1;Name=WP_038271290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486761.1;locus_tag=LPH39_RS04255;product=ribose-phosphate diphosphokinase;protein_id=WP_038271290.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1047841 1047917 . - . ID=gene-LPH39_RS04260;Name=LPH39_RS04260;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS04260;old_locus_tag=LPH39_04260 NZ_CP087677.1 tRNAscan-SE tRNA 1047841 1047917 . - . ID=rna-LPH39_RS04260;Parent=gene-LPH39_RS04260;anticodon=(pos:complement(1047881..1047883));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04260;product=tRNA-Gln NZ_CP087677.1 tRNAscan-SE exon 1047841 1047917 . - . ID=exon-LPH39_RS04260-1;Parent=rna-LPH39_RS04260;anticodon=(pos:complement(1047881..1047883));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04260;product=tRNA-Gln NZ_CP087677.1 RefSeq gene 1047921 1048799 . - . ID=gene-LPH39_RS04265;Name=ispE;gbkey=Gene;gene=ispE;gene_biotype=protein_coding;locus_tag=LPH39_RS04265;old_locus_tag=LPH39_04265 NZ_CP087677.1 Protein Homology CDS 1047921 1048799 . - 0 ID=cds-WP_114867187.1;Parent=gene-LPH39_RS04265;Dbxref=Genbank:WP_114867187.1;Name=WP_114867187.1;Ontology_term=GO:0016114,GO:0050515;gbkey=CDS;gene=ispE;go_function=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity|0050515||IEA;go_process=terpenoid biosynthetic process|0016114||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084712.1;locus_tag=LPH39_RS04265;product=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase;protein_id=WP_114867187.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1048796 1049446 . - . ID=gene-LPH39_RS04270;Name=lolB;gbkey=Gene;gene=lolB;gene_biotype=protein_coding;locus_tag=LPH39_RS04270;old_locus_tag=LPH39_04270 NZ_CP087677.1 Protein Homology CDS 1048796 1049446 . - 0 ID=cds-WP_160199309.1;Parent=gene-LPH39_RS04270;Dbxref=Genbank:WP_160199309.1;Name=WP_160199309.1;Ontology_term=GO:0009306,GO:0008320;gbkey=CDS;gene=lolB;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087398.1;locus_tag=LPH39_RS04270;product=lipoprotein insertase outer membrane protein LolB;protein_id=WP_160199309.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1049443 1051122 . - . ID=gene-LPH39_RS04275;Name=LPH39_RS04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04275;old_locus_tag=LPH39_04275 NZ_CP087677.1 Protein Homology CDS 1049443 1051122 . - 0 ID=cds-WP_038271275.1;Parent=gene-LPH39_RS04275;Dbxref=Genbank:WP_038271275.1;Name=WP_038271275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972526.1;locus_tag=LPH39_RS04275;product=membrane protein;protein_id=WP_038271275.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1051189 1052487 . + . ID=gene-LPH39_RS04280;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=LPH39_RS04280;old_locus_tag=LPH39_04280 NZ_CP087677.1 Protein Homology CDS 1051189 1052487 . + 0 ID=cds-WP_038271288.1;Parent=gene-LPH39_RS04280;Dbxref=Genbank:WP_038271288.1;Name=WP_038271288.1;Ontology_term=GO:0006779,GO:0008883,GO:0005737;gbkey=CDS;gene=hemA;go_component=cytoplasm|0005737||IEA;go_function=glutamyl-tRNA reductase activity|0008883||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852071.1;locus_tag=LPH39_RS04280;product=glutamyl-tRNA reductase;protein_id=WP_038271288.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1052465 1053550 . + . ID=gene-LPH39_RS04285;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=LPH39_RS04285;old_locus_tag=LPH39_04285 NZ_CP087677.1 Protein Homology CDS 1052465 1053550 . + 0 ID=cds-WP_038271274.1;Parent=gene-LPH39_RS04285;Dbxref=Genbank:WP_038271274.1;Name=WP_038271274.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfA;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300176.1;locus_tag=LPH39_RS04285;product=peptide chain release factor 1;protein_id=WP_038271274.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1054409 1054615 . - . ID=gene-LPH39_RS04290;Name=LPH39_RS04290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04290;old_locus_tag=LPH39_04290 NZ_CP087677.1 GeneMarkS-2+ CDS 1054409 1054615 . - 0 ID=cds-WP_152536621.1;Parent=gene-LPH39_RS04290;Dbxref=Genbank:WP_152536621.1;Name=WP_152536621.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04290;product=hypothetical protein;protein_id=WP_152536621.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1055358 1055489 . + . ID=gene-LPH39_RS11985;Name=LPH39_RS11985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11985 NZ_CP087677.1 GeneMarkS-2+ CDS 1055358 1055489 . + 0 ID=cds-WP_267903160.1;Parent=gene-LPH39_RS11985;Dbxref=Genbank:WP_267903160.1;Name=WP_267903160.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11985;product=hypothetical protein;protein_id=WP_267903160.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1056222 1058396 . - . ID=gene-LPH39_RS04295;Name=rlmKL;gbkey=Gene;gene=rlmKL;gene_biotype=protein_coding;locus_tag=LPH39_RS04295;old_locus_tag=LPH39_04295 NZ_CP087677.1 Protein Homology CDS 1056222 1058396 . - 0 ID=cds-WP_114867227.1;Parent=gene-LPH39_RS04295;Dbxref=Genbank:WP_114867227.1;Name=WP_114867227.1;Ontology_term=GO:0031167,GO:0003723,GO:0008990;gbkey=CDS;gene=rlmKL;go_function=RNA binding|0003723||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852069.1;locus_tag=LPH39_RS04295;product=bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL;protein_id=WP_114867227.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1058728 1058862 . - . ID=gene-LPH39_RS11990;Name=LPH39_RS11990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11990 NZ_CP087677.1 GeneMarkS-2+ CDS 1058728 1058862 . - 0 ID=cds-WP_267903162.1;Parent=gene-LPH39_RS11990;Dbxref=Genbank:WP_267903162.1;Name=WP_267903162.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11990;product=hypothetical protein;protein_id=WP_267903162.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1059262 1059789 . - . ID=gene-LPH39_RS04300;Name=LPH39_RS04300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04300;old_locus_tag=LPH39_04300 NZ_CP087677.1 Protein Homology CDS 1059262 1059789 . - 0 ID=cds-WP_038271270.1;Parent=gene-LPH39_RS04300;Dbxref=Genbank:WP_038271270.1;Name=WP_038271270.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966252.1;locus_tag=LPH39_RS04300;product=alpha/beta hydrolase;protein_id=WP_038271270.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1060183 1060752 . + . ID=gene-LPH39_RS04305;Name=LPH39_RS04305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04305;old_locus_tag=LPH39_04305 NZ_CP087677.1 Protein Homology CDS 1060183 1060752 . + 0 ID=cds-WP_038271269.1;Parent=gene-LPH39_RS04305;Dbxref=Genbank:WP_038271269.1;Name=WP_038271269.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084727.1;locus_tag=LPH39_RS04305;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_038271269.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1060872 1061030 . - . ID=gene-LPH39_RS04310;Name=LPH39_RS04310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04310;old_locus_tag=LPH39_04310 NZ_CP087677.1 GeneMarkS-2+ CDS 1060872 1061030 . - 0 ID=cds-WP_160165177.1;Parent=gene-LPH39_RS04310;Dbxref=Genbank:WP_160165177.1;Name=WP_160165177.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04310;product=hypothetical protein;protein_id=WP_160165177.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1061891 1062106 . + . ID=gene-LPH39_RS04315;Name=LPH39_RS04315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04315;old_locus_tag=LPH39_04315 NZ_CP087677.1 GeneMarkS-2+ CDS 1061891 1062106 . + 0 ID=cds-WP_152536619.1;Parent=gene-LPH39_RS04315;Dbxref=Genbank:WP_152536619.1;Name=WP_152536619.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04315;product=hypothetical protein;protein_id=WP_152536619.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1062169 1062366 . + . ID=gene-LPH39_RS04320;Name=LPH39_RS04320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04320;old_locus_tag=LPH39_04320 NZ_CP087677.1 GeneMarkS-2+ CDS 1062169 1062366 . + 0 ID=cds-WP_038271268.1;Parent=gene-LPH39_RS04320;Dbxref=Genbank:WP_038271268.1;Name=WP_038271268.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04320;product=hypothetical protein;protein_id=WP_038271268.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1062719 1062931 . - . ID=gene-LPH39_RS04325;Name=LPH39_RS04325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04325;old_locus_tag=LPH39_04325 NZ_CP087677.1 GeneMarkS-2+ CDS 1062719 1062931 . - 0 ID=cds-WP_152536618.1;Parent=gene-LPH39_RS04325;Dbxref=Genbank:WP_152536618.1;Name=WP_152536618.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04325;product=hypothetical protein;protein_id=WP_152536618.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1063025 1063213 . + . ID=gene-LPH39_RS04330;Name=LPH39_RS04330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04330;old_locus_tag=LPH39_04330 NZ_CP087677.1 GeneMarkS-2+ CDS 1063025 1063213 . + 0 ID=cds-WP_230439354.1;Parent=gene-LPH39_RS04330;Dbxref=Genbank:WP_230439354.1;Name=WP_230439354.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04330;product=hypothetical protein;protein_id=WP_230439354.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1063277 1063576 . + . ID=gene-LPH39_RS04335;Name=LPH39_RS04335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04335;old_locus_tag=LPH39_04335 NZ_CP087677.1 GeneMarkS-2+ CDS 1063277 1063576 . + 0 ID=cds-WP_051482316.1;Parent=gene-LPH39_RS04335;Dbxref=Genbank:WP_051482316.1;Name=WP_051482316.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04335;product=hypothetical protein;protein_id=WP_051482316.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1064177 1066027 . + . ID=gene-LPH39_RS04340;Name=LPH39_RS04340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04340;old_locus_tag=LPH39_04340 NZ_CP087677.1 Protein Homology CDS 1064177 1066027 . + 0 ID=cds-WP_038271265.1;Parent=gene-LPH39_RS04340;Dbxref=Genbank:WP_038271265.1;Name=WP_038271265.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024573.2;locus_tag=LPH39_RS04340;product=ATP-binding protein;protein_id=WP_038271265.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1066189 1066410 . + . ID=gene-LPH39_RS04345;Name=LPH39_RS04345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04345;old_locus_tag=LPH39_04345 NZ_CP087677.1 GeneMarkS-2+ CDS 1066189 1066410 . + 0 ID=cds-WP_152536617.1;Parent=gene-LPH39_RS04345;Dbxref=Genbank:WP_152536617.1;Name=WP_152536617.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04345;product=hypothetical protein;protein_id=WP_152536617.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1066429 1066802 . + . ID=gene-LPH39_RS04350;Name=LPH39_RS04350;end_range=1066802,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS04350;old_locus_tag=LPH39_04350;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1066429 1066802 . + 0 ID=cds-LPH39_RS04350;Parent=gene-LPH39_RS04350;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1066802,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1;locus_tag=LPH39_RS04350;partial=true;product=recombinase family protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1067268 1068026 . + . ID=gene-LPH39_RS04355;Name=LPH39_RS04355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04355;old_locus_tag=LPH39_04355 NZ_CP087677.1 Protein Homology CDS 1067268 1068026 . + 0 ID=cds-WP_038271262.1;Parent=gene-LPH39_RS04355;Dbxref=Genbank:WP_038271262.1;Name=WP_038271262.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012707.2;locus_tag=LPH39_RS04355;product=transporter substrate-binding domain-containing protein;protein_id=WP_038271262.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1068052 1068747 . + . ID=gene-LPH39_RS04360;Name=LPH39_RS04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04360;old_locus_tag=LPH39_04360 NZ_CP087677.1 Protein Homology CDS 1068052 1068747 . + 0 ID=cds-WP_038271261.1;Parent=gene-LPH39_RS04360;Dbxref=Genbank:WP_038271261.1;Name=WP_038271261.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012738.2;locus_tag=LPH39_RS04360;product=amino acid ABC transporter permease;protein_id=WP_038271261.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1068725 1069444 . + . ID=gene-LPH39_RS04365;Name=LPH39_RS04365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04365;old_locus_tag=LPH39_04365 NZ_CP087677.1 Protein Homology CDS 1068725 1069444 . + 0 ID=cds-WP_038271260.1;Parent=gene-LPH39_RS04365;Dbxref=Genbank:WP_038271260.1;Name=WP_038271260.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012235.2;locus_tag=LPH39_RS04365;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_038271260.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1069451 1070116 . + . ID=gene-LPH39_RS04370;Name=LPH39_RS04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04370;old_locus_tag=LPH39_04370 NZ_CP087677.1 Protein Homology CDS 1069451 1070116 . + 0 ID=cds-WP_038271259.1;Parent=gene-LPH39_RS04370;Dbxref=Genbank:WP_038271259.1;Name=WP_038271259.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012738.2;locus_tag=LPH39_RS04370;product=amino acid ABC transporter permease;protein_id=WP_038271259.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1070103 1070402 . - . ID=gene-LPH39_RS04375;Name=LPH39_RS04375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04375;old_locus_tag=LPH39_04375 NZ_CP087677.1 Protein Homology CDS 1070103 1070402 . - 0 ID=cds-WP_230428301.1;Parent=gene-LPH39_RS04375;Dbxref=Genbank:WP_230428301.1;Name=WP_230428301.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: protein motif:HMM:NF012789.2;locus_tag=LPH39_RS04375;product=UvrD-helicase domain-containing protein;protein_id=WP_230428301.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1070707 1070949 . - . ID=gene-LPH39_RS04380;Name=LPH39_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04380;old_locus_tag=LPH39_04380 NZ_CP087677.1 Protein Homology CDS 1070707 1070949 . - 0 ID=cds-WP_051482315.1;Parent=gene-LPH39_RS04380;Dbxref=Genbank:WP_051482315.1;Name=WP_051482315.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012789.2;locus_tag=LPH39_RS04380;product=AAA family ATPase;protein_id=WP_051482315.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1071652 1072248 . - . ID=gene-LPH39_RS04385;Name=LPH39_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04385;old_locus_tag=LPH39_04385 NZ_CP087677.1 Protein Homology CDS 1071652 1072248 . - 0 ID=cds-WP_038271287.1;Parent=gene-LPH39_RS04385;Dbxref=Genbank:WP_038271287.1;Name=WP_038271287.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895080.1;locus_tag=LPH39_RS04385;product=YhgN family NAAT transporter;protein_id=WP_038271287.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1072912 1073232 . - . ID=gene-LPH39_RS04390;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=LPH39_RS04390;old_locus_tag=LPH39_04390 NZ_CP087677.1 Protein Homology CDS 1072912 1073232 . - 0 ID=cds-WP_038271257.1;Parent=gene-LPH39_RS04390;Dbxref=Genbank:WP_038271257.1;Name=WP_038271257.1;Ontology_term=GO:0009055;gbkey=CDS;gene=grxD;go_function=electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485599.1;locus_tag=LPH39_RS04390;product=Grx4 family monothiol glutaredoxin;protein_id=WP_038271257.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1073929 1075113 . - . ID=gene-LPH39_RS04395;Name=LPH39_RS04395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04395;old_locus_tag=LPH39_04395 NZ_CP087677.1 Protein Homology CDS 1073929 1075113 . - 0 ID=cds-WP_038271256.1;Parent=gene-LPH39_RS04395;Dbxref=Genbank:WP_038271256.1;Name=WP_038271256.1;Ontology_term=GO:0006189,GO:0004638,GO:0005524,GO:0046872;gbkey=CDS;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852058.1;locus_tag=LPH39_RS04395;product=5-(carboxyamino)imidazole ribonucleotide synthase;protein_id=WP_038271256.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1075110 1075613 . - . ID=gene-LPH39_RS04400;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=LPH39_RS04400;old_locus_tag=LPH39_04400 NZ_CP087677.1 Protein Homology CDS 1075110 1075613 . - 0 ID=cds-WP_038271255.1;Parent=gene-LPH39_RS04400;Dbxref=Genbank:WP_038271255.1;Name=WP_038271255.1;Ontology_term=GO:0009152,GO:0004638,GO:0009320;gbkey=CDS;gene=purE;go_component=phosphoribosylaminoimidazole carboxylase complex|0009320||IEA;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003468225.1;locus_tag=LPH39_RS04400;product=5-(carboxyamino)imidazole ribonucleotide mutase;protein_id=WP_038271255.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1075676 1075945 . + . ID=gene-LPH39_RS04405;Name=LPH39_RS04405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04405;old_locus_tag=LPH39_04405 NZ_CP087677.1 Protein Homology CDS 1075676 1075945 . + 0 ID=cds-WP_038271254.1;Parent=gene-LPH39_RS04405;Dbxref=Genbank:WP_038271254.1;Name=WP_038271254.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008570984.1;locus_tag=LPH39_RS04405;product=Trm112 family protein;protein_id=WP_038271254.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1076706 1077773 . + . ID=gene-LPH39_RS04410;Name=LPH39_RS04410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04410;old_locus_tag=LPH39_04410 NZ_CP087677.1 Protein Homology CDS 1076706 1077773 . + 0 ID=cds-WP_081755437.1;Parent=gene-LPH39_RS04410;Dbxref=Genbank:WP_081755437.1;Name=WP_081755437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895089.1;locus_tag=LPH39_RS04410;product=DUF2272 domain-containing protein;protein_id=WP_081755437.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1078599 1078886 . + . ID=gene-LPH39_RS04415;Name=LPH39_RS04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04415;old_locus_tag=LPH39_04415 NZ_CP087677.1 GeneMarkS-2+ CDS 1078599 1078886 . + 0 ID=cds-WP_051482314.1;Parent=gene-LPH39_RS04415;Dbxref=Genbank:WP_051482314.1;Name=WP_051482314.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04415;product=hypothetical protein;protein_id=WP_051482314.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1080127 1082361 . - . ID=gene-LPH39_RS04420;Name=LPH39_RS04420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04420;old_locus_tag=LPH39_04420 NZ_CP087677.1 Protein Homology CDS 1080127 1082361 . - 0 ID=cds-WP_230428249.1;Parent=gene-LPH39_RS04420;Dbxref=Genbank:WP_230428249.1;Name=WP_230428249.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087420.1;locus_tag=LPH39_RS04420;product=multicopper oxidase family protein;protein_id=WP_230428249.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1084274 1085647 . - . ID=gene-LPH39_RS04425;Name=LPH39_RS04425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04425;old_locus_tag=LPH39_04425 NZ_CP087677.1 Protein Homology CDS 1084274 1085647 . - 0 ID=cds-WP_038271253.1;Parent=gene-LPH39_RS04425;Dbxref=Genbank:WP_038271253.1;Name=WP_038271253.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895093.1;locus_tag=LPH39_RS04425;product=virulence factor family protein;protein_id=WP_038271253.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1087629 1089605 . - . ID=gene-LPH39_RS04430;Name=rep;gbkey=Gene;gene=rep;gene_biotype=protein_coding;locus_tag=LPH39_RS04430;old_locus_tag=LPH39_04430 NZ_CP087677.1 Protein Homology CDS 1087629 1089605 . - 0 ID=cds-WP_038271284.1;Parent=gene-LPH39_RS04430;Dbxref=Genbank:WP_038271284.1;Name=WP_038271284.1;Ontology_term=GO:0006310,GO:0003678;gbkey=CDS;gene=rep;go_function=DNA helicase activity|0003678||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091509.1;locus_tag=LPH39_RS04430;product=DNA helicase Rep;protein_id=WP_038271284.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1090115 1090327 . + . ID=gene-LPH39_RS04435;Name=LPH39_RS04435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04435;old_locus_tag=LPH39_04435 NZ_CP087677.1 GeneMarkS-2+ CDS 1090115 1090327 . + 0 ID=cds-WP_152536616.1;Parent=gene-LPH39_RS04435;Dbxref=Genbank:WP_152536616.1;Name=WP_152536616.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04435;product=hypothetical protein;protein_id=WP_152536616.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1090540 1092147 . - . ID=gene-LPH39_RS04440;Name=LPH39_RS04440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04440;old_locus_tag=LPH39_04440 NZ_CP087677.1 Protein Homology CDS 1090540 1092147 . - 0 ID=cds-WP_038271252.1;Parent=gene-LPH39_RS04440;Dbxref=Genbank:WP_038271252.1;Name=WP_038271252.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091511.1;locus_tag=LPH39_RS04440;product=glucan biosynthesis protein;protein_id=WP_038271252.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1093088 1094989 . - . ID=gene-LPH39_RS04445;Name=sppA;gbkey=Gene;gene=sppA;gene_biotype=protein_coding;locus_tag=LPH39_RS04445;old_locus_tag=LPH39_04445 NZ_CP087677.1 Protein Homology CDS 1093088 1094989 . - 0 ID=cds-WP_038271251.1;Parent=gene-LPH39_RS04445;Dbxref=Genbank:WP_038271251.1;Name=WP_038271251.1;Ontology_term=GO:0006465,GO:0006508,GO:0008233,GO:0016020;gbkey=CDS;gene=sppA;go_component=membrane|0016020||IEA;go_function=peptidase activity|0008233||IEA;go_process=signal peptide processing|0006465||IEA,proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087426.1;locus_tag=LPH39_RS04445;product=signal peptide peptidase SppA;protein_id=WP_038271251.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1095073 1096434 . - . ID=gene-LPH39_RS04450;Name=LPH39_RS04450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04450;old_locus_tag=LPH39_04450 NZ_CP087677.1 Protein Homology CDS 1095073 1096434 . - 0 ID=cds-WP_038271250.1;Parent=gene-LPH39_RS04450;Dbxref=Genbank:WP_038271250.1;Name=WP_038271250.1;Ontology_term=GO:0006855,GO:0009410,GO:0042910,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic transmembrane transport|0006855||IEA,response to xenobiotic stimulus|0009410||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087427.1;locus_tag=LPH39_RS04450;product=MATE family efflux transporter;protein_id=WP_038271250.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1096793 1097263 . - . ID=gene-LPH39_RS04455;Name=LPH39_RS04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04455;old_locus_tag=LPH39_04455 NZ_CP087677.1 Protein Homology CDS 1096793 1097263 . - 0 ID=cds-WP_230428250.1;Parent=gene-LPH39_RS04455;Dbxref=Genbank:WP_230428250.1;Name=WP_230428250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895101.1;locus_tag=LPH39_RS04455;product=DUF3106 domain-containing protein;protein_id=WP_230428250.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1097359 1098318 . - . ID=gene-LPH39_RS04460;Name=LPH39_RS04460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04460;old_locus_tag=LPH39_04460 NZ_CP087677.1 Protein Homology CDS 1097359 1098318 . - 0 ID=cds-WP_038271248.1;Parent=gene-LPH39_RS04460;Dbxref=Genbank:WP_038271248.1;Name=WP_038271248.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087429.1;locus_tag=LPH39_RS04460;product=hypothetical protein;protein_id=WP_038271248.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1098756 1100948 . + . ID=gene-LPH39_RS04465;Name=LPH39_RS04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04465;old_locus_tag=LPH39_04465 NZ_CP087677.1 Protein Homology CDS 1098756 1100948 . + 0 ID=cds-WP_038271247.1;Parent=gene-LPH39_RS04465;Dbxref=Genbank:WP_038271247.1;Name=WP_038271247.1;Ontology_term=GO:0006260,GO:0032508,GO:0003678;gbkey=CDS;go_function=DNA helicase activity|0003678||IEA;go_process=DNA replication|0006260||IEA,DNA duplex unwinding|0032508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167545.1;locus_tag=LPH39_RS04465;product=primosomal protein N';protein_id=WP_038271247.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1101888 1102754 . - . ID=gene-LPH39_RS04470;Name=rpoH;gbkey=Gene;gene=rpoH;gene_biotype=protein_coding;locus_tag=LPH39_RS04470;old_locus_tag=LPH39_04470 NZ_CP087677.1 Protein Homology CDS 1101888 1102754 . - 0 ID=cds-WP_038271246.1;Parent=gene-LPH39_RS04470;Dbxref=Genbank:WP_038271246.1;Name=WP_038271246.1;Ontology_term=GO:0006352,GO:0016987;gbkey=CDS;gene=rpoH;go_function=sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803651.1;locus_tag=LPH39_RS04470;product=RNA polymerase sigma factor RpoH;protein_id=WP_038271246.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1102898 1103638 . - . ID=gene-LPH39_RS04475;Name=ung;gbkey=Gene;gene=ung;gene_biotype=protein_coding;locus_tag=LPH39_RS04475;old_locus_tag=LPH39_04475 NZ_CP087677.1 Protein Homology CDS 1102898 1103638 . - 0 ID=cds-WP_038271245.1;Parent=gene-LPH39_RS04475;Dbxref=Genbank:WP_038271245.1;Name=WP_038271245.1;Ontology_term=GO:0006284,GO:0004844,GO:0016799;gbkey=CDS;gene=ung;go_function=uracil DNA N-glycosylase activity|0004844||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157034.1;locus_tag=LPH39_RS04475;product=uracil-DNA glycosylase;protein_id=WP_038271245.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1103644 1104492 . - . ID=gene-LPH39_RS04480;Name=LPH39_RS04480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04480;old_locus_tag=LPH39_04480 NZ_CP087677.1 Protein Homology CDS 1103644 1104492 . - 0 ID=cds-WP_038271244.1;Parent=gene-LPH39_RS04480;Dbxref=Genbank:WP_038271244.1;Name=WP_038271244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852754.1;locus_tag=LPH39_RS04480;product=response regulator;protein_id=WP_038271244.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1104507 1105445 . - . ID=gene-LPH39_RS04485;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=LPH39_RS04485;old_locus_tag=LPH39_04485 NZ_CP087677.1 Protein Homology CDS 1104507 1105445 . - 0 ID=cds-WP_038271243.1;Parent=gene-LPH39_RS04485;Dbxref=Genbank:WP_038271243.1;Name=WP_038271243.1;Ontology_term=GO:0000910;gbkey=CDS;gene=ftsX;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484495.1;locus_tag=LPH39_RS04485;product=permease-like cell division protein FtsX;protein_id=WP_038271243.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1105442 1106128 . - . ID=gene-LPH39_RS04490;Name=ftsE;gbkey=Gene;gene=ftsE;gene_biotype=protein_coding;locus_tag=LPH39_RS04490;old_locus_tag=LPH39_04490 NZ_CP087677.1 Protein Homology CDS 1105442 1106128 . - 0 ID=cds-WP_038271242.1;Parent=gene-LPH39_RS04490;Dbxref=Genbank:WP_038271242.1;Name=WP_038271242.1;Ontology_term=GO:0000910,GO:0006810,GO:0005524;gbkey=CDS;gene=ftsE;go_function=ATP binding|0005524||IEA;go_process=cytokinesis|0000910||IEA,transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484499.1;locus_tag=LPH39_RS04490;product=cell division ATP-binding protein FtsE;protein_id=WP_038271242.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1106202 1107854 . - . ID=gene-LPH39_RS04495;Name=rhlB;gbkey=Gene;gene=rhlB;gene_biotype=protein_coding;locus_tag=LPH39_RS04495;old_locus_tag=LPH39_04495 NZ_CP087677.1 Protein Homology CDS 1106202 1107854 . - 0 ID=cds-WP_038271241.1;Parent=gene-LPH39_RS04495;Dbxref=Genbank:WP_038271241.1;Name=WP_038271241.1;gbkey=CDS;gene=rhlB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031337155.1;locus_tag=LPH39_RS04495;product=ATP-dependent RNA helicase RhlB;protein_id=WP_038271241.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1108052 1108393 . + . ID=gene-LPH39_RS04500;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=LPH39_RS04500;old_locus_tag=LPH39_04500 NZ_CP087677.1 Protein Homology CDS 1108052 1108393 . + 0 ID=cds-WP_038271240.1;Parent=gene-LPH39_RS04500;Dbxref=Genbank:WP_038271240.1;Name=WP_038271240.1;Ontology_term=GO:0015036,GO:0005737;gbkey=CDS;gene=trxA;go_component=cytoplasm|0005737||IEA;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852709.1;locus_tag=LPH39_RS04500;product=thioredoxin;protein_id=WP_038271240.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1108601 1110295 . + . ID=gene-LPH39_RS04505;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=LPH39_RS04505;old_locus_tag=LPH39_04505 NZ_CP087677.1 Protein Homology CDS 1108601 1110295 . + 0 ID=cds-WP_038271239.1;Parent=gene-LPH39_RS04505;Dbxref=Genbank:WP_038271239.1;Name=WP_038271239.1;Ontology_term=GO:0006353,GO:0004386,GO:0008186;gbkey=CDS;gene=rho;go_function=helicase activity|0004386||IEA,ATP-dependent activity%2C acting on RNA|0008186||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008266970.1;locus_tag=LPH39_RS04505;product=transcription termination factor Rho;protein_id=WP_038271239.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1111205 1113436 . - . ID=gene-LPH39_RS04510;Name=LPH39_RS04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04510;old_locus_tag=LPH39_04510 NZ_CP087677.1 Protein Homology CDS 1111205 1113436 . - 0 ID=cds-WP_038271238.1;Parent=gene-LPH39_RS04510;Dbxref=Genbank:WP_038271238.1;Name=WP_038271238.1;Ontology_term=GO:0006099,GO:0004450;gbkey=CDS;go_function=isocitrate dehydrogenase (NADP+) activity|0004450||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157024.1;locus_tag=LPH39_RS04510;product=NADP-dependent isocitrate dehydrogenase;protein_id=WP_038271238.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1113459 1113590 . - . ID=gene-LPH39_RS11995;Name=LPH39_RS11995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11995 NZ_CP087677.1 GeneMarkS-2+ CDS 1113459 1113590 . - 0 ID=cds-WP_268980370.1;Parent=gene-LPH39_RS11995;Dbxref=Genbank:WP_268980370.1;Name=WP_268980370.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11995;product=hypothetical protein;protein_id=WP_268980370.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1115427 1116101 . + . ID=gene-LPH39_RS04515;Name=cas5c;gbkey=Gene;gene=cas5c;gene_biotype=protein_coding;locus_tag=LPH39_RS04515;old_locus_tag=LPH39_04515 NZ_CP087677.1 Protein Homology CDS 1115427 1116101 . + 0 ID=cds-WP_038271237.1;Parent=gene-LPH39_RS04515;Dbxref=Genbank:WP_038271237.1;Name=WP_038271237.1;Ontology_term=GO:0043571,GO:0003674,GO:0005575;gbkey=CDS;gene=cas5c;go_component=cellular_component|0005575||IEA;go_function=molecular_function|0003674||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003465423.1;locus_tag=LPH39_RS04515;product=type I-C CRISPR-associated protein Cas5c;protein_id=WP_038271237.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1116098 1117909 . + . ID=gene-LPH39_RS04520;Name=cas8c;gbkey=Gene;gene=cas8c;gene_biotype=protein_coding;locus_tag=LPH39_RS04520;old_locus_tag=LPH39_04520 NZ_CP087677.1 Protein Homology CDS 1116098 1117909 . + 0 ID=cds-WP_038271236.1;Parent=gene-LPH39_RS04520;Dbxref=Genbank:WP_038271236.1;Name=WP_038271236.1;Ontology_term=GO:0043571,GO:0003674,GO:0005575;gbkey=CDS;gene=cas8c;go_component=cellular_component|0005575||IEA;go_function=molecular_function|0003674||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017119023.1;locus_tag=LPH39_RS04520;product=type I-C CRISPR-associated protein Cas8c/Csd1;protein_id=WP_038271236.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1117906 1118772 . + . ID=gene-LPH39_RS04525;Name=cas7c;gbkey=Gene;gene=cas7c;gene_biotype=protein_coding;locus_tag=LPH39_RS04525;old_locus_tag=LPH39_04525 NZ_CP087677.1 Protein Homology CDS 1117906 1118772 . + 0 ID=cds-WP_038271235.1;Parent=gene-LPH39_RS04525;Dbxref=Genbank:WP_038271235.1;Name=WP_038271235.1;Ontology_term=GO:0043571,GO:0003674;gbkey=CDS;gene=cas7c;go_function=molecular_function|0003674||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372412.1;locus_tag=LPH39_RS04525;product=type I-C CRISPR-associated protein Cas7/Csd2;protein_id=WP_038271235.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1121883 1123337 . - . ID=gene-LPH39_RS04530;Name=LPH39_RS04530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04530;old_locus_tag=LPH39_04530 NZ_CP087677.1 Protein Homology CDS 1121883 1123337 . - 0 ID=cds-WP_038271234.1;Parent=gene-LPH39_RS04530;Dbxref=Genbank:WP_038271234.1;Name=WP_038271234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084798.1;locus_tag=LPH39_RS04530;product=S41 family peptidase;protein_id=WP_038271234.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1123488 1124798 . - . ID=gene-LPH39_RS04535;Name=LPH39_RS04535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04535;old_locus_tag=LPH39_04535 NZ_CP087677.1 Protein Homology CDS 1123488 1124798 . - 0 ID=cds-WP_038271283.1;Parent=gene-LPH39_RS04535;Dbxref=Genbank:WP_038271283.1;Name=WP_038271283.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084799.1;locus_tag=LPH39_RS04535;product=murein hydrolase activator EnvC;protein_id=WP_038271283.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1124996 1126715 . + . ID=gene-LPH39_RS04540;Name=LPH39_RS04540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS04540;old_locus_tag=LPH39_04540;pseudo=true NZ_CP087677.1 Protein Homology CDS 1124996 1126715 . + 0 ID=cds-LPH39_RS04540;Parent=gene-LPH39_RS04540;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098351.1;locus_tag=LPH39_RS04540;product=M28 family peptidase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1128006 1129124 . + . ID=gene-LPH39_RS04545;Name=LPH39_RS04545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04545;old_locus_tag=LPH39_04545 NZ_CP087677.1 Protein Homology CDS 1128006 1129124 . + 0 ID=cds-WP_081755436.1;Parent=gene-LPH39_RS04545;Dbxref=Genbank:WP_081755436.1;Name=WP_081755436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853012.1;locus_tag=LPH39_RS04545;product=glycoside hydrolase family 5 protein;protein_id=WP_081755436.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1130041 1130277 . + . ID=gene-LPH39_RS04550;Name=LPH39_RS04550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04550;old_locus_tag=LPH39_04550 NZ_CP087677.1 GeneMarkS-2+ CDS 1130041 1130277 . + 0 ID=cds-WP_230428251.1;Parent=gene-LPH39_RS04550;Dbxref=Genbank:WP_230428251.1;Name=WP_230428251.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04550;product=hypothetical protein;protein_id=WP_230428251.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1130394 1130536 . + . ID=gene-LPH39_RS04555;Name=LPH39_RS04555;end_range=1130536,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS04555;old_locus_tag=LPH39_04555;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1130394 1130536 . + 0 ID=cds-LPH39_RS04555;Parent=gene-LPH39_RS04555;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1130536,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LPH39_RS04555;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1130668 1130856 . + . ID=gene-LPH39_RS04560;Name=LPH39_RS04560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04560;old_locus_tag=LPH39_04560 NZ_CP087677.1 GeneMarkS-2+ CDS 1130668 1130856 . + 0 ID=cds-WP_152536615.1;Parent=gene-LPH39_RS04560;Dbxref=Genbank:WP_152536615.1;Name=WP_152536615.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04560;product=hypothetical protein;protein_id=WP_152536615.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1131386 1132870 . - . ID=gene-LPH39_RS04565;Name=LPH39_RS04565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04565;old_locus_tag=LPH39_04565 NZ_CP087677.1 Protein Homology CDS 1131386 1132870 . - 0 ID=cds-WP_038271230.1;Parent=gene-LPH39_RS04565;Dbxref=Genbank:WP_038271230.1;Name=WP_038271230.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098354.1;locus_tag=LPH39_RS04565;product=FAD-dependent oxidoreductase;protein_id=WP_038271230.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1133009 1137478 . - . ID=gene-LPH39_RS04570;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=LPH39_RS04570;old_locus_tag=LPH39_04570 NZ_CP087677.1 Protein Homology CDS 1133009 1137478 . - 0 ID=cds-WP_038271229.1;Parent=gene-LPH39_RS04570;Dbxref=Genbank:WP_038271229.1;Name=WP_038271229.1;Ontology_term=GO:0006537,GO:0006807,GO:0003824,GO:0015930,GO:0016491;gbkey=CDS;gene=gltB;go_function=catalytic activity|0003824||IEA,glutamate synthase activity|0015930||IEA,oxidoreductase activity|0016491||IEA;go_process=glutamate biosynthetic process|0006537||IEA,nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087485.1;locus_tag=LPH39_RS04570;product=glutamate synthase large subunit;protein_id=WP_038271229.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1138100 1138243 . - . ID=gene-LPH39_RS04575;Name=LPH39_RS04575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04575;old_locus_tag=LPH39_04575 NZ_CP087677.1 GeneMarkS-2+ CDS 1138100 1138243 . - 0 ID=cds-WP_160165173.1;Parent=gene-LPH39_RS04575;Dbxref=Genbank:WP_160165173.1;Name=WP_160165173.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04575;product=hypothetical protein;protein_id=WP_160165173.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1138414 1139268 . + . ID=gene-LPH39_RS04580;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=LPH39_RS04580;old_locus_tag=LPH39_04580 NZ_CP087677.1 Protein Homology CDS 1138414 1139268 . + 0 ID=cds-WP_038271228.1;Parent=gene-LPH39_RS04580;Dbxref=Genbank:WP_038271228.1;Name=WP_038271228.1;Ontology_term=GO:0006561,GO:0004735;gbkey=CDS;gene=proC;go_function=pyrroline-5-carboxylate reductase activity|0004735||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087478.1;locus_tag=LPH39_RS04580;product=pyrroline-5-carboxylate reductase;protein_id=WP_038271228.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1140394 1143000 . + . ID=gene-LPH39_RS04585;Name=LPH39_RS04585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04585;old_locus_tag=LPH39_04585 NZ_CP087677.1 Protein Homology CDS 1140394 1143000 . + 0 ID=cds-WP_114867192.1;Parent=gene-LPH39_RS04585;Dbxref=Genbank:WP_114867192.1;Name=WP_114867192.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164668.1;locus_tag=LPH39_RS04585;product=TonB-dependent receptor;protein_id=WP_114867192.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1143094 1144941 . + . ID=gene-LPH39_RS04590;Name=LPH39_RS04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04590;old_locus_tag=LPH39_04590 NZ_CP087677.1 Protein Homology CDS 1143094 1144941 . + 0 ID=cds-WP_038271227.1;Parent=gene-LPH39_RS04590;Dbxref=Genbank:WP_038271227.1;Name=WP_038271227.1;Ontology_term=GO:0005975,GO:0004560;gbkey=CDS;go_function=alpha-L-fucosidase activity|0004560||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338135.1;locus_tag=LPH39_RS04590;product=alpha-L-fucosidase;protein_id=WP_038271227.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1145855 1146207 . + . ID=gene-LPH39_RS04595;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=LPH39_RS04595;old_locus_tag=LPH39_04595 NZ_CP087677.1 cmsearch tmRNA 1145855 1146207 . + . ID=rna-LPH39_RS04595;Parent=gene-LPH39_RS04595;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS04595;product=transfer-messenger RNA NZ_CP087677.1 cmsearch exon 1145855 1146207 . + . ID=exon-LPH39_RS04595-1;Parent=rna-LPH39_RS04595;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS04595;product=transfer-messenger RNA NZ_CP087677.1 RefSeq gene 1146580 1147113 . - . ID=gene-LPH39_RS04600;Name=LPH39_RS04600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04600;old_locus_tag=LPH39_04600 NZ_CP087677.1 GeneMarkS-2+ CDS 1146580 1147113 . - 0 ID=cds-WP_038271225.1;Parent=gene-LPH39_RS04600;Dbxref=Genbank:WP_038271225.1;Name=WP_038271225.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04600;product=hypothetical protein;protein_id=WP_038271225.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1147110 1147424 . - . ID=gene-LPH39_RS04605;Name=LPH39_RS04605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04605;old_locus_tag=LPH39_04605 NZ_CP087677.1 GeneMarkS-2+ CDS 1147110 1147424 . - 0 ID=cds-WP_038271281.1;Parent=gene-LPH39_RS04605;Dbxref=Genbank:WP_038271281.1;Name=WP_038271281.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04605;product=hypothetical protein;protein_id=WP_038271281.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1147594 1147980 . - . ID=gene-LPH39_RS04610;Name=LPH39_RS04610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04610;old_locus_tag=LPH39_04610 NZ_CP087677.1 Protein Homology CDS 1147594 1147980 . - 0 ID=cds-WP_038271280.1;Parent=gene-LPH39_RS04610;Dbxref=Genbank:WP_038271280.1;Name=WP_038271280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086150.1;locus_tag=LPH39_RS04610;product=DUF596 domain-containing protein;protein_id=WP_038271280.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1147992 1148345 . - . ID=gene-LPH39_RS04615;Name=LPH39_RS04615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04615;old_locus_tag=LPH39_04615 NZ_CP087677.1 Protein Homology CDS 1147992 1148345 . - 0 ID=cds-WP_051482311.1;Parent=gene-LPH39_RS04615;Dbxref=Genbank:WP_051482311.1;Name=WP_051482311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090789.1;locus_tag=LPH39_RS04615;product=DUF769 domain-containing protein;protein_id=WP_051482311.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1148425 1148801 . - . ID=gene-LPH39_RS04620;Name=LPH39_RS04620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS04620;old_locus_tag=LPH39_04620;pseudo=true NZ_CP087677.1 Protein Homology CDS 1148425 1148801 . - 0 ID=cds-LPH39_RS04620;Parent=gene-LPH39_RS04620;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382790.1;locus_tag=LPH39_RS04620;product=DUF596 domain-containing protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1148813 1149142 . - . ID=gene-LPH39_RS04625;Name=LPH39_RS04625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04625;old_locus_tag=LPH39_04625 NZ_CP087677.1 Protein Homology CDS 1148813 1149142 . - 0 ID=cds-WP_038271224.1;Parent=gene-LPH39_RS04625;Dbxref=Genbank:WP_038271224.1;Name=WP_038271224.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017408.2;locus_tag=LPH39_RS04625;product=DUF769 domain-containing protein;protein_id=WP_038271224.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1149207 1149629 . - . ID=gene-LPH39_RS04630;Name=LPH39_RS04630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04630;old_locus_tag=LPH39_04630 NZ_CP087677.1 GeneMarkS-2+ CDS 1149207 1149629 . - 0 ID=cds-WP_038271223.1;Parent=gene-LPH39_RS04630;Dbxref=Genbank:WP_038271223.1;Name=WP_038271223.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04630;product=hypothetical protein;protein_id=WP_038271223.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1149626 1150801 . - . ID=gene-LPH39_RS04635;Name=LPH39_RS04635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04635;old_locus_tag=LPH39_04635 NZ_CP087677.1 Protein Homology CDS 1149626 1150801 . - 0 ID=cds-WP_205395219.1;Parent=gene-LPH39_RS04635;Dbxref=Genbank:WP_205395219.1;Name=WP_205395219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382788.1;locus_tag=LPH39_RS04635;product=DNA/RNA non-specific endonuclease;protein_id=WP_205395219.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1151236 1151625 . - . ID=gene-LPH39_RS04640;Name=LPH39_RS04640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04640;old_locus_tag=LPH39_04640 NZ_CP087677.1 Protein Homology CDS 1151236 1151625 . - 0 ID=cds-WP_038273210.1;Parent=gene-LPH39_RS04640;Dbxref=Genbank:WP_038273210.1;Name=WP_038273210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH39_RS04640;product=DUF596 domain-containing protein;protein_id=WP_038273210.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1151637 1151891 . - . ID=gene-LPH39_RS04645;Name=LPH39_RS04645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04645;old_locus_tag=LPH39_04645 NZ_CP087677.1 Protein Homology CDS 1151637 1151891 . - 0 ID=cds-WP_230428252.1;Parent=gene-LPH39_RS04645;Dbxref=Genbank:WP_230428252.1;Name=WP_230428252.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017408.2;locus_tag=LPH39_RS04645;product=hemagglutinin;protein_id=WP_230428252.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1152135 1152533 . - . ID=gene-LPH39_RS04650;Name=LPH39_RS04650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04650;old_locus_tag=LPH39_04650 NZ_CP087677.1 Protein Homology CDS 1152135 1152533 . - 0 ID=cds-WP_038273203.1;Parent=gene-LPH39_RS04650;Dbxref=Genbank:WP_038273203.1;Name=WP_038273203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH39_RS04650;product=DUF596 domain-containing protein;protein_id=WP_038273203.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1152545 1153678 . - . ID=gene-LPH39_RS04655;Name=LPH39_RS04655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04655;old_locus_tag=LPH39_04655 NZ_CP087677.1 Protein Homology CDS 1152545 1153678 . - 0 ID=cds-WP_114867194.1;Parent=gene-LPH39_RS04655;Dbxref=Genbank:WP_114867194.1;Name=WP_114867194.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382788.1;locus_tag=LPH39_RS04655;product=DUF769 domain-containing protein;protein_id=WP_114867194.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1153832 1154389 . - . ID=gene-LPH39_RS04660;Name=LPH39_RS04660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04660;old_locus_tag=LPH39_04660 NZ_CP087677.1 GeneMarkS-2+ CDS 1153832 1154389 . - 0 ID=cds-WP_038273296.1;Parent=gene-LPH39_RS04660;Dbxref=Genbank:WP_038273296.1;Name=WP_038273296.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04660;product=hypothetical protein;protein_id=WP_038273296.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1154386 1164063 . - . ID=gene-LPH39_RS04665;Name=LPH39_RS04665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04665;old_locus_tag=LPH39_04665 NZ_CP087677.1 Protein Homology CDS 1154386 1164063 . - 0 ID=cds-WP_171898066.1;Parent=gene-LPH39_RS04665;Dbxref=Genbank:WP_171898066.1;Name=WP_171898066.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024728.2;locus_tag=LPH39_RS04665;product=hemagglutinin repeat-containing protein;protein_id=WP_171898066.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1164023 1165393 . - . ID=gene-LPH39_RS04670;Name=LPH39_RS04670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04670;old_locus_tag=LPH39_04670 NZ_CP087677.1 Protein Homology CDS 1164023 1165393 . - 0 ID=cds-WP_114867153.1-3;Parent=gene-LPH39_RS04670;Dbxref=Genbank:WP_114867153.1;Name=WP_114867153.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017658.2;locus_tag=LPH39_RS04670;product=filamentous hemagglutinin N-terminal domain-containing protein;protein_id=WP_114867153.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1165915 1166241 . + . ID=gene-LPH39_RS04675;Name=LPH39_RS04675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04675;old_locus_tag=LPH39_04675 NZ_CP087677.1 GeneMarkS-2+ CDS 1165915 1166241 . + 0 ID=cds-WP_201745751.1;Parent=gene-LPH39_RS04675;Dbxref=Genbank:WP_201745751.1;Name=WP_201745751.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04675;product=hypothetical protein;protein_id=WP_201745751.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1166267 1167187 . - . ID=gene-LPH39_RS04680;Name=LPH39_RS04680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04680;old_locus_tag=LPH39_04680 NZ_CP087677.1 GeneMarkS-2+ CDS 1166267 1167187 . - 0 ID=cds-WP_160165228.1;Parent=gene-LPH39_RS04680;Dbxref=Genbank:WP_160165228.1;Name=WP_160165228.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04680;product=hypothetical protein;protein_id=WP_160165228.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1167073 1167531 . - . ID=gene-LPH39_RS04685;Name=LPH39_RS04685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04685;old_locus_tag=LPH39_04685 NZ_CP087677.1 GeneMarkS-2+ CDS 1167073 1167531 . - 0 ID=cds-WP_152536667.1;Parent=gene-LPH39_RS04685;Dbxref=Genbank:WP_152536667.1;Name=WP_152536667.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04685;product=hypothetical protein;protein_id=WP_152536667.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1167594 1167734 . - . ID=gene-LPH39_RS04690;Name=LPH39_RS04690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04690;old_locus_tag=LPH39_04690 NZ_CP087677.1 GeneMarkS-2+ CDS 1167594 1167734 . - 0 ID=cds-WP_162814110.1;Parent=gene-LPH39_RS04690;Dbxref=Genbank:WP_162814110.1;Name=WP_162814110.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04690;product=hypothetical protein;protein_id=WP_162814110.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1168044 1168991 . - . ID=gene-LPH39_RS04695;Name=LPH39_RS04695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04695;old_locus_tag=LPH39_04695 NZ_CP087677.1 Protein Homology CDS 1168044 1168991 . - 0 ID=cds-WP_038272973.1;Parent=gene-LPH39_RS04695;Dbxref=Genbank:WP_038272973.1;Name=WP_038272973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087430.1;locus_tag=LPH39_RS04695;product=COG2958 family protein;protein_id=WP_038272973.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1169003 1169227 . - . ID=gene-LPH39_RS04700;Name=LPH39_RS04700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04700;old_locus_tag=LPH39_04700 NZ_CP087677.1 GeneMarkS-2+ CDS 1169003 1169227 . - 0 ID=cds-WP_152536668.1;Parent=gene-LPH39_RS04700;Dbxref=Genbank:WP_152536668.1;Name=WP_152536668.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04700;product=hypothetical protein;protein_id=WP_152536668.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1169863 1170234 . - . ID=gene-LPH39_RS04705;Name=LPH39_RS04705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04705;old_locus_tag=LPH39_04705 NZ_CP087677.1 GeneMarkS-2+ CDS 1169863 1170234 . - 0 ID=cds-WP_200866219.1;Parent=gene-LPH39_RS04705;Dbxref=Genbank:WP_200866219.1;Name=WP_200866219.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04705;product=hypothetical protein;protein_id=WP_200866219.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1170279 1173302 . - . ID=gene-LPH39_RS04710;Name=LPH39_RS04710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04710;old_locus_tag=LPH39_04710 NZ_CP087677.1 Protein Homology CDS 1170279 1173302 . - 0 ID=cds-WP_038272980.1;Parent=gene-LPH39_RS04710;Dbxref=Genbank:WP_038272980.1;Name=WP_038272980.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085623.1;locus_tag=LPH39_RS04710;product=type I restriction endonuclease subunit R;protein_id=WP_038272980.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1173299 1174471 . - . ID=gene-LPH39_RS04715;Name=LPH39_RS04715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04715;old_locus_tag=LPH39_04715 NZ_CP087677.1 Protein Homology CDS 1173299 1174471 . - 0 ID=cds-WP_038272982.1;Parent=gene-LPH39_RS04715;Dbxref=Genbank:WP_038272982.1;Name=WP_038272982.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895140.1;locus_tag=LPH39_RS04715;product=restriction endonuclease subunit S;protein_id=WP_038272982.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1174474 1174719 . - . ID=gene-LPH39_RS04720;Name=LPH39_RS04720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04720;old_locus_tag=LPH39_04720 NZ_CP087677.1 GeneMarkS-2+ CDS 1174474 1174719 . - 0 ID=cds-WP_038272984.1;Parent=gene-LPH39_RS04720;Dbxref=Genbank:WP_038272984.1;Name=WP_038272984.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04720;product=hypothetical protein;protein_id=WP_038272984.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1174716 1176296 . - . ID=gene-LPH39_RS04725;Name=LPH39_RS04725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04725;old_locus_tag=LPH39_04725 NZ_CP087677.1 Protein Homology CDS 1174716 1176296 . - 0 ID=cds-WP_038272985.1;Parent=gene-LPH39_RS04725;Dbxref=Genbank:WP_038272985.1;Name=WP_038272985.1;Ontology_term=GO:0006306,GO:0009307,GO:0009007,GO:0015666;gbkey=CDS;go_function=site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA,restriction endodeoxyribonuclease activity|0015666||IEA;go_process=DNA methylation|0006306||IEA,DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852131.1;locus_tag=LPH39_RS04725;product=type I restriction-modification system subunit M;protein_id=WP_038272985.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1176341 1176667 . + . ID=gene-LPH39_RS04730;Name=LPH39_RS04730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04730;old_locus_tag=LPH39_04730 NZ_CP087677.1 GeneMarkS-2+ CDS 1176341 1176667 . + 0 ID=cds-WP_160165231.1;Parent=gene-LPH39_RS04730;Dbxref=Genbank:WP_160165231.1;Name=WP_160165231.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04730;product=hypothetical protein;protein_id=WP_160165231.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1176689 1176886 . - . ID=gene-LPH39_RS04735;Name=LPH39_RS04735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04735;old_locus_tag=LPH39_04735 NZ_CP087677.1 GeneMarkS-2+ CDS 1176689 1176886 . - 0 ID=cds-WP_038272989.1;Parent=gene-LPH39_RS04735;Dbxref=Genbank:WP_038272989.1;Name=WP_038272989.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04735;product=hypothetical protein;protein_id=WP_038272989.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1176895 1177350 . - . ID=gene-LPH39_RS04740;Name=LPH39_RS04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04740;old_locus_tag=LPH39_04740 NZ_CP087677.1 GeneMarkS-2+ CDS 1176895 1177350 . - 0 ID=cds-WP_038272991.1;Parent=gene-LPH39_RS04740;Dbxref=Genbank:WP_038272991.1;Name=WP_038272991.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04740;product=hypothetical protein;protein_id=WP_038272991.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1177528 1177734 . - . ID=gene-LPH39_RS04745;Name=LPH39_RS04745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04745;old_locus_tag=LPH39_04745 NZ_CP087677.1 GeneMarkS-2+ CDS 1177528 1177734 . - 0 ID=cds-WP_114867196.1;Parent=gene-LPH39_RS04745;Dbxref=Genbank:WP_114867196.1;Name=WP_114867196.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04745;product=hypothetical protein;protein_id=WP_114867196.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1177731 1177937 . - . ID=gene-LPH39_RS04750;Name=LPH39_RS04750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04750;old_locus_tag=LPH39_04750 NZ_CP087677.1 GeneMarkS-2+ CDS 1177731 1177937 . - 0 ID=cds-WP_162814111.1;Parent=gene-LPH39_RS04750;Dbxref=Genbank:WP_162814111.1;Name=WP_162814111.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04750;product=hypothetical protein;protein_id=WP_162814111.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1177972 1178160 . - . ID=gene-LPH39_RS04755;Name=LPH39_RS04755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04755;old_locus_tag=LPH39_04755 NZ_CP087677.1 GeneMarkS-2+ CDS 1177972 1178160 . - 0 ID=cds-WP_114867197.1;Parent=gene-LPH39_RS04755;Dbxref=Genbank:WP_114867197.1;Name=WP_114867197.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04755;product=hypothetical protein;protein_id=WP_114867197.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1178387 1179010 . + . ID=gene-LPH39_RS04760;Name=LPH39_RS04760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS04760;old_locus_tag=LPH39_04760;pseudo=true NZ_CP087677.1 Protein Homology CDS 1178387 1179010 . + 0 ID=cds-LPH39_RS04760;Parent=gene-LPH39_RS04760;Note=internal stop;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021498.2;locus_tag=LPH39_RS04760;product=DUF2220 domain-containing protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1179417 1179596 . - . ID=gene-LPH39_RS04765;Name=LPH39_RS04765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04765;old_locus_tag=LPH39_04765 NZ_CP087677.1 GeneMarkS-2+ CDS 1179417 1179596 . - 0 ID=cds-WP_038273245.1;Parent=gene-LPH39_RS04765;Dbxref=Genbank:WP_038273245.1;Name=WP_038273245.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04765;product=hypothetical protein;protein_id=WP_038273245.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1179675 1179992 . - . ID=gene-LPH39_RS04770;Name=LPH39_RS04770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04770;old_locus_tag=LPH39_04770 NZ_CP087677.1 GeneMarkS-2+ CDS 1179675 1179992 . - 0 ID=cds-WP_160199317.1;Parent=gene-LPH39_RS04770;Dbxref=Genbank:WP_160199317.1;Name=WP_160199317.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04770;product=hypothetical protein;protein_id=WP_160199317.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1179985 1180170 . - . ID=gene-LPH39_RS04775;Name=LPH39_RS04775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04775;old_locus_tag=LPH39_04775 NZ_CP087677.1 GeneMarkS-2+ CDS 1179985 1180170 . - 0 ID=cds-WP_230439355.1;Parent=gene-LPH39_RS04775;Dbxref=Genbank:WP_230439355.1;Name=WP_230439355.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04775;product=hypothetical protein;protein_id=WP_230439355.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1180285 1180551 . + . ID=gene-LPH39_RS04780;Name=LPH39_RS04780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04780;old_locus_tag=LPH39_04780 NZ_CP087677.1 GeneMarkS-2+ CDS 1180285 1180551 . + 0 ID=cds-WP_152536660.1;Parent=gene-LPH39_RS04780;Dbxref=Genbank:WP_152536660.1;Name=WP_152536660.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04780;product=hypothetical protein;protein_id=WP_152536660.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1180548 1180766 . + . ID=gene-LPH39_RS04785;Name=LPH39_RS04785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04785;old_locus_tag=LPH39_04785 NZ_CP087677.1 GeneMarkS-2+ CDS 1180548 1180766 . + 0 ID=cds-WP_038272773.1;Parent=gene-LPH39_RS04785;Dbxref=Genbank:WP_038272773.1;Name=WP_038272773.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04785;product=hypothetical protein;protein_id=WP_038272773.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1180784 1181596 . - . ID=gene-LPH39_RS04790;Name=LPH39_RS04790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04790;old_locus_tag=LPH39_04790 NZ_CP087677.1 Protein Homology CDS 1180784 1181596 . - 0 ID=cds-WP_038272775.1;Parent=gene-LPH39_RS04790;Dbxref=Genbank:WP_038272775.1;Name=WP_038272775.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014899.2;locus_tag=LPH39_RS04790;product=class III extradiol ring-cleavage dioxygenase;protein_id=WP_038272775.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1181762 1181911 . - . ID=gene-LPH39_RS04795;Name=LPH39_RS04795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04795;old_locus_tag=LPH39_04795 NZ_CP087677.1 Protein Homology CDS 1181762 1181911 . - 0 ID=cds-WP_230428254.1;Parent=gene-LPH39_RS04795;Dbxref=Genbank:WP_230428254.1;Name=WP_230428254.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012464.2;locus_tag=LPH39_RS04795;product=hypothetical protein;protein_id=WP_230428254.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1181908 1182045 . - . ID=gene-LPH39_RS04800;Name=LPH39_RS04800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04800;old_locus_tag=LPH39_04800 NZ_CP087677.1 GeneMarkS-2+ CDS 1181908 1182045 . - 0 ID=cds-WP_230428255.1;Parent=gene-LPH39_RS04800;Dbxref=Genbank:WP_230428255.1;Name=WP_230428255.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04800;product=hypothetical protein;protein_id=WP_230428255.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1182053 1182361 . - . ID=gene-LPH39_RS04805;Name=LPH39_RS04805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04805;old_locus_tag=LPH39_04805 NZ_CP087677.1 GeneMarkS-2+ CDS 1182053 1182361 . - 0 ID=cds-WP_038272777.1;Parent=gene-LPH39_RS04805;Dbxref=Genbank:WP_038272777.1;Name=WP_038272777.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04805;product=hypothetical protein;protein_id=WP_038272777.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1182555 1183040 . + . ID=gene-LPH39_RS04810;Name=LPH39_RS04810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04810;old_locus_tag=LPH39_04810 NZ_CP087677.1 GeneMarkS-2+ CDS 1182555 1183040 . + 0 ID=cds-WP_038272779.1;Parent=gene-LPH39_RS04810;Dbxref=Genbank:WP_038272779.1;Name=WP_038272779.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04810;product=hypothetical protein;protein_id=WP_038272779.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1183200 1186190 . - . ID=gene-LPH39_RS04815;Name=LPH39_RS04815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04815;old_locus_tag=LPH39_04815 NZ_CP087677.1 Protein Homology CDS 1183200 1186190 . - 0 ID=cds-WP_038272782.1;Parent=gene-LPH39_RS04815;Dbxref=Genbank:WP_038272782.1;Name=WP_038272782.1;Ontology_term=GO:0009307,GO:0009035,GO:0019812;gbkey=CDS;go_component=type I site-specific deoxyribonuclease complex|0019812||IEA;go_function=type I site-specific deoxyribonuclease activity|0009035||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161163.1;locus_tag=LPH39_RS04815;product=HsdR family type I site-specific deoxyribonuclease;protein_id=WP_038272782.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1186193 1187347 . - . ID=gene-LPH39_RS04820;Name=LPH39_RS04820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04820;old_locus_tag=LPH39_04820 NZ_CP087677.1 Protein Homology CDS 1186193 1187347 . - 0 ID=cds-WP_081755486.1;Parent=gene-LPH39_RS04820;Dbxref=Genbank:WP_081755486.1;Name=WP_081755486.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: protein motif:HMM:NF013579.2;locus_tag=LPH39_RS04820;product=restriction endonuclease subunit S;protein_id=WP_081755486.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1187340 1188866 . - . ID=gene-LPH39_RS04825;Name=LPH39_RS04825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04825;old_locus_tag=LPH39_04825 NZ_CP087677.1 Protein Homology CDS 1187340 1188866 . - 0 ID=cds-WP_038272784.1;Parent=gene-LPH39_RS04825;Dbxref=Genbank:WP_038272784.1;Name=WP_038272784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161165.1;locus_tag=LPH39_RS04825;product=class I SAM-dependent DNA methyltransferase;protein_id=WP_038272784.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1188863 1190365 . - . ID=gene-LPH39_RS04830;Name=LPH39_RS04830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04830;old_locus_tag=LPH39_04830 NZ_CP087677.1 Protein Homology CDS 1188863 1190365 . - 0 ID=cds-WP_038272787.1;Parent=gene-LPH39_RS04830;Dbxref=Genbank:WP_038272787.1;Name=WP_038272787.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161167.1;locus_tag=LPH39_RS04830;product=class I SAM-dependent DNA methyltransferase;protein_id=WP_038272787.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1190434 1190583 . - . ID=gene-LPH39_RS04835;Name=LPH39_RS04835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04835;old_locus_tag=LPH39_04835 NZ_CP087677.1 GeneMarkS-2+ CDS 1190434 1190583 . - 0 ID=cds-WP_200866214.1;Parent=gene-LPH39_RS04835;Dbxref=Genbank:WP_200866214.1;Name=WP_200866214.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04835;product=hypothetical protein;protein_id=WP_200866214.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1190964 1191206 . + . ID=gene-LPH39_RS04840;Name=LPH39_RS04840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04840;old_locus_tag=LPH39_04840 NZ_CP087677.1 GeneMarkS-2+ CDS 1190964 1191206 . + 0 ID=cds-WP_160165223.1;Parent=gene-LPH39_RS04840;Dbxref=Genbank:WP_160165223.1;Name=WP_160165223.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04840;product=hypothetical protein;protein_id=WP_160165223.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1191209 1192099 . + . ID=gene-LPH39_RS04845;Name=LPH39_RS04845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04845;old_locus_tag=LPH39_04845 NZ_CP087677.1 Protein Homology CDS 1191209 1192099 . + 0 ID=cds-WP_038272792.1;Parent=gene-LPH39_RS04845;Dbxref=Genbank:WP_038272792.1;Name=WP_038272792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085602.1;locus_tag=LPH39_RS04845;product=hypothetical protein;protein_id=WP_038272792.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1192239 1193109 . + . ID=gene-LPH39_RS04850;Name=LPH39_RS04850;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS04850;old_locus_tag=LPH39_04850;pseudo=true NZ_CP087677.1 Protein Homology CDS 1192239 1193109 . + 0 ID=cds-LPH39_RS04850;Parent=gene-LPH39_RS04850;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085602.1;locus_tag=LPH39_RS04850;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1193273 1193737 . + . ID=gene-LPH39_RS04855;Name=LPH39_RS04855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04855;old_locus_tag=LPH39_04855 NZ_CP087677.1 Protein Homology CDS 1193273 1193737 . + 0 ID=cds-WP_038272801.1;Parent=gene-LPH39_RS04855;Dbxref=Genbank:WP_038272801.1;Name=WP_038272801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895168.1;locus_tag=LPH39_RS04855;product=hypothetical protein;protein_id=WP_038272801.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1193844 1194125 . + . ID=gene-LPH39_RS04860;Name=LPH39_RS04860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04860;old_locus_tag=LPH39_04860 NZ_CP087677.1 GeneMarkS-2+ CDS 1193844 1194125 . + 0 ID=cds-WP_230428256.1;Parent=gene-LPH39_RS04860;Dbxref=Genbank:WP_230428256.1;Name=WP_230428256.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04860;product=hypothetical protein;protein_id=WP_230428256.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1194321 1194899 . + . ID=gene-LPH39_RS04865;Name=LPH39_RS04865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04865;old_locus_tag=LPH39_04865 NZ_CP087677.1 Protein Homology CDS 1194321 1194899 . + 0 ID=cds-WP_038272794.1;Parent=gene-LPH39_RS04865;Dbxref=Genbank:WP_038272794.1;Name=WP_038272794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085600.1;locus_tag=LPH39_RS04865;product=DUF5625 family protein;protein_id=WP_038272794.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1195056 1195520 . + . ID=gene-LPH39_RS04870;Name=LPH39_RS04870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04870;old_locus_tag=LPH39_04870 NZ_CP087677.1 Protein Homology CDS 1195056 1195520 . + 0 ID=cds-WP_038272796.1;Parent=gene-LPH39_RS04870;Dbxref=Genbank:WP_038272796.1;Name=WP_038272796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895168.1;locus_tag=LPH39_RS04870;product=hypothetical protein;protein_id=WP_038272796.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1195559 1200022 . + . ID=gene-LPH39_RS04875;Name=LPH39_RS04875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04875;old_locus_tag=LPH39_04875 NZ_CP087677.1 Protein Homology CDS 1195559 1200022 . + 0 ID=cds-WP_160199316.1;Parent=gene-LPH39_RS04875;Dbxref=Genbank:WP_160199316.1;Name=WP_160199316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085599.1;locus_tag=LPH39_RS04875;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=WP_160199316.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1201012 1201236 . + . ID=gene-LPH39_RS04890;Name=LPH39_RS04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04890;old_locus_tag=LPH39_04890 NZ_CP087677.1 GeneMarkS-2+ CDS 1201012 1201236 . + 0 ID=cds-WP_152536561.1;Parent=gene-LPH39_RS04890;Dbxref=Genbank:WP_152536561.1;Name=WP_152536561.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04890;product=hypothetical protein;protein_id=WP_152536561.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1202105 1202866 . - . ID=gene-LPH39_RS04895;Name=LPH39_RS04895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04895;old_locus_tag=LPH39_04895 NZ_CP087677.1 Protein Homology CDS 1202105 1202866 . - 0 ID=cds-WP_038269876.1;Parent=gene-LPH39_RS04895;Dbxref=Genbank:WP_038269876.1;Name=WP_038269876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927840.1;locus_tag=LPH39_RS04895;product=Bax inhibitor-1/YccA family protein;protein_id=WP_038269876.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1203040 1203116 . + . ID=gene-LPH39_RS04900;Name=LPH39_RS04900;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS04900;old_locus_tag=LPH39_04900 NZ_CP087677.1 tRNAscan-SE tRNA 1203040 1203116 . + . ID=rna-LPH39_RS04900;Parent=gene-LPH39_RS04900;anticodon=(pos:1203074..1203076);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04900;product=tRNA-Pro NZ_CP087677.1 tRNAscan-SE exon 1203040 1203116 . + . ID=exon-LPH39_RS04900-1;Parent=rna-LPH39_RS04900;anticodon=(pos:1203074..1203076);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04900;product=tRNA-Pro NZ_CP087677.1 RefSeq gene 1203191 1203269 . + . ID=gene-LPH39_RS04905;Name=LPH39_RS04905;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS04905;old_locus_tag=LPH39_04905 NZ_CP087677.1 tRNAscan-SE tRNA 1203191 1203269 . + . ID=rna-LPH39_RS04905;Parent=gene-LPH39_RS04905;anticodon=(pos:1203227..1203229);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04905;product=tRNA-Arg NZ_CP087677.1 tRNAscan-SE exon 1203191 1203269 . + . ID=exon-LPH39_RS04905-1;Parent=rna-LPH39_RS04905;anticodon=(pos:1203227..1203229);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04905;product=tRNA-Arg NZ_CP087677.1 RefSeq gene 1203309 1203385 . + . ID=gene-LPH39_RS04910;Name=LPH39_RS04910;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS04910;old_locus_tag=LPH39_04910 NZ_CP087677.1 tRNAscan-SE tRNA 1203309 1203385 . + . ID=rna-LPH39_RS04910;Parent=gene-LPH39_RS04910;anticodon=(pos:1203343..1203345);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04910;product=tRNA-His NZ_CP087677.1 tRNAscan-SE exon 1203309 1203385 . + . ID=exon-LPH39_RS04910-1;Parent=rna-LPH39_RS04910;anticodon=(pos:1203343..1203345);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04910;product=tRNA-His NZ_CP087677.1 RefSeq gene 1203487 1203562 . + . ID=gene-LPH39_RS04915;Name=LPH39_RS04915;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS04915;old_locus_tag=LPH39_04915 NZ_CP087677.1 tRNAscan-SE tRNA 1203487 1203562 . + . ID=rna-LPH39_RS04915;Parent=gene-LPH39_RS04915;anticodon=(pos:1203520..1203522);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04915;product=tRNA-Lys NZ_CP087677.1 tRNAscan-SE exon 1203487 1203562 . + . ID=exon-LPH39_RS04915-1;Parent=rna-LPH39_RS04915;anticodon=(pos:1203520..1203522);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS04915;product=tRNA-Lys NZ_CP087677.1 RefSeq gene 1203566 1203757 . - . ID=gene-LPH39_RS04920;Name=LPH39_RS04920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04920;old_locus_tag=LPH39_04920 NZ_CP087677.1 GeneMarkS-2+ CDS 1203566 1203757 . - 0 ID=cds-WP_038269875.1;Parent=gene-LPH39_RS04920;Dbxref=Genbank:WP_038269875.1;Name=WP_038269875.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04920;product=hypothetical protein;protein_id=WP_038269875.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1204284 1204529 . - . ID=gene-LPH39_RS04925;Name=LPH39_RS04925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04925;old_locus_tag=LPH39_04925 NZ_CP087677.1 GeneMarkS-2+ CDS 1204284 1204529 . - 0 ID=cds-WP_152536560.1;Parent=gene-LPH39_RS04925;Dbxref=Genbank:WP_152536560.1;Name=WP_152536560.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04925;product=hypothetical protein;protein_id=WP_152536560.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1204566 1204772 . - . ID=gene-LPH39_RS04930;Name=LPH39_RS04930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04930;old_locus_tag=LPH39_04930 NZ_CP087677.1 GeneMarkS-2+ CDS 1204566 1204772 . - 0 ID=cds-WP_200866176.1;Parent=gene-LPH39_RS04930;Dbxref=Genbank:WP_200866176.1;Name=WP_200866176.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04930;product=hypothetical protein;protein_id=WP_200866176.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1204778 1204975 . - . ID=gene-LPH39_RS04935;Name=LPH39_RS04935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04935;old_locus_tag=LPH39_04935 NZ_CP087677.1 GeneMarkS-2+ CDS 1204778 1204975 . - 0 ID=cds-WP_200866175.1;Parent=gene-LPH39_RS04935;Dbxref=Genbank:WP_200866175.1;Name=WP_200866175.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS04935;product=hypothetical protein;protein_id=WP_200866175.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1205167 1205628 . - . ID=gene-LPH39_RS04940;Name=LPH39_RS04940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04940;old_locus_tag=LPH39_04940 NZ_CP087677.1 Protein Homology CDS 1205167 1205628 . - 0 ID=cds-WP_038269873.1;Parent=gene-LPH39_RS04940;Dbxref=Genbank:WP_038269873.1;Name=WP_038269873.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452058.1;locus_tag=LPH39_RS04940;product=helix-turn-helix domain-containing protein;protein_id=WP_038269873.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1205733 1206554 . + . ID=gene-LPH39_RS04945;Name=LPH39_RS04945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04945;old_locus_tag=LPH39_04945 NZ_CP087677.1 Protein Homology CDS 1205733 1206554 . + 0 ID=cds-WP_038269871.1;Parent=gene-LPH39_RS04945;Dbxref=Genbank:WP_038269871.1;Name=WP_038269871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018971963.1;locus_tag=LPH39_RS04945;product=oxidoreductase;protein_id=WP_038269871.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1207749 1210319 . - . ID=gene-LPH39_RS04950;Name=LPH39_RS04950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04950;old_locus_tag=LPH39_04950 NZ_CP087677.1 Protein Homology CDS 1207749 1210319 . - 0 ID=cds-WP_038269868.1;Parent=gene-LPH39_RS04950;Dbxref=Genbank:WP_038269868.1;Name=WP_038269868.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098254.1;locus_tag=LPH39_RS04950;product=glycosyltransferase family 1 protein;protein_id=WP_038269868.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1210316 1210546 . - . ID=gene-LPH39_RS04955;Name=LPH39_RS04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04955;old_locus_tag=LPH39_04955 NZ_CP087677.1 Protein Homology CDS 1210316 1210546 . - 0 ID=cds-WP_038269866.1;Parent=gene-LPH39_RS04955;Dbxref=Genbank:WP_038269866.1;Name=WP_038269866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852549.1;locus_tag=LPH39_RS04955;product=hypothetical protein;protein_id=WP_038269866.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1210568 1211896 . - . ID=gene-LPH39_RS04960;Name=LPH39_RS04960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04960;old_locus_tag=LPH39_04960 NZ_CP087677.1 Protein Homology CDS 1210568 1211896 . - 0 ID=cds-WP_038269863.1;Parent=gene-LPH39_RS04960;Dbxref=Genbank:WP_038269863.1;Name=WP_038269863.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088227.1;locus_tag=LPH39_RS04960;product=glycosyltransferase;protein_id=WP_038269863.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1211991 1214369 . + . ID=gene-LPH39_RS04965;Name=mrcB;gbkey=Gene;gene=mrcB;gene_biotype=protein_coding;locus_tag=LPH39_RS04965;old_locus_tag=LPH39_04965 NZ_CP087677.1 Protein Homology CDS 1211991 1214369 . + 0 ID=cds-WP_051482236.1;Parent=gene-LPH39_RS04965;Dbxref=Genbank:WP_051482236.1;Name=WP_051482236.1;Ontology_term=GO:0009252,GO:0046677,GO:0008233,GO:0008658,GO:0008955,GO:0009274;gbkey=CDS;gene=mrcB;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=peptidase activity|0008233||IEA,penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852547.1;locus_tag=LPH39_RS04965;product=penicillin-binding protein 1B;protein_id=WP_051482236.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1214366 1214917 . + . ID=gene-LPH39_RS04970;Name=LPH39_RS04970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04970;old_locus_tag=LPH39_04970 NZ_CP087677.1 Protein Homology CDS 1214366 1214917 . + 0 ID=cds-WP_038269860.1;Parent=gene-LPH39_RS04970;Dbxref=Genbank:WP_038269860.1;Name=WP_038269860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088223.1;locus_tag=LPH39_RS04970;product=hypothetical protein;protein_id=WP_038269860.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1215037 1217040 . + . ID=gene-LPH39_RS04975;Name=LPH39_RS04975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04975;old_locus_tag=LPH39_04975 NZ_CP087677.1 Protein Homology CDS 1215037 1217040 . + 0 ID=cds-WP_038269857.1;Parent=gene-LPH39_RS04975;Dbxref=Genbank:WP_038269857.1;Name=WP_038269857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338070.1;locus_tag=LPH39_RS04975;product=ATP-dependent DNA helicase;protein_id=WP_038269857.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1217060 1217605 . - . ID=gene-LPH39_RS04980;Name=LPH39_RS04980;end_range=1217605,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS04980;old_locus_tag=LPH39_04980;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1217060 1217605 . - 0 ID=cds-LPH39_RS04980;Parent=gene-LPH39_RS04980;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1217605,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574705.1;locus_tag=LPH39_RS04980;partial=true;product=D-alanyl-D-alanine carboxypeptidase family protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1218385 1219047 . - . ID=gene-LPH39_RS04985;Name=can;gbkey=Gene;gene=can;gene_biotype=protein_coding;locus_tag=LPH39_RS04985;old_locus_tag=LPH39_04985 NZ_CP087677.1 Protein Homology CDS 1218385 1219047 . - 0 ID=cds-WP_038269855.1;Parent=gene-LPH39_RS04985;Dbxref=Genbank:WP_038269855.1;Name=WP_038269855.1;Ontology_term=GO:0015976,GO:0004089,GO:0008270;gbkey=CDS;gene=can;go_function=carbonate dehydratase activity|0004089||IEA,zinc ion binding|0008270||IEA;go_process=carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902447.1;locus_tag=LPH39_RS04985;product=carbonate dehydratase;protein_id=WP_038269855.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1219774 1220886 . - . ID=gene-LPH39_RS04990;Name=LPH39_RS04990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04990;old_locus_tag=LPH39_04990 NZ_CP087677.1 Protein Homology CDS 1219774 1220886 . - 0 ID=cds-WP_038269853.1;Parent=gene-LPH39_RS04990;Dbxref=Genbank:WP_038269853.1;Name=WP_038269853.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893399.1;locus_tag=LPH39_RS04990;product=glycosyltransferase family 4 protein;protein_id=WP_038269853.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1220883 1221602 . - . ID=gene-LPH39_RS04995;Name=LPH39_RS04995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS04995;old_locus_tag=LPH39_04995 NZ_CP087677.1 Protein Homology CDS 1220883 1221602 . - 0 ID=cds-WP_038269943.1;Parent=gene-LPH39_RS04995;Dbxref=Genbank:WP_038269943.1;Name=WP_038269943.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098260.1;locus_tag=LPH39_RS04995;product=polysaccharide deacetylase family protein;protein_id=WP_038269943.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1221973 1222134 . + . ID=gene-LPH39_RS05000;Name=LPH39_RS05000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05000;old_locus_tag=LPH39_05000 NZ_CP087677.1 Protein Homology CDS 1221973 1222134 . + 0 ID=cds-WP_171898068.1;Parent=gene-LPH39_RS05000;Dbxref=Genbank:WP_171898068.1;Name=WP_171898068.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088209.1;locus_tag=LPH39_RS05000;product=hypothetical protein;protein_id=WP_171898068.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1223341 1224348 . + . ID=gene-LPH39_RS05005;Name=LPH39_RS05005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05005;old_locus_tag=LPH39_05005 NZ_CP087677.1 Protein Homology CDS 1223341 1224348 . + 0 ID=cds-WP_038269940.1;Parent=gene-LPH39_RS05005;Dbxref=Genbank:WP_038269940.1;Name=WP_038269940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038713.1;locus_tag=LPH39_RS05005;product=methionine ABC transporter ATP-binding protein;protein_id=WP_038269940.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1224345 1225052 . + . ID=gene-LPH39_RS05010;Name=LPH39_RS05010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05010;old_locus_tag=LPH39_05010 NZ_CP087677.1 Protein Homology CDS 1224345 1225052 . + 0 ID=cds-WP_051482234.1;Parent=gene-LPH39_RS05010;Dbxref=Genbank:WP_051482234.1;Name=WP_051482234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038712.1;locus_tag=LPH39_RS05010;product=ABC transporter permease;protein_id=WP_051482234.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1225150 1225935 . + . ID=gene-LPH39_RS05015;Name=LPH39_RS05015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05015;old_locus_tag=LPH39_05015 NZ_CP087677.1 Protein Homology CDS 1225150 1225935 . + 0 ID=cds-WP_038269848.1;Parent=gene-LPH39_RS05015;Dbxref=Genbank:WP_038269848.1;Name=WP_038269848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893393.1;locus_tag=LPH39_RS05015;product=MetQ/NlpA family ABC transporter substrate-binding protein;protein_id=WP_038269848.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1226033 1226677 . - . ID=gene-LPH39_RS05020;Name=LPH39_RS05020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05020;old_locus_tag=LPH39_05020 NZ_CP087677.1 Protein Homology CDS 1226033 1226677 . - 0 ID=cds-WP_038269846.1;Parent=gene-LPH39_RS05020;Dbxref=Genbank:WP_038269846.1;Name=WP_038269846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974312.1;locus_tag=LPH39_RS05020;product=outer membrane beta-barrel protein;protein_id=WP_038269846.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1227393 1227704 . + . ID=gene-LPH39_RS05025;Name=LPH39_RS05025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05025;old_locus_tag=LPH39_05025 NZ_CP087677.1 GeneMarkS-2+ CDS 1227393 1227704 . + 0 ID=cds-WP_038269844.1;Parent=gene-LPH39_RS05025;Dbxref=Genbank:WP_038269844.1;Name=WP_038269844.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05025;product=hypothetical protein;protein_id=WP_038269844.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1227896 1229548 . + . ID=gene-LPH39_RS05030;Name=aceF;gbkey=Gene;gene=aceF;gene_biotype=protein_coding;locus_tag=LPH39_RS05030;old_locus_tag=LPH39_05030 NZ_CP087677.1 Protein Homology CDS 1227896 1229548 . + 0 ID=cds-WP_038269842.1;Parent=gene-LPH39_RS05030;Dbxref=Genbank:WP_038269842.1;Name=WP_038269842.1;Ontology_term=GO:0006086,GO:0004742,GO:0045254;gbkey=CDS;gene=aceF;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=dihydrolipoyllysine-residue acetyltransferase activity|0004742||IEA;go_process=acetyl-CoA biosynthetic process from pyruvate|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893389.1;locus_tag=LPH39_RS05030;product=dihydrolipoyllysine-residue acetyltransferase;protein_id=WP_038269842.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1230118 1231929 . + . ID=gene-LPH39_RS05035;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=LPH39_RS05035;old_locus_tag=LPH39_05035 NZ_CP087677.1 Protein Homology CDS 1230118 1231929 . + 0 ID=cds-WP_038269840.1;Parent=gene-LPH39_RS05035;Dbxref=Genbank:WP_038269840.1;Name=WP_038269840.1;Ontology_term=GO:0006096,GO:0045454,GO:0051068,GO:0004148;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase activity|0004148||IEA;go_process=glycolytic process|0006096||IEA,cell redox homeostasis|0045454||IEA,dihydrolipoamide metabolic process|0051068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084365.1;locus_tag=LPH39_RS05035;product=dihydrolipoyl dehydrogenase;protein_id=WP_038269840.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1232223 1232351 . - . ID=gene-LPH39_RS12000;Name=LPH39_RS12000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12000 NZ_CP087677.1 GeneMarkS-2+ CDS 1232223 1232351 . - 0 ID=cds-WP_267903163.1;Parent=gene-LPH39_RS12000;Dbxref=Genbank:WP_267903163.1;Name=WP_267903163.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12000;product=hypothetical protein;protein_id=WP_267903163.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1232632 1233684 . + . ID=gene-LPH39_RS05040;Name=LPH39_RS05040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05040;old_locus_tag=LPH39_05040 NZ_CP087677.1 Protein Homology CDS 1232632 1233684 . + 0 ID=cds-WP_051482233.1;Parent=gene-LPH39_RS05040;Dbxref=Genbank:WP_051482233.1;Name=WP_051482233.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013884.2;locus_tag=LPH39_RS05040;product=acyltransferase;protein_id=WP_051482233.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1233892 1234794 . - . ID=gene-LPH39_RS05045;Name=LPH39_RS05045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05045;old_locus_tag=LPH39_05045 NZ_CP087677.1 Protein Homology CDS 1233892 1234794 . - 0 ID=cds-WP_038269838.1;Parent=gene-LPH39_RS05045;Dbxref=Genbank:WP_038269838.1;Name=WP_038269838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084369.1;locus_tag=LPH39_RS05045;product=cation diffusion facilitator family transporter;protein_id=WP_038269838.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1235356 1235541 . + . ID=gene-LPH39_RS05050;Name=LPH39_RS05050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05050;old_locus_tag=LPH39_05050 NZ_CP087677.1 GeneMarkS-2+ CDS 1235356 1235541 . + 0 ID=cds-WP_160199315.1;Parent=gene-LPH39_RS05050;Dbxref=Genbank:WP_160199315.1;Name=WP_160199315.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05050;product=hypothetical protein;protein_id=WP_160199315.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1236324 1237529 . - . ID=gene-LPH39_RS05055;Name=LPH39_RS05055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05055;old_locus_tag=LPH39_05055 NZ_CP087677.1 Protein Homology CDS 1236324 1237529 . - 0 ID=cds-WP_038269836.1;Parent=gene-LPH39_RS05055;Dbxref=Genbank:WP_038269836.1;Name=WP_038269836.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014038152.1;locus_tag=LPH39_RS05055;product=O-succinylhomoserine (thiol)-lyase;protein_id=WP_038269836.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1237526 1238554 . - . ID=gene-LPH39_RS05060;Name=LPH39_RS05060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05060;old_locus_tag=LPH39_05060 NZ_CP087677.1 Protein Homology CDS 1237526 1238554 . - 0 ID=cds-WP_038269931.1;Parent=gene-LPH39_RS05060;Dbxref=Genbank:WP_038269931.1;Name=WP_038269931.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084371.1;locus_tag=LPH39_RS05060;product=homoserine O-succinyltransferase;protein_id=WP_038269931.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1238875 1239747 . + . ID=gene-LPH39_RS05065;Name=LPH39_RS05065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05065;old_locus_tag=LPH39_05065 NZ_CP087677.1 Protein Homology CDS 1238875 1239747 . + 0 ID=cds-WP_038269928.1;Parent=gene-LPH39_RS05065;Dbxref=Genbank:WP_038269928.1;Name=WP_038269928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851712.1;locus_tag=LPH39_RS05065;product=M23 family metallopeptidase;protein_id=WP_038269928.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1240868 1241209 . + . ID=gene-LPH39_RS05070;Name=LPH39_RS05070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05070;old_locus_tag=LPH39_05070 NZ_CP087677.1 GeneMarkS-2+ CDS 1240868 1241209 . + 0 ID=cds-WP_038269832.1;Parent=gene-LPH39_RS05070;Dbxref=Genbank:WP_038269832.1;Name=WP_038269832.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05070;product=hypothetical protein;protein_id=WP_038269832.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1242163 1242951 . + . ID=gene-LPH39_RS05075;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=LPH39_RS05075;old_locus_tag=LPH39_05075 NZ_CP087677.1 Protein Homology CDS 1242163 1242951 . + 0 ID=cds-WP_038269831.1;Parent=gene-LPH39_RS05075;Dbxref=Genbank:WP_038269831.1;Name=WP_038269831.1;Ontology_term=GO:0008252;gbkey=CDS;gene=surE;go_function=nucleotidase activity|0008252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084374.1;locus_tag=LPH39_RS05075;product=5'/3'-nucleotidase SurE;protein_id=WP_038269831.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1242948 1243625 . + . ID=gene-LPH39_RS05080;Name=LPH39_RS05080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05080;old_locus_tag=LPH39_05080 NZ_CP087677.1 Protein Homology CDS 1242948 1243625 . + 0 ID=cds-WP_038269829.1;Parent=gene-LPH39_RS05080;Dbxref=Genbank:WP_038269829.1;Name=WP_038269829.1;Ontology_term=GO:0036211,GO:0004719;gbkey=CDS;go_function=protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|0004719||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503664.1;locus_tag=LPH39_RS05080;product=protein-L-isoaspartate(D-aspartate) O-methyltransferase;protein_id=WP_038269829.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1243650 1244264 . + . ID=gene-LPH39_RS05085;Name=LPH39_RS05085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05085;old_locus_tag=LPH39_05085 NZ_CP087677.1 Protein Homology CDS 1243650 1244264 . + 0 ID=cds-WP_038269827.1;Parent=gene-LPH39_RS05085;Dbxref=Genbank:WP_038269827.1;Name=WP_038269827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481846.1;locus_tag=LPH39_RS05085;product=YqaA family protein;protein_id=WP_038269827.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1244276 1245046 . + . ID=gene-LPH39_RS05090;Name=LPH39_RS05090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05090;old_locus_tag=LPH39_05090 NZ_CP087677.1 Protein Homology CDS 1244276 1245046 . + 0 ID=cds-WP_051482232.1;Parent=gene-LPH39_RS05090;Dbxref=Genbank:WP_051482232.1;Name=WP_051482232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088187.1;locus_tag=LPH39_RS05090;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=WP_051482232.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1245630 1245706 . + . ID=gene-LPH39_RS05095;Name=LPH39_RS05095;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS05095;old_locus_tag=LPH39_05095 NZ_CP087677.1 tRNAscan-SE tRNA 1245630 1245706 . + . ID=rna-LPH39_RS05095;Parent=gene-LPH39_RS05095;anticodon=(pos:1245664..1245666);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05095;product=tRNA-Pro NZ_CP087677.1 tRNAscan-SE exon 1245630 1245706 . + . ID=exon-LPH39_RS05095-1;Parent=rna-LPH39_RS05095;anticodon=(pos:1245664..1245666);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05095;product=tRNA-Pro NZ_CP087677.1 RefSeq pseudogene 1246780 1248255 . - . ID=gene-LPH39_RS05100;Name=LPH39_RS05100;end_range=1248255,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS05100;old_locus_tag=LPH39_05100;partial=true;pseudo=true;start_range=.,1246780 NZ_CP087677.1 Protein Homology CDS 1246780 1248255 . - 0 ID=cds-LPH39_RS05100;Parent=gene-LPH39_RS05100;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1248255,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157452.1;locus_tag=LPH39_RS05100;partial=true;product=PAS domain-containing sensor histidine kinase;pseudo=true;start_range=.,1246780;transl_table=11 NZ_CP087677.1 RefSeq gene 1248921 1250009 . - . ID=gene-LPH39_RS05105;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=LPH39_RS05105;old_locus_tag=LPH39_05105 NZ_CP087677.1 Protein Homology CDS 1248921 1250009 . - 0 ID=cds-WP_038269820.1;Parent=gene-LPH39_RS05105;Dbxref=Genbank:WP_038269820.1;Name=WP_038269820.1;Ontology_term=GO:0009252,GO:0008784;gbkey=CDS;gene=alr;go_function=alanine racemase activity|0008784||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088182.1;locus_tag=LPH39_RS05105;product=alanine racemase;protein_id=WP_038269820.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1250022 1251296 . - . ID=gene-LPH39_RS05110;Name=LPH39_RS05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05110;old_locus_tag=LPH39_05110 NZ_CP087677.1 Protein Homology CDS 1250022 1251296 . - 0 ID=cds-WP_038269817.1;Parent=gene-LPH39_RS05110;Dbxref=Genbank:WP_038269817.1;Name=WP_038269817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088180.1;locus_tag=LPH39_RS05110;product=D-amino acid dehydrogenase;protein_id=WP_038269817.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1251604 1251762 . - . ID=gene-LPH39_RS05115;Name=LPH39_RS05115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05115;old_locus_tag=LPH39_05115 NZ_CP087677.1 GeneMarkS-2+ CDS 1251604 1251762 . - 0 ID=cds-WP_160165111.1;Parent=gene-LPH39_RS05115;Dbxref=Genbank:WP_160165111.1;Name=WP_160165111.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05115;product=hypothetical protein;protein_id=WP_160165111.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1251779 1252246 . + . ID=gene-LPH39_RS05120;Name=msrB;gbkey=Gene;gene=msrB;gene_biotype=protein_coding;locus_tag=LPH39_RS05120;old_locus_tag=LPH39_05120 NZ_CP087677.1 Protein Homology CDS 1251779 1252246 . + 0 ID=cds-WP_038269923.1;Parent=gene-LPH39_RS05120;Dbxref=Genbank:WP_038269923.1;Name=WP_038269923.1;Ontology_term=GO:0006979,GO:0030091,GO:0033743;gbkey=CDS;gene=msrB;go_function=peptide-methionine (R)-S-oxide reductase activity|0033743||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088178.1;locus_tag=LPH39_RS05120;product=peptide-methionine (R)-S-oxide reductase MsrB;protein_id=WP_038269923.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1252837 1253892 . + . ID=gene-LPH39_RS05125;Name=LPH39_RS05125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05125;old_locus_tag=LPH39_05125 NZ_CP087677.1 Protein Homology CDS 1252837 1253892 . + 0 ID=cds-WP_038269813.1;Parent=gene-LPH39_RS05125;Dbxref=Genbank:WP_038269813.1;Name=WP_038269813.1;Ontology_term=GO:0005975;gbkey=CDS;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970189.1;locus_tag=LPH39_RS05125;product=glycosyl hydrolase family 18 protein;protein_id=WP_038269813.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1253976 1256411 . + . ID=gene-LPH39_RS05130;Name=LPH39_RS05130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05130;old_locus_tag=LPH39_05130 NZ_CP087677.1 Protein Homology CDS 1253976 1256411 . + 0 ID=cds-WP_038269811.1;Parent=gene-LPH39_RS05130;Dbxref=Genbank:WP_038269811.1;Name=WP_038269811.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851724.1;locus_tag=LPH39_RS05130;product=family 20 glycosylhydrolase;protein_id=WP_038269811.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1256432 1259113 . + . ID=gene-LPH39_RS05135;Name=LPH39_RS05135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05135;old_locus_tag=LPH39_05135 NZ_CP087677.1 Protein Homology CDS 1256432 1259113 . + 0 ID=cds-WP_038269809.1;Parent=gene-LPH39_RS05135;Dbxref=Genbank:WP_038269809.1;Name=WP_038269809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088171.1;locus_tag=LPH39_RS05135;product=glycoside hydrolase family 2 protein;protein_id=WP_038269809.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1259159 1261813 . + . ID=gene-LPH39_RS05140;Name=LPH39_RS05140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05140;old_locus_tag=LPH39_05140 NZ_CP087677.1 Protein Homology CDS 1259159 1261813 . + 0 ID=cds-WP_038269807.1;Parent=gene-LPH39_RS05140;Dbxref=Genbank:WP_038269807.1;Name=WP_038269807.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338083.1;locus_tag=LPH39_RS05140;product=glycoside hydrolase family 3 protein;protein_id=WP_038269807.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1261940 1262086 . + . ID=gene-LPH39_RS05145;Name=LPH39_RS05145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05145;old_locus_tag=LPH39_05145 NZ_CP087677.1 GeneMarkS-2+ CDS 1261940 1262086 . + 0 ID=cds-WP_160165110.1;Parent=gene-LPH39_RS05145;Dbxref=Genbank:WP_160165110.1;Name=WP_160165110.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05145;product=hypothetical protein;protein_id=WP_160165110.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1262195 1263721 . + . ID=gene-LPH39_RS05150;Name=LPH39_RS05150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05150;old_locus_tag=LPH39_05150 NZ_CP087677.1 Protein Homology CDS 1262195 1263721 . + 0 ID=cds-WP_038269805.1;Parent=gene-LPH39_RS05150;Dbxref=Genbank:WP_038269805.1;Name=WP_038269805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084411.1;locus_tag=LPH39_RS05150;product=glycoside hydrolase family 125 protein;protein_id=WP_038269805.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1263779 1266175 . + . ID=gene-LPH39_RS05155;Name=LPH39_RS05155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05155;old_locus_tag=LPH39_05155 NZ_CP087677.1 Protein Homology CDS 1263779 1266175 . + 0 ID=cds-WP_038269803.1;Parent=gene-LPH39_RS05155;Dbxref=Genbank:WP_038269803.1;Name=WP_038269803.1;Ontology_term=GO:0005975,GO:0030246;gbkey=CDS;go_function=carbohydrate binding|0030246||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084413.1;locus_tag=LPH39_RS05155;product=GH92 family glycosyl hydrolase;protein_id=WP_038269803.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1266361 1268241 . + . ID=gene-LPH39_RS05160;Name=LPH39_RS05160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05160;old_locus_tag=LPH39_05160 NZ_CP087677.1 Protein Homology CDS 1266361 1268241 . + 0 ID=cds-WP_051482231.1;Parent=gene-LPH39_RS05160;Dbxref=Genbank:WP_051482231.1;Name=WP_051482231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348229.1;locus_tag=LPH39_RS05160;product=beta-galactosidase;protein_id=WP_051482231.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1268531 1269523 . - . ID=gene-LPH39_RS05165;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=LPH39_RS05165;old_locus_tag=LPH39_05165 NZ_CP087677.1 Protein Homology CDS 1268531 1269523 . - 0 ID=cds-WP_038269801.1;Parent=gene-LPH39_RS05165;Dbxref=Genbank:WP_038269801.1;Name=WP_038269801.1;Ontology_term=GO:0008615,GO:0050570;gbkey=CDS;gene=pdxA;go_function=4-hydroxythreonine-4-phosphate dehydrogenase activity|0050570||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893359.1;locus_tag=LPH39_RS05165;product=4-hydroxythreonine-4-phosphate dehydrogenase PdxA;protein_id=WP_038269801.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1269528 1270892 . - . ID=gene-LPH39_RS05170;Name=LPH39_RS05170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05170;old_locus_tag=LPH39_05170 NZ_CP087677.1 Protein Homology CDS 1269528 1270892 . - 0 ID=cds-WP_038269799.1;Parent=gene-LPH39_RS05170;Dbxref=Genbank:WP_038269799.1;Name=WP_038269799.1;Ontology_term=GO:0003755;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851732.1;locus_tag=LPH39_RS05170;product=peptidylprolyl isomerase;protein_id=WP_038269799.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1270889 1273267 . - . ID=gene-LPH39_RS05175;Name=lptD;gbkey=Gene;gene=lptD;gene_biotype=protein_coding;locus_tag=LPH39_RS05175;old_locus_tag=LPH39_05175 NZ_CP087677.1 Protein Homology CDS 1270889 1273267 . - 0 ID=cds-WP_038269796.1;Parent=gene-LPH39_RS05175;Dbxref=Genbank:WP_038269796.1;Name=WP_038269796.1;gbkey=CDS;gene=lptD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084427.1;locus_tag=LPH39_RS05175;product=LPS-assembly protein LptD;protein_id=WP_038269796.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1274412 1274582 . + . ID=gene-LPH39_RS05180;Name=LPH39_RS05180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05180;old_locus_tag=LPH39_05180 NZ_CP087677.1 GeneMarkS-2+ CDS 1274412 1274582 . + 0 ID=cds-WP_160165108.1;Parent=gene-LPH39_RS05180;Dbxref=Genbank:WP_160165108.1;Name=WP_160165108.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05180;product=hypothetical protein;protein_id=WP_160165108.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1274644 1275852 . + . ID=gene-LPH39_RS05185;Name=ubiH;gbkey=Gene;gene=ubiH;gene_biotype=protein_coding;gene_synonym=visB;locus_tag=LPH39_RS05185;old_locus_tag=LPH39_05185 NZ_CP087677.1 Protein Homology CDS 1274644 1275852 . + 0 ID=cds-WP_038269792.1;Parent=gene-LPH39_RS05185;Dbxref=Genbank:WP_038269792.1;Name=WP_038269792.1;Ontology_term=GO:0006744,GO:0008681,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiH;go_function=2-octaprenyl-6-methoxyphenol hydroxylase activity|0008681||IEA,oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084429.1;locus_tag=LPH39_RS05185;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_038269792.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1275849 1277030 . + . ID=gene-LPH39_RS05190;Name=LPH39_RS05190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05190;old_locus_tag=LPH39_05190 NZ_CP087677.1 Protein Homology CDS 1275849 1277030 . + 0 ID=cds-WP_038269789.1;Parent=gene-LPH39_RS05190;Dbxref=Genbank:WP_038269789.1;Name=WP_038269789.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088154.1;locus_tag=LPH39_RS05190;product=UbiH/UbiF family hydroxylase;protein_id=WP_038269789.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1277214 1277981 . - . ID=gene-LPH39_RS05195;Name=LPH39_RS05195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05195;old_locus_tag=LPH39_05195 NZ_CP087677.1 Protein Homology CDS 1277214 1277981 . - 0 ID=cds-WP_230428258.1;Parent=gene-LPH39_RS05195;Dbxref=Genbank:WP_230428258.1;Name=WP_230428258.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018431.2;locus_tag=LPH39_RS05195;product=AraC family transcriptional regulator;protein_id=WP_230428258.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1278314 1278916 . + . ID=gene-LPH39_RS05200;Name=LPH39_RS05200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05200;old_locus_tag=LPH39_05200 NZ_CP087677.1 Protein Homology CDS 1278314 1278916 . + 0 ID=cds-WP_038269784.1;Parent=gene-LPH39_RS05200;Dbxref=Genbank:WP_038269784.1;Name=WP_038269784.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014573.2;locus_tag=LPH39_RS05200;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_038269784.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1278948 1279100 . + . ID=gene-LPH39_RS05205;Name=LPH39_RS05205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05205;old_locus_tag=LPH39_05205 NZ_CP087677.1 GeneMarkS-2+ CDS 1278948 1279100 . + 0 ID=cds-WP_160165107.1;Parent=gene-LPH39_RS05205;Dbxref=Genbank:WP_160165107.1;Name=WP_160165107.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05205;product=hypothetical protein;protein_id=WP_160165107.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1279312 1280289 . - . ID=gene-LPH39_RS05210;Name=LPH39_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05210;old_locus_tag=LPH39_05210 NZ_CP087677.1 Protein Homology CDS 1279312 1280289 . - 0 ID=cds-WP_038269781.1;Parent=gene-LPH39_RS05210;Dbxref=Genbank:WP_038269781.1;Name=WP_038269781.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477207.1;locus_tag=LPH39_RS05210;product=LysR family transcriptional regulator;protein_id=WP_038269781.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1280441 1281871 . + . ID=gene-LPH39_RS05215;Name=cysG;gbkey=Gene;gene=cysG;gene_biotype=protein_coding;locus_tag=LPH39_RS05215;old_locus_tag=LPH39_05215 NZ_CP087677.1 Protein Homology CDS 1280441 1281871 . + 0 ID=cds-WP_038269779.1;Parent=gene-LPH39_RS05215;Dbxref=Genbank:WP_038269779.1;Name=WP_038269779.1;Ontology_term=GO:0019354,GO:0004851,GO:0043115,GO:0051266,GO:0051287;gbkey=CDS;gene=cysG;go_function=uroporphyrin-III C-methyltransferase activity|0004851||IEA,precorrin-2 dehydrogenase activity|0043115||IEA,sirohydrochlorin ferrochelatase activity|0051266||IEA,NAD binding|0051287||IEA;go_process=siroheme biosynthetic process|0019354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851739.1;locus_tag=LPH39_RS05215;product=siroheme synthase CysG;protein_id=WP_038269779.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1281931 1282890 . + . ID=gene-LPH39_RS05220;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;locus_tag=LPH39_RS05220;old_locus_tag=LPH39_05220 NZ_CP087677.1 Protein Homology CDS 1281931 1282890 . + 0 ID=cds-WP_038269776.1;Parent=gene-LPH39_RS05220;Dbxref=Genbank:WP_038269776.1;Name=WP_038269776.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysK;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851740.1;locus_tag=LPH39_RS05220;product=cysteine synthase A;protein_id=WP_038269776.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1283004 1283324 . - . ID=gene-LPH39_RS05225;Name=LPH39_RS05225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05225;old_locus_tag=LPH39_05225 NZ_CP087677.1 GeneMarkS-2+ CDS 1283004 1283324 . - 0 ID=cds-WP_038269774.1;Parent=gene-LPH39_RS05225;Dbxref=Genbank:WP_038269774.1;Name=WP_038269774.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05225;product=hypothetical protein;protein_id=WP_038269774.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1284316 1285320 . - . ID=gene-LPH39_RS05230;Name=LPH39_RS05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05230;old_locus_tag=LPH39_05230 NZ_CP087677.1 Protein Homology CDS 1284316 1285320 . - 0 ID=cds-WP_038269772.1;Parent=gene-LPH39_RS05230;Dbxref=Genbank:WP_038269772.1;Name=WP_038269772.1;Ontology_term=GO:0006096,GO:0004332;gbkey=CDS;go_function=fructose-bisphosphate aldolase activity|0004332||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437525.1;locus_tag=LPH39_RS05230;product=fructose-bisphosphate aldolase class I;protein_id=WP_038269772.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1285423 1285752 . - . ID=gene-LPH39_RS05235;Name=LPH39_RS05235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05235;old_locus_tag=LPH39_05235 NZ_CP087677.1 GeneMarkS-2+ CDS 1285423 1285752 . - 0 ID=cds-WP_038269769.1;Parent=gene-LPH39_RS05235;Dbxref=Genbank:WP_038269769.1;Name=WP_038269769.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05235;product=hypothetical protein;protein_id=WP_038269769.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1285754 1285909 . - . ID=gene-LPH39_RS05240;Name=LPH39_RS05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05240;old_locus_tag=LPH39_05240 NZ_CP087677.1 GeneMarkS-2+ CDS 1285754 1285909 . - 0 ID=cds-WP_160199314.1;Parent=gene-LPH39_RS05240;Dbxref=Genbank:WP_160199314.1;Name=WP_160199314.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05240;product=hypothetical protein;protein_id=WP_160199314.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1286093 1287559 . - . ID=gene-LPH39_RS05245;Name=pyk;gbkey=Gene;gene=pyk;gene_biotype=protein_coding;locus_tag=LPH39_RS05245;old_locus_tag=LPH39_05245 NZ_CP087677.1 Protein Homology CDS 1286093 1287559 . - 0 ID=cds-WP_038269766.1;Parent=gene-LPH39_RS05245;Dbxref=Genbank:WP_038269766.1;Name=WP_038269766.1;Ontology_term=GO:0006096,GO:0004743,GO:0005737;gbkey=CDS;gene=pyk;go_component=cytoplasm|0005737||IEA;go_function=pyruvate kinase activity|0004743||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487265.1;locus_tag=LPH39_RS05245;product=pyruvate kinase;protein_id=WP_038269766.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1288278 1289453 . - . ID=gene-LPH39_RS05250;Name=LPH39_RS05250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05250;old_locus_tag=LPH39_05250 NZ_CP087677.1 Protein Homology CDS 1288278 1289453 . - 0 ID=cds-WP_038269917.1;Parent=gene-LPH39_RS05250;Dbxref=Genbank:WP_038269917.1;Name=WP_038269917.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445624.1;locus_tag=LPH39_RS05250;product=phosphoglycerate kinase;protein_id=WP_038269917.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1290169 1290342 . - . ID=gene-LPH39_RS05255;Name=LPH39_RS05255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05255;old_locus_tag=LPH39_05255 NZ_CP087677.1 GeneMarkS-2+ CDS 1290169 1290342 . - 0 ID=cds-WP_160165105.1;Parent=gene-LPH39_RS05255;Dbxref=Genbank:WP_160165105.1;Name=WP_160165105.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05255;product=hypothetical protein;protein_id=WP_160165105.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1290812 1291132 . + . ID=gene-LPH39_RS05260;Name=LPH39_RS05260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05260;old_locus_tag=LPH39_05260 NZ_CP087677.1 GeneMarkS-2+ CDS 1290812 1291132 . + 0 ID=cds-WP_038269764.1;Parent=gene-LPH39_RS05260;Dbxref=Genbank:WP_038269764.1;Name=WP_038269764.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05260;product=hypothetical protein;protein_id=WP_038269764.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1291414 1292817 . + . ID=gene-LPH39_RS05265;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=LPH39_RS05265;old_locus_tag=LPH39_05265 NZ_CP087677.1 Protein Homology CDS 1291414 1292817 . + 0 ID=cds-WP_038269762.1;Parent=gene-LPH39_RS05265;Dbxref=Genbank:WP_038269762.1;Name=WP_038269762.1;Ontology_term=GO:0006424,GO:0004818,GO:0009332;gbkey=CDS;gene=gltX;go_component=glutamate-tRNA ligase complex|0009332||IEA;go_function=glutamate-tRNA ligase activity|0004818||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237481.1;locus_tag=LPH39_RS05265;product=glutamate--tRNA ligase;protein_id=WP_038269762.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1292835 1293344 . + . ID=gene-LPH39_RS05270;Name=LPH39_RS05270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05270;old_locus_tag=LPH39_05270 NZ_CP087677.1 Protein Homology CDS 1292835 1293344 . + 0 ID=cds-WP_038269759.1;Parent=gene-LPH39_RS05270;Dbxref=Genbank:WP_038269759.1;Name=WP_038269759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084453.1;locus_tag=LPH39_RS05270;product=Fur family transcriptional regulator;protein_id=WP_038269759.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1293569 1293814 . + . ID=gene-LPH39_RS05275;Name=LPH39_RS05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05275;old_locus_tag=LPH39_05275 NZ_CP087677.1 GeneMarkS-2+ CDS 1293569 1293814 . + 0 ID=cds-WP_152536557.1;Parent=gene-LPH39_RS05275;Dbxref=Genbank:WP_152536557.1;Name=WP_152536557.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05275;product=hypothetical protein;protein_id=WP_152536557.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1294097 1295755 . - . ID=gene-LPH39_RS05280;Name=LPH39_RS05280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05280;old_locus_tag=LPH39_05280 NZ_CP087677.1 Protein Homology CDS 1294097 1295755 . - 0 ID=cds-WP_038269755.1;Parent=gene-LPH39_RS05280;Dbxref=Genbank:WP_038269755.1;Name=WP_038269755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088130.1;locus_tag=LPH39_RS05280;product=M28 family metallopeptidase;protein_id=WP_038269755.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1295861 1297363 . + . ID=gene-LPH39_RS05285;Name=LPH39_RS05285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05285;old_locus_tag=LPH39_05285 NZ_CP087677.1 Protein Homology CDS 1295861 1297363 . + 0 ID=cds-WP_230439356.1;Parent=gene-LPH39_RS05285;Dbxref=Genbank:WP_230439356.1;Name=WP_230439356.1;Ontology_term=GO:0071704,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=organic substance metabolic process|0071704||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084457.1;locus_tag=LPH39_RS05285;product=glycoside hydrolase family 5 protein;protein_id=WP_230439356.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1297405 1297569 . - . ID=gene-LPH39_RS05290;Name=LPH39_RS05290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05290;old_locus_tag=LPH39_05290 NZ_CP087677.1 GeneMarkS-2+ CDS 1297405 1297569 . - 0 ID=cds-WP_160165104.1;Parent=gene-LPH39_RS05290;Dbxref=Genbank:WP_160165104.1;Name=WP_160165104.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05290;product=hypothetical protein;protein_id=WP_160165104.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1297869 1300736 . + . ID=gene-LPH39_RS05295;Name=LPH39_RS05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05295;old_locus_tag=LPH39_05295 NZ_CP087677.1 Protein Homology CDS 1297869 1300736 . + 0 ID=cds-WP_038269753.1;Parent=gene-LPH39_RS05295;Dbxref=Genbank:WP_038269753.1;Name=WP_038269753.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090532.1;locus_tag=LPH39_RS05295;product=pitrilysin family protein;protein_id=WP_038269753.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1302012 1302692 . - . ID=gene-LPH39_RS05300;Name=LPH39_RS05300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05300;old_locus_tag=LPH39_05300 NZ_CP087677.1 Protein Homology CDS 1302012 1302692 . - 0 ID=cds-WP_230428263.1;Parent=gene-LPH39_RS05300;Dbxref=Genbank:WP_230428263.1;Name=WP_230428263.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098281.1;locus_tag=LPH39_RS05300;product=DUF2076 domain-containing protein;protein_id=WP_230428263.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1303004 1303852 . + . ID=gene-LPH39_RS05305;Name=LPH39_RS05305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05305;old_locus_tag=LPH39_05305 NZ_CP087677.1 Protein Homology CDS 1303004 1303852 . + 0 ID=cds-WP_081755384.1;Parent=gene-LPH39_RS05305;Dbxref=Genbank:WP_081755384.1;Name=WP_081755384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338088.1;locus_tag=LPH39_RS05305;product=SAM-dependent methyltransferase;protein_id=WP_081755384.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1304688 1305290 . - . ID=gene-LPH39_RS12005;Name=LPH39_RS12005;end_range=1305290,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS12005;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1304688 1305290 . - 0 ID=cds-LPH39_RS12005;Parent=gene-LPH39_RS12005;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0030248;end_range=1305290,.;gbkey=CDS;go_function=cellulose binding|0030248||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003231419.1;locus_tag=LPH39_RS12005;partial=true;product=expansin EXLX1 family cellulose-binding protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1305861 1306304 . - . ID=gene-LPH39_RS12010;Name=LPH39_RS12010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS12010;partial=true;pseudo=true;start_range=.,1305861 NZ_CP087677.1 Protein Homology CDS 1305861 1306304 . - 0 ID=cds-LPH39_RS12010;Parent=gene-LPH39_RS12010;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0071704,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=organic substance metabolic process|0071704||IEA;inference=COORDINATES: protein motif:HMM:NF012377.2;locus_tag=LPH39_RS12010;partial=true;product=cellulase family glycosylhydrolase;pseudo=true;start_range=.,1305861;transl_table=11 NZ_CP087677.1 RefSeq gene 1307307 1310051 . - . ID=gene-LPH39_RS05315;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=LPH39_RS05315;old_locus_tag=LPH39_05315 NZ_CP087677.1 Protein Homology CDS 1307307 1310051 . - 0 ID=cds-WP_038269738.1;Parent=gene-LPH39_RS05315;Dbxref=Genbank:WP_038269738.1;Name=WP_038269738.1;Ontology_term=GO:0006605,GO:0006886,GO:0017038,GO:0005524;gbkey=CDS;gene=secA;go_function=ATP binding|0005524||IEA;go_process=protein targeting|0006605||IEA,intracellular protein transport|0006886||IEA,protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112773.1;locus_tag=LPH39_RS05315;product=preprotein translocase subunit SecA;protein_id=WP_038269738.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1310211 1311155 . - . ID=gene-LPH39_RS05320;Name=LPH39_RS05320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05320;old_locus_tag=LPH39_05320 NZ_CP087677.1 Protein Homology CDS 1310211 1311155 . - 0 ID=cds-WP_038269737.1;Parent=gene-LPH39_RS05320;Dbxref=Genbank:WP_038269737.1;Name=WP_038269737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158828.1;locus_tag=LPH39_RS05320;product=M23 family metallopeptidase;protein_id=WP_038269737.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1311167 1311613 . + . ID=gene-LPH39_RS05325;Name=LPH39_RS05325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05325;old_locus_tag=LPH39_05325 NZ_CP087677.1 Protein Homology CDS 1311167 1311613 . + 0 ID=cds-WP_038269735.1;Parent=gene-LPH39_RS05325;Dbxref=Genbank:WP_038269735.1;Name=WP_038269735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090517.1;locus_tag=LPH39_RS05325;product=DUF721 domain-containing protein;protein_id=WP_038269735.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1311765 1312679 . - . ID=gene-LPH39_RS05330;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=LPH39_RS05330;old_locus_tag=LPH39_05330 NZ_CP087677.1 Protein Homology CDS 1311765 1312679 . - 0 ID=cds-WP_038269734.1;Parent=gene-LPH39_RS05330;Dbxref=Genbank:WP_038269734.1;Name=WP_038269734.1;Ontology_term=GO:0009245,GO:0008759;gbkey=CDS;gene=lpxC;go_function=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|0008759||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893324.1;locus_tag=LPH39_RS05330;product=UDP-3-O-acyl-N-acetylglucosamine deacetylase;protein_id=WP_038269734.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1313038 1314267 . - . ID=gene-LPH39_RS05335;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;locus_tag=LPH39_RS05335;old_locus_tag=LPH39_05335 NZ_CP087677.1 Protein Homology CDS 1313038 1314267 . - 0 ID=cds-WP_038269912.1;Parent=gene-LPH39_RS05335;Dbxref=Genbank:WP_038269912.1;Name=WP_038269912.1;Ontology_term=GO:0000910,GO:0003924;gbkey=CDS;gene=ftsZ;go_function=GTPase activity|0003924||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017170527.1;locus_tag=LPH39_RS05335;product=cell division protein FtsZ;protein_id=WP_038269912.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1314440 1315675 . - . ID=gene-LPH39_RS05340;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=LPH39_RS05340;old_locus_tag=LPH39_05340 NZ_CP087677.1 Protein Homology CDS 1314440 1315675 . - 0 ID=cds-WP_038269733.1;Parent=gene-LPH39_RS05340;Dbxref=Genbank:WP_038269733.1;Name=WP_038269733.1;Ontology_term=GO:0043093,GO:0005515,GO:0005524;gbkey=CDS;gene=ftsA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA;go_process=FtsZ-dependent cytokinesis|0043093||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019398559.1;locus_tag=LPH39_RS05340;product=cell division protein FtsA;protein_id=WP_038269733.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1315672 1316508 . - . ID=gene-LPH39_RS05345;Name=LPH39_RS05345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05345;old_locus_tag=LPH39_05345 NZ_CP087677.1 Protein Homology CDS 1315672 1316508 . - 0 ID=cds-WP_038269909.1;Parent=gene-LPH39_RS05345;Dbxref=Genbank:WP_038269909.1;Name=WP_038269909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338090.1;locus_tag=LPH39_RS05345;product=cell division protein FtsQ/DivIB;protein_id=WP_038269909.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1316615 1317571 . - . ID=gene-LPH39_RS05350;Name=LPH39_RS05350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05350;old_locus_tag=LPH39_05350 NZ_CP087677.1 Protein Homology CDS 1316615 1317571 . - 0 ID=cds-WP_038269731.1;Parent=gene-LPH39_RS05350;Dbxref=Genbank:WP_038269731.1;Name=WP_038269731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851207.1;locus_tag=LPH39_RS05350;product=D-alanine--D-alanine ligase;protein_id=WP_038269731.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1317568 1319001 . - . ID=gene-LPH39_RS05355;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=LPH39_RS05355;old_locus_tag=LPH39_05355 NZ_CP087677.1 Protein Homology CDS 1317568 1319001 . - 0 ID=cds-WP_038269729.1;Parent=gene-LPH39_RS05355;Dbxref=Genbank:WP_038269729.1;Name=WP_038269729.1;Ontology_term=GO:0009252,GO:0008763;gbkey=CDS;gene=murC;go_function=UDP-N-acetylmuramate-L-alanine ligase activity|0008763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851208.1;locus_tag=LPH39_RS05355;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_038269729.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1319057 1320151 . - . ID=gene-LPH39_RS05360;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=LPH39_RS05360;old_locus_tag=LPH39_05360 NZ_CP087677.1 Protein Homology CDS 1319057 1320151 . - 0 ID=cds-WP_038269727.1;Parent=gene-LPH39_RS05360;Dbxref=Genbank:WP_038269727.1;Name=WP_038269727.1;Ontology_term=GO:0009252,GO:0050511;gbkey=CDS;gene=murG;go_function=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity|0050511||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084474.1;locus_tag=LPH39_RS05360;product=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase;protein_id=WP_038269727.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1320142 1321416 . - . ID=gene-LPH39_RS05365;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;locus_tag=LPH39_RS05365;old_locus_tag=LPH39_05365 NZ_CP087677.1 Protein Homology CDS 1320142 1321416 . - 0 ID=cds-WP_038269725.1;Parent=gene-LPH39_RS05365;Dbxref=Genbank:WP_038269725.1;Name=WP_038269725.1;Ontology_term=GO:0009252,GO:0051301,GO:0003674,GO:0016020;gbkey=CDS;gene=ftsW;go_component=membrane|0016020||IEA;go_function=molecular_function|0003674||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851210.1;locus_tag=LPH39_RS05365;product=putative lipid II flippase FtsW;protein_id=WP_038269725.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1321416 1322501 . - . ID=gene-LPH39_RS05370;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=LPH39_RS05370;old_locus_tag=LPH39_05370 NZ_CP087677.1 Protein Homology CDS 1321416 1322501 . - 0 ID=cds-WP_038269906.1;Parent=gene-LPH39_RS05370;Dbxref=Genbank:WP_038269906.1;Name=WP_038269906.1;Ontology_term=GO:0009252,GO:0008963;gbkey=CDS;gene=mraY;go_function=phospho-N-acetylmuramoyl-pentapeptide-transferase activity|0008963||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452808.1;locus_tag=LPH39_RS05370;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=WP_038269906.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1322491 1323897 . - . ID=gene-LPH39_RS05375;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=LPH39_RS05375;old_locus_tag=LPH39_05375 NZ_CP087677.1 Protein Homology CDS 1322491 1323897 . - 0 ID=cds-WP_038269723.1;Parent=gene-LPH39_RS05375;Dbxref=Genbank:WP_038269723.1;Name=WP_038269723.1;Ontology_term=GO:0009252,GO:0047480;gbkey=CDS;gene=murF;go_function=UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485287.1;locus_tag=LPH39_RS05375;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_038269723.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1323897 1325369 . - . ID=gene-LPH39_RS05380;Name=LPH39_RS05380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05380;old_locus_tag=LPH39_05380 NZ_CP087677.1 Protein Homology CDS 1323897 1325369 . - 0 ID=cds-WP_038269721.1;Parent=gene-LPH39_RS05380;Dbxref=Genbank:WP_038269721.1;Name=WP_038269721.1;Ontology_term=GO:0008360,GO:0009058,GO:0051301,GO:0005524,GO:0016881;gbkey=CDS;go_function=ATP binding|0005524||IEA,acid-amino acid ligase activity|0016881||IEA;go_process=regulation of cell shape|0008360||IEA,biosynthetic process|0009058||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084483.1;locus_tag=LPH39_RS05380;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=WP_038269721.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1325378 1327219 . - . ID=gene-LPH39_RS05385;Name=LPH39_RS05385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05385;old_locus_tag=LPH39_05385 NZ_CP087677.1 Protein Homology CDS 1325378 1327219 . - 0 ID=cds-WP_038269719.1;Parent=gene-LPH39_RS05385;Dbxref=Genbank:WP_038269719.1;Name=WP_038269719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098289.1;locus_tag=LPH39_RS05385;product=penicillin-binding protein 2;protein_id=WP_038269719.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1327216 1327479 . - . ID=gene-LPH39_RS05390;Name=ftsL;gbkey=Gene;gene=ftsL;gene_biotype=protein_coding;locus_tag=LPH39_RS05390;old_locus_tag=LPH39_05390 NZ_CP087677.1 Protein Homology CDS 1327216 1327479 . - 0 ID=cds-WP_038269717.1;Parent=gene-LPH39_RS05390;Dbxref=Genbank:WP_038269717.1;Name=WP_038269717.1;Ontology_term=GO:0000910,GO:0016020;gbkey=CDS;gene=ftsL;go_component=membrane|0016020||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010344441.1;locus_tag=LPH39_RS05390;product=cell division protein FtsL;protein_id=WP_038269717.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1327476 1328462 . - . ID=gene-LPH39_RS05395;Name=rsmH;gbkey=Gene;gene=rsmH;gene_biotype=protein_coding;locus_tag=LPH39_RS05395;old_locus_tag=LPH39_05395 NZ_CP087677.1 Protein Homology CDS 1327476 1328462 . - 0 ID=cds-WP_038269715.1;Parent=gene-LPH39_RS05395;Dbxref=Genbank:WP_038269715.1;Name=WP_038269715.1;Ontology_term=GO:0016434;gbkey=CDS;gene=rsmH;go_function=rRNA (cytosine) methyltransferase activity|0016434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382751.1;locus_tag=LPH39_RS05395;product=16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH;protein_id=WP_038269715.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1328473 1328928 . - . ID=gene-LPH39_RS05400;Name=LPH39_RS05400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05400;old_locus_tag=LPH39_05400 NZ_CP087677.1 Protein Homology CDS 1328473 1328928 . - 0 ID=cds-WP_114867229.1;Parent=gene-LPH39_RS05400;Dbxref=Genbank:WP_114867229.1;Name=WP_114867229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367651.1;locus_tag=LPH39_RS05400;product=division/cell wall cluster transcriptional repressor MraZ;protein_id=WP_114867229.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1330990 1332852 . - . ID=gene-LPH39_RS05405;Name=LPH39_RS05405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05405;old_locus_tag=LPH39_05405 NZ_CP087677.1 Protein Homology CDS 1330990 1332852 . - 0 ID=cds-WP_038269710.1;Parent=gene-LPH39_RS05405;Dbxref=Genbank:WP_038269710.1;Name=WP_038269710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084493.1;locus_tag=LPH39_RS05405;product=SLC13 family permease;protein_id=WP_038269710.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1332883 1333617 . - . ID=gene-LPH39_RS05410;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;locus_tag=LPH39_RS05410;old_locus_tag=LPH39_05410 NZ_CP087677.1 Protein Homology CDS 1332883 1333617 . - 0 ID=cds-WP_038269708.1;Parent=gene-LPH39_RS05410;Dbxref=Genbank:WP_038269708.1;Name=WP_038269708.1;Ontology_term=GO:0006400,GO:0008176;gbkey=CDS;gene=trmB;go_function=tRNA (guanine-N7-)-methyltransferase activity|0008176||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893307.1;locus_tag=LPH39_RS05410;product=tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=WP_038269708.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1333614 1334408 . - . ID=gene-LPH39_RS05415;Name=LPH39_RS05415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05415;old_locus_tag=LPH39_05415 NZ_CP087677.1 Protein Homology CDS 1333614 1334408 . - 0 ID=cds-WP_038269905.1;Parent=gene-LPH39_RS05415;Dbxref=Genbank:WP_038269905.1;Name=WP_038269905.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031337090.1;locus_tag=LPH39_RS05415;product=thiazole synthase;protein_id=WP_038269905.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1334457 1334657 . - . ID=gene-LPH39_RS05420;Name=thiS;gbkey=Gene;gene=thiS;gene_biotype=protein_coding;locus_tag=LPH39_RS05420;old_locus_tag=LPH39_05420 NZ_CP087677.1 Protein Homology CDS 1334457 1334657 . - 0 ID=cds-WP_038269706.1;Parent=gene-LPH39_RS05420;Dbxref=Genbank:WP_038269706.1;Name=WP_038269706.1;Ontology_term=GO:0009228,GO:0003824;gbkey=CDS;gene=thiS;go_function=catalytic activity|0003824||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944633.1;locus_tag=LPH39_RS05420;product=sulfur carrier protein ThiS;protein_id=WP_038269706.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1334854 1336626 . + . ID=gene-LPH39_RS05425;Name=LPH39_RS05425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05425;old_locus_tag=LPH39_05425 NZ_CP087677.1 Protein Homology CDS 1334854 1336626 . + 0 ID=cds-WP_171898096.1;Parent=gene-LPH39_RS05425;Dbxref=Genbank:WP_171898096.1;Name=WP_171898096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914545.1;locus_tag=LPH39_RS05425;product=autotransporter domain-containing protein;protein_id=WP_171898096.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1336730 1336803 . + . ID=gene-LPH39_RS05430;Name=LPH39_RS05430;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS05430;old_locus_tag=LPH39_05430 NZ_CP087677.1 tRNAscan-SE tRNA 1336730 1336803 . + . ID=rna-LPH39_RS05430;Parent=gene-LPH39_RS05430;anticodon=(pos:1336762..1336764);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05430;product=tRNA-Gly NZ_CP087677.1 tRNAscan-SE exon 1336730 1336803 . + . ID=exon-LPH39_RS05430-1;Parent=rna-LPH39_RS05430;anticodon=(pos:1336762..1336764);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05430;product=tRNA-Gly NZ_CP087677.1 RefSeq gene 1336981 1337406 . - . ID=gene-LPH39_RS05435;Name=LPH39_RS05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05435;old_locus_tag=LPH39_05435 NZ_CP087677.1 Protein Homology CDS 1336981 1337406 . - 0 ID=cds-WP_038269904.1;Parent=gene-LPH39_RS05435;Dbxref=Genbank:WP_038269904.1;Name=WP_038269904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571165.1;locus_tag=LPH39_RS05435;product=phosphotransferase;protein_id=WP_038269904.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1337393 1339759 . - . ID=gene-LPH39_RS05440;Name=LPH39_RS05440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05440;old_locus_tag=LPH39_05440 NZ_CP087677.1 Protein Homology CDS 1337393 1339759 . - 0 ID=cds-WP_038269903.1;Parent=gene-LPH39_RS05440;Dbxref=Genbank:WP_038269903.1;Name=WP_038269903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084505.1;locus_tag=LPH39_RS05440;product=MMPL family transporter;protein_id=WP_038269903.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1339943 1340587 . - . ID=gene-LPH39_RS05445;Name=LPH39_RS05445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05445;old_locus_tag=LPH39_05445 NZ_CP087677.1 Protein Homology CDS 1339943 1340587 . - 0 ID=cds-WP_081755386.1;Parent=gene-LPH39_RS05445;Dbxref=Genbank:WP_081755386.1;Name=WP_081755386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084509.1;locus_tag=LPH39_RS05445;product=fatty acyl CoA synthetase;protein_id=WP_081755386.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1340514 1341494 . - . ID=gene-LPH39_RS05450;Name=LPH39_RS05450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05450;old_locus_tag=LPH39_05450 NZ_CP087677.1 Protein Homology CDS 1340514 1341494 . - 0 ID=cds-WP_038269702.1;Parent=gene-LPH39_RS05450;Dbxref=Genbank:WP_038269702.1;Name=WP_038269702.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084511.1;locus_tag=LPH39_RS05450;product=acyltransferase;protein_id=WP_038269702.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1341491 1341778 . - . ID=gene-LPH39_RS05455;Name=LPH39_RS05455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05455;old_locus_tag=LPH39_05455 NZ_CP087677.1 Protein Homology CDS 1341491 1341778 . - 0 ID=cds-WP_038269700.1;Parent=gene-LPH39_RS05455;Dbxref=Genbank:WP_038269700.1;Name=WP_038269700.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090455.1;locus_tag=LPH39_RS05455;product=beta-hydroxyacyl-ACP dehydratase;protein_id=WP_038269700.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1341988 1342624 . - . ID=gene-LPH39_RS05460;Name=LPH39_RS05460;end_range=1342624,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS05460;old_locus_tag=LPH39_05460;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1341988 1342624 . - 1 ID=cds-LPH39_RS05460;Parent=gene-LPH39_RS05460;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1342624,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010342703.1;locus_tag=LPH39_RS05460;partial=true;product=ketosynthase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1342695 1342964 . - . ID=gene-LPH39_RS05465;Name=LPH39_RS05465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05465;old_locus_tag=LPH39_05465 NZ_CP087677.1 Protein Homology CDS 1342695 1342964 . - 0 ID=cds-WP_038269698.1;Parent=gene-LPH39_RS05465;Dbxref=Genbank:WP_038269698.1;Name=WP_038269698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039083.1;locus_tag=LPH39_RS05465;product=phosphopantetheine-binding protein;protein_id=WP_038269698.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1343141 1343379 . + . ID=gene-LPH39_RS05470;Name=LPH39_RS05470;end_range=1343379,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS05470;old_locus_tag=LPH39_05470;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1343141 1343379 . + 0 ID=cds-LPH39_RS05470;Parent=gene-LPH39_RS05470;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0071949;end_range=1343379,.;gbkey=CDS;go_function=FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003476649.1;locus_tag=LPH39_RS05470;partial=true;product=FAD-dependent monooxygenase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1343586 1344506 . + . ID=gene-LPH39_RS05475;Name=LPH39_RS05475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05475;old_locus_tag=LPH39_05475 NZ_CP087677.1 Protein Homology CDS 1343586 1344506 . + 0 ID=cds-WP_114867230.1;Parent=gene-LPH39_RS05475;Dbxref=Genbank:WP_114867230.1;Name=WP_114867230.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487396.1;locus_tag=LPH39_RS05475;product=pteridine-dependent deoxygenase;protein_id=WP_114867230.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1344810 1345385 . + . ID=gene-LPH39_RS05480;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=LPH39_RS05480;old_locus_tag=LPH39_05480 NZ_CP087677.1 Protein Homology CDS 1344810 1345385 . + 0 ID=cds-WP_038269697.1;Parent=gene-LPH39_RS05480;Dbxref=Genbank:WP_038269697.1;Name=WP_038269697.1;Ontology_term=GO:0009394,GO:0008829;gbkey=CDS;gene=dcd;go_function=dCTP deaminase activity|0008829||IEA;go_process=2'-deoxyribonucleotide metabolic process|0009394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912996.1;locus_tag=LPH39_RS05480;product=dCTP deaminase;protein_id=WP_038269697.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1345898 1346851 . - . ID=gene-LPH39_RS05485;Name=LPH39_RS05485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05485;old_locus_tag=LPH39_05485 NZ_CP087677.1 Protein Homology CDS 1345898 1346851 . - 0 ID=cds-WP_038269695.1;Parent=gene-LPH39_RS05485;Dbxref=Genbank:WP_038269695.1;Name=WP_038269695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852470.1;locus_tag=LPH39_RS05485;product=DUF1684 domain-containing protein;protein_id=WP_038269695.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1346851 1348722 . - . ID=gene-LPH39_RS05490;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=LPH39_RS05490;old_locus_tag=LPH39_05490 NZ_CP087677.1 Protein Homology CDS 1346851 1348722 . - 0 ID=cds-WP_038269692.1;Parent=gene-LPH39_RS05490;Dbxref=Genbank:WP_038269692.1;Name=WP_038269692.1;Ontology_term=GO:0006298,GO:0005524,GO:0016887,GO:0030983,GO:0032300;gbkey=CDS;gene=mutL;go_component=mismatch repair complex|0032300||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037442.1;locus_tag=LPH39_RS05490;product=DNA mismatch repair endonuclease MutL;protein_id=WP_038269692.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1348861 1350480 . - . ID=gene-LPH39_RS05495;Name=LPH39_RS05495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05495;old_locus_tag=LPH39_05495 NZ_CP087677.1 Protein Homology CDS 1348861 1350480 . - 0 ID=cds-WP_038269690.1;Parent=gene-LPH39_RS05495;Dbxref=Genbank:WP_038269690.1;Name=WP_038269690.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037443.1;locus_tag=LPH39_RS05495;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_038269690.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1350539 1351027 . - . ID=gene-LPH39_RS05500;Name=tsaE;gbkey=Gene;gene=tsaE;gene_biotype=protein_coding;locus_tag=LPH39_RS05500;old_locus_tag=LPH39_05500 NZ_CP087677.1 Protein Homology CDS 1350539 1351027 . - 0 ID=cds-WP_038269688.1;Parent=gene-LPH39_RS05500;Dbxref=Genbank:WP_038269688.1;Name=WP_038269688.1;Ontology_term=GO:0006400,GO:0016887,GO:0005737;gbkey=CDS;gene=tsaE;go_component=cytoplasm|0005737||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852467.1;locus_tag=LPH39_RS05500;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;protein_id=WP_038269688.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1351024 1352514 . - . ID=gene-LPH39_RS05505;Name=LPH39_RS05505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05505;old_locus_tag=LPH39_05505 NZ_CP087677.1 Protein Homology CDS 1351024 1352514 . - 0 ID=cds-WP_038269686.1;Parent=gene-LPH39_RS05505;Dbxref=Genbank:WP_038269686.1;Name=WP_038269686.1;Ontology_term=GO:0052855;gbkey=CDS;go_function=ADP-dependent NAD(P)H-hydrate dehydratase activity|0052855||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893280.1;locus_tag=LPH39_RS05505;product=NAD(P)H-hydrate dehydratase;protein_id=WP_038269686.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1352841 1354175 . + . ID=gene-LPH39_RS05510;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=LPH39_RS05510;old_locus_tag=LPH39_05510 NZ_CP087677.1 Protein Homology CDS 1352841 1354175 . + 0 ID=cds-WP_038269685.1;Parent=gene-LPH39_RS05510;Dbxref=Genbank:WP_038269685.1;Name=WP_038269685.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;gene=xseA;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994364.1;locus_tag=LPH39_RS05510;product=exodeoxyribonuclease VII large subunit;protein_id=WP_038269685.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1354236 1355492 . - . ID=gene-LPH39_RS05515;Name=LPH39_RS05515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05515;old_locus_tag=LPH39_05515 NZ_CP087677.1 Protein Homology CDS 1354236 1355492 . - 0 ID=cds-WP_230428260.1;Parent=gene-LPH39_RS05515;Dbxref=Genbank:WP_230428260.1;Name=WP_230428260.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017835.2;locus_tag=LPH39_RS05515;product=virulence factor;protein_id=WP_230428260.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1355589 1357391 . - . ID=gene-LPH39_RS05520;Name=LPH39_RS05520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05520;old_locus_tag=LPH39_05520 NZ_CP087677.1 Protein Homology CDS 1355589 1357391 . - 0 ID=cds-WP_038269895.1;Parent=gene-LPH39_RS05520;Dbxref=Genbank:WP_038269895.1;Name=WP_038269895.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338098.1;locus_tag=LPH39_RS05520;product=formylglycine-generating enzyme family protein;protein_id=WP_038269895.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1357514 1358605 . + . ID=gene-LPH39_RS05525;Name=rnd;gbkey=Gene;gene=rnd;gene_biotype=protein_coding;locus_tag=LPH39_RS05525;old_locus_tag=LPH39_05525 NZ_CP087677.1 Protein Homology CDS 1357514 1358605 . + 0 ID=cds-WP_038269683.1;Parent=gene-LPH39_RS05525;Dbxref=Genbank:WP_038269683.1;Name=WP_038269683.1;Ontology_term=GO:0006396,GO:0016891;gbkey=CDS;gene=rnd;go_function=endoribonuclease activity%2C producing 5'-phosphomonoesters|0016891||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893274.1;locus_tag=LPH39_RS05525;product=ribonuclease D;protein_id=WP_038269683.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1358848 1359252 . + . ID=gene-LPH39_RS05530;Name=LPH39_RS05530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05530;old_locus_tag=LPH39_05530 NZ_CP087677.1 Protein Homology CDS 1358848 1359252 . + 0 ID=cds-WP_038269681.1;Parent=gene-LPH39_RS05530;Dbxref=Genbank:WP_038269681.1;Name=WP_038269681.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084562.1;locus_tag=LPH39_RS05530;product=H-NS family nucleoid-associated regulatory protein;protein_id=WP_038269681.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1360697 1361639 . - . ID=gene-LPH39_RS05535;Name=LPH39_RS05535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS05535;old_locus_tag=LPH39_05535;pseudo=true NZ_CP087677.1 Protein Homology CDS 1360697 1361639 . - 0 ID=cds-LPH39_RS05535;Parent=gene-LPH39_RS05535;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159927.1;locus_tag=LPH39_RS05535;product=23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1361649 1362209 . - . ID=gene-LPH39_RS05540;Name=LPH39_RS05540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05540;old_locus_tag=LPH39_05540 NZ_CP087677.1 Protein Homology CDS 1361649 1362209 . - 0 ID=cds-WP_038269677.1;Parent=gene-LPH39_RS05540;Dbxref=Genbank:WP_038269677.1;Name=WP_038269677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572602.1;locus_tag=LPH39_RS05540;product=nucleoside deaminase;protein_id=WP_038269677.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1362560 1362636 . - . ID=gene-LPH39_RS05545;Name=LPH39_RS05545;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS05545;old_locus_tag=LPH39_05545 NZ_CP087677.1 tRNAscan-SE tRNA 1362560 1362636 . - . ID=rna-LPH39_RS05545;Parent=gene-LPH39_RS05545;anticodon=(pos:complement(1362600..1362602));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05545;product=tRNA-Pro NZ_CP087677.1 tRNAscan-SE exon 1362560 1362636 . - . ID=exon-LPH39_RS05545-1;Parent=rna-LPH39_RS05545;anticodon=(pos:complement(1362600..1362602));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05545;product=tRNA-Pro NZ_CP087677.1 RefSeq gene 1362759 1363115 . - . ID=gene-LPH39_RS05550;Name=LPH39_RS05550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05550;old_locus_tag=LPH39_05550 NZ_CP087677.1 Protein Homology CDS 1362759 1363115 . - 0 ID=cds-WP_038269675.1;Parent=gene-LPH39_RS05550;Dbxref=Genbank:WP_038269675.1;Name=WP_038269675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019182707.1;locus_tag=LPH39_RS05550;product=MerR family transcriptional regulator;protein_id=WP_038269675.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1363096 1363395 . - . ID=gene-LPH39_RS05555;Name=LPH39_RS05555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05555;old_locus_tag=LPH39_05555 NZ_CP087677.1 Protein Homology CDS 1363096 1363395 . - 0 ID=cds-WP_038269673.1;Parent=gene-LPH39_RS05555;Dbxref=Genbank:WP_038269673.1;Name=WP_038269673.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811076.1;locus_tag=LPH39_RS05555;product=integration host factor subunit alpha;protein_id=WP_038269673.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1363419 1365797 . - . ID=gene-LPH39_RS05560;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=LPH39_RS05560;old_locus_tag=LPH39_05560 NZ_CP087677.1 Protein Homology CDS 1363419 1365797 . - 0 ID=cds-WP_038269671.1;Parent=gene-LPH39_RS05560;Dbxref=Genbank:WP_038269671.1;Name=WP_038269671.1;Ontology_term=GO:0006432,GO:0004826,GO:0009328;gbkey=CDS;gene=pheT;go_component=phenylalanine-tRNA ligase complex|0009328||IEA;go_function=phenylalanine-tRNA ligase activity|0004826||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903311.1;locus_tag=LPH39_RS05560;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_038269671.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1365889 1366884 . - . ID=gene-LPH39_RS05565;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;locus_tag=LPH39_RS05565;old_locus_tag=LPH39_05565 NZ_CP087677.1 Protein Homology CDS 1365889 1366884 . - 0 ID=cds-WP_038269669.1;Parent=gene-LPH39_RS05565;Dbxref=Genbank:WP_038269669.1;Name=WP_038269669.1;Ontology_term=GO:0006432,GO:0004826,GO:0009328;gbkey=CDS;gene=pheS;go_component=phenylalanine-tRNA ligase complex|0009328||IEA;go_function=phenylalanine-tRNA ligase activity|0004826||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299936.1;locus_tag=LPH39_RS05565;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_038269669.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1367156 1367515 . - . ID=gene-LPH39_RS05570;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=LPH39_RS05570;old_locus_tag=LPH39_05570 NZ_CP087677.1 Protein Homology CDS 1367156 1367515 . - 0 ID=cds-WP_038269666.1;Parent=gene-LPH39_RS05570;Dbxref=Genbank:WP_038269666.1;Name=WP_038269666.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0005840;gbkey=CDS;gene=rplT;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037598.1;locus_tag=LPH39_RS05570;product=50S ribosomal protein L20;protein_id=WP_038269666.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1367526 1367723 . - . ID=gene-LPH39_RS05575;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=LPH39_RS05575;old_locus_tag=LPH39_05575 NZ_CP087677.1 Protein Homology CDS 1367526 1367723 . - 0 ID=cds-WP_038269890.1;Parent=gene-LPH39_RS05575;Dbxref=Genbank:WP_038269890.1;Name=WP_038269890.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmI;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410436.1;locus_tag=LPH39_RS05575;product=50S ribosomal protein L35;protein_id=WP_038269890.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1367965 1368492 . - . ID=gene-LPH39_RS05580;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=LPH39_RS05580;old_locus_tag=LPH39_05580 NZ_CP087677.1 Protein Homology CDS 1367965 1368492 . - 0 ID=cds-WP_081755382.1;Parent=gene-LPH39_RS05580;Dbxref=Genbank:WP_081755382.1;Name=WP_081755382.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infC;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660568.1;locus_tag=LPH39_RS05580;product=translation initiation factor IF-3;protein_id=WP_081755382.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1368560 1370467 . - . ID=gene-LPH39_RS05585;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=LPH39_RS05585;old_locus_tag=LPH39_05585 NZ_CP087677.1 Protein Homology CDS 1368560 1370467 . - 0 ID=cds-WP_038269664.1;Parent=gene-LPH39_RS05585;Dbxref=Genbank:WP_038269664.1;Name=WP_038269664.1;Ontology_term=GO:0006435,GO:0004829,GO:0005737;gbkey=CDS;gene=thrS;go_component=cytoplasm|0005737||IEA;go_function=threonine-tRNA ligase activity|0004829||IEA;go_process=threonyl-tRNA aminoacylation|0006435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090399.1;locus_tag=LPH39_RS05585;product=threonine--tRNA ligase;protein_id=WP_038269664.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1371635 1371919 . + . ID=gene-LPH39_RS05590;Name=LPH39_RS05590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05590;old_locus_tag=LPH39_05590 NZ_CP087677.1 Protein Homology CDS 1371635 1371919 . + 0 ID=cds-WP_038269663.1;Parent=gene-LPH39_RS05590;Dbxref=Genbank:WP_038269663.1;Name=WP_038269663.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183923.1;locus_tag=LPH39_RS05590;product=hypothetical protein;protein_id=WP_038269663.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1374209 1375090 . + . ID=gene-LPH39_RS05595;Name=rimK;gbkey=Gene;gene=rimK;gene_biotype=protein_coding;locus_tag=LPH39_RS05595;old_locus_tag=LPH39_05595 NZ_CP087677.1 Protein Homology CDS 1374209 1375090 . + 0 ID=cds-WP_038269662.1;Parent=gene-LPH39_RS05595;Dbxref=Genbank:WP_038269662.1;Name=WP_038269662.1;Ontology_term=GO:0036211,GO:0005524,GO:0046872;gbkey=CDS;gene=rimK;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090391.1;locus_tag=LPH39_RS05595;product=30S ribosomal protein S6--L-glutamate ligase;protein_id=WP_038269662.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1375744 1376421 . + . ID=gene-LPH39_RS05600;Name=LPH39_RS05600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05600;old_locus_tag=LPH39_05600 NZ_CP087677.1 Protein Homology CDS 1375744 1376421 . + 0 ID=cds-WP_038269661.1;Parent=gene-LPH39_RS05600;Dbxref=Genbank:WP_038269661.1;Name=WP_038269661.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169438.1;locus_tag=LPH39_RS05600;product=response regulator transcription factor;protein_id=WP_038269661.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1376414 1377751 . + . ID=gene-LPH39_RS05605;Name=LPH39_RS05605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05605;old_locus_tag=LPH39_05605 NZ_CP087677.1 Protein Homology CDS 1376414 1377751 . + 0 ID=cds-WP_038269659.1;Parent=gene-LPH39_RS05605;Dbxref=Genbank:WP_038269659.1;Name=WP_038269659.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084592.1;locus_tag=LPH39_RS05605;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_038269659.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1378050 1378685 . - . ID=gene-LPH39_RS05610;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=LPH39_RS05610;old_locus_tag=LPH39_05610 NZ_CP087677.1 Protein Homology CDS 1378050 1378685 . - 0 ID=cds-WP_038269657.1;Parent=gene-LPH39_RS05610;Dbxref=Genbank:WP_038269657.1;Name=WP_038269657.1;Note=Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.;Ontology_term=GO:0015937,GO:0004140,GO:0005737;gbkey=CDS;gene=coaE;go_component=cytoplasm|0005737||IEA;go_function=dephospho-CoA kinase activity|0004140||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019398553.1;locus_tag=LPH39_RS05610;product=dephospho-CoA kinase;protein_id=WP_038269657.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1378697 1379560 . - . ID=gene-LPH39_RS05615;Name=LPH39_RS05615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05615;old_locus_tag=LPH39_05615 NZ_CP087677.1 Protein Homology CDS 1378697 1379560 . - 0 ID=cds-WP_038269655.1;Parent=gene-LPH39_RS05615;Dbxref=Genbank:WP_038269655.1;Name=WP_038269655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660173.1;locus_tag=LPH39_RS05615;product=A24 family peptidase;protein_id=WP_038269655.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1379567 1380769 . - . ID=gene-LPH39_RS05620;Name=LPH39_RS05620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05620;old_locus_tag=LPH39_05620 NZ_CP087677.1 Protein Homology CDS 1379567 1380769 . - 0 ID=cds-WP_114867231.1;Parent=gene-LPH39_RS05620;Dbxref=Genbank:WP_114867231.1;Name=WP_114867231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894959.1;locus_tag=LPH39_RS05620;product=type II secretion system F family protein;protein_id=WP_114867231.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1381210 1381665 . + . ID=gene-LPH39_RS05625;Name=LPH39_RS05625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05625;old_locus_tag=LPH39_05625 NZ_CP087677.1 Protein Homology CDS 1381210 1381665 . + 0 ID=cds-WP_038269653.1;Parent=gene-LPH39_RS05625;Dbxref=Genbank:WP_038269653.1;Name=WP_038269653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084597.1;locus_tag=LPH39_RS05625;product=pilin;protein_id=WP_038269653.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1383762 1383968 . - . ID=gene-LPH39_RS05630;Name=LPH39_RS05630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05630;old_locus_tag=LPH39_05630 NZ_CP087677.1 GeneMarkS-2+ CDS 1383762 1383968 . - 0 ID=cds-WP_152536555.1;Parent=gene-LPH39_RS05630;Dbxref=Genbank:WP_152536555.1;Name=WP_152536555.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05630;product=hypothetical protein;protein_id=WP_152536555.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1384365 1384907 . + . ID=gene-LPH39_RS05635;Name=LPH39_RS05635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05635;old_locus_tag=LPH39_05635 NZ_CP087677.1 Protein Homology CDS 1384365 1384907 . + 0 ID=cds-WP_038269649.1;Parent=gene-LPH39_RS05635;Dbxref=Genbank:WP_038269649.1;Name=WP_038269649.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337723.1;locus_tag=LPH39_RS05635;product=pilin;protein_id=WP_038269649.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1385111 1385587 . + . ID=gene-LPH39_RS05640;Name=LPH39_RS05640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05640;old_locus_tag=LPH39_05640 NZ_CP087677.1 Protein Homology CDS 1385111 1385587 . + 0 ID=cds-WP_038269647.1;Parent=gene-LPH39_RS05640;Dbxref=Genbank:WP_038269647.1;Name=WP_038269647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851240.1;locus_tag=LPH39_RS05640;product=pilin;protein_id=WP_038269647.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1386032 1386334 . + . ID=gene-LPH39_RS05645;Name=LPH39_RS05645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05645;old_locus_tag=LPH39_05645 NZ_CP087677.1 GeneMarkS-2+ CDS 1386032 1386334 . + 0 ID=cds-WP_162814113.1;Parent=gene-LPH39_RS05645;Dbxref=Genbank:WP_162814113.1;Name=WP_162814113.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05645;product=hypothetical protein;protein_id=WP_162814113.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1386450 1388183 . + . ID=gene-LPH39_RS05650;Name=pilB;gbkey=Gene;gene=pilB;gene_biotype=protein_coding;locus_tag=LPH39_RS05650;old_locus_tag=LPH39_05650 NZ_CP087677.1 Protein Homology CDS 1386450 1388183 . + 0 ID=cds-WP_038269643.1;Parent=gene-LPH39_RS05650;Dbxref=Genbank:WP_038269643.1;Name=WP_038269643.1;Ontology_term=GO:0009297,GO:0016887;gbkey=CDS;gene=pilB;go_function=ATP hydrolysis activity|0016887||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851241.1;locus_tag=LPH39_RS05650;product=type IV-A pilus assembly ATPase PilB;protein_id=WP_038269643.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1388275 1389687 . - . ID=gene-LPH39_RS05655;Name=LPH39_RS05655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05655;old_locus_tag=LPH39_05655 NZ_CP087677.1 Protein Homology CDS 1388275 1389687 . - 0 ID=cds-WP_038269641.1;Parent=gene-LPH39_RS05655;Dbxref=Genbank:WP_038269641.1;Name=WP_038269641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437607.1;locus_tag=LPH39_RS05655;product=sigma-54 dependent transcriptional regulator;protein_id=WP_038269641.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1389856 1391466 . - . ID=gene-LPH39_RS05660;Name=LPH39_RS05660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05660;old_locus_tag=LPH39_05660 NZ_CP087677.1 Protein Homology CDS 1389856 1391466 . - 0 ID=cds-WP_038269639.1;Parent=gene-LPH39_RS05660;Dbxref=Genbank:WP_038269639.1;Name=WP_038269639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348336.1;locus_tag=LPH39_RS05660;product=ATP-binding protein;protein_id=WP_038269639.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1391722 1392885 . + . ID=gene-LPH39_RS05665;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=LPH39_RS05665;old_locus_tag=LPH39_05665 NZ_CP087677.1 Protein Homology CDS 1391722 1392885 . + 0 ID=cds-WP_038269637.1;Parent=gene-LPH39_RS05665;Dbxref=Genbank:WP_038269637.1;Name=WP_038269637.1;Ontology_term=GO:0006099,GO:0003824,GO:0005524,GO:0046872;gbkey=CDS;gene=sucC;go_function=catalytic activity|0003824||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894968.1;locus_tag=LPH39_RS05665;product=ADP-forming succinate--CoA ligase subunit beta;protein_id=WP_038269637.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1392914 1393786 . + . ID=gene-LPH39_RS05670;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=LPH39_RS05670;old_locus_tag=LPH39_05670 NZ_CP087677.1 Protein Homology CDS 1392914 1393786 . + 0 ID=cds-WP_038269635.1;Parent=gene-LPH39_RS05670;Dbxref=Genbank:WP_038269635.1;Name=WP_038269635.1;Ontology_term=GO:0003824;gbkey=CDS;gene=sucD;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812253.1;locus_tag=LPH39_RS05670;product=succinate--CoA ligase subunit alpha;protein_id=WP_038269635.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1394046 1395398 . - . ID=gene-LPH39_RS05675;Name=mnmE;gbkey=Gene;gene=mnmE;gene_biotype=protein_coding;locus_tag=LPH39_RS05675;old_locus_tag=LPH39_05675 NZ_CP087677.1 Protein Homology CDS 1394046 1395398 . - 0 ID=cds-WP_038269633.1;Parent=gene-LPH39_RS05675;Dbxref=Genbank:WP_038269633.1;Name=WP_038269633.1;Ontology_term=GO:0006400,GO:0003924,GO:0005515,GO:0005525;gbkey=CDS;gene=mnmE;go_function=GTPase activity|0003924||IEA,protein binding|0005515||IEA,GTP binding|0005525||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039299.1;locus_tag=LPH39_RS05675;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE;protein_id=WP_038269633.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1395395 1398109 . - . ID=gene-LPH39_RS05680;Name=LPH39_RS05680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05680;old_locus_tag=LPH39_05680 NZ_CP087677.1 Protein Homology CDS 1395395 1398109 . - 0 ID=cds-WP_038269631.1;Parent=gene-LPH39_RS05680;Dbxref=Genbank:WP_038269631.1;Name=WP_038269631.1;Ontology_term=GO:0005975,GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085096.1;locus_tag=LPH39_RS05680;product=polysaccharide deacetylase family protein;protein_id=WP_038269631.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1398198 1399889 . - . ID=gene-LPH39_RS05685;Name=yidC;gbkey=Gene;gene=yidC;gene_biotype=protein_coding;locus_tag=LPH39_RS05685;old_locus_tag=LPH39_05685 NZ_CP087677.1 Protein Homology CDS 1398198 1399889 . - 0 ID=cds-WP_038269630.1;Parent=gene-LPH39_RS05685;Dbxref=Genbank:WP_038269630.1;Name=WP_038269630.1;Ontology_term=GO:0032977,GO:0016020;gbkey=CDS;gene=yidC;go_component=membrane|0016020||IEA;go_function=membrane insertase activity|0032977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087831.1;locus_tag=LPH39_RS05685;product=membrane protein insertase YidC;protein_id=WP_038269630.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1399933 1400391 . - . ID=gene-LPH39_RS05690;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=LPH39_RS05690;old_locus_tag=LPH39_05690 NZ_CP087677.1 Protein Homology CDS 1399933 1400391 . - 0 ID=cds-WP_081755381.1;Parent=gene-LPH39_RS05690;Dbxref=Genbank:WP_081755381.1;Name=WP_081755381.1;Ontology_term=GO:0006396,GO:0004526;gbkey=CDS;gene=rnpA;go_function=ribonuclease P activity|0004526||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: protein motif:HMM:NF013022.2;locus_tag=LPH39_RS05690;product=ribonuclease P protein component;protein_id=WP_081755381.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1400399 1400539 . - . ID=gene-LPH39_RS05695;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=LPH39_RS05695;old_locus_tag=LPH39_05695 NZ_CP087677.1 Protein Homology CDS 1400399 1400539 . - 0 ID=cds-WP_038269628.1;Parent=gene-LPH39_RS05695;Dbxref=Genbank:WP_038269628.1;Name=WP_038269628.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmH;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006404565.1;locus_tag=LPH39_RS05695;product=50S ribosomal protein L34;protein_id=WP_038269628.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1400762 1402075 . + . ID=gene-LPH39_RS05700;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=LPH39_RS05700;old_locus_tag=LPH39_05700 NZ_CP087677.1 Protein Homology CDS 1400762 1402075 . + 0 ID=cds-WP_038269883.1;Parent=gene-LPH39_RS05700;Dbxref=Genbank:WP_038269883.1;Name=WP_038269883.1;Ontology_term=GO:0006270,GO:0006275,GO:0003677,GO:0003688,GO:0005524;gbkey=CDS;gene=dnaA;go_function=DNA binding|0003677||IEA,DNA replication origin binding|0003688||IEA,ATP binding|0005524||IEA;go_process=DNA replication initiation|0006270||IEA,regulation of DNA replication|0006275||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050021.1;locus_tag=LPH39_RS05700;product=chromosomal replication initiator protein DnaA;protein_id=WP_038269883.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1402347 1403456 . + . ID=gene-LPH39_RS05705;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=LPH39_RS05705;old_locus_tag=LPH39_05705 NZ_CP087677.1 Protein Homology CDS 1402347 1403456 . + 0 ID=cds-WP_038269626.1;Parent=gene-LPH39_RS05705;Dbxref=Genbank:WP_038269626.1;Name=WP_038269626.1;Ontology_term=GO:0006260,GO:0003887,GO:0009360;gbkey=CDS;gene=dnaN;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451791.1;locus_tag=LPH39_RS05705;product=DNA polymerase III subunit beta;protein_id=WP_038269626.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1404141 1405235 . + . ID=gene-LPH39_RS05710;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=LPH39_RS05710;old_locus_tag=LPH39_05710 NZ_CP087677.1 Protein Homology CDS 1404141 1405235 . + 0 ID=cds-WP_038269623.1;Parent=gene-LPH39_RS05710;Dbxref=Genbank:WP_038269623.1;Name=WP_038269623.1;Ontology_term=GO:0006281,GO:0003697,GO:0005524;gbkey=CDS;gene=recF;go_function=single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087835.1;locus_tag=LPH39_RS05710;product=DNA replication/repair protein RecF;protein_id=WP_038269623.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1405802 1408246 . + . ID=gene-LPH39_RS05715;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=LPH39_RS05715;old_locus_tag=LPH39_05715 NZ_CP087677.1 Protein Homology CDS 1405802 1408246 . + 0 ID=cds-WP_038269621.1;Parent=gene-LPH39_RS05715;Dbxref=Genbank:WP_038269621.1;Name=WP_038269621.1;Ontology_term=GO:0006265,GO:0003918,GO:0009330;gbkey=CDS;gene=gyrB;go_component=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) complex|0009330||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912438.1;locus_tag=LPH39_RS05715;product=DNA topoisomerase (ATP-hydrolyzing) subunit B;protein_id=WP_038269621.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1408295 1409125 . + . ID=gene-LPH39_RS05720;Name=LPH39_RS05720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05720;old_locus_tag=LPH39_05720 NZ_CP087677.1 Protein Homology CDS 1408295 1409125 . + 0 ID=cds-WP_081755380.1;Parent=gene-LPH39_RS05720;Dbxref=Genbank:WP_081755380.1;Name=WP_081755380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087837.1;locus_tag=LPH39_RS05720;product=CPBP family intramembrane metalloprotease;protein_id=WP_081755380.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1409188 1410003 . + . ID=gene-LPH39_RS05725;Name=LPH39_RS05725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05725;old_locus_tag=LPH39_05725 NZ_CP087677.1 Protein Homology CDS 1409188 1410003 . + 0 ID=cds-WP_038269619.1;Parent=gene-LPH39_RS05725;Dbxref=Genbank:WP_038269619.1;Name=WP_038269619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087838.1;locus_tag=LPH39_RS05725;product=M48 family metallopeptidase;protein_id=WP_038269619.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1410089 1411279 . + . ID=gene-LPH39_RS05730;Name=LPH39_RS05730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05730;old_locus_tag=LPH39_05730 NZ_CP087677.1 Protein Homology CDS 1410089 1411279 . + 0 ID=cds-WP_038269617.1;Parent=gene-LPH39_RS05730;Dbxref=Genbank:WP_038269617.1;Name=WP_038269617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376399.1;locus_tag=LPH39_RS05730;product=tetratricopeptide repeat protein;protein_id=WP_038269617.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1411840 1412502 . + . ID=gene-LPH39_RS05735;Name=LPH39_RS05735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05735;old_locus_tag=LPH39_05735 NZ_CP087677.1 Protein Homology CDS 1411840 1412502 . + 0 ID=cds-WP_230439357.1;Parent=gene-LPH39_RS05735;Dbxref=Genbank:WP_230439357.1;Name=WP_230439357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337543.1;locus_tag=LPH39_RS05735;product=energy transducer TonB;protein_id=WP_230439357.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1412579 1413343 . + . ID=gene-LPH39_RS05740;Name=exbB;gbkey=Gene;gene=exbB;gene_biotype=protein_coding;locus_tag=LPH39_RS05740;old_locus_tag=LPH39_05740 NZ_CP087677.1 Protein Homology CDS 1412579 1413343 . + 0 ID=cds-WP_038269615.1;Parent=gene-LPH39_RS05740;Dbxref=Genbank:WP_038269615.1;Name=WP_038269615.1;gbkey=CDS;gene=exbB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002805928.1;locus_tag=LPH39_RS05740;product=TonB-system energizer ExbB;protein_id=WP_038269615.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1413397 1413819 . + . ID=gene-LPH39_RS05745;Name=LPH39_RS05745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05745;old_locus_tag=LPH39_05745 NZ_CP087677.1 Protein Homology CDS 1413397 1413819 . + 0 ID=cds-WP_038269613.1;Parent=gene-LPH39_RS05745;Dbxref=Genbank:WP_038269613.1;Name=WP_038269613.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912447.1;locus_tag=LPH39_RS05745;product=biopolymer transporter ExbD;protein_id=WP_038269613.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1413823 1414242 . + . ID=gene-LPH39_RS05750;Name=LPH39_RS05750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05750;old_locus_tag=LPH39_05750 NZ_CP087677.1 Protein Homology CDS 1413823 1414242 . + 0 ID=cds-WP_038269611.1;Parent=gene-LPH39_RS05750;Dbxref=Genbank:WP_038269611.1;Name=WP_038269611.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155972.1;locus_tag=LPH39_RS05750;product=biopolymer transporter ExbD;protein_id=WP_038269611.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1414641 1414871 . + . ID=gene-LPH39_RS05755;Name=LPH39_RS05755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05755;old_locus_tag=LPH39_05755 NZ_CP087677.1 GeneMarkS-2+ CDS 1414641 1414871 . + 0 ID=cds-WP_038269609.1;Parent=gene-LPH39_RS05755;Dbxref=Genbank:WP_038269609.1;Name=WP_038269609.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05755;product=hypothetical protein;protein_id=WP_038269609.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1415215 1417587 . + . ID=gene-LPH39_RS05760;Name=LPH39_RS05760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05760;old_locus_tag=LPH39_05760 NZ_CP087677.1 Protein Homology CDS 1415215 1417587 . + 0 ID=cds-WP_038269608.1;Parent=gene-LPH39_RS05760;Dbxref=Genbank:WP_038269608.1;Name=WP_038269608.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451941.1;locus_tag=LPH39_RS05760;product=S9 family peptidase;protein_id=WP_038269608.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1417643 1418185 . + . ID=gene-LPH39_RS05765;Name=LPH39_RS05765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05765;old_locus_tag=LPH39_05765 NZ_CP087677.1 Protein Homology CDS 1417643 1418185 . + 0 ID=cds-WP_038269606.1;Parent=gene-LPH39_RS05765;Dbxref=Genbank:WP_038269606.1;Name=WP_038269606.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851940.1;locus_tag=LPH39_RS05765;product=hypothetical protein;protein_id=WP_038269606.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1418411 1419325 . + . ID=gene-LPH39_RS05770;Name=hemF;gbkey=Gene;gene=hemF;gene_biotype=protein_coding;locus_tag=LPH39_RS05770;old_locus_tag=LPH39_05770 NZ_CP087677.1 Protein Homology CDS 1418411 1419325 . + 0 ID=cds-WP_038269604.1;Parent=gene-LPH39_RS05770;Dbxref=Genbank:WP_038269604.1;Name=WP_038269604.1;Ontology_term=GO:0006779,GO:0004109;gbkey=CDS;gene=hemF;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085079.1;locus_tag=LPH39_RS05770;product=oxygen-dependent coproporphyrinogen oxidase;protein_id=WP_038269604.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1420526 1420693 . + . ID=gene-LPH39_RS05775;Name=LPH39_RS05775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05775;old_locus_tag=LPH39_05775 NZ_CP087677.1 GeneMarkS-2+ CDS 1420526 1420693 . + 0 ID=cds-WP_160165102.1;Parent=gene-LPH39_RS05775;Dbxref=Genbank:WP_160165102.1;Name=WP_160165102.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05775;product=hypothetical protein;protein_id=WP_160165102.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1420787 1421077 . + . ID=gene-LPH39_RS05780;Name=LPH39_RS05780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05780;old_locus_tag=LPH39_05780 NZ_CP087677.1 GeneMarkS-2+ CDS 1420787 1421077 . + 0 ID=cds-WP_038269602.1;Parent=gene-LPH39_RS05780;Dbxref=Genbank:WP_038269602.1;Name=WP_038269602.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05780;product=hypothetical protein;protein_id=WP_038269602.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1421342 1421884 . - . ID=gene-LPH39_RS05785;Name=LPH39_RS05785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05785;old_locus_tag=LPH39_05785 NZ_CP087677.1 GeneMarkS-2+ CDS 1421342 1421884 . - 0 ID=cds-WP_160165101.1;Parent=gene-LPH39_RS05785;Dbxref=Genbank:WP_160165101.1;Name=WP_160165101.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05785;product=hypothetical protein;protein_id=WP_160165101.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1422808 1422884 . - . ID=gene-LPH39_RS05790;Name=LPH39_RS05790;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS05790;old_locus_tag=LPH39_05790 NZ_CP087677.1 tRNAscan-SE tRNA 1422808 1422884 . - . ID=rna-LPH39_RS05790;Parent=gene-LPH39_RS05790;anticodon=(pos:complement(1422848..1422850));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05790;product=tRNA-Ile NZ_CP087677.1 tRNAscan-SE exon 1422808 1422884 . - . ID=exon-LPH39_RS05790-1;Parent=rna-LPH39_RS05790;anticodon=(pos:complement(1422848..1422850));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05790;product=tRNA-Ile NZ_CP087677.1 RefSeq gene 1423741 1424844 . - . ID=gene-LPH39_RS05795;Name=LPH39_RS05795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05795;old_locus_tag=LPH39_05795 NZ_CP087677.1 Protein Homology CDS 1423741 1424844 . - 0 ID=cds-WP_038269598.1;Parent=gene-LPH39_RS05795;Dbxref=Genbank:WP_038269598.1;Name=WP_038269598.1;Ontology_term=GO:0009423,GO:0003849;gbkey=CDS;go_function=3-deoxy-7-phosphoheptulonate synthase activity|0003849||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892575.1;locus_tag=LPH39_RS05795;product=3-deoxy-7-phosphoheptulonate synthase;protein_id=WP_038269598.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1424951 1425079 . - . ID=gene-LPH39_RS12015;Name=LPH39_RS12015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12015 NZ_CP087677.1 GeneMarkS-2+ CDS 1424951 1425079 . - 0 ID=cds-WP_267903164.1;Parent=gene-LPH39_RS12015;Dbxref=Genbank:WP_267903164.1;Name=WP_267903164.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12015;product=hypothetical protein;protein_id=WP_267903164.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1426839 1427402 . + . ID=gene-LPH39_RS05800;Name=LPH39_RS05800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05800;old_locus_tag=LPH39_05800 NZ_CP087677.1 Protein Homology CDS 1426839 1427402 . + 0 ID=cds-WP_038269594.1;Parent=gene-LPH39_RS05800;Dbxref=Genbank:WP_038269594.1;Name=WP_038269594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087851.1;locus_tag=LPH39_RS05800;product=Tfp pilus assembly protein FimT/FimU;protein_id=WP_038269594.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1427412 1427888 . + . ID=gene-LPH39_RS05805;Name=pilV;gbkey=Gene;gene=pilV;gene_biotype=protein_coding;locus_tag=LPH39_RS05805;old_locus_tag=LPH39_05805 NZ_CP087677.1 Protein Homology CDS 1427412 1427888 . + 0 ID=cds-WP_038269593.1;Parent=gene-LPH39_RS05805;Dbxref=Genbank:WP_038269593.1;Name=WP_038269593.1;gbkey=CDS;gene=pilV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087852.1;locus_tag=LPH39_RS05805;product=type IV pilus modification protein PilV;protein_id=WP_038269593.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1427885 1428841 . + . ID=gene-LPH39_RS05810;Name=LPH39_RS05810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05810;old_locus_tag=LPH39_05810 NZ_CP087677.1 Protein Homology CDS 1427885 1428841 . + 0 ID=cds-WP_038269591.1;Parent=gene-LPH39_RS05810;Dbxref=Genbank:WP_038269591.1;Name=WP_038269591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085075.1;locus_tag=LPH39_RS05810;product=PilW family protein;protein_id=WP_038269591.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1428838 1429425 . + . ID=gene-LPH39_RS05815;Name=LPH39_RS05815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05815;old_locus_tag=LPH39_05815 NZ_CP087677.1 Protein Homology CDS 1428838 1429425 . + 0 ID=cds-WP_038269588.1;Parent=gene-LPH39_RS05815;Dbxref=Genbank:WP_038269588.1;Name=WP_038269588.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085074.1;locus_tag=LPH39_RS05815;product=pilus assembly protein;protein_id=WP_038269588.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1429451 1433131 . + . ID=gene-LPH39_RS05820;Name=LPH39_RS05820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05820;old_locus_tag=LPH39_05820 NZ_CP087677.1 Protein Homology CDS 1429451 1433131 . + 0 ID=cds-WP_114867048.1;Parent=gene-LPH39_RS05820;Dbxref=Genbank:WP_114867048.1;Name=WP_114867048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097477.1;locus_tag=LPH39_RS05820;product=pilus assembly protein;protein_id=WP_114867048.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1433158 1433556 . + . ID=gene-LPH39_RS05825;Name=LPH39_RS05825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05825;old_locus_tag=LPH39_05825 NZ_CP087677.1 Protein Homology CDS 1433158 1433556 . + 0 ID=cds-WP_230428264.1;Parent=gene-LPH39_RS05825;Dbxref=Genbank:WP_230428264.1;Name=WP_230428264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097478.1;locus_tag=LPH39_RS05825;product=type IV pilin protein;protein_id=WP_230428264.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1434001 1434732 . - . ID=gene-LPH39_RS05830;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=LPH39_RS05830;old_locus_tag=LPH39_05830 NZ_CP087677.1 Protein Homology CDS 1434001 1434732 . - 0 ID=cds-WP_038272273.1;Parent=gene-LPH39_RS05830;Dbxref=Genbank:WP_038272273.1;Name=WP_038272273.1;Ontology_term=GO:0006207,GO:0044205,GO:0004590;gbkey=CDS;gene=pyrF;go_function=orotidine-5'-phosphate decarboxylase activity|0004590||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,'de novo' UMP biosynthetic process|0044205||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155183.1;locus_tag=LPH39_RS05830;product=orotidine-5'-phosphate decarboxylase;protein_id=WP_038272273.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1436132 1437334 . + . ID=gene-LPH39_RS05835;Name=LPH39_RS05835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05835;old_locus_tag=LPH39_05835 NZ_CP087677.1 Protein Homology CDS 1436132 1437334 . + 0 ID=cds-WP_038272274.1;Parent=gene-LPH39_RS05835;Dbxref=Genbank:WP_038272274.1;Name=WP_038272274.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851929.1;locus_tag=LPH39_RS05835;product=aspartate/tyrosine/aromatic aminotransferase;protein_id=WP_038272274.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1437889 1438293 . - . ID=gene-LPH39_RS05840;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=LPH39_RS05840;old_locus_tag=LPH39_05840 NZ_CP087677.1 Protein Homology CDS 1437889 1438293 . - 0 ID=cds-WP_038272276.1;Parent=gene-LPH39_RS05840;Dbxref=Genbank:WP_038272276.1;Name=WP_038272276.1;Ontology_term=GO:0034220,GO:0008381;gbkey=CDS;gene=mscL;go_function=mechanosensitive ion channel activity|0008381||IEA;go_process=ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085069.1;locus_tag=LPH39_RS05840;product=large-conductance mechanosensitive channel protein MscL;protein_id=WP_038272276.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1438436 1438591 . - . ID=gene-LPH39_RS05845;Name=LPH39_RS05845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05845;old_locus_tag=LPH39_05845 NZ_CP087677.1 GeneMarkS-2+ CDS 1438436 1438591 . - 0 ID=cds-WP_160165212.1;Parent=gene-LPH39_RS05845;Dbxref=Genbank:WP_160165212.1;Name=WP_160165212.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05845;product=hypothetical protein;protein_id=WP_160165212.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1439559 1439777 . + . ID=gene-LPH39_RS05850;Name=LPH39_RS05850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05850;old_locus_tag=LPH39_05850 NZ_CP087677.1 GeneMarkS-2+ CDS 1439559 1439777 . + 0 ID=cds-WP_152536650.1;Parent=gene-LPH39_RS05850;Dbxref=Genbank:WP_152536650.1;Name=WP_152536650.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05850;product=hypothetical protein;protein_id=WP_152536650.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1440322 1440465 . + . ID=gene-LPH39_RS05855;Name=LPH39_RS05855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05855;old_locus_tag=LPH39_05855 NZ_CP087677.1 GeneMarkS-2+ CDS 1440322 1440465 . + 0 ID=cds-WP_160165214.1;Parent=gene-LPH39_RS05855;Dbxref=Genbank:WP_160165214.1;Name=WP_160165214.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05855;product=hypothetical protein;protein_id=WP_160165214.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1440538 1441797 . + . ID=gene-LPH39_RS05860;Name=LPH39_RS05860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05860;old_locus_tag=LPH39_05860 NZ_CP087677.1 Protein Homology CDS 1440538 1441797 . + 0 ID=cds-WP_038272277.1;Parent=gene-LPH39_RS05860;Dbxref=Genbank:WP_038272277.1;Name=WP_038272277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851927.1;locus_tag=LPH39_RS05860;product=putative Na+/H+ antiporter;protein_id=WP_038272277.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1442409 1443290 . + . ID=gene-LPH39_RS05865;Name=rlmJ;gbkey=Gene;gene=rlmJ;gene_biotype=protein_coding;locus_tag=LPH39_RS05865;old_locus_tag=LPH39_05865 NZ_CP087677.1 Protein Homology CDS 1442409 1443290 . + 0 ID=cds-WP_038272279.1;Parent=gene-LPH39_RS05865;Dbxref=Genbank:WP_038272279.1;Name=WP_038272279.1;Ontology_term=GO:0070475,GO:0008649;gbkey=CDS;gene=rlmJ;go_function=rRNA methyltransferase activity|0008649||IEA;go_process=rRNA base methylation|0070475||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851926.1;locus_tag=LPH39_RS05865;product=23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ;protein_id=WP_038272279.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1444032 1444571 . + . ID=gene-LPH39_RS05870;Name=LPH39_RS05870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05870;old_locus_tag=LPH39_05870 NZ_CP087677.1 Protein Homology CDS 1444032 1444571 . + 0 ID=cds-WP_038272316.1;Parent=gene-LPH39_RS05870;Dbxref=Genbank:WP_038272316.1;Name=WP_038272316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892593.1;locus_tag=LPH39_RS05870;product=GNAT family N-acetyltransferase;protein_id=WP_038272316.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1444638 1448222 . + . ID=gene-LPH39_RS05875;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=LPH39_RS05875;old_locus_tag=LPH39_05875 NZ_CP087677.1 Protein Homology CDS 1444638 1448222 . + 0 ID=cds-WP_038272281.1;Parent=gene-LPH39_RS05875;Dbxref=Genbank:WP_038272281.1;Name=WP_038272281.1;Ontology_term=GO:0006281,GO:0003690,GO:0005515,GO:0005524,GO:0016887;gbkey=CDS;gene=mfd;go_function=double-stranded DNA binding|0003690||IEA,protein binding|0005515||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802759.1;locus_tag=LPH39_RS05875;product=transcription-repair coupling factor;protein_id=WP_038272281.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1449047 1449493 . + . ID=gene-LPH39_RS05880;Name=aroQ;gbkey=Gene;gene=aroQ;gene_biotype=protein_coding;locus_tag=LPH39_RS05880;old_locus_tag=LPH39_05880 NZ_CP087677.1 Protein Homology CDS 1449047 1449493 . + 0 ID=cds-WP_038272284.1;Parent=gene-LPH39_RS05880;Dbxref=Genbank:WP_038272284.1;Name=WP_038272284.1;Ontology_term=GO:0009423,GO:0003855;gbkey=CDS;gene=aroQ;go_function=3-dehydroquinate dehydratase activity|0003855||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087115.1;locus_tag=LPH39_RS05880;product=type II 3-dehydroquinate dehydratase;protein_id=WP_038272284.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1449544 1450029 . + . ID=gene-LPH39_RS05885;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;locus_tag=LPH39_RS05885;old_locus_tag=LPH39_05885 NZ_CP087677.1 Protein Homology CDS 1449544 1450029 . + 0 ID=cds-WP_038272286.1;Parent=gene-LPH39_RS05885;Dbxref=Genbank:WP_038272286.1;Name=WP_038272286.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accB;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087117.1;locus_tag=LPH39_RS05885;product=acetyl-CoA carboxylase biotin carboxyl carrier protein;protein_id=WP_038272286.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1450087 1451454 . + . ID=gene-LPH39_RS05890;Name=accC;gbkey=Gene;gene=accC;gene_biotype=protein_coding;locus_tag=LPH39_RS05890;old_locus_tag=LPH39_05890 NZ_CP087677.1 Protein Homology CDS 1450087 1451454 . + 0 ID=cds-WP_038272288.1;Parent=gene-LPH39_RS05890;Dbxref=Genbank:WP_038272288.1;Name=WP_038272288.1;Ontology_term=GO:0006633,GO:0003989,GO:0004075,GO:0009317;gbkey=CDS;gene=accC;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA,biotin carboxylase activity|0004075||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660825.1;locus_tag=LPH39_RS05890;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_038272288.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1451985 1454171 . - . ID=gene-LPH39_RS05895;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;locus_tag=LPH39_RS05895;old_locus_tag=LPH39_05895 NZ_CP087677.1 Protein Homology CDS 1451985 1454171 . - 0 ID=cds-WP_038272290.1;Parent=gene-LPH39_RS05895;Dbxref=Genbank:WP_038272290.1;Name=WP_038272290.1;Ontology_term=GO:0006281,GO:0003678;gbkey=CDS;gene=uvrD;go_function=DNA helicase activity|0003678||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809467.1;locus_tag=LPH39_RS05895;product=DNA helicase II;protein_id=WP_038272290.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1454610 1454951 . - . ID=gene-LPH39_RS05900;Name=LPH39_RS05900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05900;old_locus_tag=LPH39_05900 NZ_CP087677.1 GeneMarkS-2+ CDS 1454610 1454951 . - 0 ID=cds-WP_152536651.1;Parent=gene-LPH39_RS05900;Dbxref=Genbank:WP_152536651.1;Name=WP_152536651.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05900;product=hypothetical protein;protein_id=WP_152536651.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1455041 1456234 . + . ID=gene-LPH39_RS05905;Name=hmpA;gbkey=Gene;gene=hmpA;gene_biotype=protein_coding;locus_tag=LPH39_RS05905;old_locus_tag=LPH39_05905 NZ_CP087677.1 Protein Homology CDS 1455041 1456234 . + 0 ID=cds-WP_038272293.1;Parent=gene-LPH39_RS05905;Dbxref=Genbank:WP_038272293.1;Name=WP_038272293.1;Ontology_term=GO:0051409,GO:0008941,GO:0019825,GO:0020037,GO:0071949;gbkey=CDS;gene=hmpA;go_function=nitric oxide dioxygenase activity|0008941||IEA,oxygen binding|0019825||IEA,heme binding|0020037||IEA,FAD binding|0071949||IEA;go_process=response to nitrosative stress|0051409||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851920.1;locus_tag=LPH39_RS05905;product=NO-inducible flavohemoprotein;protein_id=WP_038272293.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1458547 1458825 . + . ID=gene-LPH39_RS05910;Name=LPH39_RS05910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05910;old_locus_tag=LPH39_05910 NZ_CP087677.1 Protein Homology CDS 1458547 1458825 . + 0 ID=cds-WP_038272319.1;Parent=gene-LPH39_RS05910;Dbxref=Genbank:WP_038272319.1;Name=WP_038272319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852838.1;locus_tag=LPH39_RS05910;product=DUF2244 domain-containing protein;protein_id=WP_038272319.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1458822 1459604 . + . ID=gene-LPH39_RS05915;Name=LPH39_RS05915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05915;old_locus_tag=LPH39_05915 NZ_CP087677.1 Protein Homology CDS 1458822 1459604 . + 0 ID=cds-WP_038272298.1;Parent=gene-LPH39_RS05915;Dbxref=Genbank:WP_038272298.1;Name=WP_038272298.1;Ontology_term=GO:0008615,GO:0033856;gbkey=CDS;go_function=pyridoxine 5'-phosphate synthase activity|0033856||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085059.1;locus_tag=LPH39_RS05915;product=pyridoxine 5'-phosphate synthase;protein_id=WP_038272298.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1461078 1462121 . - . ID=gene-LPH39_RS05920;Name=LPH39_RS05920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05920;old_locus_tag=LPH39_05920 NZ_CP087677.1 Protein Homology CDS 1461078 1462121 . - 0 ID=cds-WP_038272299.1;Parent=gene-LPH39_RS05920;Dbxref=Genbank:WP_038272299.1;Name=WP_038272299.1;Ontology_term=GO:0000910,GO:0007059,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cytokinesis|0000910||IEA,chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087145.1;locus_tag=LPH39_RS05920;product=ParB/RepB/Spo0J family partition protein;protein_id=WP_038272299.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1463810 1463971 . - . ID=gene-LPH39_RS05925;Name=LPH39_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05925;old_locus_tag=LPH39_05925 NZ_CP087677.1 GeneMarkS-2+ CDS 1463810 1463971 . - 0 ID=cds-WP_160165215.1;Parent=gene-LPH39_RS05925;Dbxref=Genbank:WP_160165215.1;Name=WP_160165215.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05925;product=hypothetical protein;protein_id=WP_160165215.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1464340 1465056 . - . ID=gene-LPH39_RS05930;Name=LPH39_RS05930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05930;old_locus_tag=LPH39_05930 NZ_CP087677.1 Protein Homology CDS 1464340 1465056 . - 0 ID=cds-WP_038272305.1;Parent=gene-LPH39_RS05930;Dbxref=Genbank:WP_038272305.1;Name=WP_038272305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852835.1;locus_tag=LPH39_RS05930;product=ComF family protein;protein_id=WP_038272305.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1465106 1466131 . + . ID=gene-LPH39_RS05935;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=LPH39_RS05935;old_locus_tag=LPH39_05935 NZ_CP087677.1 Protein Homology CDS 1465106 1466131 . + 0 ID=cds-WP_038272321.1;Parent=gene-LPH39_RS05935;Dbxref=Genbank:WP_038272321.1;Name=WP_038272321.1;Ontology_term=GO:0009102,GO:0004076,GO:0051537,GO:0051539,GO:1904047;gbkey=CDS;gene=bioB;go_function=biotin synthase activity|0004076||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892613.1;locus_tag=LPH39_RS05935;product=biotin synthase BioB;protein_id=WP_038272321.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1466518 1467555 . + . ID=gene-LPH39_RS05940;Name=LPH39_RS05940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05940;old_locus_tag=LPH39_05940 NZ_CP087677.1 Protein Homology CDS 1466518 1467555 . + 0 ID=cds-WP_038272307.1;Parent=gene-LPH39_RS05940;Dbxref=Genbank:WP_038272307.1;Name=WP_038272307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085056.1;locus_tag=LPH39_RS05940;product=patatin-like phospholipase family protein;protein_id=WP_038272307.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1468574 1469473 . - . ID=gene-LPH39_RS05945;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=LPH39_RS05945;old_locus_tag=LPH39_05945 NZ_CP087677.1 Protein Homology CDS 1468574 1469473 . - 0 ID=cds-WP_038272309.1;Parent=gene-LPH39_RS05945;Dbxref=Genbank:WP_038272309.1;Name=WP_038272309.1;Ontology_term=GO:0006744,GO:0008412;gbkey=CDS;gene=ubiA;go_function=4-hydroxybenzoate octaprenyltransferase activity|0008412||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085055.1;locus_tag=LPH39_RS05945;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_038272309.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1469580 1469656 . + . ID=gene-LPH39_RS05950;Name=LPH39_RS05950;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS05950;old_locus_tag=LPH39_05950 NZ_CP087677.1 tRNAscan-SE tRNA 1469580 1469656 . + . ID=rna-LPH39_RS05950;Parent=gene-LPH39_RS05950;anticodon=(pos:1469614..1469616);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05950;product=tRNA-Arg NZ_CP087677.1 tRNAscan-SE exon 1469580 1469656 . + . ID=exon-LPH39_RS05950-1;Parent=rna-LPH39_RS05950;anticodon=(pos:1469614..1469616);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05950;product=tRNA-Arg NZ_CP087677.1 RefSeq gene 1470547 1470720 . + . ID=gene-LPH39_RS05955;Name=LPH39_RS05955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05955;old_locus_tag=LPH39_05955 NZ_CP087677.1 GeneMarkS-2+ CDS 1470547 1470720 . + 0 ID=cds-WP_160165216.1;Parent=gene-LPH39_RS05955;Dbxref=Genbank:WP_160165216.1;Name=WP_160165216.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05955;product=hypothetical protein;protein_id=WP_160165216.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1471388 1471729 . - . ID=gene-LPH39_RS05960;Name=LPH39_RS05960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05960;old_locus_tag=LPH39_05960 NZ_CP087677.1 GeneMarkS-2+ CDS 1471388 1471729 . - 0 ID=cds-WP_152536652.1;Parent=gene-LPH39_RS05960;Dbxref=Genbank:WP_152536652.1;Name=WP_152536652.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05960;product=hypothetical protein;protein_id=WP_152536652.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1471959 1473494 . + . ID=gene-LPH39_RS05965;Name=dacB;gbkey=Gene;gene=dacB;gene_biotype=protein_coding;locus_tag=LPH39_RS05965;old_locus_tag=LPH39_05965 NZ_CP087677.1 Protein Homology CDS 1471959 1473494 . + 0 ID=cds-WP_081755472.1;Parent=gene-LPH39_RS05965;Dbxref=Genbank:WP_081755472.1;Name=WP_081755472.1;Ontology_term=GO:0009252,GO:0004175,GO:0009002;gbkey=CDS;gene=dacB;go_function=endopeptidase activity|0004175||IEA,serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852252.1;locus_tag=LPH39_RS05965;product=D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase;protein_id=WP_081755472.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1475176 1475577 . + . ID=gene-LPH39_RS05970;Name=LPH39_RS05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS05970;old_locus_tag=LPH39_05970 NZ_CP087677.1 GeneMarkS-2+ CDS 1475176 1475577 . + 0 ID=cds-WP_152536653.1;Parent=gene-LPH39_RS05970;Dbxref=Genbank:WP_152536653.1;Name=WP_152536653.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS05970;product=hypothetical protein;protein_id=WP_152536653.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1478009 1479553 . + . ID=gene-LPH39_RS05975;Name=LPH39_RS05975;gbkey=Gene;gene_biotype=rRNA;locus_tag=LPH39_RS05975;old_locus_tag=LPH39_05975 NZ_CP087677.1 cmsearch rRNA 1478009 1479553 . + . ID=rna-LPH39_RS05975;Parent=gene-LPH39_RS05975;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS05975;product=16S ribosomal RNA NZ_CP087677.1 cmsearch exon 1478009 1479553 . + . ID=exon-LPH39_RS05975-1;Parent=rna-LPH39_RS05975;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS05975;product=16S ribosomal RNA NZ_CP087677.1 RefSeq gene 1479648 1479723 . + . ID=gene-LPH39_RS05980;Name=LPH39_RS05980;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS05980;old_locus_tag=LPH39_05980 NZ_CP087677.1 tRNAscan-SE tRNA 1479648 1479723 . + . ID=rna-LPH39_RS05980;Parent=gene-LPH39_RS05980;anticodon=(pos:1479681..1479683);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05980;product=tRNA-Ala NZ_CP087677.1 tRNAscan-SE exon 1479648 1479723 . + . ID=exon-LPH39_RS05980-1;Parent=rna-LPH39_RS05980;anticodon=(pos:1479681..1479683);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05980;product=tRNA-Ala NZ_CP087677.1 RefSeq gene 1479735 1479811 . + . ID=gene-LPH39_RS05985;Name=LPH39_RS05985;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS05985;old_locus_tag=LPH39_05985 NZ_CP087677.1 tRNAscan-SE tRNA 1479735 1479811 . + . ID=rna-LPH39_RS05985;Parent=gene-LPH39_RS05985;anticodon=(pos:1479769..1479771);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05985;product=tRNA-Ile NZ_CP087677.1 tRNAscan-SE exon 1479735 1479811 . + . ID=exon-LPH39_RS05985-1;Parent=rna-LPH39_RS05985;anticodon=(pos:1479769..1479771);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS05985;product=tRNA-Ile NZ_CP087677.1 RefSeq gene 1480030 1482908 . + . ID=gene-LPH39_RS05990;Name=LPH39_RS05990;gbkey=Gene;gene_biotype=rRNA;locus_tag=LPH39_RS05990;old_locus_tag=LPH39_05990 NZ_CP087677.1 cmsearch rRNA 1480030 1482908 . + . ID=rna-LPH39_RS05990;Parent=gene-LPH39_RS05990;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS05990;product=23S ribosomal RNA NZ_CP087677.1 cmsearch exon 1480030 1482908 . + . ID=exon-LPH39_RS05990-1;Parent=rna-LPH39_RS05990;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS05990;product=23S ribosomal RNA NZ_CP087677.1 RefSeq gene 1483039 1483152 . + . ID=gene-LPH39_RS05995;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=LPH39_RS05995;old_locus_tag=LPH39_05995 NZ_CP087677.1 cmsearch rRNA 1483039 1483152 . + . ID=rna-LPH39_RS05995;Parent=gene-LPH39_RS05995;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS05995;product=5S ribosomal RNA NZ_CP087677.1 cmsearch exon 1483039 1483152 . + . ID=exon-LPH39_RS05995-1;Parent=rna-LPH39_RS05995;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS05995;product=5S ribosomal RNA NZ_CP087677.1 RefSeq gene 1483303 1484118 . + . ID=gene-LPH39_RS06000;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=LPH39_RS06000;old_locus_tag=LPH39_06000 NZ_CP087677.1 Protein Homology CDS 1483303 1484118 . + 0 ID=cds-WP_038273054.1;Parent=gene-LPH39_RS06000;Dbxref=Genbank:WP_038273054.1;Name=WP_038273054.1;Ontology_term=GO:0006281,GO:0006284,GO:0003676,GO:0003684,GO:0003906,GO:0008270,GO:0008534,GO:0016799,GO:0019104;gbkey=CDS;gene=mutM;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA,zinc ion binding|0008270||IEA,oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA,DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA,base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085054.1;locus_tag=LPH39_RS06000;product=bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase;protein_id=WP_038273054.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1484221 1484985 . - . ID=gene-LPH39_RS06005;Name=ccsA;gbkey=Gene;gene=ccsA;gene_biotype=protein_coding;locus_tag=LPH39_RS06005;old_locus_tag=LPH39_06005 NZ_CP087677.1 Protein Homology CDS 1484221 1484985 . - 0 ID=cds-WP_038273056.1;Parent=gene-LPH39_RS06005;Dbxref=Genbank:WP_038273056.1;Name=WP_038273056.1;Ontology_term=GO:0017004,GO:0020037;gbkey=CDS;gene=ccsA;go_function=heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085053.1;locus_tag=LPH39_RS06005;product=cytochrome c biogenesis protein CcsA;protein_id=WP_038273056.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1485137 1486504 . + . ID=gene-LPH39_RS06010;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=LPH39_RS06010;old_locus_tag=LPH39_06010 NZ_CP087677.1 Protein Homology CDS 1485137 1486504 . + 0 ID=cds-WP_038271862.1;Parent=gene-LPH39_RS06010;Dbxref=Genbank:WP_038271862.1;Name=WP_038271862.1;Ontology_term=GO:0009306,GO:0003924,GO:0005048,GO:0048501;gbkey=CDS;gene=ffh;go_component=signal recognition particle%2C plasma membrane targeting|0048501||IEA;go_function=GTPase activity|0003924||IEA,signal sequence binding|0005048||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407905.1;locus_tag=LPH39_RS06010;product=signal recognition particle protein;protein_id=WP_038271862.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1487564 1488361 . + . ID=gene-LPH39_RS06015;Name=LPH39_RS06015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06015;old_locus_tag=LPH39_06015 NZ_CP087677.1 Protein Homology CDS 1487564 1488361 . + 0 ID=cds-WP_038271859.1;Parent=gene-LPH39_RS06015;Dbxref=Genbank:WP_038271859.1;Name=WP_038271859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852873.1;locus_tag=LPH39_RS06015;product=aminotransferase class IV family protein;protein_id=WP_038271859.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1488758 1489750 . - . ID=gene-LPH39_RS06020;Name=LPH39_RS06020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06020;old_locus_tag=LPH39_06020 NZ_CP087677.1 Protein Homology CDS 1488758 1489750 . - 0 ID=cds-WP_230428138.1;Parent=gene-LPH39_RS06020;Dbxref=Genbank:WP_230428138.1;Name=WP_230428138.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337552.1;locus_tag=LPH39_RS06020;product=fimbrial protein;protein_id=WP_230428138.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1491616 1492623 . - . ID=gene-LPH39_RS06025;Name=LPH39_RS06025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06025;old_locus_tag=LPH39_06025 NZ_CP087677.1 Protein Homology CDS 1491616 1492623 . - 0 ID=cds-WP_230428139.1;Parent=gene-LPH39_RS06025;Dbxref=Genbank:WP_230428139.1;Name=WP_230428139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337552.1;locus_tag=LPH39_RS06025;product=fimbrial protein;protein_id=WP_230428139.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1492677 1495382 . - . ID=gene-LPH39_RS06030;Name=LPH39_RS06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06030;old_locus_tag=LPH39_06030 NZ_CP087677.1 Protein Homology CDS 1492677 1495382 . - 0 ID=cds-WP_038271854.1;Parent=gene-LPH39_RS06030;Dbxref=Genbank:WP_038271854.1;Name=WP_038271854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085564.1;locus_tag=LPH39_RS06030;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_038271854.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1495410 1496234 . - . ID=gene-LPH39_RS06035;Name=LPH39_RS06035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06035;old_locus_tag=LPH39_06035 NZ_CP087677.1 Protein Homology CDS 1495410 1496234 . - 0 ID=cds-WP_230428495.1;Parent=gene-LPH39_RS06035;Dbxref=Genbank:WP_230428495.1;Name=WP_230428495.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085563.1;locus_tag=LPH39_RS06035;product=fimbria/pilus periplasmic chaperone;protein_id=WP_230428495.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1496279 1496833 . - . ID=gene-LPH39_RS06040;Name=LPH39_RS06040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06040;old_locus_tag=LPH39_06040 NZ_CP087677.1 Protein Homology CDS 1496279 1496833 . - 0 ID=cds-WP_038271866.1;Parent=gene-LPH39_RS06040;Dbxref=Genbank:WP_038271866.1;Name=WP_038271866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085562.1;locus_tag=LPH39_RS06040;product=fimbrial protein;protein_id=WP_038271866.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1499582 1500070 . - . ID=gene-LPH39_RS06045;Name=LPH39_RS06045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06045;old_locus_tag=LPH39_06045 NZ_CP087677.1 Protein Homology CDS 1499582 1500070 . - 0 ID=cds-WP_038271852.1;Parent=gene-LPH39_RS06045;Dbxref=Genbank:WP_038271852.1;Name=WP_038271852.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087680.1;locus_tag=LPH39_RS06045;product=CinA family protein;protein_id=WP_038271852.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1500154 1501461 . - . ID=gene-LPH39_RS06050;Name=LPH39_RS06050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06050;old_locus_tag=LPH39_06050 NZ_CP087677.1 Protein Homology CDS 1500154 1501461 . - 0 ID=cds-WP_038271849.1;Parent=gene-LPH39_RS06050;Dbxref=Genbank:WP_038271849.1;Name=WP_038271849.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087678.1;locus_tag=LPH39_RS06050;product=MFS family transporter;protein_id=WP_038271849.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1501517 1502890 . - . ID=gene-LPH39_RS06055;Name=hflX;gbkey=Gene;gene=hflX;gene_biotype=protein_coding;locus_tag=LPH39_RS06055;old_locus_tag=LPH39_06055 NZ_CP087677.1 Protein Homology CDS 1501517 1502890 . - 0 ID=cds-WP_038271847.1;Parent=gene-LPH39_RS06055;Dbxref=Genbank:WP_038271847.1;Name=WP_038271847.1;Ontology_term=GO:0005525;gbkey=CDS;gene=hflX;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853003.1;locus_tag=LPH39_RS06055;product=GTPase HflX;protein_id=WP_038271847.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1502905 1503183 . - . ID=gene-LPH39_RS06060;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=LPH39_RS06060;old_locus_tag=LPH39_06060 NZ_CP087677.1 Protein Homology CDS 1502905 1503183 . - 0 ID=cds-WP_038271845.1;Parent=gene-LPH39_RS06060;Dbxref=Genbank:WP_038271845.1;Name=WP_038271845.1;Ontology_term=GO:0006355,GO:0003723;gbkey=CDS;gene=hfq;go_function=RNA binding|0003723||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085558.1;locus_tag=LPH39_RS06060;product=RNA chaperone Hfq;protein_id=WP_038271845.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1503257 1504240 . - . ID=gene-LPH39_RS06065;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=LPH39_RS06065;old_locus_tag=LPH39_06065 NZ_CP087677.1 Protein Homology CDS 1503257 1504240 . - 0 ID=cds-WP_038271843.1;Parent=gene-LPH39_RS06065;Dbxref=Genbank:WP_038271843.1;Name=WP_038271843.1;Ontology_term=GO:0006400,GO:0052381,GO:0005737;gbkey=CDS;gene=miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA dimethylallyltransferase activity|0052381||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507485.1;locus_tag=LPH39_RS06065;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=WP_038271843.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1504240 1505127 . - . ID=gene-LPH39_RS06070;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=LPH39_RS06070;old_locus_tag=LPH39_06070 NZ_CP087677.1 Protein Homology CDS 1504240 1505127 . - 0 ID=cds-WP_038271841.1;Parent=gene-LPH39_RS06070;Dbxref=Genbank:WP_038271841.1;Name=WP_038271841.1;Ontology_term=GO:0009396,GO:0004156;gbkey=CDS;gene=folP;go_function=dihydropteroate synthase activity|0004156||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008268106.1;locus_tag=LPH39_RS06070;product=dihydropteroate synthase;protein_id=WP_038271841.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1505413 1507344 . - . ID=gene-LPH39_RS06075;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;locus_tag=LPH39_RS06075;old_locus_tag=LPH39_06075 NZ_CP087677.1 Protein Homology CDS 1505413 1507344 . - 0 ID=cds-WP_038271839.1;Parent=gene-LPH39_RS06075;Dbxref=Genbank:WP_038271839.1;Name=WP_038271839.1;Ontology_term=GO:0006508,GO:0051301,GO:0004222,GO:0016887;gbkey=CDS;gene=ftsH;go_function=metalloendopeptidase activity|0004222||IEA,ATP hydrolysis activity|0016887||IEA;go_process=proteolysis|0006508||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019399873.1;locus_tag=LPH39_RS06075;product=ATP-dependent zinc metalloprotease FtsH;protein_id=WP_038271839.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1507397 1508038 . - . ID=gene-LPH39_RS06080;Name=rlmE;gbkey=Gene;gene=rlmE;gene_biotype=protein_coding;locus_tag=LPH39_RS06080;old_locus_tag=LPH39_06080 NZ_CP087677.1 Protein Homology CDS 1507397 1508038 . - 0 ID=cds-WP_038271837.1;Parent=gene-LPH39_RS06080;Dbxref=Genbank:WP_038271837.1;Name=WP_038271837.1;Ontology_term=GO:0001510,GO:0006364,GO:0016436;gbkey=CDS;gene=rlmE;go_function=rRNA (uridine) methyltransferase activity|0016436||IEA;go_process=RNA methylation|0001510||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851792.1;locus_tag=LPH39_RS06080;product=23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE;protein_id=WP_038271837.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1508107 1508412 . + . ID=gene-LPH39_RS06085;Name=yhbY;gbkey=Gene;gene=yhbY;gene_biotype=protein_coding;locus_tag=LPH39_RS06085;old_locus_tag=LPH39_06085 NZ_CP087677.1 Protein Homology CDS 1508107 1508412 . + 0 ID=cds-WP_038271836.1;Parent=gene-LPH39_RS06085;Dbxref=Genbank:WP_038271836.1;Name=WP_038271836.1;Ontology_term=GO:0008150,GO:0003723,GO:0005737;gbkey=CDS;gene=yhbY;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300317.1;locus_tag=LPH39_RS06085;product=ribosome assembly RNA-binding protein YhbY;protein_id=WP_038271836.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1508431 1508820 . + . ID=gene-LPH39_RS06090;Name=LPH39_RS06090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06090;old_locus_tag=LPH39_06090 NZ_CP087677.1 Protein Homology CDS 1508431 1508820 . + 0 ID=cds-WP_038271835.1;Parent=gene-LPH39_RS06090;Dbxref=Genbank:WP_038271835.1;Name=WP_038271835.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085551.1;locus_tag=LPH39_RS06090;product=MTH938/NDUFAF3 family protein;protein_id=WP_038271835.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1509365 1509559 . + . ID=gene-LPH39_RS06095;Name=LPH39_RS06095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06095;old_locus_tag=LPH39_06095 NZ_CP087677.1 GeneMarkS-2+ CDS 1509365 1509559 . + 0 ID=cds-WP_038271834.1;Parent=gene-LPH39_RS06095;Dbxref=Genbank:WP_038271834.1;Name=WP_038271834.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06095;product=hypothetical protein;protein_id=WP_038271834.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1509637 1511475 . - . ID=gene-LPH39_RS06100;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=LPH39_RS06100;old_locus_tag=LPH39_06100 NZ_CP087677.1 Protein Homology CDS 1509637 1511475 . - 0 ID=cds-WP_038271833.1;Parent=gene-LPH39_RS06100;Dbxref=Genbank:WP_038271833.1;Name=WP_038271833.1;Ontology_term=GO:0009082,GO:0004160;gbkey=CDS;gene=ilvD;go_function=dihydroxy-acid dehydratase activity|0004160||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437115.1;locus_tag=LPH39_RS06100;product=dihydroxy-acid dehydratase;protein_id=WP_038271833.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1512131 1512301 . + . ID=gene-LPH39_RS06105;Name=LPH39_RS06105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06105;old_locus_tag=LPH39_06105 NZ_CP087677.1 GeneMarkS-2+ CDS 1512131 1512301 . + 0 ID=cds-WP_160165199.1;Parent=gene-LPH39_RS06105;Dbxref=Genbank:WP_160165199.1;Name=WP_160165199.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06105;product=hypothetical protein;protein_id=WP_160165199.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1512418 1512567 . - . ID=gene-LPH39_RS06110;Name=LPH39_RS06110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06110;old_locus_tag=LPH39_06110 NZ_CP087677.1 GeneMarkS-2+ CDS 1512418 1512567 . - 0 ID=cds-WP_160165198.1;Parent=gene-LPH39_RS06110;Dbxref=Genbank:WP_160165198.1;Name=WP_160165198.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06110;product=hypothetical protein;protein_id=WP_160165198.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1512868 1513065 . + . ID=gene-LPH39_RS06115;Name=LPH39_RS06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06115;old_locus_tag=LPH39_06115 NZ_CP087677.1 Protein Homology CDS 1512868 1513065 . + 0 ID=cds-WP_038271831.1;Parent=gene-LPH39_RS06115;Dbxref=Genbank:WP_038271831.1;Name=WP_038271831.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483377.1;locus_tag=LPH39_RS06115;product=zinc-finger domain-containing protein;protein_id=WP_038271831.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1513081 1514193 . + . ID=gene-LPH39_RS06120;Name=LPH39_RS06120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06120;old_locus_tag=LPH39_06120 NZ_CP087677.1 Protein Homology CDS 1513081 1514193 . + 0 ID=cds-WP_038271830.1;Parent=gene-LPH39_RS06120;Dbxref=Genbank:WP_038271830.1;Name=WP_038271830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851795.1;locus_tag=LPH39_RS06120;product=glycosyltransferase;protein_id=WP_038271830.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1514174 1515520 . + . ID=gene-LPH39_RS06125;Name=LPH39_RS06125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06125;old_locus_tag=LPH39_06125 NZ_CP087677.1 Protein Homology CDS 1514174 1515520 . + 0 ID=cds-WP_038271829.1;Parent=gene-LPH39_RS06125;Dbxref=Genbank:WP_038271829.1;Name=WP_038271829.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851796.1;locus_tag=LPH39_RS06125;product=O-antigen ligase;protein_id=WP_038271829.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1515717 1516637 . - . ID=gene-LPH39_RS06130;Name=LPH39_RS06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06130;old_locus_tag=LPH39_06130 NZ_CP087677.1 Protein Homology CDS 1515717 1516637 . - 0 ID=cds-WP_038271828.1;Parent=gene-LPH39_RS06130;Dbxref=Genbank:WP_038271828.1;Name=WP_038271828.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851797.1;locus_tag=LPH39_RS06130;product=LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase;protein_id=WP_038271828.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1516718 1518028 . + . ID=gene-LPH39_RS06135;Name=waaA;gbkey=Gene;gene=waaA;gene_biotype=protein_coding;locus_tag=LPH39_RS06135;old_locus_tag=LPH39_06135 NZ_CP087677.1 Protein Homology CDS 1516718 1518028 . + 0 ID=cds-WP_038271827.1;Parent=gene-LPH39_RS06135;Dbxref=Genbank:WP_038271827.1;Name=WP_038271827.1;Ontology_term=GO:0016740;gbkey=CDS;gene=waaA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097494.1;locus_tag=LPH39_RS06135;product=lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_038271827.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1519411 1520793 . + . ID=gene-LPH39_RS06140;Name=LPH39_RS06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06140;old_locus_tag=LPH39_06140 NZ_CP087677.1 Protein Homology CDS 1519411 1520793 . + 0 ID=cds-WP_038271826.1;Parent=gene-LPH39_RS06140;Dbxref=Genbank:WP_038271826.1;Name=WP_038271826.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085544.1;locus_tag=LPH39_RS06140;product=alpha-L-fucosidase;protein_id=WP_038271826.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1522103 1522363 . + . ID=gene-LPH39_RS06145;Name=LPH39_RS06145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06145;old_locus_tag=LPH39_06145 NZ_CP087677.1 GeneMarkS-2+ CDS 1522103 1522363 . + 0 ID=cds-WP_152536642.1;Parent=gene-LPH39_RS06145;Dbxref=Genbank:WP_152536642.1;Name=WP_152536642.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06145;product=hypothetical protein;protein_id=WP_152536642.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1523658 1523918 . + . ID=gene-LPH39_RS06150;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=LPH39_RS06150;old_locus_tag=LPH39_06150 NZ_CP087677.1 Protein Homology CDS 1523658 1523918 . + 0 ID=cds-WP_038271824.1;Parent=gene-LPH39_RS06150;Dbxref=Genbank:WP_038271824.1;Name=WP_038271824.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsP;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036396.1;locus_tag=LPH39_RS06150;product=30S ribosomal protein S16;protein_id=WP_038271824.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1523963 1524475 . + . ID=gene-LPH39_RS06155;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=LPH39_RS06155;old_locus_tag=LPH39_06155 NZ_CP087677.1 Protein Homology CDS 1523963 1524475 . + 0 ID=cds-WP_038271823.1;Parent=gene-LPH39_RS06155;Dbxref=Genbank:WP_038271823.1;Name=WP_038271823.1;Note=Essential for efficient processing of 16S rRNA;Ontology_term=GO:0006364,GO:0003723;gbkey=CDS;gene=rimM;go_function=RNA binding|0003723||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085542.1;locus_tag=LPH39_RS06155;product=ribosome maturation factor RimM;protein_id=WP_038271823.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1524587 1525360 . + . ID=gene-LPH39_RS06160;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=LPH39_RS06160;old_locus_tag=LPH39_06160 NZ_CP087677.1 Protein Homology CDS 1524587 1525360 . + 0 ID=cds-WP_038271822.1;Parent=gene-LPH39_RS06160;Dbxref=Genbank:WP_038271822.1;Name=WP_038271822.1;Ontology_term=GO:0008033,GO:0052906;gbkey=CDS;gene=trmD;go_function=tRNA (guanine(37)-N(1))-methyltransferase activity|0052906||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892655.1;locus_tag=LPH39_RS06160;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=WP_038271822.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1525536 1525946 . + . ID=gene-LPH39_RS06165;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=LPH39_RS06165;old_locus_tag=LPH39_06165 NZ_CP087677.1 Protein Homology CDS 1525536 1525946 . + 0 ID=cds-WP_038271821.1;Parent=gene-LPH39_RS06165;Dbxref=Genbank:WP_038271821.1;Name=WP_038271821.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplS;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892656.1;locus_tag=LPH39_RS06165;product=50S ribosomal protein L19;protein_id=WP_038271821.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1526516 1527292 . + . ID=gene-LPH39_RS06170;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=LPH39_RS06170;old_locus_tag=LPH39_06170 NZ_CP087677.1 Protein Homology CDS 1526516 1527292 . + 0 ID=cds-WP_038271820.1;Parent=gene-LPH39_RS06170;Dbxref=Genbank:WP_038271820.1;Name=WP_038271820.1;Ontology_term=GO:0036211;gbkey=CDS;gene=map;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085539.1;locus_tag=LPH39_RS06170;product=type I methionyl aminopeptidase;protein_id=WP_038271820.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1527332 1529908 . + . ID=gene-LPH39_RS06175;Name=glnD;gbkey=Gene;gene=glnD;gene_biotype=pseudogene;locus_tag=LPH39_RS06175;old_locus_tag=LPH39_06175;pseudo=true NZ_CP087677.1 Protein Homology CDS 1527332 1529908 . + 0 ID=cds-LPH39_RS06175;Parent=gene-LPH39_RS06175;Note=frameshifted%3B internal stop;Ontology_term=GO:0018177,GO:0008773;gbkey=CDS;gene=glnD;go_function=[protein-PII] uridylyltransferase activity|0008773||IEA;go_process=protein uridylylation|0018177||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810763.1;locus_tag=LPH39_RS06175;product=[protein-PII] uridylyltransferase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1529905 1530804 . + . ID=gene-LPH39_RS06180;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=LPH39_RS06180;old_locus_tag=LPH39_06180 NZ_CP087677.1 Protein Homology CDS 1529905 1530804 . + 0 ID=cds-WP_038271818.1;Parent=gene-LPH39_RS06180;Dbxref=Genbank:WP_038271818.1;Name=WP_038271818.1;Ontology_term=GO:0009089,GO:0008666;gbkey=CDS;gene=dapD;go_function=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase activity|0008666||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851801.1;locus_tag=LPH39_RS06180;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_038271818.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1530819 1531175 . + . ID=gene-LPH39_RS06185;Name=LPH39_RS06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06185;old_locus_tag=LPH39_06185 NZ_CP087677.1 Protein Homology CDS 1530819 1531175 . + 0 ID=cds-WP_038271816.1;Parent=gene-LPH39_RS06185;Dbxref=Genbank:WP_038271816.1;Name=WP_038271816.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115327.1;locus_tag=LPH39_RS06185;product=Spx/MgsR family RNA polymerase-binding regulatory protein;protein_id=WP_038271816.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1531326 1532459 . + . ID=gene-LPH39_RS06190;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;locus_tag=LPH39_RS06190;old_locus_tag=LPH39_06190 NZ_CP087677.1 Protein Homology CDS 1531326 1532459 . + 0 ID=cds-WP_038271813.1;Parent=gene-LPH39_RS06190;Dbxref=Genbank:WP_038271813.1;Name=WP_038271813.1;Ontology_term=GO:0009089,GO:0009014;gbkey=CDS;gene=dapE;go_function=succinyl-diaminopimelate desuccinylase activity|0009014||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097497.1;locus_tag=LPH39_RS06190;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_038271813.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1532861 1534552 . + . ID=gene-LPH39_RS06195;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=LPH39_RS06195;old_locus_tag=LPH39_06195 NZ_CP087677.1 Protein Homology CDS 1532861 1534552 . + 0 ID=cds-WP_038271812.1;Parent=gene-LPH39_RS06195;Dbxref=Genbank:WP_038271812.1;Name=WP_038271812.1;Ontology_term=GO:0006529,GO:0004066;gbkey=CDS;gene=asnB;go_function=asparagine synthase (glutamine-hydrolyzing) activity|0004066||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008268785.1;locus_tag=LPH39_RS06195;product=asparagine synthase B;protein_id=WP_038271812.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1534611 1535636 . - . ID=gene-LPH39_RS06200;Name=LPH39_RS06200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06200;old_locus_tag=LPH39_06200 NZ_CP087677.1 Protein Homology CDS 1534611 1535636 . - 0 ID=cds-WP_038271810.1;Parent=gene-LPH39_RS06200;Dbxref=Genbank:WP_038271810.1;Name=WP_038271810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155705.1;locus_tag=LPH39_RS06200;product=right-handed parallel beta-helix repeat-containing protein;protein_id=WP_038271810.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1537126 1538154 . + . ID=gene-LPH39_RS06205;Name=LPH39_RS06205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06205;old_locus_tag=LPH39_06205 NZ_CP087677.1 Protein Homology CDS 1537126 1538154 . + 0 ID=cds-WP_201745795.1;Parent=gene-LPH39_RS06205;Dbxref=Genbank:WP_201745795.1;Name=WP_201745795.1;Ontology_term=GO:0018580;gbkey=CDS;go_function=nitronate monooxygenase activity|0018580||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085533.1;locus_tag=LPH39_RS06205;product=nitronate monooxygenase;protein_id=WP_201745795.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1539061 1539216 . - . ID=gene-LPH39_RS06210;Name=LPH39_RS06210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06210;old_locus_tag=LPH39_06210 NZ_CP087677.1 GeneMarkS-2+ CDS 1539061 1539216 . - 0 ID=cds-WP_160165196.1;Parent=gene-LPH39_RS06210;Dbxref=Genbank:WP_160165196.1;Name=WP_160165196.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06210;product=hypothetical protein;protein_id=WP_160165196.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1540054 1540689 . + . ID=gene-LPH39_RS06215;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;locus_tag=LPH39_RS06215;old_locus_tag=LPH39_06215 NZ_CP087677.1 Protein Homology CDS 1540054 1540689 . + 0 ID=cds-WP_038271803.1;Parent=gene-LPH39_RS06215;Dbxref=Genbank:WP_038271803.1;Name=WP_038271803.1;Ontology_term=GO:0006282,GO:0006355,GO:0004252;gbkey=CDS;gene=lexA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=regulation of DNA repair|0006282||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269877.1;locus_tag=LPH39_RS06215;product=transcriptional repressor LexA;protein_id=WP_038271803.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1540870 1541907 . + . ID=gene-LPH39_RS06220;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=LPH39_RS06220;old_locus_tag=LPH39_06220 NZ_CP087677.1 Protein Homology CDS 1540870 1541907 . + 0 ID=cds-WP_038271801.1;Parent=gene-LPH39_RS06220;Dbxref=Genbank:WP_038271801.1;Name=WP_038271801.1;Ontology_term=GO:0006281,GO:0006310,GO:0009432,GO:0003677,GO:0008094,GO:0005737;gbkey=CDS;gene=recA;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA,ATP-dependent activity%2C acting on DNA|0008094||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA,SOS response|0009432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992375.1;locus_tag=LPH39_RS06220;product=recombinase RecA;protein_id=WP_038271801.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1542623 1545274 . + . ID=gene-LPH39_RS06225;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=LPH39_RS06225;old_locus_tag=LPH39_06225 NZ_CP087677.1 Protein Homology CDS 1542623 1545274 . + 0 ID=cds-WP_038271800.1;Parent=gene-LPH39_RS06225;Dbxref=Genbank:WP_038271800.1;Name=WP_038271800.1;Ontology_term=GO:0006419,GO:0004813,GO:0005737;gbkey=CDS;gene=alaS;go_component=cytoplasm|0005737||IEA;go_function=alanine-tRNA ligase activity|0004813||IEA;go_process=alanyl-tRNA aminoacylation|0006419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087615.1;locus_tag=LPH39_RS06225;product=alanine--tRNA ligase;protein_id=WP_038271800.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1545414 1545629 . + . ID=gene-LPH39_RS06230;Name=csrA;gbkey=Gene;gene=csrA;gene_biotype=protein_coding;locus_tag=LPH39_RS06230;old_locus_tag=LPH39_06230 NZ_CP087677.1 Protein Homology CDS 1545414 1545629 . + 0 ID=cds-WP_038271798.1;Parent=gene-LPH39_RS06230;Dbxref=Genbank:WP_038271798.1;Name=WP_038271798.1;Ontology_term=GO:0006109,GO:0006402,GO:0003723;gbkey=CDS;gene=csrA;go_function=RNA binding|0003723||IEA;go_process=regulation of carbohydrate metabolic process|0006109||IEA,mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085529.1;locus_tag=LPH39_RS06230;product=carbon storage regulator CsrA;protein_id=WP_038271798.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1545707 1545799 . + . ID=gene-LPH39_RS06235;Name=LPH39_RS06235;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS06235;old_locus_tag=LPH39_06235 NZ_CP087677.1 tRNAscan-SE tRNA 1545707 1545799 . + . ID=rna-LPH39_RS06235;Parent=gene-LPH39_RS06235;anticodon=(pos:1545741..1545743);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06235;product=tRNA-Ser NZ_CP087677.1 tRNAscan-SE exon 1545707 1545799 . + . ID=exon-LPH39_RS06235-1;Parent=rna-LPH39_RS06235;anticodon=(pos:1545741..1545743);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06235;product=tRNA-Ser NZ_CP087677.1 RefSeq gene 1546800 1548824 . - . ID=gene-LPH39_RS06240;Name=LPH39_RS06240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06240;old_locus_tag=LPH39_06240 NZ_CP087677.1 Protein Homology CDS 1546800 1548824 . - 0 ID=cds-WP_038271796.1;Parent=gene-LPH39_RS06240;Dbxref=Genbank:WP_038271796.1;Name=WP_038271796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892672.1;locus_tag=LPH39_RS06240;product=M3 family metallopeptidase;protein_id=WP_038271796.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1548883 1549989 . - . ID=gene-LPH39_RS06245;Name=LPH39_RS06245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06245;old_locus_tag=LPH39_06245 NZ_CP087677.1 Protein Homology CDS 1548883 1549989 . - 0 ID=cds-WP_038271794.1;Parent=gene-LPH39_RS06245;Dbxref=Genbank:WP_038271794.1;Name=WP_038271794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304765.1;locus_tag=LPH39_RS06245;product=PLP-dependent cysteine synthase family protein;protein_id=WP_038271794.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1550182 1550772 . + . ID=gene-LPH39_RS06250;Name=LPH39_RS06250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06250;old_locus_tag=LPH39_06250 NZ_CP087677.1 Protein Homology CDS 1550182 1550772 . + 0 ID=cds-WP_230428142.1;Parent=gene-LPH39_RS06250;Dbxref=Genbank:WP_230428142.1;Name=WP_230428142.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852913.1;locus_tag=LPH39_RS06250;product=CopL family metal-binding regulatory protein;protein_id=WP_230428142.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1550875 1552698 . + . ID=gene-LPH39_RS06255;Name=LPH39_RS06255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06255;old_locus_tag=LPH39_06255 NZ_CP087677.1 Protein Homology CDS 1550875 1552698 . + 0 ID=cds-WP_038271792.1;Parent=gene-LPH39_RS06255;Dbxref=Genbank:WP_038271792.1;Name=WP_038271792.1;Ontology_term=GO:0006825,GO:0005375,GO:0005507;gbkey=CDS;go_function=copper ion transmembrane transporter activity|0005375||IEA,copper ion binding|0005507||IEA;go_process=copper ion transport|0006825||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337562.1;locus_tag=LPH39_RS06255;product=copper resistance system multicopper oxidase;protein_id=WP_038271792.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1552920 1553093 . + . ID=gene-LPH39_RS12020;Name=LPH39_RS12020;end_range=1553093,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS12020;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1552920 1553093 . + 0 ID=cds-LPH39_RS12020;Parent=gene-LPH39_RS12020;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1553093,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_032491577.1;locus_tag=LPH39_RS12020;partial=true;product=copper resistance protein B;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1553412 1554020 . + . ID=gene-LPH39_RS06260;Name=LPH39_RS06260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06260;old_locus_tag=LPH39_06260 NZ_CP087677.1 Protein Homology CDS 1553412 1554020 . + 0 ID=cds-WP_267903178.1;Parent=gene-LPH39_RS06260;Dbxref=Genbank:WP_267903178.1;Name=WP_267903178.1;Ontology_term=GO:0006878,GO:0005507,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=copper ion binding|0005507||IEA;go_process=cellular copper ion homeostasis|0006878||IEA;inference=COORDINATES: protein motif:HMM:NF017119.2;locus_tag=LPH39_RS06260;product=copper resistance protein B;protein_id=WP_267903178.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1554676 1557642 . - . ID=gene-LPH39_RS06265;Name=LPH39_RS06265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06265;old_locus_tag=LPH39_06265 NZ_CP087677.1 Protein Homology CDS 1554676 1557642 . - 0 ID=cds-WP_038272400.1;Parent=gene-LPH39_RS06265;Dbxref=Genbank:WP_038272400.1;Name=WP_038272400.1;Ontology_term=GO:0006438,GO:0000166,GO:0004812,GO:0004832,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,valine-tRNA ligase activity|0004832||IEA,ATP binding|0005524||IEA;go_process=valyl-tRNA aminoacylation|0006438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087603.1;locus_tag=LPH39_RS06265;product=valine--tRNA ligase;protein_id=WP_038272400.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1557680 1557877 . - . ID=gene-LPH39_RS06270;Name=LPH39_RS06270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06270;old_locus_tag=LPH39_06270 NZ_CP087677.1 Protein Homology CDS 1557680 1557877 . - 0 ID=cds-WP_038272397.1;Parent=gene-LPH39_RS06270;Dbxref=Genbank:WP_038272397.1;Name=WP_038272397.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097503.1;locus_tag=LPH39_RS06270;product=hypothetical protein;protein_id=WP_038272397.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1557912 1558337 . - . ID=gene-LPH39_RS06275;Name=LPH39_RS06275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06275;old_locus_tag=LPH39_06275 NZ_CP087677.1 Protein Homology CDS 1557912 1558337 . - 0 ID=cds-WP_038272394.1;Parent=gene-LPH39_RS06275;Dbxref=Genbank:WP_038272394.1;Name=WP_038272394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902887.1;locus_tag=LPH39_RS06275;product=DNA polymerase III subunit chi;protein_id=WP_038272394.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1558337 1558723 . - . ID=gene-LPH39_RS06280;Name=LPH39_RS06280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06280;old_locus_tag=LPH39_06280 NZ_CP087677.1 Protein Homology CDS 1558337 1558723 . - 0 ID=cds-WP_230428143.1;Parent=gene-LPH39_RS06280;Dbxref=Genbank:WP_230428143.1;Name=WP_230428143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087600.1;locus_tag=LPH39_RS06280;product=hypothetical protein;protein_id=WP_230428143.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1558789 1560264 . - . ID=gene-LPH39_RS06285;Name=LPH39_RS06285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06285;old_locus_tag=LPH39_06285 NZ_CP087677.1 Protein Homology CDS 1558789 1560264 . - 0 ID=cds-WP_038272389.1;Parent=gene-LPH39_RS06285;Dbxref=Genbank:WP_038272389.1;Name=WP_038272389.1;Ontology_term=GO:0019538,GO:0070006;gbkey=CDS;go_function=metalloaminopeptidase activity|0070006||IEA;go_process=protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087599.1;locus_tag=LPH39_RS06285;product=leucyl aminopeptidase;protein_id=WP_038272389.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1560374 1561456 . + . ID=gene-LPH39_RS06290;Name=lptF;gbkey=Gene;gene=lptF;gene_biotype=protein_coding;locus_tag=LPH39_RS06290;old_locus_tag=LPH39_06290 NZ_CP087677.1 Protein Homology CDS 1560374 1561456 . + 0 ID=cds-WP_038272386.1;Parent=gene-LPH39_RS06290;Dbxref=Genbank:WP_038272386.1;Name=WP_038272386.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptF;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852559.1;locus_tag=LPH39_RS06290;product=LPS export ABC transporter permease LptF;protein_id=WP_038272386.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1561453 1562562 . + . ID=gene-LPH39_RS06295;Name=lptG;gbkey=Gene;gene=lptG;gene_biotype=protein_coding;locus_tag=LPH39_RS06295;old_locus_tag=LPH39_06295 NZ_CP087677.1 Protein Homology CDS 1561453 1562562 . + 0 ID=cds-WP_038272383.1;Parent=gene-LPH39_RS06295;Dbxref=Genbank:WP_038272383.1;Name=WP_038272383.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptG;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085518.1;locus_tag=LPH39_RS06295;product=LPS export ABC transporter permease LptG;protein_id=WP_038272383.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1562765 1563034 . - . ID=gene-LPH39_RS06300;Name=LPH39_RS06300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06300;old_locus_tag=LPH39_06300 NZ_CP087677.1 GeneMarkS-2+ CDS 1562765 1563034 . - 0 ID=cds-WP_152536655.1;Parent=gene-LPH39_RS06300;Dbxref=Genbank:WP_152536655.1;Name=WP_152536655.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06300;product=hypothetical protein;protein_id=WP_152536655.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1563885 1565714 . + . ID=gene-LPH39_RS06305;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=LPH39_RS06305;old_locus_tag=LPH39_06305 NZ_CP087677.1 Protein Homology CDS 1563885 1565714 . + 0 ID=cds-WP_038272409.1;Parent=gene-LPH39_RS06305;Dbxref=Genbank:WP_038272409.1;Name=WP_038272409.1;Ontology_term=GO:0006040,GO:0009252,GO:0004360;gbkey=CDS;gene=glmS;go_function=glutamine-fructose-6-phosphate transaminase (isomerizing) activity|0004360||IEA;go_process=amino sugar metabolic process|0006040||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159863.1;locus_tag=LPH39_RS06305;product=glutamine--fructose-6-phosphate transaminase (isomerizing);protein_id=WP_038272409.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1565908 1566549 . - . ID=gene-LPH39_RS06310;Name=LPH39_RS06310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06310;old_locus_tag=LPH39_06310 NZ_CP087677.1 Protein Homology CDS 1565908 1566549 . - 0 ID=cds-WP_038272377.1;Parent=gene-LPH39_RS06310;Dbxref=Genbank:WP_038272377.1;Name=WP_038272377.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016207.2;locus_tag=LPH39_RS06310;product=FMN-binding negative transcriptional regulator;protein_id=WP_038272377.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1566931 1567278 . - . ID=gene-LPH39_RS06315;Name=LPH39_RS06315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06315;old_locus_tag=LPH39_06315 NZ_CP087677.1 GeneMarkS-2+ CDS 1566931 1567278 . - 0 ID=cds-WP_038272374.1;Parent=gene-LPH39_RS06315;Dbxref=Genbank:WP_038272374.1;Name=WP_038272374.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06315;product=hypothetical protein;protein_id=WP_038272374.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1567732 1568589 . - . ID=gene-LPH39_RS06320;Name=speE;gbkey=Gene;gene=speE;gene_biotype=protein_coding;locus_tag=LPH39_RS06320;old_locus_tag=LPH39_06320 NZ_CP087677.1 Protein Homology CDS 1567732 1568589 . - 0 ID=cds-WP_038272371.1;Parent=gene-LPH39_RS06320;Dbxref=Genbank:WP_038272371.1;Name=WP_038272371.1;gbkey=CDS;gene=speE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305070.1;locus_tag=LPH39_RS06320;product=polyamine aminopropyltransferase;protein_id=WP_038272371.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1568808 1570694 . + . ID=gene-LPH39_RS06325;Name=speA;gbkey=Gene;gene=speA;gene_biotype=protein_coding;locus_tag=LPH39_RS06325;old_locus_tag=LPH39_06325 NZ_CP087677.1 Protein Homology CDS 1568808 1570694 . + 0 ID=cds-WP_038272368.1;Parent=gene-LPH39_RS06325;Dbxref=Genbank:WP_038272368.1;Name=WP_038272368.1;Ontology_term=GO:0008295,GO:0008792;gbkey=CDS;gene=speA;go_function=arginine decarboxylase activity|0008792||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892689.1;locus_tag=LPH39_RS06325;product=arginine decarboxylase;protein_id=WP_038272368.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1571131 1571886 . - . ID=gene-LPH39_RS06330;Name=LPH39_RS06330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06330;old_locus_tag=LPH39_06330 NZ_CP087677.1 Protein Homology CDS 1571131 1571886 . - 0 ID=cds-WP_038272367.1;Parent=gene-LPH39_RS06330;Dbxref=Genbank:WP_038272367.1;Name=WP_038272367.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995556.1;locus_tag=LPH39_RS06330;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_038272367.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1571982 1572779 . - . ID=gene-LPH39_RS06335;Name=LPH39_RS06335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06335;old_locus_tag=LPH39_06335 NZ_CP087677.1 Protein Homology CDS 1571982 1572779 . - 0 ID=cds-WP_038272365.1;Parent=gene-LPH39_RS06335;Dbxref=Genbank:WP_038272365.1;Name=WP_038272365.1;Ontology_term=GO:0042834;gbkey=CDS;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085513.1;locus_tag=LPH39_RS06335;product=SPOR domain-containing protein;protein_id=WP_038272365.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1572819 1574507 . - . ID=gene-LPH39_RS06340;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=LPH39_RS06340;old_locus_tag=LPH39_06340 NZ_CP087677.1 Protein Homology CDS 1572819 1574507 . - 0 ID=cds-WP_038272360.1;Parent=gene-LPH39_RS06340;Dbxref=Genbank:WP_038272360.1;Name=WP_038272360.1;Ontology_term=GO:0006420,GO:0004814,GO:0005737;gbkey=CDS;gene=argS;go_component=cytoplasm|0005737||IEA;go_function=arginine-tRNA ligase activity|0004814||IEA;go_process=arginyl-tRNA aminoacylation|0006420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300787.1;locus_tag=LPH39_RS06340;product=arginine--tRNA ligase;protein_id=WP_038272360.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1574634 1575308 . - . ID=gene-LPH39_RS06345;Name=radC;gbkey=Gene;gene=radC;gene_biotype=protein_coding;locus_tag=LPH39_RS06345;old_locus_tag=LPH39_06345 NZ_CP087677.1 Protein Homology CDS 1574634 1575308 . - 0 ID=cds-WP_038272357.1;Parent=gene-LPH39_RS06345;Dbxref=Genbank:WP_038272357.1;Name=WP_038272357.1;Ontology_term=GO:0006281,GO:0003677;gbkey=CDS;gene=radC;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097508.1;locus_tag=LPH39_RS06345;product=DNA repair protein RadC;protein_id=WP_038272357.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1575406 1576635 . + . ID=gene-LPH39_RS06350;Name=coaBC;gbkey=Gene;gene=coaBC;gene_biotype=protein_coding;locus_tag=LPH39_RS06350;old_locus_tag=LPH39_06350 NZ_CP087677.1 Protein Homology CDS 1575406 1576635 . + 0 ID=cds-WP_038272355.1;Parent=gene-LPH39_RS06350;Dbxref=Genbank:WP_038272355.1;Name=WP_038272355.1;Ontology_term=GO:0015937,GO:0015939,GO:0004632,GO:0004633;gbkey=CDS;gene=coaBC;go_function=phosphopantothenate--cysteine ligase activity|0004632||IEA,phosphopantothenoylcysteine decarboxylase activity|0004633||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA,pantothenate metabolic process|0015939||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964144.1;locus_tag=LPH39_RS06350;product=bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC;protein_id=WP_038272355.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1576632 1577099 . + . ID=gene-LPH39_RS06355;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;locus_tag=LPH39_RS06355;old_locus_tag=LPH39_06355 NZ_CP087677.1 Protein Homology CDS 1576632 1577099 . + 0 ID=cds-WP_038272353.1;Parent=gene-LPH39_RS06355;Dbxref=Genbank:WP_038272353.1;Name=WP_038272353.1;Ontology_term=GO:0006226,GO:0046081,GO:0000287,GO:0004170;gbkey=CDS;gene=dut;go_function=magnesium ion binding|0000287||IEA,dUTP diphosphatase activity|0004170||IEA;go_process=dUMP biosynthetic process|0006226||IEA,dUTP catabolic process|0046081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087579.1;locus_tag=LPH39_RS06355;product=dUTP diphosphatase;protein_id=WP_038272353.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1577113 1579473 . + . ID=gene-LPH39_RS06360;Name=LPH39_RS06360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06360;old_locus_tag=LPH39_06360 NZ_CP087677.1 Protein Homology CDS 1577113 1579473 . + 0 ID=cds-WP_038272350.1;Parent=gene-LPH39_RS06360;Dbxref=Genbank:WP_038272350.1;Name=WP_038272350.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085508.1;locus_tag=LPH39_RS06360;product=phosphomannomutase/phosphoglucomutase;protein_id=WP_038272350.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1579480 1580166 . - . ID=gene-LPH39_RS06365;Name=LPH39_RS06365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06365;old_locus_tag=LPH39_06365 NZ_CP087677.1 Protein Homology CDS 1579480 1580166 . - 0 ID=cds-WP_038272347.1;Parent=gene-LPH39_RS06365;Dbxref=Genbank:WP_038272347.1;Name=WP_038272347.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085507.1;locus_tag=LPH39_RS06365;product=hypothetical protein;protein_id=WP_038272347.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1580190 1580849 . - . ID=gene-LPH39_RS06370;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=LPH39_RS06370;old_locus_tag=LPH39_06370 NZ_CP087677.1 Protein Homology CDS 1580190 1580849 . - 0 ID=cds-WP_038272344.1;Parent=gene-LPH39_RS06370;Dbxref=Genbank:WP_038272344.1;Name=WP_038272344.1;Ontology_term=GO:0009220,GO:0004588;gbkey=CDS;gene=pyrE;go_function=orotate phosphoribosyltransferase activity|0004588||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374714.1;locus_tag=LPH39_RS06370;product=orotate phosphoribosyltransferase;protein_id=WP_038272344.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1581423 1582232 . + . ID=gene-LPH39_RS06375;Name=LPH39_RS06375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06375;old_locus_tag=LPH39_06375 NZ_CP087677.1 Protein Homology CDS 1581423 1582232 . + 0 ID=cds-WP_038272342.1;Parent=gene-LPH39_RS06375;Dbxref=Genbank:WP_038272342.1;Name=WP_038272342.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085505.1;locus_tag=LPH39_RS06375;product=DUF3289 family protein;protein_id=WP_038272342.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1582535 1583350 . - . ID=gene-LPH39_RS06380;Name=LPH39_RS06380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06380;old_locus_tag=LPH39_06380 NZ_CP087677.1 Protein Homology CDS 1582535 1583350 . - 0 ID=cds-WP_038272339.1;Parent=gene-LPH39_RS06380;Dbxref=Genbank:WP_038272339.1;Name=WP_038272339.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892701.1;locus_tag=LPH39_RS06380;product=C39 family peptidase;protein_id=WP_038272339.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1584839 1585672 . + . ID=gene-LPH39_RS06385;Name=LPH39_RS06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06385;old_locus_tag=LPH39_06385 NZ_CP087677.1 Protein Homology CDS 1584839 1585672 . + 0 ID=cds-WP_230428145.1;Parent=gene-LPH39_RS06385;Dbxref=Genbank:WP_230428145.1;Name=WP_230428145.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085503.1;locus_tag=LPH39_RS06385;product=restriction endonuclease;protein_id=WP_230428145.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1585656 1585925 . + . ID=gene-LPH39_RS06390;Name=LPH39_RS06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06390;old_locus_tag=LPH39_06390 NZ_CP087677.1 Protein Homology CDS 1585656 1585925 . + 0 ID=cds-WP_038272337.1;Parent=gene-LPH39_RS06390;Dbxref=Genbank:WP_038272337.1;Name=WP_038272337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852674.1;locus_tag=LPH39_RS06390;product=hypothetical protein;protein_id=WP_038272337.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1586238 1586600 . + . ID=gene-LPH39_RS06395;Name=LPH39_RS06395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06395;old_locus_tag=LPH39_06395 NZ_CP087677.1 GeneMarkS-2+ CDS 1586238 1586600 . + 0 ID=cds-WP_230428146.1;Parent=gene-LPH39_RS06395;Dbxref=Genbank:WP_230428146.1;Name=WP_230428146.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06395;product=hypothetical protein;protein_id=WP_230428146.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1586730 1587686 . + . ID=gene-LPH39_RS06400;Name=LPH39_RS06400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06400;old_locus_tag=LPH39_06400 NZ_CP087677.1 Protein Homology CDS 1586730 1587686 . + 0 ID=cds-WP_230428147.1;Parent=gene-LPH39_RS06400;Dbxref=Genbank:WP_230428147.1;Name=WP_230428147.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021594.2;locus_tag=LPH39_RS06400;product=DUF2326 domain-containing protein;protein_id=WP_230428147.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1588398 1588550 . + . ID=gene-LPH39_RS06405;Name=LPH39_RS06405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06405;old_locus_tag=LPH39_06405 NZ_CP087677.1 GeneMarkS-2+ CDS 1588398 1588550 . + 0 ID=cds-WP_171898038.1;Parent=gene-LPH39_RS06405;Dbxref=Genbank:WP_171898038.1;Name=WP_171898038.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06405;product=hypothetical protein;protein_id=WP_171898038.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1588646 1588801 . + . ID=gene-LPH39_RS06410;Name=LPH39_RS06410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06410;old_locus_tag=LPH39_06410 NZ_CP087677.1 GeneMarkS-2+ CDS 1588646 1588801 . + 0 ID=cds-WP_230428148.1;Parent=gene-LPH39_RS06410;Dbxref=Genbank:WP_230428148.1;Name=WP_230428148.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06410;product=hypothetical protein;protein_id=WP_230428148.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1589344 1589679 . - . ID=gene-LPH39_RS06415;Name=LPH39_RS06415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06415;old_locus_tag=LPH39_06415 NZ_CP087677.1 GeneMarkS-2+ CDS 1589344 1589679 . - 0 ID=cds-WP_152536654.1;Parent=gene-LPH39_RS06415;Dbxref=Genbank:WP_152536654.1;Name=WP_152536654.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06415;product=hypothetical protein;protein_id=WP_152536654.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1590305 1591105 . + . ID=gene-LPH39_RS06420;Name=LPH39_RS06420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06420;old_locus_tag=LPH39_06420 NZ_CP087677.1 Protein Homology CDS 1590305 1591105 . + 0 ID=cds-WP_038272332.1;Parent=gene-LPH39_RS06420;Dbxref=Genbank:WP_038272332.1;Name=WP_038272332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852672.1;locus_tag=LPH39_RS06420;product=exodeoxyribonuclease III;protein_id=WP_038272332.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1591102 1592631 . + . ID=gene-LPH39_RS06425;Name=LPH39_RS06425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06425;old_locus_tag=LPH39_06425 NZ_CP087677.1 Protein Homology CDS 1591102 1592631 . + 0 ID=cds-WP_038272331.1;Parent=gene-LPH39_RS06425;Dbxref=Genbank:WP_038272331.1;Name=WP_038272331.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852671.1;locus_tag=LPH39_RS06425;product=MFS transporter;protein_id=WP_038272331.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1592784 1593917 . - . ID=gene-LPH39_RS06430;Name=LPH39_RS06430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06430;old_locus_tag=LPH39_06430 NZ_CP087677.1 Protein Homology CDS 1592784 1593917 . - 0 ID=cds-WP_038272403.1;Parent=gene-LPH39_RS06430;Dbxref=Genbank:WP_038272403.1;Name=WP_038272403.1;Ontology_term=GO:0006040,GO:0009254,GO:0005524,GO:0016773;gbkey=CDS;go_function=ATP binding|0005524||IEA,phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;go_process=amino sugar metabolic process|0006040||IEA,peptidoglycan turnover|0009254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348848.1;locus_tag=LPH39_RS06430;product=anhydro-N-acetylmuramic acid kinase;protein_id=WP_038272403.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1594005 1595417 . - . ID=gene-LPH39_RS06435;Name=LPH39_RS06435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06435;old_locus_tag=LPH39_06435 NZ_CP087677.1 Protein Homology CDS 1594005 1595417 . - 0 ID=cds-WP_038272330.1;Parent=gene-LPH39_RS06435;Dbxref=Genbank:WP_038272330.1;Name=WP_038272330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337570.1;locus_tag=LPH39_RS06435;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=WP_038272330.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1595594 1596814 . + . ID=gene-LPH39_RS06440;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=LPH39_RS06440;old_locus_tag=LPH39_06440 NZ_CP087677.1 Protein Homology CDS 1595594 1596814 . + 0 ID=cds-WP_038272327.1;Parent=gene-LPH39_RS06440;Dbxref=Genbank:WP_038272327.1;Name=WP_038272327.1;Ontology_term=GO:0006437,GO:0004831,GO:0005737;gbkey=CDS;gene=tyrS;go_component=cytoplasm|0005737||IEA;go_function=tyrosine-tRNA ligase activity|0004831||IEA;go_process=tyrosyl-tRNA aminoacylation|0006437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087787.1;locus_tag=LPH39_RS06440;product=tyrosine--tRNA ligase;protein_id=WP_038272327.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1597594 1599138 . + . ID=gene-LPH39_RS06445;Name=LPH39_RS06445;gbkey=Gene;gene_biotype=rRNA;locus_tag=LPH39_RS06445;old_locus_tag=LPH39_06445 NZ_CP087677.1 cmsearch rRNA 1597594 1599138 . + . ID=rna-LPH39_RS06445;Parent=gene-LPH39_RS06445;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS06445;product=16S ribosomal RNA NZ_CP087677.1 cmsearch exon 1597594 1599138 . + . ID=exon-LPH39_RS06445-1;Parent=rna-LPH39_RS06445;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS06445;product=16S ribosomal RNA NZ_CP087677.1 RefSeq gene 1599233 1599308 . + . ID=gene-LPH39_RS06450;Name=LPH39_RS06450;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS06450;old_locus_tag=LPH39_06450 NZ_CP087677.1 tRNAscan-SE tRNA 1599233 1599308 . + . ID=rna-LPH39_RS06450;Parent=gene-LPH39_RS06450;anticodon=(pos:1599266..1599268);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06450;product=tRNA-Ala NZ_CP087677.1 tRNAscan-SE exon 1599233 1599308 . + . ID=exon-LPH39_RS06450-1;Parent=rna-LPH39_RS06450;anticodon=(pos:1599266..1599268);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06450;product=tRNA-Ala NZ_CP087677.1 RefSeq gene 1599320 1599396 . + . ID=gene-LPH39_RS06455;Name=LPH39_RS06455;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS06455;old_locus_tag=LPH39_06455 NZ_CP087677.1 tRNAscan-SE tRNA 1599320 1599396 . + . ID=rna-LPH39_RS06455;Parent=gene-LPH39_RS06455;anticodon=(pos:1599354..1599356);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06455;product=tRNA-Ile NZ_CP087677.1 tRNAscan-SE exon 1599320 1599396 . + . ID=exon-LPH39_RS06455-1;Parent=rna-LPH39_RS06455;anticodon=(pos:1599354..1599356);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06455;product=tRNA-Ile NZ_CP087677.1 RefSeq gene 1599615 1602493 . + . ID=gene-LPH39_RS06460;Name=LPH39_RS06460;gbkey=Gene;gene_biotype=rRNA;locus_tag=LPH39_RS06460;old_locus_tag=LPH39_06460 NZ_CP087677.1 cmsearch rRNA 1599615 1602493 . + . ID=rna-LPH39_RS06460;Parent=gene-LPH39_RS06460;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS06460;product=23S ribosomal RNA NZ_CP087677.1 cmsearch exon 1599615 1602493 . + . ID=exon-LPH39_RS06460-1;Parent=rna-LPH39_RS06460;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS06460;product=23S ribosomal RNA NZ_CP087677.1 RefSeq gene 1602624 1602737 . + . ID=gene-LPH39_RS06465;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=LPH39_RS06465;old_locus_tag=LPH39_06465 NZ_CP087677.1 cmsearch rRNA 1602624 1602737 . + . ID=rna-LPH39_RS06465;Parent=gene-LPH39_RS06465;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS06465;product=5S ribosomal RNA NZ_CP087677.1 cmsearch exon 1602624 1602737 . + . ID=exon-LPH39_RS06465-1;Parent=rna-LPH39_RS06465;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS06465;product=5S ribosomal RNA NZ_CP087677.1 RefSeq gene 1602888 1603703 . + . ID=gene-LPH39_RS06470;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=LPH39_RS06470;old_locus_tag=LPH39_06470 NZ_CP087677.1 Protein Homology CDS 1602888 1603703 . + 0 ID=cds-WP_038273054.1-2;Parent=gene-LPH39_RS06470;Dbxref=Genbank:WP_038273054.1;Name=WP_038273054.1;Ontology_term=GO:0006281,GO:0006284,GO:0003676,GO:0003684,GO:0003906,GO:0008270,GO:0008534,GO:0016799,GO:0019104;gbkey=CDS;gene=mutM;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA,zinc ion binding|0008270||IEA,oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA,DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA,base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085054.1;locus_tag=LPH39_RS06470;product=bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase;protein_id=WP_038273054.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1603806 1604570 . - . ID=gene-LPH39_RS06475;Name=ccsA;gbkey=Gene;gene=ccsA;gene_biotype=protein_coding;locus_tag=LPH39_RS06475;old_locus_tag=LPH39_06475 NZ_CP087677.1 Protein Homology CDS 1603806 1604570 . - 0 ID=cds-WP_038273056.1-2;Parent=gene-LPH39_RS06475;Dbxref=Genbank:WP_038273056.1;Name=WP_038273056.1;Ontology_term=GO:0017004,GO:0020037;gbkey=CDS;gene=ccsA;go_function=heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085053.1;locus_tag=LPH39_RS06475;product=cytochrome c biogenesis protein CcsA;protein_id=WP_038273056.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1605137 1607014 . + . ID=gene-LPH39_RS06480;Name=LPH39_RS06480;end_range=1607014,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS06480;old_locus_tag=LPH39_06480;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1605137 1607014 . + 0 ID=cds-LPH39_RS06480;Parent=gene-LPH39_RS06480;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1607014,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087191.1;locus_tag=LPH39_RS06480;partial=true;product=DUF885 family protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1608078 1608302 . - . ID=gene-LPH39_RS06485;Name=LPH39_RS06485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06485;old_locus_tag=LPH39_06485 NZ_CP087677.1 GeneMarkS-2+ CDS 1608078 1608302 . - 0 ID=cds-WP_162814079.1;Parent=gene-LPH39_RS06485;Dbxref=Genbank:WP_162814079.1;Name=WP_162814079.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06485;product=hypothetical protein;protein_id=WP_162814079.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1608630 1608797 . + . ID=gene-LPH39_RS06490;Name=LPH39_RS06490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06490;old_locus_tag=LPH39_06490 NZ_CP087677.1 GeneMarkS-2+ CDS 1608630 1608797 . + 0 ID=cds-WP_160165163.1;Parent=gene-LPH39_RS06490;Dbxref=Genbank:WP_160165163.1;Name=WP_160165163.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06490;product=hypothetical protein;protein_id=WP_160165163.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1610674 1611414 . - . ID=gene-LPH39_RS06495;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=LPH39_RS06495;old_locus_tag=LPH39_06495 NZ_CP087677.1 Protein Homology CDS 1610674 1611414 . - 0 ID=cds-WP_038271021.1;Parent=gene-LPH39_RS06495;Dbxref=Genbank:WP_038271021.1;Name=WP_038271021.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fabG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017909512.1;locus_tag=LPH39_RS06495;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_038271021.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1613314 1614918 . + . ID=gene-LPH39_RS06500;Name=LPH39_RS06500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06500;old_locus_tag=LPH39_06500 NZ_CP087677.1 Protein Homology CDS 1613314 1614918 . + 0 ID=cds-WP_038271116.1;Parent=gene-LPH39_RS06500;Dbxref=Genbank:WP_038271116.1;Name=WP_038271116.1;Ontology_term=GO:0006415,GO:0003924;gbkey=CDS;go_function=GTPase activity|0003924||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085050.1;locus_tag=LPH39_RS06500;product=peptide chain release factor 3;protein_id=WP_038271116.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1614999 1615643 . + . ID=gene-LPH39_RS06505;Name=LPH39_RS06505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06505;old_locus_tag=LPH39_06505 NZ_CP087677.1 Protein Homology CDS 1614999 1615643 . + 0 ID=cds-WP_038271024.1;Parent=gene-LPH39_RS06505;Dbxref=Genbank:WP_038271024.1;Name=WP_038271024.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301897.1;locus_tag=LPH39_RS06505;product=hemolysin III family protein;protein_id=WP_038271024.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1616362 1617375 . - . ID=gene-LPH39_RS06510;Name=LPH39_RS06510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06510;old_locus_tag=LPH39_06510 NZ_CP087677.1 Protein Homology CDS 1616362 1617375 . - 0 ID=cds-WP_038271025.1;Parent=gene-LPH39_RS06510;Dbxref=Genbank:WP_038271025.1;Name=WP_038271025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097517.1;locus_tag=LPH39_RS06510;product=glycosyltransferase family 2 protein;protein_id=WP_038271025.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1618554 1619336 . - . ID=gene-LPH39_RS06515;Name=LPH39_RS06515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06515;old_locus_tag=LPH39_06515 NZ_CP087677.1 Protein Homology CDS 1618554 1619336 . - 0 ID=cds-WP_038271027.1;Parent=gene-LPH39_RS06515;Dbxref=Genbank:WP_038271027.1;Name=WP_038271027.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087182.1;locus_tag=LPH39_RS06515;product=TatD family hydrolase;protein_id=WP_038271027.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1619674 1620444 . + . ID=gene-LPH39_RS06520;Name=LPH39_RS06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06520;old_locus_tag=LPH39_06520 NZ_CP087677.1 Protein Homology CDS 1619674 1620444 . + 0 ID=cds-WP_038271029.1;Parent=gene-LPH39_RS06520;Dbxref=Genbank:WP_038271029.1;Name=WP_038271029.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087181.1;locus_tag=LPH39_RS06520;product=glycine zipper 2TM domain-containing protein;protein_id=WP_038271029.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1621920 1622312 . - . ID=gene-LPH39_RS06525;Name=LPH39_RS06525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06525;old_locus_tag=LPH39_06525 NZ_CP087677.1 Protein Homology CDS 1621920 1622312 . - 0 ID=cds-WP_038271030.1;Parent=gene-LPH39_RS06525;Dbxref=Genbank:WP_038271030.1;Name=WP_038271030.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005933739.1;locus_tag=LPH39_RS06525;product=hypothetical protein;protein_id=WP_038271030.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1623667 1624062 . - . ID=gene-LPH39_RS06530;Name=gcvH;gbkey=Gene;gene=gcvH;gene_biotype=protein_coding;locus_tag=LPH39_RS06530;old_locus_tag=LPH39_06530 NZ_CP087677.1 Protein Homology CDS 1623667 1624062 . - 0 ID=cds-WP_038271031.1;Parent=gene-LPH39_RS06530;Dbxref=Genbank:WP_038271031.1;Name=WP_038271031.1;Ontology_term=GO:0019464,GO:0003824;gbkey=CDS;gene=gcvH;go_function=catalytic activity|0003824||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087179.1;locus_tag=LPH39_RS06530;product=glycine cleavage system protein GcvH;protein_id=WP_038271031.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1624829 1625935 . - . ID=gene-LPH39_RS06535;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=LPH39_RS06535;old_locus_tag=LPH39_06535 NZ_CP087677.1 Protein Homology CDS 1624829 1625935 . - 0 ID=cds-WP_038271032.1;Parent=gene-LPH39_RS06535;Dbxref=Genbank:WP_038271032.1;Name=WP_038271032.1;Ontology_term=GO:0019464,GO:0004047,GO:0005737;gbkey=CDS;gene=gcvT;go_component=cytoplasm|0005737||IEA;go_function=aminomethyltransferase activity|0004047||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851419.1;locus_tag=LPH39_RS06535;product=glycine cleavage system aminomethyltransferase GcvT;protein_id=WP_038271032.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1626088 1626525 . - . ID=gene-LPH39_RS06540;Name=LPH39_RS06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06540;old_locus_tag=LPH39_06540 NZ_CP087677.1 Protein Homology CDS 1626088 1626525 . - 0 ID=cds-WP_038271033.1;Parent=gene-LPH39_RS06540;Dbxref=Genbank:WP_038271033.1;Name=WP_038271033.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010343187.1;locus_tag=LPH39_RS06540;product=NfeD family protein;protein_id=WP_038271033.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1626529 1627485 . - . ID=gene-LPH39_RS06545;Name=LPH39_RS06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06545;old_locus_tag=LPH39_06545 NZ_CP087677.1 Protein Homology CDS 1626529 1627485 . - 0 ID=cds-WP_038271034.1;Parent=gene-LPH39_RS06545;Dbxref=Genbank:WP_038271034.1;Name=WP_038271034.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087172.1;locus_tag=LPH39_RS06545;product=SPFH/Band 7/PHB domain protein;protein_id=WP_038271034.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1628168 1629001 . - . ID=gene-LPH39_RS06550;Name=mazG;gbkey=Gene;gene=mazG;gene_biotype=protein_coding;locus_tag=LPH39_RS06550;old_locus_tag=LPH39_06550 NZ_CP087677.1 Protein Homology CDS 1628168 1629001 . - 0 ID=cds-WP_038271035.1;Parent=gene-LPH39_RS06550;Dbxref=Genbank:WP_038271035.1;Name=WP_038271035.1;gbkey=CDS;gene=mazG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087170.1;locus_tag=LPH39_RS06550;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_038271035.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1629034 1629834 . - . ID=gene-LPH39_RS06555;Name=cysQ;gbkey=Gene;gene=cysQ;gene_biotype=protein_coding;locus_tag=LPH39_RS06555;old_locus_tag=LPH39_06555 NZ_CP087677.1 Protein Homology CDS 1629034 1629834 . - 0 ID=cds-WP_038271037.1;Parent=gene-LPH39_RS06555;Dbxref=Genbank:WP_038271037.1;Name=WP_038271037.1;Ontology_term=GO:0006790,GO:0008441;gbkey=CDS;gene=cysQ;go_function=3'(2')%2C5'-bisphosphate nucleotidase activity|0008441||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811298.1;locus_tag=LPH39_RS06555;product=3'(2')%2C5'-bisphosphate nucleotidase CysQ;protein_id=WP_038271037.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1629831 1630379 . - . ID=gene-LPH39_RS06560;Name=nudE;gbkey=Gene;gene=nudE;gene_biotype=protein_coding;locus_tag=LPH39_RS06560;old_locus_tag=LPH39_06560 NZ_CP087677.1 Protein Homology CDS 1629831 1630379 . - 0 ID=cds-WP_038271039.1;Parent=gene-LPH39_RS06560;Dbxref=Genbank:WP_038271039.1;Name=WP_038271039.1;Ontology_term=GO:0016787;gbkey=CDS;gene=nudE;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382420.1;locus_tag=LPH39_RS06560;product=ADP compounds hydrolase NudE;protein_id=WP_038271039.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1630448 1631872 . + . ID=gene-LPH39_RS06565;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;locus_tag=LPH39_RS06565;old_locus_tag=LPH39_06565 NZ_CP087677.1 Protein Homology CDS 1630448 1631872 . + 0 ID=cds-WP_038271040.1;Parent=gene-LPH39_RS06565;Dbxref=Genbank:WP_038271040.1;Name=WP_038271040.1;Ontology_term=GO:0009102,GO:0004015;gbkey=CDS;gene=bioA;go_function=adenosylmethionine-8-amino-7-oxononanoate transaminase activity|0004015||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382421.1;locus_tag=LPH39_RS06565;product=adenosylmethionine--8-amino-7-oxononanoate transaminase;protein_id=WP_038271040.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1631863 1632597 . + . ID=gene-LPH39_RS06570;Name=LPH39_RS06570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06570;old_locus_tag=LPH39_06570 NZ_CP087677.1 Protein Homology CDS 1631863 1632597 . + 0 ID=cds-WP_038271042.1;Parent=gene-LPH39_RS06570;Dbxref=Genbank:WP_038271042.1;Name=WP_038271042.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931477.1;locus_tag=LPH39_RS06570;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;protein_id=WP_038271042.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1633607 1633756 . + . ID=gene-LPH39_RS06575;Name=LPH39_RS06575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06575;old_locus_tag=LPH39_06575 NZ_CP087677.1 GeneMarkS-2+ CDS 1633607 1633756 . + 0 ID=cds-WP_160165164.1;Parent=gene-LPH39_RS06575;Dbxref=Genbank:WP_160165164.1;Name=WP_160165164.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06575;product=hypothetical protein;protein_id=WP_160165164.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1634807 1636147 . + . ID=gene-LPH39_RS06580;Name=LPH39_RS06580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06580;old_locus_tag=LPH39_06580 NZ_CP087677.1 Protein Homology CDS 1634807 1636147 . + 0 ID=cds-WP_038271043.1;Parent=gene-LPH39_RS06580;Dbxref=Genbank:WP_038271043.1;Name=WP_038271043.1;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572992.1;locus_tag=LPH39_RS06580;product=DEAD/DEAH box helicase;protein_id=WP_038271043.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1636222 1636575 . + . ID=gene-LPH39_RS06585;Name=queD;gbkey=Gene;gene=queD;gene_biotype=protein_coding;locus_tag=LPH39_RS06585;old_locus_tag=LPH39_06585 NZ_CP087677.1 Protein Homology CDS 1636222 1636575 . + 0 ID=cds-WP_038271045.1;Parent=gene-LPH39_RS06585;Dbxref=Genbank:WP_038271045.1;Name=WP_038271045.1;Ontology_term=GO:0008616,GO:0003824;gbkey=CDS;gene=queD;go_function=catalytic activity|0003824||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572991.1;locus_tag=LPH39_RS06585;product=6-carboxytetrahydropterin synthase QueD;protein_id=WP_038271045.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1638552 1639073 . - . ID=gene-LPH39_RS06590;Name=LPH39_RS06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06590;old_locus_tag=LPH39_06590 NZ_CP087677.1 Protein Homology CDS 1638552 1639073 . - 0 ID=cds-WP_038271117.1;Parent=gene-LPH39_RS06590;Dbxref=Genbank:WP_038271117.1;Name=WP_038271117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572990.1;locus_tag=LPH39_RS06590;product=DUF2059 domain-containing protein;protein_id=WP_038271117.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1639492 1640121 . + . ID=gene-LPH39_RS06595;Name=LPH39_RS06595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06595;old_locus_tag=LPH39_06595 NZ_CP087677.1 Protein Homology CDS 1639492 1640121 . + 0 ID=cds-WP_038271049.1;Parent=gene-LPH39_RS06595;Dbxref=Genbank:WP_038271049.1;Name=WP_038271049.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035483.1;locus_tag=LPH39_RS06595;product=lysophospholipid acyltransferase family protein;protein_id=WP_038271049.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1641242 1641931 . - . ID=gene-LPH39_RS06600;Name=LPH39_RS06600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06600;old_locus_tag=LPH39_06600 NZ_CP087677.1 Protein Homology CDS 1641242 1641931 . - 0 ID=cds-WP_038271051.1;Parent=gene-LPH39_RS06600;Dbxref=Genbank:WP_038271051.1;Name=WP_038271051.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003467120.1;locus_tag=LPH39_RS06600;product=DUF502 domain-containing protein;protein_id=WP_038271051.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1642739 1643329 . - . ID=gene-LPH39_RS06605;Name=LPH39_RS06605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06605;old_locus_tag=LPH39_06605 NZ_CP087677.1 Protein Homology CDS 1642739 1643329 . - 0 ID=cds-WP_038271053.1;Parent=gene-LPH39_RS06605;Dbxref=Genbank:WP_038271053.1;Name=WP_038271053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851431.1;locus_tag=LPH39_RS06605;product=class I SAM-dependent methyltransferase;protein_id=WP_038271053.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1643403 1643855 . + . ID=gene-LPH39_RS06610;Name=LPH39_RS06610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06610;old_locus_tag=LPH39_06610 NZ_CP087677.1 Protein Homology CDS 1643403 1643855 . + 0 ID=cds-WP_038271055.1;Parent=gene-LPH39_RS06610;Dbxref=Genbank:WP_038271055.1;Name=WP_038271055.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902407.1;locus_tag=LPH39_RS06610;product=CopD family protein;protein_id=WP_038271055.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1644022 1644981 . - . ID=gene-LPH39_RS06615;Name=LPH39_RS06615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06615;old_locus_tag=LPH39_06615 NZ_CP087677.1 Protein Homology CDS 1644022 1644981 . - 0 ID=cds-WP_038271056.1;Parent=gene-LPH39_RS06615;Dbxref=Genbank:WP_038271056.1;Name=WP_038271056.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008578271.1;locus_tag=LPH39_RS06615;product=acetyl-CoA carboxylase carboxyltransferase subunit alpha;protein_id=WP_038271056.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1645076 1648657 . - . ID=gene-LPH39_RS06620;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=LPH39_RS06620;old_locus_tag=LPH39_06620 NZ_CP087677.1 Protein Homology CDS 1645076 1648657 . - 0 ID=cds-WP_038271057.1;Parent=gene-LPH39_RS06620;Dbxref=Genbank:WP_038271057.1;Name=WP_038271057.1;Ontology_term=GO:0006260,GO:0003676,GO:0008408;gbkey=CDS;gene=dnaE;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572983.1;locus_tag=LPH39_RS06620;product=DNA polymerase III subunit alpha;protein_id=WP_038271057.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1649156 1650082 . - . ID=gene-LPH39_RS06625;Name=LPH39_RS06625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06625;old_locus_tag=LPH39_06625 NZ_CP087677.1 Protein Homology CDS 1649156 1650082 . - 0 ID=cds-WP_038271058.1;Parent=gene-LPH39_RS06625;Dbxref=Genbank:WP_038271058.1;Name=WP_038271058.1;Ontology_term=GO:0006164,GO:0004639;gbkey=CDS;go_function=phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|0004639||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448471.1;locus_tag=LPH39_RS06625;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=WP_038271058.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1650575 1650904 . + . ID=gene-LPH39_RS06630;Name=LPH39_RS06630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06630;old_locus_tag=LPH39_06630 NZ_CP087677.1 Protein Homology CDS 1650575 1650904 . + 0 ID=cds-WP_038271059.1;Parent=gene-LPH39_RS06630;Dbxref=Genbank:WP_038271059.1;Name=WP_038271059.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157937.1;locus_tag=LPH39_RS06630;product=DnaJ domain-containing protein;protein_id=WP_038271059.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1650954 1651625 . + . ID=gene-LPH39_RS06635;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=LPH39_RS06635;old_locus_tag=LPH39_06635 NZ_CP087677.1 Protein Homology CDS 1650954 1651625 . + 0 ID=cds-WP_038271118.1;Parent=gene-LPH39_RS06635;Dbxref=Genbank:WP_038271118.1;Name=WP_038271118.1;Ontology_term=GO:0006098,GO:0004750;gbkey=CDS;gene=rpe;go_function=D-ribulose-phosphate 3-epimerase activity|0004750||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379428.1;locus_tag=LPH39_RS06635;product=ribulose-phosphate 3-epimerase;protein_id=WP_038271118.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1652738 1653154 . - . ID=gene-LPH39_RS06640;Name=LPH39_RS06640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06640;old_locus_tag=LPH39_06640 NZ_CP087677.1 GeneMarkS-2+ CDS 1652738 1653154 . - 0 ID=cds-WP_114867056.1;Parent=gene-LPH39_RS06640;Dbxref=Genbank:WP_114867056.1;Name=WP_114867056.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06640;product=hypothetical protein;protein_id=WP_114867056.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1654297 1655772 . + . ID=gene-LPH39_RS06645;Name=trpE;gbkey=Gene;gene=trpE;gene_biotype=protein_coding;locus_tag=LPH39_RS06645;old_locus_tag=LPH39_06645 NZ_CP087677.1 Protein Homology CDS 1654297 1655772 . + 0 ID=cds-WP_038271061.1;Parent=gene-LPH39_RS06645;Dbxref=Genbank:WP_038271061.1;Name=WP_038271061.1;Ontology_term=GO:0000162,GO:0004049;gbkey=CDS;gene=trpE;go_function=anthranilate synthase activity|0004049||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575582.1;locus_tag=LPH39_RS06645;product=anthranilate synthase component I;protein_id=WP_038271061.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1655953 1656537 . + . ID=gene-LPH39_RS06650;Name=LPH39_RS06650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06650;old_locus_tag=LPH39_06650 NZ_CP087677.1 Protein Homology CDS 1655953 1656537 . + 0 ID=cds-WP_038271062.1;Parent=gene-LPH39_RS06650;Dbxref=Genbank:WP_038271062.1;Name=WP_038271062.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892752.1;locus_tag=LPH39_RS06650;product=aminodeoxychorismate/anthranilate synthase component II;protein_id=WP_038271062.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1656604 1657638 . + . ID=gene-LPH39_RS06655;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;locus_tag=LPH39_RS06655;old_locus_tag=LPH39_06655 NZ_CP087677.1 Protein Homology CDS 1656604 1657638 . + 0 ID=cds-WP_038271063.1;Parent=gene-LPH39_RS06655;Dbxref=Genbank:WP_038271063.1;Name=WP_038271063.1;Ontology_term=GO:0000162,GO:0004048;gbkey=CDS;gene=trpD;go_function=anthranilate phosphoribosyltransferase activity|0004048||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572976.1;locus_tag=LPH39_RS06655;product=anthranilate phosphoribosyltransferase;protein_id=WP_038271063.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1657715 1658509 . + . ID=gene-LPH39_RS06660;Name=trpC;gbkey=Gene;gene=trpC;gene_biotype=protein_coding;locus_tag=LPH39_RS06660;old_locus_tag=LPH39_06660 NZ_CP087677.1 Protein Homology CDS 1657715 1658509 . + 0 ID=cds-WP_038271064.1;Parent=gene-LPH39_RS06660;Dbxref=Genbank:WP_038271064.1;Name=WP_038271064.1;Ontology_term=GO:0006568,GO:0004425;gbkey=CDS;gene=trpC;go_function=indole-3-glycerol-phosphate synthase activity|0004425||IEA;go_process=tryptophan metabolic process|0006568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003470238.1;locus_tag=LPH39_RS06660;product=indole-3-glycerol phosphate synthase TrpC;protein_id=WP_038271064.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1658506 1659222 . + . ID=gene-LPH39_RS06665;Name=LPH39_RS06665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06665;old_locus_tag=LPH39_06665 NZ_CP087677.1 Protein Homology CDS 1658506 1659222 . + 0 ID=cds-WP_038271065.1;Parent=gene-LPH39_RS06665;Dbxref=Genbank:WP_038271065.1;Name=WP_038271065.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097528.1;locus_tag=LPH39_RS06665;product=haloacid dehalogenase-like hydrolase;protein_id=WP_038271065.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1660265 1660771 . + . ID=gene-LPH39_RS06670;Name=LPH39_RS06670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06670;old_locus_tag=LPH39_06670 NZ_CP087677.1 Protein Homology CDS 1660265 1660771 . + 0 ID=cds-WP_038271119.1;Parent=gene-LPH39_RS06670;Dbxref=Genbank:WP_038271119.1;Name=WP_038271119.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852326.1;locus_tag=LPH39_RS06670;product=MarR family transcriptional regulator;protein_id=WP_038271119.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1661503 1662516 . - . ID=gene-LPH39_RS06675;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=LPH39_RS06675;old_locus_tag=LPH39_06675 NZ_CP087677.1 Protein Homology CDS 1661503 1662516 . - 0 ID=cds-WP_038271066.1;Parent=gene-LPH39_RS06675;Dbxref=Genbank:WP_038271066.1;Name=WP_038271066.1;Ontology_term=GO:0015415,GO:0042301,GO:0009897,GO:0030288,GO:0055052;gbkey=CDS;gene=pstS;go_component=external side of plasma membrane|0009897||IEA,outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA,phosphate ion binding|0042301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017910159.1;locus_tag=LPH39_RS06675;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=WP_038271066.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1662754 1663986 . + . ID=gene-LPH39_RS06680;Name=LPH39_RS06680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06680;old_locus_tag=LPH39_06680 NZ_CP087677.1 Protein Homology CDS 1662754 1663986 . + 0 ID=cds-WP_038271067.1;Parent=gene-LPH39_RS06680;Dbxref=Genbank:WP_038271067.1;Name=WP_038271067.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014646541.1;locus_tag=LPH39_RS06680;product=porin;protein_id=WP_038271067.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1665086 1665161 . - . ID=gene-LPH39_RS06685;Name=LPH39_RS06685;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS06685;old_locus_tag=LPH39_06685 NZ_CP087677.1 tRNAscan-SE tRNA 1665086 1665161 . - . ID=rna-LPH39_RS06685;Parent=gene-LPH39_RS06685;anticodon=(pos:complement(1665126..1665128));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06685;product=tRNA-Ala NZ_CP087677.1 tRNAscan-SE exon 1665086 1665161 . - . ID=exon-LPH39_RS06685-1;Parent=rna-LPH39_RS06685;anticodon=(pos:complement(1665126..1665128));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06685;product=tRNA-Ala NZ_CP087677.1 RefSeq gene 1666419 1666679 . + . ID=gene-LPH39_RS06690;Name=LPH39_RS06690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06690;old_locus_tag=LPH39_06690 NZ_CP087677.1 Protein Homology CDS 1666419 1666679 . + 0 ID=cds-WP_152536604.1;Parent=gene-LPH39_RS06690;Dbxref=Genbank:WP_152536604.1;Name=WP_152536604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382425.1;locus_tag=LPH39_RS06690;product=hypothetical protein;protein_id=WP_152536604.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1666676 1667878 . + . ID=gene-LPH39_RS06695;Name=LPH39_RS06695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06695;old_locus_tag=LPH39_06695 NZ_CP087677.1 Protein Homology CDS 1666676 1667878 . + 0 ID=cds-WP_038271069.1;Parent=gene-LPH39_RS06695;Dbxref=Genbank:WP_038271069.1;Name=WP_038271069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086294.1;locus_tag=LPH39_RS06695;product=Xaa-Pro peptidase family protein;protein_id=WP_038271069.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1668066 1669889 . + . ID=gene-LPH39_RS06700;Name=LPH39_RS06700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06700;old_locus_tag=LPH39_06700 NZ_CP087677.1 Protein Homology CDS 1668066 1669889 . + 0 ID=cds-WP_038271070.1;Parent=gene-LPH39_RS06700;Dbxref=Genbank:WP_038271070.1;Name=WP_038271070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920338.1;locus_tag=LPH39_RS06700;product=DUF885 family protein;protein_id=WP_038271070.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1669886 1670017 . + . ID=gene-LPH39_RS12025;Name=LPH39_RS12025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12025 NZ_CP087677.1 GeneMarkS-2+ CDS 1669886 1670017 . + 0 ID=cds-WP_267903165.1;Parent=gene-LPH39_RS12025;Dbxref=Genbank:WP_267903165.1;Name=WP_267903165.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12025;product=hypothetical protein;protein_id=WP_267903165.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1670078 1670903 . + . ID=gene-LPH39_RS06705;Name=LPH39_RS06705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS06705;old_locus_tag=LPH39_06705;pseudo=true NZ_CP087677.1 Protein Homology CDS 1670078 1670903 . + 0 ID=cds-LPH39_RS06705;Parent=gene-LPH39_RS06705;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892763.1;locus_tag=LPH39_RS06705;product=DUF885 family protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1671352 1672494 . + . ID=gene-LPH39_RS06710;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=LPH39_RS06710;old_locus_tag=LPH39_06710 NZ_CP087677.1 Protein Homology CDS 1671352 1672494 . + 0 ID=cds-WP_038271073.1;Parent=gene-LPH39_RS06710;Dbxref=Genbank:WP_038271073.1;Name=WP_038271073.1;Ontology_term=GO:0006400,GO:0008479,GO:0005737;gbkey=CDS;gene=tgt;go_component=cytoplasm|0005737||IEA;go_function=queuine tRNA-ribosyltransferase activity|0008479||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086289.1;locus_tag=LPH39_RS06710;product=tRNA guanosine(34) transglycosylase Tgt;protein_id=WP_038271073.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1672617 1672967 . + . ID=gene-LPH39_RS06715;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=LPH39_RS06715;old_locus_tag=LPH39_06715 NZ_CP087677.1 Protein Homology CDS 1672617 1672967 . + 0 ID=cds-WP_038271074.1;Parent=gene-LPH39_RS06715;Dbxref=Genbank:WP_038271074.1;Name=WP_038271074.1;Ontology_term=GO:0009306,GO:0015450,GO:0005886;gbkey=CDS;gene=yajC;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014036867.1;locus_tag=LPH39_RS06715;product=preprotein translocase subunit YajC;protein_id=WP_038271074.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1673034 1674878 . + . ID=gene-LPH39_RS06720;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=LPH39_RS06720;old_locus_tag=LPH39_06720 NZ_CP087677.1 Protein Homology CDS 1673034 1674878 . + 0 ID=cds-WP_038271120.1;Parent=gene-LPH39_RS06720;Dbxref=Genbank:WP_038271120.1;Name=WP_038271120.1;Ontology_term=GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secD;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917104.1;locus_tag=LPH39_RS06720;product=protein translocase subunit SecD;protein_id=WP_038271120.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1674898 1675863 . + . ID=gene-LPH39_RS06725;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=LPH39_RS06725;old_locus_tag=LPH39_06725 NZ_CP087677.1 Protein Homology CDS 1674898 1675863 . + 0 ID=cds-WP_038271076.1;Parent=gene-LPH39_RS06725;Dbxref=Genbank:WP_038271076.1;Name=WP_038271076.1;Ontology_term=GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secF;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438079.1;locus_tag=LPH39_RS06725;product=protein translocase subunit SecF;protein_id=WP_038271076.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1676024 1676098 . - . ID=gene-LPH39_RS06730;Name=LPH39_RS06730;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS06730;old_locus_tag=LPH39_06730 NZ_CP087677.1 tRNAscan-SE tRNA 1676024 1676098 . - . ID=rna-LPH39_RS06730;Parent=gene-LPH39_RS06730;anticodon=(pos:complement(1676063..1676065));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06730;product=tRNA-Glu NZ_CP087677.1 tRNAscan-SE exon 1676024 1676098 . - . ID=exon-LPH39_RS06730-1;Parent=rna-LPH39_RS06730;anticodon=(pos:complement(1676063..1676065));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06730;product=tRNA-Glu NZ_CP087677.1 RefSeq gene 1676180 1677448 . + . ID=gene-LPH39_RS06735;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=LPH39_RS06735;old_locus_tag=LPH39_06735 NZ_CP087677.1 Protein Homology CDS 1676180 1677448 . + 0 ID=cds-WP_081755429.1;Parent=gene-LPH39_RS06735;Dbxref=Genbank:WP_081755429.1;Name=WP_081755429.1;Ontology_term=GO:0006378,GO:0003723,GO:0004652;gbkey=CDS;gene=pcnB;go_function=RNA binding|0003723||IEA,polynucleotide adenylyltransferase activity|0004652||IEA;go_process=mRNA polyadenylation|0006378||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303731.1;locus_tag=LPH39_RS06735;product=polynucleotide adenylyltransferase PcnB;protein_id=WP_081755429.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1677469 1677960 . + . ID=gene-LPH39_RS06740;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=LPH39_RS06740;old_locus_tag=LPH39_06740 NZ_CP087677.1 Protein Homology CDS 1677469 1677960 . + 0 ID=cds-WP_038271121.1;Parent=gene-LPH39_RS06740;Dbxref=Genbank:WP_038271121.1;Name=WP_038271121.1;Ontology_term=GO:0009396,GO:0003848;gbkey=CDS;gene=folK;go_function=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity|0003848||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097533.1;locus_tag=LPH39_RS06740;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=WP_038271121.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1677993 1678811 . + . ID=gene-LPH39_RS06745;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=LPH39_RS06745;old_locus_tag=LPH39_06745 NZ_CP087677.1 Protein Homology CDS 1677993 1678811 . + 0 ID=cds-WP_038271078.1;Parent=gene-LPH39_RS06745;Dbxref=Genbank:WP_038271078.1;Name=WP_038271078.1;Ontology_term=GO:0015940,GO:0003864;gbkey=CDS;gene=panB;go_function=3-methyl-2-oxobutanoate hydroxymethyltransferase activity|0003864||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408567.1;locus_tag=LPH39_RS06745;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=WP_038271078.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1678808 1679653 . + . ID=gene-LPH39_RS06750;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=LPH39_RS06750;old_locus_tag=LPH39_06750 NZ_CP087677.1 Protein Homology CDS 1678808 1679653 . + 0 ID=cds-WP_038271079.1;Parent=gene-LPH39_RS06750;Dbxref=Genbank:WP_038271079.1;Name=WP_038271079.1;Ontology_term=GO:0015940,GO:0004592;gbkey=CDS;gene=panC;go_function=pantoate-beta-alanine ligase activity|0004592||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259031.1;locus_tag=LPH39_RS06750;product=pantoate--beta-alanine ligase;protein_id=WP_038271079.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1679738 1680118 . + . ID=gene-LPH39_RS06755;Name=LPH39_RS06755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06755;old_locus_tag=LPH39_06755 NZ_CP087677.1 Protein Homology CDS 1679738 1680118 . + 0 ID=cds-WP_038271081.1;Parent=gene-LPH39_RS06755;Dbxref=Genbank:WP_038271081.1;Name=WP_038271081.1;Ontology_term=GO:0006523,GO:0004068;gbkey=CDS;go_function=aspartate 1-decarboxylase activity|0004068||IEA;go_process=alanine biosynthetic process|0006523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036943.1;locus_tag=LPH39_RS06755;product=aspartate 1-decarboxylase;protein_id=WP_038271081.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1680122 1681630 . + . ID=gene-LPH39_RS06760;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=LPH39_RS06760;old_locus_tag=LPH39_06760 NZ_CP087677.1 Protein Homology CDS 1680122 1681630 . + 0 ID=cds-WP_038271082.1;Parent=gene-LPH39_RS06760;Dbxref=Genbank:WP_038271082.1;Name=WP_038271082.1;Ontology_term=GO:0006094,GO:0006096,GO:0004347;gbkey=CDS;gene=pgi;go_function=glucose-6-phosphate isomerase activity|0004347||IEA;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852608.1;locus_tag=LPH39_RS06760;product=glucose-6-phosphate isomerase;protein_id=WP_038271082.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1683523 1683596 . + . ID=gene-LPH39_RS06765;Name=LPH39_RS06765;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS06765;old_locus_tag=LPH39_06765 NZ_CP087677.1 tRNAscan-SE tRNA 1683523 1683596 . + . ID=rna-LPH39_RS06765;Parent=gene-LPH39_RS06765;anticodon=(pos:1683557..1683559);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06765;product=tRNA-Met NZ_CP087677.1 tRNAscan-SE exon 1683523 1683596 . + . ID=exon-LPH39_RS06765-1;Parent=rna-LPH39_RS06765;anticodon=(pos:1683557..1683559);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS06765;product=tRNA-Met NZ_CP087677.1 RefSeq gene 1685129 1685719 . + . ID=gene-LPH39_RS06770;Name=rimP;gbkey=Gene;gene=rimP;gene_biotype=protein_coding;locus_tag=LPH39_RS06770;old_locus_tag=LPH39_06770 NZ_CP087677.1 Protein Homology CDS 1685129 1685719 . + 0 ID=cds-WP_038271122.1;Parent=gene-LPH39_RS06770;Dbxref=Genbank:WP_038271122.1;Name=WP_038271122.1;gbkey=CDS;gene=rimP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300413.1;locus_tag=LPH39_RS06770;product=ribosome maturation factor RimP;protein_id=WP_038271122.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1685725 1687236 . + . ID=gene-LPH39_RS06775;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=LPH39_RS06775;old_locus_tag=LPH39_06775 NZ_CP087677.1 Protein Homology CDS 1685725 1687236 . + 0 ID=cds-WP_038271083.1;Parent=gene-LPH39_RS06775;Dbxref=Genbank:WP_038271083.1;Name=WP_038271083.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660577.1;locus_tag=LPH39_RS06775;product=transcription termination factor NusA;protein_id=WP_038271083.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1687333 1689996 . + . ID=gene-LPH39_RS06780;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=LPH39_RS06780;old_locus_tag=LPH39_06780 NZ_CP087677.1 Protein Homology CDS 1687333 1689996 . + 0 ID=cds-WP_038271084.1;Parent=gene-LPH39_RS06780;Dbxref=Genbank:WP_038271084.1;Name=WP_038271084.1;Ontology_term=GO:0006413,GO:0003743,GO:0005737;gbkey=CDS;gene=infB;go_component=cytoplasm|0005737||IEA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159225.1;locus_tag=LPH39_RS06780;product=translation initiation factor IF-2;protein_id=WP_038271084.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1690116 1690493 . + . ID=gene-LPH39_RS06785;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=LPH39_RS06785;old_locus_tag=LPH39_06785 NZ_CP087677.1 Protein Homology CDS 1690116 1690493 . + 0 ID=cds-WP_038271086.1;Parent=gene-LPH39_RS06785;Dbxref=Genbank:WP_038271086.1;Name=WP_038271086.1;Ontology_term=GO:0006396,GO:0019843;gbkey=CDS;gene=rbfA;go_function=rRNA binding|0019843||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892777.1;locus_tag=LPH39_RS06785;product=30S ribosome-binding factor RbfA;protein_id=WP_038271086.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1690590 1691492 . + . ID=gene-LPH39_RS06790;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=LPH39_RS06790;old_locus_tag=LPH39_06790 NZ_CP087677.1 Protein Homology CDS 1690590 1691492 . + 0 ID=cds-WP_038271087.1;Parent=gene-LPH39_RS06790;Dbxref=Genbank:WP_038271087.1;Name=WP_038271087.1;Ontology_term=GO:0006400,GO:0004730;gbkey=CDS;gene=truB;go_function=pseudouridylate synthase activity|0004730||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852611.1;locus_tag=LPH39_RS06790;product=tRNA pseudouridine(55) synthase TruB;protein_id=WP_038271087.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1691671 1691931 . + . ID=gene-LPH39_RS06795;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=LPH39_RS06795;old_locus_tag=LPH39_06795 NZ_CP087677.1 Protein Homology CDS 1691671 1691931 . + 0 ID=cds-WP_038271089.1;Parent=gene-LPH39_RS06795;Dbxref=Genbank:WP_038271089.1;Name=WP_038271089.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsO;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810194.1;locus_tag=LPH39_RS06795;product=30S ribosomal protein S15;protein_id=WP_038271089.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1692085 1694187 . + . ID=gene-LPH39_RS06800;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=LPH39_RS06800;old_locus_tag=LPH39_06800 NZ_CP087677.1 Protein Homology CDS 1692085 1694187 . + 0 ID=cds-WP_038271091.1;Parent=gene-LPH39_RS06800;Dbxref=Genbank:WP_038271091.1;Name=WP_038271091.1;Ontology_term=GO:0006402,GO:0004654;gbkey=CDS;gene=pnp;go_function=polyribonucleotide nucleotidyltransferase activity|0004654||IEA;go_process=mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086257.1;locus_tag=LPH39_RS06800;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_038271091.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1694654 1695085 . - . ID=gene-LPH39_RS06805;Name=LPH39_RS06805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06805;old_locus_tag=LPH39_06805 NZ_CP087677.1 Protein Homology CDS 1694654 1695085 . - 0 ID=cds-WP_038271092.1;Parent=gene-LPH39_RS06805;Dbxref=Genbank:WP_038271092.1;Name=WP_038271092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337583.1;locus_tag=LPH39_RS06805;product=helix-turn-helix domain-containing protein;protein_id=WP_038271092.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1695201 1696082 . + . ID=gene-LPH39_RS06810;Name=LPH39_RS06810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06810;old_locus_tag=LPH39_06810 NZ_CP087677.1 Protein Homology CDS 1695201 1696082 . + 0 ID=cds-WP_038271093.1;Parent=gene-LPH39_RS06810;Dbxref=Genbank:WP_038271093.1;Name=WP_038271093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089089.1;locus_tag=LPH39_RS06810;product=SDR family oxidoreductase;protein_id=WP_038271093.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1697528 1700611 . - . ID=gene-LPH39_RS06815;Name=LPH39_RS06815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06815;old_locus_tag=LPH39_06815 NZ_CP087677.1 Protein Homology CDS 1697528 1700611 . - 0 ID=cds-WP_038271094.1;Parent=gene-LPH39_RS06815;Dbxref=Genbank:WP_038271094.1;Name=WP_038271094.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097539.1;locus_tag=LPH39_RS06815;product=efflux RND transporter permease subunit;protein_id=WP_038271094.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1700608 1701717 . - . ID=gene-LPH39_RS06820;Name=LPH39_RS06820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06820;old_locus_tag=LPH39_06820 NZ_CP087677.1 Protein Homology CDS 1700608 1701717 . - 0 ID=cds-WP_081755432.1;Parent=gene-LPH39_RS06820;Dbxref=Genbank:WP_081755432.1;Name=WP_081755432.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851442.1;locus_tag=LPH39_RS06820;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_081755432.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1702357 1702485 . + . ID=gene-LPH39_RS12030;Name=LPH39_RS12030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12030 NZ_CP087677.1 GeneMarkS-2+ CDS 1702357 1702485 . + 0 ID=cds-WP_267903166.1;Parent=gene-LPH39_RS12030;Dbxref=Genbank:WP_267903166.1;Name=WP_267903166.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12030;product=hypothetical protein;protein_id=WP_267903166.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1702643 1703455 . - . ID=gene-LPH39_RS06825;Name=LPH39_RS06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06825;old_locus_tag=LPH39_06825 NZ_CP087677.1 Protein Homology CDS 1702643 1703455 . - 0 ID=cds-WP_081755431.1;Parent=gene-LPH39_RS06825;Dbxref=Genbank:WP_081755431.1;Name=WP_081755431.1;Ontology_term=GO:0006812,GO:0055085,GO:0015299,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=solute:proton antiporter activity|0015299||IEA;go_process=cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:NF013188.2;locus_tag=LPH39_RS06825;product=cation:proton antiporter;protein_id=WP_081755431.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1704238 1704447 . - . ID=gene-LPH39_RS06830;Name=LPH39_RS06830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06830;old_locus_tag=LPH39_06830 NZ_CP087677.1 GeneMarkS-2+ CDS 1704238 1704447 . - 0 ID=cds-WP_038271095.1;Parent=gene-LPH39_RS06830;Dbxref=Genbank:WP_038271095.1;Name=WP_038271095.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06830;product=hypothetical protein;protein_id=WP_038271095.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1704593 1705492 . + . ID=gene-LPH39_RS06835;Name=LPH39_RS06835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06835;old_locus_tag=LPH39_06835 NZ_CP087677.1 Protein Homology CDS 1704593 1705492 . + 0 ID=cds-WP_171898070.1;Parent=gene-LPH39_RS06835;Dbxref=Genbank:WP_171898070.1;Name=WP_171898070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304048.1;locus_tag=LPH39_RS06835;product=DMT family transporter;protein_id=WP_171898070.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1706222 1706413 . - . ID=gene-LPH39_RS06840;Name=LPH39_RS06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06840;old_locus_tag=LPH39_06840 NZ_CP087677.1 GeneMarkS-2+ CDS 1706222 1706413 . - 0 ID=cds-WP_114867058.1;Parent=gene-LPH39_RS06840;Dbxref=Genbank:WP_114867058.1;Name=WP_114867058.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06840;product=hypothetical protein;protein_id=WP_114867058.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1707043 1708866 . - . ID=gene-LPH39_RS06845;Name=LPH39_RS06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06845;old_locus_tag=LPH39_06845 NZ_CP087677.1 Protein Homology CDS 1707043 1708866 . - 0 ID=cds-WP_038271096.1;Parent=gene-LPH39_RS06845;Dbxref=Genbank:WP_038271096.1;Name=WP_038271096.1;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851446.1;locus_tag=LPH39_RS06845;product=DEAD/DEAH box helicase;protein_id=WP_038271096.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1709222 1710169 . - . ID=gene-LPH39_RS06850;Name=LPH39_RS06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06850;old_locus_tag=LPH39_06850 NZ_CP087677.1 Protein Homology CDS 1709222 1710169 . - 0 ID=cds-WP_038271097.1;Parent=gene-LPH39_RS06850;Dbxref=Genbank:WP_038271097.1;Name=WP_038271097.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449664.1;locus_tag=LPH39_RS06850;product=electron transfer flavoprotein subunit alpha/FixB family protein;protein_id=WP_038271097.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1710166 1710915 . - . ID=gene-LPH39_RS06855;Name=LPH39_RS06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06855;old_locus_tag=LPH39_06855 NZ_CP087677.1 Protein Homology CDS 1710166 1710915 . - 0 ID=cds-WP_038271098.1;Parent=gene-LPH39_RS06855;Dbxref=Genbank:WP_038271098.1;Name=WP_038271098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086235.1;locus_tag=LPH39_RS06855;product=electron transfer flavoprotein subunit beta/FixA family protein;protein_id=WP_038271098.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1711129 1712184 . + . ID=gene-LPH39_RS06860;Name=rfbB;gbkey=Gene;gene=rfbB;gene_biotype=protein_coding;locus_tag=LPH39_RS06860;old_locus_tag=LPH39_06860 NZ_CP087677.1 Protein Homology CDS 1711129 1712184 . + 0 ID=cds-WP_038271099.1;Parent=gene-LPH39_RS06860;Dbxref=Genbank:WP_038271099.1;Name=WP_038271099.1;Ontology_term=GO:0009243,GO:0019305,GO:0008460;gbkey=CDS;gene=rfbB;go_function=dTDP-glucose 4%2C6-dehydratase activity|0008460||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270013.1;locus_tag=LPH39_RS06860;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_038271099.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1712247 1713134 . + . ID=gene-LPH39_RS06865;Name=rfbA;gbkey=Gene;gene=rfbA;gene_biotype=protein_coding;locus_tag=LPH39_RS06865;old_locus_tag=LPH39_06865 NZ_CP087677.1 Protein Homology CDS 1712247 1713134 . + 0 ID=cds-WP_038271100.1;Parent=gene-LPH39_RS06865;Dbxref=Genbank:WP_038271100.1;Name=WP_038271100.1;Ontology_term=GO:0009243,GO:0019305,GO:0008879;gbkey=CDS;gene=rfbA;go_function=glucose-1-phosphate thymidylyltransferase activity|0008879||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903936.1;locus_tag=LPH39_RS06865;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_038271100.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1713131 1713688 . + . ID=gene-LPH39_RS06870;Name=rfbC;gbkey=Gene;gene=rfbC;gene_biotype=protein_coding;locus_tag=LPH39_RS06870;old_locus_tag=LPH39_06870 NZ_CP087677.1 Protein Homology CDS 1713131 1713688 . + 0 ID=cds-WP_038271101.1;Parent=gene-LPH39_RS06870;Dbxref=Genbank:WP_038271101.1;Name=WP_038271101.1;Ontology_term=GO:0009243,GO:0019305,GO:0008830;gbkey=CDS;gene=rfbC;go_function=dTDP-4-dehydrorhamnose 3%2C5-epimerase activity|0008830||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377788.1;locus_tag=LPH39_RS06870;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=WP_038271101.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1713685 1714593 . + . ID=gene-LPH39_RS06875;Name=rfbD;gbkey=Gene;gene=rfbD;gene_biotype=protein_coding;locus_tag=LPH39_RS06875;old_locus_tag=LPH39_06875 NZ_CP087677.1 Protein Homology CDS 1713685 1714593 . + 0 ID=cds-WP_038271102.1;Parent=gene-LPH39_RS06875;Dbxref=Genbank:WP_038271102.1;Name=WP_038271102.1;Ontology_term=GO:0009243,GO:0019305,GO:0008831;gbkey=CDS;gene=rfbD;go_function=dTDP-4-dehydrorhamnose reductase activity|0008831||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851453.1;locus_tag=LPH39_RS06875;product=dTDP-4-dehydrorhamnose reductase;protein_id=WP_038271102.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1714762 1716165 . - . ID=gene-LPH39_RS06880;Name=LPH39_RS06880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06880;old_locus_tag=LPH39_06880 NZ_CP087677.1 Protein Homology CDS 1714762 1716165 . - 0 ID=cds-WP_038271103.1;Parent=gene-LPH39_RS06880;Dbxref=Genbank:WP_038271103.1;Name=WP_038271103.1;Ontology_term=GO:0009103,GO:0004476;gbkey=CDS;go_function=mannose-6-phosphate isomerase activity|0004476||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850199.1;locus_tag=LPH39_RS06880;product=mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase;protein_id=WP_038271103.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1716225 1717574 . - . ID=gene-LPH39_RS06885;Name=LPH39_RS06885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06885;old_locus_tag=LPH39_06885 NZ_CP087677.1 Protein Homology CDS 1716225 1717574 . - 0 ID=cds-WP_038271104.1;Parent=gene-LPH39_RS06885;Dbxref=Genbank:WP_038271104.1;Name=WP_038271104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851455.1;locus_tag=LPH39_RS06885;product=phosphomannomutase/phosphoglucomutase;protein_id=WP_038271104.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1719322 1719540 . + . ID=gene-LPH39_RS06890;Name=LPH39_RS06890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06890;old_locus_tag=LPH39_06890 NZ_CP087677.1 GeneMarkS-2+ CDS 1719322 1719540 . + 0 ID=cds-WP_152536606.1;Parent=gene-LPH39_RS06890;Dbxref=Genbank:WP_152536606.1;Name=WP_152536606.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06890;product=hypothetical protein;protein_id=WP_152536606.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1719863 1720171 . + . ID=gene-LPH39_RS06895;Name=LPH39_RS06895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06895;old_locus_tag=LPH39_06895 NZ_CP087677.1 Protein Homology CDS 1719863 1720171 . + 0 ID=cds-WP_038271109.1;Parent=gene-LPH39_RS06895;Dbxref=Genbank:WP_038271109.1;Name=WP_038271109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892802.1;locus_tag=LPH39_RS06895;product=hypothetical protein;protein_id=WP_038271109.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1721664 1722071 . + . ID=gene-LPH39_RS06900;Name=LPH39_RS06900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06900;old_locus_tag=LPH39_06900 NZ_CP087677.1 GeneMarkS-2+ CDS 1721664 1722071 . + 0 ID=cds-WP_069636209.1;Parent=gene-LPH39_RS06900;Dbxref=Genbank:WP_069636209.1;Name=WP_069636209.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06900;product=hypothetical protein;protein_id=WP_069636209.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1722412 1722534 . - . ID=gene-LPH39_RS12035;Name=LPH39_RS12035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12035 NZ_CP087677.1 GeneMarkS-2+ CDS 1722412 1722534 . - 0 ID=cds-WP_267903167.1;Parent=gene-LPH39_RS12035;Dbxref=Genbank:WP_267903167.1;Name=WP_267903167.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12035;product=hypothetical protein;protein_id=WP_267903167.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1722740 1723051 . + . ID=gene-LPH39_RS06905;Name=LPH39_RS06905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06905;old_locus_tag=LPH39_06905 NZ_CP087677.1 Protein Homology CDS 1722740 1723051 . + 0 ID=cds-WP_038271126.1;Parent=gene-LPH39_RS06905;Dbxref=Genbank:WP_038271126.1;Name=WP_038271126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011153918.1;locus_tag=LPH39_RS06905;product=hypothetical protein;protein_id=WP_038271126.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1723463 1723669 . - . ID=gene-LPH39_RS06910;Name=LPH39_RS06910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06910;old_locus_tag=LPH39_06910 NZ_CP087677.1 GeneMarkS-2+ CDS 1723463 1723669 . - 0 ID=cds-WP_069636211.1;Parent=gene-LPH39_RS06910;Dbxref=Genbank:WP_069636211.1;Name=WP_069636211.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06910;product=hypothetical protein;protein_id=WP_069636211.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1723865 1724029 . - . ID=gene-LPH39_RS06915;Name=LPH39_RS06915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06915;old_locus_tag=LPH39_06915 NZ_CP087677.1 GeneMarkS-2+ CDS 1723865 1724029 . - 0 ID=cds-WP_160165166.1;Parent=gene-LPH39_RS06915;Dbxref=Genbank:WP_160165166.1;Name=WP_160165166.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06915;product=hypothetical protein;protein_id=WP_160165166.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1724666 1724860 . - . ID=gene-LPH39_RS06920;Name=LPH39_RS06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06920;old_locus_tag=LPH39_06920 NZ_CP087677.1 GeneMarkS-2+ CDS 1724666 1724860 . - 0 ID=cds-WP_038271113.1;Parent=gene-LPH39_RS06920;Dbxref=Genbank:WP_038271113.1;Name=WP_038271113.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06920;product=hypothetical protein;protein_id=WP_038271113.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1725108 1727999 . + . ID=gene-LPH39_RS06925;Name=LPH39_RS06925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06925;old_locus_tag=LPH39_06925 NZ_CP087677.1 Protein Homology CDS 1725108 1727999 . + 0 ID=cds-WP_171898040.1;Parent=gene-LPH39_RS06925;Dbxref=Genbank:WP_171898040.1;Name=WP_171898040.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097586.1;locus_tag=LPH39_RS06925;product=S8 family serine peptidase;protein_id=WP_171898040.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1728733 1729398 . - . ID=gene-LPH39_RS12040;Name=LPH39_RS12040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12040 NZ_CP087677.1 GeneMarkS-2+ CDS 1728733 1729398 . - 0 ID=cds-WP_267903168.1;Parent=gene-LPH39_RS12040;Dbxref=Genbank:WP_267903168.1;Name=WP_267903168.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12040;product=hypothetical protein;protein_id=WP_267903168.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1729493 1732114 . + . ID=gene-LPH39_RS06930;Name=LPH39_RS06930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06930;old_locus_tag=LPH39_06930 NZ_CP087677.1 Protein Homology CDS 1729493 1732114 . + 0 ID=cds-WP_267903169.1;Parent=gene-LPH39_RS06930;Dbxref=Genbank:WP_267903169.1;Name=WP_267903169.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337847.1;locus_tag=LPH39_RS06930;product=S8 family serine peptidase;protein_id=WP_267903169.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1732297 1733472 . - . ID=gene-LPH39_RS06935;Name=LPH39_RS06935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06935;old_locus_tag=LPH39_06935 NZ_CP087677.1 Protein Homology CDS 1732297 1733472 . - 0 ID=cds-WP_230428151.1;Parent=gene-LPH39_RS06935;Dbxref=Genbank:WP_230428151.1;Name=WP_230428151.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097547.1;locus_tag=LPH39_RS06935;product=MFS transporter;protein_id=WP_230428151.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1734146 1734559 . + . ID=gene-LPH39_RS06940;Name=LPH39_RS06940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06940;old_locus_tag=LPH39_06940 NZ_CP087677.1 GeneMarkS-2+ CDS 1734146 1734559 . + 0 ID=cds-WP_069636205.1;Parent=gene-LPH39_RS06940;Dbxref=Genbank:WP_069636205.1;Name=WP_069636205.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06940;product=SAM-dependent methyltransferase;protein_id=WP_069636205.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1734866 1735441 . - . ID=gene-LPH39_RS06945;Name=LPH39_RS06945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06945;old_locus_tag=LPH39_06945 NZ_CP087677.1 Protein Homology CDS 1734866 1735441 . - 0 ID=cds-WP_038270840.1;Parent=gene-LPH39_RS06945;Dbxref=Genbank:WP_038270840.1;Name=WP_038270840.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851002.1;locus_tag=LPH39_RS06945;product=DUF1439 domain-containing protein;protein_id=WP_038270840.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1735915 1737168 . - . ID=gene-LPH39_RS06950;Name=LPH39_RS06950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06950;old_locus_tag=LPH39_06950 NZ_CP087677.1 Protein Homology CDS 1735915 1737168 . - 0 ID=cds-WP_038270837.1;Parent=gene-LPH39_RS06950;Dbxref=Genbank:WP_038270837.1;Name=WP_038270837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087999.1;locus_tag=LPH39_RS06950;product=6-phosphofructokinase;protein_id=WP_038270837.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1737313 1737876 . + . ID=gene-LPH39_RS06955;Name=LPH39_RS06955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06955;old_locus_tag=LPH39_06955 NZ_CP087677.1 Protein Homology CDS 1737313 1737876 . + 0 ID=cds-WP_038270836.1;Parent=gene-LPH39_RS06955;Dbxref=Genbank:WP_038270836.1;Name=WP_038270836.1;Ontology_term=GO:0006139,GO:0005524,GO:0019205;gbkey=CDS;go_function=ATP binding|0005524||IEA,nucleobase-containing compound kinase activity|0019205||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364422.1;locus_tag=LPH39_RS06955;product=adenylate kinase;protein_id=WP_038270836.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1738164 1739579 . + . ID=gene-LPH39_RS06960;Name=mpl;gbkey=Gene;gene=mpl;gene_biotype=protein_coding;locus_tag=LPH39_RS06960;old_locus_tag=LPH39_06960 NZ_CP087677.1 Protein Homology CDS 1738164 1739579 . + 0 ID=cds-WP_038270870.1;Parent=gene-LPH39_RS06960;Dbxref=Genbank:WP_038270870.1;Name=WP_038270870.1;Ontology_term=GO:0009252,GO:0016881;gbkey=CDS;gene=mpl;go_function=acid-amino acid ligase activity|0016881||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851061.1;locus_tag=LPH39_RS06960;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=WP_038270870.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1740215 1742242 . - . ID=gene-LPH39_RS06965;Name=LPH39_RS06965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06965;old_locus_tag=LPH39_06965 NZ_CP087677.1 Protein Homology CDS 1740215 1742242 . - 0 ID=cds-WP_038270834.1;Parent=gene-LPH39_RS06965;Dbxref=Genbank:WP_038270834.1;Name=WP_038270834.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851005.1;locus_tag=LPH39_RS06965;product=bifunctional DedA family/phosphatase PAP2 family protein;protein_id=WP_038270834.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1742333 1742992 . + . ID=gene-LPH39_RS06970;Name=LPH39_RS06970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06970;old_locus_tag=LPH39_06970 NZ_CP087677.1 Protein Homology CDS 1742333 1742992 . + 0 ID=cds-WP_038270869.1;Parent=gene-LPH39_RS06970;Dbxref=Genbank:WP_038270869.1;Name=WP_038270869.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087991.1;locus_tag=LPH39_RS06970;product=serine/threonine-protein kinase;protein_id=WP_038270869.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1743537 1743758 . + . ID=gene-LPH39_RS06975;Name=LPH39_RS06975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06975;old_locus_tag=LPH39_06975 NZ_CP087677.1 GeneMarkS-2+ CDS 1743537 1743758 . + 0 ID=cds-WP_152536597.1;Parent=gene-LPH39_RS06975;Dbxref=Genbank:WP_152536597.1;Name=WP_152536597.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06975;product=hypothetical protein;protein_id=WP_152536597.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1744083 1744313 . + . ID=gene-LPH39_RS06980;Name=LPH39_RS06980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06980;old_locus_tag=LPH39_06980 NZ_CP087677.1 GeneMarkS-2+ CDS 1744083 1744313 . + 0 ID=cds-WP_152536596.1;Parent=gene-LPH39_RS06980;Dbxref=Genbank:WP_152536596.1;Name=WP_152536596.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06980;product=hypothetical protein;protein_id=WP_152536596.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1745336 1746196 . + . ID=gene-LPH39_RS06985;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=LPH39_RS06985;old_locus_tag=LPH39_06985 NZ_CP087677.1 Protein Homology CDS 1745336 1746196 . + 0 ID=cds-WP_051482288.1;Parent=gene-LPH39_RS06985;Dbxref=Genbank:WP_051482288.1;Name=WP_051482288.1;Ontology_term=GO:0006810,GO:0005215,GO:0005886;gbkey=CDS;gene=rarD;go_component=plasma membrane|0005886||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902633.1;locus_tag=LPH39_RS06985;product=EamA family transporter RarD;protein_id=WP_051482288.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1746945 1748312 . - . ID=gene-LPH39_RS06990;Name=LPH39_RS06990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06990;old_locus_tag=LPH39_06990 NZ_CP087677.1 Protein Homology CDS 1746945 1748312 . - 0 ID=cds-WP_038270828.1;Parent=gene-LPH39_RS06990;Dbxref=Genbank:WP_038270828.1;Name=WP_038270828.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851007.1;locus_tag=LPH39_RS06990;product=M17 family metallopeptidase;protein_id=WP_038270828.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1748560 1748802 . - . ID=gene-LPH39_RS06995;Name=LPH39_RS06995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS06995;old_locus_tag=LPH39_06995 NZ_CP087677.1 GeneMarkS-2+ CDS 1748560 1748802 . - 0 ID=cds-WP_038270827.1;Parent=gene-LPH39_RS06995;Dbxref=Genbank:WP_038270827.1;Name=WP_038270827.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS06995;product=hypothetical protein;protein_id=WP_038270827.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1748841 1749950 . - . ID=gene-LPH39_RS07000;Name=LPH39_RS07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07000;old_locus_tag=LPH39_07000 NZ_CP087677.1 Protein Homology CDS 1748841 1749950 . - 0 ID=cds-WP_038270826.1;Parent=gene-LPH39_RS07000;Dbxref=Genbank:WP_038270826.1;Name=WP_038270826.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087985.1;locus_tag=LPH39_RS07000;product=AI-2E family transporter;protein_id=WP_038270826.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1750035 1750424 . - . ID=gene-LPH39_RS07005;Name=LPH39_RS07005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07005;old_locus_tag=LPH39_07005 NZ_CP087677.1 Protein Homology CDS 1750035 1750424 . - 0 ID=cds-WP_038270824.1;Parent=gene-LPH39_RS07005;Dbxref=Genbank:WP_038270824.1;Name=WP_038270824.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851009.1;locus_tag=LPH39_RS07005;product=hypothetical protein;protein_id=WP_038270824.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1750421 1750900 . - . ID=gene-LPH39_RS07010;Name=LPH39_RS07010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07010;old_locus_tag=LPH39_07010 NZ_CP087677.1 Protein Homology CDS 1750421 1750900 . - 0 ID=cds-WP_051482286.1;Parent=gene-LPH39_RS07010;Dbxref=Genbank:WP_051482286.1;Name=WP_051482286.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085335.1;locus_tag=LPH39_RS07010;product=hypothetical protein;protein_id=WP_051482286.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1750906 1751268 . - . ID=gene-LPH39_RS07015;Name=LPH39_RS07015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07015;old_locus_tag=LPH39_07015 NZ_CP087677.1 Protein Homology CDS 1750906 1751268 . - 0 ID=cds-WP_038270823.1;Parent=gene-LPH39_RS07015;Dbxref=Genbank:WP_038270823.1;Name=WP_038270823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010486932.1;locus_tag=LPH39_RS07015;product=hypothetical protein;protein_id=WP_038270823.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1751577 1753022 . - . ID=gene-LPH39_RS07020;Name=LPH39_RS07020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07020;old_locus_tag=LPH39_07020 NZ_CP087677.1 Protein Homology CDS 1751577 1753022 . - 0 ID=cds-WP_038270822.1;Parent=gene-LPH39_RS07020;Dbxref=Genbank:WP_038270822.1;Name=WP_038270822.1;Ontology_term=GO:0006508,GO:0006950,GO:0004252,GO:0005515,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=serine-type endopeptidase activity|0004252||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA,response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257055.1;locus_tag=LPH39_RS07020;product=Do family serine endopeptidase;protein_id=WP_038270822.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1753853 1754749 . - . ID=gene-LPH39_RS07025;Name=LPH39_RS07025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07025;old_locus_tag=LPH39_07025 NZ_CP087677.1 Protein Homology CDS 1753853 1754749 . - 0 ID=cds-WP_038270821.1;Parent=gene-LPH39_RS07025;Dbxref=Genbank:WP_038270821.1;Name=WP_038270821.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851011.1;locus_tag=LPH39_RS07025;product=TIGR01777 family oxidoreductase;protein_id=WP_038270821.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1756105 1757790 . - . ID=gene-LPH39_RS07030;Name=LPH39_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07030;old_locus_tag=LPH39_07030 NZ_CP087677.1 Protein Homology CDS 1756105 1757790 . - 0 ID=cds-WP_038270820.1;Parent=gene-LPH39_RS07030;Dbxref=Genbank:WP_038270820.1;Name=WP_038270820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571491.1;locus_tag=LPH39_RS07030;product=long-chain fatty acid--CoA ligase;protein_id=WP_038270820.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1759102 1761843 . - . ID=gene-LPH39_RS07035;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=LPH39_RS07035;old_locus_tag=LPH39_07035 NZ_CP087677.1 Protein Homology CDS 1759102 1761843 . - 0 ID=cds-WP_038270818.1;Parent=gene-LPH39_RS07035;Dbxref=Genbank:WP_038270818.1;Name=WP_038270818.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnA;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851015.1;locus_tag=LPH39_RS07035;product=aconitate hydratase AcnA;protein_id=WP_038270818.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1762100 1762339 . + . ID=gene-LPH39_RS07040;Name=LPH39_RS07040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07040;old_locus_tag=LPH39_07040 NZ_CP087677.1 Protein Homology CDS 1762100 1762339 . + 0 ID=cds-WP_038270817.1;Parent=gene-LPH39_RS07040;Dbxref=Genbank:WP_038270817.1;Name=WP_038270817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085317.1;locus_tag=LPH39_RS07040;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_038270817.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1762344 1762742 . + . ID=gene-LPH39_RS07045;Name=LPH39_RS07045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07045;old_locus_tag=LPH39_07045 NZ_CP087677.1 Protein Homology CDS 1762344 1762742 . + 0 ID=cds-WP_038270867.1;Parent=gene-LPH39_RS07045;Dbxref=Genbank:WP_038270867.1;Name=WP_038270867.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008267153.1;locus_tag=LPH39_RS07045;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_038270867.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1762792 1765395 . + . ID=gene-LPH39_RS07050;Name=acnB;gbkey=Gene;gene=acnB;gene_biotype=protein_coding;locus_tag=LPH39_RS07050;old_locus_tag=LPH39_07050 NZ_CP087677.1 Protein Homology CDS 1762792 1765395 . + 0 ID=cds-WP_038270816.1;Parent=gene-LPH39_RS07050;Dbxref=Genbank:WP_038270816.1;Name=WP_038270816.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnB;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017908727.1;locus_tag=LPH39_RS07050;product=bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase;protein_id=WP_038270816.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1766045 1766120 . + . ID=gene-LPH39_RS07055;Name=LPH39_RS07055;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS07055;old_locus_tag=LPH39_07055 NZ_CP087677.1 tRNAscan-SE tRNA 1766045 1766120 . + . ID=rna-LPH39_RS07055;Parent=gene-LPH39_RS07055;anticodon=(pos:1766078..1766080);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS07055;product=tRNA-Phe NZ_CP087677.1 tRNAscan-SE exon 1766045 1766120 . + . ID=exon-LPH39_RS07055-1;Parent=rna-LPH39_RS07055;anticodon=(pos:1766078..1766080);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS07055;product=tRNA-Phe NZ_CP087677.1 RefSeq gene 1766257 1766571 . + . ID=gene-LPH39_RS07060;Name=LPH39_RS07060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07060;old_locus_tag=LPH39_07060 NZ_CP087677.1 GeneMarkS-2+ CDS 1766257 1766571 . + 0 ID=cds-WP_160165155.1;Parent=gene-LPH39_RS07060;Dbxref=Genbank:WP_160165155.1;Name=WP_160165155.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07060;product=hypothetical protein;protein_id=WP_160165155.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1766637 1768397 . + . ID=gene-LPH39_RS07065;Name=LPH39_RS07065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07065;old_locus_tag=LPH39_07065 NZ_CP087677.1 Protein Homology CDS 1766637 1768397 . + 0 ID=cds-WP_038270814.1;Parent=gene-LPH39_RS07065;Dbxref=Genbank:WP_038270814.1;Name=WP_038270814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903354.1;locus_tag=LPH39_RS07065;product=class I SAM-dependent DNA methyltransferase;protein_id=WP_038270814.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1768387 1769760 . + . ID=gene-LPH39_RS07070;Name=LPH39_RS07070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07070;old_locus_tag=LPH39_07070 NZ_CP087677.1 GeneMarkS-2+ CDS 1768387 1769760 . + 0 ID=cds-WP_051482285.1;Parent=gene-LPH39_RS07070;Dbxref=Genbank:WP_051482285.1;Name=WP_051482285.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07070;product=restriction endonuclease subunit S;protein_id=WP_051482285.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1769760 1770782 . + . ID=gene-LPH39_RS07075;Name=LPH39_RS07075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07075;old_locus_tag=LPH39_07075 NZ_CP087677.1 Protein Homology CDS 1769760 1770782 . + 0 ID=cds-WP_200866188.1;Parent=gene-LPH39_RS07075;Dbxref=Genbank:WP_200866188.1;Name=WP_200866188.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024685.2;locus_tag=LPH39_RS07075;product=SIR2 family protein;protein_id=WP_200866188.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1770772 1771233 . + . ID=gene-LPH39_RS07080;Name=LPH39_RS07080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07080;old_locus_tag=LPH39_07080 NZ_CP087677.1 Protein Homology CDS 1770772 1771233 . + 0 ID=cds-WP_200866187.1;Parent=gene-LPH39_RS07080;Dbxref=Genbank:WP_200866187.1;Name=WP_200866187.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025468.2;locus_tag=LPH39_RS07080;product=DUF4276 family protein;protein_id=WP_200866187.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1771242 1774412 . + . ID=gene-LPH39_RS07085;Name=LPH39_RS07085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07085;old_locus_tag=LPH39_07085 NZ_CP087677.1 Protein Homology CDS 1771242 1774412 . + 0 ID=cds-WP_038270864.1;Parent=gene-LPH39_RS07085;Dbxref=Genbank:WP_038270864.1;Name=WP_038270864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001001495.1;locus_tag=LPH39_RS07085;product=type I restriction endonuclease subunit R;protein_id=WP_038270864.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1774598 1775458 . + . ID=gene-LPH39_RS07090;Name=LPH39_RS07090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07090;old_locus_tag=LPH39_07090 NZ_CP087677.1 GeneMarkS-2+ CDS 1774598 1775458 . + 0 ID=cds-WP_160165153.1;Parent=gene-LPH39_RS07090;Dbxref=Genbank:WP_160165153.1;Name=WP_160165153.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07090;product=ABC transporter permease;protein_id=WP_160165153.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1775572 1775922 . + . ID=gene-LPH39_RS07095;Name=LPH39_RS07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07095;old_locus_tag=LPH39_07095 NZ_CP087677.1 GeneMarkS-2+ CDS 1775572 1775922 . + 0 ID=cds-WP_160199326.1;Parent=gene-LPH39_RS07095;Dbxref=Genbank:WP_160199326.1;Name=WP_160199326.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07095;product=hypothetical protein;protein_id=WP_160199326.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1777060 1777812 . + . ID=gene-LPH39_RS07100;Name=LPH39_RS07100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07100;old_locus_tag=LPH39_07100 NZ_CP087677.1 Protein Homology CDS 1777060 1777812 . + 0 ID=cds-WP_038270810.1;Parent=gene-LPH39_RS07100;Dbxref=Genbank:WP_038270810.1;Name=WP_038270810.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024950.2;locus_tag=LPH39_RS07100;product=SDR family oxidoreductase;protein_id=WP_038270810.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1778210 1778986 . + . ID=gene-LPH39_RS07105;Name=tpiA;gbkey=Gene;gene=tpiA;gene_biotype=protein_coding;locus_tag=LPH39_RS07105;old_locus_tag=LPH39_07105 NZ_CP087677.1 Protein Homology CDS 1778210 1778986 . + 0 ID=cds-WP_038270809.1;Parent=gene-LPH39_RS07105;Dbxref=Genbank:WP_038270809.1;Name=WP_038270809.1;Ontology_term=GO:0006096,GO:0004807;gbkey=CDS;gene=tpiA;go_function=triose-phosphate isomerase activity|0004807||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156090.1;locus_tag=LPH39_RS07105;product=triose-phosphate isomerase;protein_id=WP_038270809.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1778980 1779390 . + . ID=gene-LPH39_RS07110;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=LPH39_RS07110;old_locus_tag=LPH39_07110 NZ_CP087677.1 Protein Homology CDS 1778980 1779390 . + 0 ID=cds-WP_038270808.1;Parent=gene-LPH39_RS07110;Dbxref=Genbank:WP_038270808.1;Name=WP_038270808.1;Ontology_term=GO:0043952,GO:0015450,GO:0005886;gbkey=CDS;gene=secG;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892840.1;locus_tag=LPH39_RS07110;product=preprotein translocase subunit SecG;protein_id=WP_038270808.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1779441 1779525 . + . ID=gene-LPH39_RS07115;Name=LPH39_RS07115;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS07115;old_locus_tag=LPH39_07115 NZ_CP087677.1 tRNAscan-SE tRNA 1779441 1779525 . + . ID=rna-LPH39_RS07115;Parent=gene-LPH39_RS07115;anticodon=(pos:1779475..1779477);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS07115;product=tRNA-Leu NZ_CP087677.1 tRNAscan-SE exon 1779441 1779525 . + . ID=exon-LPH39_RS07115-1;Parent=rna-LPH39_RS07115;anticodon=(pos:1779475..1779477);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS07115;product=tRNA-Leu NZ_CP087677.1 RefSeq gene 1779639 1779995 . + . ID=gene-LPH39_RS07120;Name=LPH39_RS07120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07120;old_locus_tag=LPH39_07120 NZ_CP087677.1 Protein Homology CDS 1779639 1779995 . + 0 ID=cds-WP_038270807.1;Parent=gene-LPH39_RS07120;Dbxref=Genbank:WP_038270807.1;Name=WP_038270807.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003467430.1;locus_tag=LPH39_RS07120;product=NADH-quinone oxidoreductase subunit A;protein_id=WP_038270807.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1779986 1780540 . + . ID=gene-LPH39_RS07125;Name=LPH39_RS07125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07125;old_locus_tag=LPH39_07125 NZ_CP087677.1 Protein Homology CDS 1779986 1780540 . + 0 ID=cds-WP_038270806.1;Parent=gene-LPH39_RS07125;Dbxref=Genbank:WP_038270806.1;Name=WP_038270806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914280.1;locus_tag=LPH39_RS07125;product=NADH-quinone oxidoreductase subunit B;protein_id=WP_038270806.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1780591 1781328 . + . ID=gene-LPH39_RS07130;Name=LPH39_RS07130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07130;old_locus_tag=LPH39_07130 NZ_CP087677.1 Protein Homology CDS 1780591 1781328 . + 0 ID=cds-WP_038270805.1;Parent=gene-LPH39_RS07130;Dbxref=Genbank:WP_038270805.1;Name=WP_038270805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927494.1;locus_tag=LPH39_RS07130;product=NADH-quinone oxidoreductase subunit C;protein_id=WP_038270805.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1781329 1782636 . + . ID=gene-LPH39_RS07135;Name=LPH39_RS07135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07135;old_locus_tag=LPH39_07135 NZ_CP087677.1 Protein Homology CDS 1781329 1782636 . + 0 ID=cds-WP_038270803.1;Parent=gene-LPH39_RS07135;Dbxref=Genbank:WP_038270803.1;Name=WP_038270803.1;Ontology_term=GO:0016651,GO:0048038,GO:0051287;gbkey=CDS;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,quinone binding|0048038||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810223.1;locus_tag=LPH39_RS07135;product=NADH-quinone oxidoreductase subunit D;protein_id=WP_038270803.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1782633 1783160 . + . ID=gene-LPH39_RS07140;Name=nuoE;gbkey=Gene;gene=nuoE;gene_biotype=protein_coding;locus_tag=LPH39_RS07140;old_locus_tag=LPH39_07140 NZ_CP087677.1 Protein Homology CDS 1782633 1783160 . + 0 ID=cds-WP_038270802.1;Parent=gene-LPH39_RS07140;Dbxref=Genbank:WP_038270802.1;Name=WP_038270802.1;gbkey=CDS;gene=nuoE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410460.1;locus_tag=LPH39_RS07140;product=NADH-quinone oxidoreductase subunit NuoE;protein_id=WP_038270802.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1783165 1784499 . + . ID=gene-LPH39_RS07145;Name=nuoF;gbkey=Gene;gene=nuoF;gene_biotype=protein_coding;locus_tag=LPH39_RS07145;old_locus_tag=LPH39_07145 NZ_CP087677.1 Protein Homology CDS 1783165 1784499 . + 0 ID=cds-WP_038270862.1;Parent=gene-LPH39_RS07145;Dbxref=Genbank:WP_038270862.1;Name=WP_038270862.1;Ontology_term=GO:0050136;gbkey=CDS;gene=nuoF;go_function=NADH dehydrogenase (quinone) activity|0050136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851036.1;locus_tag=LPH39_RS07145;product=NADH-quinone oxidoreductase subunit NuoF;protein_id=WP_038270862.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1784496 1786730 . + . ID=gene-LPH39_RS07150;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=LPH39_RS07150;old_locus_tag=LPH39_07150 NZ_CP087677.1 Protein Homology CDS 1784496 1786730 . + 0 ID=cds-WP_114867061.1;Parent=gene-LPH39_RS07150;Dbxref=Genbank:WP_114867061.1;Name=WP_114867061.1;Ontology_term=GO:0006120,GO:0050136;gbkey=CDS;gene=nuoG;go_function=NADH dehydrogenase (quinone) activity|0050136||IEA;go_process=mitochondrial electron transport%2C NADH to ubiquinone|0006120||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851037.1;locus_tag=LPH39_RS07150;product=NADH-quinone oxidoreductase subunit NuoG;protein_id=WP_114867061.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1786727 1787818 . + . ID=gene-LPH39_RS07155;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=LPH39_RS07155;old_locus_tag=LPH39_07155 NZ_CP087677.1 Protein Homology CDS 1786727 1787818 . + 0 ID=cds-WP_038270800.1;Parent=gene-LPH39_RS07155;Dbxref=Genbank:WP_038270800.1;Name=WP_038270800.1;Ontology_term=GO:0016020;gbkey=CDS;gene=nuoH;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375869.1;locus_tag=LPH39_RS07155;product=NADH-quinone oxidoreductase subunit NuoH;protein_id=WP_038270800.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1787822 1788310 . + . ID=gene-LPH39_RS07160;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=LPH39_RS07160;old_locus_tag=LPH39_07160 NZ_CP087677.1 Protein Homology CDS 1787822 1788310 . + 0 ID=cds-WP_038270799.1;Parent=gene-LPH39_RS07160;Dbxref=Genbank:WP_038270799.1;Name=WP_038270799.1;Ontology_term=GO:0016651,GO:0051539;gbkey=CDS;gene=nuoI;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927506.1;locus_tag=LPH39_RS07160;product=NADH-quinone oxidoreductase subunit NuoI;protein_id=WP_038270799.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1788318 1788980 . + . ID=gene-LPH39_RS07165;Name=LPH39_RS07165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07165;old_locus_tag=LPH39_07165 NZ_CP087677.1 Protein Homology CDS 1788318 1788980 . + 0 ID=cds-WP_038270860.1;Parent=gene-LPH39_RS07165;Dbxref=Genbank:WP_038270860.1;Name=WP_038270860.1;Ontology_term=GO:0008137;gbkey=CDS;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085294.1;locus_tag=LPH39_RS07165;product=NADH-quinone oxidoreductase subunit J;protein_id=WP_038270860.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1788977 1789282 . + . ID=gene-LPH39_RS07170;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=LPH39_RS07170;old_locus_tag=LPH39_07170 NZ_CP087677.1 Protein Homology CDS 1788977 1789282 . + 0 ID=cds-WP_038270798.1;Parent=gene-LPH39_RS07170;Dbxref=Genbank:WP_038270798.1;Name=WP_038270798.1;gbkey=CDS;gene=nuoK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450557.1;locus_tag=LPH39_RS07170;product=NADH-quinone oxidoreductase subunit NuoK;protein_id=WP_038270798.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1789290 1791437 . + . ID=gene-LPH39_RS07175;Name=nuoL;gbkey=Gene;gene=nuoL;gene_biotype=protein_coding;locus_tag=LPH39_RS07175;old_locus_tag=LPH39_07175 NZ_CP087677.1 Protein Homology CDS 1789290 1791437 . + 0 ID=cds-WP_038270797.1;Parent=gene-LPH39_RS07175;Dbxref=Genbank:WP_038270797.1;Name=WP_038270797.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoL;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485563.1;locus_tag=LPH39_RS07175;product=NADH-quinone oxidoreductase subunit L;protein_id=WP_038270797.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1791459 1792964 . + . ID=gene-LPH39_RS07180;Name=LPH39_RS07180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07180;old_locus_tag=LPH39_07180 NZ_CP087677.1 Protein Homology CDS 1791459 1792964 . + 0 ID=cds-WP_038270796.1;Parent=gene-LPH39_RS07180;Dbxref=Genbank:WP_038270796.1;Name=WP_038270796.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300411.1;locus_tag=LPH39_RS07180;product=NADH-quinone oxidoreductase subunit M;protein_id=WP_038270796.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1792999 1794456 . + . ID=gene-LPH39_RS07185;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=LPH39_RS07185;old_locus_tag=LPH39_07185 NZ_CP087677.1 Protein Homology CDS 1792999 1794456 . + 0 ID=cds-WP_038270795.1;Parent=gene-LPH39_RS07185;Dbxref=Genbank:WP_038270795.1;Name=WP_038270795.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoN;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485567.1;locus_tag=LPH39_RS07185;product=NADH-quinone oxidoreductase subunit NuoN;protein_id=WP_038270795.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1794816 1795556 . - . ID=gene-LPH39_RS07190;Name=phbB;gbkey=Gene;gene=phbB;gene_biotype=protein_coding;locus_tag=LPH39_RS07190;old_locus_tag=LPH39_07190 NZ_CP087677.1 Protein Homology CDS 1794816 1795556 . - 0 ID=cds-WP_038270793.1;Parent=gene-LPH39_RS07190;Dbxref=Genbank:WP_038270793.1;Name=WP_038270793.1;Ontology_term=GO:0042619,GO:0018454;gbkey=CDS;gene=phbB;go_function=acetoacetyl-CoA reductase activity|0018454||IEA;go_process=poly-hydroxybutyrate biosynthetic process|0042619||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085289.1;locus_tag=LPH39_RS07190;product=acetoacetyl-CoA reductase;protein_id=WP_038270793.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1795615 1796946 . - . ID=gene-LPH39_RS07195;Name=LPH39_RS07195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07195;old_locus_tag=LPH39_07195 NZ_CP087677.1 Protein Homology CDS 1795615 1796946 . - 0 ID=cds-WP_038270792.1;Parent=gene-LPH39_RS07195;Dbxref=Genbank:WP_038270792.1;Name=WP_038270792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085288.1;locus_tag=LPH39_RS07195;product=CitMHS family transporter;protein_id=WP_038270792.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1797079 1798269 . - . ID=gene-LPH39_RS07200;Name=LPH39_RS07200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07200;old_locus_tag=LPH39_07200 NZ_CP087677.1 Protein Homology CDS 1797079 1798269 . - 0 ID=cds-WP_038270791.1;Parent=gene-LPH39_RS07200;Dbxref=Genbank:WP_038270791.1;Name=WP_038270791.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852491.1;locus_tag=LPH39_RS07200;product=OprO/OprP family phosphate-selective porin;protein_id=WP_038270791.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1798475 1799164 . + . ID=gene-LPH39_RS07205;Name=LPH39_RS07205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07205;old_locus_tag=LPH39_07205 NZ_CP087677.1 Protein Homology CDS 1798475 1799164 . + 0 ID=cds-WP_038270790.1;Parent=gene-LPH39_RS07205;Dbxref=Genbank:WP_038270790.1;Name=WP_038270790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085286.1;locus_tag=LPH39_RS07205;product=response regulator transcription factor;protein_id=WP_038270790.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1799154 1800536 . + . ID=gene-LPH39_RS07210;Name=LPH39_RS07210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07210;old_locus_tag=LPH39_07210 NZ_CP087677.1 Protein Homology CDS 1799154 1800536 . + 0 ID=cds-WP_038270789.1;Parent=gene-LPH39_RS07210;Dbxref=Genbank:WP_038270789.1;Name=WP_038270789.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852489.1;locus_tag=LPH39_RS07210;product=sensor histidine kinase;protein_id=WP_038270789.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1800533 1801576 . + . ID=gene-LPH39_RS07215;Name=LPH39_RS07215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07215;old_locus_tag=LPH39_07215 NZ_CP087677.1 Protein Homology CDS 1800533 1801576 . + 0 ID=cds-WP_171898041.1;Parent=gene-LPH39_RS07215;Dbxref=Genbank:WP_171898041.1;Name=WP_171898041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157495.1;locus_tag=LPH39_RS07215;product=ABC transporter substrate-binding protein;protein_id=WP_171898041.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1802284 1802916 . + . ID=gene-LPH39_RS07220;Name=LPH39_RS07220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07220;old_locus_tag=LPH39_07220 NZ_CP087677.1 Protein Homology CDS 1802284 1802916 . + 0 ID=cds-WP_038270788.1;Parent=gene-LPH39_RS07220;Dbxref=Genbank:WP_038270788.1;Name=WP_038270788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097569.1;locus_tag=LPH39_RS07220;product=response regulator transcription factor;protein_id=WP_038270788.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1802959 1804596 . - . ID=gene-LPH39_RS07225;Name=LPH39_RS07225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07225;old_locus_tag=LPH39_07225 NZ_CP087677.1 Protein Homology CDS 1802959 1804596 . - 0 ID=cds-WP_081755415.1;Parent=gene-LPH39_RS07225;Dbxref=Genbank:WP_081755415.1;Name=WP_081755415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165838.1;locus_tag=LPH39_RS07225;product=PAS-domain containing protein;protein_id=WP_081755415.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1805425 1806594 . - . ID=gene-LPH39_RS07230;Name=LPH39_RS07230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07230;old_locus_tag=LPH39_07230 NZ_CP087677.1 Protein Homology CDS 1805425 1806594 . - 0 ID=cds-WP_038270786.1;Parent=gene-LPH39_RS07230;Dbxref=Genbank:WP_038270786.1;Name=WP_038270786.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087915.1;locus_tag=LPH39_RS07230;product=porin;protein_id=WP_038270786.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1806891 1808231 . + . ID=gene-LPH39_RS07235;Name=LPH39_RS07235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07235;old_locus_tag=LPH39_07235 NZ_CP087677.1 Protein Homology CDS 1806891 1808231 . + 0 ID=cds-WP_038270785.1;Parent=gene-LPH39_RS07235;Dbxref=Genbank:WP_038270785.1;Name=WP_038270785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087914.1;locus_tag=LPH39_RS07235;product=dicarboxylate/amino acid:cation symporter;protein_id=WP_038270785.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1808396 1810690 . + . ID=gene-LPH39_RS07240;Name=LPH39_RS07240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07240;old_locus_tag=LPH39_07240 NZ_CP087677.1 Protein Homology CDS 1808396 1810690 . + 0 ID=cds-WP_038270784.1;Parent=gene-LPH39_RS07240;Dbxref=Genbank:WP_038270784.1;Name=WP_038270784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893496.1;locus_tag=LPH39_RS07240;product=NADP-dependent malic enzyme;protein_id=WP_038270784.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1810934 1812838 . - . ID=gene-LPH39_RS07245;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=LPH39_RS07245;old_locus_tag=LPH39_07245 NZ_CP087677.1 Protein Homology CDS 1810934 1812838 . - 0 ID=cds-WP_038270783.1;Parent=gene-LPH39_RS07245;Dbxref=Genbank:WP_038270783.1;Name=WP_038270783.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887,GO:0051082;gbkey=CDS;gene=htpG;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303855.1;locus_tag=LPH39_RS07245;product=molecular chaperone HtpG;protein_id=WP_038270783.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1813012 1813641 . + . ID=gene-LPH39_RS07250;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=LPH39_RS07250;old_locus_tag=LPH39_07250 NZ_CP087677.1 Protein Homology CDS 1813012 1813641 . + 0 ID=cds-WP_038270857.1;Parent=gene-LPH39_RS07250;Dbxref=Genbank:WP_038270857.1;Name=WP_038270857.1;Ontology_term=GO:0031167,GO:0052913;gbkey=CDS;gene=rsmD;go_function=16S rRNA (guanine(966)-N(2))-methyltransferase activity|0052913||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852480.1;locus_tag=LPH39_RS07250;product=16S rRNA (guanine(966)-N(2))-methyltransferase RsmD;protein_id=WP_038270857.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1813638 1814126 . + . ID=gene-LPH39_RS07255;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=LPH39_RS07255;old_locus_tag=LPH39_07255 NZ_CP087677.1 Protein Homology CDS 1813638 1814126 . + 0 ID=cds-WP_038270782.1;Parent=gene-LPH39_RS07255;Dbxref=Genbank:WP_038270782.1;Name=WP_038270782.1;Ontology_term=GO:0015937,GO:0004595;gbkey=CDS;gene=coaD;go_function=pantetheine-phosphate adenylyltransferase activity|0004595||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005409091.1;locus_tag=LPH39_RS07255;product=pantetheine-phosphate adenylyltransferase;protein_id=WP_038270782.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1814175 1814669 . + . ID=gene-LPH39_RS07260;Name=LPH39_RS07260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07260;old_locus_tag=LPH39_07260 NZ_CP087677.1 Protein Homology CDS 1814175 1814669 . + 0 ID=cds-WP_038270781.1;Parent=gene-LPH39_RS07260;Dbxref=Genbank:WP_038270781.1;Name=WP_038270781.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157277.1;locus_tag=LPH39_RS07260;product=hypothetical protein;protein_id=WP_038270781.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1814832 1815116 . + . ID=gene-LPH39_RS07265;Name=LPH39_RS07265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07265;old_locus_tag=LPH39_07265 NZ_CP087677.1 Protein Homology CDS 1814832 1815116 . + 0 ID=cds-WP_038270856.1;Parent=gene-LPH39_RS07265;Dbxref=Genbank:WP_038270856.1;Name=WP_038270856.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851038.1;locus_tag=LPH39_RS07265;product=YfhL family 4Fe-4S dicluster ferredoxin;protein_id=WP_038270856.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1815224 1816873 . + . ID=gene-LPH39_RS07270;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=pseudogene;locus_tag=LPH39_RS07270;old_locus_tag=LPH39_07270;partial=true;pseudo=true;start_range=.,1815224 NZ_CP087677.1 Protein Homology CDS 1815224 1816873 . + 0 ID=cds-LPH39_RS07270;Parent=gene-LPH39_RS07270;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006750;gbkey=CDS;gene=ggt;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157276.1;locus_tag=LPH39_RS07270;partial=true;product=gamma-glutamyltransferase;pseudo=true;start_range=.,1815224;transl_table=11 NZ_CP087677.1 RefSeq gene 1817870 1819528 . + . ID=gene-LPH39_RS07275;Name=LPH39_RS07275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07275;old_locus_tag=LPH39_07275 NZ_CP087677.1 Protein Homology CDS 1817870 1819528 . + 0 ID=cds-WP_038270779.1;Parent=gene-LPH39_RS07275;Dbxref=Genbank:WP_038270779.1;Name=WP_038270779.1;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382441.1;locus_tag=LPH39_RS07275;product=GGDEF domain-containing protein;protein_id=WP_038270779.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1819628 1820431 . - . ID=gene-LPH39_RS07280;Name=LPH39_RS07280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07280;old_locus_tag=LPH39_07280 NZ_CP087677.1 Protein Homology CDS 1819628 1820431 . - 0 ID=cds-WP_230428269.1;Parent=gene-LPH39_RS07280;Dbxref=Genbank:WP_230428269.1;Name=WP_230428269.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269661.1;locus_tag=LPH39_RS07280;product=M23 family metallopeptidase;protein_id=WP_230428269.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1820479 1821828 . - . ID=gene-LPH39_RS07285;Name=LPH39_RS07285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07285;old_locus_tag=LPH39_07285 NZ_CP087677.1 Protein Homology CDS 1820479 1821828 . - 0 ID=cds-WP_038270776.1;Parent=gene-LPH39_RS07285;Dbxref=Genbank:WP_038270776.1;Name=WP_038270776.1;Ontology_term=GO:0016812;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in cyclic amides|0016812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302579.1;locus_tag=LPH39_RS07285;product=dihydroorotase;protein_id=WP_038270776.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1821825 1822088 . - . ID=gene-LPH39_RS07290;Name=yidD;gbkey=Gene;gene=yidD;gene_biotype=protein_coding;locus_tag=LPH39_RS07290;old_locus_tag=LPH39_07290 NZ_CP087677.1 Protein Homology CDS 1821825 1822088 . - 0 ID=cds-WP_038270775.1;Parent=gene-LPH39_RS07290;Dbxref=Genbank:WP_038270775.1;Name=WP_038270775.1;gbkey=CDS;gene=yidD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893508.1;locus_tag=LPH39_RS07290;product=membrane protein insertion efficiency factor YidD;protein_id=WP_038270775.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1822196 1823134 . + . ID=gene-LPH39_RS07295;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=LPH39_RS07295;old_locus_tag=LPH39_07295 NZ_CP087677.1 Protein Homology CDS 1822196 1823134 . + 0 ID=cds-WP_038270774.1;Parent=gene-LPH39_RS07295;Dbxref=Genbank:WP_038270774.1;Name=WP_038270774.1;Ontology_term=GO:0006355,GO:0019899;gbkey=CDS;gene=dksA;go_function=enzyme binding|0019899||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085263.1;locus_tag=LPH39_RS07295;product=RNA polymerase-binding protein DksA;protein_id=WP_038270774.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1823317 1824363 . + . ID=gene-LPH39_RS07300;Name=LPH39_RS07300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07300;old_locus_tag=LPH39_07300 NZ_CP087677.1 Protein Homology CDS 1823317 1824363 . + 0 ID=cds-WP_038270773.1;Parent=gene-LPH39_RS07300;Dbxref=Genbank:WP_038270773.1;Name=WP_038270773.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852338.1;locus_tag=LPH39_RS07300;product=alpha/beta fold hydrolase;protein_id=WP_038270773.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1824915 1825064 . + . ID=gene-LPH39_RS07305;Name=LPH39_RS07305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07305;old_locus_tag=LPH39_07305 NZ_CP087677.1 GeneMarkS-2+ CDS 1824915 1825064 . + 0 ID=cds-WP_230428153.1;Parent=gene-LPH39_RS07305;Dbxref=Genbank:WP_230428153.1;Name=WP_230428153.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07305;product=hypothetical protein;protein_id=WP_230428153.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1825197 1825595 . + . ID=gene-LPH39_RS07310;Name=LPH39_RS07310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07310;old_locus_tag=LPH39_07310 NZ_CP087677.1 GeneMarkS-2+ CDS 1825197 1825595 . + 0 ID=cds-WP_051482281.1;Parent=gene-LPH39_RS07310;Dbxref=Genbank:WP_051482281.1;Name=WP_051482281.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07310;product=hypothetical protein;protein_id=WP_051482281.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1825708 1825863 . + . ID=gene-LPH39_RS07315;Name=LPH39_RS07315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07315;old_locus_tag=LPH39_07315 NZ_CP087677.1 GeneMarkS-2+ CDS 1825708 1825863 . + 0 ID=cds-WP_160199325.1;Parent=gene-LPH39_RS07315;Dbxref=Genbank:WP_160199325.1;Name=WP_160199325.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07315;product=hypothetical protein;protein_id=WP_160199325.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1825893 1827137 . - . ID=gene-LPH39_RS07320;Name=LPH39_RS07320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07320;old_locus_tag=LPH39_07320 NZ_CP087677.1 Protein Homology CDS 1825893 1827137 . - 0 ID=cds-WP_038270772.1;Parent=gene-LPH39_RS07320;Dbxref=Genbank:WP_038270772.1;Name=WP_038270772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097573.1;locus_tag=LPH39_RS07320;product=MFS transporter;protein_id=WP_038270772.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1827134 1827574 . - . ID=gene-LPH39_RS07325;Name=LPH39_RS07325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07325;old_locus_tag=LPH39_07325 NZ_CP087677.1 Protein Homology CDS 1827134 1827574 . - 0 ID=cds-WP_038270771.1;Parent=gene-LPH39_RS07325;Dbxref=Genbank:WP_038270771.1;Name=WP_038270771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087898.1;locus_tag=LPH39_RS07325;product=SufE family protein;protein_id=WP_038270771.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1827793 1829193 . - . ID=gene-LPH39_RS07330;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=LPH39_RS07330;old_locus_tag=LPH39_07330 NZ_CP087677.1 Protein Homology CDS 1827793 1829193 . - 0 ID=cds-WP_038270770.1;Parent=gene-LPH39_RS07330;Dbxref=Genbank:WP_038270770.1;Name=WP_038270770.1;Ontology_term=GO:0006423,GO:0004817,GO:0005737;gbkey=CDS;gene=cysS;go_component=cytoplasm|0005737||IEA;go_function=cysteine-tRNA ligase activity|0004817||IEA;go_process=cysteinyl-tRNA aminoacylation|0006423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852341.1;locus_tag=LPH39_RS07330;product=cysteine--tRNA ligase;protein_id=WP_038270770.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1829350 1829892 . + . ID=gene-LPH39_RS07335;Name=LPH39_RS07335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07335;old_locus_tag=LPH39_07335 NZ_CP087677.1 Protein Homology CDS 1829350 1829892 . + 0 ID=cds-WP_038270769.1;Parent=gene-LPH39_RS07335;Dbxref=Genbank:WP_038270769.1;Name=WP_038270769.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607601.1;locus_tag=LPH39_RS07335;product=hypothetical protein;protein_id=WP_038270769.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1830270 1831280 . + . ID=gene-LPH39_RS07340;Name=LPH39_RS07340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07340;old_locus_tag=LPH39_07340 NZ_CP087677.1 Protein Homology CDS 1830270 1831280 . + 0 ID=cds-WP_114867062.1;Parent=gene-LPH39_RS07340;Dbxref=Genbank:WP_114867062.1;Name=WP_114867062.1;Ontology_term=GO:0042450,GO:0016597,GO:0043857;gbkey=CDS;go_function=amino acid binding|0016597||IEA,N-acetylornithine carbamoyltransferase activity|0043857||IEA;go_process=arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087894.1;locus_tag=LPH39_RS07340;product=N-acetylornithine carbamoyltransferase;protein_id=WP_114867062.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1831309 1832514 . + . ID=gene-LPH39_RS07345;Name=LPH39_RS07345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07345;old_locus_tag=LPH39_07345 NZ_CP087677.1 Protein Homology CDS 1831309 1832514 . + 0 ID=cds-WP_038270767.1;Parent=gene-LPH39_RS07345;Dbxref=Genbank:WP_038270767.1;Name=WP_038270767.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097576.1;locus_tag=LPH39_RS07345;product=argininosuccinate synthase;protein_id=WP_038270767.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1833262 1834353 . + . ID=gene-LPH39_RS07350;Name=LPH39_RS07350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07350;old_locus_tag=LPH39_07350 NZ_CP087677.1 Protein Homology CDS 1833262 1834353 . + 0 ID=cds-WP_038270765.1;Parent=gene-LPH39_RS07350;Dbxref=Genbank:WP_038270765.1;Name=WP_038270765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852343.1;locus_tag=LPH39_RS07350;product=acetylornithine deacetylase;protein_id=WP_038270765.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1834418 1835734 . + . ID=gene-LPH39_RS07355;Name=LPH39_RS07355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07355;old_locus_tag=LPH39_07355 NZ_CP087677.1 Protein Homology CDS 1834418 1835734 . + 0 ID=cds-WP_038270764.1;Parent=gene-LPH39_RS07355;Dbxref=Genbank:WP_038270764.1;Name=WP_038270764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085241.1;locus_tag=LPH39_RS07355;product=acetylglutamate kinase;protein_id=WP_038270764.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1835763 1835963 . - . ID=gene-LPH39_RS07360;Name=LPH39_RS07360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07360;old_locus_tag=LPH39_07360 NZ_CP087677.1 GeneMarkS-2+ CDS 1835763 1835963 . - 0 ID=cds-WP_152536591.1;Parent=gene-LPH39_RS07360;Dbxref=Genbank:WP_152536591.1;Name=WP_152536591.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07360;product=hypothetical protein;protein_id=WP_152536591.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1836045 1837001 . + . ID=gene-LPH39_RS07365;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=LPH39_RS07365;old_locus_tag=LPH39_07365 NZ_CP087677.1 Protein Homology CDS 1836045 1837001 . + 0 ID=cds-WP_038270762.1;Parent=gene-LPH39_RS07365;Dbxref=Genbank:WP_038270762.1;Name=WP_038270762.1;Ontology_term=GO:0006592,GO:0003942;gbkey=CDS;gene=argC;go_function=N-acetyl-gamma-glutamyl-phosphate reductase activity|0003942||IEA;go_process=ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006378490.1;locus_tag=LPH39_RS07365;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=WP_038270762.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1837078 1838406 . + . ID=gene-LPH39_RS07370;Name=argH;gbkey=Gene;gene=argH;gene_biotype=protein_coding;locus_tag=LPH39_RS07370;old_locus_tag=LPH39_07370 NZ_CP087677.1 Protein Homology CDS 1837078 1838406 . + 0 ID=cds-WP_038270761.1;Parent=gene-LPH39_RS07370;Dbxref=Genbank:WP_038270761.1;Name=WP_038270761.1;Ontology_term=GO:0042450,GO:0004056;gbkey=CDS;gene=argH;go_function=argininosuccinate lyase activity|0004056||IEA;go_process=arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087890.1;locus_tag=LPH39_RS07370;product=argininosuccinate lyase;protein_id=WP_038270761.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1838719 1838868 . + . ID=gene-LPH39_RS07375;Name=LPH39_RS07375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07375;old_locus_tag=LPH39_07375 NZ_CP087677.1 GeneMarkS-2+ CDS 1838719 1838868 . + 0 ID=cds-WP_160165150.1;Parent=gene-LPH39_RS07375;Dbxref=Genbank:WP_160165150.1;Name=WP_160165150.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07375;product=hypothetical protein;protein_id=WP_160165150.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1838881 1840041 . + . ID=gene-LPH39_RS07380;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=LPH39_RS07380;old_locus_tag=LPH39_07380 NZ_CP087677.1 Protein Homology CDS 1838881 1840041 . + 0 ID=cds-WP_038270760.1;Parent=gene-LPH39_RS07380;Dbxref=Genbank:WP_038270760.1;Name=WP_038270760.1;Ontology_term=GO:0006561,GO:0004349;gbkey=CDS;gene=proB;go_function=glutamate 5-kinase activity|0004349||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051522.1;locus_tag=LPH39_RS07380;product=glutamate 5-kinase;protein_id=WP_038270760.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1840495 1841742 . + . ID=gene-LPH39_RS07385;Name=LPH39_RS07385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07385;old_locus_tag=LPH39_07385 NZ_CP087677.1 Protein Homology CDS 1840495 1841742 . + 0 ID=cds-WP_038270853.1;Parent=gene-LPH39_RS07385;Dbxref=Genbank:WP_038270853.1;Name=WP_038270853.1;Ontology_term=GO:0006561,GO:0004350,GO:0016620;gbkey=CDS;go_function=glutamate-5-semialdehyde dehydrogenase activity|0004350||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017910533.1;locus_tag=LPH39_RS07385;product=glutamate-5-semialdehyde dehydrogenase;protein_id=WP_038270853.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1842439 1842807 . + . ID=gene-LPH39_RS07390;Name=LPH39_RS07390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07390;old_locus_tag=LPH39_07390 NZ_CP087677.1 Protein Homology CDS 1842439 1842807 . + 0 ID=cds-WP_038270759.1;Parent=gene-LPH39_RS07390;Dbxref=Genbank:WP_038270759.1;Name=WP_038270759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087886.1;locus_tag=LPH39_RS07390;product=hypothetical protein;protein_id=WP_038270759.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1843031 1843591 . + . ID=gene-LPH39_RS07395;Name=LPH39_RS07395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07395;old_locus_tag=LPH39_07395 NZ_CP087677.1 Protein Homology CDS 1843031 1843591 . + 0 ID=cds-WP_038270758.1;Parent=gene-LPH39_RS07395;Dbxref=Genbank:WP_038270758.1;Name=WP_038270758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005220837.1;locus_tag=LPH39_RS07395;product=recombinase family protein;protein_id=WP_038270758.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1843594 1846417 . + . ID=gene-LPH39_RS07400;Name=LPH39_RS07400;end_range=1846417,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS07400;old_locus_tag=LPH39_07400;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1843594 1846417 . + 0 ID=cds-LPH39_RS07400;Parent=gene-LPH39_RS07400;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=1846417,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014834018.1;locus_tag=LPH39_RS07400;partial=true;product=Tn3 family transposase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1846557 1846697 . + . ID=gene-LPH39_RS07405;Name=LPH39_RS07405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07405;old_locus_tag=LPH39_07405 NZ_CP087677.1 GeneMarkS-2+ CDS 1846557 1846697 . + 0 ID=cds-WP_160165149.1;Parent=gene-LPH39_RS07405;Dbxref=Genbank:WP_160165149.1;Name=WP_160165149.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07405;product=hypothetical protein;protein_id=WP_160165149.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1847084 1848094 . - . ID=gene-LPH39_RS07410;Name=LPH39_RS07410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07410;old_locus_tag=LPH39_07410 NZ_CP087677.1 Protein Homology CDS 1847084 1848094 . - 0 ID=cds-WP_038270757.1;Parent=gene-LPH39_RS07410;Dbxref=Genbank:WP_038270757.1;Name=WP_038270757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895227.1;locus_tag=LPH39_RS07410;product=serine protease;protein_id=WP_038270757.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1849330 1850721 . + . ID=gene-LPH39_RS07415;Name=LPH39_RS07415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07415;old_locus_tag=LPH39_07415 NZ_CP087677.1 Protein Homology CDS 1849330 1850721 . + 0 ID=cds-WP_051482280.1;Parent=gene-LPH39_RS07415;Dbxref=Genbank:WP_051482280.1;Name=WP_051482280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160583.1;locus_tag=LPH39_RS07415;product=right-handed parallel beta-helix repeat-containing protein;protein_id=WP_051482280.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1850794 1851456 . - . ID=gene-LPH39_RS07420;Name=LPH39_RS07420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07420;old_locus_tag=LPH39_07420 NZ_CP087677.1 Protein Homology CDS 1850794 1851456 . - 0 ID=cds-WP_268746643.1;Parent=gene-LPH39_RS07420;Dbxref=Genbank:WP_268746643.1;Name=WP_268746643.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012464.2;locus_tag=LPH39_RS07420;product=recombinase family protein;protein_id=WP_268746643.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1851543 1851746 . - . ID=gene-LPH39_RS07425;Name=LPH39_RS07425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07425;old_locus_tag=LPH39_07425 NZ_CP087677.1 Protein Homology CDS 1851543 1851746 . - 0 ID=cds-WP_200866186.1;Parent=gene-LPH39_RS07425;Dbxref=Genbank:WP_200866186.1;Name=WP_200866186.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016876.2;locus_tag=LPH39_RS07425;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_200866186.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1851743 1851937 . - . ID=gene-LPH39_RS07430;Name=LPH39_RS07430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07430;old_locus_tag=LPH39_07430 NZ_CP087677.1 Protein Homology CDS 1851743 1851937 . - 0 ID=cds-WP_038270756.1;Parent=gene-LPH39_RS07430;Dbxref=Genbank:WP_038270756.1;Name=WP_038270756.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408511.1;locus_tag=LPH39_RS07430;product=hypothetical protein;protein_id=WP_038270756.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1852181 1852576 . + . ID=gene-LPH39_RS07435;Name=LPH39_RS07435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07435;old_locus_tag=LPH39_07435 NZ_CP087677.1 Protein Homology CDS 1852181 1852576 . + 0 ID=cds-WP_230428271.1;Parent=gene-LPH39_RS07435;Dbxref=Genbank:WP_230428271.1;Name=WP_230428271.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025079.2;locus_tag=LPH39_RS07435;product=DUF4158 domain-containing protein;protein_id=WP_230428271.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1852705 1853085 . + . ID=gene-LPH39_RS07440;Name=LPH39_RS07440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07440;old_locus_tag=LPH39_07440 NZ_CP087677.1 GeneMarkS-2+ CDS 1852705 1853085 . + 0 ID=cds-WP_038270750.1;Parent=gene-LPH39_RS07440;Dbxref=Genbank:WP_038270750.1;Name=WP_038270750.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07440;product=hypothetical protein;protein_id=WP_038270750.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1853219 1853302 . + . ID=gene-LPH39_RS07445;Name=LPH39_RS07445;end_range=1853302,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS07445;old_locus_tag=LPH39_07445;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1853219 1853302 . + 0 ID=cds-LPH39_RS07445;Parent=gene-LPH39_RS07445;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1853302,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017757.2;locus_tag=LPH39_RS07445;partial=true;product=type II toxin-antitoxin system RelE/ParE family toxin;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1853414 1853695 . + . ID=gene-LPH39_RS07450;Name=LPH39_RS07450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07450;old_locus_tag=LPH39_07450 NZ_CP087677.1 Protein Homology CDS 1853414 1853695 . + 0 ID=cds-WP_038270748.1;Parent=gene-LPH39_RS07450;Dbxref=Genbank:WP_038270748.1;Name=WP_038270748.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091355.1;locus_tag=LPH39_RS07450;product=XRE family transcriptional regulator;protein_id=WP_038270748.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1853965 1855094 . - . ID=gene-LPH39_RS07455;Name=LPH39_RS07455;end_range=1855094,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS07455;old_locus_tag=LPH39_07455;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1853965 1855094 . - 0 ID=cds-LPH39_RS07455;Parent=gene-LPH39_RS07455;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1855094,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337797.1;locus_tag=LPH39_RS07455;partial=true;product=DUF5710 domain-containing protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1855270 1856107 . + . ID=gene-LPH39_RS07460;Name=LPH39_RS07460;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS07460;old_locus_tag=LPH39_07460;partial=true;pseudo=true;start_range=.,1855270 NZ_CP087677.1 Protein Homology CDS 1855270 1856107 . + 0 ID=cds-LPH39_RS07460;Parent=gene-LPH39_RS07460;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161248.1;locus_tag=LPH39_RS07460;partial=true;product=VirB8/TrbF family protein;pseudo=true;start_range=.,1855270;transl_table=11 NZ_CP087677.1 RefSeq gene 1856123 1857013 . + . ID=gene-LPH39_RS07465;Name=trbG;gbkey=Gene;gene=trbG;gene_biotype=protein_coding;locus_tag=LPH39_RS07465;old_locus_tag=LPH39_07465 NZ_CP087677.1 Protein Homology CDS 1856123 1857013 . + 0 ID=cds-WP_038270744.1;Parent=gene-LPH39_RS07465;Dbxref=Genbank:WP_038270744.1;Name=WP_038270744.1;Ontology_term=GO:0009291;gbkey=CDS;gene=trbG;go_process=unidirectional conjugation|0009291||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086695.1;locus_tag=LPH39_RS07465;product=P-type conjugative transfer protein TrbG;protein_id=WP_038270744.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1857133 1857413 . + . ID=gene-LPH39_RS07470;Name=LPH39_RS07470;end_range=1857413,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS07470;old_locus_tag=LPH39_07470;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1857133 1857413 . + 0 ID=cds-LPH39_RS07470;Parent=gene-LPH39_RS07470;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1857413,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018934.2;locus_tag=LPH39_RS07470;partial=true;product=conjugal transfer protein TrbH;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1857451 1858305 . + . ID=gene-LPH39_RS07475;Name=LPH39_RS07475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS07475;old_locus_tag=LPH39_07475;partial=true;pseudo=true;start_range=.,1857451 NZ_CP087677.1 Protein Homology CDS 1857451 1858305 . + 0 ID=cds-LPH39_RS07475;Parent=gene-LPH39_RS07475;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091515.1;locus_tag=LPH39_RS07475;partial=true;product=conjugal transfer protein TrbI;pseudo=true;start_range=.,1857451;transl_table=11 NZ_CP087677.1 RefSeq gene 1858324 1859097 . + . ID=gene-LPH39_RS07480;Name=trbJ;gbkey=Gene;gene=trbJ;gene_biotype=protein_coding;locus_tag=LPH39_RS07480;old_locus_tag=LPH39_07480 NZ_CP087677.1 Protein Homology CDS 1858324 1859097 . + 0 ID=cds-WP_038270743.1;Parent=gene-LPH39_RS07480;Dbxref=Genbank:WP_038270743.1;Name=WP_038270743.1;gbkey=CDS;gene=trbJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086702.1;locus_tag=LPH39_RS07480;product=P-type conjugative transfer protein TrbJ;protein_id=WP_038270743.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1859114 1859350 . + . ID=gene-LPH39_RS07485;Name=LPH39_RS07485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07485;old_locus_tag=LPH39_07485 NZ_CP087677.1 Protein Homology CDS 1859114 1859350 . + 0 ID=cds-WP_081755410.1;Parent=gene-LPH39_RS07485;Dbxref=Genbank:WP_081755410.1;Name=WP_081755410.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033894.1;locus_tag=LPH39_RS07485;product=EexN family lipoprotein;protein_id=WP_081755410.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1859367 1860815 . + . ID=gene-LPH39_RS07490;Name=trbL;gbkey=Gene;gene=trbL;gene_biotype=protein_coding;locus_tag=LPH39_RS07490;old_locus_tag=LPH39_07490 NZ_CP087677.1 Protein Homology CDS 1859367 1860815 . + 0 ID=cds-WP_230428155.1;Parent=gene-LPH39_RS07490;Dbxref=Genbank:WP_230428155.1;Name=WP_230428155.1;Ontology_term=GO:0009291;gbkey=CDS;gene=trbL;go_process=unidirectional conjugation|0009291||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894502.1;locus_tag=LPH39_RS07490;product=P-type conjugative transfer protein TrbL;protein_id=WP_230428155.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1860851 1861072 . + . ID=gene-LPH39_RS07495;Name=LPH39_RS07495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07495;old_locus_tag=LPH39_07495 NZ_CP087677.1 GeneMarkS-2+ CDS 1860851 1861072 . + 0 ID=cds-WP_038270739.1;Parent=gene-LPH39_RS07495;Dbxref=Genbank:WP_038270739.1;Name=WP_038270739.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07495;product=hypothetical protein;protein_id=WP_038270739.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1861074 1861682 . + . ID=gene-LPH39_RS07500;Name=LPH39_RS07500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07500;old_locus_tag=LPH39_07500 NZ_CP087677.1 Protein Homology CDS 1861074 1861682 . + 0 ID=cds-WP_038270737.1;Parent=gene-LPH39_RS07500;Dbxref=Genbank:WP_038270737.1;Name=WP_038270737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895232.1;locus_tag=LPH39_RS07500;product=transglycosylase SLT domain-containing protein;protein_id=WP_038270737.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1861692 1863176 . - . ID=gene-LPH39_RS07505;Name=LPH39_RS07505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07505;old_locus_tag=LPH39_07505 NZ_CP087677.1 Protein Homology CDS 1861692 1863176 . - 0 ID=cds-WP_081755409.1;Parent=gene-LPH39_RS07505;Dbxref=Genbank:WP_081755409.1;Name=WP_081755409.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: protein motif:HMM:NF024842.2;locus_tag=LPH39_RS07505;product=FAD-dependent oxidoreductase;protein_id=WP_081755409.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1863173 1863895 . - . ID=gene-LPH39_RS07510;Name=LPH39_RS07510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07510;old_locus_tag=LPH39_07510 NZ_CP087677.1 Protein Homology CDS 1863173 1863895 . - 0 ID=cds-WP_230428156.1;Parent=gene-LPH39_RS07510;Dbxref=Genbank:WP_230428156.1;Name=WP_230428156.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997681.1;locus_tag=LPH39_RS07510;product=cupin domain-containing protein;protein_id=WP_230428156.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1863912 1864253 . - . ID=gene-LPH39_RS07515;Name=LPH39_RS07515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07515;old_locus_tag=LPH39_07515 NZ_CP087677.1 Protein Homology CDS 1863912 1864253 . - 0 ID=cds-WP_200866190.1;Parent=gene-LPH39_RS07515;Dbxref=Genbank:WP_200866190.1;Name=WP_200866190.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997683.1;locus_tag=LPH39_RS07515;product=carboxymuconolactone decarboxylase family protein;protein_id=WP_200866190.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1864369 1864902 . - . ID=gene-LPH39_RS07520;Name=LPH39_RS07520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07520;old_locus_tag=LPH39_07520 NZ_CP087677.1 Protein Homology CDS 1864369 1864902 . - 0 ID=cds-WP_038270735.1;Parent=gene-LPH39_RS07520;Dbxref=Genbank:WP_038270735.1;Name=WP_038270735.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014608.2;locus_tag=LPH39_RS07520;product=OsmC family protein;protein_id=WP_038270735.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1864899 1865192 . - . ID=gene-LPH39_RS07525;Name=LPH39_RS07525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07525;old_locus_tag=LPH39_07525 NZ_CP087677.1 GeneMarkS-2+ CDS 1864899 1865192 . - 0 ID=cds-WP_200866185.1;Parent=gene-LPH39_RS07525;Dbxref=Genbank:WP_200866185.1;Name=WP_200866185.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07525;product=hypothetical protein;protein_id=WP_200866185.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1865258 1866031 . - . ID=gene-LPH39_RS07530;Name=LPH39_RS07530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07530;old_locus_tag=LPH39_07530 NZ_CP087677.1 Protein Homology CDS 1865258 1866031 . - 0 ID=cds-WP_038270733.1;Parent=gene-LPH39_RS07530;Dbxref=Genbank:WP_038270733.1;Name=WP_038270733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020203121.1;locus_tag=LPH39_RS07530;product=SDR family oxidoreductase;protein_id=WP_038270733.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1866229 1867146 . + . ID=gene-LPH39_RS07535;Name=gcvA;gbkey=Gene;gene=gcvA;gene_biotype=protein_coding;locus_tag=LPH39_RS07535;old_locus_tag=LPH39_07535 NZ_CP087677.1 Protein Homology CDS 1866229 1867146 . + 0 ID=cds-WP_038270732.1;Parent=gene-LPH39_RS07535;Dbxref=Genbank:WP_038270732.1;Name=WP_038270732.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=gcvA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020203122.1;locus_tag=LPH39_RS07535;product=transcriptional regulator GcvA;protein_id=WP_038270732.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1867174 1867485 . - . ID=gene-LPH39_RS07540;Name=LPH39_RS07540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07540;old_locus_tag=LPH39_07540 NZ_CP087677.1 Protein Homology CDS 1867174 1867485 . - 0 ID=cds-WP_038270731.1;Parent=gene-LPH39_RS07540;Dbxref=Genbank:WP_038270731.1;Name=WP_038270731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850413.1;locus_tag=LPH39_RS07540;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_038270731.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1867482 1867733 . - . ID=gene-LPH39_RS07545;Name=LPH39_RS07545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07545;old_locus_tag=LPH39_07545 NZ_CP087677.1 Protein Homology CDS 1867482 1867733 . - 0 ID=cds-WP_038270730.1;Parent=gene-LPH39_RS07545;Dbxref=Genbank:WP_038270730.1;Name=WP_038270730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004167341.1;locus_tag=LPH39_RS07545;product=antitoxin;protein_id=WP_038270730.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1867956 1868549 . + . ID=gene-LPH39_RS07550;Name=LPH39_RS07550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07550;old_locus_tag=LPH39_07550 NZ_CP087677.1 Protein Homology CDS 1867956 1868549 . + 0 ID=cds-WP_038270729.1;Parent=gene-LPH39_RS07550;Dbxref=Genbank:WP_038270729.1;Name=WP_038270729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012435588.1;locus_tag=LPH39_RS07550;product=recombinase family protein;protein_id=WP_038270729.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1868546 1869857 . + . ID=gene-LPH39_RS07555;Name=LPH39_RS07555;end_range=1869857,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS07555;old_locus_tag=LPH39_07555;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1868546 1869857 . + 0 ID=cds-LPH39_RS07555;Parent=gene-LPH39_RS07555;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1869857,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015060658.1;locus_tag=LPH39_RS07555;partial=true;product=DUF4158 domain-containing protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1869999 1870370 . + . ID=gene-LPH39_RS07560;Name=LPH39_RS07560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07560;old_locus_tag=LPH39_07560 NZ_CP087677.1 Protein Homology CDS 1869999 1870370 . + 0 ID=cds-WP_038270728.1;Parent=gene-LPH39_RS07560;Dbxref=Genbank:WP_038270728.1;Name=WP_038270728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019465260.1;locus_tag=LPH39_RS07560;product=TIR domain-containing protein;protein_id=WP_038270728.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1870370 1871356 . + . ID=gene-LPH39_RS07565;Name=LPH39_RS07565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07565;old_locus_tag=LPH39_07565 NZ_CP087677.1 Protein Homology CDS 1870370 1871356 . + 0 ID=cds-WP_038270726.1;Parent=gene-LPH39_RS07565;Dbxref=Genbank:WP_038270726.1;Name=WP_038270726.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011979481.1;locus_tag=LPH39_RS07565;product=caspase family protein;protein_id=WP_038270726.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1871423 1871569 . + . ID=gene-LPH39_RS07570;Name=LPH39_RS07570;end_range=1871569,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS07570;old_locus_tag=LPH39_07570;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1871423 1871569 . + 0 ID=cds-LPH39_RS07570;Parent=gene-LPH39_RS07570;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1871569,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001247892.1;locus_tag=LPH39_RS07570;partial=true;product=nucleotidyltransferase;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1871535 1872002 . + . ID=gene-LPH39_RS07575;Name=LPH39_RS07575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07575;old_locus_tag=LPH39_07575 NZ_CP087677.1 Protein Homology CDS 1871535 1872002 . + 0 ID=cds-WP_230428272.1;Parent=gene-LPH39_RS07575;Dbxref=Genbank:WP_230428272.1;Name=WP_230428272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012435588.1;locus_tag=LPH39_RS07575;product=recombinase family protein;protein_id=WP_230428272.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1872177 1872317 . - . ID=gene-LPH39_RS07580;Name=LPH39_RS07580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07580;old_locus_tag=LPH39_07580 NZ_CP087677.1 GeneMarkS-2+ CDS 1872177 1872317 . - 0 ID=cds-WP_230439231.1;Parent=gene-LPH39_RS07580;Dbxref=Genbank:WP_230439231.1;Name=WP_230439231.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07580;product=hypothetical protein;protein_id=WP_230439231.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1872418 1873029 . - . ID=gene-LPH39_RS07585;Name=LPH39_RS07585;end_range=1873029,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS07585;old_locus_tag=LPH39_07585;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1872418 1873029 . - 0 ID=cds-LPH39_RS07585;Parent=gene-LPH39_RS07585;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1873029,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894515.1;locus_tag=LPH39_RS07585;partial=true;product=toprim domain-containing protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1873375 1873875 . + . ID=gene-LPH39_RS07590;Name=LPH39_RS07590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07590;old_locus_tag=LPH39_07590 NZ_CP087677.1 Protein Homology CDS 1873375 1873875 . + 0 ID=cds-WP_038270725.1;Parent=gene-LPH39_RS07590;Dbxref=Genbank:WP_038270725.1;Name=WP_038270725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087880.1;locus_tag=LPH39_RS07590;product=hypothetical protein;protein_id=WP_038270725.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1873893 1874087 . + . ID=gene-LPH39_RS07595;Name=LPH39_RS07595;end_range=1874087,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS07595;old_locus_tag=LPH39_07595;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1873893 1874087 . + 0 ID=cds-LPH39_RS07595;Parent=gene-LPH39_RS07595;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1874087,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337617.1;locus_tag=LPH39_RS07595;partial=true;product=RTX toxin;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1874341 1874850 . + . ID=gene-LPH39_RS07600;Name=LPH39_RS07600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07600;old_locus_tag=LPH39_07600 NZ_CP087677.1 Protein Homology CDS 1874341 1874850 . + 0 ID=cds-WP_038270724.1;Parent=gene-LPH39_RS07600;Dbxref=Genbank:WP_038270724.1;Name=WP_038270724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087886.1;locus_tag=LPH39_RS07600;product=hypothetical protein;protein_id=WP_038270724.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 1874868 1875053 . + . ID=gene-LPH39_RS07605;Name=LPH39_RS07605;end_range=1875053,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS07605;old_locus_tag=LPH39_07605;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 1874868 1875053 . + 0 ID=cds-LPH39_RS07605;Parent=gene-LPH39_RS07605;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1875053,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087883.1;locus_tag=LPH39_RS07605;partial=true;product=RTX toxin;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 1875317 1875823 . + . ID=gene-LPH39_RS07610;Name=LPH39_RS07610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07610;old_locus_tag=LPH39_07610 NZ_CP087677.1 Protein Homology CDS 1875317 1875823 . + 0 ID=cds-WP_038270723.1;Parent=gene-LPH39_RS07610;Dbxref=Genbank:WP_038270723.1;Name=WP_038270723.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087886.1;locus_tag=LPH39_RS07610;product=hypothetical protein;protein_id=WP_038270723.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1875849 1880150 . + . ID=gene-LPH39_RS07615;Name=LPH39_RS07615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07615;old_locus_tag=LPH39_07615 NZ_CP087677.1 Protein Homology CDS 1875849 1880150 . + 0 ID=cds-WP_114867063.1;Parent=gene-LPH39_RS07615;Dbxref=Genbank:WP_114867063.1;Name=WP_114867063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097580.1;locus_tag=LPH39_RS07615;product=calcium-binding protein;protein_id=WP_114867063.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1880394 1880897 . - . ID=gene-LPH39_RS07620;Name=tadA;gbkey=Gene;gene=tadA;gene_biotype=protein_coding;locus_tag=LPH39_RS07620;old_locus_tag=LPH39_07620 NZ_CP087677.1 Protein Homology CDS 1880394 1880897 . - 0 ID=cds-WP_051482387.1;Parent=gene-LPH39_RS07620;Dbxref=Genbank:WP_051482387.1;Name=WP_051482387.1;Ontology_term=GO:0002100,GO:0008251,GO:0008270;gbkey=CDS;gene=tadA;go_function=tRNA-specific adenosine deaminase activity|0008251||IEA,zinc ion binding|0008270||IEA;go_process=tRNA wobble adenosine to inosine editing|0002100||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852939.1;locus_tag=LPH39_RS07620;product=tRNA adenosine(34) deaminase TadA;protein_id=WP_051482387.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1880905 1881387 . - . ID=gene-LPH39_RS07625;Name=mntR;gbkey=Gene;gene=mntR;gene_biotype=protein_coding;locus_tag=LPH39_RS07625;old_locus_tag=LPH39_07625 NZ_CP087677.1 Protein Homology CDS 1880905 1881387 . - 0 ID=cds-WP_038272949.1;Parent=gene-LPH39_RS07625;Dbxref=Genbank:WP_038272949.1;Name=WP_038272949.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0046914,GO:0046983;gbkey=CDS;gene=mntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,transition metal ion binding|0046914||IEA,protein dimerization activity|0046983||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097582.1;locus_tag=LPH39_RS07625;product=manganese-binding transcriptional regulator MntR;protein_id=WP_038272949.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1881625 1882971 . + . ID=gene-LPH39_RS07630;Name=LPH39_RS07630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07630;old_locus_tag=LPH39_07630 NZ_CP087677.1 Protein Homology CDS 1881625 1882971 . + 0 ID=cds-WP_038272931.1;Parent=gene-LPH39_RS07630;Dbxref=Genbank:WP_038272931.1;Name=WP_038272931.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097583.1;locus_tag=LPH39_RS07630;product=Nramp family divalent metal transporter;protein_id=WP_038272931.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1883903 1884550 . + . ID=gene-LPH39_RS07635;Name=LPH39_RS07635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07635;old_locus_tag=LPH39_07635 NZ_CP087677.1 Protein Homology CDS 1883903 1884550 . + 0 ID=cds-WP_051482389.1;Parent=gene-LPH39_RS07635;Dbxref=Genbank:WP_051482389.1;Name=WP_051482389.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023605.2;locus_tag=LPH39_RS07635;product=NotI family restriction endonuclease;protein_id=WP_051482389.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1884734 1885759 . + . ID=gene-LPH39_RS07640;Name=LPH39_RS07640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07640;old_locus_tag=LPH39_07640 NZ_CP087677.1 GeneMarkS-2+ CDS 1884734 1885759 . + 0 ID=cds-WP_200866218.1;Parent=gene-LPH39_RS07640;Dbxref=Genbank:WP_200866218.1;Name=WP_200866218.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07640;product=DNA adenine methylase;protein_id=WP_200866218.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1887576 1888379 . - . ID=gene-LPH39_RS07645;Name=LPH39_RS07645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07645;old_locus_tag=LPH39_07645 NZ_CP087677.1 Protein Homology CDS 1887576 1888379 . - 0 ID=cds-WP_051482390.1;Parent=gene-LPH39_RS07645;Dbxref=Genbank:WP_051482390.1;Name=WP_051482390.1;Ontology_term=GO:0016598,GO:0004057,GO:0008914;gbkey=CDS;go_function=arginyltransferase activity|0004057||IEA,leucyltransferase activity|0008914||IEA;go_process=protein arginylation|0016598||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088071.1;locus_tag=LPH39_RS07645;product=arginyltransferase;protein_id=WP_051482390.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1888961 1889452 . - . ID=gene-LPH39_RS07650;Name=LPH39_RS07650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07650;old_locus_tag=LPH39_07650 NZ_CP087677.1 Protein Homology CDS 1888961 1889452 . - 0 ID=cds-WP_038272934.1;Parent=gene-LPH39_RS07650;Dbxref=Genbank:WP_038272934.1;Name=WP_038272934.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852934.1;locus_tag=LPH39_RS07650;product=DUF2007 domain-containing protein;protein_id=WP_038272934.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1889456 1890292 . - . ID=gene-LPH39_RS07655;Name=tesB;gbkey=Gene;gene=tesB;gene_biotype=protein_coding;locus_tag=LPH39_RS07655;old_locus_tag=LPH39_07655 NZ_CP087677.1 Protein Homology CDS 1889456 1890292 . - 0 ID=cds-WP_038272936.1;Parent=gene-LPH39_RS07655;Dbxref=Genbank:WP_038272936.1;Name=WP_038272936.1;Ontology_term=GO:0006637,GO:0047617;gbkey=CDS;gene=tesB;go_function=acyl-CoA hydrolase activity|0047617||IEA;go_process=acyl-CoA metabolic process|0006637||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852933.1;locus_tag=LPH39_RS07655;product=acyl-CoA thioesterase II;protein_id=WP_038272936.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1890999 1891187 . - . ID=gene-LPH39_RS07660;Name=LPH39_RS07660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07660;old_locus_tag=LPH39_07660 NZ_CP087677.1 GeneMarkS-2+ CDS 1890999 1891187 . - 0 ID=cds-WP_038272941.1;Parent=gene-LPH39_RS07660;Dbxref=Genbank:WP_038272941.1;Name=WP_038272941.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07660;product=hypothetical protein;protein_id=WP_038272941.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1892484 1892795 . - . ID=gene-LPH39_RS07665;Name=LPH39_RS07665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07665;old_locus_tag=LPH39_07665 NZ_CP087677.1 Protein Homology CDS 1892484 1892795 . - 0 ID=cds-WP_038272945.1;Parent=gene-LPH39_RS07665;Dbxref=Genbank:WP_038272945.1;Name=WP_038272945.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382447.1;locus_tag=LPH39_RS07665;product=hypothetical protein;protein_id=WP_038272945.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1893396 1893563 . - . ID=gene-LPH39_RS07670;Name=LPH39_RS07670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07670;old_locus_tag=LPH39_07670 NZ_CP087677.1 GeneMarkS-2+ CDS 1893396 1893563 . - 0 ID=cds-WP_160199297.1;Parent=gene-LPH39_RS07670;Dbxref=Genbank:WP_160199297.1;Name=WP_160199297.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07670;product=hypothetical protein;protein_id=WP_160199297.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1893919 1894263 . - . ID=gene-LPH39_RS07675;Name=LPH39_RS07675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07675;old_locus_tag=LPH39_07675 NZ_CP087677.1 GeneMarkS-2+ CDS 1893919 1894263 . - 0 ID=cds-WP_230431734.1;Parent=gene-LPH39_RS07675;Dbxref=Genbank:WP_230431734.1;Name=WP_230431734.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07675;product=hypothetical protein;protein_id=WP_230431734.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1894277 1896958 . + . ID=gene-LPH39_RS07680;Name=LPH39_RS07680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07680;old_locus_tag=LPH39_07680 NZ_CP087677.1 Protein Homology CDS 1894277 1896958 . + 0 ID=cds-WP_230428158.1;Parent=gene-LPH39_RS07680;Dbxref=Genbank:WP_230428158.1;Name=WP_230428158.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337595.1;locus_tag=LPH39_RS07680;product=S8 family serine peptidase;protein_id=WP_230428158.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1897952 1898048 . + . ID=gene-LPH39_RS07685;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=LPH39_RS07685;old_locus_tag=LPH39_07685 NZ_CP087677.1 cmsearch SRP_RNA 1897952 1898048 . + . ID=rna-LPH39_RS07685;Parent=gene-LPH39_RS07685;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS07685;product=signal recognition particle sRNA small type NZ_CP087677.1 cmsearch exon 1897952 1898048 . + . ID=exon-LPH39_RS07685-1;Parent=rna-LPH39_RS07685;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS07685;product=signal recognition particle sRNA small type NZ_CP087677.1 RefSeq gene 1899910 1900116 . - . ID=gene-LPH39_RS07690;Name=LPH39_RS07690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07690;old_locus_tag=LPH39_07690 NZ_CP087677.1 GeneMarkS-2+ CDS 1899910 1900116 . - 0 ID=cds-WP_038272450.1;Parent=gene-LPH39_RS07690;Dbxref=Genbank:WP_038272450.1;Name=WP_038272450.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07690;product=hypothetical protein;protein_id=WP_038272450.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1900113 1902074 . - . ID=gene-LPH39_RS07695;Name=LPH39_RS07695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07695;old_locus_tag=LPH39_07695 NZ_CP087677.1 Protein Homology CDS 1900113 1902074 . - 0 ID=cds-WP_038272448.1;Parent=gene-LPH39_RS07695;Dbxref=Genbank:WP_038272448.1;Name=WP_038272448.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893548.1;locus_tag=LPH39_RS07695;product=CocE/NonD family hydrolase;protein_id=WP_038272448.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1903253 1903462 . + . ID=gene-LPH39_RS07700;Name=LPH39_RS07700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07700;old_locus_tag=LPH39_07700 NZ_CP087677.1 GeneMarkS-2+ CDS 1903253 1903462 . + 0 ID=cds-WP_038272446.1;Parent=gene-LPH39_RS07700;Dbxref=Genbank:WP_038272446.1;Name=WP_038272446.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07700;product=hypothetical protein;protein_id=WP_038272446.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1904618 1907209 . - . ID=gene-LPH39_RS07705;Name=plsB;gbkey=Gene;gene=plsB;gene_biotype=protein_coding;locus_tag=LPH39_RS07705;old_locus_tag=LPH39_07705 NZ_CP087677.1 Protein Homology CDS 1904618 1907209 . - 0 ID=cds-WP_038272444.1;Parent=gene-LPH39_RS07705;Dbxref=Genbank:WP_038272444.1;Name=WP_038272444.1;Ontology_term=GO:0008654,GO:0004366;gbkey=CDS;gene=plsB;go_function=glycerol-3-phosphate O-acyltransferase activity|0004366||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085224.1;locus_tag=LPH39_RS07705;product=glycerol-3-phosphate 1-O-acyltransferase PlsB;protein_id=WP_038272444.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1907301 1907486 . - . ID=gene-LPH39_RS07710;Name=LPH39_RS07710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07710;old_locus_tag=LPH39_07710 NZ_CP087677.1 GeneMarkS-2+ CDS 1907301 1907486 . - 0 ID=cds-WP_038272442.1;Parent=gene-LPH39_RS07710;Dbxref=Genbank:WP_038272442.1;Name=WP_038272442.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07710;product=hypothetical protein;protein_id=WP_038272442.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1909622 1912648 . + . ID=gene-LPH39_RS07715;Name=LPH39_RS07715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07715;old_locus_tag=LPH39_07715 NZ_CP087677.1 Protein Homology CDS 1909622 1912648 . + 0 ID=cds-WP_038272440.1;Parent=gene-LPH39_RS07715;Dbxref=Genbank:WP_038272440.1;Name=WP_038272440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085223.1;locus_tag=LPH39_RS07715;product=TonB-dependent receptor;protein_id=WP_038272440.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1913080 1914522 . - . ID=gene-LPH39_RS07720;Name=ahcY;gbkey=Gene;gene=ahcY;gene_biotype=protein_coding;locus_tag=LPH39_RS07720;old_locus_tag=LPH39_07720 NZ_CP087677.1 Protein Homology CDS 1913080 1914522 . - 0 ID=cds-WP_038272437.1;Parent=gene-LPH39_RS07720;Dbxref=Genbank:WP_038272437.1;Name=WP_038272437.1;Ontology_term=GO:0006730,GO:0004013;gbkey=CDS;gene=ahcY;go_function=adenosylhomocysteinase activity|0004013||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035988.1;locus_tag=LPH39_RS07720;product=adenosylhomocysteinase;protein_id=WP_038272437.1;transl_table=11 NZ_CP087677.1 cmsearch riboswitch 1914563 1914650 . - . ID=id-NZ_CP087677.1:1914563..1914650;Dbxref=RFAM:RF01057;Note=S-adenosyl-L-homocysteine riboswitch;bound_moiety=S-adenosyl-L-homocysteine;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch NZ_CP087677.1 RefSeq gene 1916037 1916288 . - . ID=gene-LPH39_RS07725;Name=LPH39_RS07725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07725;old_locus_tag=LPH39_07725 NZ_CP087677.1 GeneMarkS-2+ CDS 1916037 1916288 . - 0 ID=cds-WP_114867066.1;Parent=gene-LPH39_RS07725;Dbxref=Genbank:WP_114867066.1;Name=WP_114867066.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07725;product=hypothetical protein;protein_id=WP_114867066.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1916640 1917992 . + . ID=gene-LPH39_RS07730;Name=LPH39_RS07730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07730;old_locus_tag=LPH39_07730 NZ_CP087677.1 Protein Homology CDS 1916640 1917992 . + 0 ID=cds-WP_038272456.1;Parent=gene-LPH39_RS07730;Dbxref=Genbank:WP_038272456.1;Name=WP_038272456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851854.1;locus_tag=LPH39_RS07730;product=AMP-binding protein;protein_id=WP_038272456.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1919107 1919784 . - . ID=gene-LPH39_RS07735;Name=LPH39_RS07735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07735;old_locus_tag=LPH39_07735 NZ_CP087677.1 Protein Homology CDS 1919107 1919784 . - 0 ID=cds-WP_038272433.1;Parent=gene-LPH39_RS07735;Dbxref=Genbank:WP_038272433.1;Name=WP_038272433.1;Ontology_term=GO:0003723,GO:0004523;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851856.1;locus_tag=LPH39_RS07735;product=ribonuclease HII;protein_id=WP_038272433.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1919768 1920997 . - . ID=gene-LPH39_RS07740;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=LPH39_RS07740;old_locus_tag=LPH39_07740 NZ_CP087677.1 Protein Homology CDS 1919768 1920997 . - 0 ID=cds-WP_051482370.1;Parent=gene-LPH39_RS07740;Dbxref=Genbank:WP_051482370.1;Name=WP_051482370.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;gene=lpxB;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893561.1;locus_tag=LPH39_RS07740;product=lipid-A-disaccharide synthase;protein_id=WP_051482370.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1921074 1921865 . - . ID=gene-LPH39_RS07745;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=LPH39_RS07745;old_locus_tag=LPH39_07745 NZ_CP087677.1 Protein Homology CDS 1921074 1921865 . - 0 ID=cds-WP_038272431.1;Parent=gene-LPH39_RS07745;Dbxref=Genbank:WP_038272431.1;Name=WP_038272431.1;Ontology_term=GO:0008610,GO:0008780;gbkey=CDS;gene=lpxA;go_function=acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity|0008780||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507232.1;locus_tag=LPH39_RS07745;product=acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_038272431.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1921887 1922369 . - . ID=gene-LPH39_RS07750;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=LPH39_RS07750;old_locus_tag=LPH39_07750 NZ_CP087677.1 Protein Homology CDS 1921887 1922369 . - 0 ID=cds-WP_038272429.1;Parent=gene-LPH39_RS07750;Dbxref=Genbank:WP_038272429.1;Name=WP_038272429.1;Ontology_term=GO:0006633,GO:0016836;gbkey=CDS;gene=fabZ;go_function=hydro-lyase activity|0016836||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085217.1;locus_tag=LPH39_RS07750;product=3-hydroxyacyl-ACP dehydratase FabZ;protein_id=WP_038272429.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1922366 1923382 . - . ID=gene-LPH39_RS07755;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=LPH39_RS07755;old_locus_tag=LPH39_07755 NZ_CP087677.1 Protein Homology CDS 1922366 1923382 . - 0 ID=cds-WP_038272427.1;Parent=gene-LPH39_RS07755;Dbxref=Genbank:WP_038272427.1;Name=WP_038272427.1;Ontology_term=GO:0009245,GO:0016410;gbkey=CDS;gene=lpxD;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089333.1;locus_tag=LPH39_RS07755;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_038272427.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1923581 1925935 . - . ID=gene-LPH39_RS07760;Name=bamA;gbkey=Gene;gene=bamA;gene_biotype=protein_coding;locus_tag=LPH39_RS07760;old_locus_tag=LPH39_07760 NZ_CP087677.1 Protein Homology CDS 1923581 1925935 . - 0 ID=cds-WP_038272425.1;Parent=gene-LPH39_RS07760;Dbxref=Genbank:WP_038272425.1;Name=WP_038272425.1;Ontology_term=GO:0009279;gbkey=CDS;gene=bamA;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117511.1;locus_tag=LPH39_RS07760;product=outer membrane protein assembly factor BamA;protein_id=WP_038272425.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1926030 1927364 . - . ID=gene-LPH39_RS07765;Name=rseP;gbkey=Gene;gene=rseP;gene_biotype=protein_coding;locus_tag=LPH39_RS07765;old_locus_tag=LPH39_07765 NZ_CP087677.1 Protein Homology CDS 1926030 1927364 . - 0 ID=cds-WP_038272423.1;Parent=gene-LPH39_RS07765;Dbxref=Genbank:WP_038272423.1;Name=WP_038272423.1;Ontology_term=GO:0006508,GO:0004222,GO:0016020;gbkey=CDS;gene=rseP;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089328.1;locus_tag=LPH39_RS07765;product=RIP metalloprotease RseP;protein_id=WP_038272423.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1927395 1928579 . - . ID=gene-LPH39_RS07770;Name=dxr;gbkey=Gene;gene=dxr;gene_biotype=protein_coding;locus_tag=LPH39_RS07770;old_locus_tag=LPH39_07770 NZ_CP087677.1 Protein Homology CDS 1927395 1928579 . - 0 ID=cds-WP_038272421.1;Parent=gene-LPH39_RS07770;Dbxref=Genbank:WP_038272421.1;Name=WP_038272421.1;Ontology_term=GO:0019288,GO:0030604,GO:0005737;gbkey=CDS;gene=dxr;go_component=cytoplasm|0005737||IEA;go_function=1-deoxy-D-xylulose-5-phosphate reductoisomerase activity|0030604||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851863.1;locus_tag=LPH39_RS07770;product=1-deoxy-D-xylulose-5-phosphate reductoisomerase;protein_id=WP_038272421.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1928582 1929436 . - . ID=gene-LPH39_RS07775;Name=LPH39_RS07775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07775;old_locus_tag=LPH39_07775 NZ_CP087677.1 Protein Homology CDS 1928582 1929436 . - 0 ID=cds-WP_038272419.1;Parent=gene-LPH39_RS07775;Dbxref=Genbank:WP_038272419.1;Name=WP_038272419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258695.1;locus_tag=LPH39_RS07775;product=phosphatidate cytidylyltransferase;protein_id=WP_038272419.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1929433 1930179 . - . ID=gene-LPH39_RS07780;Name=uppS;gbkey=Gene;gene=uppS;gene_biotype=protein_coding;locus_tag=LPH39_RS07780;old_locus_tag=LPH39_07780 NZ_CP087677.1 Protein Homology CDS 1929433 1930179 . - 0 ID=cds-WP_171898071.1;Parent=gene-LPH39_RS07780;Dbxref=Genbank:WP_171898071.1;Name=WP_171898071.1;Ontology_term=GO:0009252,GO:0005737;gbkey=CDS;gene=uppS;go_component=cytoplasm|0005737||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346894.1;locus_tag=LPH39_RS07780;product=polyprenyl diphosphate synthase;protein_id=WP_171898071.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1930203 1930760 . - . ID=gene-LPH39_RS07785;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=LPH39_RS07785;old_locus_tag=LPH39_07785 NZ_CP087677.1 Protein Homology CDS 1930203 1930760 . - 0 ID=cds-WP_038272416.1;Parent=gene-LPH39_RS07785;Dbxref=Genbank:WP_038272416.1;Name=WP_038272416.1;Ontology_term=GO:0006412,GO:0008135,GO:0005737;gbkey=CDS;gene=frr;go_component=cytoplasm|0005737||IEA;go_function=translation factor activity%2C RNA binding|0008135||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036562.1;locus_tag=LPH39_RS07785;product=ribosome recycling factor;protein_id=WP_038272416.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1932693 1932842 . + . ID=gene-LPH39_RS07790;Name=LPH39_RS07790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07790;old_locus_tag=LPH39_07790 NZ_CP087677.1 GeneMarkS-2+ CDS 1932693 1932842 . + 0 ID=cds-WP_162814083.1;Parent=gene-LPH39_RS07790;Dbxref=Genbank:WP_162814083.1;Name=WP_162814083.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07790;product=hypothetical protein;protein_id=WP_162814083.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1933932 1935263 . - . ID=gene-LPH39_RS07795;Name=LPH39_RS07795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07795;old_locus_tag=LPH39_07795 NZ_CP087677.1 Protein Homology CDS 1933932 1935263 . - 0 ID=cds-WP_051482394.1;Parent=gene-LPH39_RS07795;Dbxref=Genbank:WP_051482394.1;Name=WP_051482394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851867.1;locus_tag=LPH39_RS07795;product=outer membrane protein transport protein;protein_id=WP_051482394.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1935477 1936169 . + . ID=gene-LPH39_RS07800;Name=LPH39_RS07800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07800;old_locus_tag=LPH39_07800 NZ_CP087677.1 Protein Homology CDS 1935477 1936169 . + 0 ID=cds-WP_038273064.1;Parent=gene-LPH39_RS07800;Dbxref=Genbank:WP_038273064.1;Name=WP_038273064.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301614.1;locus_tag=LPH39_RS07800;product=rhomboid family intramembrane serine protease;protein_id=WP_038273064.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1936266 1936586 . + . ID=gene-LPH39_RS07805;Name=LPH39_RS07805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07805;old_locus_tag=LPH39_07805 NZ_CP087677.1 Protein Homology CDS 1936266 1936586 . + 0 ID=cds-WP_038273062.1;Parent=gene-LPH39_RS07805;Dbxref=Genbank:WP_038273062.1;Name=WP_038273062.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088873.1;locus_tag=LPH39_RS07805;product=DUF1820 family protein;protein_id=WP_038273062.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1937342 1937691 . + . ID=gene-LPH39_RS07810;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=LPH39_RS07810;old_locus_tag=LPH39_07810 NZ_CP087677.1 cmsearch RNase_P_RNA 1937342 1937691 . + . ID=rna-LPH39_RS07810;Parent=gene-LPH39_RS07810;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS07810;product=RNase P RNA component class A NZ_CP087677.1 cmsearch exon 1937342 1937691 . + . ID=exon-LPH39_RS07810-1;Parent=rna-LPH39_RS07810;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS07810;product=RNase P RNA component class A NZ_CP087677.1 RefSeq gene 1938145 1938945 . - . ID=gene-LPH39_RS07815;Name=LPH39_RS07815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07815;old_locus_tag=LPH39_07815 NZ_CP087677.1 Protein Homology CDS 1938145 1938945 . - 0 ID=cds-WP_038273060.1;Parent=gene-LPH39_RS07815;Dbxref=Genbank:WP_038273060.1;Name=WP_038273060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806608.1;locus_tag=LPH39_RS07815;product=ferritin-like domain-containing protein;protein_id=WP_038273060.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1939810 1940541 . - . ID=gene-LPH39_RS07820;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=LPH39_RS07820;old_locus_tag=LPH39_07820 NZ_CP087677.1 Protein Homology CDS 1939810 1940541 . - 0 ID=cds-WP_038271995.1;Parent=gene-LPH39_RS07820;Dbxref=Genbank:WP_038271995.1;Name=WP_038271995.1;Ontology_term=GO:0015949,GO:0033862;gbkey=CDS;gene=pyrH;go_function=UMP kinase activity|0033862||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851871.1;locus_tag=LPH39_RS07820;product=UMP kinase;protein_id=WP_038271995.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1942286 1942465 . - . ID=gene-LPH39_RS07825;Name=LPH39_RS07825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07825;old_locus_tag=LPH39_07825 NZ_CP087677.1 GeneMarkS-2+ CDS 1942286 1942465 . - 0 ID=cds-WP_160165204.1;Parent=gene-LPH39_RS07825;Dbxref=Genbank:WP_160165204.1;Name=WP_160165204.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07825;product=hypothetical protein;protein_id=WP_160165204.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1942685 1942918 . + . ID=gene-LPH39_RS07830;Name=LPH39_RS07830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07830;old_locus_tag=LPH39_07830 NZ_CP087677.1 GeneMarkS-2+ CDS 1942685 1942918 . + 0 ID=cds-WP_038271999.1;Parent=gene-LPH39_RS07830;Dbxref=Genbank:WP_038271999.1;Name=WP_038271999.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07830;product=hypothetical protein;protein_id=WP_038271999.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1943248 1943709 . - . ID=gene-LPH39_RS07835;Name=LPH39_RS07835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07835;old_locus_tag=LPH39_07835 NZ_CP087677.1 Protein Homology CDS 1943248 1943709 . - 0 ID=cds-WP_069636215.1;Parent=gene-LPH39_RS07835;Dbxref=Genbank:WP_069636215.1;Name=WP_069636215.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024949.2;locus_tag=LPH39_RS07835;product=helix-turn-helix transcriptional regulator;protein_id=WP_069636215.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1943770 1943985 . + . ID=gene-LPH39_RS07840;Name=LPH39_RS07840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07840;old_locus_tag=LPH39_07840 NZ_CP087677.1 Protein Homology CDS 1943770 1943985 . + 0 ID=cds-WP_038272001.1;Parent=gene-LPH39_RS07840;Dbxref=Genbank:WP_038272001.1;Name=WP_038272001.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922212.1;locus_tag=LPH39_RS07840;product=hypothetical protein;protein_id=WP_038272001.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1944242 1944577 . + . ID=gene-LPH39_RS07845;Name=LPH39_RS07845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07845;old_locus_tag=LPH39_07845 NZ_CP087677.1 GeneMarkS-2+ CDS 1944242 1944577 . + 0 ID=cds-WP_038272003.1;Parent=gene-LPH39_RS07845;Dbxref=Genbank:WP_038272003.1;Name=WP_038272003.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07845;product=hypothetical protein;protein_id=WP_038272003.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1944669 1945184 . + . ID=gene-LPH39_RS07850;Name=LPH39_RS07850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07850;old_locus_tag=LPH39_07850 NZ_CP087677.1 GeneMarkS-2+ CDS 1944669 1945184 . + 0 ID=cds-WP_038272005.1;Parent=gene-LPH39_RS07850;Dbxref=Genbank:WP_038272005.1;Name=WP_038272005.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07850;product=hypothetical protein;protein_id=WP_038272005.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1945186 1946691 . + . ID=gene-LPH39_RS07855;Name=LPH39_RS07855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07855;old_locus_tag=LPH39_07855 NZ_CP087677.1 GeneMarkS-2+ CDS 1945186 1946691 . + 0 ID=cds-WP_038272007.1;Parent=gene-LPH39_RS07855;Dbxref=Genbank:WP_038272007.1;Name=WP_038272007.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07855;product=hypothetical protein;protein_id=WP_038272007.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1946951 1947385 . + . ID=gene-LPH39_RS07860;Name=LPH39_RS07860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07860;old_locus_tag=LPH39_07860 NZ_CP087677.1 GeneMarkS-2+ CDS 1946951 1947385 . + 0 ID=cds-WP_038272009.1;Parent=gene-LPH39_RS07860;Dbxref=Genbank:WP_038272009.1;Name=WP_038272009.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07860;product=hypothetical protein;protein_id=WP_038272009.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1947378 1947554 . + . ID=gene-LPH39_RS07865;Name=LPH39_RS07865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07865;old_locus_tag=LPH39_07865 NZ_CP087677.1 Protein Homology CDS 1947378 1947554 . + 0 ID=cds-WP_171898044.1;Parent=gene-LPH39_RS07865;Dbxref=Genbank:WP_171898044.1;Name=WP_171898044.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922230.1;locus_tag=LPH39_RS07865;product=hypothetical protein;protein_id=WP_171898044.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1947547 1947807 . + . ID=gene-LPH39_RS07870;Name=LPH39_RS07870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07870;old_locus_tag=LPH39_07870 NZ_CP087677.1 GeneMarkS-2+ CDS 1947547 1947807 . + 0 ID=cds-WP_038272011.1;Parent=gene-LPH39_RS07870;Dbxref=Genbank:WP_038272011.1;Name=WP_038272011.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS07870;product=hypothetical protein;protein_id=WP_038272011.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1947807 1948175 . + . ID=gene-LPH39_RS07875;Name=LPH39_RS07875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07875;old_locus_tag=LPH39_07875 NZ_CP087677.1 Protein Homology CDS 1947807 1948175 . + 0 ID=cds-WP_230428159.1;Parent=gene-LPH39_RS07875;Dbxref=Genbank:WP_230428159.1;Name=WP_230428159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004636902.1;locus_tag=LPH39_RS07875;product=hypothetical protein;protein_id=WP_230428159.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1949095 1949181 . - . ID=gene-LPH39_RS07880;Name=LPH39_RS07880;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS07880;old_locus_tag=LPH39_07880 NZ_CP087677.1 tRNAscan-SE tRNA 1949095 1949181 . - . ID=rna-LPH39_RS07880;Parent=gene-LPH39_RS07880;anticodon=(pos:complement(1949145..1949147));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS07880;product=tRNA-Leu NZ_CP087677.1 tRNAscan-SE exon 1949095 1949181 . - . ID=exon-LPH39_RS07880-1;Parent=rna-LPH39_RS07880;anticodon=(pos:complement(1949145..1949147));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS07880;product=tRNA-Leu NZ_CP087677.1 RefSeq gene 1949306 1949381 . - . ID=gene-LPH39_RS07885;Name=LPH39_RS07885;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS07885;old_locus_tag=LPH39_07885 NZ_CP087677.1 tRNAscan-SE tRNA 1949306 1949381 . - . ID=rna-LPH39_RS07885;Parent=gene-LPH39_RS07885;anticodon=(pos:complement(1949345..1949347));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS07885;product=tRNA-Glu NZ_CP087677.1 tRNAscan-SE exon 1949306 1949381 . - . ID=exon-LPH39_RS07885-1;Parent=rna-LPH39_RS07885;anticodon=(pos:complement(1949345..1949347));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS07885;product=tRNA-Glu NZ_CP087677.1 RefSeq gene 1949435 1949510 . - . ID=gene-LPH39_RS07890;Name=LPH39_RS07890;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS07890;old_locus_tag=LPH39_07890 NZ_CP087677.1 tRNAscan-SE tRNA 1949435 1949510 . - . ID=rna-LPH39_RS07890;Parent=gene-LPH39_RS07890;anticodon=(pos:complement(1949475..1949477));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS07890;product=tRNA-Ala NZ_CP087677.1 tRNAscan-SE exon 1949435 1949510 . - . ID=exon-LPH39_RS07890-1;Parent=rna-LPH39_RS07890;anticodon=(pos:complement(1949475..1949477));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS07890;product=tRNA-Ala NZ_CP087677.1 RefSeq gene 1950549 1951208 . - . ID=gene-LPH39_RS07895;Name=LPH39_RS07895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07895;old_locus_tag=LPH39_07895 NZ_CP087677.1 Protein Homology CDS 1950549 1951208 . - 0 ID=cds-WP_038272015.1;Parent=gene-LPH39_RS07895;Dbxref=Genbank:WP_038272015.1;Name=WP_038272015.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017355957.1;locus_tag=LPH39_RS07895;product=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_038272015.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1951300 1953216 . - . ID=gene-LPH39_RS07900;Name=edd;gbkey=Gene;gene=edd;gene_biotype=protein_coding;locus_tag=LPH39_RS07900;old_locus_tag=LPH39_07900 NZ_CP087677.1 Protein Homology CDS 1951300 1953216 . - 0 ID=cds-WP_038272017.1;Parent=gene-LPH39_RS07900;Dbxref=Genbank:WP_038272017.1;Name=WP_038272017.1;Ontology_term=GO:0009255,GO:0004456;gbkey=CDS;gene=edd;go_function=phosphogluconate dehydratase activity|0004456||IEA;go_process=Entner-Doudoroff pathway through 6-phosphogluconate|0009255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085203.1;locus_tag=LPH39_RS07900;product=phosphogluconate dehydratase;protein_id=WP_038272017.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1953363 1954082 . - . ID=gene-LPH39_RS07905;Name=pgl;gbkey=Gene;gene=pgl;gene_biotype=protein_coding;locus_tag=LPH39_RS07905;old_locus_tag=LPH39_07905 NZ_CP087677.1 Protein Homology CDS 1953363 1954082 . - 0 ID=cds-WP_038272018.1;Parent=gene-LPH39_RS07905;Dbxref=Genbank:WP_038272018.1;Name=WP_038272018.1;Ontology_term=GO:0006098,GO:0017057;gbkey=CDS;gene=pgl;go_function=6-phosphogluconolactonase activity|0017057||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090237.1;locus_tag=LPH39_RS07905;product=6-phosphogluconolactonase;protein_id=WP_038272018.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1954079 1955092 . - . ID=gene-LPH39_RS07910;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=LPH39_RS07910;old_locus_tag=LPH39_07910 NZ_CP087677.1 Protein Homology CDS 1954079 1955092 . - 0 ID=cds-WP_038272019.1;Parent=gene-LPH39_RS07910;Dbxref=Genbank:WP_038272019.1;Name=WP_038272019.1;Ontology_term=GO:0005975,GO:0004340;gbkey=CDS;gene=glk;go_function=glucokinase activity|0004340||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085201.1;locus_tag=LPH39_RS07910;product=glucokinase;protein_id=WP_038272019.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1955089 1956564 . - . ID=gene-LPH39_RS07915;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=protein_coding;locus_tag=LPH39_RS07915;old_locus_tag=LPH39_07915 NZ_CP087677.1 Protein Homology CDS 1955089 1956564 . - 0 ID=cds-WP_230428273.1;Parent=gene-LPH39_RS07915;Dbxref=Genbank:WP_230428273.1;Name=WP_230428273.1;Ontology_term=GO:0006098,GO:0004345;gbkey=CDS;gene=zwf;go_function=glucose-6-phosphate dehydrogenase activity|0004345||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090238.1;locus_tag=LPH39_RS07915;product=glucose-6-phosphate dehydrogenase;protein_id=WP_230428273.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1956886 1957980 . + . ID=gene-LPH39_RS07920;Name=ugpC;gbkey=Gene;gene=ugpC;gene_biotype=protein_coding;locus_tag=LPH39_RS07920;old_locus_tag=LPH39_07920 NZ_CP087677.1 Protein Homology CDS 1956886 1957980 . + 0 ID=cds-WP_038272021.1;Parent=gene-LPH39_RS07920;Dbxref=Genbank:WP_038272021.1;Name=WP_038272021.1;Ontology_term=GO:0005524,GO:0140359;gbkey=CDS;gene=ugpC;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337631.1;locus_tag=LPH39_RS07920;product=sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;protein_id=WP_038272021.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1958131 1958991 . - . ID=gene-LPH39_RS07925;Name=LPH39_RS07925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07925;old_locus_tag=LPH39_07925 NZ_CP087677.1 Protein Homology CDS 1958131 1958991 . - 0 ID=cds-WP_230428160.1;Parent=gene-LPH39_RS07925;Dbxref=Genbank:WP_230428160.1;Name=WP_230428160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017355963.1;locus_tag=LPH39_RS07925;product=folate-binding protein;protein_id=WP_230428160.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1959349 1959450 . + . ID=gene-LPH39_RS07930;Name=LPH39_RS07930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07930;old_locus_tag=LPH39_07930 NZ_CP087677.1 Protein Homology CDS 1959349 1959450 . + 0 ID=cds-WP_230428161.1;Parent=gene-LPH39_RS07930;Dbxref=Genbank:WP_230428161.1;Name=WP_230428161.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019511.2;locus_tag=LPH39_RS07930;product=DUF1674 domain-containing protein;protein_id=WP_230428161.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1959508 1959903 . + . ID=gene-LPH39_RS07935;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;locus_tag=LPH39_RS07935;old_locus_tag=LPH39_07935 NZ_CP087677.1 Protein Homology CDS 1959508 1959903 . + 0 ID=cds-WP_081755467.1;Parent=gene-LPH39_RS07935;Dbxref=Genbank:WP_081755467.1;Name=WP_081755467.1;Ontology_term=GO:0006099,GO:0000104,GO:0045282;gbkey=CDS;gene=sdhC;go_component=plasma membrane succinate dehydrogenase complex|0045282||IEA;go_function=succinate dehydrogenase activity|0000104||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089288.1;locus_tag=LPH39_RS07935;product=succinate dehydrogenase%2C cytochrome b556 subunit;protein_id=WP_081755467.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1959900 1960283 . + . ID=gene-LPH39_RS07940;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;locus_tag=LPH39_RS07940;old_locus_tag=LPH39_07940 NZ_CP087677.1 Protein Homology CDS 1959900 1960283 . + 0 ID=cds-WP_038272022.1;Parent=gene-LPH39_RS07940;Dbxref=Genbank:WP_038272022.1;Name=WP_038272022.1;Ontology_term=GO:0006099,GO:0000104,GO:0045282;gbkey=CDS;gene=sdhD;go_component=plasma membrane succinate dehydrogenase complex|0045282||IEA;go_function=succinate dehydrogenase activity|0000104||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893590.1;locus_tag=LPH39_RS07940;product=succinate dehydrogenase%2C hydrophobic membrane anchor protein;protein_id=WP_038272022.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1960291 1962081 . + . ID=gene-LPH39_RS07945;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=LPH39_RS07945;old_locus_tag=LPH39_07945 NZ_CP087677.1 Protein Homology CDS 1960291 1962081 . + 0 ID=cds-WP_038272023.1;Parent=gene-LPH39_RS07945;Dbxref=Genbank:WP_038272023.1;Name=WP_038272023.1;Ontology_term=GO:0006099,GO:0022900,GO:0016627,GO:0050660;gbkey=CDS;gene=sdhA;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851880.1;locus_tag=LPH39_RS07945;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_038272023.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1962102 1962887 . + . ID=gene-LPH39_RS07950;Name=LPH39_RS07950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07950;old_locus_tag=LPH39_07950 NZ_CP087677.1 Protein Homology CDS 1962102 1962887 . + 0 ID=cds-WP_038272024.1;Parent=gene-LPH39_RS07950;Dbxref=Genbank:WP_038272024.1;Name=WP_038272024.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037280.1;locus_tag=LPH39_RS07950;product=succinate dehydrogenase iron-sulfur subunit;protein_id=WP_038272024.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1963008 1963256 . + . ID=gene-LPH39_RS07955;Name=LPH39_RS07955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07955;old_locus_tag=LPH39_07955 NZ_CP087677.1 Protein Homology CDS 1963008 1963256 . + 0 ID=cds-WP_038272025.1;Parent=gene-LPH39_RS07955;Dbxref=Genbank:WP_038272025.1;Name=WP_038272025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802215.1;locus_tag=LPH39_RS07955;product=succinate dehydrogenase assembly factor 2;protein_id=WP_038272025.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1963207 1963659 . + . ID=gene-LPH39_RS07960;Name=LPH39_RS07960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07960;old_locus_tag=LPH39_07960 NZ_CP087677.1 Protein Homology CDS 1963207 1963659 . + 0 ID=cds-WP_230428497.1;Parent=gene-LPH39_RS07960;Dbxref=Genbank:WP_230428497.1;Name=WP_230428497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085193.1;locus_tag=LPH39_RS07960;product=hypothetical protein;protein_id=WP_230428497.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1963684 1964925 . + . ID=gene-LPH39_RS07965;Name=LPH39_RS07965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07965;old_locus_tag=LPH39_07965 NZ_CP087677.1 Protein Homology CDS 1963684 1964925 . + 0 ID=cds-WP_038272028.1;Parent=gene-LPH39_RS07965;Dbxref=Genbank:WP_038272028.1;Name=WP_038272028.1;Ontology_term=GO:0042953,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902586.1;locus_tag=LPH39_RS07965;product=lipoprotein-releasing ABC transporter permease subunit;protein_id=WP_038272028.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1964918 1965640 . + . ID=gene-LPH39_RS07970;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=LPH39_RS07970;old_locus_tag=LPH39_07970 NZ_CP087677.1 Protein Homology CDS 1964918 1965640 . + 0 ID=cds-WP_038272030.1;Parent=gene-LPH39_RS07970;Dbxref=Genbank:WP_038272030.1;Name=WP_038272030.1;Ontology_term=GO:0042953,GO:0005524,GO:0043190;gbkey=CDS;gene=lolD;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089270.1;locus_tag=LPH39_RS07970;product=lipoprotein-releasing ABC transporter ATP-binding protein LolD;protein_id=WP_038272030.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1966222 1968621 . + . ID=gene-LPH39_RS07975;Name=LPH39_RS07975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07975;old_locus_tag=LPH39_07975 NZ_CP087677.1 Protein Homology CDS 1966222 1968621 . + 0 ID=cds-WP_230428274.1;Parent=gene-LPH39_RS07975;Dbxref=Genbank:WP_230428274.1;Name=WP_230428274.1;Ontology_term=GO:0009290,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=DNA import into cell involved in transformation|0009290||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851884.1;locus_tag=LPH39_RS07975;product=DNA internalization-related competence protein ComEC/Rec2;protein_id=WP_230428274.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1968606 1969271 . + . ID=gene-LPH39_RS07980;Name=LPH39_RS07980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07980;old_locus_tag=LPH39_07980 NZ_CP087677.1 Protein Homology CDS 1968606 1969271 . + 0 ID=cds-WP_038272035.1;Parent=gene-LPH39_RS07980;Dbxref=Genbank:WP_038272035.1;Name=WP_038272035.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085189.1;locus_tag=LPH39_RS07980;product=MotA/TolQ/ExbB proton channel family protein;protein_id=WP_038272035.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1969276 1969713 . + . ID=gene-LPH39_RS07985;Name=LPH39_RS07985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS07985;old_locus_tag=LPH39_07985 NZ_CP087677.1 Protein Homology CDS 1969276 1969713 . + 0 ID=cds-WP_038272037.1;Parent=gene-LPH39_RS07985;Dbxref=Genbank:WP_038272037.1;Name=WP_038272037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237622.1;locus_tag=LPH39_RS07985;product=biopolymer transporter ExbD;protein_id=WP_038272037.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1969731 1971479 . + . ID=gene-LPH39_RS07990;Name=msbA;gbkey=Gene;gene=msbA;gene_biotype=protein_coding;locus_tag=LPH39_RS07990;old_locus_tag=LPH39_07990 NZ_CP087677.1 Protein Homology CDS 1969731 1971479 . + 0 ID=cds-WP_038272039.1;Parent=gene-LPH39_RS07990;Dbxref=Genbank:WP_038272039.1;Name=WP_038272039.1;Ontology_term=GO:0006869,GO:0005319;gbkey=CDS;gene=msbA;go_function=lipid transporter activity|0005319||IEA;go_process=lipid transport|0006869||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851886.1;locus_tag=LPH39_RS07990;product=lipid A export permease/ATP-binding protein MsbA;protein_id=WP_038272039.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1971476 1972495 . + . ID=gene-LPH39_RS07995;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=LPH39_RS07995;old_locus_tag=LPH39_07995 NZ_CP087677.1 Protein Homology CDS 1971476 1972495 . + 0 ID=cds-WP_038272041.1;Parent=gene-LPH39_RS07995;Dbxref=Genbank:WP_038272041.1;Name=WP_038272041.1;Ontology_term=GO:0009245,GO:0009029;gbkey=CDS;gene=lpxK;go_function=tetraacyldisaccharide 4'-kinase activity|0009029||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085186.1;locus_tag=LPH39_RS07995;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_038272041.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1973819 1974451 . + . ID=gene-LPH39_RS08000;Name=LPH39_RS08000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08000;old_locus_tag=LPH39_08000 NZ_CP087677.1 Protein Homology CDS 1973819 1974451 . + 0 ID=cds-WP_038272043.1;Parent=gene-LPH39_RS08000;Dbxref=Genbank:WP_038272043.1;Name=WP_038272043.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850972.1;locus_tag=LPH39_RS08000;product=ParA family protein;protein_id=WP_038272043.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1974471 1974947 . + . ID=gene-LPH39_RS08005;Name=LPH39_RS08005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08005;old_locus_tag=LPH39_08005 NZ_CP087677.1 Protein Homology CDS 1974471 1974947 . + 0 ID=cds-WP_038272079.1;Parent=gene-LPH39_RS08005;Dbxref=Genbank:WP_038272079.1;Name=WP_038272079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035432.1;locus_tag=LPH39_RS08005;product=histidine phosphatase family protein;protein_id=WP_038272079.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1974952 1975524 . + . ID=gene-LPH39_RS08010;Name=LPH39_RS08010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08010;old_locus_tag=LPH39_08010 NZ_CP087677.1 Protein Homology CDS 1974952 1975524 . + 0 ID=cds-WP_051482358.1;Parent=gene-LPH39_RS08010;Dbxref=Genbank:WP_051482358.1;Name=WP_051482358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017355481.1;locus_tag=LPH39_RS08010;product=YceI family protein;protein_id=WP_051482358.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1975521 1977473 . + . ID=gene-LPH39_RS08015;Name=LPH39_RS08015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08015;old_locus_tag=LPH39_08015 NZ_CP087677.1 Protein Homology CDS 1975521 1977473 . + 0 ID=cds-WP_038272045.1;Parent=gene-LPH39_RS08015;Dbxref=Genbank:WP_038272045.1;Name=WP_038272045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097628.1;locus_tag=LPH39_RS08015;product=phospholipase D family protein;protein_id=WP_038272045.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1978030 1978455 . + . ID=gene-LPH39_RS08020;Name=LPH39_RS08020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08020;old_locus_tag=LPH39_08020 NZ_CP087677.1 Protein Homology CDS 1978030 1978455 . + 0 ID=cds-WP_200866205.1;Parent=gene-LPH39_RS08020;Dbxref=Genbank:WP_200866205.1;Name=WP_200866205.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016246.2;locus_tag=LPH39_RS08020;product=DUF488 domain-containing protein;protein_id=WP_200866205.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1978412 1978849 . - . ID=gene-LPH39_RS08025;Name=LPH39_RS08025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08025;old_locus_tag=LPH39_08025 NZ_CP087677.1 GeneMarkS-2+ CDS 1978412 1978849 . - 0 ID=cds-WP_201745823.1;Parent=gene-LPH39_RS08025;Dbxref=Genbank:WP_201745823.1;Name=WP_201745823.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08025;product=hypothetical protein;protein_id=WP_201745823.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1978943 1979098 . - . ID=gene-LPH39_RS08030;Name=LPH39_RS08030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08030;old_locus_tag=LPH39_08030 NZ_CP087677.1 GeneMarkS-2+ CDS 1978943 1979098 . - 0 ID=cds-WP_200866207.1;Parent=gene-LPH39_RS08030;Dbxref=Genbank:WP_200866207.1;Name=WP_200866207.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08030;product=hypothetical protein;protein_id=WP_200866207.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1979361 1979846 . - . ID=gene-LPH39_RS08035;Name=LPH39_RS08035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08035;old_locus_tag=LPH39_08035 NZ_CP087677.1 Protein Homology CDS 1979361 1979846 . - 0 ID=cds-WP_038272048.1;Parent=gene-LPH39_RS08035;Dbxref=Genbank:WP_038272048.1;Name=WP_038272048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488754.1;locus_tag=LPH39_RS08035;product=asparaginase domain-containing protein;protein_id=WP_038272048.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1979920 1980519 . - . ID=gene-LPH39_RS08040;Name=wrbA;gbkey=Gene;gene=wrbA;gene_biotype=protein_coding;locus_tag=LPH39_RS08040;old_locus_tag=LPH39_08040 NZ_CP087677.1 Protein Homology CDS 1979920 1980519 . - 0 ID=cds-WP_038272050.1;Parent=gene-LPH39_RS08040;Dbxref=Genbank:WP_038272050.1;Name=WP_038272050.1;Ontology_term=GO:0003955,GO:0010181;gbkey=CDS;gene=wrbA;go_function=NAD(P)H dehydrogenase (quinone) activity|0003955||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893611.1;locus_tag=LPH39_RS08040;product=NAD(P)H:quinone oxidoreductase;protein_id=WP_038272050.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1981357 1982535 . + . ID=gene-LPH39_RS08045;Name=pncB;gbkey=Gene;gene=pncB;gene_biotype=protein_coding;locus_tag=LPH39_RS08045;old_locus_tag=LPH39_08045 NZ_CP087677.1 Protein Homology CDS 1981357 1982535 . + 0 ID=cds-WP_038272082.1;Parent=gene-LPH39_RS08045;Dbxref=Genbank:WP_038272082.1;Name=WP_038272082.1;Ontology_term=GO:0019358,GO:0004516;gbkey=CDS;gene=pncB;go_function=nicotinate phosphoribosyltransferase activity|0004516||IEA;go_process=nicotinate nucleotide salvage|0019358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003472474.1;locus_tag=LPH39_RS08045;product=nicotinate phosphoribosyltransferase;protein_id=WP_038272082.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1983803 1984381 . - . ID=gene-LPH39_RS08050;Name=LPH39_RS08050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08050;old_locus_tag=LPH39_08050 NZ_CP087677.1 Protein Homology CDS 1983803 1984381 . - 0 ID=cds-WP_038272053.1;Parent=gene-LPH39_RS08050;Dbxref=Genbank:WP_038272053.1;Name=WP_038272053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893616.1;locus_tag=LPH39_RS08050;product=phosphoesterase;protein_id=WP_038272053.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1984949 1985089 . - . ID=gene-LPH39_RS08055;Name=LPH39_RS08055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08055;old_locus_tag=LPH39_08055 NZ_CP087677.1 Protein Homology CDS 1984949 1985089 . - 0 ID=cds-WP_230428163.1;Parent=gene-LPH39_RS08055;Dbxref=Genbank:WP_230428163.1;Name=WP_230428163.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024671.2;locus_tag=LPH39_RS08055;product=DUF4065 domain-containing protein;protein_id=WP_230428163.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1986374 1986937 . - . ID=gene-LPH39_RS08060;Name=LPH39_RS08060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08060;old_locus_tag=LPH39_08060 NZ_CP087677.1 Protein Homology CDS 1986374 1986937 . - 0 ID=cds-WP_038272055.1;Parent=gene-LPH39_RS08060;Dbxref=Genbank:WP_038272055.1;Name=WP_038272055.1;Ontology_term=GO:0003725;gbkey=CDS;go_function=double-stranded RNA binding|0003725||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921907.1;locus_tag=LPH39_RS08060;product=Sua5/YciO/YrdC/YwlC family protein;protein_id=WP_038272055.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1987072 1989507 . - . ID=gene-LPH39_RS08065;Name=LPH39_RS08065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08065;old_locus_tag=LPH39_08065 NZ_CP087677.1 Protein Homology CDS 1987072 1989507 . - 0 ID=cds-WP_038272057.1;Parent=gene-LPH39_RS08065;Dbxref=Genbank:WP_038272057.1;Name=WP_038272057.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089635.1;locus_tag=LPH39_RS08065;product=DNA topoisomerase I;protein_id=WP_038272057.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1989787 1990095 . - . ID=gene-LPH39_RS08070;Name=LPH39_RS08070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08070;old_locus_tag=LPH39_08070 NZ_CP087677.1 GeneMarkS-2+ CDS 1989787 1990095 . - 0 ID=cds-WP_038272058.1;Parent=gene-LPH39_RS08070;Dbxref=Genbank:WP_038272058.1;Name=WP_038272058.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08070;product=RDD family protein;protein_id=WP_038272058.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1990916 1991389 . - . ID=gene-LPH39_RS08075;Name=LPH39_RS08075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08075;old_locus_tag=LPH39_08075 NZ_CP087677.1 Protein Homology CDS 1990916 1991389 . - 0 ID=cds-WP_038272059.1;Parent=gene-LPH39_RS08075;Dbxref=Genbank:WP_038272059.1;Name=WP_038272059.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159357.1;locus_tag=LPH39_RS08075;product=DUF494 family protein;protein_id=WP_038272059.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1991435 1992574 . - . ID=gene-LPH39_RS08080;Name=dprA;gbkey=Gene;gene=dprA;gene_biotype=protein_coding;locus_tag=LPH39_RS08080;old_locus_tag=LPH39_08080 NZ_CP087677.1 Protein Homology CDS 1991435 1992574 . - 0 ID=cds-WP_038272084.1;Parent=gene-LPH39_RS08080;Dbxref=Genbank:WP_038272084.1;Name=WP_038272084.1;Ontology_term=GO:0009294;gbkey=CDS;gene=dprA;go_process=DNA-mediated transformation|0009294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851583.1;locus_tag=LPH39_RS08080;product=DNA-processing protein DprA;protein_id=WP_038272084.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1992669 1993829 . - . ID=gene-LPH39_RS08085;Name=LPH39_RS08085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08085;old_locus_tag=LPH39_08085 NZ_CP087677.1 Protein Homology CDS 1992669 1993829 . - 0 ID=cds-WP_038272062.1;Parent=gene-LPH39_RS08085;Dbxref=Genbank:WP_038272062.1;Name=WP_038272062.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851584.1;locus_tag=LPH39_RS08085;product=LysM peptidoglycan-binding domain-containing protein;protein_id=WP_038272062.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1993968 1994480 . + . ID=gene-LPH39_RS08090;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=LPH39_RS08090;old_locus_tag=LPH39_08090 NZ_CP087677.1 Protein Homology CDS 1993968 1994480 . + 0 ID=cds-WP_038272064.1;Parent=gene-LPH39_RS08090;Dbxref=Genbank:WP_038272064.1;Name=WP_038272064.1;Ontology_term=GO:0036211,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911379.1;locus_tag=LPH39_RS08090;product=peptide deformylase;protein_id=WP_038272064.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1994586 1995509 . + . ID=gene-LPH39_RS08095;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=LPH39_RS08095;old_locus_tag=LPH39_08095 NZ_CP087677.1 Protein Homology CDS 1994586 1995509 . + 0 ID=cds-WP_038272066.1;Parent=gene-LPH39_RS08095;Dbxref=Genbank:WP_038272066.1;Name=WP_038272066.1;Ontology_term=GO:0006431,GO:0004479,GO:0005737;gbkey=CDS;gene=fmt;go_component=cytoplasm|0005737||IEA;go_function=methionyl-tRNA formyltransferase activity|0004479||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851586.1;locus_tag=LPH39_RS08095;product=methionyl-tRNA formyltransferase;protein_id=WP_038272066.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1995506 1996795 . + . ID=gene-LPH39_RS08100;Name=rsmB;gbkey=Gene;gene=rsmB;gene_biotype=protein_coding;locus_tag=LPH39_RS08100;old_locus_tag=LPH39_08100 NZ_CP087677.1 Protein Homology CDS 1995506 1996795 . + 0 ID=cds-WP_038272068.1;Parent=gene-LPH39_RS08100;Dbxref=Genbank:WP_038272068.1;Name=WP_038272068.1;Ontology_term=GO:0001510,GO:0006355,GO:0006364,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmB;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA,regulation of DNA-templated transcription|0006355||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849283.1;locus_tag=LPH39_RS08100;product=16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;protein_id=WP_038272068.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1996828 1998543 . + . ID=gene-LPH39_RS08105;Name=LPH39_RS08105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08105;old_locus_tag=LPH39_08105 NZ_CP087677.1 Protein Homology CDS 1996828 1998543 . + 0 ID=cds-WP_038272070.1;Parent=gene-LPH39_RS08105;Dbxref=Genbank:WP_038272070.1;Name=WP_038272070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091215.1;locus_tag=LPH39_RS08105;product=glycosyltransferase family 39 protein;protein_id=WP_038272070.1;transl_table=11 NZ_CP087677.1 RefSeq gene 1999105 2000166 . - . ID=gene-LPH39_RS08110;Name=LPH39_RS08110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08110;old_locus_tag=LPH39_08110 NZ_CP087677.1 Protein Homology CDS 1999105 2000166 . - 0 ID=cds-WP_038273275.1;Parent=gene-LPH39_RS08110;Dbxref=Genbank:WP_038273275.1;Name=WP_038273275.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852652.1;locus_tag=LPH39_RS08110;product=tyrosine-type recombinase/integrase;protein_id=WP_038273275.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2000179 2000415 . - . ID=gene-LPH39_RS08115;Name=LPH39_RS08115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08115;old_locus_tag=LPH39_08115 NZ_CP087677.1 Protein Homology CDS 2000179 2000415 . - 0 ID=cds-WP_069636229.1;Parent=gene-LPH39_RS08115;Dbxref=Genbank:WP_069636229.1;Name=WP_069636229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852651.1;locus_tag=LPH39_RS08115;product=DUF4224 domain-containing protein;protein_id=WP_069636229.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2000466 2001002 . - . ID=gene-LPH39_RS08120;Name=LPH39_RS08120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08120;old_locus_tag=LPH39_08120 NZ_CP087677.1 Protein Homology CDS 2000466 2001002 . - 0 ID=cds-WP_038273354.1;Parent=gene-LPH39_RS08120;Dbxref=Genbank:WP_038273354.1;Name=WP_038273354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337723.1;locus_tag=LPH39_RS08120;product=pilin;protein_id=WP_038273354.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2000999 2002384 . - . ID=gene-LPH39_RS08125;Name=LPH39_RS08125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08125;old_locus_tag=LPH39_08125 NZ_CP087677.1 Protein Homology CDS 2000999 2002384 . - 0 ID=cds-WP_114867068.1;Parent=gene-LPH39_RS08125;Dbxref=Genbank:WP_114867068.1;Name=WP_114867068.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085030.1;locus_tag=LPH39_RS08125;product=DEAD/DEAH box helicase;protein_id=WP_114867068.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2002460 2002765 . + . ID=gene-LPH39_RS08130;Name=LPH39_RS08130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08130;old_locus_tag=LPH39_08130 NZ_CP087677.1 Protein Homology CDS 2002460 2002765 . + 0 ID=cds-WP_114867069.1;Parent=gene-LPH39_RS08130;Dbxref=Genbank:WP_114867069.1;Name=WP_114867069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851619.1;locus_tag=LPH39_RS08130;product=DUF1640 domain-containing protein;protein_id=WP_114867069.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2002767 2003039 . - . ID=gene-LPH39_RS08135;Name=LPH39_RS08135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08135;old_locus_tag=LPH39_08135 NZ_CP087677.1 Protein Homology CDS 2002767 2003039 . - 0 ID=cds-WP_114867070.1;Parent=gene-LPH39_RS08135;Dbxref=Genbank:WP_114867070.1;Name=WP_114867070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382732.1;locus_tag=LPH39_RS08135;product=VRR-NUC domain-containing protein;protein_id=WP_114867070.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2003043 2003342 . - . ID=gene-LPH39_RS08140;Name=LPH39_RS08140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08140;old_locus_tag=LPH39_08140 NZ_CP087677.1 GeneMarkS-2+ CDS 2003043 2003342 . - 0 ID=cds-WP_051482410.1;Parent=gene-LPH39_RS08140;Dbxref=Genbank:WP_051482410.1;Name=WP_051482410.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08140;product=hypothetical protein;protein_id=WP_051482410.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2003366 2003719 . - . ID=gene-LPH39_RS08145;Name=LPH39_RS08145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08145;old_locus_tag=LPH39_08145 NZ_CP087677.1 Protein Homology CDS 2003366 2003719 . - 0 ID=cds-WP_081755417.1;Parent=gene-LPH39_RS08145;Dbxref=Genbank:WP_081755417.1;Name=WP_081755417.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022444.2;locus_tag=LPH39_RS08145;product=DUF2815 family protein;protein_id=WP_081755417.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2003716 2004993 . - . ID=gene-LPH39_RS08150;Name=LPH39_RS08150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08150;old_locus_tag=LPH39_08150 NZ_CP087677.1 Protein Homology CDS 2003716 2004993 . - 0 ID=cds-WP_038270871.1;Parent=gene-LPH39_RS08150;Dbxref=Genbank:WP_038270871.1;Name=WP_038270871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894945.1;locus_tag=LPH39_RS08150;product=DUF2800 domain-containing protein;protein_id=WP_038270871.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2004990 2005220 . - . ID=gene-LPH39_RS08155;Name=LPH39_RS08155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08155;old_locus_tag=LPH39_08155 NZ_CP087677.1 GeneMarkS-2+ CDS 2004990 2005220 . - 0 ID=cds-WP_038270872.1;Parent=gene-LPH39_RS08155;Dbxref=Genbank:WP_038270872.1;Name=WP_038270872.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08155;product=hypothetical protein;protein_id=WP_038270872.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2005226 2005878 . + . ID=gene-LPH39_RS08160;Name=LPH39_RS08160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS08160;old_locus_tag=LPH39_08160;partial=true;pseudo=true;start_range=.,2005226 NZ_CP087677.1 Protein Homology CDS 2005226 2005878 . + 0 ID=cds-LPH39_RS08160;Parent=gene-LPH39_RS08160;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003156775.1;locus_tag=LPH39_RS08160;partial=true;product=sodium-independent anion transporter;pseudo=true;start_range=.,2005226;transl_table=11 NZ_CP087677.1 RefSeq gene 2006043 2006582 . + . ID=gene-LPH39_RS08165;Name=LPH39_RS08165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08165;old_locus_tag=LPH39_08165 NZ_CP087677.1 GeneMarkS-2+ CDS 2006043 2006582 . + 0 ID=cds-WP_152536598.1;Parent=gene-LPH39_RS08165;Dbxref=Genbank:WP_152536598.1;Name=WP_152536598.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08165;product=hypothetical protein;protein_id=WP_152536598.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2006881 2007999 . + . ID=gene-LPH39_RS08170;Name=cfa;gbkey=Gene;gene=cfa;gene_biotype=protein_coding;locus_tag=LPH39_RS08170;old_locus_tag=LPH39_08170 NZ_CP087677.1 Protein Homology CDS 2006881 2007999 . + 0 ID=cds-WP_114867072.1;Parent=gene-LPH39_RS08170;Dbxref=Genbank:WP_114867072.1;Name=WP_114867072.1;gbkey=CDS;gene=cfa;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005413430.1;locus_tag=LPH39_RS08170;product=cyclopropane fatty acyl phospholipid synthase;protein_id=WP_114867072.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2008323 2008446 . + . ID=gene-LPH39_RS08175;Name=LPH39_RS08175;end_range=2008446,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS08175;old_locus_tag=LPH39_08175;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 2008323 2008446 . + 0 ID=cds-LPH39_RS08175;Parent=gene-LPH39_RS08175;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003700;end_range=2008446,.;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003227859.1;locus_tag=LPH39_RS08175;partial=true;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2008630 2009172 . + . ID=gene-LPH39_RS08180;Name=LPH39_RS08180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08180;old_locus_tag=LPH39_08180 NZ_CP087677.1 GeneMarkS-2+ CDS 2008630 2009172 . + 0 ID=cds-WP_038270877.1;Parent=gene-LPH39_RS08180;Dbxref=Genbank:WP_038270877.1;Name=WP_038270877.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08180;product=hypothetical protein;protein_id=WP_038270877.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2009212 2009427 . - . ID=gene-LPH39_RS08185;Name=LPH39_RS08185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08185;old_locus_tag=LPH39_08185 NZ_CP087677.1 GeneMarkS-2+ CDS 2009212 2009427 . - 0 ID=cds-WP_230428164.1;Parent=gene-LPH39_RS08185;Dbxref=Genbank:WP_230428164.1;Name=WP_230428164.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08185;product=hypothetical protein;protein_id=WP_230428164.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2009891 2010277 . + . ID=gene-LPH39_RS08190;Name=LPH39_RS08190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08190;old_locus_tag=LPH39_08190 NZ_CP087677.1 GeneMarkS-2+ CDS 2009891 2010277 . + 0 ID=cds-WP_160199351.1;Parent=gene-LPH39_RS08190;Dbxref=Genbank:WP_160199351.1;Name=WP_160199351.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08190;product=hypothetical protein;protein_id=WP_160199351.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2010429 2010602 . - . ID=gene-LPH39_RS08195;Name=LPH39_RS08195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08195;old_locus_tag=LPH39_08195 NZ_CP087677.1 GeneMarkS-2+ CDS 2010429 2010602 . - 0 ID=cds-WP_160165157.1;Parent=gene-LPH39_RS08195;Dbxref=Genbank:WP_160165157.1;Name=WP_160165157.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08195;product=hypothetical protein;protein_id=WP_160165157.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2010862 2011137 . - . ID=gene-LPH39_RS08200;Name=LPH39_RS08200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08200;old_locus_tag=LPH39_08200 NZ_CP087677.1 Protein Homology CDS 2010862 2011137 . - 0 ID=cds-WP_051482289.1;Parent=gene-LPH39_RS08200;Dbxref=Genbank:WP_051482289.1;Name=WP_051482289.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027273.2;locus_tag=LPH39_RS08200;product=YdaS family helix-turn-helix protein;protein_id=WP_051482289.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2011235 2011558 . + . ID=gene-LPH39_RS08205;Name=LPH39_RS08205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08205;old_locus_tag=LPH39_08205 NZ_CP087677.1 GeneMarkS-2+ CDS 2011235 2011558 . + 0 ID=cds-WP_069636207.1;Parent=gene-LPH39_RS08205;Dbxref=Genbank:WP_069636207.1;Name=WP_069636207.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08205;product=hypothetical protein;protein_id=WP_069636207.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2012281 2012631 . + . ID=gene-LPH39_RS08210;Name=LPH39_RS08210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08210;old_locus_tag=LPH39_08210 NZ_CP087677.1 GeneMarkS-2+ CDS 2012281 2012631 . + 0 ID=cds-WP_152536599.1;Parent=gene-LPH39_RS08210;Dbxref=Genbank:WP_152536599.1;Name=WP_152536599.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08210;product=hypothetical protein;protein_id=WP_152536599.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2012815 2013012 . + . ID=gene-LPH39_RS08215;Name=LPH39_RS08215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08215;old_locus_tag=LPH39_08215 NZ_CP087677.1 GeneMarkS-2+ CDS 2012815 2013012 . + 0 ID=cds-WP_038270880.1;Parent=gene-LPH39_RS08215;Dbxref=Genbank:WP_038270880.1;Name=WP_038270880.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08215;product=hypothetical protein;protein_id=WP_038270880.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2013149 2013319 . + . ID=gene-LPH39_RS08220;Name=LPH39_RS08220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08220;old_locus_tag=LPH39_08220 NZ_CP087677.1 GeneMarkS-2+ CDS 2013149 2013319 . + 0 ID=cds-WP_160165158.1;Parent=gene-LPH39_RS08220;Dbxref=Genbank:WP_160165158.1;Name=WP_160165158.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08220;product=hypothetical protein;protein_id=WP_160165158.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2013522 2013740 . + . ID=gene-LPH39_RS08225;Name=LPH39_RS08225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08225;old_locus_tag=LPH39_08225 NZ_CP087677.1 Protein Homology CDS 2013522 2013740 . + 0 ID=cds-WP_038270881.1;Parent=gene-LPH39_RS08225;Dbxref=Genbank:WP_038270881.1;Name=WP_038270881.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017717.2;locus_tag=LPH39_RS08225;product=AlpA family phage regulatory protein;protein_id=WP_038270881.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2016168 2016806 . + . ID=gene-LPH39_RS08230;Name=LPH39_RS08230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08230;old_locus_tag=LPH39_08230 NZ_CP087677.1 Protein Homology CDS 2016168 2016806 . + 0 ID=cds-WP_038271002.1;Parent=gene-LPH39_RS08230;Dbxref=Genbank:WP_038271002.1;Name=WP_038271002.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490472.1;locus_tag=LPH39_RS08230;product=DUF4375 domain-containing protein;protein_id=WP_038271002.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2017715 2018008 . - . ID=gene-LPH39_RS08235;Name=LPH39_RS08235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08235;old_locus_tag=LPH39_08235 NZ_CP087677.1 Protein Homology CDS 2017715 2018008 . - 0 ID=cds-WP_038270884.1;Parent=gene-LPH39_RS08235;Dbxref=Genbank:WP_038270884.1;Name=WP_038270884.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893619.1;locus_tag=LPH39_RS08235;product=DUF2782 domain-containing protein;protein_id=WP_038270884.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2018093 2020858 . + . ID=gene-LPH39_RS08240;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=LPH39_RS08240;old_locus_tag=LPH39_08240 NZ_CP087677.1 Protein Homology CDS 2018093 2020858 . + 0 ID=cds-WP_038271003.1;Parent=gene-LPH39_RS08240;Dbxref=Genbank:WP_038271003.1;Name=WP_038271003.1;Ontology_term=GO:0006261,GO:0003676,GO:0003677,GO:0003887,GO:0008408;gbkey=CDS;gene=polA;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA-templated DNA replication|0006261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159421.1;locus_tag=LPH39_RS08240;product=DNA polymerase I;protein_id=WP_038271003.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2022058 2022726 . + . ID=gene-LPH39_RS08245;Name=LPH39_RS08245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08245;old_locus_tag=LPH39_08245 NZ_CP087677.1 Protein Homology CDS 2022058 2022726 . + 0 ID=cds-WP_051482290.1;Parent=gene-LPH39_RS08245;Dbxref=Genbank:WP_051482290.1;Name=WP_051482290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114807.1;locus_tag=LPH39_RS08245;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_051482290.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2022924 2024048 . + . ID=gene-LPH39_RS08250;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;locus_tag=LPH39_RS08250;old_locus_tag=LPH39_08250 NZ_CP087677.1 Protein Homology CDS 2022924 2024048 . + 0 ID=cds-WP_038271004.1;Parent=gene-LPH39_RS08250;Dbxref=Genbank:WP_038271004.1;Name=WP_038271004.1;Ontology_term=GO:0009220,GO:0004088,GO:0005951;gbkey=CDS;gene=carA;go_component=carbamoyl-phosphate synthase complex|0005951||IEA;go_function=carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|0004088||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893623.1;locus_tag=LPH39_RS08250;product=glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit;protein_id=WP_038271004.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2024482 2027724 . + . ID=gene-LPH39_RS08255;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=LPH39_RS08255;old_locus_tag=LPH39_08255 NZ_CP087677.1 Protein Homology CDS 2024482 2027724 . + 0 ID=cds-WP_038270888.1;Parent=gene-LPH39_RS08255;Dbxref=Genbank:WP_038270888.1;Name=WP_038270888.1;Ontology_term=GO:0006807,GO:0005524,GO:0046872;gbkey=CDS;gene=carB;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085673.1;locus_tag=LPH39_RS08255;product=carbamoyl-phosphate synthase large subunit;protein_id=WP_038270888.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2027721 2028197 . + . ID=gene-LPH39_RS08260;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=LPH39_RS08260;old_locus_tag=LPH39_08260 NZ_CP087677.1 Protein Homology CDS 2027721 2028197 . + 0 ID=cds-WP_081755418.1;Parent=gene-LPH39_RS08260;Dbxref=Genbank:WP_081755418.1;Name=WP_081755418.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=greA;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085672.1;locus_tag=LPH39_RS08260;product=transcription elongation factor GreA;protein_id=WP_081755418.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2028205 2029125 . + . ID=gene-LPH39_RS08265;Name=LPH39_RS08265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08265;old_locus_tag=LPH39_08265 NZ_CP087677.1 Protein Homology CDS 2028205 2029125 . + 0 ID=cds-WP_038270892.1;Parent=gene-LPH39_RS08265;Dbxref=Genbank:WP_038270892.1;Name=WP_038270892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806444.1;locus_tag=LPH39_RS08265;product=phosphoglycerate mutase;protein_id=WP_038270892.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2029128 2030894 . + . ID=gene-LPH39_RS08270;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=LPH39_RS08270;old_locus_tag=LPH39_08270 NZ_CP087677.1 Protein Homology CDS 2029128 2030894 . + 0 ID=cds-WP_114867209.1;Parent=gene-LPH39_RS08270;Dbxref=Genbank:WP_114867209.1;Name=WP_114867209.1;Ontology_term=GO:0006310,GO:0008297;gbkey=CDS;gene=recJ;go_function=single-stranded DNA exodeoxyribonuclease activity|0008297||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337671.1;locus_tag=LPH39_RS08270;product=single-stranded-DNA-specific exonuclease RecJ;protein_id=WP_114867209.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2031506 2032631 . + . ID=gene-LPH39_RS08275;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=LPH39_RS08275;old_locus_tag=LPH39_08275 NZ_CP087677.1 Protein Homology CDS 2031506 2031580 . + 0 ID=cds-WP_114867074.1;Parent=gene-LPH39_RS08275;Dbxref=Genbank:WP_114867074.1;Name=WP_114867074.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0003747;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014037064.1;locus_tag=LPH39_RS08275;product=peptide chain release factor 2;protein_id=WP_114867074.1;transl_table=11 NZ_CP087677.1 Protein Homology CDS 2031582 2032631 . + 0 ID=cds-WP_114867074.1;Parent=gene-LPH39_RS08275;Dbxref=Genbank:WP_114867074.1;Name=WP_114867074.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0003747;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014037064.1;locus_tag=LPH39_RS08275;product=peptide chain release factor 2;protein_id=WP_114867074.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2032817 2034337 . + . ID=gene-LPH39_RS08280;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=LPH39_RS08280;old_locus_tag=LPH39_08280 NZ_CP087677.1 Protein Homology CDS 2032817 2034337 . + 0 ID=cds-WP_038270894.1;Parent=gene-LPH39_RS08280;Dbxref=Genbank:WP_038270894.1;Name=WP_038270894.1;Ontology_term=GO:0006430,GO:0004824,GO:0005737;gbkey=CDS;gene=lysS;go_component=cytoplasm|0005737||IEA;go_function=lysine-tRNA ligase activity|0004824||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085668.1;locus_tag=LPH39_RS08280;product=lysine--tRNA ligase;protein_id=WP_038270894.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2034481 2035623 . + . ID=gene-LPH39_RS08285;Name=LPH39_RS08285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08285;old_locus_tag=LPH39_08285 NZ_CP087677.1 Protein Homology CDS 2034481 2035623 . + 0 ID=cds-WP_051482298.1;Parent=gene-LPH39_RS08285;Dbxref=Genbank:WP_051482298.1;Name=WP_051482298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085667.1;locus_tag=LPH39_RS08285;product=two-component system response regulator;protein_id=WP_051482298.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2035607 2037763 . + . ID=gene-LPH39_RS08290;Name=LPH39_RS08290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08290;old_locus_tag=LPH39_08290 NZ_CP087677.1 Protein Homology CDS 2035607 2037763 . + 0 ID=cds-WP_038270895.1;Parent=gene-LPH39_RS08290;Dbxref=Genbank:WP_038270895.1;Name=WP_038270895.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237699.1;locus_tag=LPH39_RS08290;product=response regulator;protein_id=WP_038270895.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2037800 2038663 . - . ID=gene-LPH39_RS08295;Name=LPH39_RS08295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08295;old_locus_tag=LPH39_08295 NZ_CP087677.1 Protein Homology CDS 2037800 2038663 . - 0 ID=cds-WP_038270896.1;Parent=gene-LPH39_RS08295;Dbxref=Genbank:WP_038270896.1;Name=WP_038270896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850991.1;locus_tag=LPH39_RS08295;product=crotonase/enoyl-CoA hydratase family protein;protein_id=WP_038270896.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2039138 2041741 . + . ID=gene-LPH39_RS08300;Name=LPH39_RS08300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08300;old_locus_tag=LPH39_08300 NZ_CP087677.1 Protein Homology CDS 2039138 2041741 . + 0 ID=cds-WP_038270898.1;Parent=gene-LPH39_RS08300;Dbxref=Genbank:WP_038270898.1;Name=WP_038270898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085664.1;locus_tag=LPH39_RS08300;product=bifunctional aspartate kinase/diaminopimelate decarboxylase;protein_id=WP_038270898.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2041832 2043193 . + . ID=gene-LPH39_RS08305;Name=murL;gbkey=Gene;gene=murL;gene_biotype=protein_coding;locus_tag=LPH39_RS08305;old_locus_tag=LPH39_08305 NZ_CP087677.1 Protein Homology CDS 2041832 2043193 . + 0 ID=cds-WP_038270899.1;Parent=gene-LPH39_RS08305;Dbxref=Genbank:WP_038270899.1;Name=WP_038270899.1;Ontology_term=GO:0009252,GO:0016855;gbkey=CDS;gene=murL;go_function=racemase and epimerase activity%2C acting on amino acids and derivatives|0016855||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003470437.1;locus_tag=LPH39_RS08305;product=UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase;protein_id=WP_038270899.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2043174 2044577 . + . ID=gene-LPH39_RS08310;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=LPH39_RS08310;old_locus_tag=LPH39_08310 NZ_CP087677.1 Protein Homology CDS 2043174 2044577 . + 0 ID=cds-WP_038270900.1;Parent=gene-LPH39_RS08310;Dbxref=Genbank:WP_038270900.1;Name=WP_038270900.1;Ontology_term=GO:0009252,GO:0008764;gbkey=CDS;gene=murD;go_function=UDP-N-acetylmuramoylalanine-D-glutamate ligase activity|0008764||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085662.1;locus_tag=LPH39_RS08310;product=UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase;protein_id=WP_038270900.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2044800 2045048 . - . ID=gene-LPH39_RS08315;Name=LPH39_RS08315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08315;old_locus_tag=LPH39_08315 NZ_CP087677.1 GeneMarkS-2+ CDS 2044800 2045048 . - 0 ID=cds-WP_152536600.1;Parent=gene-LPH39_RS08315;Dbxref=Genbank:WP_152536600.1;Name=WP_152536600.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08315;product=hypothetical protein;protein_id=WP_152536600.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2045090 2045215 . + . ID=gene-LPH39_RS12045;Name=LPH39_RS12045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12045 NZ_CP087677.1 GeneMarkS-2+ CDS 2045090 2045215 . + 0 ID=cds-WP_267903171.1;Parent=gene-LPH39_RS12045;Dbxref=Genbank:WP_267903171.1;Name=WP_267903171.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12045;product=hypothetical protein;protein_id=WP_267903171.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2045249 2045392 . + . ID=gene-LPH39_RS08320;Name=LPH39_RS08320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08320;old_locus_tag=LPH39_08320 NZ_CP087677.1 GeneMarkS-2+ CDS 2045249 2045392 . + 0 ID=cds-WP_160165159.1;Parent=gene-LPH39_RS08320;Dbxref=Genbank:WP_160165159.1;Name=WP_160165159.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08320;product=hypothetical protein;protein_id=WP_160165159.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2047132 2047216 . - . ID=gene-LPH39_RS08325;Name=LPH39_RS08325;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS08325;old_locus_tag=LPH39_08325 NZ_CP087677.1 tRNAscan-SE tRNA 2047132 2047216 . - . ID=rna-LPH39_RS08325;Parent=gene-LPH39_RS08325;anticodon=(pos:complement(2047180..2047182));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08325;product=tRNA-Leu NZ_CP087677.1 tRNAscan-SE exon 2047132 2047216 . - . ID=exon-LPH39_RS08325-1;Parent=rna-LPH39_RS08325;anticodon=(pos:complement(2047180..2047182));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08325;product=tRNA-Leu NZ_CP087677.1 RefSeq gene 2047908 2048867 . + . ID=gene-LPH39_RS08330;Name=LPH39_RS08330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08330;old_locus_tag=LPH39_08330 NZ_CP087677.1 Protein Homology CDS 2047908 2048867 . + 0 ID=cds-WP_038270902.1;Parent=gene-LPH39_RS08330;Dbxref=Genbank:WP_038270902.1;Name=WP_038270902.1;Ontology_term=GO:0008413;gbkey=CDS;go_function=8-oxo-7%2C8-dihydroguanosine triphosphate pyrophosphatase activity|0008413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850994.1;locus_tag=LPH39_RS08330;product=Nudix family hydrolase;protein_id=WP_038270902.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2048880 2049149 . + . ID=gene-LPH39_RS08335;Name=LPH39_RS08335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08335;old_locus_tag=LPH39_08335 NZ_CP087677.1 GeneMarkS-2+ CDS 2048880 2049149 . + 0 ID=cds-WP_038270903.1;Parent=gene-LPH39_RS08335;Dbxref=Genbank:WP_038270903.1;Name=WP_038270903.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08335;product=hypothetical protein;protein_id=WP_038270903.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2049501 2050328 . - . ID=gene-LPH39_RS08340;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=LPH39_RS08340;old_locus_tag=LPH39_08340 NZ_CP087677.1 Protein Homology CDS 2049501 2050328 . - 0 ID=cds-WP_038270904.1;Parent=gene-LPH39_RS08340;Dbxref=Genbank:WP_038270904.1;Name=WP_038270904.1;Ontology_term=GO:0009086,GO:0004489;gbkey=CDS;gene=metF;go_function=methylenetetrahydrofolate reductase (NAD(P)H) activity|0004489||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850995.1;locus_tag=LPH39_RS08340;product=methylenetetrahydrofolate reductase [NAD(P)H];protein_id=WP_038270904.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2051495 2052229 . - . ID=gene-LPH39_RS08345;Name=LPH39_RS08345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08345;old_locus_tag=LPH39_08345 NZ_CP087677.1 Protein Homology CDS 2051495 2052229 . - 0 ID=cds-WP_038270905.1;Parent=gene-LPH39_RS08345;Dbxref=Genbank:WP_038270905.1;Name=WP_038270905.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893640.1;locus_tag=LPH39_RS08345;product=SIMPL domain-containing protein;protein_id=WP_038270905.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2052347 2052916 . + . ID=gene-LPH39_RS08350;Name=LPH39_RS08350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08350;old_locus_tag=LPH39_08350 NZ_CP087677.1 Protein Homology CDS 2052347 2052916 . + 0 ID=cds-WP_038271007.1;Parent=gene-LPH39_RS08350;Dbxref=Genbank:WP_038271007.1;Name=WP_038271007.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017915486.1;locus_tag=LPH39_RS08350;product=Maf-like protein;protein_id=WP_038271007.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2052917 2054413 . + . ID=gene-LPH39_RS08355;Name=rng;gbkey=Gene;gene=rng;gene_biotype=protein_coding;locus_tag=LPH39_RS08355;old_locus_tag=LPH39_08355 NZ_CP087677.1 Protein Homology CDS 2052917 2054413 . + 0 ID=cds-WP_038270906.1;Parent=gene-LPH39_RS08355;Dbxref=Genbank:WP_038270906.1;Name=WP_038270906.1;Ontology_term=GO:0006396,GO:0003723,GO:0004540;gbkey=CDS;gene=rng;go_function=RNA binding|0003723||IEA,ribonuclease activity|0004540||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802933.1;locus_tag=LPH39_RS08355;product=ribonuclease G;protein_id=WP_038270906.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2054569 2058369 . + . ID=gene-LPH39_RS08360;Name=LPH39_RS08360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08360;old_locus_tag=LPH39_08360 NZ_CP087677.1 Protein Homology CDS 2054569 2058369 . + 0 ID=cds-WP_230428165.1;Parent=gene-LPH39_RS08360;Dbxref=Genbank:WP_230428165.1;Name=WP_230428165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607624.1;locus_tag=LPH39_RS08360;product=YhdP family protein;protein_id=WP_230428165.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2058503 2059960 . + . ID=gene-LPH39_RS08365;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=LPH39_RS08365;old_locus_tag=LPH39_08365 NZ_CP087677.1 Protein Homology CDS 2058503 2059960 . + 0 ID=cds-WP_038270908.1;Parent=gene-LPH39_RS08365;Dbxref=Genbank:WP_038270908.1;Name=WP_038270908.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=tldD;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972594.1;locus_tag=LPH39_RS08365;product=metalloprotease TldD;protein_id=WP_038270908.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2060467 2061018 . - . ID=gene-LPH39_RS08370;Name=LPH39_RS08370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08370;old_locus_tag=LPH39_08370 NZ_CP087677.1 Protein Homology CDS 2060467 2061018 . - 0 ID=cds-WP_038271008.1;Parent=gene-LPH39_RS08370;Dbxref=Genbank:WP_038271008.1;Name=WP_038271008.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090049.1;locus_tag=LPH39_RS08370;product=ribosome-associated protein;protein_id=WP_038271008.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2061096 2062463 . + . ID=gene-LPH39_RS08375;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;locus_tag=LPH39_RS08375;old_locus_tag=LPH39_08375 NZ_CP087677.1 Protein Homology CDS 2061096 2062463 . + 0 ID=cds-WP_038270909.1;Parent=gene-LPH39_RS08375;Dbxref=Genbank:WP_038270909.1;Name=WP_038270909.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=pmbA;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090050.1;locus_tag=LPH39_RS08375;product=metalloprotease PmbA;protein_id=WP_038270909.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2062531 2063265 . + . ID=gene-LPH39_RS12050;Name=LPH39_RS12050;end_range=2063265,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS12050;partial=true;pseudo=true;start_range=.,2062531 NZ_CP087677.1 Protein Homology CDS 2062531 2063265 . + 0 ID=cds-LPH39_RS12050;Parent=gene-LPH39_RS12050;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2063265,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003092331.1;locus_tag=LPH39_RS12050;partial=true;product=PDDEXK nuclease domain-containing protein;pseudo=true;start_range=.,2062531;transl_table=11 NZ_CP087677.1 RefSeq gene 2063454 2063539 . + . ID=gene-LPH39_RS08390;Name=LPH39_RS08390;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS08390;old_locus_tag=LPH39_08390 NZ_CP087677.1 tRNAscan-SE tRNA 2063454 2063539 . + . ID=rna-LPH39_RS08390;Parent=gene-LPH39_RS08390;anticodon=(pos:2063486..2063488);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08390;product=tRNA-Ser NZ_CP087677.1 tRNAscan-SE exon 2063454 2063539 . + . ID=exon-LPH39_RS08390-1;Parent=rna-LPH39_RS08390;anticodon=(pos:2063486..2063488);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08390;product=tRNA-Ser NZ_CP087677.1 RefSeq gene 2063605 2064072 . - . ID=gene-LPH39_RS08395;Name=LPH39_RS08395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08395;old_locus_tag=LPH39_08395 NZ_CP087677.1 Protein Homology CDS 2063605 2064072 . - 0 ID=cds-WP_038270910.1;Parent=gene-LPH39_RS08395;Dbxref=Genbank:WP_038270910.1;Name=WP_038270910.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015824.2;locus_tag=LPH39_RS08395;product=YfbU family protein;protein_id=WP_038270910.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2064864 2065274 . - . ID=gene-LPH39_RS08400;Name=LPH39_RS08400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08400;old_locus_tag=LPH39_08400 NZ_CP087677.1 Protein Homology CDS 2064864 2065274 . - 0 ID=cds-WP_201745835.1;Parent=gene-LPH39_RS08400;Dbxref=Genbank:WP_201745835.1;Name=WP_201745835.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015925.2;locus_tag=LPH39_RS08400;product=putative quinol monooxygenase;protein_id=WP_201745835.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2065594 2066508 . - . ID=gene-LPH39_RS08405;Name=LPH39_RS08405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08405;old_locus_tag=LPH39_08405 NZ_CP087677.1 Protein Homology CDS 2065594 2066508 . - 0 ID=cds-WP_038271010.1;Parent=gene-LPH39_RS08405;Dbxref=Genbank:WP_038271010.1;Name=WP_038271010.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017916574.1;locus_tag=LPH39_RS08405;product=LysR family transcriptional regulator;protein_id=WP_038271010.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2066687 2067256 . + . ID=gene-LPH39_RS08410;Name=LPH39_RS08410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08410;old_locus_tag=LPH39_08410 NZ_CP087677.1 Protein Homology CDS 2066687 2067256 . + 0 ID=cds-WP_038270913.1;Parent=gene-LPH39_RS08410;Dbxref=Genbank:WP_038270913.1;Name=WP_038270913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852528.1;locus_tag=LPH39_RS08410;product=flavodoxin family protein;protein_id=WP_038270913.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2067294 2067593 . + . ID=gene-LPH39_RS08415;Name=LPH39_RS08415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08415;old_locus_tag=LPH39_08415 NZ_CP087677.1 Protein Homology CDS 2067294 2067593 . + 0 ID=cds-WP_038270915.1;Parent=gene-LPH39_RS08415;Dbxref=Genbank:WP_038270915.1;Name=WP_038270915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852527.1;locus_tag=LPH39_RS08415;product=superoxide dismutase;protein_id=WP_038270915.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2067682 2068740 . + . ID=gene-LPH39_RS08420;Name=LPH39_RS08420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08420;old_locus_tag=LPH39_08420 NZ_CP087677.1 Protein Homology CDS 2067682 2068740 . + 0 ID=cds-WP_038270917.1;Parent=gene-LPH39_RS08420;Dbxref=Genbank:WP_038270917.1;Name=WP_038270917.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852526.1;locus_tag=LPH39_RS08420;product=NAD(P)-dependent alcohol dehydrogenase;protein_id=WP_038270917.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2068745 2069434 . + . ID=gene-LPH39_RS08425;Name=LPH39_RS08425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08425;old_locus_tag=LPH39_08425 NZ_CP087677.1 Protein Homology CDS 2068745 2069434 . + 0 ID=cds-WP_038270918.1;Parent=gene-LPH39_RS08425;Dbxref=Genbank:WP_038270918.1;Name=WP_038270918.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893654.1;locus_tag=LPH39_RS08425;product=type 1 glutamine amidotransferase domain-containing protein;protein_id=WP_038270918.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2070290 2070493 . + . ID=gene-LPH39_RS08430;Name=LPH39_RS08430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08430;old_locus_tag=LPH39_08430 NZ_CP087677.1 GeneMarkS-2+ CDS 2070290 2070493 . + 0 ID=cds-WP_051482293.1;Parent=gene-LPH39_RS08430;Dbxref=Genbank:WP_051482293.1;Name=WP_051482293.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08430;product=hypothetical protein;protein_id=WP_051482293.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2070561 2071544 . + . ID=gene-LPH39_RS08435;Name=LPH39_RS08435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08435;old_locus_tag=LPH39_08435 NZ_CP087677.1 Protein Homology CDS 2070561 2071544 . + 0 ID=cds-WP_038270920.1;Parent=gene-LPH39_RS08435;Dbxref=Genbank:WP_038270920.1;Name=WP_038270920.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007508381.1;locus_tag=LPH39_RS08435;product=aldo/keto reductase;protein_id=WP_038270920.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2071766 2072398 . + . ID=gene-LPH39_RS08440;Name=LPH39_RS08440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08440;old_locus_tag=LPH39_08440 NZ_CP087677.1 Protein Homology CDS 2071766 2072398 . + 0 ID=cds-WP_200866193.1;Parent=gene-LPH39_RS08440;Dbxref=Genbank:WP_200866193.1;Name=WP_200866193.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: protein motif:HMM:NF016777.2;locus_tag=LPH39_RS08440;product=amidohydrolase family protein;protein_id=WP_200866193.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2072740 2073261 . + . ID=gene-LPH39_RS08445;Name=LPH39_RS08445;end_range=2073261,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS08445;old_locus_tag=LPH39_08445;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 2072740 2073261 . + 0 ID=cds-LPH39_RS08445;Parent=gene-LPH39_RS08445;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003700;end_range=2073261,.;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011657241.1;locus_tag=LPH39_RS08445;partial=true;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2074354 2075721 . - . ID=gene-LPH39_RS08450;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=LPH39_RS08450;old_locus_tag=LPH39_08450 NZ_CP087677.1 Protein Homology CDS 2074354 2075721 . - 0 ID=cds-WP_038271011.1;Parent=gene-LPH39_RS08450;Dbxref=Genbank:WP_038271011.1;Name=WP_038271011.1;Ontology_term=GO:0009103,GO:0009252,GO:0003977,GO:0019134,GO:0005737;gbkey=CDS;gene=glmU;go_component=cytoplasm|0005737||IEA;go_function=UDP-N-acetylglucosamine diphosphorylase activity|0003977||IEA,glucosamine-1-phosphate N-acetyltransferase activity|0019134||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407581.1;locus_tag=LPH39_RS08450;product=bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;protein_id=WP_038271011.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2076084 2076659 . - . ID=gene-LPH39_RS08455;Name=LPH39_RS08455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08455;old_locus_tag=LPH39_08455 NZ_CP087677.1 Protein Homology CDS 2076084 2076659 . - 0 ID=cds-WP_038270923.1;Parent=gene-LPH39_RS08455;Dbxref=Genbank:WP_038270923.1;Name=WP_038270923.1;Ontology_term=GO:0046417;gbkey=CDS;go_process=chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852523.1;locus_tag=LPH39_RS08455;product=chorismate mutase;protein_id=WP_038270923.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2076926 2077348 . - . ID=gene-LPH39_RS08460;Name=LPH39_RS08460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08460;old_locus_tag=LPH39_08460 NZ_CP087677.1 Protein Homology CDS 2076926 2077348 . - 0 ID=cds-WP_038270925.1;Parent=gene-LPH39_RS08460;Dbxref=Genbank:WP_038270925.1;Name=WP_038270925.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407577.1;locus_tag=LPH39_RS08460;product=F0F1 ATP synthase subunit epsilon;protein_id=WP_038270925.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2077455 2078855 . - . ID=gene-LPH39_RS08465;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=LPH39_RS08465;old_locus_tag=LPH39_08465 NZ_CP087677.1 Protein Homology CDS 2077455 2078855 . - 0 ID=cds-WP_038270927.1;Parent=gene-LPH39_RS08465;Dbxref=Genbank:WP_038270927.1;Name=WP_038270927.1;Ontology_term=GO:0015986,GO:0046933,GO:0000275,GO:0045261,GO:0045262;gbkey=CDS;gene=atpD;go_component=mitochondrial proton-transporting ATP synthase complex%2C catalytic sector F(1)|0000275||IEA,proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA,plasma membrane proton-transporting ATP synthase complex%2C catalytic core F(1)|0045262||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090068.1;locus_tag=LPH39_RS08465;product=F0F1 ATP synthase subunit beta;protein_id=WP_038270927.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2078935 2079798 . - . ID=gene-LPH39_RS08470;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;locus_tag=LPH39_RS08470;old_locus_tag=LPH39_08470 NZ_CP087677.1 Protein Homology CDS 2078935 2079798 . - 0 ID=cds-WP_038270929.1;Parent=gene-LPH39_RS08470;Dbxref=Genbank:WP_038270929.1;Name=WP_038270929.1;Ontology_term=GO:0015986,GO:0046933,GO:0045261;gbkey=CDS;gene=atpG;go_component=proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371995.1;locus_tag=LPH39_RS08470;product=F0F1 ATP synthase subunit gamma;protein_id=WP_038270929.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2079890 2081437 . - . ID=gene-LPH39_RS08475;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=LPH39_RS08475;old_locus_tag=LPH39_08475 NZ_CP087677.1 Protein Homology CDS 2079890 2081437 . - 0 ID=cds-WP_038270931.1;Parent=gene-LPH39_RS08475;Dbxref=Genbank:WP_038270931.1;Name=WP_038270931.1;Ontology_term=GO:0015986,GO:0046933,GO:0000275,GO:0045261,GO:0045262;gbkey=CDS;gene=atpA;go_component=mitochondrial proton-transporting ATP synthase complex%2C catalytic sector F(1)|0000275||IEA,proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA,plasma membrane proton-transporting ATP synthase complex%2C catalytic core F(1)|0045262||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161761.1;locus_tag=LPH39_RS08475;product=F0F1 ATP synthase subunit alpha;protein_id=WP_038270931.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2081485 2082012 . - . ID=gene-LPH39_RS08480;Name=LPH39_RS08480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08480;old_locus_tag=LPH39_08480 NZ_CP087677.1 Protein Homology CDS 2081485 2082012 . - 0 ID=cds-WP_038270933.1;Parent=gene-LPH39_RS08480;Dbxref=Genbank:WP_038270933.1;Name=WP_038270933.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304550.1;locus_tag=LPH39_RS08480;product=F0F1 ATP synthase subunit delta;protein_id=WP_038270933.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2082016 2082486 . - . ID=gene-LPH39_RS08485;Name=LPH39_RS08485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08485;old_locus_tag=LPH39_08485 NZ_CP087677.1 Protein Homology CDS 2082016 2082486 . - 0 ID=cds-WP_038270934.1;Parent=gene-LPH39_RS08485;Dbxref=Genbank:WP_038270934.1;Name=WP_038270934.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901014.1;locus_tag=LPH39_RS08485;product=F0F1 ATP synthase subunit B;protein_id=WP_038270934.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2082610 2082915 . - . ID=gene-LPH39_RS08490;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;locus_tag=LPH39_RS08490;old_locus_tag=LPH39_08490 NZ_CP087677.1 Protein Homology CDS 2082610 2082915 . - 0 ID=cds-WP_038270935.1;Parent=gene-LPH39_RS08490;Dbxref=Genbank:WP_038270935.1;Name=WP_038270935.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpE;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372004.1;locus_tag=LPH39_RS08490;product=F0F1 ATP synthase subunit C;protein_id=WP_038270935.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2082977 2083774 . - . ID=gene-LPH39_RS08495;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;locus_tag=LPH39_RS08495;old_locus_tag=LPH39_08495 NZ_CP087677.1 Protein Homology CDS 2082977 2083774 . - 0 ID=cds-WP_038270936.1;Parent=gene-LPH39_RS08495;Dbxref=Genbank:WP_038270936.1;Name=WP_038270936.1;Ontology_term=GO:0015986,GO:0015078,GO:0045263;gbkey=CDS;gene=atpB;go_component=proton-transporting ATP synthase complex%2C coupling factor F(o)|0045263||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814108.1;locus_tag=LPH39_RS08495;product=F0F1 ATP synthase subunit A;protein_id=WP_038270936.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2083803 2084174 . - . ID=gene-LPH39_RS08500;Name=LPH39_RS08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08500;old_locus_tag=LPH39_08500 NZ_CP087677.1 Protein Homology CDS 2083803 2084174 . - 0 ID=cds-WP_038270937.1;Parent=gene-LPH39_RS08500;Dbxref=Genbank:WP_038270937.1;Name=WP_038270937.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893667.1;locus_tag=LPH39_RS08500;product=hypothetical protein;protein_id=WP_038270937.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2085237 2085548 . + . ID=gene-LPH39_RS08505;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=LPH39_RS08505;old_locus_tag=LPH39_08505 NZ_CP087677.1 Protein Homology CDS 2085237 2085548 . + 0 ID=cds-WP_038270938.1;Parent=gene-LPH39_RS08505;Dbxref=Genbank:WP_038270938.1;Name=WP_038270938.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsJ;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160477.1;locus_tag=LPH39_RS08505;product=30S ribosomal protein S10;protein_id=WP_038270938.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2085560 2086207 . + . ID=gene-LPH39_RS08510;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=LPH39_RS08510;old_locus_tag=LPH39_08510 NZ_CP087677.1 Protein Homology CDS 2085560 2086207 . + 0 ID=cds-WP_038270939.1;Parent=gene-LPH39_RS08510;Dbxref=Genbank:WP_038270939.1;Name=WP_038270939.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337684.1;locus_tag=LPH39_RS08510;product=50S ribosomal protein L3;protein_id=WP_038270939.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2086219 2086824 . + . ID=gene-LPH39_RS08515;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=LPH39_RS08515;old_locus_tag=LPH39_08515 NZ_CP087677.1 Protein Homology CDS 2086219 2086824 . + 0 ID=cds-WP_038270940.1;Parent=gene-LPH39_RS08515;Dbxref=Genbank:WP_038270940.1;Name=WP_038270940.1;Ontology_term=GO:0006412,GO:0003735,GO:0022625;gbkey=CDS;gene=rplD;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371054.1;locus_tag=LPH39_RS08515;product=50S ribosomal protein L4;protein_id=WP_038270940.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2086821 2087123 . + . ID=gene-LPH39_RS08520;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=LPH39_RS08520;old_locus_tag=LPH39_08520 NZ_CP087677.1 Protein Homology CDS 2086821 2087123 . + 0 ID=cds-WP_081755424.1;Parent=gene-LPH39_RS08520;Dbxref=Genbank:WP_081755424.1;Name=WP_081755424.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplW;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090096.1;locus_tag=LPH39_RS08520;product=50S ribosomal protein L23;protein_id=WP_081755424.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2087134 2087961 . + . ID=gene-LPH39_RS08525;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=LPH39_RS08525;old_locus_tag=LPH39_08525 NZ_CP087677.1 Protein Homology CDS 2087134 2087961 . + 0 ID=cds-WP_038270942.1;Parent=gene-LPH39_RS08525;Dbxref=Genbank:WP_038270942.1;Name=WP_038270942.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplB;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009607340.1;locus_tag=LPH39_RS08525;product=50S ribosomal protein L2;protein_id=WP_038270942.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2087968 2088237 . + . ID=gene-LPH39_RS08530;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=LPH39_RS08530;old_locus_tag=LPH39_08530 NZ_CP087677.1 Protein Homology CDS 2087968 2088237 . + 0 ID=cds-WP_038270943.1;Parent=gene-LPH39_RS08530;Dbxref=Genbank:WP_038270943.1;Name=WP_038270943.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsS;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086525.1;locus_tag=LPH39_RS08530;product=30S ribosomal protein S19;protein_id=WP_038270943.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2088250 2088585 . + . ID=gene-LPH39_RS08535;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=LPH39_RS08535;old_locus_tag=LPH39_08535 NZ_CP087677.1 Protein Homology CDS 2088250 2088585 . + 0 ID=cds-WP_038270944.1;Parent=gene-LPH39_RS08535;Dbxref=Genbank:WP_038270944.1;Name=WP_038270944.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplV;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486710.1;locus_tag=LPH39_RS08535;product=50S ribosomal protein L22;protein_id=WP_038270944.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2088604 2089323 . + . ID=gene-LPH39_RS08540;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=LPH39_RS08540;old_locus_tag=LPH39_08540 NZ_CP087677.1 Protein Homology CDS 2088604 2089323 . + 0 ID=cds-WP_038270945.1;Parent=gene-LPH39_RS08540;Dbxref=Genbank:WP_038270945.1;Name=WP_038270945.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsC;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086530.1;locus_tag=LPH39_RS08540;product=30S ribosomal protein S3;protein_id=WP_038270945.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2089329 2089742 . + . ID=gene-LPH39_RS08545;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=LPH39_RS08545;old_locus_tag=LPH39_08545 NZ_CP087677.1 Protein Homology CDS 2089329 2089742 . + 0 ID=cds-WP_038270946.1;Parent=gene-LPH39_RS08545;Dbxref=Genbank:WP_038270946.1;Name=WP_038270946.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplP;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003479591.1;locus_tag=LPH39_RS08545;product=50S ribosomal protein L16;protein_id=WP_038270946.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2089742 2089939 . + . ID=gene-LPH39_RS08550;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=LPH39_RS08550;old_locus_tag=LPH39_08550 NZ_CP087677.1 Protein Homology CDS 2089742 2089939 . + 0 ID=cds-WP_038270947.1;Parent=gene-LPH39_RS08550;Dbxref=Genbank:WP_038270947.1;Name=WP_038270947.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmC;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090108.1;locus_tag=LPH39_RS08550;product=50S ribosomal protein L29;protein_id=WP_038270947.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2089939 2090205 . + . ID=gene-LPH39_RS08555;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=LPH39_RS08555;old_locus_tag=LPH39_08555 NZ_CP087677.1 Protein Homology CDS 2089939 2090205 . + 0 ID=cds-WP_038270948.1;Parent=gene-LPH39_RS08555;Dbxref=Genbank:WP_038270948.1;Name=WP_038270948.1;Ontology_term=GO:0006412,GO:0003735,GO:0022627;gbkey=CDS;gene=rpsQ;go_component=cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993374.1;locus_tag=LPH39_RS08555;product=30S ribosomal protein S17;protein_id=WP_038270948.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2090229 2090597 . + . ID=gene-LPH39_RS08560;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=LPH39_RS08560;old_locus_tag=LPH39_08560 NZ_CP087677.1 Protein Homology CDS 2090229 2090597 . + 0 ID=cds-WP_038270950.1;Parent=gene-LPH39_RS08560;Dbxref=Genbank:WP_038270950.1;Name=WP_038270950.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplN;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012728338.1;locus_tag=LPH39_RS08560;product=50S ribosomal protein L14;protein_id=WP_038270950.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2090613 2090930 . + . ID=gene-LPH39_RS08565;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=LPH39_RS08565;old_locus_tag=LPH39_08565 NZ_CP087677.1 Protein Homology CDS 2090613 2090930 . + 0 ID=cds-WP_038271012.1;Parent=gene-LPH39_RS08565;Dbxref=Genbank:WP_038271012.1;Name=WP_038271012.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplX;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260025.1;locus_tag=LPH39_RS08565;product=50S ribosomal protein L24;protein_id=WP_038271012.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2090942 2091481 . + . ID=gene-LPH39_RS08570;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=LPH39_RS08570;old_locus_tag=LPH39_08570 NZ_CP087677.1 Protein Homology CDS 2090942 2091481 . + 0 ID=cds-WP_038270952.1;Parent=gene-LPH39_RS08570;Dbxref=Genbank:WP_038270952.1;Name=WP_038270952.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852426.1;locus_tag=LPH39_RS08570;product=50S ribosomal protein L5;protein_id=WP_038270952.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2091497 2091802 . + . ID=gene-LPH39_RS08575;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=LPH39_RS08575;old_locus_tag=LPH39_08575 NZ_CP087677.1 Protein Homology CDS 2091497 2091802 . + 0 ID=cds-WP_081755425.1;Parent=gene-LPH39_RS08575;Dbxref=Genbank:WP_081755425.1;Name=WP_081755425.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsN;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917137.1;locus_tag=LPH39_RS08575;product=30S ribosomal protein S14;protein_id=WP_081755425.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2091950 2092348 . + . ID=gene-LPH39_RS08580;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=LPH39_RS08580;old_locus_tag=LPH39_08580 NZ_CP087677.1 Protein Homology CDS 2091950 2092348 . + 0 ID=cds-WP_038270953.1;Parent=gene-LPH39_RS08580;Dbxref=Genbank:WP_038270953.1;Name=WP_038270953.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsH;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932726.1;locus_tag=LPH39_RS08580;product=30S ribosomal protein S8;protein_id=WP_038270953.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2092368 2092895 . + . ID=gene-LPH39_RS08585;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=LPH39_RS08585;old_locus_tag=LPH39_08585 NZ_CP087677.1 Protein Homology CDS 2092368 2092895 . + 0 ID=cds-WP_038270954.1;Parent=gene-LPH39_RS08585;Dbxref=Genbank:WP_038270954.1;Name=WP_038270954.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0022625;gbkey=CDS;gene=rplF;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450642.1;locus_tag=LPH39_RS08585;product=50S ribosomal protein L6;protein_id=WP_038270954.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2092953 2093312 . + . ID=gene-LPH39_RS08590;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=LPH39_RS08590;old_locus_tag=LPH39_08590 NZ_CP087677.1 Protein Homology CDS 2092953 2093312 . + 0 ID=cds-WP_038270955.1;Parent=gene-LPH39_RS08590;Dbxref=Genbank:WP_038270955.1;Name=WP_038270955.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplR;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811659.1;locus_tag=LPH39_RS08590;product=50S ribosomal protein L18;protein_id=WP_038270955.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2093490 2094026 . + . ID=gene-LPH39_RS08595;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=LPH39_RS08595;old_locus_tag=LPH39_08595 NZ_CP087677.1 Protein Homology CDS 2093490 2094026 . + 0 ID=cds-WP_051482296.1;Parent=gene-LPH39_RS08595;Dbxref=Genbank:WP_051482296.1;Name=WP_051482296.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsE;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090125.1;locus_tag=LPH39_RS08595;product=30S ribosomal protein S5;protein_id=WP_051482296.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2094019 2094210 . + . ID=gene-LPH39_RS08600;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=LPH39_RS08600;old_locus_tag=LPH39_08600 NZ_CP087677.1 Protein Homology CDS 2094019 2094210 . + 0 ID=cds-WP_038270956.1;Parent=gene-LPH39_RS08600;Dbxref=Genbank:WP_038270956.1;Name=WP_038270956.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmD;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486678.1;locus_tag=LPH39_RS08600;product=50S ribosomal protein L30;protein_id=WP_038270956.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2094217 2094660 . + . ID=gene-LPH39_RS08605;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=LPH39_RS08605;old_locus_tag=LPH39_08605 NZ_CP087677.1 Protein Homology CDS 2094217 2094660 . + 0 ID=cds-WP_069636208.1;Parent=gene-LPH39_RS08605;Dbxref=Genbank:WP_069636208.1;Name=WP_069636208.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplO;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486676.1;locus_tag=LPH39_RS08605;product=50S ribosomal protein L15;protein_id=WP_069636208.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2094668 2096041 . + . ID=gene-LPH39_RS08610;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=LPH39_RS08610;old_locus_tag=LPH39_08610 NZ_CP087677.1 Protein Homology CDS 2094668 2096041 . + 0 ID=cds-WP_038271017.1;Parent=gene-LPH39_RS08610;Dbxref=Genbank:WP_038271017.1;Name=WP_038271017.1;Ontology_term=GO:0043952,GO:0015450,GO:0005886;gbkey=CDS;gene=secY;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852429.1;locus_tag=LPH39_RS08610;product=preprotein translocase subunit SecY;protein_id=WP_038271017.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2096347 2096703 . + . ID=gene-LPH39_RS08615;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=LPH39_RS08615;old_locus_tag=LPH39_08615 NZ_CP087677.1 Protein Homology CDS 2096347 2096703 . + 0 ID=cds-WP_038270958.1;Parent=gene-LPH39_RS08615;Dbxref=Genbank:WP_038270958.1;Name=WP_038270958.1;Ontology_term=GO:0006412,GO:0003735,GO:0022627;gbkey=CDS;gene=rpsM;go_component=cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019935869.1;locus_tag=LPH39_RS08615;product=30S ribosomal protein S13;protein_id=WP_038270958.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2096717 2097109 . + . ID=gene-LPH39_RS08620;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=LPH39_RS08620;old_locus_tag=LPH39_08620 NZ_CP087677.1 Protein Homology CDS 2096717 2097109 . + 0 ID=cds-WP_038270959.1;Parent=gene-LPH39_RS08620;Dbxref=Genbank:WP_038270959.1;Name=WP_038270959.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090135.1;locus_tag=LPH39_RS08620;product=30S ribosomal protein S11;protein_id=WP_038270959.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2097124 2097750 . + . ID=gene-LPH39_RS08625;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=LPH39_RS08625;old_locus_tag=LPH39_08625 NZ_CP087677.1 Protein Homology CDS 2097124 2097750 . + 0 ID=cds-WP_038270961.1;Parent=gene-LPH39_RS08625;Dbxref=Genbank:WP_038270961.1;Name=WP_038270961.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0015935;gbkey=CDS;gene=rpsD;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004145446.1;locus_tag=LPH39_RS08625;product=30S ribosomal protein S4;protein_id=WP_038270961.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2097805 2098803 . + . ID=gene-LPH39_RS08630;Name=rpoA;gbkey=Gene;gene=rpoA;gene_biotype=protein_coding;locus_tag=LPH39_RS08630;old_locus_tag=LPH39_08630 NZ_CP087677.1 Protein Homology CDS 2097805 2098803 . + 0 ID=cds-WP_038270963.1;Parent=gene-LPH39_RS08630;Dbxref=Genbank:WP_038270963.1;Name=WP_038270963.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899,GO:0046983;gbkey=CDS;gene=rpoA;go_function=DNA binding|0003677||IEA,DNA-directed 5'-3' RNA polymerase activity|0003899||IEA,protein dimerization activity|0046983||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852431.1;locus_tag=LPH39_RS08630;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_038270963.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2099029 2099412 . + . ID=gene-LPH39_RS08635;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=LPH39_RS08635;old_locus_tag=LPH39_08635 NZ_CP087677.1 Protein Homology CDS 2099029 2099412 . + 0 ID=cds-WP_038270964.1;Parent=gene-LPH39_RS08635;Dbxref=Genbank:WP_038270964.1;Name=WP_038270964.1;Ontology_term=GO:0006412,GO:0003735,GO:0005762,GO:0022625;gbkey=CDS;gene=rplQ;go_component=mitochondrial large ribosomal subunit|0005762||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340456.1;locus_tag=LPH39_RS08635;product=50S ribosomal protein L17;protein_id=WP_038270964.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2100865 2101125 . + . ID=gene-LPH39_RS08640;Name=LPH39_RS08640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08640;old_locus_tag=LPH39_08640 NZ_CP087677.1 Protein Homology CDS 2100865 2101125 . + 0 ID=cds-WP_038270966.1;Parent=gene-LPH39_RS08640;Dbxref=Genbank:WP_038270966.1;Name=WP_038270966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086547.1;locus_tag=LPH39_RS08640;product=accessory factor UbiK family protein;protein_id=WP_038270966.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2101136 2102656 . + . ID=gene-LPH39_RS08645;Name=LPH39_RS08645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08645;old_locus_tag=LPH39_08645 NZ_CP087677.1 Protein Homology CDS 2101136 2102656 . + 0 ID=cds-WP_038270967.1;Parent=gene-LPH39_RS08645;Dbxref=Genbank:WP_038270967.1;Name=WP_038270967.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852434.1;locus_tag=LPH39_RS08645;product=YifB family Mg chelatase-like AAA ATPase;protein_id=WP_038270967.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2104393 2105334 . + . ID=gene-LPH39_RS08650;Name=LPH39_RS08650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08650;old_locus_tag=LPH39_08650 NZ_CP087677.1 Protein Homology CDS 2104393 2105334 . + 0 ID=cds-WP_230428167.1;Parent=gene-LPH39_RS08650;Dbxref=Genbank:WP_230428167.1;Name=WP_230428167.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012770.2;locus_tag=LPH39_RS08650;product=triacylglycerol lipase;protein_id=WP_230428167.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2105335 2106384 . + . ID=gene-LPH39_RS08655;Name=LPH39_RS08655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS08655;old_locus_tag=LPH39_08655;pseudo=true NZ_CP087677.1 Protein Homology CDS 2105335 2106384 . + 0 ID=cds-LPH39_RS08655;Parent=gene-LPH39_RS08655;Note=internal stop;Ontology_term=GO:0006457,GO:0051082,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097653.1;locus_tag=LPH39_RS08655;product=lipase secretion chaperone;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2107069 2107155 . - . ID=gene-LPH39_RS08660;Name=LPH39_RS08660;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS08660;old_locus_tag=LPH39_08660 NZ_CP087677.1 tRNAscan-SE tRNA 2107069 2107155 . - . ID=rna-LPH39_RS08660;Parent=gene-LPH39_RS08660;anticodon=(pos:complement(2107119..2107121));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08660;product=tRNA-Leu NZ_CP087677.1 tRNAscan-SE exon 2107069 2107155 . - . ID=exon-LPH39_RS08660-1;Parent=rna-LPH39_RS08660;anticodon=(pos:complement(2107119..2107121));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08660;product=tRNA-Leu NZ_CP087677.1 RefSeq gene 2107291 2108583 . + . ID=gene-LPH39_RS08665;Name=LPH39_RS08665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08665;old_locus_tag=LPH39_08665 NZ_CP087677.1 Protein Homology CDS 2107291 2108583 . + 0 ID=cds-WP_038270969.1;Parent=gene-LPH39_RS08665;Dbxref=Genbank:WP_038270969.1;Name=WP_038270969.1;Ontology_term=GO:0000271,GO:0003979,GO:0016616,GO:0051287;gbkey=CDS;go_function=UDP-glucose 6-dehydrogenase activity|0003979||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852438.1;locus_tag=LPH39_RS08665;product=nucleotide sugar dehydrogenase;protein_id=WP_038270969.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2110615 2111076 . - . ID=gene-LPH39_RS08670;Name=LPH39_RS08670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08670;old_locus_tag=LPH39_08670 NZ_CP087677.1 Protein Homology CDS 2110615 2111076 . - 0 ID=cds-WP_038270971.1;Parent=gene-LPH39_RS08670;Dbxref=Genbank:WP_038270971.1;Name=WP_038270971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852439.1;locus_tag=LPH39_RS08670;product=hypothetical protein;protein_id=WP_038270971.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2112481 2112564 . - . ID=gene-LPH39_RS08675;Name=LPH39_RS08675;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS08675;old_locus_tag=LPH39_08675 NZ_CP087677.1 tRNAscan-SE tRNA 2112481 2112564 . - . ID=rna-LPH39_RS08675;Parent=gene-LPH39_RS08675;anticodon=(pos:complement(2112528..2112530));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08675;product=tRNA-Leu NZ_CP087677.1 tRNAscan-SE exon 2112481 2112564 . - . ID=exon-LPH39_RS08675-1;Parent=rna-LPH39_RS08675;anticodon=(pos:complement(2112528..2112530));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08675;product=tRNA-Leu NZ_CP087677.1 RefSeq gene 2112972 2114267 . + . ID=gene-LPH39_RS08680;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=LPH39_RS08680;old_locus_tag=LPH39_08680 NZ_CP087677.1 Protein Homology CDS 2112972 2114267 . + 0 ID=cds-WP_038270973.1;Parent=gene-LPH39_RS08680;Dbxref=Genbank:WP_038270973.1;Name=WP_038270973.1;Ontology_term=GO:0051083,GO:0003755,GO:0051082,GO:0005854;gbkey=CDS;gene=tig;go_component=nascent polypeptide-associated complex|0005854||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,unfolded protein binding|0051082||IEA;go_process='de novo' cotranslational protein folding|0051083||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852440.1;locus_tag=LPH39_RS08680;product=trigger factor;protein_id=WP_038270973.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2114414 2115040 . + . ID=gene-LPH39_RS08685;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=LPH39_RS08685;old_locus_tag=LPH39_08685 NZ_CP087677.1 Protein Homology CDS 2114414 2115040 . + 0 ID=cds-WP_038270975.1;Parent=gene-LPH39_RS08685;Dbxref=Genbank:WP_038270975.1;Name=WP_038270975.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0009368;gbkey=CDS;gene=clpP;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806026.1;locus_tag=LPH39_RS08685;product=ATP-dependent Clp endopeptidase proteolytic subunit ClpP;protein_id=WP_038270975.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2115161 2116441 . + . ID=gene-LPH39_RS08690;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=LPH39_RS08690;old_locus_tag=LPH39_08690 NZ_CP087677.1 Protein Homology CDS 2115161 2116441 . + 0 ID=cds-WP_038270976.1;Parent=gene-LPH39_RS08690;Dbxref=Genbank:WP_038270976.1;Name=WP_038270976.1;Ontology_term=GO:0005524,GO:0008270,GO:0016887,GO:0046983;gbkey=CDS;gene=clpX;go_function=ATP binding|0005524||IEA,zinc ion binding|0008270||IEA,ATP hydrolysis activity|0016887||IEA,protein dimerization activity|0046983||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451747.1;locus_tag=LPH39_RS08690;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=WP_038270976.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2116591 2119059 . + . ID=gene-LPH39_RS08695;Name=lon;gbkey=Gene;gene=lon;gene_biotype=protein_coding;locus_tag=LPH39_RS08695;old_locus_tag=LPH39_08695 NZ_CP087677.1 Protein Homology CDS 2116591 2119059 . + 0 ID=cds-WP_038270977.1;Parent=gene-LPH39_RS08695;Dbxref=Genbank:WP_038270977.1;Name=WP_038270977.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0016887,GO:0043565;gbkey=CDS;gene=lon;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA,ATP hydrolysis activity|0016887||IEA,sequence-specific DNA binding|0043565||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852269.1;locus_tag=LPH39_RS08695;product=endopeptidase La;protein_id=WP_038270977.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2119280 2119564 . + . ID=gene-LPH39_RS08700;Name=LPH39_RS08700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08700;old_locus_tag=LPH39_08700 NZ_CP087677.1 Protein Homology CDS 2119280 2119564 . + 0 ID=cds-WP_038270979.1;Parent=gene-LPH39_RS08700;Dbxref=Genbank:WP_038270979.1;Name=WP_038270979.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904732.1;locus_tag=LPH39_RS08700;product=HU family DNA-binding protein;protein_id=WP_038270979.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2119566 2119640 . + . ID=gene-LPH39_RS08705;Name=LPH39_RS08705;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS08705;old_locus_tag=LPH39_08705 NZ_CP087677.1 tRNAscan-SE tRNA 2119566 2119640 . + . ID=rna-LPH39_RS08705;Parent=gene-LPH39_RS08705;anticodon=(pos:2119598..2119600);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08705;product=tRNA-Val NZ_CP087677.1 tRNAscan-SE exon 2119566 2119640 . + . ID=exon-LPH39_RS08705-1;Parent=rna-LPH39_RS08705;anticodon=(pos:2119598..2119600);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08705;product=tRNA-Val NZ_CP087677.1 RefSeq gene 2119671 2119747 . + . ID=gene-LPH39_RS08710;Name=LPH39_RS08710;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS08710;old_locus_tag=LPH39_08710 NZ_CP087677.1 tRNAscan-SE tRNA 2119671 2119747 . + . ID=rna-LPH39_RS08710;Parent=gene-LPH39_RS08710;anticodon=(pos:2119705..2119707);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08710;product=tRNA-Asp NZ_CP087677.1 tRNAscan-SE exon 2119671 2119747 . + . ID=exon-LPH39_RS08710-1;Parent=rna-LPH39_RS08710;anticodon=(pos:2119705..2119707);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS08710;product=tRNA-Asp NZ_CP087677.1 RefSeq gene 2120105 2122072 . + . ID=gene-LPH39_RS08715;Name=LPH39_RS08715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08715;old_locus_tag=LPH39_08715 NZ_CP087677.1 Protein Homology CDS 2120105 2122072 . + 0 ID=cds-WP_038270981.1;Parent=gene-LPH39_RS08715;Dbxref=Genbank:WP_038270981.1;Name=WP_038270981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920425.1;locus_tag=LPH39_RS08715;product=peptidylprolyl isomerase;protein_id=WP_038270981.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2122853 2123887 . + . ID=gene-LPH39_RS08720;Name=LPH39_RS08720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08720;old_locus_tag=LPH39_08720 NZ_CP087677.1 Protein Homology CDS 2122853 2123887 . + 0 ID=cds-WP_038270983.1;Parent=gene-LPH39_RS08720;Dbxref=Genbank:WP_038270983.1;Name=WP_038270983.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086557.1;locus_tag=LPH39_RS08720;product=DUF475 domain-containing protein;protein_id=WP_038270983.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2126594 2129065 . + . ID=gene-LPH39_RS08725;Name=LPH39_RS08725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08725;old_locus_tag=LPH39_08725 NZ_CP087677.1 Protein Homology CDS 2126594 2129065 . + 0 ID=cds-WP_038270984.1;Parent=gene-LPH39_RS08725;Dbxref=Genbank:WP_038270984.1;Name=WP_038270984.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893707.1;locus_tag=LPH39_RS08725;product=ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_038270984.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2129142 2130182 . + . ID=gene-LPH39_RS08730;Name=LPH39_RS08730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08730;old_locus_tag=LPH39_08730 NZ_CP087677.1 Protein Homology CDS 2129142 2130182 . + 0 ID=cds-WP_038270985.1;Parent=gene-LPH39_RS08730;Dbxref=Genbank:WP_038270985.1;Name=WP_038270985.1;Ontology_term=GO:0009263,GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017356462.1;locus_tag=LPH39_RS08730;product=ribonucleotide-diphosphate reductase subunit beta;protein_id=WP_038270985.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2130194 2130676 . + . ID=gene-LPH39_RS08735;Name=LPH39_RS08735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08735;old_locus_tag=LPH39_08735 NZ_CP087677.1 Protein Homology CDS 2130194 2130676 . + 0 ID=cds-WP_038270986.1;Parent=gene-LPH39_RS08735;Dbxref=Genbank:WP_038270986.1;Name=WP_038270986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852453.1;locus_tag=LPH39_RS08735;product=flavodoxin;protein_id=WP_038270986.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2130648 2130974 . + . ID=gene-LPH39_RS08740;Name=LPH39_RS08740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08740;old_locus_tag=LPH39_08740 NZ_CP087677.1 Protein Homology CDS 2130648 2130974 . + 0 ID=cds-WP_038270987.1;Parent=gene-LPH39_RS08740;Dbxref=Genbank:WP_038270987.1;Name=WP_038270987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156291.1;locus_tag=LPH39_RS08740;product=thioredoxin family protein;protein_id=WP_038270987.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2131007 2131192 . - . ID=gene-LPH39_RS08745;Name=LPH39_RS08745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08745;old_locus_tag=LPH39_08745 NZ_CP087677.1 GeneMarkS-2+ CDS 2131007 2131192 . - 0 ID=cds-WP_038270988.1;Parent=gene-LPH39_RS08745;Dbxref=Genbank:WP_038270988.1;Name=WP_038270988.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08745;product=hypothetical protein;protein_id=WP_038270988.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2131721 2131864 . + . ID=gene-LPH39_RS08750;Name=LPH39_RS08750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08750;old_locus_tag=LPH39_08750 NZ_CP087677.1 GeneMarkS-2+ CDS 2131721 2131864 . + 0 ID=cds-WP_230428498.1;Parent=gene-LPH39_RS08750;Dbxref=Genbank:WP_230428498.1;Name=WP_230428498.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08750;product=hypothetical protein;protein_id=WP_230428498.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2131947 2132162 . + . ID=gene-LPH39_RS08755;Name=LPH39_RS08755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08755;old_locus_tag=LPH39_08755 NZ_CP087677.1 GeneMarkS-2+ CDS 2131947 2132162 . + 0 ID=cds-WP_152536602.1;Parent=gene-LPH39_RS08755;Dbxref=Genbank:WP_152536602.1;Name=WP_152536602.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08755;product=hypothetical protein;protein_id=WP_152536602.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2132481 2133191 . + . ID=gene-LPH39_RS08760;Name=LPH39_RS08760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08760;old_locus_tag=LPH39_08760 NZ_CP087677.1 Protein Homology CDS 2132481 2133191 . + 0 ID=cds-WP_038270990.1;Parent=gene-LPH39_RS08760;Dbxref=Genbank:WP_038270990.1;Name=WP_038270990.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852452.1;locus_tag=LPH39_RS08760;product=16S rRNA pseudouridine(516) synthase;protein_id=WP_038270990.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2133188 2133868 . + . ID=gene-LPH39_RS08765;Name=LPH39_RS08765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08765;old_locus_tag=LPH39_08765 NZ_CP087677.1 Protein Homology CDS 2133188 2133868 . + 0 ID=cds-WP_038270991.1;Parent=gene-LPH39_RS08765;Dbxref=Genbank:WP_038270991.1;Name=WP_038270991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893711.1;locus_tag=LPH39_RS08765;product=HAD family phosphatase;protein_id=WP_038270991.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2134721 2135278 . - . ID=gene-LPH39_RS08770;Name=LPH39_RS08770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08770;old_locus_tag=LPH39_08770 NZ_CP087677.1 Protein Homology CDS 2134721 2135278 . - 0 ID=cds-WP_038270993.1;Parent=gene-LPH39_RS08770;Dbxref=Genbank:WP_038270993.1;Name=WP_038270993.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086564.1;locus_tag=LPH39_RS08770;product=DUF1415 domain-containing protein;protein_id=WP_038270993.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2135629 2135787 . + . ID=gene-LPH39_RS08775;Name=LPH39_RS08775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08775;old_locus_tag=LPH39_08775 NZ_CP087677.1 GeneMarkS-2+ CDS 2135629 2135787 . + 0 ID=cds-WP_230428168.1;Parent=gene-LPH39_RS08775;Dbxref=Genbank:WP_230428168.1;Name=WP_230428168.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08775;product=hypothetical protein;protein_id=WP_230428168.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2137037 2137273 . + . ID=gene-LPH39_RS08780;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=LPH39_RS08780;old_locus_tag=LPH39_08780 NZ_CP087677.1 Protein Homology CDS 2137037 2137273 . + 0 ID=cds-WP_038270994.1;Parent=gene-LPH39_RS08780;Dbxref=Genbank:WP_038270994.1;Name=WP_038270994.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rpmB;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019185625.1;locus_tag=LPH39_RS08780;product=50S ribosomal protein L28;protein_id=WP_038270994.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2137284 2137451 . + . ID=gene-LPH39_RS08785;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=LPH39_RS08785;old_locus_tag=LPH39_08785 NZ_CP087677.1 Protein Homology CDS 2137284 2137451 . + 0 ID=cds-WP_171898073.1;Parent=gene-LPH39_RS08785;Dbxref=Genbank:WP_171898073.1;Name=WP_171898073.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmG;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001051801.1;locus_tag=LPH39_RS08785;product=50S ribosomal protein L33;protein_id=WP_171898073.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2137637 2139040 . + . ID=gene-LPH39_RS08790;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=LPH39_RS08790;old_locus_tag=LPH39_08790 NZ_CP087677.1 Protein Homology CDS 2137637 2139040 . + 0 ID=cds-WP_038270996.1;Parent=gene-LPH39_RS08790;Dbxref=Genbank:WP_038270996.1;Name=WP_038270996.1;Ontology_term=GO:0032049,GO:0008808;gbkey=CDS;gene=cls;go_function=cardiolipin synthase activity|0008808||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893717.1;locus_tag=LPH39_RS08790;product=cardiolipin synthase;protein_id=WP_038270996.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2139776 2140795 . - . ID=gene-LPH39_RS08795;Name=LPH39_RS08795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08795;old_locus_tag=LPH39_08795 NZ_CP087677.1 Protein Homology CDS 2139776 2140795 . - 0 ID=cds-WP_038270998.1;Parent=gene-LPH39_RS08795;Dbxref=Genbank:WP_038270998.1;Name=WP_038270998.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852569.1;locus_tag=LPH39_RS08795;product=tyrosine-type recombinase/integrase;protein_id=WP_038270998.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2140795 2141043 . - . ID=gene-LPH39_RS08800;Name=LPH39_RS08800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08800;old_locus_tag=LPH39_08800 NZ_CP087677.1 Protein Homology CDS 2140795 2141043 . - 0 ID=cds-WP_081755423.1;Parent=gene-LPH39_RS08800;Dbxref=Genbank:WP_081755423.1;Name=WP_081755423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852417.1;locus_tag=LPH39_RS08800;product=DUF4224 domain-containing protein;protein_id=WP_081755423.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2141098 2141634 . - . ID=gene-LPH39_RS08805;Name=LPH39_RS08805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08805;old_locus_tag=LPH39_08805 NZ_CP087677.1 Protein Homology CDS 2141098 2141634 . - 0 ID=cds-WP_038273354.1-2;Parent=gene-LPH39_RS08805;Dbxref=Genbank:WP_038273354.1;Name=WP_038273354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337723.1;locus_tag=LPH39_RS08805;product=pilin;protein_id=WP_038273354.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2141631 2143016 . - . ID=gene-LPH39_RS08810;Name=LPH39_RS08810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08810;old_locus_tag=LPH39_08810 NZ_CP087677.1 Protein Homology CDS 2141631 2143016 . - 0 ID=cds-WP_114867068.1-2;Parent=gene-LPH39_RS08810;Dbxref=Genbank:WP_114867068.1;Name=WP_114867068.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085030.1;locus_tag=LPH39_RS08810;product=DEAD/DEAH box helicase;protein_id=WP_114867068.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2143092 2143376 . + . ID=gene-LPH39_RS08815;Name=LPH39_RS08815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08815;old_locus_tag=LPH39_08815 NZ_CP087677.1 Protein Homology CDS 2143092 2143376 . + 0 ID=cds-WP_114867078.1;Parent=gene-LPH39_RS08815;Dbxref=Genbank:WP_114867078.1;Name=WP_114867078.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851619.1;locus_tag=LPH39_RS08815;product=DUF1640 domain-containing protein;protein_id=WP_114867078.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2143378 2143650 . - . ID=gene-LPH39_RS08820;Name=LPH39_RS08820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08820;old_locus_tag=LPH39_08820 NZ_CP087677.1 Protein Homology CDS 2143378 2143650 . - 0 ID=cds-WP_114867070.1-2;Parent=gene-LPH39_RS08820;Dbxref=Genbank:WP_114867070.1;Name=WP_114867070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382732.1;locus_tag=LPH39_RS08820;product=VRR-NUC domain-containing protein;protein_id=WP_114867070.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2143654 2144847 . - . ID=gene-LPH39_RS08825;Name=LPH39_RS08825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08825;old_locus_tag=LPH39_08825 NZ_CP087677.1 GeneMarkS-2+ CDS 2143654 2144847 . - 0 ID=cds-WP_230428169.1;Parent=gene-LPH39_RS08825;Dbxref=Genbank:WP_230428169.1;Name=WP_230428169.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08825;product=hypothetical protein;protein_id=WP_230428169.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2144804 2145502 . + . ID=gene-LPH39_RS08830;Name=LPH39_RS08830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08830;old_locus_tag=LPH39_08830 NZ_CP087677.1 Protein Homology CDS 2144804 2145502 . + 0 ID=cds-WP_114867079.1;Parent=gene-LPH39_RS08830;Dbxref=Genbank:WP_114867079.1;Name=WP_114867079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852371.1;locus_tag=LPH39_RS08830;product=hypothetical protein;protein_id=WP_114867079.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2145563 2145841 . + . ID=gene-LPH39_RS08835;Name=LPH39_RS08835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08835;old_locus_tag=LPH39_08835 NZ_CP087677.1 Protein Homology CDS 2145563 2145841 . + 0 ID=cds-WP_038273333.1;Parent=gene-LPH39_RS08835;Dbxref=Genbank:WP_038273333.1;Name=WP_038273333.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083921.1;locus_tag=LPH39_RS08835;product=BrnT family toxin;protein_id=WP_038273333.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2145807 2146118 . + . ID=gene-LPH39_RS08840;Name=LPH39_RS08840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08840;old_locus_tag=LPH39_08840 NZ_CP087677.1 Protein Homology CDS 2145807 2146118 . + 0 ID=cds-WP_038273331.1;Parent=gene-LPH39_RS08840;Dbxref=Genbank:WP_038273331.1;Name=WP_038273331.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084245.1;locus_tag=LPH39_RS08840;product=BrnA antitoxin family protein;protein_id=WP_038273331.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2146339 2146860 . + . ID=gene-LPH39_RS08845;Name=LPH39_RS08845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08845;old_locus_tag=LPH39_08845 NZ_CP087677.1 Protein Homology CDS 2146339 2146860 . + 0 ID=cds-WP_114867080.1;Parent=gene-LPH39_RS08845;Dbxref=Genbank:WP_114867080.1;Name=WP_114867080.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853008.1;locus_tag=LPH39_RS08845;product=lysozyme;protein_id=WP_114867080.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2146853 2147179 . + . ID=gene-LPH39_RS08850;Name=LPH39_RS08850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08850;old_locus_tag=LPH39_08850 NZ_CP087677.1 Protein Homology CDS 2146853 2147179 . + 0 ID=cds-WP_038272732.1;Parent=gene-LPH39_RS08850;Dbxref=Genbank:WP_038272732.1;Name=WP_038272732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852373.1;locus_tag=LPH39_RS08850;product=phage holin family protein;protein_id=WP_038272732.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2147169 2147630 . + . ID=gene-LPH39_RS08855;Name=LPH39_RS08855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08855;old_locus_tag=LPH39_08855 NZ_CP087677.1 Protein Homology CDS 2147169 2147630 . + 0 ID=cds-WP_038272730.1-2;Parent=gene-LPH39_RS08855;Dbxref=Genbank:WP_038272730.1;Name=WP_038272730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086887.1;locus_tag=LPH39_RS08855;product=hypothetical protein;protein_id=WP_038272730.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2147632 2147847 . + . ID=gene-LPH39_RS08860;Name=LPH39_RS08860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08860;old_locus_tag=LPH39_08860 NZ_CP087677.1 Protein Homology CDS 2147632 2147847 . + 0 ID=cds-WP_038272727.1;Parent=gene-LPH39_RS08860;Dbxref=Genbank:WP_038272727.1;Name=WP_038272727.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085111.1;locus_tag=LPH39_RS08860;product=hypothetical protein;protein_id=WP_038272727.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2147858 2148595 . + . ID=gene-LPH39_RS08865;Name=LPH39_RS08865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08865;old_locus_tag=LPH39_08865 NZ_CP087677.1 Protein Homology CDS 2147858 2148595 . + 0 ID=cds-WP_038272739.1;Parent=gene-LPH39_RS08865;Dbxref=Genbank:WP_038272739.1;Name=WP_038272739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085024.1;locus_tag=LPH39_RS08865;product=site-specific DNA-methyltransferase;protein_id=WP_038272739.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2148595 2148819 . + . ID=gene-LPH39_RS08870;Name=LPH39_RS08870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08870;old_locus_tag=LPH39_08870 NZ_CP087677.1 Protein Homology CDS 2148595 2148819 . + 0 ID=cds-WP_038272724.1;Parent=gene-LPH39_RS08870;Dbxref=Genbank:WP_038272724.1;Name=WP_038272724.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF039194.1;locus_tag=LPH39_RS08870;product=DUF5681 domain-containing protein;protein_id=WP_038272724.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2148828 2149298 . + . ID=gene-LPH39_RS08875;Name=LPH39_RS08875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08875;old_locus_tag=LPH39_08875 NZ_CP087677.1 Protein Homology CDS 2148828 2149298 . + 0 ID=cds-WP_051482379.1;Parent=gene-LPH39_RS08875;Dbxref=Genbank:WP_051482379.1;Name=WP_051482379.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015211.2;locus_tag=LPH39_RS08875;product=terminase family protein;protein_id=WP_051482379.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2149422 2149733 . + . ID=gene-LPH39_RS08880;Name=LPH39_RS08880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08880;old_locus_tag=LPH39_08880 NZ_CP087677.1 GeneMarkS-2+ CDS 2149422 2149733 . + 0 ID=cds-WP_038272721.1;Parent=gene-LPH39_RS08880;Dbxref=Genbank:WP_038272721.1;Name=WP_038272721.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08880;product=hypothetical protein;protein_id=WP_038272721.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2150884 2151501 . + . ID=gene-LPH39_RS08885;Name=LPH39_RS08885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08885;old_locus_tag=LPH39_08885 NZ_CP087677.1 Protein Homology CDS 2150884 2151501 . + 0 ID=cds-WP_038272719.1;Parent=gene-LPH39_RS08885;Dbxref=Genbank:WP_038272719.1;Name=WP_038272719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090201.1;locus_tag=LPH39_RS08885;product=glutathione binding-like protein;protein_id=WP_038272719.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2151674 2152660 . - . ID=gene-LPH39_RS08890;Name=LPH39_RS08890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08890;old_locus_tag=LPH39_08890 NZ_CP087677.1 Protein Homology CDS 2151674 2152660 . - 0 ID=cds-WP_038272716.1;Parent=gene-LPH39_RS08890;Dbxref=Genbank:WP_038272716.1;Name=WP_038272716.1;Ontology_term=GO:0006108,GO:0016615;gbkey=CDS;go_function=malate dehydrogenase activity|0016615||IEA;go_process=malate metabolic process|0006108||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003653591.1;locus_tag=LPH39_RS08890;product=malate dehydrogenase;protein_id=WP_038272716.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2152799 2153293 . - . ID=gene-LPH39_RS08895;Name=LPH39_RS08895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08895;old_locus_tag=LPH39_08895 NZ_CP087677.1 Protein Homology CDS 2152799 2153293 . - 0 ID=cds-WP_038272714.1;Parent=gene-LPH39_RS08895;Dbxref=Genbank:WP_038272714.1;Name=WP_038272714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090205.1;locus_tag=LPH39_RS08895;product=peptidylprolyl isomerase;protein_id=WP_038272714.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2153527 2155356 . + . ID=gene-LPH39_RS08900;Name=typA;gbkey=Gene;gene=typA;gene_biotype=protein_coding;locus_tag=LPH39_RS08900;old_locus_tag=LPH39_08900 NZ_CP087677.1 Protein Homology CDS 2153527 2155356 . + 0 ID=cds-WP_038272712.1;Parent=gene-LPH39_RS08900;Dbxref=Genbank:WP_038272712.1;Name=WP_038272712.1;Ontology_term=GO:0006412,GO:0006950,GO:0005525;gbkey=CDS;gene=typA;go_function=GTP binding|0005525||IEA;go_process=translation|0006412||IEA,response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904579.1;locus_tag=LPH39_RS08900;product=translational GTPase TypA;protein_id=WP_038272712.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2155376 2155861 . + . ID=gene-LPH39_RS08905;Name=LPH39_RS08905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08905;old_locus_tag=LPH39_08905 NZ_CP087677.1 Protein Homology CDS 2155376 2155861 . + 0 ID=cds-WP_038272710.1;Parent=gene-LPH39_RS08905;Dbxref=Genbank:WP_038272710.1;Name=WP_038272710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300716.1;locus_tag=LPH39_RS08905;product=DUF2127 domain-containing protein;protein_id=WP_038272710.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2156160 2156390 . + . ID=gene-LPH39_RS08910;Name=LPH39_RS08910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08910;old_locus_tag=LPH39_08910 NZ_CP087677.1 GeneMarkS-2+ CDS 2156160 2156390 . + 0 ID=cds-WP_152536658.1;Parent=gene-LPH39_RS08910;Dbxref=Genbank:WP_152536658.1;Name=WP_152536658.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08910;product=hypothetical protein;protein_id=WP_152536658.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2156436 2157698 . + . ID=gene-LPH39_RS08915;Name=LPH39_RS08915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08915;old_locus_tag=LPH39_08915 NZ_CP087677.1 Protein Homology CDS 2156436 2157698 . + 0 ID=cds-WP_038272708.1;Parent=gene-LPH39_RS08915;Dbxref=Genbank:WP_038272708.1;Name=WP_038272708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893724.1;locus_tag=LPH39_RS08915;product=HlyD family efflux transporter periplasmic adaptor subunit;protein_id=WP_038272708.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2157917 2158150 . + . ID=gene-LPH39_RS08920;Name=LPH39_RS08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08920;old_locus_tag=LPH39_08920 NZ_CP087677.1 Protein Homology CDS 2157917 2158150 . + 0 ID=cds-WP_230430678.1;Parent=gene-LPH39_RS08920;Dbxref=Genbank:WP_230430678.1;Name=WP_230430678.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090213.1;locus_tag=LPH39_RS08920;product=hypothetical protein;protein_id=WP_230430678.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2158344 2158634 . + . ID=gene-LPH39_RS08925;Name=LPH39_RS08925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08925;old_locus_tag=LPH39_08925 NZ_CP087677.1 Protein Homology CDS 2158344 2158634 . + 0 ID=cds-WP_230428171.1;Parent=gene-LPH39_RS08925;Dbxref=Genbank:WP_230428171.1;Name=WP_230428171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893726.1;locus_tag=LPH39_RS08925;product=hypothetical protein;protein_id=WP_230428171.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2158835 2159098 . + . ID=gene-LPH39_RS08930;Name=LPH39_RS08930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08930;old_locus_tag=LPH39_08930 NZ_CP087677.1 Protein Homology CDS 2158835 2159098 . + 0 ID=cds-WP_081755482.1;Parent=gene-LPH39_RS08930;Dbxref=Genbank:WP_081755482.1;Name=WP_081755482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893727.1;locus_tag=LPH39_RS08930;product=hypothetical protein;protein_id=WP_081755482.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2159310 2159540 . + . ID=gene-LPH39_RS08935;Name=LPH39_RS08935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08935;old_locus_tag=LPH39_08935 NZ_CP087677.1 GeneMarkS-2+ CDS 2159310 2159540 . + 0 ID=cds-WP_152536657.1;Parent=gene-LPH39_RS08935;Dbxref=Genbank:WP_152536657.1;Name=WP_152536657.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08935;product=hypothetical protein;protein_id=WP_152536657.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2159978 2162089 . + . ID=gene-LPH39_RS08940;Name=LPH39_RS08940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08940;old_locus_tag=LPH39_08940 NZ_CP087677.1 Protein Homology CDS 2159978 2162089 . + 0 ID=cds-WP_038272702.1;Parent=gene-LPH39_RS08940;Dbxref=Genbank:WP_038272702.1;Name=WP_038272702.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090222.1;locus_tag=LPH39_RS08940;product=peptidase domain-containing ABC transporter;protein_id=WP_038272702.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2163096 2163875 . - . ID=gene-LPH39_RS08945;Name=LPH39_RS08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08945;old_locus_tag=LPH39_08945 NZ_CP087677.1 Protein Homology CDS 2163096 2163875 . - 0 ID=cds-WP_038272700.1;Parent=gene-LPH39_RS08945;Dbxref=Genbank:WP_038272700.1;Name=WP_038272700.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893730.1;locus_tag=LPH39_RS08945;product=ABC transporter permease;protein_id=WP_038272700.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2163909 2164889 . - . ID=gene-LPH39_RS08950;Name=LPH39_RS08950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08950;old_locus_tag=LPH39_08950 NZ_CP087677.1 Protein Homology CDS 2163909 2164889 . - 0 ID=cds-WP_051482378.1;Parent=gene-LPH39_RS08950;Dbxref=Genbank:WP_051482378.1;Name=WP_051482378.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090226.1;locus_tag=LPH39_RS08950;product=ABC transporter ATP-binding protein;protein_id=WP_051482378.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2165866 2169552 . + . ID=gene-LPH39_RS08955;Name=LPH39_RS08955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08955;old_locus_tag=LPH39_08955 NZ_CP087677.1 Protein Homology CDS 2165866 2169552 . + 0 ID=cds-WP_114867210.1;Parent=gene-LPH39_RS08955;Dbxref=Genbank:WP_114867210.1;Name=WP_114867210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097665.1;locus_tag=LPH39_RS08955;product=pilus assembly protein;protein_id=WP_114867210.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2170203 2170679 . - . ID=gene-LPH39_RS08960;Name=LPH39_RS08960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08960;old_locus_tag=LPH39_08960 NZ_CP087677.1 Protein Homology CDS 2170203 2170679 . - 0 ID=cds-WP_038270586.1;Parent=gene-LPH39_RS08960;Dbxref=Genbank:WP_038270586.1;Name=WP_038270586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337698.1;locus_tag=LPH39_RS08960;product=hypothetical protein;protein_id=WP_038270586.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2172114 2172503 . - . ID=gene-LPH39_RS08965;Name=LPH39_RS08965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08965;old_locus_tag=LPH39_08965 NZ_CP087677.1 Protein Homology CDS 2172114 2172503 . - 0 ID=cds-WP_038270588.1;Parent=gene-LPH39_RS08965;Dbxref=Genbank:WP_038270588.1;Name=WP_038270588.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851560.1;locus_tag=LPH39_RS08965;product=hypothetical protein;protein_id=WP_038270588.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2172762 2175263 . - . ID=gene-LPH39_RS08970;Name=hrpB;gbkey=Gene;gene=hrpB;gene_biotype=protein_coding;locus_tag=LPH39_RS08970;old_locus_tag=LPH39_08970 NZ_CP087677.1 Protein Homology CDS 2172762 2175263 . - 0 ID=cds-WP_038270589.1;Parent=gene-LPH39_RS08970;Dbxref=Genbank:WP_038270589.1;Name=WP_038270589.1;Ontology_term=GO:0006139,GO:0004386;gbkey=CDS;gene=hrpB;go_function=helicase activity|0004386||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851559.1;locus_tag=LPH39_RS08970;product=ATP-dependent helicase HrpB;protein_id=WP_038270589.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2176862 2177059 . - . ID=gene-LPH39_RS08975;Name=LPH39_RS08975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08975;old_locus_tag=LPH39_08975 NZ_CP087677.1 GeneMarkS-2+ CDS 2176862 2177059 . - 0 ID=cds-WP_038270591.1;Parent=gene-LPH39_RS08975;Dbxref=Genbank:WP_038270591.1;Name=WP_038270591.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS08975;product=hypothetical protein;protein_id=WP_038270591.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2177056 2177538 . - . ID=gene-LPH39_RS08980;Name=LPH39_RS08980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08980;old_locus_tag=LPH39_08980 NZ_CP087677.1 Protein Homology CDS 2177056 2177538 . - 0 ID=cds-WP_038270592.1;Parent=gene-LPH39_RS08980;Dbxref=Genbank:WP_038270592.1;Name=WP_038270592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084082.1;locus_tag=LPH39_RS08980;product=GAF domain-containing protein;protein_id=WP_038270592.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2178730 2180511 . + . ID=gene-LPH39_RS08985;Name=LPH39_RS08985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08985;old_locus_tag=LPH39_08985 NZ_CP087677.1 Protein Homology CDS 2178730 2180511 . + 0 ID=cds-WP_051482268.1;Parent=gene-LPH39_RS08985;Dbxref=Genbank:WP_051482268.1;Name=WP_051482268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260618.1;locus_tag=LPH39_RS08985;product=autotransporter assembly complex protein TamA;protein_id=WP_051482268.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2180562 2184344 . + . ID=gene-LPH39_RS08990;Name=LPH39_RS08990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS08990;old_locus_tag=LPH39_08990 NZ_CP087677.1 Protein Homology CDS 2180562 2184344 . + 0 ID=cds-WP_230428275.1;Parent=gene-LPH39_RS08990;Dbxref=Genbank:WP_230428275.1;Name=WP_230428275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087207.1;locus_tag=LPH39_RS08990;product=translocation/assembly module TamB domain-containing protein;protein_id=WP_230428275.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2185419 2186318 . + . ID=gene-LPH39_RS08995;Name=prpB;gbkey=Gene;gene=prpB;gene_biotype=protein_coding;locus_tag=LPH39_RS08995;old_locus_tag=LPH39_08995 NZ_CP087677.1 Protein Homology CDS 2185419 2186318 . + 0 ID=cds-WP_038270595.1;Parent=gene-LPH39_RS08995;Dbxref=Genbank:WP_038270595.1;Name=WP_038270595.1;Ontology_term=GO:0019629,GO:0046421;gbkey=CDS;gene=prpB;go_function=methylisocitrate lyase activity|0046421||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337702.1;locus_tag=LPH39_RS08995;product=methylisocitrate lyase;protein_id=WP_038270595.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2186407 2186748 . - . ID=gene-LPH39_RS09000;Name=LPH39_RS09000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09000;old_locus_tag=LPH39_09000 NZ_CP087677.1 GeneMarkS-2+ CDS 2186407 2186748 . - 0 ID=cds-WP_051482270.1;Parent=gene-LPH39_RS09000;Dbxref=Genbank:WP_051482270.1;Name=WP_051482270.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09000;product=hypothetical protein;protein_id=WP_051482270.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2186660 2187199 . + . ID=gene-LPH39_RS09005;Name=LPH39_RS09005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09005;old_locus_tag=LPH39_09005 NZ_CP087677.1 Protein Homology CDS 2186660 2187199 . + 0 ID=cds-WP_081755406.1;Parent=gene-LPH39_RS09005;Dbxref=Genbank:WP_081755406.1;Name=WP_081755406.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012506.2;locus_tag=LPH39_RS09005;product=hypothetical protein;protein_id=WP_081755406.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2187202 2187327 . + . ID=gene-LPH39_RS12055;Name=LPH39_RS12055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12055 NZ_CP087677.1 GeneMarkS-2+ CDS 2187202 2187327 . + 0 ID=cds-WP_267903173.1;Parent=gene-LPH39_RS12055;Dbxref=Genbank:WP_267903173.1;Name=WP_267903173.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12055;product=hypothetical protein;protein_id=WP_267903173.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2187324 2189948 . + . ID=gene-LPH39_RS09010;Name=acnD;gbkey=Gene;gene=acnD;gene_biotype=protein_coding;locus_tag=LPH39_RS09010;old_locus_tag=LPH39_09010 NZ_CP087677.1 Protein Homology CDS 2187324 2189948 . + 0 ID=cds-WP_038270597.1;Parent=gene-LPH39_RS09010;Dbxref=Genbank:WP_038270597.1;Name=WP_038270597.1;Ontology_term=GO:0019629,GO:0047456;gbkey=CDS;gene=acnD;go_function=2-methylisocitrate dehydratase activity|0047456||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849833.1;locus_tag=LPH39_RS09010;product=Fe/S-dependent 2-methylisocitrate dehydratase AcnD;protein_id=WP_038270597.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2190316 2191512 . + . ID=gene-LPH39_RS09015;Name=prpF;gbkey=Gene;gene=prpF;gene_biotype=protein_coding;locus_tag=LPH39_RS09015;old_locus_tag=LPH39_09015 NZ_CP087677.1 Protein Homology CDS 2190316 2191512 . + 0 ID=cds-WP_038270598.1;Parent=gene-LPH39_RS09015;Dbxref=Genbank:WP_038270598.1;Name=WP_038270598.1;Ontology_term=GO:0019629;gbkey=CDS;gene=prpF;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097671.1;locus_tag=LPH39_RS09015;product=2-methylaconitate cis-trans isomerase PrpF;protein_id=WP_038270598.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2191766 2191894 . + . ID=gene-LPH39_RS12060;Name=LPH39_RS12060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12060 NZ_CP087677.1 GeneMarkS-2+ CDS 2191766 2191894 . + 0 ID=cds-WP_267903174.1;Parent=gene-LPH39_RS12060;Dbxref=Genbank:WP_267903174.1;Name=WP_267903174.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12060;product=hypothetical protein;protein_id=WP_267903174.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2193812 2194708 . - . ID=gene-LPH39_RS09020;Name=LPH39_RS09020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09020;old_locus_tag=LPH39_09020 NZ_CP087677.1 Protein Homology CDS 2193812 2194708 . - 0 ID=cds-WP_230430822.1;Parent=gene-LPH39_RS09020;Dbxref=Genbank:WP_230430822.1;Name=WP_230430822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087380.1;locus_tag=LPH39_RS09020;product=hypothetical protein;protein_id=WP_230430822.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2194746 2194928 . - . ID=gene-LPH39_RS09025;Name=LPH39_RS09025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09025;old_locus_tag=LPH39_09025 NZ_CP087677.1 GeneMarkS-2+ CDS 2194746 2194928 . - 0 ID=cds-WP_152536584.1;Parent=gene-LPH39_RS09025;Dbxref=Genbank:WP_152536584.1;Name=WP_152536584.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09025;product=hypothetical protein;protein_id=WP_152536584.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2195148 2195336 . + . ID=gene-LPH39_RS09030;Name=LPH39_RS09030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09030;old_locus_tag=LPH39_09030 NZ_CP087677.1 GeneMarkS-2+ CDS 2195148 2195336 . + 0 ID=cds-WP_038270600.1;Parent=gene-LPH39_RS09030;Dbxref=Genbank:WP_038270600.1;Name=WP_038270600.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09030;product=hypothetical protein;protein_id=WP_038270600.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2195686 2200611 . + . ID=gene-LPH39_RS09035;Name=LPH39_RS09035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09035;old_locus_tag=LPH39_09035 NZ_CP087677.1 Protein Homology CDS 2195686 2200611 . + 0 ID=cds-WP_038270601.1;Parent=gene-LPH39_RS09035;Dbxref=Genbank:WP_038270601.1;Name=WP_038270601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337707.1;locus_tag=LPH39_RS09035;product=alpha-2-macroglobulin;protein_id=WP_038270601.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2201161 2201427 . - . ID=gene-LPH39_RS09040;Name=LPH39_RS09040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09040;old_locus_tag=LPH39_09040 NZ_CP087677.1 Protein Homology CDS 2201161 2201427 . - 0 ID=cds-WP_038270602.1;Parent=gene-LPH39_RS09040;Dbxref=Genbank:WP_038270602.1;Name=WP_038270602.1;Ontology_term=GO:0006355,GO:0003677,GO:0046872;gbkey=CDS;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: protein motif:HMM:NF014624.2;locus_tag=LPH39_RS09040;product=metal-sensing transcriptional repressor;protein_id=WP_038270602.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2201440 2202240 . - . ID=gene-LPH39_RS09045;Name=LPH39_RS09045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09045;old_locus_tag=LPH39_09045 NZ_CP087677.1 Protein Homology CDS 2201440 2202240 . - 0 ID=cds-WP_038270603.1;Parent=gene-LPH39_RS09045;Dbxref=Genbank:WP_038270603.1;Name=WP_038270603.1;Ontology_term=GO:0035444,GO:0015099;gbkey=CDS;go_function=nickel cation transmembrane transporter activity|0015099||IEA;go_process=nickel cation transmembrane transport|0035444||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010953868.1;locus_tag=LPH39_RS09045;product=nickel/cobalt efflux transporter;protein_id=WP_038270603.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2203242 2204255 . - . ID=gene-LPH39_RS09050;Name=LPH39_RS09050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09050;old_locus_tag=LPH39_09050 NZ_CP087677.1 Protein Homology CDS 2203242 2204255 . - 0 ID=cds-WP_038270604.1;Parent=gene-LPH39_RS09050;Dbxref=Genbank:WP_038270604.1;Name=WP_038270604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087377.1;locus_tag=LPH39_RS09050;product=alpha/beta hydrolase;protein_id=WP_038270604.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2204480 2205349 . + . ID=gene-LPH39_RS09055;Name=LPH39_RS09055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09055;old_locus_tag=LPH39_09055 NZ_CP087677.1 Protein Homology CDS 2204480 2205349 . + 0 ID=cds-WP_038270605.1;Parent=gene-LPH39_RS09055;Dbxref=Genbank:WP_038270605.1;Name=WP_038270605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852361.1;locus_tag=LPH39_RS09055;product=AraC family transcriptional regulator;protein_id=WP_038270605.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2206567 2206728 . - . ID=gene-LPH39_RS09060;Name=LPH39_RS09060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09060;old_locus_tag=LPH39_09060 NZ_CP087677.1 GeneMarkS-2+ CDS 2206567 2206728 . - 0 ID=cds-WP_160165137.1;Parent=gene-LPH39_RS09060;Dbxref=Genbank:WP_160165137.1;Name=WP_160165137.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09060;product=hypothetical protein;protein_id=WP_160165137.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2208392 2208724 . - . ID=gene-LPH39_RS09065;Name=LPH39_RS09065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09065;old_locus_tag=LPH39_09065 NZ_CP087677.1 Protein Homology CDS 2208392 2208724 . - 0 ID=cds-WP_038270606.1;Parent=gene-LPH39_RS09065;Dbxref=Genbank:WP_038270606.1;Name=WP_038270606.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010671321.1;locus_tag=LPH39_RS09065;product=hypothetical protein;protein_id=WP_038270606.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2208721 2209737 . - . ID=gene-LPH39_RS09070;Name=LPH39_RS09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09070;old_locus_tag=LPH39_09070 NZ_CP087677.1 Protein Homology CDS 2208721 2209737 . - 0 ID=cds-WP_038270607.1;Parent=gene-LPH39_RS09070;Dbxref=Genbank:WP_038270607.1;Name=WP_038270607.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_263987317.1;locus_tag=LPH39_RS09070;product=M4 family metallopeptidase;protein_id=WP_038270607.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2210761 2211342 . + . ID=gene-LPH39_RS09075;Name=orn;gbkey=Gene;gene=orn;gene_biotype=protein_coding;locus_tag=LPH39_RS09075;old_locus_tag=LPH39_09075 NZ_CP087677.1 Protein Homology CDS 2210761 2211342 . + 0 ID=cds-WP_038270608.1;Parent=gene-LPH39_RS09075;Dbxref=Genbank:WP_038270608.1;Name=WP_038270608.1;Ontology_term=GO:0000175,GO:0003676;gbkey=CDS;gene=orn;go_function=3'-5'-exoribonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852363.1;locus_tag=LPH39_RS09075;product=oligoribonuclease;protein_id=WP_038270608.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2211516 2212463 . - . ID=gene-LPH39_RS09080;Name=LPH39_RS09080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09080;old_locus_tag=LPH39_09080 NZ_CP087677.1 Protein Homology CDS 2211516 2212463 . - 0 ID=cds-WP_038270610.1;Parent=gene-LPH39_RS09080;Dbxref=Genbank:WP_038270610.1;Name=WP_038270610.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084046.1;locus_tag=LPH39_RS09080;product=mechanosensitive ion channel family protein;protein_id=WP_038270610.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2212463 2214838 . - . ID=gene-LPH39_RS09085;Name=ppsA;gbkey=Gene;gene=ppsA;gene_biotype=protein_coding;locus_tag=LPH39_RS09085;old_locus_tag=LPH39_09085 NZ_CP087677.1 Protein Homology CDS 2212463 2214838 . - 0 ID=cds-WP_038270703.1;Parent=gene-LPH39_RS09085;Dbxref=Genbank:WP_038270703.1;Name=WP_038270703.1;Ontology_term=GO:0006090,GO:0016310,GO:0005524,GO:0008986,GO:0016772;gbkey=CDS;gene=ppsA;go_function=ATP binding|0005524||IEA,pyruvate%2C water dikinase activity|0008986||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=pyruvate metabolic process|0006090||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097678.1;locus_tag=LPH39_RS09085;product=phosphoenolpyruvate synthase;protein_id=WP_038270703.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2214986 2215807 . + . ID=gene-LPH39_RS09090;Name=LPH39_RS09090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09090;old_locus_tag=LPH39_09090 NZ_CP087677.1 Protein Homology CDS 2214986 2215807 . + 0 ID=cds-WP_038270611.1;Parent=gene-LPH39_RS09090;Dbxref=Genbank:WP_038270611.1;Name=WP_038270611.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037311.1;locus_tag=LPH39_RS09090;product=kinase/pyrophosphorylase;protein_id=WP_038270611.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2215919 2216392 . + . ID=gene-LPH39_RS09095;Name=LPH39_RS09095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09095;old_locus_tag=LPH39_09095 NZ_CP087677.1 Protein Homology CDS 2215919 2216392 . + 0 ID=cds-WP_038270612.1;Parent=gene-LPH39_RS09095;Dbxref=Genbank:WP_038270612.1;Name=WP_038270612.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010342959.1;locus_tag=LPH39_RS09095;product=DUF1249 domain-containing protein;protein_id=WP_038270612.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2216460 2216948 . + . ID=gene-LPH39_RS09100;Name=LPH39_RS09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09100;old_locus_tag=LPH39_09100 NZ_CP087677.1 Protein Homology CDS 2216460 2216948 . + 0 ID=cds-WP_038270613.1;Parent=gene-LPH39_RS09100;Dbxref=Genbank:WP_038270613.1;Name=WP_038270613.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012511421.1;locus_tag=LPH39_RS09100;product=8-oxo-dGTP diphosphatase;protein_id=WP_038270613.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2217561 2219741 . - . ID=gene-LPH39_RS09105;Name=LPH39_RS09105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09105;old_locus_tag=LPH39_09105 NZ_CP087677.1 Protein Homology CDS 2217561 2219741 . - 0 ID=cds-WP_038270614.1;Parent=gene-LPH39_RS09105;Dbxref=Genbank:WP_038270614.1;Name=WP_038270614.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337710.1;locus_tag=LPH39_RS09105;product=autotransporter domain-containing protein;protein_id=WP_038270614.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2221778 2223088 . - . ID=gene-LPH39_RS09110;Name=LPH39_RS09110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09110;old_locus_tag=LPH39_09110 NZ_CP087677.1 Protein Homology CDS 2221778 2223088 . - 0 ID=cds-WP_038270615.1;Parent=gene-LPH39_RS09110;Dbxref=Genbank:WP_038270615.1;Name=WP_038270615.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893784.1;locus_tag=LPH39_RS09110;product=DUF445 domain-containing protein;protein_id=WP_038270615.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2224571 2225065 . - . ID=gene-LPH39_RS09115;Name=LPH39_RS09115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09115;old_locus_tag=LPH39_09115 NZ_CP087677.1 Protein Homology CDS 2224571 2225065 . - 0 ID=cds-WP_038270618.1;Parent=gene-LPH39_RS09115;Dbxref=Genbank:WP_038270618.1;Name=WP_038270618.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852801.1;locus_tag=LPH39_RS09115;product=phasin family protein;protein_id=WP_038270618.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2225581 2226381 . + . ID=gene-LPH39_RS09120;Name=LPH39_RS09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09120;old_locus_tag=LPH39_09120 NZ_CP087677.1 Protein Homology CDS 2225581 2226381 . + 0 ID=cds-WP_038270619.1;Parent=gene-LPH39_RS09120;Dbxref=Genbank:WP_038270619.1;Name=WP_038270619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904651.1;locus_tag=LPH39_RS09120;product=FHA domain-containing protein;protein_id=WP_038270619.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2227091 2227369 . + . ID=gene-LPH39_RS09125;Name=LPH39_RS09125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09125;old_locus_tag=LPH39_09125 NZ_CP087677.1 Protein Homology CDS 2227091 2227369 . + 0 ID=cds-WP_038270621.1;Parent=gene-LPH39_RS09125;Dbxref=Genbank:WP_038270621.1;Name=WP_038270621.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852798.1;locus_tag=LPH39_RS09125;product=DUF493 family protein;protein_id=WP_038270621.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2227423 2228058 . + . ID=gene-LPH39_RS09130;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;locus_tag=LPH39_RS09130;old_locus_tag=LPH39_09130 NZ_CP087677.1 Protein Homology CDS 2227423 2228058 . + 0 ID=cds-WP_230428276.1;Parent=gene-LPH39_RS09130;Dbxref=Genbank:WP_230428276.1;Name=WP_230428276.1;Ontology_term=GO:0009249,GO:0033819;gbkey=CDS;gene=lipB;go_function=lipoyl(octanoyl) transferase activity|0033819||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084036.1;locus_tag=LPH39_RS09130;product=lipoyl(octanoyl) transferase LipB;protein_id=WP_230428276.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2228075 2229085 . + . ID=gene-LPH39_RS09135;Name=lipA;gbkey=Gene;gene=lipA;gene_biotype=protein_coding;locus_tag=LPH39_RS09135;old_locus_tag=LPH39_09135 NZ_CP087677.1 Protein Homology CDS 2228075 2229085 . + 0 ID=cds-WP_038270623.1;Parent=gene-LPH39_RS09135;Dbxref=Genbank:WP_038270623.1;Name=WP_038270623.1;Ontology_term=GO:0009107,GO:0016992,GO:0051539,GO:1904047;gbkey=CDS;gene=lipA;go_function=lipoate synthase activity|0016992||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=lipoate biosynthetic process|0009107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090539.1;locus_tag=LPH39_RS09135;product=lipoyl synthase;protein_id=WP_038270623.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2229633 2229815 . + . ID=gene-LPH39_RS09140;Name=LPH39_RS09140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09140;old_locus_tag=LPH39_09140 NZ_CP087677.1 GeneMarkS-2+ CDS 2229633 2229815 . + 0 ID=cds-WP_038270624.1;Parent=gene-LPH39_RS09140;Dbxref=Genbank:WP_038270624.1;Name=WP_038270624.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09140;product=hypothetical protein;protein_id=WP_038270624.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2230378 2230866 . + . ID=gene-LPH39_RS09145;Name=LPH39_RS09145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09145;old_locus_tag=LPH39_09145 NZ_CP087677.1 GeneMarkS-2+ CDS 2230378 2230866 . + 0 ID=cds-WP_051482272.1;Parent=gene-LPH39_RS09145;Dbxref=Genbank:WP_051482272.1;Name=WP_051482272.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09145;product=hypothetical protein;protein_id=WP_051482272.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2231245 2231403 . + . ID=gene-LPH39_RS09150;Name=LPH39_RS09150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09150;old_locus_tag=LPH39_09150 NZ_CP087677.1 GeneMarkS-2+ CDS 2231245 2231403 . + 0 ID=cds-WP_160165139.1;Parent=gene-LPH39_RS09150;Dbxref=Genbank:WP_160165139.1;Name=WP_160165139.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09150;product=hypothetical protein;protein_id=WP_160165139.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2231817 2232275 . + . ID=gene-LPH39_RS09155;Name=LPH39_RS09155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09155;old_locus_tag=LPH39_09155 NZ_CP087677.1 GeneMarkS-2+ CDS 2231817 2232275 . + 0 ID=cds-WP_200866182.1;Parent=gene-LPH39_RS09155;Dbxref=Genbank:WP_200866182.1;Name=WP_200866182.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09155;product=hypothetical protein;protein_id=WP_200866182.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2232272 2232604 . + . ID=gene-LPH39_RS09160;Name=LPH39_RS09160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09160;old_locus_tag=LPH39_09160 NZ_CP087677.1 GeneMarkS-2+ CDS 2232272 2232604 . + 0 ID=cds-WP_200866183.1;Parent=gene-LPH39_RS09160;Dbxref=Genbank:WP_200866183.1;Name=WP_200866183.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09160;product=hypothetical protein;protein_id=WP_200866183.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2232908 2234221 . - . ID=gene-LPH39_RS09165;Name=LPH39_RS09165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09165;old_locus_tag=LPH39_09165 NZ_CP087677.1 Protein Homology CDS 2232908 2234221 . - 0 ID=cds-WP_038270626.1;Parent=gene-LPH39_RS09165;Dbxref=Genbank:WP_038270626.1;Name=WP_038270626.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051102.1;locus_tag=LPH39_RS09165;product=hemolysin family protein;protein_id=WP_038270626.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2234904 2236415 . - . ID=gene-LPH39_RS09170;Name=LPH39_RS09170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09170;old_locus_tag=LPH39_09170 NZ_CP087677.1 Protein Homology CDS 2234904 2236415 . - 0 ID=cds-WP_038270627.1;Parent=gene-LPH39_RS09170;Dbxref=Genbank:WP_038270627.1;Name=WP_038270627.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893788.1;locus_tag=LPH39_RS09170;product=S10 family peptidase;protein_id=WP_038270627.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2236443 2236613 . + . ID=gene-LPH39_RS09175;Name=LPH39_RS09175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09175;old_locus_tag=LPH39_09175 NZ_CP087677.1 GeneMarkS-2+ CDS 2236443 2236613 . + 0 ID=cds-WP_160165140.1;Parent=gene-LPH39_RS09175;Dbxref=Genbank:WP_160165140.1;Name=WP_160165140.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09175;product=hypothetical protein;protein_id=WP_160165140.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2237567 2239456 . - . ID=gene-LPH39_RS09180;Name=parE;gbkey=Gene;gene=parE;gene_biotype=protein_coding;locus_tag=LPH39_RS09180;old_locus_tag=LPH39_09180 NZ_CP087677.1 Protein Homology CDS 2237567 2239456 . - 0 ID=cds-WP_038270628.1;Parent=gene-LPH39_RS09180;Dbxref=Genbank:WP_038270628.1;Name=WP_038270628.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parE;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237730.1;locus_tag=LPH39_RS09180;product=DNA topoisomerase IV subunit B;protein_id=WP_038270628.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2239631 2239933 . + . ID=gene-LPH39_RS09185;Name=LPH39_RS09185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09185;old_locus_tag=LPH39_09185 NZ_CP087677.1 GeneMarkS-2+ CDS 2239631 2239933 . + 0 ID=cds-WP_230428173.1;Parent=gene-LPH39_RS09185;Dbxref=Genbank:WP_230428173.1;Name=WP_230428173.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09185;product=hypothetical protein;protein_id=WP_230428173.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2240082 2241746 . + . ID=gene-LPH39_RS09190;Name=LPH39_RS09190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09190;old_locus_tag=LPH39_09190 NZ_CP087677.1 Protein Homology CDS 2240082 2241746 . + 0 ID=cds-WP_038270629.1;Parent=gene-LPH39_RS09190;Dbxref=Genbank:WP_038270629.1;Name=WP_038270629.1;Ontology_term=GO:0006221,GO:0006241,GO:0003883;gbkey=CDS;go_function=CTP synthase activity|0003883||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,CTP biosynthetic process|0006241||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851538.1;locus_tag=LPH39_RS09190;product=CTP synthase;protein_id=WP_038270629.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2241888 2242718 . + . ID=gene-LPH39_RS09195;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=LPH39_RS09195;old_locus_tag=LPH39_09195 NZ_CP087677.1 Protein Homology CDS 2241888 2242718 . + 0 ID=cds-WP_038270707.1;Parent=gene-LPH39_RS09195;Dbxref=Genbank:WP_038270707.1;Name=WP_038270707.1;Ontology_term=GO:0009058,GO:0008676;gbkey=CDS;gene=kdsA;go_function=3-deoxy-8-phosphooctulonate synthase activity|0008676||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893795.1;locus_tag=LPH39_RS09195;product=3-deoxy-8-phosphooctulonate synthase;protein_id=WP_038270707.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2243351 2244643 . + . ID=gene-LPH39_RS09200;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=LPH39_RS09200;old_locus_tag=LPH39_09200 NZ_CP087677.1 Protein Homology CDS 2243351 2244643 . + 0 ID=cds-WP_038270631.1;Parent=gene-LPH39_RS09200;Dbxref=Genbank:WP_038270631.1;Name=WP_038270631.1;Ontology_term=GO:0006096,GO:0004634;gbkey=CDS;gene=eno;go_function=phosphopyruvate hydratase activity|0004634||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808113.1;locus_tag=LPH39_RS09200;product=phosphopyruvate hydratase;protein_id=WP_038270631.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2244647 2245003 . + . ID=gene-LPH39_RS09205;Name=ftsB;gbkey=Gene;gene=ftsB;gene_biotype=protein_coding;locus_tag=LPH39_RS09205;old_locus_tag=LPH39_09205 NZ_CP087677.1 Protein Homology CDS 2244647 2245003 . + 0 ID=cds-WP_038270632.1;Parent=gene-LPH39_RS09205;Dbxref=Genbank:WP_038270632.1;Name=WP_038270632.1;gbkey=CDS;gene=ftsB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097688.1;locus_tag=LPH39_RS09205;product=cell division protein FtsB;protein_id=WP_038270632.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2245000 2245695 . + . ID=gene-LPH39_RS09210;Name=ispD;gbkey=Gene;gene=ispD;gene_biotype=protein_coding;locus_tag=LPH39_RS09210;old_locus_tag=LPH39_09210 NZ_CP087677.1 Protein Homology CDS 2245000 2245695 . + 0 ID=cds-WP_038270634.1;Parent=gene-LPH39_RS09210;Dbxref=Genbank:WP_038270634.1;Name=WP_038270634.1;Ontology_term=GO:0019288,GO:0050518;gbkey=CDS;gene=ispD;go_function=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity|0050518||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893799.1;locus_tag=LPH39_RS09210;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=WP_038270634.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2245723 2246226 . + . ID=gene-LPH39_RS09215;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=LPH39_RS09215;old_locus_tag=LPH39_09215 NZ_CP087677.1 Protein Homology CDS 2245723 2246226 . + 0 ID=cds-WP_038270708.1;Parent=gene-LPH39_RS09215;Dbxref=Genbank:WP_038270708.1;Name=WP_038270708.1;Ontology_term=GO:0019288,GO:0008685;gbkey=CDS;gene=ispF;go_function=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase activity|0008685||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090564.1;locus_tag=LPH39_RS09215;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=WP_038270708.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2246447 2246989 . - . ID=gene-LPH39_RS09220;Name=LPH39_RS09220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09220;old_locus_tag=LPH39_09220 NZ_CP087677.1 Protein Homology CDS 2246447 2246989 . - 0 ID=cds-WP_038270636.1;Parent=gene-LPH39_RS09220;Dbxref=Genbank:WP_038270636.1;Name=WP_038270636.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237727.1;locus_tag=LPH39_RS09220;product=Smr/MutS family protein;protein_id=WP_038270636.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2247622 2248644 . - . ID=gene-LPH39_RS09225;Name=LPH39_RS09225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09225;old_locus_tag=LPH39_09225 NZ_CP087677.1 Protein Homology CDS 2247622 2248644 . - 0 ID=cds-WP_038270637.1;Parent=gene-LPH39_RS09225;Dbxref=Genbank:WP_038270637.1;Name=WP_038270637.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090566.1;locus_tag=LPH39_RS09225;product=SMP-30/gluconolactonase/LRE family protein;protein_id=WP_038270637.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2249245 2250891 . - . ID=gene-LPH39_RS09230;Name=LPH39_RS09230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09230;old_locus_tag=LPH39_09230 NZ_CP087677.1 Protein Homology CDS 2249245 2250891 . - 0 ID=cds-WP_038270639.1;Parent=gene-LPH39_RS09230;Dbxref=Genbank:WP_038270639.1;Name=WP_038270639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083995.1;locus_tag=LPH39_RS09230;product=electron transfer flavoprotein-ubiquinone oxidoreductase;protein_id=WP_038270639.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2250998 2251582 . + . ID=gene-LPH39_RS09235;Name=LPH39_RS09235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09235;old_locus_tag=LPH39_09235 NZ_CP087677.1 Protein Homology CDS 2250998 2251582 . + 0 ID=cds-WP_038270710.1;Parent=gene-LPH39_RS09235;Dbxref=Genbank:WP_038270710.1;Name=WP_038270710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851530.1;locus_tag=LPH39_RS09235;product=alpha-ketoglutarate-dependent dioxygenase AlkB;protein_id=WP_038270710.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2251795 2252436 . - . ID=gene-LPH39_RS09240;Name=LPH39_RS09240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09240;old_locus_tag=LPH39_09240 NZ_CP087677.1 Protein Homology CDS 2251795 2252436 . - 0 ID=cds-WP_038270640.1;Parent=gene-LPH39_RS09240;Dbxref=Genbank:WP_038270640.1;Name=WP_038270640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035875.1;locus_tag=LPH39_RS09240;product=ABC-type transport auxiliary lipoprotein family protein;protein_id=WP_038270640.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2252433 2253359 . - . ID=gene-LPH39_RS09245;Name=LPH39_RS09245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09245;old_locus_tag=LPH39_09245 NZ_CP087677.1 Protein Homology CDS 2252433 2253359 . - 0 ID=cds-WP_038270642.1;Parent=gene-LPH39_RS09245;Dbxref=Genbank:WP_038270642.1;Name=WP_038270642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903957.1;locus_tag=LPH39_RS09245;product=MlaD family protein;protein_id=WP_038270642.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2253363 2254202 . - . ID=gene-LPH39_RS09250;Name=LPH39_RS09250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09250;old_locus_tag=LPH39_09250 NZ_CP087677.1 Protein Homology CDS 2253363 2254202 . - 0 ID=cds-WP_038270643.1;Parent=gene-LPH39_RS09250;Dbxref=Genbank:WP_038270643.1;Name=WP_038270643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090576.1;locus_tag=LPH39_RS09250;product=ABC transporter ATP-binding protein;protein_id=WP_038270643.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2254207 2255325 . - . ID=gene-LPH39_RS09255;Name=LPH39_RS09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09255;old_locus_tag=LPH39_09255 NZ_CP087677.1 Protein Homology CDS 2254207 2255325 . - 0 ID=cds-WP_038270644.1;Parent=gene-LPH39_RS09255;Dbxref=Genbank:WP_038270644.1;Name=WP_038270644.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090577.1;locus_tag=LPH39_RS09255;product=ABC transporter permease;protein_id=WP_038270644.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2255462 2256721 . + . ID=gene-LPH39_RS09260;Name=LPH39_RS09260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09260;old_locus_tag=LPH39_09260 NZ_CP087677.1 Protein Homology CDS 2255462 2256721 . + 0 ID=cds-WP_038270645.1;Parent=gene-LPH39_RS09260;Dbxref=Genbank:WP_038270645.1;Name=WP_038270645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090578.1;locus_tag=LPH39_RS09260;product=threonine/serine exporter family protein;protein_id=WP_038270645.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2257053 2257226 . + . ID=gene-LPH39_RS09265;Name=LPH39_RS09265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09265;old_locus_tag=LPH39_09265 NZ_CP087677.1 Protein Homology CDS 2257053 2257226 . + 0 ID=cds-WP_171898045.1;Parent=gene-LPH39_RS09265;Dbxref=Genbank:WP_171898045.1;Name=WP_171898045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090579.1;locus_tag=LPH39_RS09265;product=hypothetical protein;protein_id=WP_171898045.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2257283 2257450 . + . ID=gene-LPH39_RS09270;Name=LPH39_RS09270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09270;old_locus_tag=LPH39_09270 NZ_CP087677.1 GeneMarkS-2+ CDS 2257283 2257450 . + 0 ID=cds-WP_160165141.1;Parent=gene-LPH39_RS09270;Dbxref=Genbank:WP_160165141.1;Name=WP_160165141.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09270;product=hypothetical protein;protein_id=WP_160165141.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2257505 2257657 . + . ID=gene-LPH39_RS09275;Name=LPH39_RS09275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09275;old_locus_tag=LPH39_09275 NZ_CP087677.1 GeneMarkS-2+ CDS 2257505 2257657 . + 0 ID=cds-WP_162814086.1;Parent=gene-LPH39_RS09275;Dbxref=Genbank:WP_162814086.1;Name=WP_162814086.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09275;product=hypothetical protein;protein_id=WP_162814086.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2257713 2257934 . + . ID=gene-LPH39_RS09280;Name=LPH39_RS09280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09280;old_locus_tag=LPH39_09280 NZ_CP087677.1 GeneMarkS-2+ CDS 2257713 2257934 . + 0 ID=cds-WP_152536585.1;Parent=gene-LPH39_RS09280;Dbxref=Genbank:WP_152536585.1;Name=WP_152536585.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09280;product=hypothetical protein;protein_id=WP_152536585.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2257998 2258207 . + . ID=gene-LPH39_RS09285;Name=LPH39_RS09285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09285;old_locus_tag=LPH39_09285 NZ_CP087677.1 GeneMarkS-2+ CDS 2257998 2258207 . + 0 ID=cds-WP_152536586.1;Parent=gene-LPH39_RS09285;Dbxref=Genbank:WP_152536586.1;Name=WP_152536586.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09285;product=hypothetical protein;protein_id=WP_152536586.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2258259 2258501 . + . ID=gene-LPH39_RS09290;Name=LPH39_RS09290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09290;old_locus_tag=LPH39_09290 NZ_CP087677.1 GeneMarkS-2+ CDS 2258259 2258501 . + 0 ID=cds-WP_038270646.1;Parent=gene-LPH39_RS09290;Dbxref=Genbank:WP_038270646.1;Name=WP_038270646.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09290;product=hypothetical protein;protein_id=WP_038270646.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2259205 2259456 . + . ID=gene-LPH39_RS09295;Name=LPH39_RS09295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09295;old_locus_tag=LPH39_09295 NZ_CP087677.1 Protein Homology CDS 2259205 2259456 . + 0 ID=cds-WP_069636202.1;Parent=gene-LPH39_RS09295;Dbxref=Genbank:WP_069636202.1;Name=WP_069636202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337732.1;locus_tag=LPH39_RS09295;product=hypothetical protein;protein_id=WP_069636202.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2259469 2259711 . + . ID=gene-LPH39_RS09300;Name=LPH39_RS09300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09300;old_locus_tag=LPH39_09300 NZ_CP087677.1 Protein Homology CDS 2259469 2259711 . + 0 ID=cds-WP_038270712.1;Parent=gene-LPH39_RS09300;Dbxref=Genbank:WP_038270712.1;Name=WP_038270712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090583.1;locus_tag=LPH39_RS09300;product=hypothetical protein;protein_id=WP_038270712.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2259766 2260062 . + . ID=gene-LPH39_RS09305;Name=LPH39_RS09305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09305;old_locus_tag=LPH39_09305 NZ_CP087677.1 Protein Homology CDS 2259766 2260062 . + 0 ID=cds-WP_038270714.1;Parent=gene-LPH39_RS09305;Dbxref=Genbank:WP_038270714.1;Name=WP_038270714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084250.1;locus_tag=LPH39_RS09305;product=hypothetical protein;protein_id=WP_038270714.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2260141 2260410 . + . ID=gene-LPH39_RS09310;Name=LPH39_RS09310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09310;old_locus_tag=LPH39_09310 NZ_CP087677.1 Protein Homology CDS 2260141 2260410 . + 0 ID=cds-WP_038270647.1;Parent=gene-LPH39_RS09310;Dbxref=Genbank:WP_038270647.1;Name=WP_038270647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098067.1;locus_tag=LPH39_RS09310;product=hypothetical protein;protein_id=WP_038270647.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2261623 2262666 . + . ID=gene-LPH39_RS09315;Name=LPH39_RS09315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09315;old_locus_tag=LPH39_09315 NZ_CP087677.1 Protein Homology CDS 2261623 2262666 . + 0 ID=cds-WP_038270648.1;Parent=gene-LPH39_RS09315;Dbxref=Genbank:WP_038270648.1;Name=WP_038270648.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083920.1;locus_tag=LPH39_RS09315;product=rod shape-determining protein;protein_id=WP_038270648.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2262862 2263692 . + . ID=gene-LPH39_RS09320;Name=mreC;end_range=2263692,.;gbkey=Gene;gene=mreC;gene_biotype=pseudogene;locus_tag=LPH39_RS09320;old_locus_tag=LPH39_09320;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 2262862 2263692 . + 0 ID=cds-LPH39_RS09320;Parent=gene-LPH39_RS09320;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0008360;end_range=2263692,.;gbkey=CDS;gene=mreC;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089324.1;locus_tag=LPH39_RS09320;partial=true;product=rod shape-determining protein MreC;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2263824 2264309 . + . ID=gene-LPH39_RS09325;Name=mreD;gbkey=Gene;gene=mreD;gene_biotype=protein_coding;locus_tag=LPH39_RS09325;old_locus_tag=LPH39_09325 NZ_CP087677.1 Protein Homology CDS 2263824 2264309 . + 0 ID=cds-WP_038270649.1;Parent=gene-LPH39_RS09325;Dbxref=Genbank:WP_038270649.1;Name=WP_038270649.1;Ontology_term=GO:0008360,GO:0003674;gbkey=CDS;gene=mreD;go_function=molecular_function|0003674||IEA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911183.1;locus_tag=LPH39_RS09325;product=rod shape-determining protein MreD;protein_id=WP_038270649.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2264314 2266377 . + . ID=gene-LPH39_RS09330;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=LPH39_RS09330;old_locus_tag=LPH39_09330 NZ_CP087677.1 Protein Homology CDS 2264314 2266377 . + 0 ID=cds-WP_038270715.1;Parent=gene-LPH39_RS09330;Dbxref=Genbank:WP_038270715.1;Name=WP_038270715.1;Ontology_term=GO:0009252,GO:0003824;gbkey=CDS;gene=mrdA;go_function=catalytic activity|0003824||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851765.1;locus_tag=LPH39_RS09330;product=penicillin-binding protein 2;protein_id=WP_038270715.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2266374 2267495 . + . ID=gene-LPH39_RS09335;Name=rodA;gbkey=Gene;gene=rodA;gene_biotype=protein_coding;locus_tag=LPH39_RS09335;old_locus_tag=LPH39_09335 NZ_CP087677.1 Protein Homology CDS 2266374 2267495 . + 0 ID=cds-WP_038270650.1;Parent=gene-LPH39_RS09335;Dbxref=Genbank:WP_038270650.1;Name=WP_038270650.1;Ontology_term=GO:0008360;gbkey=CDS;gene=rodA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159496.1;locus_tag=LPH39_RS09335;product=rod shape-determining protein RodA;protein_id=WP_038270650.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2267596 2268636 . + . ID=gene-LPH39_RS09340;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=LPH39_RS09340;old_locus_tag=LPH39_09340 NZ_CP087677.1 Protein Homology CDS 2267596 2268636 . + 0 ID=cds-WP_038270651.1;Parent=gene-LPH39_RS09340;Dbxref=Genbank:WP_038270651.1;Name=WP_038270651.1;Ontology_term=GO:0016740,GO:0016853;gbkey=CDS;gene=queA;go_function=transferase activity|0016740||IEA,isomerase activity|0016853||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851767.1;locus_tag=LPH39_RS09340;product=tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA;protein_id=WP_038270651.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2269767 2271890 . + . ID=gene-LPH39_RS09345;Name=LPH39_RS09345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09345;old_locus_tag=LPH39_09345 NZ_CP087677.1 Protein Homology CDS 2269767 2271890 . + 0 ID=cds-WP_171898046.1;Parent=gene-LPH39_RS09345;Dbxref=Genbank:WP_171898046.1;Name=WP_171898046.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852820.1;locus_tag=LPH39_RS09345;product=bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=WP_171898046.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2271995 2273506 . + . ID=gene-LPH39_RS09350;Name=LPH39_RS09350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09350;old_locus_tag=LPH39_09350 NZ_CP087677.1 Protein Homology CDS 2271995 2273506 . + 0 ID=cds-WP_038270654.1;Parent=gene-LPH39_RS09350;Dbxref=Genbank:WP_038270654.1;Name=WP_038270654.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851769.1;locus_tag=LPH39_RS09350;product=hypothetical protein;protein_id=WP_038270654.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2273958 2274461 . - . ID=gene-LPH39_RS09355;Name=LPH39_RS09355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09355;old_locus_tag=LPH39_09355 NZ_CP087677.1 Protein Homology CDS 2273958 2274461 . - 0 ID=cds-WP_038270655.1;Parent=gene-LPH39_RS09355;Dbxref=Genbank:WP_038270655.1;Name=WP_038270655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851771.1;locus_tag=LPH39_RS09355;product=hypothetical protein;protein_id=WP_038270655.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2274522 2274779 . - . ID=gene-LPH39_RS09360;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=LPH39_RS09360;old_locus_tag=LPH39_09360 NZ_CP087677.1 Protein Homology CDS 2274522 2274779 . - 0 ID=cds-WP_038270656.1;Parent=gene-LPH39_RS09360;Dbxref=Genbank:WP_038270656.1;Name=WP_038270656.1;Ontology_term=GO:0032955;gbkey=CDS;gene=minE;go_process=regulation of division septum assembly|0032955||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036323.1;locus_tag=LPH39_RS09360;product=cell division topological specificity factor MinE;protein_id=WP_038270656.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2274782 2275591 . - . ID=gene-LPH39_RS09365;Name=minD;gbkey=Gene;gene=minD;gene_biotype=protein_coding;locus_tag=LPH39_RS09365;old_locus_tag=LPH39_09365 NZ_CP087677.1 Protein Homology CDS 2274782 2275591 . - 0 ID=cds-WP_038270657.1;Parent=gene-LPH39_RS09365;Dbxref=Genbank:WP_038270657.1;Name=WP_038270657.1;Ontology_term=GO:0000918,GO:0016887;gbkey=CDS;gene=minD;go_function=ATP hydrolysis activity|0016887||IEA;go_process=division septum site selection|0000918||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006424120.1;locus_tag=LPH39_RS09365;product=septum site-determining protein MinD;protein_id=WP_038270657.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2275628 2276356 . - . ID=gene-LPH39_RS09370;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=LPH39_RS09370;old_locus_tag=LPH39_09370 NZ_CP087677.1 Protein Homology CDS 2275628 2276356 . - 0 ID=cds-WP_038270658.1;Parent=gene-LPH39_RS09370;Dbxref=Genbank:WP_038270658.1;Name=WP_038270658.1;Ontology_term=GO:0000918,GO:0004857;gbkey=CDS;gene=minC;go_function=enzyme inhibitor activity|0004857||IEA;go_process=division septum site selection|0000918||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007973818.1;locus_tag=LPH39_RS09370;product=septum site-determining protein MinC;protein_id=WP_038270658.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2276371 2276949 . - . ID=gene-LPH39_RS09375;Name=LPH39_RS09375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09375;old_locus_tag=LPH39_09375 NZ_CP087677.1 Protein Homology CDS 2276371 2276949 . - 0 ID=cds-WP_038270659.1;Parent=gene-LPH39_RS09375;Dbxref=Genbank:WP_038270659.1;Name=WP_038270659.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090598.1;locus_tag=LPH39_RS09375;product=GNAT family N-acetyltransferase;protein_id=WP_038270659.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2277019 2277168 . - . ID=gene-LPH39_RS09380;Name=LPH39_RS09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09380;old_locus_tag=LPH39_09380 NZ_CP087677.1 GeneMarkS-2+ CDS 2277019 2277168 . - 0 ID=cds-WP_160165143.1;Parent=gene-LPH39_RS09380;Dbxref=Genbank:WP_160165143.1;Name=WP_160165143.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09380;product=hypothetical protein;protein_id=WP_160165143.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2277865 2279037 . + . ID=gene-LPH39_RS09385;Name=LPH39_RS09385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09385;old_locus_tag=LPH39_09385 NZ_CP087677.1 Protein Homology CDS 2277865 2279037 . + 0 ID=cds-WP_038270660.1;Parent=gene-LPH39_RS09385;Dbxref=Genbank:WP_038270660.1;Name=WP_038270660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851774.1;locus_tag=LPH39_RS09385;product=SRPBCC family protein;protein_id=WP_038270660.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2279342 2280013 . + . ID=gene-LPH39_RS09390;Name=LPH39_RS09390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09390;old_locus_tag=LPH39_09390 NZ_CP087677.1 Protein Homology CDS 2279342 2280013 . + 0 ID=cds-WP_038270661.1;Parent=gene-LPH39_RS09390;Dbxref=Genbank:WP_038270661.1;Name=WP_038270661.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989995.1;locus_tag=LPH39_RS09390;product=DNA-3-methyladenine glycosylase;protein_id=WP_038270661.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2280414 2280980 . - . ID=gene-LPH39_RS09395;Name=LPH39_RS09395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09395;old_locus_tag=LPH39_09395 NZ_CP087677.1 Protein Homology CDS 2280414 2280980 . - 0 ID=cds-WP_038270662.1;Parent=gene-LPH39_RS09395;Dbxref=Genbank:WP_038270662.1;Name=WP_038270662.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893832.1;locus_tag=LPH39_RS09395;product=YceI family protein;protein_id=WP_038270662.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2280991 2281557 . - . ID=gene-LPH39_RS09400;Name=LPH39_RS09400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09400;old_locus_tag=LPH39_09400 NZ_CP087677.1 Protein Homology CDS 2280991 2281557 . - 0 ID=cds-WP_038270663.1;Parent=gene-LPH39_RS09400;Dbxref=Genbank:WP_038270663.1;Name=WP_038270663.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893833.1;locus_tag=LPH39_RS09400;product=cytochrome b;protein_id=WP_038270663.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2281569 2282273 . - . ID=gene-LPH39_RS09405;Name=LPH39_RS09405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09405;old_locus_tag=LPH39_09405 NZ_CP087677.1 Protein Homology CDS 2281569 2282273 . - 0 ID=cds-WP_069636203.1;Parent=gene-LPH39_RS09405;Dbxref=Genbank:WP_069636203.1;Name=WP_069636203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893834.1;locus_tag=LPH39_RS09405;product=YceI family protein;protein_id=WP_069636203.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2282366 2285938 . + . ID=gene-LPH39_RS09410;Name=LPH39_RS09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09410;old_locus_tag=LPH39_09410 NZ_CP087677.1 Protein Homology CDS 2282366 2285938 . + 0 ID=cds-WP_038270665.1;Parent=gene-LPH39_RS09410;Dbxref=Genbank:WP_038270665.1;Name=WP_038270665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851779.1;locus_tag=LPH39_RS09410;product=hybrid sensor histidine kinase/response regulator;protein_id=WP_038270665.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2286645 2286941 . + . ID=gene-LPH39_RS09415;Name=LPH39_RS09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09415;old_locus_tag=LPH39_09415 NZ_CP087677.1 GeneMarkS-2+ CDS 2286645 2286941 . + 0 ID=cds-WP_160199301.1;Parent=gene-LPH39_RS09415;Dbxref=Genbank:WP_160199301.1;Name=WP_160199301.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09415;product=hypothetical protein;protein_id=WP_160199301.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2287226 2288290 . - . ID=gene-LPH39_RS09420;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=LPH39_RS09420;old_locus_tag=LPH39_09420 NZ_CP087677.1 Protein Homology CDS 2287226 2288290 . - 0 ID=cds-WP_038270667.1;Parent=gene-LPH39_RS09420;Dbxref=Genbank:WP_038270667.1;Name=WP_038270667.1;Ontology_term=GO:0006779,GO:0004853;gbkey=CDS;gene=hemE;go_function=uroporphyrinogen decarboxylase activity|0004853||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407863.1;locus_tag=LPH39_RS09420;product=uroporphyrinogen decarboxylase;protein_id=WP_038270667.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2288706 2289818 . - . ID=gene-LPH39_RS09425;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=LPH39_RS09425;old_locus_tag=LPH39_09425 NZ_CP087677.1 Protein Homology CDS 2288706 2289818 . - 0 ID=cds-WP_038270668.1;Parent=gene-LPH39_RS09425;Dbxref=Genbank:WP_038270668.1;Name=WP_038270668.1;Ontology_term=GO:0009423,GO:0003856;gbkey=CDS;gene=aroB;go_function=3-dehydroquinate synthase activity|0003856||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851784.1;locus_tag=LPH39_RS09425;product=3-dehydroquinate synthase;protein_id=WP_038270668.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2289815 2290357 . - . ID=gene-LPH39_RS09430;Name=LPH39_RS09430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09430;old_locus_tag=LPH39_09430 NZ_CP087677.1 Protein Homology CDS 2289815 2290357 . - 0 ID=cds-WP_038270669.1;Parent=gene-LPH39_RS09430;Dbxref=Genbank:WP_038270669.1;Name=WP_038270669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917545.1;locus_tag=LPH39_RS09430;product=shikimate kinase;protein_id=WP_038270669.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2290634 2291233 . + . ID=gene-LPH39_RS09435;Name=pdxH;gbkey=Gene;gene=pdxH;gene_biotype=protein_coding;locus_tag=LPH39_RS09435;old_locus_tag=LPH39_09435 NZ_CP087677.1 Protein Homology CDS 2290634 2291233 . + 0 ID=cds-WP_038270670.1;Parent=gene-LPH39_RS09435;Dbxref=Genbank:WP_038270670.1;Name=WP_038270670.1;Ontology_term=GO:0008615,GO:0004733,GO:0010181;gbkey=CDS;gene=pdxH;go_function=pyridoxamine-phosphate oxidase activity|0004733||IEA,FMN binding|0010181||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381128.1;locus_tag=LPH39_RS09435;product=pyridoxamine 5'-phosphate oxidase;protein_id=WP_038270670.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2291344 2291616 . + . ID=gene-LPH39_RS09440;Name=LPH39_RS09440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09440;old_locus_tag=LPH39_09440 NZ_CP087677.1 Protein Homology CDS 2291344 2291616 . + 0 ID=cds-WP_038270672.1;Parent=gene-LPH39_RS09440;Dbxref=Genbank:WP_038270672.1;Name=WP_038270672.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013676.2;locus_tag=LPH39_RS09440;product=Tn3 family transposase;protein_id=WP_038270672.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2292120 2293862 . - . ID=gene-LPH39_RS09445;Name=LPH39_RS09445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09445;old_locus_tag=LPH39_09445 NZ_CP087677.1 Protein Homology CDS 2292120 2293862 . - 0 ID=cds-WP_038270716.1;Parent=gene-LPH39_RS09445;Dbxref=Genbank:WP_038270716.1;Name=WP_038270716.1;Ontology_term=GO:0006425,GO:0000166,GO:0004819,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,glutamine-tRNA ligase activity|0004819||IEA,ATP binding|0005524||IEA;go_process=glutaminyl-tRNA aminoacylation|0006425||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017915896.1;locus_tag=LPH39_RS09445;product=glutamine--tRNA ligase/YqeY domain fusion protein;protein_id=WP_038270716.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2294690 2294863 . + . ID=gene-LPH39_RS09450;Name=LPH39_RS09450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09450;old_locus_tag=LPH39_09450 NZ_CP087677.1 GeneMarkS-2+ CDS 2294690 2294863 . + 0 ID=cds-WP_160165144.1;Parent=gene-LPH39_RS09450;Dbxref=Genbank:WP_160165144.1;Name=WP_160165144.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09450;product=hypothetical protein;protein_id=WP_160165144.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2294984 2295718 . + . ID=gene-LPH39_RS09455;Name=LPH39_RS09455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09455;old_locus_tag=LPH39_09455 NZ_CP087677.1 Protein Homology CDS 2294984 2295718 . + 0 ID=cds-WP_038270676.1;Parent=gene-LPH39_RS09455;Dbxref=Genbank:WP_038270676.1;Name=WP_038270676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090628.1;locus_tag=LPH39_RS09455;product=copper homeostasis protein CutC;protein_id=WP_038270676.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2297087 2297245 . + . ID=gene-LPH39_RS09460;Name=LPH39_RS09460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09460;old_locus_tag=LPH39_09460 NZ_CP087677.1 GeneMarkS-2+ CDS 2297087 2297245 . + 0 ID=cds-WP_160165146.1;Parent=gene-LPH39_RS09460;Dbxref=Genbank:WP_160165146.1;Name=WP_160165146.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09460;product=hypothetical protein;protein_id=WP_160165146.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2297447 2297692 . + . ID=gene-LPH39_RS09465;Name=LPH39_RS09465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09465;old_locus_tag=LPH39_09465 NZ_CP087677.1 Protein Homology CDS 2297447 2297692 . + 0 ID=cds-WP_230428174.1;Parent=gene-LPH39_RS09465;Dbxref=Genbank:WP_230428174.1;Name=WP_230428174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893847.1;locus_tag=LPH39_RS09465;product=hypothetical protein;protein_id=WP_230428174.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2298029 2299132 . + . ID=gene-LPH39_RS09470;Name=LPH39_RS09470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09470;old_locus_tag=LPH39_09470 NZ_CP087677.1 Protein Homology CDS 2298029 2299132 . + 0 ID=cds-WP_038270679.1;Parent=gene-LPH39_RS09470;Dbxref=Genbank:WP_038270679.1;Name=WP_038270679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089499.1;locus_tag=LPH39_RS09470;product=sulfate ABC transporter substrate-binding protein;protein_id=WP_038270679.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2299136 2299996 . + . ID=gene-LPH39_RS09475;Name=cysT;gbkey=Gene;gene=cysT;gene_biotype=protein_coding;locus_tag=LPH39_RS09475;old_locus_tag=LPH39_09475 NZ_CP087677.1 Protein Homology CDS 2299136 2299996 . + 0 ID=cds-WP_038270680.1;Parent=gene-LPH39_RS09475;Dbxref=Genbank:WP_038270680.1;Name=WP_038270680.1;Ontology_term=GO:0008272,GO:0015419,GO:0005886,GO:0055052;gbkey=CDS;gene=cysT;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transport|0008272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090632.1;locus_tag=LPH39_RS09475;product=sulfate ABC transporter permease subunit CysT;protein_id=WP_038270680.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2300008 2300952 . + . ID=gene-LPH39_RS09480;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=LPH39_RS09480;old_locus_tag=LPH39_09480 NZ_CP087677.1 Protein Homology CDS 2300008 2300952 . + 0 ID=cds-WP_051482278.1;Parent=gene-LPH39_RS09480;Dbxref=Genbank:WP_051482278.1;Name=WP_051482278.1;Ontology_term=GO:0008272,GO:0015419,GO:0005886,GO:0055052;gbkey=CDS;gene=cysW;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transport|0008272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506838.1;locus_tag=LPH39_RS09480;product=sulfate ABC transporter permease subunit CysW;protein_id=WP_051482278.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2300966 2302012 . + . ID=gene-LPH39_RS09485;Name=LPH39_RS09485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09485;old_locus_tag=LPH39_09485 NZ_CP087677.1 Protein Homology CDS 2300966 2302012 . + 0 ID=cds-WP_038270717.1;Parent=gene-LPH39_RS09485;Dbxref=Genbank:WP_038270717.1;Name=WP_038270717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156238.1;locus_tag=LPH39_RS09485;product=sulfate/molybdate ABC transporter ATP-binding protein;protein_id=WP_038270717.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2302699 2303295 . - . ID=gene-LPH39_RS09490;Name=LPH39_RS09490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09490;old_locus_tag=LPH39_09490 NZ_CP087677.1 Protein Homology CDS 2302699 2303295 . - 0 ID=cds-WP_162814073.1;Parent=gene-LPH39_RS09490;Dbxref=Genbank:WP_162814073.1;Name=WP_162814073.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017739.2;locus_tag=LPH39_RS09490;product=contractile injection system protein%2C VgrG/Pvc8 family;protein_id=WP_162814073.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2303507 2303563 . - . ID=gene-LPH39_RS09495;Name=LPH39_RS09495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS09495;old_locus_tag=LPH39_09495;partial=true;pseudo=true;start_range=.,2303507 NZ_CP087677.1 Protein Homology CDS 2303507 2303563 . - 0 ID=cds-LPH39_RS09495;Parent=gene-LPH39_RS09495;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017316.2;locus_tag=LPH39_RS09495;partial=true;product=phage tail protein;pseudo=true;start_range=.,2303507;transl_table=11 NZ_CP087677.1 RefSeq gene 2303560 2303814 . - . ID=gene-LPH39_RS09500;Name=LPH39_RS09500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09500;old_locus_tag=LPH39_09500 NZ_CP087677.1 Protein Homology CDS 2303560 2303814 . - 0 ID=cds-WP_230428278.1;Parent=gene-LPH39_RS09500;Dbxref=Genbank:WP_230428278.1;Name=WP_230428278.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018674.2;locus_tag=LPH39_RS09500;product=phage tail protein;protein_id=WP_230428278.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2303887 2304369 . - . ID=gene-LPH39_RS09505;Name=LPH39_RS09505;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS09505;old_locus_tag=LPH39_09505;pseudo=true NZ_CP087677.1 Protein Homology CDS 2303887 2304369 . - 0 ID=cds-LPH39_RS09505;Parent=gene-LPH39_RS09505;Note=internal stop;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: protein motif:HMM:TIGR01634.1;locus_tag=LPH39_RS09505;product=phage tail protein I;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2304362 2305255 . - . ID=gene-LPH39_RS09510;Name=LPH39_RS09510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09510;old_locus_tag=LPH39_09510 NZ_CP087677.1 Protein Homology CDS 2304362 2305255 . - 0 ID=cds-WP_038270682.1;Parent=gene-LPH39_RS09510;Dbxref=Genbank:WP_038270682.1;Name=WP_038270682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893248.1;locus_tag=LPH39_RS09510;product=baseplate J/gp47 family protein;protein_id=WP_038270682.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2305255 2305584 . - . ID=gene-LPH39_RS09515;Name=LPH39_RS09515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09515;old_locus_tag=LPH39_09515 NZ_CP087677.1 Protein Homology CDS 2305255 2305584 . - 0 ID=cds-WP_230428175.1;Parent=gene-LPH39_RS09515;Dbxref=Genbank:WP_230428175.1;Name=WP_230428175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088650.1;locus_tag=LPH39_RS09515;product=GPW/gp25 family protein;protein_id=WP_230428175.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2305685 2305963 . + . ID=gene-LPH39_RS09520;Name=LPH39_RS09520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09520;old_locus_tag=LPH39_09520 NZ_CP087677.1 Protein Homology CDS 2305685 2305963 . + 0 ID=cds-WP_038270683.1;Parent=gene-LPH39_RS09520;Dbxref=Genbank:WP_038270683.1;Name=WP_038270683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010952670.1;locus_tag=LPH39_RS09520;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_038270683.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2305967 2306266 . + . ID=gene-LPH39_RS09525;Name=LPH39_RS09525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09525;old_locus_tag=LPH39_09525 NZ_CP087677.1 Protein Homology CDS 2305967 2306266 . + 0 ID=cds-WP_081755408.1;Parent=gene-LPH39_RS09525;Dbxref=Genbank:WP_081755408.1;Name=WP_081755408.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850959.1;locus_tag=LPH39_RS09525;product=HigA family addiction module antitoxin;protein_id=WP_081755408.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2306276 2306572 . - . ID=gene-LPH39_RS09530;Name=LPH39_RS09530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09530;old_locus_tag=LPH39_09530 NZ_CP087677.1 Protein Homology CDS 2306276 2306572 . - 0 ID=cds-WP_230428176.1;Parent=gene-LPH39_RS09530;Dbxref=Genbank:WP_230428176.1;Name=WP_230428176.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: protein motif:HMM:TIGR01644.1;locus_tag=LPH39_RS09530;product=phage baseplate assembly protein V;protein_id=WP_230428176.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2306526 2306735 . - . ID=gene-LPH39_RS09535;Name=LPH39_RS09535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09535;old_locus_tag=LPH39_09535 NZ_CP087677.1 Protein Homology CDS 2306526 2306735 . - 0 ID=cds-WP_230428177.1;Parent=gene-LPH39_RS09535;Dbxref=Genbank:WP_230428177.1;Name=WP_230428177.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: protein motif:HMM:TIGR01644.1;locus_tag=LPH39_RS09535;product=phage baseplate assembly protein V;protein_id=WP_230428177.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2306735 2307388 . - . ID=gene-LPH39_RS09540;Name=LPH39_RS09540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09540;old_locus_tag=LPH39_09540 NZ_CP087677.1 GeneMarkS-2+ CDS 2306735 2307388 . - 0 ID=cds-WP_230428178.1;Parent=gene-LPH39_RS09540;Dbxref=Genbank:WP_230428178.1;Name=WP_230428178.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09540;product=hypothetical protein;protein_id=WP_230428178.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2307364 2307813 . - . ID=gene-LPH39_RS09545;Name=LPH39_RS09545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09545;old_locus_tag=LPH39_09545 NZ_CP087677.1 Protein Homology CDS 2307364 2307813 . - 0 ID=cds-WP_230428179.1;Parent=gene-LPH39_RS09545;Dbxref=Genbank:WP_230428179.1;Name=WP_230428179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852727.1;locus_tag=LPH39_RS09545;product=hypothetical protein;protein_id=WP_230428179.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2307903 2308196 . - . ID=gene-LPH39_RS09550;Name=LPH39_RS09550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09550;old_locus_tag=LPH39_09550 NZ_CP087677.1 GeneMarkS-2+ CDS 2307903 2308196 . - 0 ID=cds-WP_038270685.1;Parent=gene-LPH39_RS09550;Dbxref=Genbank:WP_038270685.1;Name=WP_038270685.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09550;product=hypothetical protein;protein_id=WP_038270685.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2308534 2308782 . - . ID=gene-LPH39_RS09555;Name=LPH39_RS09555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09555;old_locus_tag=LPH39_09555 NZ_CP087677.1 GeneMarkS-2+ CDS 2308534 2308782 . - 0 ID=cds-WP_038270686.1;Parent=gene-LPH39_RS09555;Dbxref=Genbank:WP_038270686.1;Name=WP_038270686.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09555;product=hypothetical protein;protein_id=WP_038270686.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2308821 2310205 . - . ID=gene-LPH39_RS09560;Name=LPH39_RS09560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS09560;old_locus_tag=LPH39_09560;pseudo=true NZ_CP087677.1 Protein Homology CDS 2308821 2310205 . - 0 ID=cds-LPH39_RS09560;Parent=gene-LPH39_RS09560;Note=frameshifted%3B internal stop;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097617.1;locus_tag=LPH39_RS09560;product=phage major capsid protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2310304 2310753 . - . ID=gene-LPH39_RS09565;Name=LPH39_RS09565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09565;old_locus_tag=LPH39_09565 NZ_CP087677.1 GeneMarkS-2+ CDS 2310304 2310753 . - 0 ID=cds-WP_230428180.1;Parent=gene-LPH39_RS09565;Dbxref=Genbank:WP_230428180.1;Name=WP_230428180.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09565;product=hypothetical protein;protein_id=WP_230428180.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2310772 2311413 . - . ID=gene-LPH39_RS09570;Name=LPH39_RS09570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09570;old_locus_tag=LPH39_09570 NZ_CP087677.1 Protein Homology CDS 2310772 2311413 . - 0 ID=cds-WP_038270687.1;Parent=gene-LPH39_RS09570;Dbxref=Genbank:WP_038270687.1;Name=WP_038270687.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017673.2;locus_tag=LPH39_RS09570;product=phage terminase large subunit family protein;protein_id=WP_038270687.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2311397 2311603 . - . ID=gene-LPH39_RS09575;Name=LPH39_RS09575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09575;old_locus_tag=LPH39_09575 NZ_CP087677.1 Protein Homology CDS 2311397 2311603 . - 0 ID=cds-WP_038270689.1;Parent=gene-LPH39_RS09575;Dbxref=Genbank:WP_038270689.1;Name=WP_038270689.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017673.2;locus_tag=LPH39_RS09575;product=phage terminase large subunit family protein;protein_id=WP_038270689.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2312041 2312346 . + . ID=gene-LPH39_RS09580;Name=LPH39_RS09580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09580;old_locus_tag=LPH39_09580 NZ_CP087677.1 GeneMarkS-2+ CDS 2312041 2312346 . + 0 ID=cds-WP_051482274.1;Parent=gene-LPH39_RS09580;Dbxref=Genbank:WP_051482274.1;Name=WP_051482274.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09580;product=hypothetical protein;protein_id=WP_051482274.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2312424 2312615 . + . ID=gene-LPH39_RS09585;Name=LPH39_RS09585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09585;old_locus_tag=LPH39_09585 NZ_CP087677.1 GeneMarkS-2+ CDS 2312424 2312615 . + 0 ID=cds-WP_051482275.1;Parent=gene-LPH39_RS09585;Dbxref=Genbank:WP_051482275.1;Name=WP_051482275.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09585;product=hypothetical protein;protein_id=WP_051482275.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2312726 2313076 . - . ID=gene-LPH39_RS09590;Name=LPH39_RS09590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09590;old_locus_tag=LPH39_09590 NZ_CP087677.1 GeneMarkS-2+ CDS 2312726 2313076 . - 0 ID=cds-WP_230428181.1;Parent=gene-LPH39_RS09590;Dbxref=Genbank:WP_230428181.1;Name=WP_230428181.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09590;product=hypothetical protein;protein_id=WP_230428181.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2313678 2314010 . + . ID=gene-LPH39_RS09595;Name=LPH39_RS09595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09595;old_locus_tag=LPH39_09595 NZ_CP087677.1 Protein Homology CDS 2313678 2314010 . + 0 ID=cds-WP_038270693.1;Parent=gene-LPH39_RS09595;Dbxref=Genbank:WP_038270693.1;Name=WP_038270693.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852216.1;locus_tag=LPH39_RS09595;product=hypothetical protein;protein_id=WP_038270693.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2314014 2314841 . + . ID=gene-LPH39_RS09600;Name=LPH39_RS09600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09600;old_locus_tag=LPH39_09600 NZ_CP087677.1 Protein Homology CDS 2314014 2314841 . + 0 ID=cds-WP_038270695.1;Parent=gene-LPH39_RS09600;Dbxref=Genbank:WP_038270695.1;Name=WP_038270695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852217.1;locus_tag=LPH39_RS09600;product=DUF2303 family protein;protein_id=WP_038270695.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2314998 2315399 . + . ID=gene-LPH39_RS09605;Name=LPH39_RS09605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09605;old_locus_tag=LPH39_09605 NZ_CP087677.1 GeneMarkS-2+ CDS 2314998 2315399 . + 0 ID=cds-WP_160165148.1;Parent=gene-LPH39_RS09605;Dbxref=Genbank:WP_160165148.1;Name=WP_160165148.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09605;product=PD-(D/E)XK nuclease-like domain-containing protein;protein_id=WP_160165148.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2315403 2315747 . + . ID=gene-LPH39_RS09610;Name=LPH39_RS09610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09610;old_locus_tag=LPH39_09610 NZ_CP087677.1 Protein Homology CDS 2315403 2315747 . + 0 ID=cds-WP_038270697.1;Parent=gene-LPH39_RS09610;Dbxref=Genbank:WP_038270697.1;Name=WP_038270697.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024096.2;locus_tag=LPH39_RS09610;product=PD-(D/E)XK nuclease-like domain-containing protein;protein_id=WP_038270697.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2315757 2316329 . + . ID=gene-LPH39_RS09615;Name=LPH39_RS09615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09615;old_locus_tag=LPH39_09615 NZ_CP087677.1 GeneMarkS-2+ CDS 2315757 2316329 . + 0 ID=cds-WP_051482276.1;Parent=gene-LPH39_RS09615;Dbxref=Genbank:WP_051482276.1;Name=WP_051482276.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09615;product=hypothetical protein;protein_id=WP_051482276.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2316983 2317909 . - . ID=gene-LPH39_RS09620;Name=LPH39_RS09620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09620;old_locus_tag=LPH39_09620 NZ_CP087677.1 Protein Homology CDS 2316983 2317909 . - 0 ID=cds-WP_038270698.1;Parent=gene-LPH39_RS09620;Dbxref=Genbank:WP_038270698.1;Name=WP_038270698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484402.1;locus_tag=LPH39_RS09620;product=lauroyl acyltransferase;protein_id=WP_038270698.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2318307 2320172 . + . ID=gene-LPH39_RS09625;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=LPH39_RS09625;old_locus_tag=LPH39_09625 NZ_CP087677.1 Protein Homology CDS 2318307 2320172 . + 0 ID=cds-WP_038270699.1;Parent=gene-LPH39_RS09625;Dbxref=Genbank:WP_038270699.1;Name=WP_038270699.1;Ontology_term=GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoD;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157069.1;locus_tag=LPH39_RS09625;product=RNA polymerase sigma factor RpoD;protein_id=WP_038270699.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2320782 2320973 . + . ID=gene-LPH39_RS09630;Name=LPH39_RS09630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09630;old_locus_tag=LPH39_09630 NZ_CP087677.1 GeneMarkS-2+ CDS 2320782 2320973 . + 0 ID=cds-WP_038270700.1;Parent=gene-LPH39_RS09630;Dbxref=Genbank:WP_038270700.1;Name=WP_038270700.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09630;product=hypothetical protein;protein_id=WP_038270700.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2322972 2325221 . - . ID=gene-LPH39_RS09635;Name=parC;gbkey=Gene;gene=parC;gene_biotype=protein_coding;locus_tag=LPH39_RS09635;old_locus_tag=LPH39_09635 NZ_CP087677.1 Protein Homology CDS 2322972 2325221 . - 0 ID=cds-WP_038272689.1;Parent=gene-LPH39_RS09635;Dbxref=Genbank:WP_038272689.1;Name=WP_038272689.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parC;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483492.1;locus_tag=LPH39_RS09635;product=DNA topoisomerase IV subunit A;protein_id=WP_038272689.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2325619 2326050 . + . ID=gene-LPH39_RS09640;Name=LPH39_RS09640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09640;old_locus_tag=LPH39_09640 NZ_CP087677.1 Protein Homology CDS 2325619 2326050 . + 0 ID=cds-WP_038272687.1;Parent=gene-LPH39_RS09640;Dbxref=Genbank:WP_038272687.1;Name=WP_038272687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893858.1;locus_tag=LPH39_RS09640;product=MarR family transcriptional regulator;protein_id=WP_038272687.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2326047 2327537 . + . ID=gene-LPH39_RS09645;Name=LPH39_RS09645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09645;old_locus_tag=LPH39_09645 NZ_CP087677.1 Protein Homology CDS 2326047 2327537 . + 0 ID=cds-WP_038272685.1;Parent=gene-LPH39_RS09645;Dbxref=Genbank:WP_038272685.1;Name=WP_038272685.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810731.1;locus_tag=LPH39_RS09645;product=efflux transporter outer membrane subunit;protein_id=WP_038272685.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2327548 2328726 . + . ID=gene-LPH39_RS09650;Name=LPH39_RS09650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09650;old_locus_tag=LPH39_09650 NZ_CP087677.1 Protein Homology CDS 2327548 2328726 . + 0 ID=cds-WP_038272696.1;Parent=gene-LPH39_RS09650;Dbxref=Genbank:WP_038272696.1;Name=WP_038272696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005408768.1;locus_tag=LPH39_RS09650;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_038272696.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2328736 2330301 . + . ID=gene-LPH39_RS09655;Name=LPH39_RS09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09655;old_locus_tag=LPH39_09655 NZ_CP087677.1 Protein Homology CDS 2328736 2330301 . + 0 ID=cds-WP_051482376.1;Parent=gene-LPH39_RS09655;Dbxref=Genbank:WP_051482376.1;Name=WP_051482376.1;Ontology_term=GO:0006855,GO:0009410,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_process=xenobiotic transmembrane transport|0006855||IEA,response to xenobiotic stimulus|0009410||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012510532.1;locus_tag=LPH39_RS09655;product=DHA2 family efflux MFS transporter permease subunit;protein_id=WP_051482376.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2331002 2331769 . - . ID=gene-LPH39_RS09660;Name=bioH;gbkey=Gene;gene=bioH;gene_biotype=protein_coding;locus_tag=LPH39_RS09660;old_locus_tag=LPH39_09660 NZ_CP087677.1 Protein Homology CDS 2331002 2331769 . - 0 ID=cds-WP_038272683.1;Parent=gene-LPH39_RS09660;Dbxref=Genbank:WP_038272683.1;Name=WP_038272683.1;Ontology_term=GO:0009102,GO:0003824;gbkey=CDS;gene=bioH;go_function=catalytic activity|0003824||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968482.1;locus_tag=LPH39_RS09660;product=pimeloyl-ACP methyl ester esterase BioH;protein_id=WP_038272683.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2331925 2333130 . - . ID=gene-LPH39_RS09665;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;locus_tag=LPH39_RS09665;old_locus_tag=LPH39_09665 NZ_CP087677.1 Protein Homology CDS 2331925 2333130 . - 0 ID=cds-WP_038272681.1;Parent=gene-LPH39_RS09665;Dbxref=Genbank:WP_038272681.1;Name=WP_038272681.1;Ontology_term=GO:0009102,GO:0008710;gbkey=CDS;gene=bioF;go_function=8-amino-7-oxononanoate synthase activity|0008710||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090644.1;locus_tag=LPH39_RS09665;product=8-amino-7-oxononanoate synthase;protein_id=WP_038272681.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2334010 2335173 . + . ID=gene-LPH39_RS09670;Name=LPH39_RS09670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09670;old_locus_tag=LPH39_09670 NZ_CP087677.1 Protein Homology CDS 2334010 2335173 . + 0 ID=cds-WP_038272676.1;Parent=gene-LPH39_RS09670;Dbxref=Genbank:WP_038272676.1;Name=WP_038272676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238044.1;locus_tag=LPH39_RS09670;product=heme A synthase;protein_id=WP_038272676.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2335176 2336075 . + . ID=gene-LPH39_RS09675;Name=cyoE;gbkey=Gene;gene=cyoE;gene_biotype=protein_coding;locus_tag=LPH39_RS09675;old_locus_tag=LPH39_09675 NZ_CP087677.1 Protein Homology CDS 2335176 2336075 . + 0 ID=cds-WP_038272675.1;Parent=gene-LPH39_RS09675;Dbxref=Genbank:WP_038272675.1;Name=WP_038272675.1;Ontology_term=GO:0006783,GO:0008495;gbkey=CDS;gene=cyoE;go_function=protoheme IX farnesyltransferase activity|0008495||IEA;go_process=heme biosynthetic process|0006783||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851978.1;locus_tag=LPH39_RS09675;product=heme o synthase;protein_id=WP_038272675.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2337015 2337854 . + . ID=gene-LPH39_RS09680;Name=LPH39_RS09680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09680;old_locus_tag=LPH39_09680 NZ_CP087677.1 Protein Homology CDS 2337015 2337854 . + 0 ID=cds-WP_051482375.1;Parent=gene-LPH39_RS09680;Dbxref=Genbank:WP_051482375.1;Name=WP_051482375.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851979.1;locus_tag=LPH39_RS09680;product=N-acyl homoserine lactonase family protein;protein_id=WP_051482375.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2338362 2339612 . - . ID=gene-LPH39_RS09685;Name=LPH39_RS09685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09685;old_locus_tag=LPH39_09685 NZ_CP087677.1 Protein Homology CDS 2338362 2339612 . - 0 ID=cds-WP_038272671.1;Parent=gene-LPH39_RS09685;Dbxref=Genbank:WP_038272671.1;Name=WP_038272671.1;Ontology_term=GO:0001680,GO:0003723,GO:0004810,GO:0005524;gbkey=CDS;go_function=RNA binding|0003723||IEA,CCA tRNA nucleotidyltransferase|0004810||IEA,ATP binding|0005524||IEA;go_process=tRNA 3'-terminal CCA addition|0001680||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851980.1;locus_tag=LPH39_RS09685;product=multifunctional CCA addition/repair protein;protein_id=WP_038272671.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2339696 2341639 . - . ID=gene-LPH39_RS09690;Name=LPH39_RS09690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09690;old_locus_tag=LPH39_09690 NZ_CP087677.1 Protein Homology CDS 2339696 2341639 . - 0 ID=cds-WP_038272670.1;Parent=gene-LPH39_RS09690;Dbxref=Genbank:WP_038272670.1;Name=WP_038272670.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090648.1;locus_tag=LPH39_RS09690;product=lytic transglycosylase domain-containing protein;protein_id=WP_038272670.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2342967 2343389 . - . ID=gene-LPH39_RS09695;Name=LPH39_RS09695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09695;old_locus_tag=LPH39_09695 NZ_CP087677.1 Protein Homology CDS 2342967 2343389 . - 0 ID=cds-WP_038272666.1;Parent=gene-LPH39_RS09695;Dbxref=Genbank:WP_038272666.1;Name=WP_038272666.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018974490.1;locus_tag=LPH39_RS09695;product=cupin domain-containing protein;protein_id=WP_038272666.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2345045 2345887 . - . ID=gene-LPH39_RS09700;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=LPH39_RS09700;old_locus_tag=LPH39_09700 NZ_CP087677.1 Protein Homology CDS 2345045 2345887 . - 0 ID=cds-WP_114867088.1;Parent=gene-LPH39_RS09700;Dbxref=Genbank:WP_114867088.1;Name=WP_114867088.1;Note=Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein.;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=asd;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097716.1;locus_tag=LPH39_RS09700;product=archaetidylserine decarboxylase;protein_id=WP_114867088.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2345884 2346075 . - . ID=gene-LPH39_RS09705;Name=LPH39_RS09705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09705;old_locus_tag=LPH39_09705 NZ_CP087677.1 GeneMarkS-2+ CDS 2345884 2346075 . - 0 ID=cds-WP_114867089.1;Parent=gene-LPH39_RS09705;Dbxref=Genbank:WP_114867089.1;Name=WP_114867089.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09705;product=hypothetical protein;protein_id=WP_114867089.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2346156 2346604 . - . ID=gene-LPH39_RS09710;Name=LPH39_RS09710;end_range=2346604,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS09710;old_locus_tag=LPH39_09710;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 2346156 2346604 . - 0 ID=cds-LPH39_RS09710;Parent=gene-LPH39_RS09710;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0000150,GO:0003677;end_range=2346604,.;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1;locus_tag=LPH39_RS09710;partial=true;product=recombinase family protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2346663 2347490 . - . ID=gene-LPH39_RS09715;Name=LPH39_RS09715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09715;old_locus_tag=LPH39_09715 NZ_CP087677.1 GeneMarkS-2+ CDS 2346663 2347490 . - 0 ID=cds-WP_152536623.1;Parent=gene-LPH39_RS09715;Dbxref=Genbank:WP_152536623.1;Name=WP_152536623.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09715;product=hypothetical protein;protein_id=WP_152536623.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2347559 2347705 . - . ID=gene-LPH39_RS09720;Name=LPH39_RS09720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09720;old_locus_tag=LPH39_09720 NZ_CP087677.1 GeneMarkS-2+ CDS 2347559 2347705 . - 0 ID=cds-WP_160165183.1;Parent=gene-LPH39_RS09720;Dbxref=Genbank:WP_160165183.1;Name=WP_160165183.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09720;product=hypothetical protein;protein_id=WP_160165183.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2347770 2348108 . - . ID=gene-LPH39_RS09725;Name=LPH39_RS09725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09725;old_locus_tag=LPH39_09725 NZ_CP087677.1 GeneMarkS-2+ CDS 2347770 2348108 . - 0 ID=cds-WP_160199299.1;Parent=gene-LPH39_RS09725;Dbxref=Genbank:WP_160199299.1;Name=WP_160199299.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09725;product=hypothetical protein;protein_id=WP_160199299.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2348494 2348973 . - . ID=gene-LPH39_RS09730;Name=LPH39_RS09730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09730;old_locus_tag=LPH39_09730 NZ_CP087677.1 Protein Homology CDS 2348494 2348973 . - 0 ID=cds-WP_038271387.1;Parent=gene-LPH39_RS09730;Dbxref=Genbank:WP_038271387.1;Name=WP_038271387.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024212.2;locus_tag=LPH39_RS09730;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_038271387.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2349210 2349518 . - . ID=gene-LPH39_RS09735;Name=LPH39_RS09735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09735;old_locus_tag=LPH39_09735 NZ_CP087677.1 GeneMarkS-2+ CDS 2349210 2349518 . - 0 ID=cds-WP_160165184.1;Parent=gene-LPH39_RS09735;Dbxref=Genbank:WP_160165184.1;Name=WP_160165184.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09735;product=hypothetical protein;protein_id=WP_160165184.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2349792 2349980 . + . ID=gene-LPH39_RS09740;Name=LPH39_RS09740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09740;old_locus_tag=LPH39_09740 NZ_CP087677.1 Protein Homology CDS 2349792 2349980 . + 0 ID=cds-WP_051482330.1;Parent=gene-LPH39_RS09740;Dbxref=Genbank:WP_051482330.1;Name=WP_051482330.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018180.2;locus_tag=LPH39_RS09740;product=epoxide hydrolase N-terminal domain-containing protein;protein_id=WP_051482330.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2350055 2350579 . + . ID=gene-LPH39_RS09745;Name=LPH39_RS09745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09745;old_locus_tag=LPH39_09745 NZ_CP087677.1 GeneMarkS-2+ CDS 2350055 2350579 . + 0 ID=cds-WP_152536625.1;Parent=gene-LPH39_RS09745;Dbxref=Genbank:WP_152536625.1;Name=WP_152536625.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09745;product=hypothetical protein;protein_id=WP_152536625.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2350599 2351503 . + . ID=gene-LPH39_RS09750;Name=LPH39_RS09750;end_range=2351503,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS09750;old_locus_tag=LPH39_09750;partial=true;pseudo=true;start_range=.,2350599 NZ_CP087677.1 Protein Homology CDS 2350599 2351503 . + 0 ID=cds-LPH39_RS09750;Parent=gene-LPH39_RS09750;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2351503,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083476.1;locus_tag=LPH39_RS09750;partial=true;product=calcium-binding protein;pseudo=true;start_range=.,2350599;transl_table=11 NZ_CP087677.1 RefSeq gene 2351660 2354350 . - . ID=gene-LPH39_RS09755;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=LPH39_RS09755;old_locus_tag=LPH39_09755 NZ_CP087677.1 Protein Homology CDS 2351660 2354350 . - 0 ID=cds-WP_038271391.1;Parent=gene-LPH39_RS09755;Dbxref=Genbank:WP_038271391.1;Name=WP_038271391.1;Ontology_term=GO:0006086,GO:0004738,GO:0045250;gbkey=CDS;gene=aceE;go_component=cytosolic pyruvate dehydrogenase complex|0045250||IEA;go_function=pyruvate dehydrogenase activity|0004738||IEA;go_process=acetyl-CoA biosynthetic process from pyruvate|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660853.1;locus_tag=LPH39_RS09755;product=pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type;protein_id=WP_038271391.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2357766 2358710 . + . ID=gene-LPH39_RS09760;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=LPH39_RS09760;old_locus_tag=LPH39_09760 NZ_CP087677.1 Protein Homology CDS 2357766 2358710 . + 0 ID=cds-WP_038271441.1;Parent=gene-LPH39_RS09760;Dbxref=Genbank:WP_038271441.1;Name=WP_038271441.1;Ontology_term=GO:0006633,GO:0004314;gbkey=CDS;gene=fabD;go_function=[acyl-carrier-protein] S-malonyltransferase activity|0004314||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607396.1;locus_tag=LPH39_RS09760;product=ACP S-malonyltransferase;protein_id=WP_038271441.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2358807 2359550 . + . ID=gene-LPH39_RS09765;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=LPH39_RS09765;old_locus_tag=LPH39_09765 NZ_CP087677.1 Protein Homology CDS 2358807 2359550 . + 0 ID=cds-WP_038271392.1;Parent=gene-LPH39_RS09765;Dbxref=Genbank:WP_038271392.1;Name=WP_038271392.1;Ontology_term=GO:0006633,GO:0004316,GO:0051287;gbkey=CDS;gene=fabG;go_function=3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|0004316||IEA,NAD binding|0051287||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814323.1;locus_tag=LPH39_RS09765;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_038271392.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2359717 2359956 . + . ID=gene-LPH39_RS09770;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=LPH39_RS09770;old_locus_tag=LPH39_09770 NZ_CP087677.1 Protein Homology CDS 2359717 2359956 . + 0 ID=cds-WP_004083472.1;Parent=gene-LPH39_RS09770;Dbxref=Genbank:WP_004083472.1;Name=WP_004083472.1;Ontology_term=GO:0006633;gbkey=CDS;gene=acpP;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083472.1;locus_tag=LPH39_RS09770;product=acyl carrier protein;protein_id=WP_004083472.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2360116 2361351 . + . ID=gene-LPH39_RS09775;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;locus_tag=LPH39_RS09775;old_locus_tag=LPH39_09775 NZ_CP087677.1 Protein Homology CDS 2360116 2361351 . + 0 ID=cds-WP_038271393.1;Parent=gene-LPH39_RS09775;Dbxref=Genbank:WP_038271393.1;Name=WP_038271393.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabF;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302031.1;locus_tag=LPH39_RS09775;product=beta-ketoacyl-ACP synthase II;protein_id=WP_038271393.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2361567 2362925 . + . ID=gene-LPH39_RS09780;Name=LPH39_RS09780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09780;old_locus_tag=LPH39_09780 NZ_CP087677.1 Protein Homology CDS 2361567 2362925 . + 0 ID=cds-WP_038271394.1;Parent=gene-LPH39_RS09780;Dbxref=Genbank:WP_038271394.1;Name=WP_038271394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083470.1;locus_tag=LPH39_RS09780;product=aminodeoxychorismate synthase component I;protein_id=WP_038271394.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2363039 2364085 . + . ID=gene-LPH39_RS09785;Name=mltG;gbkey=Gene;gene=mltG;gene_biotype=protein_coding;locus_tag=LPH39_RS09785;old_locus_tag=LPH39_09785 NZ_CP087677.1 Protein Homology CDS 2363039 2364085 . + 0 ID=cds-WP_038271442.1;Parent=gene-LPH39_RS09785;Dbxref=Genbank:WP_038271442.1;Name=WP_038271442.1;Ontology_term=GO:0009252,GO:0071555,GO:0008932;gbkey=CDS;gene=mltG;go_function=lytic endotransglycosylase activity|0008932||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338004.1;locus_tag=LPH39_RS09785;product=endolytic transglycosylase MltG;protein_id=WP_038271442.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2364114 2365076 . + . ID=gene-LPH39_RS09790;Name=LPH39_RS09790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09790;old_locus_tag=LPH39_09790 NZ_CP087677.1 Protein Homology CDS 2364114 2365076 . + 0 ID=cds-WP_038271395.1;Parent=gene-LPH39_RS09790;Dbxref=Genbank:WP_038271395.1;Name=WP_038271395.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893200.1;locus_tag=LPH39_RS09790;product=DNA polymerase III subunit delta';protein_id=WP_038271395.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2365073 2365426 . + . ID=gene-LPH39_RS09795;Name=LPH39_RS09795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09795;old_locus_tag=LPH39_09795 NZ_CP087677.1 Protein Homology CDS 2365073 2365426 . + 0 ID=cds-WP_038271396.1;Parent=gene-LPH39_RS09795;Dbxref=Genbank:WP_038271396.1;Name=WP_038271396.1;Ontology_term=GO:0035438;gbkey=CDS;go_function=cyclic-di-GMP binding|0035438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155784.1;locus_tag=LPH39_RS09795;product=PilZ domain-containing protein;protein_id=WP_038271396.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2365488 2365562 . + . ID=gene-LPH39_RS09800;Name=LPH39_RS09800;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS09800;old_locus_tag=LPH39_09800 NZ_CP087677.1 tRNAscan-SE tRNA 2365488 2365562 . + . ID=rna-LPH39_RS09800;Parent=gene-LPH39_RS09800;anticodon=(pos:2365520..2365522);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS09800;product=tRNA-Val NZ_CP087677.1 tRNAscan-SE exon 2365488 2365562 . + . ID=exon-LPH39_RS09800-1;Parent=rna-LPH39_RS09800;anticodon=(pos:2365520..2365522);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS09800;product=tRNA-Val NZ_CP087677.1 RefSeq gene 2366842 2367519 . - . ID=gene-LPH39_RS09805;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=LPH39_RS09805;old_locus_tag=LPH39_09805 NZ_CP087677.1 Protein Homology CDS 2366842 2367519 . - 0 ID=cds-WP_038271397.1;Parent=gene-LPH39_RS09805;Dbxref=Genbank:WP_038271397.1;Name=WP_038271397.1;Ontology_term=GO:0009102,GO:0004141;gbkey=CDS;gene=bioD;go_function=dethiobiotin synthase activity|0004141||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851492.1;locus_tag=LPH39_RS09805;product=dethiobiotin synthase;protein_id=WP_038271397.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2369228 2370055 . - . ID=gene-LPH39_RS09810;Name=LPH39_RS09810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09810;old_locus_tag=LPH39_09810 NZ_CP087677.1 Protein Homology CDS 2369228 2370055 . - 0 ID=cds-WP_038271399.1;Parent=gene-LPH39_RS09810;Dbxref=Genbank:WP_038271399.1;Name=WP_038271399.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088505.1;locus_tag=LPH39_RS09810;product=inositol monophosphatase family protein;protein_id=WP_038271399.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2370175 2370933 . + . ID=gene-LPH39_RS09815;Name=LPH39_RS09815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09815;old_locus_tag=LPH39_09815 NZ_CP087677.1 Protein Homology CDS 2370175 2370933 . + 0 ID=cds-WP_038271443.1;Parent=gene-LPH39_RS09815;Dbxref=Genbank:WP_038271443.1;Name=WP_038271443.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088504.1;locus_tag=LPH39_RS09815;product=RNA methyltransferase;protein_id=WP_038271443.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2371183 2372211 . - . ID=gene-LPH39_RS09820;Name=epmB;gbkey=Gene;gene=epmB;gene_biotype=protein_coding;locus_tag=LPH39_RS09820;old_locus_tag=LPH39_09820 NZ_CP087677.1 Protein Homology CDS 2371183 2372211 . - 0 ID=cds-WP_038271400.1;Parent=gene-LPH39_RS09820;Dbxref=Genbank:WP_038271400.1;Name=WP_038271400.1;Ontology_term=GO:0072581;gbkey=CDS;gene=epmB;go_process=protein-N6-(L-lysyl)-L-lysine modification to protein-N6-(beta-lysyl)-L-lysine|0072581||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408738.1;locus_tag=LPH39_RS09820;product=EF-P beta-lysylation protein EpmB;protein_id=WP_038271400.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2372314 2372880 . + . ID=gene-LPH39_RS09825;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=LPH39_RS09825;old_locus_tag=LPH39_09825 NZ_CP087677.1 Protein Homology CDS 2372314 2372880 . + 0 ID=cds-WP_038271401.1;Parent=gene-LPH39_RS09825;Dbxref=Genbank:WP_038271401.1;Name=WP_038271401.1;Ontology_term=GO:0006414,GO:0003746,GO:0005737;gbkey=CDS;gene=efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301003.1;locus_tag=LPH39_RS09825;product=elongation factor P;protein_id=WP_038271401.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2373018 2374361 . + . ID=gene-LPH39_RS09830;Name=LPH39_RS09830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09830;old_locus_tag=LPH39_09830 NZ_CP087677.1 Protein Homology CDS 2373018 2374361 . + 0 ID=cds-WP_038271402.1;Parent=gene-LPH39_RS09830;Dbxref=Genbank:WP_038271402.1;Name=WP_038271402.1;Ontology_term=GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159956.1;locus_tag=LPH39_RS09830;product=TRZ/ATZ family hydrolase;protein_id=WP_038271402.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2374392 2375129 . + . ID=gene-LPH39_RS09835;Name=ubiG;gbkey=Gene;gene=ubiG;gene_biotype=protein_coding;locus_tag=LPH39_RS09835;old_locus_tag=LPH39_09835 NZ_CP087677.1 Protein Homology CDS 2374392 2375129 . + 0 ID=cds-WP_038271403.1;Parent=gene-LPH39_RS09835;Dbxref=Genbank:WP_038271403.1;Name=WP_038271403.1;Ontology_term=GO:0006744,GO:0008689;gbkey=CDS;gene=ubiG;go_function=3-demethylubiquinone-9 3-O-methyltransferase activity|0008689||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851498.1;locus_tag=LPH39_RS09835;product=bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG;protein_id=WP_038271403.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2375119 2375808 . + . ID=gene-LPH39_RS09840;Name=LPH39_RS09840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09840;old_locus_tag=LPH39_09840 NZ_CP087677.1 Protein Homology CDS 2375119 2375808 . + 0 ID=cds-WP_038271404.1;Parent=gene-LPH39_RS09840;Dbxref=Genbank:WP_038271404.1;Name=WP_038271404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894913.1;locus_tag=LPH39_RS09840;product=phosphoglycolate phosphatase;protein_id=WP_038271404.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2375833 2376522 . + . ID=gene-LPH39_RS09845;Name=LPH39_RS09845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09845;old_locus_tag=LPH39_09845 NZ_CP087677.1 Protein Homology CDS 2375833 2376522 . + 0 ID=cds-WP_038271405.1;Parent=gene-LPH39_RS09845;Dbxref=Genbank:WP_038271405.1;Name=WP_038271405.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156122.1;locus_tag=LPH39_RS09845;product=phytoene synthase;protein_id=WP_038271405.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2376529 2376690 . + . ID=gene-LPH39_RS09850;Name=LPH39_RS09850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09850;old_locus_tag=LPH39_09850 NZ_CP087677.1 GeneMarkS-2+ CDS 2376529 2376690 . + 0 ID=cds-WP_160165185.1;Parent=gene-LPH39_RS09850;Dbxref=Genbank:WP_160165185.1;Name=WP_160165185.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09850;product=hypothetical protein;protein_id=WP_160165185.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2377015 2378127 . - . ID=gene-LPH39_RS09855;Name=LPH39_RS09855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09855;old_locus_tag=LPH39_09855 NZ_CP087677.1 Protein Homology CDS 2377015 2378127 . - 0 ID=cds-WP_038271406.1;Parent=gene-LPH39_RS09855;Dbxref=Genbank:WP_038271406.1;Name=WP_038271406.1;Ontology_term=GO:0009058,GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088494.1;locus_tag=LPH39_RS09855;product=homoserine O-acetyltransferase;protein_id=WP_038271406.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2378767 2379366 . - . ID=gene-LPH39_RS09860;Name=LPH39_RS09860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09860;old_locus_tag=LPH39_09860 NZ_CP087677.1 Protein Homology CDS 2378767 2379366 . - 0 ID=cds-WP_038271407.1;Parent=gene-LPH39_RS09860;Dbxref=Genbank:WP_038271407.1;Name=WP_038271407.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086014.1;locus_tag=LPH39_RS09860;product=DsbE family thiol:disulfide interchange protein;protein_id=WP_038271407.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2379359 2380351 . - . ID=gene-LPH39_RS09865;Name=LPH39_RS09865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09865;old_locus_tag=LPH39_09865 NZ_CP087677.1 Protein Homology CDS 2379359 2380351 . - 0 ID=cds-WP_230428182.1;Parent=gene-LPH39_RS09865;Dbxref=Genbank:WP_230428182.1;Name=WP_230428182.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027651.2;locus_tag=LPH39_RS09865;product=hypothetical protein;protein_id=WP_230428182.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2381201 2381586 . - . ID=gene-LPH39_RS09870;Name=LPH39_RS09870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS09870;old_locus_tag=LPH39_09870;pseudo=true NZ_CP087677.1 Protein Homology CDS 2381201 2381586 . - 0 ID=cds-LPH39_RS09870;Parent=gene-LPH39_RS09870;Note=frameshifted%3B internal stop;Ontology_term=GO:0017003,GO:0017004,GO:0020037;gbkey=CDS;go_function=heme binding|0020037||IEA;go_process=protein-heme linkage|0017003||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851508.1;locus_tag=LPH39_RS09870;product=cytochrome c maturation protein CcmE;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2381639 2381815 . - . ID=gene-LPH39_RS09875;Name=ccmD;gbkey=Gene;gene=ccmD;gene_biotype=protein_coding;locus_tag=LPH39_RS09875;old_locus_tag=LPH39_09875 NZ_CP087677.1 Protein Homology CDS 2381639 2381815 . - 0 ID=cds-WP_069636214.1;Parent=gene-LPH39_RS09875;Dbxref=Genbank:WP_069636214.1;Name=WP_069636214.1;Ontology_term=GO:0015886,GO:0017004,GO:0016020;gbkey=CDS;gene=ccmD;go_component=membrane|0016020||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382686.1;locus_tag=LPH39_RS09875;product=heme exporter protein CcmD;protein_id=WP_069636214.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2381815 2381949 . - . ID=gene-LPH39_RS12065;Name=LPH39_RS12065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12065 NZ_CP087677.1 GeneMarkS-2+ CDS 2381815 2381949 . - 0 ID=cds-WP_267903175.1;Parent=gene-LPH39_RS12065;Dbxref=Genbank:WP_267903175.1;Name=WP_267903175.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12065;product=hypothetical protein;protein_id=WP_267903175.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2382191 2382789 . - . ID=gene-LPH39_RS09880;Name=LPH39_RS09880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS09880;old_locus_tag=LPH39_09880;pseudo=true NZ_CP087677.1 Protein Homology CDS 2382191 2382789 . - 0 ID=cds-LPH39_RS09880;Parent=gene-LPH39_RS09880;Note=frameshifted%3B internal stop;Ontology_term=GO:0015886,GO:0017004,GO:0015232,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003473242.1;locus_tag=LPH39_RS09880;product=heme exporter protein CcmB;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2382906 2383525 . - . ID=gene-LPH39_RS09885;Name=ccmA;gbkey=Gene;gene=ccmA;gene_biotype=pseudogene;locus_tag=LPH39_RS09885;old_locus_tag=LPH39_09885;pseudo=true NZ_CP087677.1 Protein Homology CDS 2382906 2383525 . - 0 ID=cds-LPH39_RS09885;Parent=gene-LPH39_RS09885;Note=frameshifted;Ontology_term=GO:0015886,GO:0015439,GO:0043190;gbkey=CDS;gene=ccmA;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type heme transporter activity|0015439||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088477.1;locus_tag=LPH39_RS09885;product=heme ABC exporter ATP-binding protein CcmA;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2383694 2384842 . + . ID=gene-LPH39_RS09890;Name=LPH39_RS09890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09890;old_locus_tag=LPH39_09890 NZ_CP087677.1 Protein Homology CDS 2383694 2384842 . + 0 ID=cds-WP_038271408.1;Parent=gene-LPH39_RS09890;Dbxref=Genbank:WP_038271408.1;Name=WP_038271408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964632.1;locus_tag=LPH39_RS09890;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_038271408.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2384856 2385671 . + . ID=gene-LPH39_RS09895;Name=LPH39_RS09895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09895;old_locus_tag=LPH39_09895 NZ_CP087677.1 Protein Homology CDS 2384856 2385671 . + 0 ID=cds-WP_038271409.1;Parent=gene-LPH39_RS09895;Dbxref=Genbank:WP_038271409.1;Name=WP_038271409.1;Ontology_term=GO:0006807;gbkey=CDS;go_process=nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088475.1;locus_tag=LPH39_RS09895;product=amidohydrolase;protein_id=WP_038271409.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2385761 2386198 . + . ID=gene-LPH39_RS09900;Name=LPH39_RS09900;end_range=2386198,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS09900;old_locus_tag=LPH39_09900;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 2385761 2386198 . + 0 ID=cds-LPH39_RS09900;Parent=gene-LPH39_RS09900;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2386198,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003474141.1;locus_tag=LPH39_RS09900;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2386646 2388064 . - . ID=gene-LPH39_RS09905;Name=LPH39_RS09905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09905;old_locus_tag=LPH39_09905 NZ_CP087677.1 Protein Homology CDS 2386646 2388064 . - 0 ID=cds-WP_038271410.1;Parent=gene-LPH39_RS09905;Dbxref=Genbank:WP_038271410.1;Name=WP_038271410.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088470.1;locus_tag=LPH39_RS09905;product=pseudouridine synthase;protein_id=WP_038271410.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2388061 2389038 . - . ID=gene-LPH39_RS09910;Name=scpB;gbkey=Gene;gene=scpB;gene_biotype=protein_coding;locus_tag=LPH39_RS09910;old_locus_tag=LPH39_09910 NZ_CP087677.1 Protein Homology CDS 2388061 2389038 . - 0 ID=cds-WP_038271447.1;Parent=gene-LPH39_RS09910;Dbxref=Genbank:WP_038271447.1;Name=WP_038271447.1;Ontology_term=GO:0007059,GO:0005515;gbkey=CDS;gene=scpB;go_function=protein binding|0005515||IEA;go_process=chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037358.1;locus_tag=LPH39_RS09910;product=SMC-Scp complex subunit ScpB;protein_id=WP_038271447.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2389052 2389963 . - . ID=gene-LPH39_RS09915;Name=LPH39_RS09915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09915;old_locus_tag=LPH39_09915 NZ_CP087677.1 Protein Homology CDS 2389052 2389963 . - 0 ID=cds-WP_038271411.1;Parent=gene-LPH39_RS09915;Dbxref=Genbank:WP_038271411.1;Name=WP_038271411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086003.1;locus_tag=LPH39_RS09915;product=ScpA family protein;protein_id=WP_038271411.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2390323 2390610 . + . ID=gene-LPH39_RS09920;Name=LPH39_RS09920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09920;old_locus_tag=LPH39_09920 NZ_CP087677.1 GeneMarkS-2+ CDS 2390323 2390610 . + 0 ID=cds-WP_051482334.1;Parent=gene-LPH39_RS09920;Dbxref=Genbank:WP_051482334.1;Name=WP_051482334.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09920;product=hypothetical protein;protein_id=WP_051482334.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2390607 2390879 . + . ID=gene-LPH39_RS09925;Name=LPH39_RS09925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09925;old_locus_tag=LPH39_09925 NZ_CP087677.1 Protein Homology CDS 2390607 2390879 . + 0 ID=cds-WP_038271449.1;Parent=gene-LPH39_RS09925;Dbxref=Genbank:WP_038271449.1;Name=WP_038271449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904540.1;locus_tag=LPH39_RS09925;product=BolA family transcriptional regulator;protein_id=WP_038271449.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2390860 2391051 . + . ID=gene-LPH39_RS09930;Name=LPH39_RS09930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09930;old_locus_tag=LPH39_09930 NZ_CP087677.1 GeneMarkS-2+ CDS 2390860 2391051 . + 0 ID=cds-WP_152536626.1;Parent=gene-LPH39_RS09930;Dbxref=Genbank:WP_152536626.1;Name=WP_152536626.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS09930;product=hypothetical protein;protein_id=WP_152536626.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2391477 2393078 . + . ID=gene-LPH39_RS09935;Name=LPH39_RS09935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09935;old_locus_tag=LPH39_09935 NZ_CP087677.1 Protein Homology CDS 2391477 2393078 . + 0 ID=cds-WP_038271453.1;Parent=gene-LPH39_RS09935;Dbxref=Genbank:WP_038271453.1;Name=WP_038271453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894893.1;locus_tag=LPH39_RS09935;product=hypothetical protein;protein_id=WP_038271453.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2393127 2394374 . + . ID=gene-LPH39_RS09940;Name=LPH39_RS09940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09940;old_locus_tag=LPH39_09940 NZ_CP087677.1 Protein Homology CDS 2393127 2394374 . + 0 ID=cds-WP_051482335.1;Parent=gene-LPH39_RS09940;Dbxref=Genbank:WP_051482335.1;Name=WP_051482335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852884.1;locus_tag=LPH39_RS09940;product=sugar ABC transporter substrate-binding protein;protein_id=WP_051482335.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2394371 2395252 . + . ID=gene-LPH39_RS09945;Name=LPH39_RS09945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09945;old_locus_tag=LPH39_09945 NZ_CP087677.1 Protein Homology CDS 2394371 2395252 . + 0 ID=cds-WP_038271413.1;Parent=gene-LPH39_RS09945;Dbxref=Genbank:WP_038271413.1;Name=WP_038271413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489669.1;locus_tag=LPH39_RS09945;product=sugar ABC transporter permease;protein_id=WP_038271413.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2395249 2396085 . + . ID=gene-LPH39_RS09950;Name=LPH39_RS09950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09950;old_locus_tag=LPH39_09950 NZ_CP087677.1 Protein Homology CDS 2395249 2396085 . + 0 ID=cds-WP_038271414.1;Parent=gene-LPH39_RS09950;Dbxref=Genbank:WP_038271414.1;Name=WP_038271414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017357393.1;locus_tag=LPH39_RS09950;product=carbohydrate ABC transporter permease;protein_id=WP_038271414.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2396091 2399255 . + . ID=gene-LPH39_RS09955;Name=LPH39_RS09955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09955;old_locus_tag=LPH39_09955 NZ_CP087677.1 Protein Homology CDS 2396091 2399255 . + 0 ID=cds-WP_038271415.1;Parent=gene-LPH39_RS09955;Dbxref=Genbank:WP_038271415.1;Name=WP_038271415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852202.1;locus_tag=LPH39_RS09955;product=discoidin domain-containing protein;protein_id=WP_038271415.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2399580 2400794 . - . ID=gene-LPH39_RS09960;Name=LPH39_RS09960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09960;old_locus_tag=LPH39_09960 NZ_CP087677.1 Protein Homology CDS 2399580 2400794 . - 0 ID=cds-WP_171898074.1;Parent=gene-LPH39_RS09960;Dbxref=Genbank:WP_171898074.1;Name=WP_171898074.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894888.1;locus_tag=LPH39_RS09960;product=TraB/GumN family protein;protein_id=WP_171898074.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2400922 2401809 . - . ID=gene-LPH39_RS09965;Name=LPH39_RS09965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09965;old_locus_tag=LPH39_09965 NZ_CP087677.1 Protein Homology CDS 2400922 2401809 . - 0 ID=cds-WP_038271417.1;Parent=gene-LPH39_RS09965;Dbxref=Genbank:WP_038271417.1;Name=WP_038271417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451810.1;locus_tag=LPH39_RS09965;product=carbon-nitrogen hydrolase;protein_id=WP_038271417.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2401891 2402946 . - . ID=gene-LPH39_RS09970;Name=LPH39_RS09970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09970;old_locus_tag=LPH39_09970 NZ_CP087677.1 Protein Homology CDS 2401891 2402946 . - 0 ID=cds-WP_038271418.1;Parent=gene-LPH39_RS09970;Dbxref=Genbank:WP_038271418.1;Name=WP_038271418.1;Ontology_term=GO:0009446,GO:0004668;gbkey=CDS;go_function=protein-arginine deiminase activity|0004668||IEA;go_process=putrescine biosynthetic process|0009446||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085983.1;locus_tag=LPH39_RS09970;product=agmatine deiminase family protein;protein_id=WP_038271418.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2402994 2403326 . - . ID=gene-LPH39_RS09975;Name=LPH39_RS09975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09975;old_locus_tag=LPH39_09975 NZ_CP087677.1 Protein Homology CDS 2402994 2403326 . - 0 ID=cds-WP_038271419.1;Parent=gene-LPH39_RS09975;Dbxref=Genbank:WP_038271419.1;Name=WP_038271419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894885.1;locus_tag=LPH39_RS09975;product=hypothetical protein;protein_id=WP_038271419.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2403499 2403624 . - . ID=gene-LPH39_RS09980;Name=ykgO;gbkey=Gene;gene=ykgO;gene_biotype=protein_coding;locus_tag=LPH39_RS09980;old_locus_tag=LPH39_09980 NZ_CP087677.1 Protein Homology CDS 2403499 2403624 . - 0 ID=cds-WP_004085979.1;Parent=gene-LPH39_RS09980;Dbxref=Genbank:WP_004085979.1;Name=WP_004085979.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=ykgO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098120.1;locus_tag=LPH39_RS09980;product=type B 50S ribosomal protein L36;protein_id=WP_004085979.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2403852 2404523 . + . ID=gene-LPH39_RS09985;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=LPH39_RS09985;old_locus_tag=LPH39_09985 NZ_CP087677.1 Protein Homology CDS 2403852 2404523 . + 0 ID=cds-WP_038271420.1;Parent=gene-LPH39_RS09985;Dbxref=Genbank:WP_038271420.1;Name=WP_038271420.1;Ontology_term=GO:0015949,GO:0004127;gbkey=CDS;gene=cmk;go_function=cytidylate kinase activity|0004127||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852197.1;locus_tag=LPH39_RS09985;product=(d)CMP kinase;protein_id=WP_038271420.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2404725 2406401 . + . ID=gene-LPH39_RS09990;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=LPH39_RS09990;old_locus_tag=LPH39_09990 NZ_CP087677.1 Protein Homology CDS 2404725 2406401 . + 0 ID=cds-WP_038271421.1;Parent=gene-LPH39_RS09990;Dbxref=Genbank:WP_038271421.1;Name=WP_038271421.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsA;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183099.1;locus_tag=LPH39_RS09990;product=30S ribosomal protein S1;protein_id=WP_038271421.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2406503 2406817 . + . ID=gene-LPH39_RS09995;Name=LPH39_RS09995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS09995;old_locus_tag=LPH39_09995 NZ_CP087677.1 Protein Homology CDS 2406503 2406817 . + 0 ID=cds-WP_038271422.1;Parent=gene-LPH39_RS09995;Dbxref=Genbank:WP_038271422.1;Name=WP_038271422.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677,GO:0005694;gbkey=CDS;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088432.1;locus_tag=LPH39_RS09995;product=integration host factor subunit beta;protein_id=WP_038271422.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2406867 2407163 . + . ID=gene-LPH39_RS10000;Name=LPH39_RS10000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10000;old_locus_tag=LPH39_10000 NZ_CP087677.1 Protein Homology CDS 2406867 2407163 . + 0 ID=cds-WP_038271423.1;Parent=gene-LPH39_RS10000;Dbxref=Genbank:WP_038271423.1;Name=WP_038271423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088430.1;locus_tag=LPH39_RS10000;product=LapA family protein;protein_id=WP_038271423.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2407168 2408346 . + . ID=gene-LPH39_RS10005;Name=lapB;gbkey=Gene;gene=lapB;gene_biotype=protein_coding;locus_tag=LPH39_RS10005;old_locus_tag=LPH39_10005 NZ_CP087677.1 Protein Homology CDS 2407168 2408346 . + 0 ID=cds-WP_038271424.1;Parent=gene-LPH39_RS10005;Dbxref=Genbank:WP_038271424.1;Name=WP_038271424.1;gbkey=CDS;gene=lapB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003468665.1;locus_tag=LPH39_RS10005;product=lipopolysaccharide assembly protein LapB;protein_id=WP_038271424.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2408346 2409323 . + . ID=gene-LPH39_RS10010;Name=LPH39_RS10010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10010;old_locus_tag=LPH39_10010 NZ_CP087677.1 Protein Homology CDS 2408346 2409323 . + 0 ID=cds-WP_081755449.1;Parent=gene-LPH39_RS10010;Dbxref=Genbank:WP_081755449.1;Name=WP_081755449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851517.1;locus_tag=LPH39_RS10010;product=lipopolysaccharide biosynthesis protein;protein_id=WP_081755449.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2409336 2411243 . + . ID=gene-LPH39_RS10015;Name=LPH39_RS10015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10015;old_locus_tag=LPH39_10015 NZ_CP087677.1 Protein Homology CDS 2409336 2411243 . + 0 ID=cds-WP_038271425.1;Parent=gene-LPH39_RS10015;Dbxref=Genbank:WP_038271425.1;Name=WP_038271425.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300130.1;locus_tag=LPH39_RS10015;product=nucleoside-diphosphate sugar epimerase/dehydratase;protein_id=WP_038271425.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2411243 2412133 . + . ID=gene-LPH39_RS10020;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=LPH39_RS10020;old_locus_tag=LPH39_10020 NZ_CP087677.1 Protein Homology CDS 2411243 2412133 . + 0 ID=cds-WP_038271426.1;Parent=gene-LPH39_RS10020;Dbxref=Genbank:WP_038271426.1;Name=WP_038271426.1;Ontology_term=GO:0009225,GO:0003983;gbkey=CDS;gene=galU;go_function=UTP:glucose-1-phosphate uridylyltransferase activity|0003983||IEA;go_process=nucleotide-sugar metabolic process|0009225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894877.1;locus_tag=LPH39_RS10020;product=UTP--glucose-1-phosphate uridylyltransferase GalU;protein_id=WP_038271426.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2412347 2413231 . + . ID=gene-LPH39_RS10025;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;locus_tag=LPH39_RS10025;old_locus_tag=LPH39_10025 NZ_CP087677.1 Protein Homology CDS 2412347 2413231 . + 0 ID=cds-WP_114867092.1;Parent=gene-LPH39_RS10025;Dbxref=Genbank:WP_114867092.1;Name=WP_114867092.1;Ontology_term=GO:0004488;gbkey=CDS;gene=folD;go_function=methylenetetrahydrofolate dehydrogenase (NADP+) activity|0004488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451188.1;locus_tag=LPH39_RS10025;product=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD;protein_id=WP_114867092.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2413348 2414805 . + . ID=gene-LPH39_RS10030;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;locus_tag=LPH39_RS10030;old_locus_tag=LPH39_10030 NZ_CP087677.1 Protein Homology CDS 2413348 2414805 . + 0 ID=cds-WP_038271428.1;Parent=gene-LPH39_RS10030;Dbxref=Genbank:WP_038271428.1;Name=WP_038271428.1;Ontology_term=GO:0009152,GO:0003938;gbkey=CDS;gene=guaB;go_function=IMP dehydrogenase activity|0003938||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851520.1;locus_tag=LPH39_RS10030;product=IMP dehydrogenase;protein_id=WP_038271428.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2415004 2416572 . + . ID=gene-LPH39_RS10035;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=LPH39_RS10035;old_locus_tag=LPH39_10035 NZ_CP087677.1 Protein Homology CDS 2415004 2416572 . + 0 ID=cds-WP_038271429.1;Parent=gene-LPH39_RS10035;Dbxref=Genbank:WP_038271429.1;Name=WP_038271429.1;Ontology_term=GO:0006177,GO:0003922,GO:0005524,GO:0016462;gbkey=CDS;gene=guaA;go_function=GMP synthase (glutamine-hydrolyzing) activity|0003922||IEA,ATP binding|0005524||IEA,pyrophosphatase activity|0016462||IEA;go_process=GMP biosynthetic process|0006177||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012510808.1;locus_tag=LPH39_RS10035;product=glutamine-hydrolyzing GMP synthase;protein_id=WP_038271429.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2416917 2417192 . + . ID=gene-LPH39_RS10040;Name=LPH39_RS10040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10040;old_locus_tag=LPH39_10040 NZ_CP087677.1 GeneMarkS-2+ CDS 2416917 2417192 . + 0 ID=cds-WP_230428184.1;Parent=gene-LPH39_RS10040;Dbxref=Genbank:WP_230428184.1;Name=WP_230428184.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10040;product=hypothetical protein;protein_id=WP_230428184.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2417332 2417577 . + . ID=gene-LPH39_RS10045;Name=LPH39_RS10045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10045;old_locus_tag=LPH39_10045 NZ_CP087677.1 GeneMarkS-2+ CDS 2417332 2417577 . + 0 ID=cds-WP_171898047.1;Parent=gene-LPH39_RS10045;Dbxref=Genbank:WP_171898047.1;Name=WP_171898047.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10045;product=hypothetical protein;protein_id=WP_171898047.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2417914 2418162 . + . ID=gene-LPH39_RS10050;Name=LPH39_RS10050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10050;old_locus_tag=LPH39_10050 NZ_CP087677.1 GeneMarkS-2+ CDS 2417914 2418162 . + 0 ID=cds-WP_171898048.1;Parent=gene-LPH39_RS10050;Dbxref=Genbank:WP_171898048.1;Name=WP_171898048.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10050;product=hypothetical protein;protein_id=WP_171898048.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2418446 2419438 . - . ID=gene-LPH39_RS10055;Name=LPH39_RS10055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10055;old_locus_tag=LPH39_10055 NZ_CP087677.1 GeneMarkS-2+ CDS 2418446 2419438 . - 0 ID=cds-WP_230428185.1;Parent=gene-LPH39_RS10055;Dbxref=Genbank:WP_230428185.1;Name=WP_230428185.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10055;product=hypothetical protein;protein_id=WP_230428185.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2419508 2419708 . - . ID=gene-LPH39_RS10060;Name=LPH39_RS10060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10060;old_locus_tag=LPH39_10060 NZ_CP087677.1 GeneMarkS-2+ CDS 2419508 2419708 . - 0 ID=cds-WP_230428186.1;Parent=gene-LPH39_RS10060;Dbxref=Genbank:WP_230428186.1;Name=WP_230428186.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10060;product=hypothetical protein;protein_id=WP_230428186.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2419780 2420529 . - . ID=gene-LPH39_RS10065;Name=LPH39_RS10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10065;old_locus_tag=LPH39_10065 NZ_CP087677.1 Protein Homology CDS 2419780 2420529 . - 0 ID=cds-WP_038271430.1;Parent=gene-LPH39_RS10065;Dbxref=Genbank:WP_038271430.1;Name=WP_038271430.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016448858.1;locus_tag=LPH39_RS10065;product=TatD family hydrolase;protein_id=WP_038271430.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2420543 2421907 . - . ID=gene-LPH39_RS10070;Name=LPH39_RS10070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10070;old_locus_tag=LPH39_10070 NZ_CP087677.1 Protein Homology CDS 2420543 2421907 . - 0 ID=cds-WP_038271431.1;Parent=gene-LPH39_RS10070;Dbxref=Genbank:WP_038271431.1;Name=WP_038271431.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005413106.1;locus_tag=LPH39_RS10070;product=hypothetical protein;protein_id=WP_038271431.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2421904 2422611 . - . ID=gene-LPH39_RS10075;Name=LPH39_RS10075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10075;old_locus_tag=LPH39_10075 NZ_CP087677.1 Protein Homology CDS 2421904 2422611 . - 0 ID=cds-WP_230428187.1;Parent=gene-LPH39_RS10075;Dbxref=Genbank:WP_230428187.1;Name=WP_230428187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005413105.1;locus_tag=LPH39_RS10075;product=hypothetical protein;protein_id=WP_230428187.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2422761 2424692 . - . ID=gene-LPH39_RS10080;Name=LPH39_RS10080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10080;old_locus_tag=LPH39_10080 NZ_CP087677.1 Protein Homology CDS 2422761 2424692 . - 0 ID=cds-WP_038271433.1;Parent=gene-LPH39_RS10080;Dbxref=Genbank:WP_038271433.1;Name=WP_038271433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005413104.1;locus_tag=LPH39_RS10080;product=P-loop NTPase fold protein;protein_id=WP_038271433.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2424981 2425130 . + . ID=gene-LPH39_RS10085;Name=LPH39_RS10085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10085;old_locus_tag=LPH39_10085 NZ_CP087677.1 Protein Homology CDS 2424981 2425130 . + 0 ID=cds-WP_230428188.1;Parent=gene-LPH39_RS10085;Dbxref=Genbank:WP_230428188.1;Name=WP_230428188.1;Ontology_term=GO:0009307,GO:0000287,GO:0003677,GO:0009036;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,DNA binding|0003677||IEA,type II site-specific deoxyribonuclease activity|0009036||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: protein motif:HMM:NF021112.2;locus_tag=LPH39_RS10085;product=XcyI family restriction endonuclease;protein_id=WP_230428188.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2425127 2425477 . + . ID=gene-LPH39_RS10090;Name=LPH39_RS10090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10090;old_locus_tag=LPH39_10090 NZ_CP087677.1 GeneMarkS-2+ CDS 2425127 2425477 . + 0 ID=cds-WP_038271434.1;Parent=gene-LPH39_RS10090;Dbxref=Genbank:WP_038271434.1;Name=WP_038271434.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10090;product=hypothetical protein;protein_id=WP_038271434.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2425525 2426421 . + . ID=gene-LPH39_RS10095;Name=LPH39_RS10095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10095;old_locus_tag=LPH39_10095 NZ_CP087677.1 Protein Homology CDS 2425525 2426421 . + 0 ID=cds-WP_038271455.1;Parent=gene-LPH39_RS10095;Dbxref=Genbank:WP_038271455.1;Name=WP_038271455.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382682.1;locus_tag=LPH39_RS10095;product=hypothetical protein;protein_id=WP_038271455.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2426745 2429654 . - . ID=gene-LPH39_RS10100;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;locus_tag=LPH39_RS10100;old_locus_tag=LPH39_10100 NZ_CP087677.1 Protein Homology CDS 2426745 2429654 . - 0 ID=cds-WP_230428279.1;Parent=gene-LPH39_RS10100;Dbxref=Genbank:WP_230428279.1;Name=WP_230428279.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887;gbkey=CDS;gene=uvrA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851525.1;locus_tag=LPH39_RS10100;product=excinuclease ABC subunit UvrA;protein_id=WP_230428279.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2429988 2430308 . + . ID=gene-LPH39_RS10105;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=LPH39_RS10105;old_locus_tag=LPH39_10105 NZ_CP087677.1 Protein Homology CDS 2429988 2430308 . + 0 ID=cds-WP_038271436.1;Parent=gene-LPH39_RS10105;Dbxref=Genbank:WP_038271436.1;Name=WP_038271436.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplU;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484328.1;locus_tag=LPH39_RS10105;product=50S ribosomal protein L21;protein_id=WP_038271436.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2430333 2430590 . + . ID=gene-LPH39_RS10110;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=LPH39_RS10110;old_locus_tag=LPH39_10110 NZ_CP087677.1 Protein Homology CDS 2430333 2430590 . + 0 ID=cds-WP_038271437.1;Parent=gene-LPH39_RS10110;Dbxref=Genbank:WP_038271437.1;Name=WP_038271437.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmA;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085949.1;locus_tag=LPH39_RS10110;product=50S ribosomal protein L27;protein_id=WP_038271437.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2430759 2431832 . + . ID=gene-LPH39_RS10115;Name=obgE;gbkey=Gene;gene=obgE;gene_biotype=protein_coding;locus_tag=LPH39_RS10115;old_locus_tag=LPH39_10115 NZ_CP087677.1 Protein Homology CDS 2430759 2431832 . + 0 ID=cds-WP_038271438.1;Parent=gene-LPH39_RS10115;Dbxref=Genbank:WP_038271438.1;Name=WP_038271438.1;Ontology_term=GO:0000287,GO:0003924,GO:0005525;gbkey=CDS;gene=obgE;go_function=magnesium ion binding|0000287||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017916359.1;locus_tag=LPH39_RS10115;product=GTPase ObgE;protein_id=WP_038271438.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2431946 2432215 . - . ID=gene-LPH39_RS10120;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=LPH39_RS10120;old_locus_tag=LPH39_10120 NZ_CP087677.1 Protein Homology CDS 2431946 2432215 . - 0 ID=cds-WP_038271456.1;Parent=gene-LPH39_RS10120;Dbxref=Genbank:WP_038271456.1;Name=WP_038271456.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsT;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019184515.1;locus_tag=LPH39_RS10120;product=30S ribosomal protein S20;protein_id=WP_038271456.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2432329 2433921 . + . ID=gene-LPH39_RS10125;Name=murJ;gbkey=Gene;gene=murJ;gene_biotype=protein_coding;locus_tag=LPH39_RS10125;old_locus_tag=LPH39_10125 NZ_CP087677.1 Protein Homology CDS 2432329 2433921 . + 0 ID=cds-WP_114867213.1;Parent=gene-LPH39_RS10125;Dbxref=Genbank:WP_114867213.1;Name=WP_114867213.1;Ontology_term=GO:0009252,GO:0034204;gbkey=CDS;gene=murJ;go_process=peptidoglycan biosynthetic process|0009252||IEA,lipid translocation|0034204||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158642.1;locus_tag=LPH39_RS10125;product=murein biosynthesis integral membrane protein MurJ;protein_id=WP_114867213.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2434077 2435024 . + . ID=gene-LPH39_RS10130;Name=LPH39_RS10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10130;old_locus_tag=LPH39_10130 NZ_CP087677.1 Protein Homology CDS 2434077 2435024 . + 0 ID=cds-WP_114867093.1;Parent=gene-LPH39_RS10130;Dbxref=Genbank:WP_114867093.1;Name=WP_114867093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085938.1;locus_tag=LPH39_RS10130;product=bifunctional riboflavin kinase/FAD synthetase;protein_id=WP_114867093.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2435021 2437852 . + . ID=gene-LPH39_RS10135;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=LPH39_RS10135;old_locus_tag=LPH39_10135 NZ_CP087677.1 Protein Homology CDS 2435021 2437852 . + 0 ID=cds-WP_038272864.1;Parent=gene-LPH39_RS10135;Dbxref=Genbank:WP_038272864.1;Name=WP_038272864.1;Ontology_term=GO:0006428,GO:0004822,GO:0005737;gbkey=CDS;gene=ileS;go_component=cytoplasm|0005737||IEA;go_function=isoleucine-tRNA ligase activity|0004822||IEA;go_process=isoleucyl-tRNA aminoacylation|0006428||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928804.1;locus_tag=LPH39_RS10135;product=isoleucine--tRNA ligase;protein_id=WP_038272864.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2438171 2438674 . + . ID=gene-LPH39_RS10140;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=LPH39_RS10140;old_locus_tag=LPH39_10140 NZ_CP087677.1 Protein Homology CDS 2438171 2438674 . + 0 ID=cds-WP_038272868.1;Parent=gene-LPH39_RS10140;Dbxref=Genbank:WP_038272868.1;Name=WP_038272868.1;Ontology_term=GO:0006508,GO:0009306,GO:0004190,GO:0005886;gbkey=CDS;gene=lspA;go_component=plasma membrane|0005886||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=proteolysis|0006508||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304369.1;locus_tag=LPH39_RS10140;product=signal peptidase II;protein_id=WP_038272868.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2438733 2439683 . + . ID=gene-LPH39_RS10145;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=LPH39_RS10145;old_locus_tag=LPH39_10145 NZ_CP087677.1 Protein Homology CDS 2438733 2439683 . + 0 ID=cds-WP_038272862.1;Parent=gene-LPH39_RS10145;Dbxref=Genbank:WP_038272862.1;Name=WP_038272862.1;Ontology_term=GO:0019288,GO:0050992,GO:0046872,GO:0051745;gbkey=CDS;gene=ispH;go_function=metal ion binding|0046872||IEA,4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity|0051745||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA,dimethylallyl diphosphate biosynthetic process|0050992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258401.1;locus_tag=LPH39_RS10145;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=WP_038272862.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2439885 2439960 . + . ID=gene-LPH39_RS10150;Name=LPH39_RS10150;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS10150;old_locus_tag=LPH39_10150 NZ_CP087677.1 tRNAscan-SE tRNA 2439885 2439960 . + . ID=rna-LPH39_RS10150;Parent=gene-LPH39_RS10150;anticodon=(pos:2439918..2439920);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS10150;product=tRNA-Thr NZ_CP087677.1 tRNAscan-SE exon 2439885 2439960 . + . ID=exon-LPH39_RS10150-1;Parent=rna-LPH39_RS10150;anticodon=(pos:2439918..2439920);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS10150;product=tRNA-Thr NZ_CP087677.1 RefSeq gene 2440546 2441502 . - . ID=gene-LPH39_RS10155;Name=LPH39_RS10155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10155;old_locus_tag=LPH39_10155 NZ_CP087677.1 Protein Homology CDS 2440546 2441502 . - 0 ID=cds-WP_038272860.1;Parent=gene-LPH39_RS10155;Dbxref=Genbank:WP_038272860.1;Name=WP_038272860.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012307.2;locus_tag=LPH39_RS10155;product=reverse transcriptase family protein;protein_id=WP_038272860.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2441456 2441731 . - . ID=gene-LPH39_RS10160;Name=LPH39_RS10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10160;old_locus_tag=LPH39_10160 NZ_CP087677.1 Protein Homology CDS 2441456 2441731 . - 0 ID=cds-WP_200866217.1;Parent=gene-LPH39_RS10160;Dbxref=Genbank:WP_200866217.1;Name=WP_200866217.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024252.2;locus_tag=LPH39_RS10160;product=helix-turn-helix transcriptional regulator;protein_id=WP_200866217.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2442649 2442954 . - . ID=gene-LPH39_RS10165;Name=LPH39_RS10165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10165;old_locus_tag=LPH39_10165 NZ_CP087677.1 GeneMarkS-2+ CDS 2442649 2442954 . - 0 ID=cds-WP_038272854.1;Parent=gene-LPH39_RS10165;Dbxref=Genbank:WP_038272854.1;Name=WP_038272854.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10165;product=hypothetical protein;protein_id=WP_038272854.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2443137 2443313 . + . ID=gene-LPH39_RS10170;Name=LPH39_RS10170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10170;old_locus_tag=LPH39_10170 NZ_CP087677.1 GeneMarkS-2+ CDS 2443137 2443313 . + 0 ID=cds-WP_160165227.1;Parent=gene-LPH39_RS10170;Dbxref=Genbank:WP_160165227.1;Name=WP_160165227.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10170;product=hypothetical protein;protein_id=WP_160165227.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2443543 2443761 . - . ID=gene-LPH39_RS10175;Name=LPH39_RS10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10175;old_locus_tag=LPH39_10175 NZ_CP087677.1 GeneMarkS-2+ CDS 2443543 2443761 . - 0 ID=cds-WP_038272853.1;Parent=gene-LPH39_RS10175;Dbxref=Genbank:WP_038272853.1;Name=WP_038272853.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10175;product=hypothetical protein;protein_id=WP_038272853.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2443872 2444102 . + . ID=gene-LPH39_RS10180;Name=LPH39_RS10180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10180;old_locus_tag=LPH39_10180 NZ_CP087677.1 GeneMarkS-2+ CDS 2443872 2444102 . + 0 ID=cds-WP_230431736.1;Parent=gene-LPH39_RS10180;Dbxref=Genbank:WP_230431736.1;Name=WP_230431736.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10180;product=hypothetical protein;protein_id=WP_230431736.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2444507 2444665 . + . ID=gene-LPH39_RS10185;Name=LPH39_RS10185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10185;old_locus_tag=LPH39_10185 NZ_CP087677.1 GeneMarkS-2+ CDS 2444507 2444665 . + 0 ID=cds-WP_230428190.1;Parent=gene-LPH39_RS10185;Dbxref=Genbank:WP_230428190.1;Name=WP_230428190.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10185;product=hypothetical protein;protein_id=WP_230428190.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2444772 2445185 . + . ID=gene-LPH39_RS10190;Name=LPH39_RS10190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10190;old_locus_tag=LPH39_10190 NZ_CP087677.1 Protein Homology CDS 2444772 2445185 . + 0 ID=cds-WP_051482383.1;Parent=gene-LPH39_RS10190;Dbxref=Genbank:WP_051482383.1;Name=WP_051482383.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: protein motif:HMM:NF016923.2;locus_tag=LPH39_RS10190;product=phage major capsid protein;protein_id=WP_051482383.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2445277 2445411 . + . ID=gene-LPH39_RS12070;Name=LPH39_RS12070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12070 NZ_CP087677.1 GeneMarkS-2+ CDS 2445277 2445411 . + 0 ID=cds-WP_267903176.1;Parent=gene-LPH39_RS12070;Dbxref=Genbank:WP_267903176.1;Name=WP_267903176.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12070;product=hypothetical protein;protein_id=WP_267903176.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2445499 2445678 . + . ID=gene-LPH39_RS10195;Name=LPH39_RS10195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10195;old_locus_tag=LPH39_10195 NZ_CP087677.1 GeneMarkS-2+ CDS 2445499 2445678 . + 0 ID=cds-WP_152536664.1;Parent=gene-LPH39_RS10195;Dbxref=Genbank:WP_152536664.1;Name=WP_152536664.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10195;product=hypothetical protein;protein_id=WP_152536664.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2445901 2446110 . - . ID=gene-LPH39_RS10200;Name=LPH39_RS10200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10200;old_locus_tag=LPH39_10200 NZ_CP087677.1 GeneMarkS-2+ CDS 2445901 2446110 . - 0 ID=cds-WP_230428192.1;Parent=gene-LPH39_RS10200;Dbxref=Genbank:WP_230428192.1;Name=WP_230428192.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10200;product=hypothetical protein;protein_id=WP_230428192.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2446162 2446335 . + . ID=gene-LPH39_RS10205;Name=LPH39_RS10205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10205;old_locus_tag=LPH39_10205 NZ_CP087677.1 GeneMarkS-2+ CDS 2446162 2446335 . + 0 ID=cds-WP_230428193.1;Parent=gene-LPH39_RS10205;Dbxref=Genbank:WP_230428193.1;Name=WP_230428193.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10205;product=hypothetical protein;protein_id=WP_230428193.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2446530 2446697 . - . ID=gene-LPH39_RS10210;Name=LPH39_RS10210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10210;old_locus_tag=LPH39_10210 NZ_CP087677.1 GeneMarkS-2+ CDS 2446530 2446697 . - 0 ID=cds-WP_171898049.1;Parent=gene-LPH39_RS10210;Dbxref=Genbank:WP_171898049.1;Name=WP_171898049.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10210;product=hypothetical protein;protein_id=WP_171898049.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2446733 2450260 . - . ID=gene-LPH39_RS10215;Name=LPH39_RS10215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10215;old_locus_tag=LPH39_10215 NZ_CP087677.1 Protein Homology CDS 2446733 2450260 . - 0 ID=cds-WP_038272843.1;Parent=gene-LPH39_RS10215;Dbxref=Genbank:WP_038272843.1;Name=WP_038272843.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088084.1;locus_tag=LPH39_RS10215;product=AAA domain-containing protein;protein_id=WP_038272843.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2450988 2458757 . - . ID=gene-LPH39_RS10220;Name=LPH39_RS10220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10220;old_locus_tag=LPH39_10220 NZ_CP087677.1 Protein Homology CDS 2450988 2458757 . - 0 ID=cds-WP_114867094.1;Parent=gene-LPH39_RS10220;Dbxref=Genbank:WP_114867094.1;Name=WP_114867094.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382677.1;locus_tag=LPH39_RS10220;product=bacteriocin;protein_id=WP_114867094.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2458757 2459380 . - . ID=gene-LPH39_RS10225;Name=LPH39_RS10225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10225;old_locus_tag=LPH39_10225 NZ_CP087677.1 Protein Homology CDS 2458757 2459380 . - 0 ID=cds-WP_038270281.1;Parent=gene-LPH39_RS10225;Dbxref=Genbank:WP_038270281.1;Name=WP_038270281.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098107.1;locus_tag=LPH39_RS10225;product=hypothetical protein;protein_id=WP_038270281.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2459377 2459655 . - . ID=gene-LPH39_RS10230;Name=LPH39_RS10230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10230;old_locus_tag=LPH39_10230 NZ_CP087677.1 Protein Homology CDS 2459377 2459655 . - 0 ID=cds-WP_038270278.1;Parent=gene-LPH39_RS10230;Dbxref=Genbank:WP_038270278.1;Name=WP_038270278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894851.1;locus_tag=LPH39_RS10230;product=hypothetical protein;protein_id=WP_038270278.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2459652 2460275 . - . ID=gene-LPH39_RS10235;Name=LPH39_RS10235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10235;old_locus_tag=LPH39_10235 NZ_CP087677.1 Protein Homology CDS 2459652 2460275 . - 0 ID=cds-WP_038270275.1;Parent=gene-LPH39_RS10235;Dbxref=Genbank:WP_038270275.1;Name=WP_038270275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098107.1;locus_tag=LPH39_RS10235;product=hypothetical protein;protein_id=WP_038270275.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2460272 2460550 . - . ID=gene-LPH39_RS10240;Name=LPH39_RS10240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10240;old_locus_tag=LPH39_10240 NZ_CP087677.1 Protein Homology CDS 2460272 2460550 . - 0 ID=cds-WP_038270272.1;Parent=gene-LPH39_RS10240;Dbxref=Genbank:WP_038270272.1;Name=WP_038270272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894851.1;locus_tag=LPH39_RS10240;product=hypothetical protein;protein_id=WP_038270272.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2460547 2461170 . - . ID=gene-LPH39_RS10245;Name=LPH39_RS10245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10245;old_locus_tag=LPH39_10245 NZ_CP087677.1 Protein Homology CDS 2460547 2461170 . - 0 ID=cds-WP_038270268.1;Parent=gene-LPH39_RS10245;Dbxref=Genbank:WP_038270268.1;Name=WP_038270268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098099.1;locus_tag=LPH39_RS10245;product=hypothetical protein;protein_id=WP_038270268.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2461167 2461445 . - . ID=gene-LPH39_RS10250;Name=LPH39_RS10250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10250;old_locus_tag=LPH39_10250 NZ_CP087677.1 Protein Homology CDS 2461167 2461445 . - 0 ID=cds-WP_038270265.1;Parent=gene-LPH39_RS10250;Dbxref=Genbank:WP_038270265.1;Name=WP_038270265.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894851.1;locus_tag=LPH39_RS10250;product=hypothetical protein;protein_id=WP_038270265.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2461442 2462065 . - . ID=gene-LPH39_RS10255;Name=LPH39_RS10255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10255;old_locus_tag=LPH39_10255 NZ_CP087677.1 Protein Homology CDS 2461442 2462065 . - 0 ID=cds-WP_038270262.1;Parent=gene-LPH39_RS10255;Dbxref=Genbank:WP_038270262.1;Name=WP_038270262.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098107.1;locus_tag=LPH39_RS10255;product=hypothetical protein;protein_id=WP_038270262.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2462062 2462340 . - . ID=gene-LPH39_RS10260;Name=LPH39_RS10260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10260;old_locus_tag=LPH39_10260 NZ_CP087677.1 Protein Homology CDS 2462062 2462340 . - 0 ID=cds-WP_051482245.1;Parent=gene-LPH39_RS10260;Dbxref=Genbank:WP_051482245.1;Name=WP_051482245.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098106.1;locus_tag=LPH39_RS10260;product=hypothetical protein;protein_id=WP_051482245.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2462334 2463068 . - . ID=gene-LPH39_RS10265;Name=LPH39_RS10265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10265;old_locus_tag=LPH39_10265 NZ_CP087677.1 Protein Homology CDS 2462334 2463068 . - 0 ID=cds-WP_230428194.1;Parent=gene-LPH39_RS10265;Dbxref=Genbank:WP_230428194.1;Name=WP_230428194.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098107.1;locus_tag=LPH39_RS10265;product=hypothetical protein;protein_id=WP_230428194.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2463215 2463724 . - . ID=gene-LPH39_RS10270;Name=LPH39_RS10270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10270;old_locus_tag=LPH39_10270 NZ_CP087677.1 Protein Homology CDS 2463215 2463724 . - 0 ID=cds-WP_038270259.1;Parent=gene-LPH39_RS10270;Dbxref=Genbank:WP_038270259.1;Name=WP_038270259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087886.1;locus_tag=LPH39_RS10270;product=hypothetical protein;protein_id=WP_038270259.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2464286 2464531 . - . ID=gene-LPH39_RS10275;Name=LPH39_RS10275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10275;old_locus_tag=LPH39_10275 NZ_CP087677.1 GeneMarkS-2+ CDS 2464286 2464531 . - 0 ID=cds-WP_152536569.1;Parent=gene-LPH39_RS10275;Dbxref=Genbank:WP_152536569.1;Name=WP_152536569.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10275;product=hypothetical protein;protein_id=WP_152536569.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2464649 2466070 . - . ID=gene-LPH39_RS10280;Name=LPH39_RS10280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10280;old_locus_tag=LPH39_10280 NZ_CP087677.1 Protein Homology CDS 2464649 2466070 . - 0 ID=cds-WP_038270256.1;Parent=gene-LPH39_RS10280;Dbxref=Genbank:WP_038270256.1;Name=WP_038270256.1;Ontology_term=GO:0030253;gbkey=CDS;go_process=protein secretion by the type I secretion system|0030253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920693.1;locus_tag=LPH39_RS10280;product=HlyD family type I secretion periplasmic adaptor subunit;protein_id=WP_038270256.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2466067 2468229 . - . ID=gene-LPH39_RS10285;Name=LPH39_RS10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10285;old_locus_tag=LPH39_10285 NZ_CP087677.1 Protein Homology CDS 2466067 2468229 . - 0 ID=cds-WP_038270253.1;Parent=gene-LPH39_RS10285;Dbxref=Genbank:WP_038270253.1;Name=WP_038270253.1;Ontology_term=GO:0030253;gbkey=CDS;go_process=protein secretion by the type I secretion system|0030253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607380.1;locus_tag=LPH39_RS10285;product=type I secretion system permease/ATPase;protein_id=WP_038270253.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2468618 2469892 . + . ID=gene-LPH39_RS10290;Name=LPH39_RS10290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10290;old_locus_tag=LPH39_10290 NZ_CP087677.1 Protein Homology CDS 2468618 2469892 . + 0 ID=cds-WP_038270250.1;Parent=gene-LPH39_RS10290;Dbxref=Genbank:WP_038270250.1;Name=WP_038270250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851306.1;locus_tag=LPH39_RS10290;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_038270250.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2470513 2471256 . - . ID=gene-LPH39_RS10295;Name=LPH39_RS10295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10295;old_locus_tag=LPH39_10295 NZ_CP087677.1 Protein Homology CDS 2470513 2471256 . - 0 ID=cds-WP_230428280.1;Parent=gene-LPH39_RS10295;Dbxref=Genbank:WP_230428280.1;Name=WP_230428280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993124.1;locus_tag=LPH39_RS10295;product=polysaccharide deacetylase family protein;protein_id=WP_230428280.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2471356 2472282 . + . ID=gene-LPH39_RS10300;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=LPH39_RS10300;old_locus_tag=LPH39_10300 NZ_CP087677.1 Protein Homology CDS 2471356 2472282 . + 0 ID=cds-WP_038270326.1;Parent=gene-LPH39_RS10300;Dbxref=Genbank:WP_038270326.1;Name=WP_038270326.1;Ontology_term=GO:0009055;gbkey=CDS;gene=grxD;go_function=electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913558.1;locus_tag=LPH39_RS10300;product=Grx4 family monothiol glutaredoxin;protein_id=WP_038270326.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2472830 2474365 . - . ID=gene-LPH39_RS10305;Name=LPH39_RS10305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10305;old_locus_tag=LPH39_10305 NZ_CP087677.1 Protein Homology CDS 2472830 2474365 . - 0 ID=cds-WP_038270246.1;Parent=gene-LPH39_RS10305;Dbxref=Genbank:WP_038270246.1;Name=WP_038270246.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303782.1;locus_tag=LPH39_RS10305;product=S53 family peptidase;protein_id=WP_038270246.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2474924 2475799 . - . ID=gene-LPH39_RS10310;Name=LPH39_RS10310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10310;old_locus_tag=LPH39_10310 NZ_CP087677.1 Protein Homology CDS 2474924 2475799 . - 0 ID=cds-WP_038270243.1;Parent=gene-LPH39_RS10310;Dbxref=Genbank:WP_038270243.1;Name=WP_038270243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004543218.1;locus_tag=LPH39_RS10310;product=LysR family transcriptional regulator;protein_id=WP_038270243.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2475902 2476783 . + . ID=gene-LPH39_RS10315;Name=LPH39_RS10315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10315;old_locus_tag=LPH39_10315 NZ_CP087677.1 Protein Homology CDS 2475902 2476783 . + 0 ID=cds-WP_038270240.1;Parent=gene-LPH39_RS10315;Dbxref=Genbank:WP_038270240.1;Name=WP_038270240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014403947.1;locus_tag=LPH39_RS10315;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_038270240.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2476846 2477919 . + . ID=gene-LPH39_RS10320;Name=LPH39_RS10320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10320;old_locus_tag=LPH39_10320 NZ_CP087677.1 Protein Homology CDS 2476846 2477919 . + 0 ID=cds-WP_038270238.1;Parent=gene-LPH39_RS10320;Dbxref=Genbank:WP_038270238.1;Name=WP_038270238.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014403948.1;locus_tag=LPH39_RS10320;product=alkene reductase;protein_id=WP_038270238.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2477930 2478667 . + . ID=gene-LPH39_RS10325;Name=LPH39_RS10325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10325;old_locus_tag=LPH39_10325 NZ_CP087677.1 Protein Homology CDS 2477930 2478667 . + 0 ID=cds-WP_038270235.1;Parent=gene-LPH39_RS10325;Dbxref=Genbank:WP_038270235.1;Name=WP_038270235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014403949.1;locus_tag=LPH39_RS10325;product=pirin family protein;protein_id=WP_038270235.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2478687 2479250 . + . ID=gene-LPH39_RS10330;Name=LPH39_RS10330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10330;old_locus_tag=LPH39_10330 NZ_CP087677.1 Protein Homology CDS 2478687 2479250 . + 0 ID=cds-WP_200866178.1;Parent=gene-LPH39_RS10330;Dbxref=Genbank:WP_200866178.1;Name=WP_200866178.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013053.2;locus_tag=LPH39_RS10330;product=isochorismatase family protein;protein_id=WP_200866178.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2479528 2479941 . - . ID=gene-LPH39_RS10335;Name=LPH39_RS10335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10335;old_locus_tag=LPH39_10335 NZ_CP087677.1 GeneMarkS-2+ CDS 2479528 2479941 . - 0 ID=cds-WP_038270232.1;Parent=gene-LPH39_RS10335;Dbxref=Genbank:WP_038270232.1;Name=WP_038270232.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10335;product=hypothetical protein;protein_id=WP_038270232.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2480089 2481138 . + . ID=gene-LPH39_RS10340;Name=LPH39_RS10340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10340;old_locus_tag=LPH39_10340 NZ_CP087677.1 Protein Homology CDS 2480089 2481138 . + 0 ID=cds-WP_038270222.1;Parent=gene-LPH39_RS10340;Dbxref=Genbank:WP_038270222.1;Name=WP_038270222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851301.1;locus_tag=LPH39_RS10340;product=NAD(P)-dependent alcohol dehydrogenase;protein_id=WP_038270222.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2481231 2482196 . + . ID=gene-LPH39_RS10345;Name=LPH39_RS10345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10345;old_locus_tag=LPH39_10345 NZ_CP087677.1 Protein Homology CDS 2481231 2482196 . + 0 ID=cds-WP_038270221.1;Parent=gene-LPH39_RS10345;Dbxref=Genbank:WP_038270221.1;Name=WP_038270221.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014402676.1;locus_tag=LPH39_RS10345;product=NADP-dependent oxidoreductase;protein_id=WP_038270221.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2482217 2482387 . + . ID=gene-LPH39_RS10350;Name=LPH39_RS10350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10350;old_locus_tag=LPH39_10350 NZ_CP087677.1 GeneMarkS-2+ CDS 2482217 2482387 . + 0 ID=cds-WP_160165118.1;Parent=gene-LPH39_RS10350;Dbxref=Genbank:WP_160165118.1;Name=WP_160165118.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10350;product=hypothetical protein;protein_id=WP_160165118.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2483154 2483420 . + . ID=gene-LPH39_RS10355;Name=LPH39_RS10355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10355;old_locus_tag=LPH39_10355 NZ_CP087677.1 GeneMarkS-2+ CDS 2483154 2483420 . + 0 ID=cds-WP_152536567.1;Parent=gene-LPH39_RS10355;Dbxref=Genbank:WP_152536567.1;Name=WP_152536567.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10355;product=hypothetical protein;protein_id=WP_152536567.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2483675 2484226 . + . ID=gene-LPH39_RS10360;Name=LPH39_RS10360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10360;old_locus_tag=LPH39_10360 NZ_CP087677.1 Protein Homology CDS 2483675 2484226 . + 0 ID=cds-WP_230428197.1;Parent=gene-LPH39_RS10360;Dbxref=Genbank:WP_230428197.1;Name=WP_230428197.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090977.1;locus_tag=LPH39_RS10360;product=hypothetical protein;protein_id=WP_230428197.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2484393 2487497 . - . ID=gene-LPH39_RS10365;Name=LPH39_RS10365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10365;old_locus_tag=LPH39_10365 NZ_CP087677.1 Protein Homology CDS 2484393 2487497 . - 0 ID=cds-WP_038270212.1;Parent=gene-LPH39_RS10365;Dbxref=Genbank:WP_038270212.1;Name=WP_038270212.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852089.1;locus_tag=LPH39_RS10365;product=efflux RND transporter permease subunit;protein_id=WP_038270212.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2487586 2490813 . - . ID=gene-LPH39_RS10370;Name=LPH39_RS10370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10370;old_locus_tag=LPH39_10370 NZ_CP087677.1 Protein Homology CDS 2487586 2490813 . - 0 ID=cds-WP_038270209.1;Parent=gene-LPH39_RS10370;Dbxref=Genbank:WP_038270209.1;Name=WP_038270209.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852090.1;locus_tag=LPH39_RS10370;product=efflux RND transporter permease subunit;protein_id=WP_038270209.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2490881 2492119 . - . ID=gene-LPH39_RS10375;Name=LPH39_RS10375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10375;old_locus_tag=LPH39_10375 NZ_CP087677.1 Protein Homology CDS 2490881 2492119 . - 0 ID=cds-WP_038270206.1;Parent=gene-LPH39_RS10375;Dbxref=Genbank:WP_038270206.1;Name=WP_038270206.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849343.1;locus_tag=LPH39_RS10375;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_038270206.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2492304 2493119 . + . ID=gene-LPH39_RS10380;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=LPH39_RS10380;old_locus_tag=LPH39_10380 NZ_CP087677.1 Protein Homology CDS 2492304 2493119 . + 0 ID=cds-WP_038270204.1;Parent=gene-LPH39_RS10380;Dbxref=Genbank:WP_038270204.1;Name=WP_038270204.1;Note=Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;Ontology_term=GO:0008616,GO:0033739,GO:0043867;gbkey=CDS;gene=queF;go_function=preQ1 synthase activity|0033739||IEA,7-cyano-7-deazaguanine tRNA-ribosyltransferase activity|0043867||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171998.1;locus_tag=LPH39_RS10380;product=NADPH-dependent 7-cyano-7-deazaguanine reductase QueF;protein_id=WP_038270204.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2493799 2493921 . + . ID=gene-LPH39_RS12075;Name=LPH39_RS12075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS12075 NZ_CP087677.1 GeneMarkS-2+ CDS 2493799 2493921 . + 0 ID=cds-WP_267903177.1;Parent=gene-LPH39_RS12075;Dbxref=Genbank:WP_267903177.1;Name=WP_267903177.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS12075;product=hypothetical protein;protein_id=WP_267903177.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2494127 2494432 . - . ID=gene-LPH39_RS10385;Name=LPH39_RS10385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10385;old_locus_tag=LPH39_10385 NZ_CP087677.1 Protein Homology CDS 2494127 2494432 . - 0 ID=cds-WP_038270202.1;Parent=gene-LPH39_RS10385;Dbxref=Genbank:WP_038270202.1;Name=WP_038270202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090997.1;locus_tag=LPH39_RS10385;product=hypothetical protein;protein_id=WP_038270202.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2494429 2494755 . - . ID=gene-LPH39_RS10390;Name=LPH39_RS10390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10390;old_locus_tag=LPH39_10390 NZ_CP087677.1 GeneMarkS-2+ CDS 2494429 2494755 . - 0 ID=cds-WP_152536564.1;Parent=gene-LPH39_RS10390;Dbxref=Genbank:WP_152536564.1;Name=WP_152536564.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10390;product=hypothetical protein;protein_id=WP_152536564.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2496805 2498232 . + . ID=gene-LPH39_RS10395;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=LPH39_RS10395;old_locus_tag=LPH39_10395 NZ_CP087677.1 Protein Homology CDS 2496805 2498232 . + 0 ID=cds-WP_038270200.1;Parent=gene-LPH39_RS10395;Dbxref=Genbank:WP_038270200.1;Name=WP_038270200.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuC;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015277365.1;locus_tag=LPH39_RS10395;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_038270200.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2498535 2499182 . + . ID=gene-LPH39_RS10400;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=LPH39_RS10400;old_locus_tag=LPH39_10400 NZ_CP087677.1 Protein Homology CDS 2498535 2499182 . + 0 ID=cds-WP_038270325.1;Parent=gene-LPH39_RS10400;Dbxref=Genbank:WP_038270325.1;Name=WP_038270325.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuD;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301096.1;locus_tag=LPH39_RS10400;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_038270325.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2499792 2500865 . + . ID=gene-LPH39_RS10405;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;locus_tag=LPH39_RS10405;old_locus_tag=LPH39_10405 NZ_CP087677.1 Protein Homology CDS 2499792 2500865 . + 0 ID=cds-WP_038270194.1;Parent=gene-LPH39_RS10405;Dbxref=Genbank:WP_038270194.1;Name=WP_038270194.1;Ontology_term=GO:0009098,GO:0003862;gbkey=CDS;gene=leuB;go_function=3-isopropylmalate dehydrogenase activity|0003862||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912018.1;locus_tag=LPH39_RS10405;product=3-isopropylmalate dehydrogenase;protein_id=WP_038270194.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2501592 2502290 . + . ID=gene-LPH39_RS10410;Name=LPH39_RS10410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10410;old_locus_tag=LPH39_10410 NZ_CP087677.1 Protein Homology CDS 2501592 2502290 . + 0 ID=cds-WP_038270191.1;Parent=gene-LPH39_RS10410;Dbxref=Genbank:WP_038270191.1;Name=WP_038270191.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085793.1;locus_tag=LPH39_RS10410;product=polysaccharide export protein;protein_id=WP_038270191.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2502272 2503672 . + . ID=gene-LPH39_RS10415;Name=LPH39_RS10415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10415;old_locus_tag=LPH39_10415 NZ_CP087677.1 Protein Homology CDS 2502272 2503672 . + 0 ID=cds-WP_171898076.1;Parent=gene-LPH39_RS10415;Dbxref=Genbank:WP_171898076.1;Name=WP_171898076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157116.1;locus_tag=LPH39_RS10415;product=Wzz/FepE/Etk N-terminal domain-containing protein;protein_id=WP_171898076.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2503906 2505360 . + . ID=gene-LPH39_RS10420;Name=LPH39_RS10420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10420;old_locus_tag=LPH39_10420 NZ_CP087677.1 Protein Homology CDS 2503906 2505360 . + 0 ID=cds-WP_038270186.1;Parent=gene-LPH39_RS10420;Dbxref=Genbank:WP_038270186.1;Name=WP_038270186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914017.1;locus_tag=LPH39_RS10420;product=undecaprenyl-phosphate glucose phosphotransferase;protein_id=WP_038270186.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2505418 2506680 . + . ID=gene-LPH39_RS10425;Name=LPH39_RS10425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10425;old_locus_tag=LPH39_10425 NZ_CP087677.1 Protein Homology CDS 2505418 2506680 . + 0 ID=cds-WP_171898077.1;Parent=gene-LPH39_RS10425;Dbxref=Genbank:WP_171898077.1;Name=WP_171898077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117349.1;locus_tag=LPH39_RS10425;product=polysaccharide biosynthesis protein GumE;protein_id=WP_171898077.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2506677 2507762 . + . ID=gene-LPH39_RS10430;Name=LPH39_RS10430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10430;old_locus_tag=LPH39_10430 NZ_CP087677.1 Protein Homology CDS 2506677 2507762 . + 0 ID=cds-WP_230428198.1;Parent=gene-LPH39_RS10430;Dbxref=Genbank:WP_230428198.1;Name=WP_230428198.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098087.1;locus_tag=LPH39_RS10430;product=acyltransferase family protein;protein_id=WP_230428198.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2508209 2509351 . + . ID=gene-LPH39_RS10435;Name=LPH39_RS10435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10435;old_locus_tag=LPH39_10435 NZ_CP087677.1 Protein Homology CDS 2508209 2509351 . + 0 ID=cds-WP_038270324.1;Parent=gene-LPH39_RS10435;Dbxref=Genbank:WP_038270324.1;Name=WP_038270324.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851288.1;locus_tag=LPH39_RS10435;product=glycosyltransferase family 4 protein;protein_id=WP_038270324.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2509591 2509962 . + . ID=gene-LPH39_RS10440;Name=LPH39_RS10440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10440;old_locus_tag=LPH39_10440 NZ_CP087677.1 GeneMarkS-2+ CDS 2509591 2509962 . + 0 ID=cds-WP_162814090.1;Parent=gene-LPH39_RS10440;Dbxref=Genbank:WP_162814090.1;Name=WP_162814090.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10440;product=hypothetical protein;protein_id=WP_162814090.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2509959 2511491 . + . ID=gene-LPH39_RS10445;Name=LPH39_RS10445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10445;old_locus_tag=LPH39_10445 NZ_CP087677.1 Protein Homology CDS 2509959 2511491 . + 0 ID=cds-WP_038270183.1;Parent=gene-LPH39_RS10445;Dbxref=Genbank:WP_038270183.1;Name=WP_038270183.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851287.1;locus_tag=LPH39_RS10445;product=lipopolysaccharide biosynthesis protein;protein_id=WP_038270183.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2511611 2512744 . + . ID=gene-LPH39_RS10450;Name=LPH39_RS10450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10450;old_locus_tag=LPH39_10450 NZ_CP087677.1 Protein Homology CDS 2511611 2512744 . + 0 ID=cds-WP_038270322.1;Parent=gene-LPH39_RS10450;Dbxref=Genbank:WP_038270322.1;Name=WP_038270322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098085.1;locus_tag=LPH39_RS10450;product=glycosyltransferase;protein_id=WP_038270322.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2513608 2514378 . + . ID=gene-LPH39_RS10455;Name=LPH39_RS10455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10455;old_locus_tag=LPH39_10455 NZ_CP087677.1 Protein Homology CDS 2513608 2514378 . + 0 ID=cds-WP_051482240.1;Parent=gene-LPH39_RS10455;Dbxref=Genbank:WP_051482240.1;Name=WP_051482240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851285.1;locus_tag=LPH39_RS10455;product=WecB/TagA/CpsF family glycosyltransferase;protein_id=WP_051482240.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2514604 2515323 . - . ID=gene-LPH39_RS10460;Name=LPH39_RS10460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10460;old_locus_tag=LPH39_10460 NZ_CP087677.1 Protein Homology CDS 2514604 2515323 . - 0 ID=cds-WP_038270180.1;Parent=gene-LPH39_RS10460;Dbxref=Genbank:WP_038270180.1;Name=WP_038270180.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851284.1;locus_tag=LPH39_RS10460;product=response regulator;protein_id=WP_038270180.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2515514 2516845 . + . ID=gene-LPH39_RS10465;Name=rlmD;gbkey=Gene;gene=rlmD;gene_biotype=protein_coding;locus_tag=LPH39_RS10465;old_locus_tag=LPH39_10465 NZ_CP087677.1 Protein Homology CDS 2515514 2516845 . + 0 ID=cds-WP_038270321.1;Parent=gene-LPH39_RS10465;Dbxref=Genbank:WP_038270321.1;Name=WP_038270321.1;Ontology_term=GO:0006396,GO:0008173;gbkey=CDS;gene=rlmD;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337972.1;locus_tag=LPH39_RS10465;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=WP_038270321.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2516908 2517405 . + . ID=gene-LPH39_RS10470;Name=LPH39_RS10470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10470;old_locus_tag=LPH39_10470 NZ_CP087677.1 Protein Homology CDS 2516908 2517405 . + 0 ID=cds-WP_038270320.1;Parent=gene-LPH39_RS10470;Dbxref=Genbank:WP_038270320.1;Name=WP_038270320.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851283.1;locus_tag=LPH39_RS10470;product=CYTH domain-containing protein;protein_id=WP_038270320.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2517692 2518699 . + . ID=gene-LPH39_RS10475;Name=nagZ;gbkey=Gene;gene=nagZ;gene_biotype=protein_coding;locus_tag=LPH39_RS10475;old_locus_tag=LPH39_10475 NZ_CP087677.1 Protein Homology CDS 2517692 2518699 . + 0 ID=cds-WP_038270178.1;Parent=gene-LPH39_RS10475;Dbxref=Genbank:WP_038270178.1;Name=WP_038270178.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=nagZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851282.1;locus_tag=LPH39_RS10475;product=beta-N-acetylhexosaminidase;protein_id=WP_038270178.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2518699 2519253 . + . ID=gene-LPH39_RS10480;Name=LPH39_RS10480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10480;old_locus_tag=LPH39_10480 NZ_CP087677.1 Protein Homology CDS 2518699 2519253 . + 0 ID=cds-WP_038270175.1;Parent=gene-LPH39_RS10480;Dbxref=Genbank:WP_038270175.1;Name=WP_038270175.1;Ontology_term=GO:0009116;gbkey=CDS;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449878.1;locus_tag=LPH39_RS10480;product=hypoxanthine-guanine phosphoribosyltransferase;protein_id=WP_038270175.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2519261 2520013 . + . ID=gene-LPH39_RS10485;Name=LPH39_RS10485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10485;old_locus_tag=LPH39_10485 NZ_CP087677.1 Protein Homology CDS 2519261 2520013 . + 0 ID=cds-WP_114867214.1;Parent=gene-LPH39_RS10485;Dbxref=Genbank:WP_114867214.1;Name=WP_114867214.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408258.1;locus_tag=LPH39_RS10485;product=S-methyl-5'-thioinosine phosphorylase;protein_id=WP_114867214.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2520102 2520305 . + . ID=gene-LPH39_RS10490;Name=LPH39_RS10490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10490;old_locus_tag=LPH39_10490 NZ_CP087677.1 Protein Homology CDS 2520102 2520305 . + 0 ID=cds-WP_038270170.1;Parent=gene-LPH39_RS10490;Dbxref=Genbank:WP_038270170.1;Name=WP_038270170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003419650.1;locus_tag=LPH39_RS10490;product=cold-shock protein;protein_id=WP_038270170.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2521799 2524318 . + . ID=gene-LPH39_RS10495;Name=LPH39_RS10495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10495;old_locus_tag=LPH39_10495 NZ_CP087677.1 Protein Homology CDS 2521799 2524318 . + 0 ID=cds-WP_230428199.1;Parent=gene-LPH39_RS10495;Dbxref=Genbank:WP_230428199.1;Name=WP_230428199.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894795.1;locus_tag=LPH39_RS10495;product=autotransporter domain-containing protein;protein_id=WP_230428199.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2524535 2525038 . - . ID=gene-LPH39_RS10500;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=LPH39_RS10500;old_locus_tag=LPH39_10500 NZ_CP087677.1 Protein Homology CDS 2524535 2525038 . - 0 ID=cds-WP_038270168.1;Parent=gene-LPH39_RS10500;Dbxref=Genbank:WP_038270168.1;Name=WP_038270168.1;Ontology_term=GO:0003723;gbkey=CDS;gene=smpB;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050971.1;locus_tag=LPH39_RS10500;product=SsrA-binding protein SmpB;protein_id=WP_038270168.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2525102 2525539 . + . ID=gene-LPH39_RS10505;Name=LPH39_RS10505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10505;old_locus_tag=LPH39_10505 NZ_CP087677.1 Protein Homology CDS 2525102 2525539 . + 0 ID=cds-WP_038270167.1;Parent=gene-LPH39_RS10505;Dbxref=Genbank:WP_038270167.1;Name=WP_038270167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894793.1;locus_tag=LPH39_RS10505;product=type II toxin-antitoxin system RatA family toxin;protein_id=WP_038270167.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2525536 2525790 . + . ID=gene-LPH39_RS10510;Name=LPH39_RS10510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10510;old_locus_tag=LPH39_10510 NZ_CP087677.1 Protein Homology CDS 2525536 2525790 . + 0 ID=cds-WP_038270165.1;Parent=gene-LPH39_RS10510;Dbxref=Genbank:WP_038270165.1;Name=WP_038270165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089800.1;locus_tag=LPH39_RS10510;product=RnfH family protein;protein_id=WP_038270165.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2525819 2526211 . - . ID=gene-LPH39_RS10515;Name=LPH39_RS10515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10515;old_locus_tag=LPH39_10515 NZ_CP087677.1 Protein Homology CDS 2525819 2526211 . - 0 ID=cds-WP_038270157.1;Parent=gene-LPH39_RS10515;Dbxref=Genbank:WP_038270157.1;Name=WP_038270157.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085841.1;locus_tag=LPH39_RS10515;product=outer membrane protein assembly factor BamE;protein_id=WP_038270157.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2526324 2526734 . + . ID=gene-LPH39_RS10520;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=LPH39_RS10520;old_locus_tag=LPH39_10520 NZ_CP087677.1 Protein Homology CDS 2526324 2526734 . + 0 ID=cds-WP_038270156.1;Parent=gene-LPH39_RS10520;Dbxref=Genbank:WP_038270156.1;Name=WP_038270156.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=fur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804358.1;locus_tag=LPH39_RS10520;product=ferric iron uptake transcriptional regulator;protein_id=WP_038270156.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2526870 2528543 . - . ID=gene-LPH39_RS10525;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=LPH39_RS10525;old_locus_tag=LPH39_10525 NZ_CP087677.1 Protein Homology CDS 2526870 2528543 . - 0 ID=cds-WP_038270155.1;Parent=gene-LPH39_RS10525;Dbxref=Genbank:WP_038270155.1;Name=WP_038270155.1;Ontology_term=GO:0006281,GO:0006310,GO:0005524;gbkey=CDS;gene=recN;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894789.1;locus_tag=LPH39_RS10525;product=DNA repair protein RecN;protein_id=WP_038270155.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2528662 2529711 . + . ID=gene-LPH39_RS10530;Name=hrcA;gbkey=Gene;gene=hrcA;gene_biotype=protein_coding;locus_tag=LPH39_RS10530;old_locus_tag=LPH39_10530 NZ_CP087677.1 Protein Homology CDS 2528662 2529711 . + 0 ID=cds-WP_038270316.1;Parent=gene-LPH39_RS10530;Dbxref=Genbank:WP_038270316.1;Name=WP_038270316.1;Ontology_term=GO:0009408,GO:0005737;gbkey=CDS;gene=hrcA;go_component=cytoplasm|0005737||IEA;go_process=response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237768.1;locus_tag=LPH39_RS10530;product=heat-inducible transcriptional repressor HrcA;protein_id=WP_038270316.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2529832 2530350 . + . ID=gene-LPH39_RS10535;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=LPH39_RS10535;old_locus_tag=LPH39_10535 NZ_CP087677.1 Protein Homology CDS 2529832 2530350 . + 0 ID=cds-WP_038270153.1;Parent=gene-LPH39_RS10535;Dbxref=Genbank:WP_038270153.1;Name=WP_038270153.1;gbkey=CDS;gene=grpE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483633.1;locus_tag=LPH39_RS10535;product=nucleotide exchange factor GrpE;protein_id=WP_038270153.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2530482 2532395 . + . ID=gene-LPH39_RS10540;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=LPH39_RS10540;old_locus_tag=LPH39_10540 NZ_CP087677.1 Protein Homology CDS 2530482 2532395 . + 0 ID=cds-WP_038270151.1;Parent=gene-LPH39_RS10540;Dbxref=Genbank:WP_038270151.1;Name=WP_038270151.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887;gbkey=CDS;gene=dnaK;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380232.1;locus_tag=LPH39_RS10540;product=molecular chaperone DnaK;protein_id=WP_038270151.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2532531 2533643 . + . ID=gene-LPH39_RS10545;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;locus_tag=LPH39_RS10545;old_locus_tag=LPH39_10545 NZ_CP087677.1 Protein Homology CDS 2532531 2533643 . + 0 ID=cds-WP_114867099.1;Parent=gene-LPH39_RS10545;Dbxref=Genbank:WP_114867099.1;Name=WP_114867099.1;Ontology_term=GO:0006457,GO:0009408,GO:0005515;gbkey=CDS;gene=dnaJ;go_function=protein binding|0005515||IEA;go_process=protein folding|0006457||IEA,response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438731.1;locus_tag=LPH39_RS10545;product=molecular chaperone DnaJ;protein_id=WP_114867099.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2533948 2535069 . + . ID=gene-LPH39_RS10550;Name=LPH39_RS10550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10550;old_locus_tag=LPH39_10550 NZ_CP087677.1 Protein Homology CDS 2533948 2535069 . + 0 ID=cds-WP_038270314.1;Parent=gene-LPH39_RS10550;Dbxref=Genbank:WP_038270314.1;Name=WP_038270314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098075.1;locus_tag=LPH39_RS10550;product=prephenate dehydrogenase;protein_id=WP_038270314.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2536427 2537140 . + . ID=gene-LPH39_RS10555;Name=LPH39_RS10555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10555;old_locus_tag=LPH39_10555 NZ_CP087677.1 Protein Homology CDS 2536427 2537140 . + 0 ID=cds-WP_038270312.1;Parent=gene-LPH39_RS10555;Dbxref=Genbank:WP_038270312.1;Name=WP_038270312.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019661106.1;locus_tag=LPH39_RS10555;product=response regulator transcription factor;protein_id=WP_038270312.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2537449 2537829 . + . ID=gene-LPH39_RS10560;Name=LPH39_RS10560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10560;old_locus_tag=LPH39_10560 NZ_CP087677.1 Protein Homology CDS 2537449 2537829 . + 0 ID=cds-WP_038270150.1;Parent=gene-LPH39_RS10560;Dbxref=Genbank:WP_038270150.1;Name=WP_038270150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811893.1;locus_tag=LPH39_RS10560;product=diacylglycerol kinase;protein_id=WP_038270150.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2537916 2538821 . + . ID=gene-LPH39_RS10565;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=LPH39_RS10565;old_locus_tag=LPH39_10565 NZ_CP087677.1 Protein Homology CDS 2537916 2538821 . + 0 ID=cds-WP_038270310.1;Parent=gene-LPH39_RS10565;Dbxref=Genbank:WP_038270310.1;Name=WP_038270310.1;Ontology_term=GO:0009249,GO:0008961,GO:0016020;gbkey=CDS;gene=lgt;go_component=membrane|0016020||IEA;go_function=phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity|0008961||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085861.1;locus_tag=LPH39_RS10565;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_038270310.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2538818 2539612 . + . ID=gene-LPH39_RS10570;Name=LPH39_RS10570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10570;old_locus_tag=LPH39_10570 NZ_CP087677.1 Protein Homology CDS 2538818 2539612 . + 0 ID=cds-WP_038270148.1;Parent=gene-LPH39_RS10570;Dbxref=Genbank:WP_038270148.1;Name=WP_038270148.1;Ontology_term=GO:0006231,GO:0004799;gbkey=CDS;go_function=thymidylate synthase activity|0004799||IEA;go_process=dTMP biosynthetic process|0006231||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260172.1;locus_tag=LPH39_RS10570;product=thymidylate synthase;protein_id=WP_038270148.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2539935 2540435 . + . ID=gene-LPH39_RS10575;Name=LPH39_RS10575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10575;old_locus_tag=LPH39_10575 NZ_CP087677.1 Protein Homology CDS 2539935 2540435 . + 0 ID=cds-WP_038270308.1;Parent=gene-LPH39_RS10575;Dbxref=Genbank:WP_038270308.1;Name=WP_038270308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018974382.1;locus_tag=LPH39_RS10575;product=dihydrofolate reductase;protein_id=WP_038270308.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2540816 2541151 . - . ID=gene-LPH39_RS10580;Name=LPH39_RS10580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10580;old_locus_tag=LPH39_10580 NZ_CP087677.1 Protein Homology CDS 2540816 2541151 . - 0 ID=cds-WP_230428281.1;Parent=gene-LPH39_RS10580;Dbxref=Genbank:WP_230428281.1;Name=WP_230428281.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013676.2;locus_tag=LPH39_RS10580;product=Tn3 family transposase;protein_id=WP_230428281.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2541270 2541458 . - . ID=gene-LPH39_RS10585;Name=LPH39_RS10585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10585;old_locus_tag=LPH39_10585 NZ_CP087677.1 Protein Homology CDS 2541270 2541458 . - 0 ID=cds-WP_230428200.1;Parent=gene-LPH39_RS10585;Dbxref=Genbank:WP_230428200.1;Name=WP_230428200.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013676.2;locus_tag=LPH39_RS10585;product=transposase;protein_id=WP_230428200.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2542287 2542979 . - . ID=gene-LPH39_RS10590;Name=LPH39_RS10590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10590;old_locus_tag=LPH39_10590 NZ_CP087677.1 Protein Homology CDS 2542287 2542979 . - 0 ID=cds-WP_200866177.1;Parent=gene-LPH39_RS10590;Dbxref=Genbank:WP_200866177.1;Name=WP_200866177.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: protein motif:HMM:NF012301.2;locus_tag=LPH39_RS10590;product=response regulator;protein_id=WP_200866177.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2542976 2545537 . - . ID=gene-LPH39_RS10595;Name=LPH39_RS10595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10595;old_locus_tag=LPH39_10595 NZ_CP087677.1 Protein Homology CDS 2542976 2545537 . - 0 ID=cds-WP_230428201.1;Parent=gene-LPH39_RS10595;Dbxref=Genbank:WP_230428201.1;Name=WP_230428201.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014728.2;locus_tag=LPH39_RS10595;product=sensor histidine kinase KdpD;protein_id=WP_230428201.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2545651 2546235 . - . ID=gene-LPH39_RS10600;Name=kdpC;gbkey=Gene;gene=kdpC;gene_biotype=protein_coding;locus_tag=LPH39_RS10600;old_locus_tag=LPH39_10600 NZ_CP087677.1 Protein Homology CDS 2545651 2546235 . - 0 ID=cds-WP_038270142.1;Parent=gene-LPH39_RS10600;Dbxref=Genbank:WP_038270142.1;Name=WP_038270142.1;Ontology_term=GO:0006813,GO:0008556,GO:0016020;gbkey=CDS;gene=kdpC;go_component=membrane|0016020||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807711.1;locus_tag=LPH39_RS10600;product=potassium-transporting ATPase subunit KdpC;protein_id=WP_038270142.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2546247 2548277 . - . ID=gene-LPH39_RS10605;Name=kdpB;gbkey=Gene;gene=kdpB;gene_biotype=protein_coding;locus_tag=LPH39_RS10605;old_locus_tag=LPH39_10605 NZ_CP087677.1 Protein Homology CDS 2546247 2548277 . - 0 ID=cds-WP_038270140.1;Parent=gene-LPH39_RS10605;Dbxref=Genbank:WP_038270140.1;Name=WP_038270140.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpB;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018973802.1;locus_tag=LPH39_RS10605;product=potassium-transporting ATPase subunit KdpB;protein_id=WP_038270140.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2548293 2549996 . - . ID=gene-LPH39_RS10610;Name=kdpA;gbkey=Gene;gene=kdpA;gene_biotype=protein_coding;locus_tag=LPH39_RS10610;old_locus_tag=LPH39_10610 NZ_CP087677.1 Protein Homology CDS 2548293 2549996 . - 0 ID=cds-WP_038270138.1;Parent=gene-LPH39_RS10610;Dbxref=Genbank:WP_038270138.1;Name=WP_038270138.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpA;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017461263.1;locus_tag=LPH39_RS10610;product=potassium-transporting ATPase subunit KdpA;protein_id=WP_038270138.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2550010 2550099 . - . ID=gene-LPH39_RS10615;Name=kdpF;gbkey=Gene;gene=kdpF;gene_biotype=protein_coding;locus_tag=LPH39_RS10615;old_locus_tag=LPH39_10615 NZ_CP087677.1 Protein Homology CDS 2550010 2550099 . - 0 ID=cds-WP_038270136.1;Parent=gene-LPH39_RS10615;Dbxref=Genbank:WP_038270136.1;Name=WP_038270136.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpF;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007681729.1;locus_tag=LPH39_RS10615;product=K(+)-transporting ATPase subunit F;protein_id=WP_038270136.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2550205 2551050 . - . ID=gene-LPH39_RS10620;Name=LPH39_RS10620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10620;old_locus_tag=LPH39_10620 NZ_CP087677.1 Protein Homology CDS 2550205 2551050 . - 0 ID=cds-WP_114867100.1;Parent=gene-LPH39_RS10620;Dbxref=Genbank:WP_114867100.1;Name=WP_114867100.1;Ontology_term=GO:0015288;gbkey=CDS;go_function=porin activity|0015288||IEA;inference=COORDINATES: protein motif:HMM:TIGR02001.1;locus_tag=LPH39_RS10620;product=TorF family putative porin;protein_id=WP_114867100.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2552715 2553596 . - . ID=gene-LPH39_RS10625;Name=LPH39_RS10625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10625;old_locus_tag=LPH39_10625 NZ_CP087677.1 Protein Homology CDS 2552715 2553596 . - 0 ID=cds-WP_038270133.1;Parent=gene-LPH39_RS10625;Dbxref=Genbank:WP_038270133.1;Name=WP_038270133.1;Ontology_term=GO:0008803;gbkey=CDS;go_function=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity|0008803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852663.1;locus_tag=LPH39_RS10625;product=symmetrical bis(5'-nucleosyl)-tetraphosphatase;protein_id=WP_038270133.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2553610 2553993 . - . ID=gene-LPH39_RS10630;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=LPH39_RS10630;old_locus_tag=LPH39_10630 NZ_CP087677.1 Protein Homology CDS 2553610 2553993 . - 0 ID=cds-WP_038270131.1;Parent=gene-LPH39_RS10630;Dbxref=Genbank:WP_038270131.1;Name=WP_038270131.1;gbkey=CDS;gene=apaG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894598.1;locus_tag=LPH39_RS10630;product=Co2+/Mg2+ efflux protein ApaG;protein_id=WP_038270131.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2554030 2554827 . - . ID=gene-LPH39_RS10635;Name=rsmA;gbkey=Gene;gene=rsmA;gene_biotype=protein_coding;locus_tag=LPH39_RS10635;old_locus_tag=LPH39_10635 NZ_CP087677.1 Protein Homology CDS 2554030 2554827 . - 0 ID=cds-WP_038270130.1;Parent=gene-LPH39_RS10635;Dbxref=Genbank:WP_038270130.1;Name=WP_038270130.1;Ontology_term=GO:0000179;gbkey=CDS;gene=rsmA;go_function=rRNA (adenine-N6%2CN6-)-dimethyltransferase activity|0000179||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894597.1;locus_tag=LPH39_RS10635;product=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA;protein_id=WP_038270130.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2555977 2556609 . - . ID=gene-LPH39_RS10640;Name=rnt;gbkey=Gene;gene=rnt;gene_biotype=protein_coding;locus_tag=LPH39_RS10640;old_locus_tag=LPH39_10640 NZ_CP087677.1 Protein Homology CDS 2555977 2556609 . - 0 ID=cds-WP_038270127.1;Parent=gene-LPH39_RS10640;Dbxref=Genbank:WP_038270127.1;Name=WP_038270127.1;Ontology_term=GO:0006364,GO:0042780,GO:0016896;gbkey=CDS;gene=rnt;go_function=exoribonuclease activity%2C producing 5'-phosphomonoesters|0016896||IEA;go_process=rRNA processing|0006364||IEA,tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086100.1;locus_tag=LPH39_RS10640;product=ribonuclease T;protein_id=WP_038270127.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2556855 2557565 . - . ID=gene-LPH39_RS10645;Name=phoU;gbkey=Gene;gene=phoU;gene_biotype=protein_coding;locus_tag=LPH39_RS10645;old_locus_tag=LPH39_10645 NZ_CP087677.1 Protein Homology CDS 2556855 2557565 . - 0 ID=cds-WP_038270125.1;Parent=gene-LPH39_RS10645;Dbxref=Genbank:WP_038270125.1;Name=WP_038270125.1;Ontology_term=GO:0051049,GO:0003700;gbkey=CDS;gene=phoU;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transport|0051049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894594.1;locus_tag=LPH39_RS10645;product=phosphate signaling complex protein PhoU;protein_id=WP_038270125.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2557584 2558414 . - . ID=gene-LPH39_RS10650;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=LPH39_RS10650;old_locus_tag=LPH39_10650 NZ_CP087677.1 Protein Homology CDS 2557584 2558414 . - 0 ID=cds-WP_038270123.1;Parent=gene-LPH39_RS10650;Dbxref=Genbank:WP_038270123.1;Name=WP_038270123.1;Ontology_term=GO:0005524,GO:0015415,GO:0009898,GO:0055052;gbkey=CDS;gene=pstB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237787.1;locus_tag=LPH39_RS10650;product=phosphate ABC transporter ATP-binding protein PstB;protein_id=WP_038270123.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2558435 2559298 . - . ID=gene-LPH39_RS10655;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=LPH39_RS10655;old_locus_tag=LPH39_10655 NZ_CP087677.1 Protein Homology CDS 2558435 2559298 . - 0 ID=cds-WP_038270121.1;Parent=gene-LPH39_RS10655;Dbxref=Genbank:WP_038270121.1;Name=WP_038270121.1;Ontology_term=GO:0015415,GO:0005886,GO:0055052;gbkey=CDS;gene=pstA;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155848.1;locus_tag=LPH39_RS10655;product=phosphate ABC transporter permease PstA;protein_id=WP_038270121.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2559298 2560272 . - . ID=gene-LPH39_RS10660;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=LPH39_RS10660;old_locus_tag=LPH39_10660 NZ_CP087677.1 Protein Homology CDS 2559298 2560272 . - 0 ID=cds-WP_038270116.1;Parent=gene-LPH39_RS10660;Dbxref=Genbank:WP_038270116.1;Name=WP_038270116.1;Ontology_term=GO:0015415,GO:0005886,GO:0055052;gbkey=CDS;gene=pstC;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572163.1;locus_tag=LPH39_RS10660;product=phosphate ABC transporter permease subunit PstC;protein_id=WP_038270116.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2560384 2561478 . - . ID=gene-LPH39_RS10665;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=LPH39_RS10665;old_locus_tag=LPH39_10665 NZ_CP087677.1 Protein Homology CDS 2560384 2561478 . - 0 ID=cds-WP_038270114.1;Parent=gene-LPH39_RS10665;Dbxref=Genbank:WP_038270114.1;Name=WP_038270114.1;Ontology_term=GO:0015415,GO:0042301,GO:0009897,GO:0030288,GO:0055052;gbkey=CDS;gene=pstS;go_component=external side of plasma membrane|0009897||IEA,outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA,phosphate ion binding|0042301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966222.1;locus_tag=LPH39_RS10665;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=WP_038270114.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2561956 2563650 . - . ID=gene-LPH39_RS10670;Name=LPH39_RS10670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10670;old_locus_tag=LPH39_10670 NZ_CP087677.1 Protein Homology CDS 2561956 2563650 . - 0 ID=cds-WP_038270112.1;Parent=gene-LPH39_RS10670;Dbxref=Genbank:WP_038270112.1;Name=WP_038270112.1;Ontology_term=GO:0006813,GO:0008324,GO:0015299,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=cation transmembrane transporter activity|0008324||IEA,solute:proton antiporter activity|0015299||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088642.1;locus_tag=LPH39_RS10670;product=Kef family K(+) transporter;protein_id=WP_038270112.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2564365 2566728 . - . ID=gene-LPH39_RS10675;Name=LPH39_RS10675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10675;old_locus_tag=LPH39_10675 NZ_CP087677.1 Protein Homology CDS 2564365 2566728 . - 0 ID=cds-WP_038270110.1;Parent=gene-LPH39_RS10675;Dbxref=Genbank:WP_038270110.1;Name=WP_038270110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086090.1;locus_tag=LPH39_RS10675;product=TonB-dependent receptor;protein_id=WP_038270110.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2568062 2568733 . + . ID=gene-LPH39_RS10680;Name=LPH39_RS10680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10680;old_locus_tag=LPH39_10680 NZ_CP087677.1 Protein Homology CDS 2568062 2568733 . + 0 ID=cds-WP_038270092.1;Parent=gene-LPH39_RS10680;Dbxref=Genbank:WP_038270092.1;Name=WP_038270092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088644.1;locus_tag=LPH39_RS10680;product=DsbA family oxidoreductase;protein_id=WP_038270092.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2568824 2571099 . - . ID=gene-LPH39_RS10685;Name=LPH39_RS10685;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS10685;old_locus_tag=LPH39_10685;pseudo=true NZ_CP087677.1 Protein Homology CDS 2568824 2571099 . - 0 ID=cds-LPH39_RS10685;Parent=gene-LPH39_RS10685;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097995.1;locus_tag=LPH39_RS10685;product=TonB-dependent receptor;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2571252 2573189 . + . ID=gene-LPH39_RS10690;Name=LPH39_RS10690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10690;old_locus_tag=LPH39_10690 NZ_CP087677.1 Protein Homology CDS 2571252 2573189 . + 0 ID=cds-WP_038270089.1;Parent=gene-LPH39_RS10690;Dbxref=Genbank:WP_038270089.1;Name=WP_038270089.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924596.1;locus_tag=LPH39_RS10690;product=ATP-binding cassette domain-containing protein;protein_id=WP_038270089.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2574944 2575017 . - . ID=gene-LPH39_RS10695;Name=LPH39_RS10695;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS10695;old_locus_tag=LPH39_10695 NZ_CP087677.1 tRNAscan-SE tRNA 2574944 2575017 . - . ID=rna-LPH39_RS10695;Parent=gene-LPH39_RS10695;anticodon=(pos:complement(2574983..2574985));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS10695;product=tRNA-Cys NZ_CP087677.1 tRNAscan-SE exon 2574944 2575017 . - . ID=exon-LPH39_RS10695-1;Parent=rna-LPH39_RS10695;anticodon=(pos:complement(2574983..2574985));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS10695;product=tRNA-Cys NZ_CP087677.1 RefSeq gene 2575088 2575163 . - . ID=gene-LPH39_RS10700;Name=LPH39_RS10700;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS10700;old_locus_tag=LPH39_10700 NZ_CP087677.1 tRNAscan-SE tRNA 2575088 2575163 . - . ID=rna-LPH39_RS10700;Parent=gene-LPH39_RS10700;anticodon=(pos:complement(2575128..2575130));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS10700;product=tRNA-Gly NZ_CP087677.1 tRNAscan-SE exon 2575088 2575163 . - . ID=exon-LPH39_RS10700-1;Parent=rna-LPH39_RS10700;anticodon=(pos:complement(2575128..2575130));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS10700;product=tRNA-Gly NZ_CP087677.1 RefSeq gene 2575200 2575835 . - . ID=gene-LPH39_RS10705;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=LPH39_RS10705;old_locus_tag=LPH39_10705 NZ_CP087677.1 Protein Homology CDS 2575200 2575835 . - 0 ID=cds-WP_038270086.1;Parent=gene-LPH39_RS10705;Dbxref=Genbank:WP_038270086.1;Name=WP_038270086.1;Ontology_term=GO:0008654,GO:0008444;gbkey=CDS;gene=pgsA;go_function=CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|0008444||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894757.1;locus_tag=LPH39_RS10705;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_038270086.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2575835 2577697 . - . ID=gene-LPH39_RS10710;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=LPH39_RS10710;old_locus_tag=LPH39_10710 NZ_CP087677.1 Protein Homology CDS 2575835 2577697 . - 0 ID=cds-WP_038270083.1;Parent=gene-LPH39_RS10710;Dbxref=Genbank:WP_038270083.1;Name=WP_038270083.1;Ontology_term=GO:0006289,GO:0009381,GO:0009380;gbkey=CDS;gene=uvrC;go_component=excinuclease repair complex|0009380||IEA;go_function=excinuclease ABC activity|0009381||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098050.1;locus_tag=LPH39_RS10710;product=excinuclease ABC subunit UvrC;protein_id=WP_038270083.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2578531 2578995 . - . ID=gene-LPH39_RS10715;Name=LPH39_RS10715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10715;old_locus_tag=LPH39_10715 NZ_CP087677.1 Protein Homology CDS 2578531 2578995 . - 0 ID=cds-WP_038270078.1;Parent=gene-LPH39_RS10715;Dbxref=Genbank:WP_038270078.1;Name=WP_038270078.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916712.1;locus_tag=LPH39_RS10715;product=low molecular weight phosphotyrosine protein phosphatase;protein_id=WP_038270078.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2578992 2579765 . - . ID=gene-LPH39_RS10720;Name=kdsB;gbkey=Gene;gene=kdsB;gene_biotype=protein_coding;locus_tag=LPH39_RS10720;old_locus_tag=LPH39_10720 NZ_CP087677.1 Protein Homology CDS 2578992 2579765 . - 0 ID=cds-WP_038270076.1;Parent=gene-LPH39_RS10720;Dbxref=Genbank:WP_038270076.1;Name=WP_038270076.1;Ontology_term=GO:0009244,GO:0008690;gbkey=CDS;gene=kdsB;go_function=3-deoxy-manno-octulosonate cytidylyltransferase activity|0008690||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852623.1;locus_tag=LPH39_RS10720;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_038270076.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2580772 2581659 . + . ID=gene-LPH39_RS10725;Name=apbC;gbkey=Gene;gene=apbC;gene_biotype=protein_coding;locus_tag=LPH39_RS10725;old_locus_tag=LPH39_10725 NZ_CP087677.1 Protein Homology CDS 2580772 2581659 . + 0 ID=cds-WP_051482243.1;Parent=gene-LPH39_RS10725;Dbxref=Genbank:WP_051482243.1;Name=WP_051482243.1;Ontology_term=GO:0016226,GO:0005524,GO:0016887,GO:0051536;gbkey=CDS;gene=apbC;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852622.1;locus_tag=LPH39_RS10725;product=iron-sulfur cluster carrier protein ApbC;protein_id=WP_051482243.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2581820 2583127 . - . ID=gene-LPH39_RS10730;Name=hemL;gbkey=Gene;gene=hemL;gene_biotype=protein_coding;locus_tag=LPH39_RS10730;old_locus_tag=LPH39_10730 NZ_CP087677.1 Protein Homology CDS 2581820 2583127 . - 0 ID=cds-WP_038270070.1;Parent=gene-LPH39_RS10730;Dbxref=Genbank:WP_038270070.1;Name=WP_038270070.1;Ontology_term=GO:0006779,GO:0042286,GO:0005737;gbkey=CDS;gene=hemL;go_component=cytoplasm|0005737||IEA;go_function=glutamate-1-semialdehyde 2%2C1-aminomutase activity|0042286||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085701.1;locus_tag=LPH39_RS10730;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=WP_038270070.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2584139 2584987 . + . ID=gene-LPH39_RS10735;Name=LPH39_RS10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10735;old_locus_tag=LPH39_10735 NZ_CP087677.1 Protein Homology CDS 2584139 2584987 . + 0 ID=cds-WP_081755396.1;Parent=gene-LPH39_RS10735;Dbxref=Genbank:WP_081755396.1;Name=WP_081755396.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340307.1;locus_tag=LPH39_RS10735;product=DNA/RNA non-specific endonuclease;protein_id=WP_081755396.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2584902 2585906 . - . ID=gene-LPH39_RS10740;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;locus_tag=LPH39_RS10740;old_locus_tag=LPH39_10740 NZ_CP087677.1 Protein Homology CDS 2584902 2585906 . - 0 ID=cds-WP_038270065.1;Parent=gene-LPH39_RS10740;Dbxref=Genbank:WP_038270065.1;Name=WP_038270065.1;Ontology_term=GO:0033014,GO:0003824,GO:0004655,GO:0046872;gbkey=CDS;gene=hemB;go_function=catalytic activity|0003824||IEA,porphobilinogen synthase activity|0004655||IEA,metal ion binding|0046872||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852618.1;locus_tag=LPH39_RS10740;product=porphobilinogen synthase;protein_id=WP_038270065.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2586619 2587089 . + . ID=gene-LPH39_RS10745;Name=LPH39_RS10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10745;old_locus_tag=LPH39_10745 NZ_CP087677.1 Protein Homology CDS 2586619 2587089 . + 0 ID=cds-WP_081755393.1;Parent=gene-LPH39_RS10745;Dbxref=Genbank:WP_081755393.1;Name=WP_081755393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808472.1;locus_tag=LPH39_RS10745;product=hypothetical protein;protein_id=WP_081755393.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2587307 2588092 . + . ID=gene-LPH39_RS10750;Name=pcaD;gbkey=Gene;gene=pcaD;gene_biotype=protein_coding;locus_tag=LPH39_RS10750;old_locus_tag=LPH39_10750 NZ_CP087677.1 Protein Homology CDS 2587307 2588092 . + 0 ID=cds-WP_038270300.1;Parent=gene-LPH39_RS10750;Dbxref=Genbank:WP_038270300.1;Name=WP_038270300.1;Ontology_term=GO:0042952,GO:0047570;gbkey=CDS;gene=pcaD;go_function=3-oxoadipate enol-lactonase activity|0047570||IEA;go_process=beta-ketoadipate pathway|0042952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346074.1;locus_tag=LPH39_RS10750;product=3-oxoadipate enol-lactonase;protein_id=WP_038270300.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2588170 2588952 . - . ID=gene-LPH39_RS10755;Name=LPH39_RS10755;end_range=2588952,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS10755;old_locus_tag=LPH39_10755;partial=true;pseudo=true NZ_CP087677.1 Protein Homology CDS 2588170 2588952 . - 0 ID=cds-LPH39_RS10755;Parent=gene-LPH39_RS10755;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006355,GO:0003677;end_range=2588952,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017908152.1;locus_tag=LPH39_RS10755;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2589463 2589894 . - . ID=gene-LPH39_RS10760;Name=LPH39_RS10760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10760;old_locus_tag=LPH39_10760 NZ_CP087677.1 GeneMarkS-2+ CDS 2589463 2589894 . - 0 ID=cds-WP_038270055.1;Parent=gene-LPH39_RS10760;Dbxref=Genbank:WP_038270055.1;Name=WP_038270055.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10760;product=hypothetical protein;protein_id=WP_038270055.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2590199 2592088 . - . ID=gene-LPH39_RS10765;Name=mnmG;gbkey=Gene;gene=mnmG;gene_biotype=protein_coding;locus_tag=LPH39_RS10765;old_locus_tag=LPH39_10765 NZ_CP087677.1 Protein Homology CDS 2590199 2592088 . - 0 ID=cds-WP_038270052.1;Parent=gene-LPH39_RS10765;Dbxref=Genbank:WP_038270052.1;Name=WP_038270052.1;Ontology_term=GO:0002098,GO:0008033,GO:0050660;gbkey=CDS;gene=mnmG;go_function=flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA wobble uridine modification|0002098||IEA,tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437137.1;locus_tag=LPH39_RS10765;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG;protein_id=WP_038270052.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2593368 2593535 . + . ID=gene-LPH39_RS10770;Name=LPH39_RS10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10770;old_locus_tag=LPH39_10770 NZ_CP087677.1 GeneMarkS-2+ CDS 2593368 2593535 . + 0 ID=cds-WP_160165115.1;Parent=gene-LPH39_RS10770;Dbxref=Genbank:WP_160165115.1;Name=WP_160165115.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10770;product=hypothetical protein;protein_id=WP_160165115.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2593692 2594288 . + . ID=gene-LPH39_RS10775;Name=LPH39_RS10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10775;old_locus_tag=LPH39_10775 NZ_CP087677.1 Protein Homology CDS 2593692 2594288 . + 0 ID=cds-WP_230428282.1;Parent=gene-LPH39_RS10775;Dbxref=Genbank:WP_230428282.1;Name=WP_230428282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097781.1;locus_tag=LPH39_RS10775;product=YdcF family protein;protein_id=WP_230428282.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2595273 2596178 . - . ID=gene-LPH39_RS10780;Name=lpxO;gbkey=Gene;gene=lpxO;gene_biotype=protein_coding;locus_tag=LPH39_RS10780;old_locus_tag=LPH39_10780 NZ_CP087677.1 Protein Homology CDS 2595273 2596178 . - 0 ID=cds-WP_038270046.1;Parent=gene-LPH39_RS10780;Dbxref=Genbank:WP_038270046.1;Name=WP_038270046.1;Ontology_term=GO:0018193;gbkey=CDS;gene=lpxO;go_process=peptidyl-amino acid modification|0018193||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014404353.1;locus_tag=LPH39_RS10780;product=lipid A hydroxylase LpxO;protein_id=WP_038270046.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2596254 2597141 . - . ID=gene-LPH39_RS10785;Name=bioC;gbkey=Gene;gene=bioC;gene_biotype=protein_coding;locus_tag=LPH39_RS10785;old_locus_tag=LPH39_10785 NZ_CP087677.1 Protein Homology CDS 2596254 2597141 . - 0 ID=cds-WP_038270294.1;Parent=gene-LPH39_RS10785;Dbxref=Genbank:WP_038270294.1;Name=WP_038270294.1;Ontology_term=GO:0009102,GO:0008171;gbkey=CDS;gene=bioC;go_function=O-methyltransferase activity|0008171||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851129.1;locus_tag=LPH39_RS10785;product=malonyl-ACP O-methyltransferase BioC;protein_id=WP_038270294.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2597536 2597673 . + . ID=gene-LPH39_RS10790;Name=LPH39_RS10790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS10790;old_locus_tag=LPH39_10790;partial=true;pseudo=true;start_range=.,2597536 NZ_CP087677.1 Protein Homology CDS 2597536 2597673 . + 0 ID=cds-LPH39_RS10790;Parent=gene-LPH39_RS10790;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LPH39_RS10790;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,2597536;transl_table=11 NZ_CP087677.1 RefSeq gene 2598531 2598755 . - . ID=gene-LPH39_RS10795;Name=LPH39_RS10795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10795;old_locus_tag=LPH39_10795 NZ_CP087677.1 Protein Homology CDS 2598531 2598755 . - 0 ID=cds-WP_038270037.1;Parent=gene-LPH39_RS10795;Dbxref=Genbank:WP_038270037.1;Name=WP_038270037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097784.1;locus_tag=LPH39_RS10795;product=hypothetical protein;protein_id=WP_038270037.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2599154 2599699 . + . ID=gene-LPH39_RS10800;Name=LPH39_RS10800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10800;old_locus_tag=LPH39_10800 NZ_CP087677.1 Protein Homology CDS 2599154 2599699 . + 0 ID=cds-WP_038270035.1;Parent=gene-LPH39_RS10800;Dbxref=Genbank:WP_038270035.1;Name=WP_038270035.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: protein motif:HMM:NF013670.2;locus_tag=LPH39_RS10800;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_038270035.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2599852 2600757 . + . ID=gene-LPH39_RS10805;Name=folE2;gbkey=Gene;gene=folE2;gene_biotype=protein_coding;locus_tag=LPH39_RS10805;old_locus_tag=LPH39_10805 NZ_CP087677.1 Protein Homology CDS 2599852 2600757 . + 0 ID=cds-WP_171898079.1;Parent=gene-LPH39_RS10805;Dbxref=Genbank:WP_171898079.1;Name=WP_171898079.1;Ontology_term=GO:0035998,GO:0003933;gbkey=CDS;gene=folE2;go_function=GTP cyclohydrolase activity|0003933||IEA;go_process=7%2C8-dihydroneopterin 3'-triphosphate biosynthetic process|0035998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051138.1;locus_tag=LPH39_RS10805;product=GTP cyclohydrolase FolE2;protein_id=WP_171898079.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2600820 2601380 . + . ID=gene-LPH39_RS10810;Name=LPH39_RS10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10810;old_locus_tag=LPH39_10810 NZ_CP087677.1 Protein Homology CDS 2600820 2601380 . + 0 ID=cds-WP_038270030.1;Parent=gene-LPH39_RS10810;Dbxref=Genbank:WP_038270030.1;Name=WP_038270030.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382543.1;locus_tag=LPH39_RS10810;product=carbonate dehydratase;protein_id=WP_038270030.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2601576 2604743 . - . ID=gene-LPH39_RS10815;Name=LPH39_RS10815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10815;old_locus_tag=LPH39_10815 NZ_CP087677.1 Protein Homology CDS 2601576 2604743 . - 0 ID=cds-WP_038270028.1;Parent=gene-LPH39_RS10815;Dbxref=Genbank:WP_038270028.1;Name=WP_038270028.1;Ontology_term=GO:0042908,GO:0055085,GO:0015562,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=xenobiotic transport|0042908||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851125.1;locus_tag=LPH39_RS10815;product=multidrug efflux RND transporter permease subunit;protein_id=WP_038270028.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2604758 2605951 . - . ID=gene-LPH39_RS10820;Name=LPH39_RS10820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10820;old_locus_tag=LPH39_10820 NZ_CP087677.1 Protein Homology CDS 2604758 2605951 . - 0 ID=cds-WP_038270025.1;Parent=gene-LPH39_RS10820;Dbxref=Genbank:WP_038270025.1;Name=WP_038270025.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086749.1;locus_tag=LPH39_RS10820;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_038270025.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2606995 2611986 . + . ID=gene-LPH39_RS10825;Name=LPH39_RS10825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10825;old_locus_tag=LPH39_10825 NZ_CP087677.1 Protein Homology CDS 2606995 2611986 . + 0 ID=cds-WP_038270022.1;Parent=gene-LPH39_RS10825;Dbxref=Genbank:WP_038270022.1;Name=WP_038270022.1;Ontology_term=GO:0019551,GO:0004352;gbkey=CDS;go_function=glutamate dehydrogenase (NAD+) activity|0004352||IEA;go_process=glutamate catabolic process to 2-oxoglutarate|0019551||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851123.1;locus_tag=LPH39_RS10825;product=NAD-glutamate dehydrogenase;protein_id=WP_038270022.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2612082 2612849 . + . ID=gene-LPH39_RS10830;Name=LPH39_RS10830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10830;old_locus_tag=LPH39_10830 NZ_CP087677.1 Protein Homology CDS 2612082 2612849 . + 0 ID=cds-WP_038270019.1;Parent=gene-LPH39_RS10830;Dbxref=Genbank:WP_038270019.1;Name=WP_038270019.1;Ontology_term=GO:0006741,GO:0019674,GO:0003951;gbkey=CDS;go_function=NAD+ kinase activity|0003951||IEA;go_process=NADP biosynthetic process|0006741||IEA,NAD metabolic process|0019674||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919766.1;locus_tag=LPH39_RS10830;product=NAD kinase;protein_id=WP_038270019.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2612935 2613894 . + . ID=gene-LPH39_RS10835;Name=LPH39_RS10835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10835;old_locus_tag=LPH39_10835 NZ_CP087677.1 Protein Homology CDS 2612935 2613894 . + 0 ID=cds-WP_038270016.1;Parent=gene-LPH39_RS10835;Dbxref=Genbank:WP_038270016.1;Name=WP_038270016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894542.1;locus_tag=LPH39_RS10835;product=5'-nucleotidase;protein_id=WP_038270016.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2614354 2614812 . - . ID=gene-LPH39_RS10840;Name=LPH39_RS10840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10840;old_locus_tag=LPH39_10840 NZ_CP087677.1 GeneMarkS-2+ CDS 2614354 2614812 . - 0 ID=cds-WP_038270011.1;Parent=gene-LPH39_RS10840;Dbxref=Genbank:WP_038270011.1;Name=WP_038270011.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10840;product=hypothetical protein;protein_id=WP_038270011.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2615543 2615962 . + . ID=gene-LPH39_RS10845;Name=LPH39_RS10845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10845;old_locus_tag=LPH39_10845 NZ_CP087677.1 Protein Homology CDS 2615543 2615962 . + 0 ID=cds-WP_038270292.1;Parent=gene-LPH39_RS10845;Dbxref=Genbank:WP_038270292.1;Name=WP_038270292.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086769.1;locus_tag=LPH39_RS10845;product=cupin domain-containing protein;protein_id=WP_038270292.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2617057 2618115 . - . ID=gene-LPH39_RS10850;Name=LPH39_RS10850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10850;old_locus_tag=LPH39_10850 NZ_CP087677.1 Protein Homology CDS 2617057 2618115 . - 0 ID=cds-WP_051482238.1;Parent=gene-LPH39_RS10850;Dbxref=Genbank:WP_051482238.1;Name=WP_051482238.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894481.1;locus_tag=LPH39_RS10850;product=MBL fold metallo-hydrolase;protein_id=WP_051482238.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2618556 2619242 . - . ID=gene-LPH39_RS10855;Name=LPH39_RS10855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10855;old_locus_tag=LPH39_10855 NZ_CP087677.1 Protein Homology CDS 2618556 2619242 . - 0 ID=cds-WP_038270005.1;Parent=gene-LPH39_RS10855;Dbxref=Genbank:WP_038270005.1;Name=WP_038270005.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996685.1;locus_tag=LPH39_RS10855;product=TIGR02453 family protein;protein_id=WP_038270005.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2619239 2620684 . - . ID=gene-LPH39_RS10860;Name=sbcB;gbkey=Gene;gene=sbcB;gene_biotype=protein_coding;locus_tag=LPH39_RS10860;old_locus_tag=LPH39_10860 NZ_CP087677.1 Protein Homology CDS 2619239 2620684 . - 0 ID=cds-WP_038270002.1;Parent=gene-LPH39_RS10860;Dbxref=Genbank:WP_038270002.1;Name=WP_038270002.1;Ontology_term=GO:0006281,GO:0000175,GO:0003676,GO:0008852;gbkey=CDS;gene=sbcB;go_function=3'-5'-exoribonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA,exodeoxyribonuclease I activity|0008852||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366550.1;locus_tag=LPH39_RS10860;product=exodeoxyribonuclease I;protein_id=WP_038270002.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2621047 2621205 . + . ID=gene-LPH39_RS10865;Name=LPH39_RS10865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10865;old_locus_tag=LPH39_10865 NZ_CP087677.1 GeneMarkS-2+ CDS 2621047 2621205 . + 0 ID=cds-WP_160165114.1;Parent=gene-LPH39_RS10865;Dbxref=Genbank:WP_160165114.1;Name=WP_160165114.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10865;product=hypothetical protein;protein_id=WP_160165114.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2622199 2622411 . + . ID=gene-LPH39_RS10870;Name=LPH39_RS10870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10870;old_locus_tag=LPH39_10870 NZ_CP087677.1 GeneMarkS-2+ CDS 2622199 2622411 . + 0 ID=cds-WP_051482237.1;Parent=gene-LPH39_RS10870;Dbxref=Genbank:WP_051482237.1;Name=WP_051482237.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10870;product=hypothetical protein;protein_id=WP_051482237.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2622429 2622587 . + . ID=gene-LPH39_RS10875;Name=LPH39_RS10875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10875;old_locus_tag=LPH39_10875 NZ_CP087677.1 GeneMarkS-2+ CDS 2622429 2622587 . + 0 ID=cds-WP_230428202.1;Parent=gene-LPH39_RS10875;Dbxref=Genbank:WP_230428202.1;Name=WP_230428202.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10875;product=hypothetical protein;protein_id=WP_230428202.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2623333 2624991 . + . ID=gene-LPH39_RS10880;Name=LPH39_RS10880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10880;old_locus_tag=LPH39_10880 NZ_CP087677.1 Protein Homology CDS 2623333 2624991 . + 0 ID=cds-WP_201745787.1;Parent=gene-LPH39_RS10880;Dbxref=Genbank:WP_201745787.1;Name=WP_201745787.1;Ontology_term=GO:0006814,GO:0006885,GO:1902600,GO:0015385;gbkey=CDS;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573327.1;locus_tag=LPH39_RS10880;product=Na+/H+ antiporter;protein_id=WP_201745787.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2625388 2625936 . + . ID=gene-LPH39_RS10885;Name=LPH39_RS10885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10885;old_locus_tag=LPH39_10885 NZ_CP087677.1 Protein Homology CDS 2625388 2625936 . + 0 ID=cds-WP_038269994.1;Parent=gene-LPH39_RS10885;Dbxref=Genbank:WP_038269994.1;Name=WP_038269994.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452585.1;locus_tag=LPH39_RS10885;product=hypothetical protein;protein_id=WP_038269994.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2626140 2626787 . - . ID=gene-LPH39_RS10890;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=LPH39_RS10890;old_locus_tag=LPH39_10890 NZ_CP087677.1 Protein Homology CDS 2626140 2626787 . - 0 ID=cds-WP_038269991.1;Parent=gene-LPH39_RS10890;Dbxref=Genbank:WP_038269991.1;Name=WP_038269991.1;Ontology_term=GO:0009052,GO:0004751;gbkey=CDS;gene=rpiA;go_function=ribose-5-phosphate isomerase activity|0004751||IEA;go_process=pentose-phosphate shunt%2C non-oxidative branch|0009052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994531.1;locus_tag=LPH39_RS10890;product=ribose-5-phosphate isomerase RpiA;protein_id=WP_038269991.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2626846 2627316 . - . ID=gene-LPH39_RS10895;Name=LPH39_RS10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10895;old_locus_tag=LPH39_10895 NZ_CP087677.1 Protein Homology CDS 2626846 2627316 . - 0 ID=cds-WP_038269989.1;Parent=gene-LPH39_RS10895;Dbxref=Genbank:WP_038269989.1;Name=WP_038269989.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091182.1;locus_tag=LPH39_RS10895;product=EVE domain-containing protein;protein_id=WP_038269989.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2627313 2627900 . - . ID=gene-LPH39_RS10900;Name=LPH39_RS10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10900;old_locus_tag=LPH39_10900 NZ_CP087677.1 Protein Homology CDS 2627313 2627900 . - 0 ID=cds-WP_038269986.1;Parent=gene-LPH39_RS10900;Dbxref=Genbank:WP_038269986.1;Name=WP_038269986.1;Ontology_term=GO:0006730,GO:0030272;gbkey=CDS;go_function=5-formyltetrahydrofolate cyclo-ligase activity|0030272||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091180.1;locus_tag=LPH39_RS10900;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_038269986.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2628902 2629086 . - . ID=gene-LPH39_RS10905;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=ncRNA;locus_tag=LPH39_RS10905;old_locus_tag=LPH39_10905 NZ_CP087677.1 cmsearch ncRNA 2628902 2629086 . - . ID=rna-LPH39_RS10905;Parent=gene-LPH39_RS10905;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS10905;product=6S RNA NZ_CP087677.1 cmsearch exon 2628902 2629086 . - . ID=exon-LPH39_RS10905-1;Parent=rna-LPH39_RS10905;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH39_RS10905;product=6S RNA NZ_CP087677.1 RefSeq gene 2629188 2629487 . - . ID=gene-LPH39_RS10910;Name=LPH39_RS10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10910;old_locus_tag=LPH39_10910 NZ_CP087677.1 Protein Homology CDS 2629188 2629487 . - 0 ID=cds-WP_038269984.1;Parent=gene-LPH39_RS10910;Dbxref=Genbank:WP_038269984.1;Name=WP_038269984.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894469.1;locus_tag=LPH39_RS10910;product=cell division protein ZapA;protein_id=WP_038269984.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2629484 2629705 . - . ID=gene-LPH39_RS10915;Name=LPH39_RS10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10915;old_locus_tag=LPH39_10915 NZ_CP087677.1 Protein Homology CDS 2629484 2629705 . - 0 ID=cds-WP_038269981.1;Parent=gene-LPH39_RS10915;Dbxref=Genbank:WP_038269981.1;Name=WP_038269981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812462.1;locus_tag=LPH39_RS10915;product=TIGR02449 family protein;protein_id=WP_038269981.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2629864 2630406 . + . ID=gene-LPH39_RS10920;Name=LPH39_RS10920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10920;old_locus_tag=LPH39_10920 NZ_CP087677.1 Protein Homology CDS 2629864 2630406 . + 0 ID=cds-WP_038269978.1;Parent=gene-LPH39_RS10920;Dbxref=Genbank:WP_038269978.1;Name=WP_038269978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156855.1;locus_tag=LPH39_RS10920;product=YecA family protein;protein_id=WP_038269978.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2630415 2631743 . + . ID=gene-LPH39_RS10925;Name=LPH39_RS10925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10925;old_locus_tag=LPH39_10925 NZ_CP087677.1 Protein Homology CDS 2630415 2631743 . + 0 ID=cds-WP_038269975.1;Parent=gene-LPH39_RS10925;Dbxref=Genbank:WP_038269975.1;Name=WP_038269975.1;Ontology_term=GO:0030145,GO:0070006;gbkey=CDS;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085379.1;locus_tag=LPH39_RS10925;product=aminopeptidase P N-terminal domain-containing protein;protein_id=WP_038269975.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2631853 2632404 . - . ID=gene-LPH39_RS10930;Name=LPH39_RS10930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10930;old_locus_tag=LPH39_10930 NZ_CP087677.1 Protein Homology CDS 2631853 2632404 . - 0 ID=cds-WP_038269973.1;Parent=gene-LPH39_RS10930;Dbxref=Genbank:WP_038269973.1;Name=WP_038269973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382549.1;locus_tag=LPH39_RS10930;product=NUDIX hydrolase;protein_id=WP_038269973.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2632681 2632971 . + . ID=gene-LPH39_RS10935;Name=LPH39_RS10935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10935;old_locus_tag=LPH39_10935 NZ_CP087677.1 GeneMarkS-2+ CDS 2632681 2632971 . + 0 ID=cds-WP_038269970.1;Parent=gene-LPH39_RS10935;Dbxref=Genbank:WP_038269970.1;Name=WP_038269970.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10935;product=hypothetical protein;protein_id=WP_038269970.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2633480 2634055 . - . ID=gene-LPH39_RS10940;Name=LPH39_RS10940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10940;old_locus_tag=LPH39_10940 NZ_CP087677.1 Protein Homology CDS 2633480 2634055 . - 0 ID=cds-WP_038269967.1;Parent=gene-LPH39_RS10940;Dbxref=Genbank:WP_038269967.1;Name=WP_038269967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091174.1;locus_tag=LPH39_RS10940;product=nitroreductase;protein_id=WP_038269967.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2634240 2635622 . + . ID=gene-LPH39_RS10945;Name=LPH39_RS10945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10945;old_locus_tag=LPH39_10945 NZ_CP087677.1 Protein Homology CDS 2634240 2635622 . + 0 ID=cds-WP_081755389.1;Parent=gene-LPH39_RS10945;Dbxref=Genbank:WP_081755389.1;Name=WP_081755389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851083.1;locus_tag=LPH39_RS10945;product=DUF1631 family protein;protein_id=WP_081755389.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2635887 2638151 . + . ID=gene-LPH39_RS10950;Name=LPH39_RS10950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10950;old_locus_tag=LPH39_10950 NZ_CP087677.1 Protein Homology CDS 2635887 2638151 . + 0 ID=cds-WP_038270283.1;Parent=gene-LPH39_RS10950;Dbxref=Genbank:WP_038270283.1;Name=WP_038270283.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017356619.1;locus_tag=LPH39_RS10950;product=DUF1631 domain-containing protein;protein_id=WP_038270283.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2638363 2638782 . - . ID=gene-LPH39_RS10955;Name=LPH39_RS10955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10955;old_locus_tag=LPH39_10955 NZ_CP087677.1 Protein Homology CDS 2638363 2638782 . - 0 ID=cds-WP_038269965.1;Parent=gene-LPH39_RS10955;Dbxref=Genbank:WP_038269965.1;Name=WP_038269965.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156959.1;locus_tag=LPH39_RS10955;product=hypothetical protein;protein_id=WP_038269965.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2638913 2639464 . + . ID=gene-LPH39_RS10960;Name=sufT;gbkey=Gene;gene=sufT;gene_biotype=protein_coding;locus_tag=LPH39_RS10960;old_locus_tag=LPH39_10960 NZ_CP087677.1 Protein Homology CDS 2638913 2639464 . + 0 ID=cds-WP_038272808.1;Parent=gene-LPH39_RS10960;Dbxref=Genbank:WP_038272808.1;Name=WP_038272808.1;Ontology_term=GO:0016226,GO:0003674;gbkey=CDS;gene=sufT;go_function=molecular_function|0003674||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488784.1;locus_tag=LPH39_RS10960;product=putative Fe-S cluster assembly protein SufT;protein_id=WP_038272808.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2639523 2640611 . + . ID=gene-LPH39_RS10965;Name=LPH39_RS10965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10965;old_locus_tag=LPH39_10965 NZ_CP087677.1 Protein Homology CDS 2639523 2640611 . + 0 ID=cds-WP_038272810.1;Parent=gene-LPH39_RS10965;Dbxref=Genbank:WP_038272810.1;Name=WP_038272810.1;Ontology_term=GO:0009081,GO:0004084;gbkey=CDS;go_function=branched-chain-amino-acid transaminase activity|0004084||IEA;go_process=branched-chain amino acid metabolic process|0009081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036086.1;locus_tag=LPH39_RS10965;product=branched-chain amino acid aminotransferase;protein_id=WP_038272810.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2640722 2641039 . - . ID=gene-LPH39_RS10970;Name=LPH39_RS10970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10970;old_locus_tag=LPH39_10970 NZ_CP087677.1 GeneMarkS-2+ CDS 2640722 2641039 . - 0 ID=cds-WP_152536663.1;Parent=gene-LPH39_RS10970;Dbxref=Genbank:WP_152536663.1;Name=WP_152536663.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10970;product=hypothetical protein;protein_id=WP_152536663.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2641203 2641544 . - . ID=gene-LPH39_RS10975;Name=LPH39_RS10975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10975;old_locus_tag=LPH39_10975 NZ_CP087677.1 GeneMarkS-2+ CDS 2641203 2641544 . - 0 ID=cds-WP_038272812.1;Parent=gene-LPH39_RS10975;Dbxref=Genbank:WP_038272812.1;Name=WP_038272812.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10975;product=hypothetical protein;protein_id=WP_038272812.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2641763 2642035 . - . ID=gene-LPH39_RS10980;Name=fis;gbkey=Gene;gene=fis;gene_biotype=protein_coding;locus_tag=LPH39_RS10980;old_locus_tag=LPH39_10980 NZ_CP087677.1 Protein Homology CDS 2641763 2642035 . - 0 ID=cds-WP_038272815.1;Parent=gene-LPH39_RS10980;Dbxref=Genbank:WP_038272815.1;Name=WP_038272815.1;gbkey=CDS;gene=fis;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091159.1;locus_tag=LPH39_RS10980;product=DNA-binding transcriptional regulator Fis;protein_id=WP_038272815.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2642121 2642810 . - . ID=gene-LPH39_RS10985;Name=LPH39_RS10985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10985;old_locus_tag=LPH39_10985 NZ_CP087677.1 Protein Homology CDS 2642121 2642810 . - 0 ID=cds-WP_038272817.1;Parent=gene-LPH39_RS10985;Dbxref=Genbank:WP_038272817.1;Name=WP_038272817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085492.1;locus_tag=LPH39_RS10985;product=DUF3426 domain-containing protein;protein_id=WP_038272817.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2642862 2643236 . - . ID=gene-LPH39_RS10990;Name=LPH39_RS10990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10990;old_locus_tag=LPH39_10990 NZ_CP087677.1 Protein Homology CDS 2642862 2643236 . - 0 ID=cds-WP_038272819.1;Parent=gene-LPH39_RS10990;Dbxref=Genbank:WP_038272819.1;Name=WP_038272819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607712.1;locus_tag=LPH39_RS10990;product=helix-turn-helix transcriptional regulator;protein_id=WP_038272819.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2643746 2644012 . + . ID=gene-LPH39_RS10995;Name=LPH39_RS10995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS10995;old_locus_tag=LPH39_10995 NZ_CP087677.1 GeneMarkS-2+ CDS 2643746 2644012 . + 0 ID=cds-WP_114867105.1;Parent=gene-LPH39_RS10995;Dbxref=Genbank:WP_114867105.1;Name=WP_114867105.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS10995;product=hypothetical protein;protein_id=WP_114867105.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2644287 2645516 . + . ID=gene-LPH39_RS11000;Name=LPH39_RS11000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11000;old_locus_tag=LPH39_11000 NZ_CP087677.1 Protein Homology CDS 2644287 2645516 . + 0 ID=cds-WP_038272822.1;Parent=gene-LPH39_RS11000;Dbxref=Genbank:WP_038272822.1;Name=WP_038272822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851076.1;locus_tag=LPH39_RS11000;product=O-antigen ligase;protein_id=WP_038272822.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2645556 2646419 . + . ID=gene-LPH39_RS11005;Name=LPH39_RS11005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11005;old_locus_tag=LPH39_11005 NZ_CP087677.1 Protein Homology CDS 2645556 2646419 . + 0 ID=cds-WP_051482381.1;Parent=gene-LPH39_RS11005;Dbxref=Genbank:WP_051482381.1;Name=WP_051482381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085488.1;locus_tag=LPH39_RS11005;product=glycosyltransferase family 2 protein;protein_id=WP_051482381.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2646416 2647450 . + . ID=gene-LPH39_RS11010;Name=LPH39_RS11010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11010;old_locus_tag=LPH39_11010 NZ_CP087677.1 Protein Homology CDS 2646416 2647450 . + 0 ID=cds-WP_038272823.1;Parent=gene-LPH39_RS11010;Dbxref=Genbank:WP_038272823.1;Name=WP_038272823.1;Ontology_term=GO:0047355,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=CDP-glycerol glycerophosphotransferase activity|0047355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851074.1;locus_tag=LPH39_RS11010;product=CDP-glycerol glycerophosphotransferase family protein;protein_id=WP_038272823.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2648299 2649495 . - . ID=gene-LPH39_RS11015;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=LPH39_RS11015;old_locus_tag=LPH39_11015 NZ_CP087677.1 Protein Homology CDS 2648299 2649495 . - 0 ID=cds-WP_038272824.1;Parent=gene-LPH39_RS11015;Dbxref=Genbank:WP_038272824.1;Name=WP_038272824.1;gbkey=CDS;gene=ribA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851073.1;locus_tag=LPH39_RS11015;product=GTP cyclohydrolase II RibA;protein_id=WP_038272824.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2649587 2649751 . - . ID=gene-LPH39_RS11020;Name=LPH39_RS11020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11020;old_locus_tag=LPH39_11020 NZ_CP087677.1 GeneMarkS-2+ CDS 2649587 2649751 . - 0 ID=cds-WP_160165225.1;Parent=gene-LPH39_RS11020;Dbxref=Genbank:WP_160165225.1;Name=WP_160165225.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11020;product=hypothetical protein;protein_id=WP_160165225.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2652176 2652727 . + . ID=gene-LPH39_RS11025;Name=LPH39_RS11025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11025;old_locus_tag=LPH39_11025 NZ_CP087677.1 Protein Homology CDS 2652176 2652727 . + 0 ID=cds-WP_038272837.1;Parent=gene-LPH39_RS11025;Dbxref=Genbank:WP_038272837.1;Name=WP_038272837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851072.1;locus_tag=LPH39_RS11025;product=TlpA disulfide reductase family protein;protein_id=WP_038272837.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2653037 2654245 . + . ID=gene-LPH39_RS11030;Name=LPH39_RS11030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11030;old_locus_tag=LPH39_11030 NZ_CP087677.1 Protein Homology CDS 2653037 2654245 . + 0 ID=cds-WP_038272829.1;Parent=gene-LPH39_RS11030;Dbxref=Genbank:WP_038272829.1;Name=WP_038272829.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851071.1;locus_tag=LPH39_RS11030;product=hypothetical protein;protein_id=WP_038272829.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2654747 2655067 . - . ID=gene-LPH39_RS11035;Name=LPH39_RS11035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11035;old_locus_tag=LPH39_11035 NZ_CP087677.1 GeneMarkS-2+ CDS 2654747 2655067 . - 0 ID=cds-WP_038272832.1;Parent=gene-LPH39_RS11035;Dbxref=Genbank:WP_038272832.1;Name=WP_038272832.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11035;product=hypothetical protein;protein_id=WP_038272832.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2655139 2655855 . - . ID=gene-LPH39_RS11040;Name=LPH39_RS11040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11040;old_locus_tag=LPH39_11040 NZ_CP087677.1 Protein Homology CDS 2655139 2655855 . - 0 ID=cds-WP_160165226.1;Parent=gene-LPH39_RS11040;Dbxref=Genbank:WP_160165226.1;Name=WP_160165226.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027825.2;locus_tag=LPH39_RS11040;product=portal protein;protein_id=WP_160165226.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2655852 2656958 . - . ID=gene-LPH39_RS11045;Name=LPH39_RS11045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11045;old_locus_tag=LPH39_11045 NZ_CP087677.1 Protein Homology CDS 2655852 2656958 . - 0 ID=cds-WP_114867106.1;Parent=gene-LPH39_RS11045;Dbxref=Genbank:WP_114867106.1;Name=WP_114867106.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016359.2;locus_tag=LPH39_RS11045;product=phage terminase large subunit;protein_id=WP_114867106.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2656955 2657356 . - . ID=gene-LPH39_RS11050;Name=LPH39_RS11050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11050;old_locus_tag=LPH39_11050 NZ_CP087677.1 Protein Homology CDS 2656955 2657356 . - 0 ID=cds-WP_114867107.1;Parent=gene-LPH39_RS11050;Dbxref=Genbank:WP_114867107.1;Name=WP_114867107.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853008.1;locus_tag=LPH39_RS11050;product=lysozyme;protein_id=WP_114867107.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2657609 2657944 . - . ID=gene-LPH39_RS11055;Name=LPH39_RS11055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11055;old_locus_tag=LPH39_11055 NZ_CP087677.1 Protein Homology CDS 2657609 2657944 . - 0 ID=cds-WP_038273322.1;Parent=gene-LPH39_RS11055;Dbxref=Genbank:WP_038273322.1;Name=WP_038273322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085025.1;locus_tag=LPH39_RS11055;product=type II toxin-antitoxin system HicB family antitoxin;protein_id=WP_038273322.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2657941 2658195 . - . ID=gene-LPH39_RS11060;Name=LPH39_RS11060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11060;old_locus_tag=LPH39_11060 NZ_CP087677.1 Protein Homology CDS 2657941 2658195 . - 0 ID=cds-WP_038273324.1;Parent=gene-LPH39_RS11060;Dbxref=Genbank:WP_038273324.1;Name=WP_038273324.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089517.1;locus_tag=LPH39_RS11060;product=type II toxin-antitoxin system HicA family toxin;protein_id=WP_038273324.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2658297 2658995 . - . ID=gene-LPH39_RS11065;Name=LPH39_RS11065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11065;old_locus_tag=LPH39_11065 NZ_CP087677.1 Protein Homology CDS 2658297 2658995 . - 0 ID=cds-WP_114867108.1;Parent=gene-LPH39_RS11065;Dbxref=Genbank:WP_114867108.1;Name=WP_114867108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852371.1;locus_tag=LPH39_RS11065;product=hypothetical protein;protein_id=WP_114867108.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2658952 2660145 . + . ID=gene-LPH39_RS11070;Name=LPH39_RS11070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11070;old_locus_tag=LPH39_11070 NZ_CP087677.1 GeneMarkS-2+ CDS 2658952 2660145 . + 0 ID=cds-WP_230428203.1;Parent=gene-LPH39_RS11070;Dbxref=Genbank:WP_230428203.1;Name=WP_230428203.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11070;product=hypothetical protein;protein_id=WP_230428203.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2660149 2660421 . + . ID=gene-LPH39_RS11075;Name=LPH39_RS11075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11075;old_locus_tag=LPH39_11075 NZ_CP087677.1 Protein Homology CDS 2660149 2660421 . + 0 ID=cds-WP_114867070.1-3;Parent=gene-LPH39_RS11075;Dbxref=Genbank:WP_114867070.1;Name=WP_114867070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382732.1;locus_tag=LPH39_RS11075;product=VRR-NUC domain-containing protein;protein_id=WP_114867070.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2660423 2660773 . - . ID=gene-LPH39_RS11080;Name=LPH39_RS11080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11080;old_locus_tag=LPH39_11080 NZ_CP087677.1 Protein Homology CDS 2660423 2660773 . - 0 ID=cds-WP_114867109.1;Parent=gene-LPH39_RS11080;Dbxref=Genbank:WP_114867109.1;Name=WP_114867109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382639.1;locus_tag=LPH39_RS11080;product=DUF1640 domain-containing protein;protein_id=WP_114867109.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2660849 2662195 . + . ID=gene-LPH39_RS11085;Name=LPH39_RS11085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11085;old_locus_tag=LPH39_11085 NZ_CP087677.1 Protein Homology CDS 2660849 2662195 . + 0 ID=cds-WP_114867110.1;Parent=gene-LPH39_RS11085;Dbxref=Genbank:WP_114867110.1;Name=WP_114867110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085030.1;locus_tag=LPH39_RS11085;product=DEAD/DEAH box helicase;protein_id=WP_114867110.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2662210 2663094 . + . ID=gene-LPH39_RS11090;Name=LPH39_RS11090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11090;old_locus_tag=LPH39_11090 NZ_CP087677.1 Protein Homology CDS 2662210 2663094 . + 0 ID=cds-WP_114867111.1;Parent=gene-LPH39_RS11090;Dbxref=Genbank:WP_114867111.1;Name=WP_114867111.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012360.2;locus_tag=LPH39_RS11090;product=hypothetical protein;protein_id=WP_114867111.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2663158 2663694 . + . ID=gene-LPH39_RS11095;Name=LPH39_RS11095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11095;old_locus_tag=LPH39_11095 NZ_CP087677.1 Protein Homology CDS 2663158 2663694 . + 0 ID=cds-WP_038273354.1-3;Parent=gene-LPH39_RS11095;Dbxref=Genbank:WP_038273354.1;Name=WP_038273354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337723.1;locus_tag=LPH39_RS11095;product=pilin;protein_id=WP_038273354.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2663745 2663981 . + . ID=gene-LPH39_RS11100;Name=LPH39_RS11100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11100;old_locus_tag=LPH39_11100 NZ_CP087677.1 Protein Homology CDS 2663745 2663981 . + 0 ID=cds-WP_069636229.1-2;Parent=gene-LPH39_RS11100;Dbxref=Genbank:WP_069636229.1;Name=WP_069636229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852651.1;locus_tag=LPH39_RS11100;product=DUF4224 domain-containing protein;protein_id=WP_069636229.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2663994 2665055 . + . ID=gene-LPH39_RS11105;Name=LPH39_RS11105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11105;old_locus_tag=LPH39_11105 NZ_CP087677.1 Protein Homology CDS 2663994 2665055 . + 0 ID=cds-WP_038273275.1-2;Parent=gene-LPH39_RS11105;Dbxref=Genbank:WP_038273275.1;Name=WP_038273275.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852652.1;locus_tag=LPH39_RS11105;product=tyrosine-type recombinase/integrase;protein_id=WP_038273275.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2665322 2666086 . - . ID=gene-LPH39_RS11110;Name=gloB;gbkey=Gene;gene=gloB;gene_biotype=protein_coding;locus_tag=LPH39_RS11110;old_locus_tag=LPH39_11110 NZ_CP087677.1 Protein Homology CDS 2665322 2666086 . - 0 ID=cds-WP_038272090.1;Parent=gene-LPH39_RS11110;Dbxref=Genbank:WP_038272090.1;Name=WP_038272090.1;Ontology_term=GO:0019243,GO:0004416;gbkey=CDS;gene=gloB;go_function=hydroxyacylglutathione hydrolase activity|0004416||IEA;go_process=methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione|0019243||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346589.1;locus_tag=LPH39_RS11110;product=hydroxyacylglutathione hydrolase;protein_id=WP_038272090.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2666131 2666745 . + . ID=gene-LPH39_RS11115;Name=LPH39_RS11115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11115;old_locus_tag=LPH39_11115 NZ_CP087677.1 Protein Homology CDS 2666131 2666745 . + 0 ID=cds-WP_230428204.1;Parent=gene-LPH39_RS11115;Dbxref=Genbank:WP_230428204.1;Name=WP_230428204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894608.1;locus_tag=LPH39_RS11115;product=class I SAM-dependent methyltransferase;protein_id=WP_230428204.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2666759 2667211 . + . ID=gene-LPH39_RS11120;Name=rnhA;gbkey=Gene;gene=rnhA;gene_biotype=protein_coding;locus_tag=LPH39_RS11120;old_locus_tag=LPH39_11120 NZ_CP087677.1 Protein Homology CDS 2666759 2667211 . + 0 ID=cds-WP_038272094.1;Parent=gene-LPH39_RS11120;Dbxref=Genbank:WP_038272094.1;Name=WP_038272094.1;Ontology_term=GO:0003676,GO:0004523;gbkey=CDS;gene=rnhA;go_function=nucleic acid binding|0003676||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088617.1;locus_tag=LPH39_RS11120;product=ribonuclease HI;protein_id=WP_038272094.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2667208 2667930 . + . ID=gene-LPH39_RS11125;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=LPH39_RS11125;old_locus_tag=LPH39_11125 NZ_CP087677.1 Protein Homology CDS 2667208 2667930 . + 0 ID=cds-WP_038272095.1;Parent=gene-LPH39_RS11125;Dbxref=Genbank:WP_038272095.1;Name=WP_038272095.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=dnaQ;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894606.1;locus_tag=LPH39_RS11125;product=DNA polymerase III subunit epsilon;protein_id=WP_038272095.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2667981 2668697 . - . ID=gene-LPH39_RS11130;Name=LPH39_RS11130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11130;old_locus_tag=LPH39_11130 NZ_CP087677.1 Protein Homology CDS 2667981 2668697 . - 0 ID=cds-WP_038272160.1;Parent=gene-LPH39_RS11130;Dbxref=Genbank:WP_038272160.1;Name=WP_038272160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483822.1;locus_tag=LPH39_RS11130;product=serine/threonine-protein phosphatase;protein_id=WP_038272160.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2668820 2668910 . + . ID=gene-LPH39_RS11135;Name=LPH39_RS11135;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS11135;old_locus_tag=LPH39_11135 NZ_CP087677.1 tRNAscan-SE tRNA 2668820 2668910 . + . ID=rna-LPH39_RS11135;Parent=gene-LPH39_RS11135;anticodon=(pos:2668854..2668856);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS11135;product=tRNA-Ser NZ_CP087677.1 tRNAscan-SE exon 2668820 2668910 . + . ID=exon-LPH39_RS11135-1;Parent=rna-LPH39_RS11135;anticodon=(pos:2668854..2668856);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS11135;product=tRNA-Ser NZ_CP087677.1 RefSeq gene 2670643 2671050 . + . ID=gene-LPH39_RS11140;Name=LPH39_RS11140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11140;old_locus_tag=LPH39_11140 NZ_CP087677.1 Protein Homology CDS 2670643 2671050 . + 0 ID=cds-WP_038272096.1;Parent=gene-LPH39_RS11140;Dbxref=Genbank:WP_038272096.1;Name=WP_038272096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086118.1;locus_tag=LPH39_RS11140;product=DUF6165 family protein;protein_id=WP_038272096.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2671068 2672120 . - . ID=gene-LPH39_RS11145;Name=LPH39_RS11145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11145;old_locus_tag=LPH39_11145 NZ_CP087677.1 Protein Homology CDS 2671068 2672120 . - 0 ID=cds-WP_038272098.1;Parent=gene-LPH39_RS11145;Dbxref=Genbank:WP_038272098.1;Name=WP_038272098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088625.1;locus_tag=LPH39_RS11145;product=glycosyltransferase family 9 protein;protein_id=WP_038272098.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2672142 2672891 . + . ID=gene-LPH39_RS11150;Name=LPH39_RS11150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11150;old_locus_tag=LPH39_11150 NZ_CP087677.1 Protein Homology CDS 2672142 2672891 . + 0 ID=cds-WP_038272101.1;Parent=gene-LPH39_RS11150;Dbxref=Genbank:WP_038272101.1;Name=WP_038272101.1;Ontology_term=GO:0016773;gbkey=CDS;go_function=phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088627.1;locus_tag=LPH39_RS11150;product=3-deoxy-D-manno-octulosonic acid kinase;protein_id=WP_038272101.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2673463 2675367 . + . ID=gene-LPH39_RS11155;Name=mdoH;gbkey=Gene;gene=mdoH;gene_biotype=protein_coding;locus_tag=LPH39_RS11155;old_locus_tag=LPH39_11155 NZ_CP087677.1 Protein Homology CDS 2673463 2675367 . + 0 ID=cds-WP_230428205.1;Parent=gene-LPH39_RS11155;Dbxref=Genbank:WP_230428205.1;Name=WP_230428205.1;gbkey=CDS;gene=mdoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084963.1;locus_tag=LPH39_RS11155;product=glucans biosynthesis glucosyltransferase MdoH;protein_id=WP_230428205.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2675400 2676071 . + . ID=gene-LPH39_RS11160;Name=LPH39_RS11160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11160;old_locus_tag=LPH39_11160 NZ_CP087677.1 Protein Homology CDS 2675400 2676071 . + 0 ID=cds-WP_038272161.1;Parent=gene-LPH39_RS11160;Dbxref=Genbank:WP_038272161.1;Name=WP_038272161.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894120.1;locus_tag=LPH39_RS11160;product=alpha/beta hydrolase;protein_id=WP_038272161.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2676123 2677121 . + . ID=gene-LPH39_RS11165;Name=LPH39_RS11165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11165;old_locus_tag=LPH39_11165 NZ_CP087677.1 Protein Homology CDS 2676123 2677121 . + 0 ID=cds-WP_051482362.1;Parent=gene-LPH39_RS11165;Dbxref=Genbank:WP_051482362.1;Name=WP_051482362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903807.1;locus_tag=LPH39_RS11165;product=sensor histidine kinase;protein_id=WP_051482362.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2677137 2677895 . + . ID=gene-LPH39_RS11170;Name=LPH39_RS11170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11170;old_locus_tag=LPH39_11170 NZ_CP087677.1 Protein Homology CDS 2677137 2677895 . + 0 ID=cds-WP_038272104.1;Parent=gene-LPH39_RS11170;Dbxref=Genbank:WP_038272104.1;Name=WP_038272104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851686.1;locus_tag=LPH39_RS11170;product=LytTR family DNA-binding domain-containing protein;protein_id=WP_038272104.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2677903 2678820 . + . ID=gene-LPH39_RS11175;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=LPH39_RS11175;old_locus_tag=LPH39_11175 NZ_CP087677.1 Protein Homology CDS 2677903 2678820 . + 0 ID=cds-WP_038272106.1;Parent=gene-LPH39_RS11175;Dbxref=Genbank:WP_038272106.1;Name=WP_038272106.1;Ontology_term=GO:0006779,GO:0004418,GO:0005737;gbkey=CDS;gene=hemC;go_component=cytoplasm|0005737||IEA;go_function=hydroxymethylbilane synthase activity|0004418||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894123.1;locus_tag=LPH39_RS11175;product=hydroxymethylbilane synthase;protein_id=WP_038272106.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2678858 2679667 . - . ID=gene-LPH39_RS11180;Name=LPH39_RS11180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11180;old_locus_tag=LPH39_11180 NZ_CP087677.1 Protein Homology CDS 2678858 2679667 . - 0 ID=cds-WP_038272108.1;Parent=gene-LPH39_RS11180;Dbxref=Genbank:WP_038272108.1;Name=WP_038272108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302001.1;locus_tag=LPH39_RS11180;product=DUF481 domain-containing protein;protein_id=WP_038272108.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2679844 2680437 . - . ID=gene-LPH39_RS11185;Name=LPH39_RS11185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11185;old_locus_tag=LPH39_11185 NZ_CP087677.1 GeneMarkS-2+ CDS 2679844 2680437 . - 0 ID=cds-WP_230430827.1;Parent=gene-LPH39_RS11185;Dbxref=Genbank:WP_230430827.1;Name=WP_230430827.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11185;product=hypothetical protein;protein_id=WP_230430827.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2680802 2681700 . + . ID=gene-LPH39_RS11190;Name=LPH39_RS11190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS11190;old_locus_tag=LPH39_11190;pseudo=true NZ_CP087677.1 Protein Homology CDS 2680802 2681700 . + 0 ID=cds-LPH39_RS11190;Parent=gene-LPH39_RS11190;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451607.1;locus_tag=LPH39_RS11190;product=WYL domain-containing protein;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2681931 2683061 . - . ID=gene-LPH39_RS11195;Name=LPH39_RS11195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11195;old_locus_tag=LPH39_11195 NZ_CP087677.1 Protein Homology CDS 2681931 2683061 . - 0 ID=cds-WP_038272110.1;Parent=gene-LPH39_RS11195;Dbxref=Genbank:WP_038272110.1;Name=WP_038272110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851681.1;locus_tag=LPH39_RS11195;product=PilT/PilU family type 4a pilus ATPase;protein_id=WP_038272110.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2683219 2684253 . - . ID=gene-LPH39_RS11200;Name=LPH39_RS11200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11200;old_locus_tag=LPH39_11200 NZ_CP087677.1 Protein Homology CDS 2683219 2684253 . - 0 ID=cds-WP_038272165.1;Parent=gene-LPH39_RS11200;Dbxref=Genbank:WP_038272165.1;Name=WP_038272165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003084552.1;locus_tag=LPH39_RS11200;product=type IV pilus twitching motility protein PilT;protein_id=WP_038272165.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2685858 2686709 . + . ID=gene-LPH39_RS11205;Name=LPH39_RS11205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11205;old_locus_tag=LPH39_11205 NZ_CP087677.1 Protein Homology CDS 2685858 2686709 . + 0 ID=cds-WP_081755470.1;Parent=gene-LPH39_RS11205;Dbxref=Genbank:WP_081755470.1;Name=WP_081755470.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017356673.1;locus_tag=LPH39_RS11205;product=glycosyltransferase family 2 protein;protein_id=WP_081755470.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2686880 2688133 . + . ID=gene-LPH39_RS11210;Name=LPH39_RS11210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11210;old_locus_tag=LPH39_11210 NZ_CP087677.1 Protein Homology CDS 2686880 2688133 . + 0 ID=cds-WP_038272115.1;Parent=gene-LPH39_RS11210;Dbxref=Genbank:WP_038272115.1;Name=WP_038272115.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009606734.1;locus_tag=LPH39_RS11210;product=flavohemoglobin expression-modulating QEGLA motif protein;protein_id=WP_038272115.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2688465 2689265 . - . ID=gene-LPH39_RS11215;Name=LPH39_RS11215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11215;old_locus_tag=LPH39_11215 NZ_CP087677.1 Protein Homology CDS 2688465 2689265 . - 0 ID=cds-WP_038272117.1;Parent=gene-LPH39_RS11215;Dbxref=Genbank:WP_038272117.1;Name=WP_038272117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571170.1;locus_tag=LPH39_RS11215;product=glycosyltransferase family 2 protein;protein_id=WP_038272117.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2689262 2690035 . - . ID=gene-LPH39_RS11220;Name=LPH39_RS11220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11220;old_locus_tag=LPH39_11220 NZ_CP087677.1 Protein Homology CDS 2689262 2690035 . - 0 ID=cds-WP_171898080.1;Parent=gene-LPH39_RS11220;Dbxref=Genbank:WP_171898080.1;Name=WP_171898080.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302406.1;locus_tag=LPH39_RS11220;product=beta-ketoacyl synthase chain length factor;protein_id=WP_171898080.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2690038 2691264 . - . ID=gene-LPH39_RS11225;Name=LPH39_RS11225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11225;old_locus_tag=LPH39_11225 NZ_CP087677.1 Protein Homology CDS 2690038 2691264 . - 0 ID=cds-WP_230428207.1;Parent=gene-LPH39_RS11225;Dbxref=Genbank:WP_230428207.1;Name=WP_230428207.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337879.1;locus_tag=LPH39_RS11225;product=beta-ketoacyl-[acyl-carrier-protein] synthase family protein;protein_id=WP_230428207.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2691528 2691677 . + . ID=gene-LPH39_RS11230;Name=LPH39_RS11230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11230;old_locus_tag=LPH39_11230 NZ_CP087677.1 GeneMarkS-2+ CDS 2691528 2691677 . + 0 ID=cds-WP_160165206.1;Parent=gene-LPH39_RS11230;Dbxref=Genbank:WP_160165206.1;Name=WP_160165206.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11230;product=hypothetical protein;protein_id=WP_160165206.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2691670 2694987 . + . ID=gene-LPH39_RS11235;Name=LPH39_RS11235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11235;old_locus_tag=LPH39_11235 NZ_CP087677.1 Protein Homology CDS 2691670 2694987 . + 0 ID=cds-WP_038272125.1;Parent=gene-LPH39_RS11235;Dbxref=Genbank:WP_038272125.1;Name=WP_038272125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087287.1;locus_tag=LPH39_RS11235;product=ankyrin repeat domain-containing protein;protein_id=WP_038272125.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2696093 2698681 . - . ID=gene-LPH39_RS11240;Name=mprF;gbkey=Gene;gene=mprF;gene_biotype=protein_coding;locus_tag=LPH39_RS11240;old_locus_tag=LPH39_11240 NZ_CP087677.1 Protein Homology CDS 2696093 2698681 . - 0 ID=cds-WP_038272132.1;Parent=gene-LPH39_RS11240;Dbxref=Genbank:WP_038272132.1;Name=WP_038272132.1;gbkey=CDS;gene=mprF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084924.1;locus_tag=LPH39_RS11240;product=bifunctional lysylphosphatidylglycerol flippase/synthetase MprF;protein_id=WP_038272132.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2699304 2699648 . + . ID=gene-LPH39_RS11245;Name=LPH39_RS11245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11245;old_locus_tag=LPH39_11245 NZ_CP087677.1 Protein Homology CDS 2699304 2699648 . + 0 ID=cds-WP_038272135.1;Parent=gene-LPH39_RS11245;Dbxref=Genbank:WP_038272135.1;Name=WP_038272135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084923.1;locus_tag=LPH39_RS11245;product=RidA family protein;protein_id=WP_038272135.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2700033 2700109 . + . ID=gene-LPH39_RS11250;Name=LPH39_RS11250;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS11250;old_locus_tag=LPH39_11250 NZ_CP087677.1 tRNAscan-SE tRNA 2700033 2700109 . + . ID=rna-LPH39_RS11250;Parent=gene-LPH39_RS11250;anticodon=(pos:2700067..2700069);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS11250;product=tRNA-Arg NZ_CP087677.1 tRNAscan-SE exon 2700033 2700109 . + . ID=exon-LPH39_RS11250-1;Parent=rna-LPH39_RS11250;anticodon=(pos:2700067..2700069);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS11250;product=tRNA-Arg NZ_CP087677.1 RefSeq gene 2700299 2701126 . - . ID=gene-LPH39_RS11255;Name=LPH39_RS11255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11255;old_locus_tag=LPH39_11255 NZ_CP087677.1 Protein Homology CDS 2700299 2701126 . - 0 ID=cds-WP_038272169.1;Parent=gene-LPH39_RS11255;Dbxref=Genbank:WP_038272169.1;Name=WP_038272169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572079.1;locus_tag=LPH39_RS11255;product=hypothetical protein;protein_id=WP_038272169.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2701272 2702174 . - . ID=gene-LPH39_RS11260;Name=LPH39_RS11260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11260;old_locus_tag=LPH39_11260 NZ_CP087677.1 Protein Homology CDS 2701272 2702174 . - 0 ID=cds-WP_051482360.1;Parent=gene-LPH39_RS11260;Dbxref=Genbank:WP_051482360.1;Name=WP_051482360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852738.1;locus_tag=LPH39_RS11260;product=Hsp33 family molecular chaperone HslO;protein_id=WP_051482360.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2702250 2702981 . + . ID=gene-LPH39_RS11265;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=protein_coding;locus_tag=LPH39_RS11265;old_locus_tag=LPH39_11265 NZ_CP087677.1 Protein Homology CDS 2702250 2702981 . + 0 ID=cds-WP_230428283.1;Parent=gene-LPH39_RS11265;Dbxref=Genbank:WP_230428283.1;Name=WP_230428283.1;Ontology_term=GO:0009252,GO:0009274,GO:0016020;gbkey=CDS;gene=mtgA;go_component=peptidoglycan-based cell wall|0009274||IEA,membrane|0016020||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382616.1;locus_tag=LPH39_RS11265;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=WP_230428283.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2703828 2706434 . + . ID=gene-LPH39_RS11270;Name=mutS;gbkey=Gene;gene=mutS;gene_biotype=protein_coding;locus_tag=LPH39_RS11270;old_locus_tag=LPH39_11270 NZ_CP087677.1 Protein Homology CDS 2703828 2706434 . + 0 ID=cds-WP_162814115.1;Parent=gene-LPH39_RS11270;Dbxref=Genbank:WP_162814115.1;Name=WP_162814115.1;Ontology_term=GO:0006298,GO:0005524;gbkey=CDS;gene=mutS;go_function=ATP binding|0005524||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031336652.1;locus_tag=LPH39_RS11270;product=DNA mismatch repair protein MutS;protein_id=WP_162814115.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2706481 2707287 . - . ID=gene-LPH39_RS11275;Name=LPH39_RS11275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11275;old_locus_tag=LPH39_11275 NZ_CP087677.1 Protein Homology CDS 2706481 2707287 . - 0 ID=cds-WP_038272139.1;Parent=gene-LPH39_RS11275;Dbxref=Genbank:WP_038272139.1;Name=WP_038272139.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852741.1;locus_tag=LPH39_RS11275;product=YggS family pyridoxal phosphate-dependent enzyme;protein_id=WP_038272139.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2707692 2707767 . + . ID=gene-LPH39_RS11280;Name=LPH39_RS11280;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS11280;old_locus_tag=LPH39_11280 NZ_CP087677.1 tRNAscan-SE tRNA 2707692 2707767 . + . ID=rna-LPH39_RS11280;Parent=gene-LPH39_RS11280;anticodon=(pos:2707725..2707727);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS11280;product=tRNA-Gly NZ_CP087677.1 tRNAscan-SE exon 2707692 2707767 . + . ID=exon-LPH39_RS11280-1;Parent=rna-LPH39_RS11280;anticodon=(pos:2707725..2707727);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS11280;product=tRNA-Gly NZ_CP087677.1 RefSeq gene 2707913 2708242 . + . ID=gene-LPH39_RS11285;Name=LPH39_RS11285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11285;old_locus_tag=LPH39_11285 NZ_CP087677.1 GeneMarkS-2+ CDS 2707913 2708242 . + 0 ID=cds-WP_152536648.1;Parent=gene-LPH39_RS11285;Dbxref=Genbank:WP_152536648.1;Name=WP_152536648.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11285;product=hypothetical protein;protein_id=WP_152536648.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2708948 2709901 . + . ID=gene-LPH39_RS11290;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;locus_tag=LPH39_RS11290;old_locus_tag=LPH39_11290 NZ_CP087677.1 Protein Homology CDS 2708948 2709901 . + 0 ID=cds-WP_038272140.1;Parent=gene-LPH39_RS11290;Dbxref=Genbank:WP_038272140.1;Name=WP_038272140.1;Ontology_term=GO:0006355,GO:0036211,GO:0004077;gbkey=CDS;gene=birA;go_function=biotin-[acetyl-CoA-carboxylase] ligase activity|0004077||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257360.1;locus_tag=LPH39_RS11290;product=bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;protein_id=WP_038272140.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2709898 2710623 . + . ID=gene-LPH39_RS11295;Name=LPH39_RS11295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11295;old_locus_tag=LPH39_11295 NZ_CP087677.1 Protein Homology CDS 2709898 2710623 . + 0 ID=cds-WP_038272143.1;Parent=gene-LPH39_RS11295;Dbxref=Genbank:WP_038272143.1;Name=WP_038272143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894264.1;locus_tag=LPH39_RS11295;product=type III pantothenate kinase;protein_id=WP_038272143.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2710634 2711260 . + . ID=gene-LPH39_RS11300;Name=LPH39_RS11300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11300;old_locus_tag=LPH39_11300 NZ_CP087677.1 Protein Homology CDS 2710634 2711260 . + 0 ID=cds-WP_038272144.1;Parent=gene-LPH39_RS11300;Dbxref=Genbank:WP_038272144.1;Name=WP_038272144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089397.1;locus_tag=LPH39_RS11300;product=SPOR domain-containing protein;protein_id=WP_038272144.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2711418 2711493 . + . ID=gene-LPH39_RS11305;Name=LPH39_RS11305;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS11305;old_locus_tag=LPH39_11305 NZ_CP087677.1 tRNAscan-SE tRNA 2711418 2711493 . + . ID=rna-LPH39_RS11305;Parent=gene-LPH39_RS11305;anticodon=(pos:2711451..2711453);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS11305;product=tRNA-Thr NZ_CP087677.1 tRNAscan-SE exon 2711418 2711493 . + . ID=exon-LPH39_RS11305-1;Parent=rna-LPH39_RS11305;anticodon=(pos:2711451..2711453);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS11305;product=tRNA-Thr NZ_CP087677.1 RefSeq gene 2712525 2712824 . + . ID=gene-LPH39_RS11310;Name=LPH39_RS11310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11310;old_locus_tag=LPH39_11310 NZ_CP087677.1 GeneMarkS-2+ CDS 2712525 2712824 . + 0 ID=cds-WP_038272145.1;Parent=gene-LPH39_RS11310;Dbxref=Genbank:WP_038272145.1;Name=WP_038272145.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11310;product=hypothetical protein;protein_id=WP_038272145.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2712951 2713193 . + . ID=gene-LPH39_RS11315;Name=LPH39_RS11315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11315;old_locus_tag=LPH39_11315 NZ_CP087677.1 Protein Homology CDS 2712951 2713193 . + 0 ID=cds-WP_160165207.1;Parent=gene-LPH39_RS11315;Dbxref=Genbank:WP_160165207.1;Name=WP_160165207.1;Ontology_term=GO:0019068,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: protein motif:HMM:NF016991.2;locus_tag=LPH39_RS11315;product=phage portal protein;protein_id=WP_160165207.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2713264 2713734 . + . ID=gene-LPH39_RS11320;Name=LPH39_RS11320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11320;old_locus_tag=LPH39_11320 NZ_CP087677.1 Protein Homology CDS 2713264 2713734 . + 0 ID=cds-WP_114867113.1;Parent=gene-LPH39_RS11320;Dbxref=Genbank:WP_114867113.1;Name=WP_114867113.1;Ontology_term=GO:0019068,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: protein motif:HMM:NF016991.2;locus_tag=LPH39_RS11320;product=phage portal protein;protein_id=WP_114867113.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2713961 2714578 . + . ID=gene-LPH39_RS11325;Name=LPH39_RS11325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11325;old_locus_tag=LPH39_11325 NZ_CP087677.1 Protein Homology CDS 2713961 2714578 . + 0 ID=cds-WP_038272147.1;Parent=gene-LPH39_RS11325;Dbxref=Genbank:WP_038272147.1;Name=WP_038272147.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894838.1;locus_tag=LPH39_RS11325;product=glycoside hydrolase family 25 protein;protein_id=WP_038272147.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2715363 2715468 . + . ID=gene-LPH39_RS11330;Name=LPH39_RS11330;end_range=2715468,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS11330;old_locus_tag=LPH39_11330;partial=true;pseudo=true;start_range=.,2715363 NZ_CP087677.1 Protein Homology CDS 2715363 2715468 . + 0 ID=cds-LPH39_RS11330;Parent=gene-LPH39_RS11330;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2715468,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097944.1;locus_tag=LPH39_RS11330;partial=true;product=BRO family protein;pseudo=true;start_range=.,2715363;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2715535 2715717 . + . ID=gene-LPH39_RS11335;Name=LPH39_RS11335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS11335;old_locus_tag=LPH39_11335;partial=true;pseudo=true;start_range=.,2715535 NZ_CP087677.1 Protein Homology CDS 2715535 2715717 . + 0 ID=cds-LPH39_RS11335;Parent=gene-LPH39_RS11335;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852371.1;locus_tag=LPH39_RS11335;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2715535;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2715839 2716136 . + . ID=gene-LPH39_RS11340;Name=LPH39_RS11340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS11340;old_locus_tag=LPH39_11340;pseudo=true NZ_CP087677.1 Protein Homology CDS 2715839 2716136 . + 0 ID=cds-LPH39_RS11340;Parent=gene-LPH39_RS11340;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894094.1;locus_tag=LPH39_RS11340;product=type II toxin-antitoxin system RelE/ParE family toxin;pseudo=true;transl_table=11 NZ_CP087677.1 RefSeq gene 2716133 2716432 . + . ID=gene-LPH39_RS11345;Name=LPH39_RS11345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11345;old_locus_tag=LPH39_11345 NZ_CP087677.1 Protein Homology CDS 2716133 2716432 . + 0 ID=cds-WP_171898051.1;Parent=gene-LPH39_RS11345;Dbxref=Genbank:WP_171898051.1;Name=WP_171898051.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009580422.1;locus_tag=LPH39_RS11345;product=putative addiction module antidote protein;protein_id=WP_171898051.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2716748 2717116 . + . ID=gene-LPH39_RS11350;Name=LPH39_RS11350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11350;old_locus_tag=LPH39_11350 NZ_CP087677.1 Protein Homology CDS 2716748 2717116 . + 0 ID=cds-WP_038272150.1;Parent=gene-LPH39_RS11350;Dbxref=Genbank:WP_038272150.1;Name=WP_038272150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085010.1;locus_tag=LPH39_RS11350;product=DUF4054 domain-containing protein;protein_id=WP_038272150.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2717164 2717730 . - . ID=gene-LPH39_RS11355;Name=LPH39_RS11355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11355;old_locus_tag=LPH39_11355 NZ_CP087677.1 Protein Homology CDS 2717164 2717730 . - 0 ID=cds-WP_038272151.1;Parent=gene-LPH39_RS11355;Dbxref=Genbank:WP_038272151.1;Name=WP_038272151.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084910.1;locus_tag=LPH39_RS11355;product=pilin;protein_id=WP_038272151.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2717778 2718233 . - . ID=gene-LPH39_RS11360;Name=LPH39_RS11360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11360;old_locus_tag=LPH39_11360 NZ_CP087677.1 GeneMarkS-2+ CDS 2717778 2718233 . - 0 ID=cds-WP_160199346.1;Parent=gene-LPH39_RS11360;Dbxref=Genbank:WP_160199346.1;Name=WP_160199346.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11360;product=hypothetical protein;protein_id=WP_160199346.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2718272 2718664 . + . ID=gene-LPH39_RS11365;Name=LPH39_RS11365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11365;old_locus_tag=LPH39_11365 NZ_CP087677.1 Protein Homology CDS 2718272 2718664 . + 0 ID=cds-WP_069636218.1;Parent=gene-LPH39_RS11365;Dbxref=Genbank:WP_069636218.1;Name=WP_069636218.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090296.1;locus_tag=LPH39_RS11365;product=hypothetical protein;protein_id=WP_069636218.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2718648 2719403 . + . ID=gene-LPH39_RS11370;Name=LPH39_RS11370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11370;old_locus_tag=LPH39_11370 NZ_CP087677.1 GeneMarkS-2+ CDS 2718648 2719403 . + 0 ID=cds-WP_038272153.1;Parent=gene-LPH39_RS11370;Dbxref=Genbank:WP_038272153.1;Name=WP_038272153.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11370;product=VWA domain-containing protein;protein_id=WP_038272153.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2719396 2719908 . + . ID=gene-LPH39_RS11375;Name=LPH39_RS11375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11375;old_locus_tag=LPH39_11375 NZ_CP087677.1 Protein Homology CDS 2719396 2719908 . + 0 ID=cds-WP_038272154.1;Parent=gene-LPH39_RS11375;Dbxref=Genbank:WP_038272154.1;Name=WP_038272154.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894567.1;locus_tag=LPH39_RS11375;product=hypothetical protein;protein_id=WP_038272154.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2719911 2720330 . + . ID=gene-LPH39_RS11380;Name=LPH39_RS11380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11380;old_locus_tag=LPH39_11380 NZ_CP087677.1 Protein Homology CDS 2719911 2720330 . + 0 ID=cds-WP_038272155.1;Parent=gene-LPH39_RS11380;Dbxref=Genbank:WP_038272155.1;Name=WP_038272155.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083636.1;locus_tag=LPH39_RS11380;product=hypothetical protein;protein_id=WP_038272155.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2720682 2721077 . - . ID=gene-LPH39_RS11385;Name=LPH39_RS11385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11385;old_locus_tag=LPH39_11385 NZ_CP087677.1 Protein Homology CDS 2720682 2721077 . - 0 ID=cds-WP_038272158.1;Parent=gene-LPH39_RS11385;Dbxref=Genbank:WP_038272158.1;Name=WP_038272158.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1;locus_tag=LPH39_RS11385;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_038272158.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2721074 2721340 . - . ID=gene-LPH39_RS11390;Name=LPH39_RS11390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11390;old_locus_tag=LPH39_11390 NZ_CP087677.1 Protein Homology CDS 2721074 2721340 . - 0 ID=cds-WP_038272159.1;Parent=gene-LPH39_RS11390;Dbxref=Genbank:WP_038272159.1;Name=WP_038272159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852902.1;locus_tag=LPH39_RS11390;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_038272159.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2721458 2721898 . - . ID=gene-LPH39_RS11395;Name=LPH39_RS11395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11395;old_locus_tag=LPH39_11395 NZ_CP087677.1 Protein Homology CDS 2721458 2721898 . - 0 ID=cds-WP_069636219.1;Parent=gene-LPH39_RS11395;Dbxref=Genbank:WP_069636219.1;Name=WP_069636219.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023888.2;locus_tag=LPH39_RS11395;product=DUF3693 domain-containing protein;protein_id=WP_069636219.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2722043 2722303 . + . ID=gene-LPH39_RS11400;Name=LPH39_RS11400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11400;old_locus_tag=LPH39_11400 NZ_CP087677.1 GeneMarkS-2+ CDS 2722043 2722303 . + 0 ID=cds-WP_152536649.1;Parent=gene-LPH39_RS11400;Dbxref=Genbank:WP_152536649.1;Name=WP_152536649.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11400;product=hypothetical protein;protein_id=WP_152536649.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2722334 2722516 . + . ID=gene-LPH39_RS11405;Name=LPH39_RS11405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11405;old_locus_tag=LPH39_11405 NZ_CP087677.1 Protein Homology CDS 2722334 2722516 . + 0 ID=cds-WP_114867114.1;Parent=gene-LPH39_RS11405;Dbxref=Genbank:WP_114867114.1;Name=WP_114867114.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853101.1;locus_tag=LPH39_RS11405;product=hypothetical protein;protein_id=WP_114867114.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2722947 2724095 . + . ID=gene-LPH39_RS11410;Name=LPH39_RS11410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11410;old_locus_tag=LPH39_11410 NZ_CP087677.1 Protein Homology CDS 2722947 2724095 . + 0 ID=cds-WP_038273097.1-2;Parent=gene-LPH39_RS11410;Dbxref=Genbank:WP_038273097.1;Name=WP_038273097.1;Ontology_term=GO:0006270,GO:0003677,GO:0003916;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA replication initiation|0006270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853102.1;locus_tag=LPH39_RS11410;product=replication initiation factor domain-containing protein;protein_id=WP_038273097.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2724141 2724434 . + . ID=gene-LPH39_RS11415;Name=LPH39_RS11415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11415;old_locus_tag=LPH39_11415 NZ_CP087677.1 Protein Homology CDS 2724141 2724434 . + 0 ID=cds-WP_038273093.1-2;Parent=gene-LPH39_RS11415;Dbxref=Genbank:WP_038273093.1;Name=WP_038273093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097860.1;locus_tag=LPH39_RS11415;product=single-stranded DNA-binding protein;protein_id=WP_038273093.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2724434 2724643 . + . ID=gene-LPH39_RS11420;Name=LPH39_RS11420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11420;old_locus_tag=LPH39_11420 NZ_CP087677.1 Protein Homology CDS 2724434 2724643 . + 0 ID=cds-WP_230428208.1-2;Parent=gene-LPH39_RS11420;Dbxref=Genbank:WP_230428208.1;Name=WP_230428208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382571.1;locus_tag=LPH39_RS11420;product=hypothetical protein;protein_id=WP_230428208.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2724652 2724870 . + . ID=gene-LPH39_RS11425;Name=LPH39_RS11425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11425;old_locus_tag=LPH39_11425 NZ_CP087677.1 Protein Homology CDS 2724652 2724870 . + 0 ID=cds-WP_051482398.1-2;Parent=gene-LPH39_RS11425;Dbxref=Genbank:WP_051482398.1;Name=WP_051482398.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017194.2;locus_tag=LPH39_RS11425;product=major capsid protein;protein_id=WP_051482398.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2725338 2726405 . + . ID=gene-LPH39_RS11430;Name=LPH39_RS11430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11430;old_locus_tag=LPH39_11430 NZ_CP087677.1 Protein Homology CDS 2725338 2726405 . + 0 ID=cds-WP_152536670.1-2;Parent=gene-LPH39_RS11430;Dbxref=Genbank:WP_152536670.1;Name=WP_152536670.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF041109.1;locus_tag=LPH39_RS11430;product=virulence factor TspB C-terminal domain-related protein;protein_id=WP_152536670.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2726409 2726750 . + . ID=gene-LPH39_RS11435;Name=LPH39_RS11435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11435;old_locus_tag=LPH39_11435 NZ_CP087677.1 Protein Homology CDS 2726409 2726750 . + 0 ID=cds-WP_038273089.1-2;Parent=gene-LPH39_RS11435;Dbxref=Genbank:WP_038273089.1;Name=WP_038273089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097845.1;locus_tag=LPH39_RS11435;product=DUF2523 family protein;protein_id=WP_038273089.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2726750 2727898 . + . ID=gene-LPH39_RS11440;Name=LPH39_RS11440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11440;old_locus_tag=LPH39_11440 NZ_CP087677.1 Protein Homology CDS 2726750 2727898 . + 0 ID=cds-WP_069636227.1-2;Parent=gene-LPH39_RS11440;Dbxref=Genbank:WP_069636227.1;Name=WP_069636227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382577.1;locus_tag=LPH39_RS11440;product=hypothetical protein;protein_id=WP_069636227.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2727903 2728259 . - . ID=gene-LPH39_RS11445;Name=LPH39_RS11445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11445;old_locus_tag=LPH39_11445 NZ_CP087677.1 Protein Homology CDS 2727903 2728259 . - 0 ID=cds-WP_200866198.1;Parent=gene-LPH39_RS11445;Dbxref=Genbank:WP_200866198.1;Name=WP_200866198.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051576.1;locus_tag=LPH39_RS11445;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_200866198.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2728202 2728474 . - . ID=gene-LPH39_RS11450;Name=LPH39_RS11450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11450;old_locus_tag=LPH39_11450 NZ_CP087677.1 Protein Homology CDS 2728202 2728474 . - 0 ID=cds-WP_038271292.1;Parent=gene-LPH39_RS11450;Dbxref=Genbank:WP_038271292.1;Name=WP_038271292.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004371118.1;locus_tag=LPH39_RS11450;product=CopG family ribbon-helix-helix protein;protein_id=WP_038271292.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2728816 2729688 . + . ID=gene-LPH39_RS11455;Name=LPH39_RS11455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11455;old_locus_tag=LPH39_11455 NZ_CP087677.1 Protein Homology CDS 2728816 2729688 . + 0 ID=cds-WP_051482318.1;Parent=gene-LPH39_RS11455;Dbxref=Genbank:WP_051482318.1;Name=WP_051482318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087203.1;locus_tag=LPH39_RS11455;product=site-specific integrase;protein_id=WP_051482318.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2729701 2730093 . - . ID=gene-LPH39_RS11460;Name=LPH39_RS11460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11460;old_locus_tag=LPH39_11460 NZ_CP087677.1 GeneMarkS-2+ CDS 2729701 2730093 . - 0 ID=cds-WP_051482319.1;Parent=gene-LPH39_RS11460;Dbxref=Genbank:WP_051482319.1;Name=WP_051482319.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11460;product=hypothetical protein;protein_id=WP_051482319.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2730280 2730438 . - . ID=gene-LPH39_RS11465;Name=LPH39_RS11465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11465;old_locus_tag=LPH39_11465 NZ_CP087677.1 GeneMarkS-2+ CDS 2730280 2730438 . - 0 ID=cds-WP_160165178.1;Parent=gene-LPH39_RS11465;Dbxref=Genbank:WP_160165178.1;Name=WP_160165178.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11465;product=hypothetical protein;protein_id=WP_160165178.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2730435 2731013 . - . ID=gene-LPH39_RS11470;Name=LPH39_RS11470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11470;old_locus_tag=LPH39_11470 NZ_CP087677.1 Protein Homology CDS 2730435 2731013 . - 0 ID=cds-WP_081755441.1;Parent=gene-LPH39_RS11470;Dbxref=Genbank:WP_081755441.1;Name=WP_081755441.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086808.1;locus_tag=LPH39_RS11470;product=lysozyme;protein_id=WP_081755441.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2731029 2731241 . - . ID=gene-LPH39_RS11475;Name=LPH39_RS11475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11475;old_locus_tag=LPH39_11475 NZ_CP087677.1 Protein Homology CDS 2731029 2731241 . - 0 ID=cds-WP_038271294.1;Parent=gene-LPH39_RS11475;Dbxref=Genbank:WP_038271294.1;Name=WP_038271294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086826.1;locus_tag=LPH39_RS11475;product=hypothetical protein;protein_id=WP_038271294.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2731319 2731693 . - . ID=gene-LPH39_RS11480;Name=LPH39_RS11480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11480;old_locus_tag=LPH39_11480 NZ_CP087677.1 Protein Homology CDS 2731319 2731693 . - 0 ID=cds-WP_038271295.1;Parent=gene-LPH39_RS11480;Dbxref=Genbank:WP_038271295.1;Name=WP_038271295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893040.1;locus_tag=LPH39_RS11480;product=DUF2190 family protein;protein_id=WP_038271295.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2731756 2734011 . - . ID=gene-LPH39_RS11485;Name=LPH39_RS11485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11485;old_locus_tag=LPH39_11485 NZ_CP087677.1 Protein Homology CDS 2731756 2734011 . - 0 ID=cds-WP_081755442.1;Parent=gene-LPH39_RS11485;Dbxref=Genbank:WP_081755442.1;Name=WP_081755442.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851147.1;locus_tag=LPH39_RS11485;product=Clp protease ClpP;protein_id=WP_081755442.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2734008 2735567 . - . ID=gene-LPH39_RS11490;Name=LPH39_RS11490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11490;old_locus_tag=LPH39_11490 NZ_CP087677.1 Protein Homology CDS 2734008 2735567 . - 0 ID=cds-WP_038271296.1;Parent=gene-LPH39_RS11490;Dbxref=Genbank:WP_038271296.1;Name=WP_038271296.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086805.1;locus_tag=LPH39_RS11490;product=phage portal protein;protein_id=WP_038271296.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2735564 2735779 . - . ID=gene-LPH39_RS11495;Name=LPH39_RS11495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11495;old_locus_tag=LPH39_11495 NZ_CP087677.1 Protein Homology CDS 2735564 2735779 . - 0 ID=cds-WP_038271297.1;Parent=gene-LPH39_RS11495;Dbxref=Genbank:WP_038271297.1;Name=WP_038271297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337727.1;locus_tag=LPH39_RS11495;product=hypothetical protein;protein_id=WP_038271297.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2735974 2736300 . + . ID=gene-LPH39_RS11500;Name=LPH39_RS11500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11500;old_locus_tag=LPH39_11500 NZ_CP087677.1 Protein Homology CDS 2735974 2736300 . + 0 ID=cds-WP_038271298.1;Parent=gene-LPH39_RS11500;Dbxref=Genbank:WP_038271298.1;Name=WP_038271298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011798663.1;locus_tag=LPH39_RS11500;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_038271298.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2736394 2736708 . + . ID=gene-LPH39_RS11505;Name=LPH39_RS11505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11505;old_locus_tag=LPH39_11505 NZ_CP087677.1 Protein Homology CDS 2736394 2736708 . + 0 ID=cds-WP_038271299.1;Parent=gene-LPH39_RS11505;Dbxref=Genbank:WP_038271299.1;Name=WP_038271299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004167230.1;locus_tag=LPH39_RS11505;product=addiction module antidote protein;protein_id=WP_038271299.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2736851 2737105 . - . ID=gene-LPH39_RS11510;Name=LPH39_RS11510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11510;old_locus_tag=LPH39_11510 NZ_CP087677.1 Protein Homology CDS 2736851 2737105 . - 0 ID=cds-WP_200866200.1;Parent=gene-LPH39_RS11510;Dbxref=Genbank:WP_200866200.1;Name=WP_200866200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011342941.1;locus_tag=LPH39_RS11510;product=antitoxin of toxin-antitoxin stability system;protein_id=WP_200866200.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2737806 2738057 . + . ID=gene-LPH39_RS11515;Name=LPH39_RS11515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11515;old_locus_tag=LPH39_11515 NZ_CP087677.1 Protein Homology CDS 2737806 2738057 . + 0 ID=cds-WP_038271367.1;Parent=gene-LPH39_RS11515;Dbxref=Genbank:WP_038271367.1;Name=WP_038271367.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1;locus_tag=LPH39_RS11515;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_038271367.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2738054 2738452 . + . ID=gene-LPH39_RS11520;Name=LPH39_RS11520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11520;old_locus_tag=LPH39_11520 NZ_CP087677.1 Protein Homology CDS 2738054 2738452 . + 0 ID=cds-WP_038271302.1;Parent=gene-LPH39_RS11520;Dbxref=Genbank:WP_038271302.1;Name=WP_038271302.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1;locus_tag=LPH39_RS11520;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_038271302.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2740144 2740449 . - . ID=gene-LPH39_RS11525;Name=LPH39_RS11525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11525;old_locus_tag=LPH39_11525 NZ_CP087677.1 Protein Homology CDS 2740144 2740449 . - 0 ID=cds-WP_051482325.1;Parent=gene-LPH39_RS11525;Dbxref=Genbank:WP_051482325.1;Name=WP_051482325.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997832.1;locus_tag=LPH39_RS11525;product=metalloregulator ArsR/SmtB family transcription factor;protein_id=WP_051482325.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2740479 2740841 . - . ID=gene-LPH39_RS11530;Name=LPH39_RS11530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11530;old_locus_tag=LPH39_11530 NZ_CP087677.1 Protein Homology CDS 2740479 2740841 . - 0 ID=cds-WP_051482320.1;Parent=gene-LPH39_RS11530;Dbxref=Genbank:WP_051482320.1;Name=WP_051482320.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009579511.1;locus_tag=LPH39_RS11530;product=rhodanese-like domain-containing protein;protein_id=WP_051482320.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2740974 2742689 . + . ID=gene-LPH39_RS11535;Name=LPH39_RS11535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11535;old_locus_tag=LPH39_11535 NZ_CP087677.1 Protein Homology CDS 2740974 2742689 . + 0 ID=cds-WP_051482321.1;Parent=gene-LPH39_RS11535;Dbxref=Genbank:WP_051482321.1;Name=WP_051482321.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: protein motif:HMM:TIGR01730.1;locus_tag=LPH39_RS11535;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_051482321.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2742682 2745945 . + . ID=gene-LPH39_RS11540;Name=LPH39_RS11540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11540;old_locus_tag=LPH39_11540 NZ_CP087677.1 Protein Homology CDS 2742682 2745945 . + 0 ID=cds-WP_038271305.1;Parent=gene-LPH39_RS11540;Dbxref=Genbank:WP_038271305.1;Name=WP_038271305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017917373.1;locus_tag=LPH39_RS11540;product=efflux RND transporter permease subunit;protein_id=WP_038271305.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2746226 2747395 . - . ID=gene-LPH39_RS11545;Name=LPH39_RS11545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11545;old_locus_tag=LPH39_11545 NZ_CP087677.1 Protein Homology CDS 2746226 2747395 . - 0 ID=cds-WP_038271306.1;Parent=gene-LPH39_RS11545;Dbxref=Genbank:WP_038271306.1;Name=WP_038271306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089406.1;locus_tag=LPH39_RS11545;product=porphyrin biosynthesis protein;protein_id=WP_038271306.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2747392 2748372 . - . ID=gene-LPH39_RS11550;Name=LPH39_RS11550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11550;old_locus_tag=LPH39_11550 NZ_CP087677.1 Protein Homology CDS 2747392 2748372 . - 0 ID=cds-WP_038271307.1;Parent=gene-LPH39_RS11550;Dbxref=Genbank:WP_038271307.1;Name=WP_038271307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488502.1;locus_tag=LPH39_RS11550;product=uroporphyrinogen-III C-methyltransferase;protein_id=WP_038271307.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2748420 2749193 . - . ID=gene-LPH39_RS11555;Name=LPH39_RS11555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11555;old_locus_tag=LPH39_11555 NZ_CP087677.1 Protein Homology CDS 2748420 2749193 . - 0 ID=cds-WP_038271371.1;Parent=gene-LPH39_RS11555;Dbxref=Genbank:WP_038271371.1;Name=WP_038271371.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370608.1;locus_tag=LPH39_RS11555;product=uroporphyrinogen-III synthase;protein_id=WP_038271371.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2749337 2749774 . + . ID=gene-LPH39_RS11560;Name=LPH39_RS11560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11560;old_locus_tag=LPH39_11560 NZ_CP087677.1 Protein Homology CDS 2749337 2749774 . + 0 ID=cds-WP_038271308.1;Parent=gene-LPH39_RS11560;Dbxref=Genbank:WP_038271308.1;Name=WP_038271308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089413.1;locus_tag=LPH39_RS11560;product=hypothetical protein;protein_id=WP_038271308.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2749851 2750288 . + . ID=gene-LPH39_RS11565;Name=LPH39_RS11565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11565;old_locus_tag=LPH39_11565 NZ_CP087677.1 Protein Homology CDS 2749851 2750288 . + 0 ID=cds-WP_038271309.1;Parent=gene-LPH39_RS11565;Dbxref=Genbank:WP_038271309.1;Name=WP_038271309.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084894.1;locus_tag=LPH39_RS11565;product=rhodanese-like domain-containing protein;protein_id=WP_038271309.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2750405 2750923 . + . ID=gene-LPH39_RS11570;Name=secB;gbkey=Gene;gene=secB;gene_biotype=protein_coding;locus_tag=LPH39_RS11570;old_locus_tag=LPH39_11570 NZ_CP087677.1 Protein Homology CDS 2750405 2750923 . + 0 ID=cds-WP_038271310.1;Parent=gene-LPH39_RS11570;Dbxref=Genbank:WP_038271310.1;Name=WP_038271310.1;gbkey=CDS;gene=secB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894270.1;locus_tag=LPH39_RS11570;product=protein-export chaperone SecB;protein_id=WP_038271310.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2750945 2751994 . + . ID=gene-LPH39_RS11575;Name=LPH39_RS11575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11575;old_locus_tag=LPH39_11575 NZ_CP087677.1 Protein Homology CDS 2750945 2751994 . + 0 ID=cds-WP_038271311.1;Parent=gene-LPH39_RS11575;Dbxref=Genbank:WP_038271311.1;Name=WP_038271311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572788.1;locus_tag=LPH39_RS11575;product=NAD(P)-dependent glycerol-3-phosphate dehydrogenase;protein_id=WP_038271311.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2752145 2752717 . - . ID=gene-LPH39_RS11580;Name=LPH39_RS11580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11580;old_locus_tag=LPH39_11580 NZ_CP087677.1 Protein Homology CDS 2752145 2752717 . - 0 ID=cds-WP_038271312.1;Parent=gene-LPH39_RS11580;Dbxref=Genbank:WP_038271312.1;Name=WP_038271312.1;Ontology_term=GO:0009372;gbkey=CDS;go_process=quorum sensing|0009372||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451122.1;locus_tag=LPH39_RS11580;product=Ax21 family protein;protein_id=WP_038271312.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2753448 2753684 . + . ID=gene-LPH39_RS11585;Name=LPH39_RS11585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11585;old_locus_tag=LPH39_11585 NZ_CP087677.1 GeneMarkS-2+ CDS 2753448 2753684 . + 0 ID=cds-WP_152536622.1;Parent=gene-LPH39_RS11585;Dbxref=Genbank:WP_152536622.1;Name=WP_152536622.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11585;product=hypothetical protein;protein_id=WP_152536622.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2754410 2754571 . + . ID=gene-LPH39_RS11590;Name=LPH39_RS11590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11590;old_locus_tag=LPH39_11590 NZ_CP087677.1 GeneMarkS-2+ CDS 2754410 2754571 . + 0 ID=cds-WP_160165179.1;Parent=gene-LPH39_RS11590;Dbxref=Genbank:WP_160165179.1;Name=WP_160165179.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11590;product=hypothetical protein;protein_id=WP_160165179.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2755776 2755931 . - . ID=gene-LPH39_RS11595;Name=LPH39_RS11595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11595;old_locus_tag=LPH39_11595 NZ_CP087677.1 GeneMarkS-2+ CDS 2755776 2755931 . - 0 ID=cds-WP_160165180.1;Parent=gene-LPH39_RS11595;Dbxref=Genbank:WP_160165180.1;Name=WP_160165180.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11595;product=hypothetical protein;protein_id=WP_160165180.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2756407 2756499 . - . ID=gene-LPH39_RS11600;Name=LPH39_RS11600;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH39_RS11600;old_locus_tag=LPH39_11600 NZ_CP087677.1 tRNAscan-SE tRNA 2756407 2756499 . - . ID=rna-LPH39_RS11600;Parent=gene-LPH39_RS11600;anticodon=(pos:complement(2756463..2756465));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS11600;product=tRNA-Ser NZ_CP087677.1 tRNAscan-SE exon 2756407 2756499 . - . ID=exon-LPH39_RS11600-1;Parent=rna-LPH39_RS11600;anticodon=(pos:complement(2756463..2756465));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH39_RS11600;product=tRNA-Ser NZ_CP087677.1 RefSeq gene 2756646 2758538 . + . ID=gene-LPH39_RS11605;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=LPH39_RS11605;old_locus_tag=LPH39_11605 NZ_CP087677.1 Protein Homology CDS 2756646 2758538 . + 0 ID=cds-WP_038271314.1;Parent=gene-LPH39_RS11605;Dbxref=Genbank:WP_038271314.1;Name=WP_038271314.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0005524,GO:0009360;gbkey=CDS;gene=dnaX;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155800.1;locus_tag=LPH39_RS11605;product=DNA polymerase III subunit gamma/tau;protein_id=WP_038271314.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2758545 2758865 . + . ID=gene-LPH39_RS11610;Name=LPH39_RS11610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11610;old_locus_tag=LPH39_11610 NZ_CP087677.1 Protein Homology CDS 2758545 2758865 . + 0 ID=cds-WP_038271372.1;Parent=gene-LPH39_RS11610;Dbxref=Genbank:WP_038271372.1;Name=WP_038271372.1;Ontology_term=GO:0008150,GO:0003677,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346622.1;locus_tag=LPH39_RS11610;product=YbaB/EbfC family nucleoid-associated protein;protein_id=WP_038271372.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2759051 2759647 . + . ID=gene-LPH39_RS11615;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=LPH39_RS11615;old_locus_tag=LPH39_11615 NZ_CP087677.1 Protein Homology CDS 2759051 2759647 . + 0 ID=cds-WP_038271315.1;Parent=gene-LPH39_RS11615;Dbxref=Genbank:WP_038271315.1;Name=WP_038271315.1;Ontology_term=GO:0006281,GO:0006310;gbkey=CDS;gene=recR;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483843.1;locus_tag=LPH39_RS11615;product=recombination mediator RecR;protein_id=WP_038271315.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2759724 2760068 . + . ID=gene-LPH39_RS11620;Name=LPH39_RS11620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11620;old_locus_tag=LPH39_11620 NZ_CP087677.1 Protein Homology CDS 2759724 2760068 . + 0 ID=cds-WP_038271316.1;Parent=gene-LPH39_RS11620;Dbxref=Genbank:WP_038271316.1;Name=WP_038271316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894278.1;locus_tag=LPH39_RS11620;product=histidine triad nucleotide-binding protein;protein_id=WP_038271316.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2760137 2760658 . - . ID=gene-LPH39_RS11625;Name=LPH39_RS11625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11625;old_locus_tag=LPH39_11625 NZ_CP087677.1 Protein Homology CDS 2760137 2760658 . - 0 ID=cds-WP_038271317.1;Parent=gene-LPH39_RS11625;Dbxref=Genbank:WP_038271317.1;Name=WP_038271317.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920486.1;locus_tag=LPH39_RS11625;product=Slp family lipoprotein;protein_id=WP_038271317.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2760552 2762597 . - . ID=gene-LPH39_RS11630;Name=LPH39_RS11630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11630;old_locus_tag=LPH39_11630 NZ_CP087677.1 Protein Homology CDS 2760552 2762597 . - 0 ID=cds-WP_038271318.1;Parent=gene-LPH39_RS11630;Dbxref=Genbank:WP_038271318.1;Name=WP_038271318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572798.1;locus_tag=LPH39_RS11630;product=DUF3488 and transglutaminase-like domain-containing protein;protein_id=WP_038271318.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2762590 2763549 . - . ID=gene-LPH39_RS11635;Name=LPH39_RS11635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11635;old_locus_tag=LPH39_11635 NZ_CP087677.1 Protein Homology CDS 2762590 2763549 . - 0 ID=cds-WP_038271319.1;Parent=gene-LPH39_RS11635;Dbxref=Genbank:WP_038271319.1;Name=WP_038271319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850007.1;locus_tag=LPH39_RS11635;product=DUF58 domain-containing protein;protein_id=WP_038271319.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2763552 2764511 . - . ID=gene-LPH39_RS11640;Name=LPH39_RS11640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11640;old_locus_tag=LPH39_11640 NZ_CP087677.1 Protein Homology CDS 2763552 2764511 . - 0 ID=cds-WP_114867219.1;Parent=gene-LPH39_RS11640;Dbxref=Genbank:WP_114867219.1;Name=WP_114867219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502249.1;locus_tag=LPH39_RS11640;product=MoxR family ATPase;protein_id=WP_114867219.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2764539 2766368 . + . ID=gene-LPH39_RS11645;Name=LPH39_RS11645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11645;old_locus_tag=LPH39_11645 NZ_CP087677.1 Protein Homology CDS 2764539 2766368 . + 0 ID=cds-WP_171898081.1;Parent=gene-LPH39_RS11645;Dbxref=Genbank:WP_171898081.1;Name=WP_171898081.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115355.1;locus_tag=LPH39_RS11645;product=glycosyltransferase family 39 protein;protein_id=WP_171898081.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2766877 2767386 . + . ID=gene-LPH39_RS11650;Name=LPH39_RS11650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11650;old_locus_tag=LPH39_11650 NZ_CP087677.1 Protein Homology CDS 2766877 2767386 . + 0 ID=cds-WP_038271323.1;Parent=gene-LPH39_RS11650;Dbxref=Genbank:WP_038271323.1;Name=WP_038271323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814328.1;locus_tag=LPH39_RS11650;product=YceD family protein;protein_id=WP_038271323.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2767485 2767679 . + . ID=gene-LPH39_RS11655;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=LPH39_RS11655;old_locus_tag=LPH39_11655 NZ_CP087677.1 Protein Homology CDS 2767485 2767679 . + 0 ID=cds-WP_038271324.1;Parent=gene-LPH39_RS11655;Dbxref=Genbank:WP_038271324.1;Name=WP_038271324.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmF;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302036.1;locus_tag=LPH39_RS11655;product=50S ribosomal protein L32;protein_id=WP_038271324.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2767777 2768751 . + . ID=gene-LPH39_RS11660;Name=LPH39_RS11660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11660;old_locus_tag=LPH39_11660 NZ_CP087677.1 Protein Homology CDS 2767777 2768751 . + 0 ID=cds-WP_038271325.1;Parent=gene-LPH39_RS11660;Dbxref=Genbank:WP_038271325.1;Name=WP_038271325.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502254.1;locus_tag=LPH39_RS11660;product=ketoacyl-ACP synthase III;protein_id=WP_038271325.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2768996 2769229 . - . ID=gene-LPH39_RS11665;Name=LPH39_RS11665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11665;old_locus_tag=LPH39_11665 NZ_CP087677.1 Protein Homology CDS 2768996 2769229 . - 0 ID=cds-WP_038271326.1;Parent=gene-LPH39_RS11665;Dbxref=Genbank:WP_038271326.1;Name=WP_038271326.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013676.2;locus_tag=LPH39_RS11665;product=hypothetical protein;protein_id=WP_038271326.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2770287 2770478 . - . ID=gene-LPH39_RS11670;Name=LPH39_RS11670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11670;old_locus_tag=LPH39_11670 NZ_CP087677.1 GeneMarkS-2+ CDS 2770287 2770478 . - 0 ID=cds-WP_081755444.1;Parent=gene-LPH39_RS11670;Dbxref=Genbank:WP_081755444.1;Name=WP_081755444.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11670;product=hypothetical protein;protein_id=WP_081755444.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2771288 2773255 . - . ID=gene-LPH39_RS11675;Name=LPH39_RS11675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11675;old_locus_tag=LPH39_11675 NZ_CP087677.1 Protein Homology CDS 2771288 2773255 . - 0 ID=cds-WP_069636213.1;Parent=gene-LPH39_RS11675;Dbxref=Genbank:WP_069636213.1;Name=WP_069636213.1;Ontology_term=GO:0030245,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=cellulose catabolic process|0030245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084038.1;locus_tag=LPH39_RS11675;product=glycoside hydrolase family 6 protein;protein_id=WP_069636213.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2774546 2776105 . - . ID=gene-LPH39_RS11680;Name=LPH39_RS11680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11680;old_locus_tag=LPH39_11680 NZ_CP087677.1 Protein Homology CDS 2774546 2776105 . - 0 ID=cds-WP_038271330.1;Parent=gene-LPH39_RS11680;Dbxref=Genbank:WP_038271330.1;Name=WP_038271330.1;Ontology_term=GO:0009098,GO:0019752,GO:0003852;gbkey=CDS;go_function=2-isopropylmalate synthase activity|0003852||IEA;go_process=leucine biosynthetic process|0009098||IEA,carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156818.1;locus_tag=LPH39_RS11680;product=2-isopropylmalate synthase;protein_id=WP_038271330.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2776160 2777212 . - . ID=gene-LPH39_RS11685;Name=LPH39_RS11685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11685;old_locus_tag=LPH39_11685 NZ_CP087677.1 Protein Homology CDS 2776160 2777212 . - 0 ID=cds-WP_038271331.1;Parent=gene-LPH39_RS11685;Dbxref=Genbank:WP_038271331.1;Name=WP_038271331.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572807.1;locus_tag=LPH39_RS11685;product=threonine dehydratase;protein_id=WP_038271331.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2777330 2777575 . - . ID=gene-LPH39_RS11690;Name=LPH39_RS11690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11690;old_locus_tag=LPH39_11690 NZ_CP087677.1 Protein Homology CDS 2777330 2777575 . - 0 ID=cds-WP_038271332.1;Parent=gene-LPH39_RS11690;Dbxref=Genbank:WP_038271332.1;Name=WP_038271332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084875.1;locus_tag=LPH39_RS11690;product=acetolactate synthase;protein_id=WP_038271332.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2777559 2779316 . - . ID=gene-LPH39_RS11695;Name=ilvG;gbkey=Gene;gene=ilvG;gene_biotype=protein_coding;locus_tag=LPH39_RS11695;old_locus_tag=LPH39_11695 NZ_CP087677.1 Protein Homology CDS 2777559 2779316 . - 0 ID=cds-WP_038271333.1;Parent=gene-LPH39_RS11695;Dbxref=Genbank:WP_038271333.1;Name=WP_038271333.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvG;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804901.1;locus_tag=LPH39_RS11695;product=acetolactate synthase 2 catalytic subunit;protein_id=WP_038271333.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2779362 2780369 . - . ID=gene-LPH39_RS11700;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;locus_tag=LPH39_RS11700;old_locus_tag=LPH39_11700 NZ_CP087677.1 Protein Homology CDS 2779362 2780369 . - 0 ID=cds-WP_038271334.1;Parent=gene-LPH39_RS11700;Dbxref=Genbank:WP_038271334.1;Name=WP_038271334.1;gbkey=CDS;gene=ilvC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852238.1;locus_tag=LPH39_RS11700;product=ketol-acid reductoisomerase;protein_id=WP_038271334.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2781522 2783705 . - . ID=gene-LPH39_RS11705;Name=LPH39_RS11705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11705;old_locus_tag=LPH39_11705 NZ_CP087677.1 Protein Homology CDS 2781522 2783705 . - 0 ID=cds-WP_038271335.1;Parent=gene-LPH39_RS11705;Dbxref=Genbank:WP_038271335.1;Name=WP_038271335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482716.1;locus_tag=LPH39_RS11705;product=carboxy terminal-processing peptidase;protein_id=WP_038271335.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2784701 2785690 . - . ID=gene-LPH39_RS11710;Name=LPH39_RS11710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11710;old_locus_tag=LPH39_11710 NZ_CP087677.1 Protein Homology CDS 2784701 2785690 . - 0 ID=cds-WP_038271336.1;Parent=gene-LPH39_RS11710;Dbxref=Genbank:WP_038271336.1;Name=WP_038271336.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084871.1;locus_tag=LPH39_RS11710;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_038271336.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2786077 2786508 . - . ID=gene-LPH39_RS11715;Name=LPH39_RS11715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11715;old_locus_tag=LPH39_11715 NZ_CP087677.1 Protein Homology CDS 2786077 2786508 . - 0 ID=cds-WP_038271337.1;Parent=gene-LPH39_RS11715;Dbxref=Genbank:WP_038271337.1;Name=WP_038271337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084870.1;locus_tag=LPH39_RS11715;product=organic hydroperoxide resistance protein;protein_id=WP_038271337.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2787010 2788182 . - . ID=gene-LPH39_RS11720;Name=zapE;gbkey=Gene;gene=zapE;gene_biotype=protein_coding;locus_tag=LPH39_RS11720;old_locus_tag=LPH39_11720 NZ_CP087677.1 Protein Homology CDS 2787010 2788182 . - 0 ID=cds-WP_038271338.1;Parent=gene-LPH39_RS11720;Dbxref=Genbank:WP_038271338.1;Name=WP_038271338.1;Ontology_term=GO:0051301,GO:0005524,GO:0016887;gbkey=CDS;gene=zapE;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974994.1;locus_tag=LPH39_RS11720;product=cell division protein ZapE;protein_id=WP_038271338.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2788227 2788889 . - . ID=gene-LPH39_RS11725;Name=LPH39_RS11725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11725;old_locus_tag=LPH39_11725 NZ_CP087677.1 Protein Homology CDS 2788227 2788889 . - 0 ID=cds-WP_038271377.1;Parent=gene-LPH39_RS11725;Dbxref=Genbank:WP_038271377.1;Name=WP_038271377.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035515.1;locus_tag=LPH39_RS11725;product=alpha/beta hydrolase;protein_id=WP_038271377.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2789228 2790556 . - . ID=gene-LPH39_RS11730;Name=LPH39_RS11730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11730;old_locus_tag=LPH39_11730 NZ_CP087677.1 Protein Homology CDS 2789228 2790556 . - 0 ID=cds-WP_038271339.1;Parent=gene-LPH39_RS11730;Dbxref=Genbank:WP_038271339.1;Name=WP_038271339.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851403.1;locus_tag=LPH39_RS11730;product=GTP-binding protein;protein_id=WP_038271339.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2791026 2791190 . - . ID=gene-LPH39_RS11735;Name=LPH39_RS11735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11735;old_locus_tag=LPH39_11735 NZ_CP087677.1 GeneMarkS-2+ CDS 2791026 2791190 . - 0 ID=cds-WP_114867124.1;Parent=gene-LPH39_RS11735;Dbxref=Genbank:WP_114867124.1;Name=WP_114867124.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11735;product=transposase;protein_id=WP_114867124.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2791507 2792358 . - . ID=gene-LPH39_RS11740;Name=purU;gbkey=Gene;gene=purU;gene_biotype=protein_coding;locus_tag=LPH39_RS11740;old_locus_tag=LPH39_11740 NZ_CP087677.1 Protein Homology CDS 2791507 2792358 . - 0 ID=cds-WP_038271340.1;Parent=gene-LPH39_RS11740;Dbxref=Genbank:WP_038271340.1;Name=WP_038271340.1;Ontology_term=GO:0009152,GO:0008864;gbkey=CDS;gene=purU;go_function=formyltetrahydrofolate deformylase activity|0008864||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237160.1;locus_tag=LPH39_RS11740;product=formyltetrahydrofolate deformylase;protein_id=WP_038271340.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2793279 2793926 . + . ID=gene-LPH39_RS11745;Name=LPH39_RS11745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11745;old_locus_tag=LPH39_11745 NZ_CP087677.1 Protein Homology CDS 2793279 2793926 . + 0 ID=cds-WP_038271341.1;Parent=gene-LPH39_RS11745;Dbxref=Genbank:WP_038271341.1;Name=WP_038271341.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894298.1;locus_tag=LPH39_RS11745;product=SCP2 sterol-binding domain-containing protein;protein_id=WP_038271341.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2793923 2795581 . + . ID=gene-LPH39_RS11750;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;locus_tag=LPH39_RS11750;old_locus_tag=LPH39_11750 NZ_CP087677.1 Protein Homology CDS 2793923 2795581 . + 0 ID=cds-WP_038271342.1;Parent=gene-LPH39_RS11750;Dbxref=Genbank:WP_038271342.1;Name=WP_038271342.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiB;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084864.1;locus_tag=LPH39_RS11750;product=ubiquinone biosynthesis regulatory protein kinase UbiB;protein_id=WP_038271342.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2795770 2796231 . - . ID=gene-LPH39_RS11755;Name=LPH39_RS11755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11755;old_locus_tag=LPH39_11755 NZ_CP087677.1 Protein Homology CDS 2795770 2796231 . - 0 ID=cds-WP_038271343.1;Parent=gene-LPH39_RS11755;Dbxref=Genbank:WP_038271343.1;Name=WP_038271343.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894300.1;locus_tag=LPH39_RS11755;product=thioredoxin family protein;protein_id=WP_038271343.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2796523 2797728 . - . ID=gene-LPH39_RS11760;Name=LPH39_RS11760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11760;old_locus_tag=LPH39_11760 NZ_CP087677.1 Protein Homology CDS 2796523 2797728 . - 0 ID=cds-WP_038271378.1;Parent=gene-LPH39_RS11760;Dbxref=Genbank:WP_038271378.1;Name=WP_038271378.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894301.1;locus_tag=LPH39_RS11760;product=trans-2-enoyl-CoA reductase family protein;protein_id=WP_038271378.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2798846 2799238 . - . ID=gene-LPH39_RS11765;Name=LPH39_RS11765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11765;old_locus_tag=LPH39_11765 NZ_CP087677.1 Protein Homology CDS 2798846 2799238 . - 0 ID=cds-WP_230428210.1;Parent=gene-LPH39_RS11765;Dbxref=Genbank:WP_230428210.1;Name=WP_230428210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607767.1;locus_tag=LPH39_RS11765;product=hypothetical protein;protein_id=WP_230428210.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2799397 2800245 . - . ID=gene-LPH39_RS11770;Name=LPH39_RS11770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11770;old_locus_tag=LPH39_11770 NZ_CP087677.1 Protein Homology CDS 2799397 2800245 . - 0 ID=cds-WP_038271345.1;Parent=gene-LPH39_RS11770;Dbxref=Genbank:WP_038271345.1;Name=WP_038271345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894303.1;locus_tag=LPH39_RS11770;product=DUF2145 domain-containing protein;protein_id=WP_038271345.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2800273 2801238 . - . ID=gene-LPH39_RS11775;Name=LPH39_RS11775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11775;old_locus_tag=LPH39_11775 NZ_CP087677.1 Protein Homology CDS 2800273 2801238 . - 0 ID=cds-WP_038271346.1;Parent=gene-LPH39_RS11775;Dbxref=Genbank:WP_038271346.1;Name=WP_038271346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572824.1;locus_tag=LPH39_RS11775;product=ELM1/GtrOC1 family putative glycosyltransferase;protein_id=WP_038271346.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2801353 2801943 . + . ID=gene-LPH39_RS11780;Name=LPH39_RS11780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11780;old_locus_tag=LPH39_11780 NZ_CP087677.1 Protein Homology CDS 2801353 2801943 . + 0 ID=cds-WP_038271347.1;Parent=gene-LPH39_RS11780;Dbxref=Genbank:WP_038271347.1;Name=WP_038271347.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159505.1;locus_tag=LPH39_RS11780;product=malonic semialdehyde reductase;protein_id=WP_038271347.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2802006 2802719 . + . ID=gene-LPH39_RS11785;Name=LPH39_RS11785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11785;old_locus_tag=LPH39_11785 NZ_CP087677.1 Protein Homology CDS 2802006 2802719 . + 0 ID=cds-WP_081755445.1;Parent=gene-LPH39_RS11785;Dbxref=Genbank:WP_081755445.1;Name=WP_081755445.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851394.1;locus_tag=LPH39_RS11785;product=YceI family protein;protein_id=WP_081755445.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2802988 2803773 . - . ID=gene-LPH39_RS11790;Name=LPH39_RS11790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11790;old_locus_tag=LPH39_11790 NZ_CP087677.1 Protein Homology CDS 2802988 2803773 . - 0 ID=cds-WP_038271348.1;Parent=gene-LPH39_RS11790;Dbxref=Genbank:WP_038271348.1;Name=WP_038271348.1;Ontology_term=GO:0016311,GO:0050380,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;go_process=dephosphorylation|0016311||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341074.1;locus_tag=LPH39_RS11790;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_038271348.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2803968 2805377 . + . ID=gene-LPH39_RS11795;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=LPH39_RS11795;old_locus_tag=LPH39_11795 NZ_CP087677.1 Protein Homology CDS 2803968 2805377 . + 0 ID=cds-WP_038271349.1;Parent=gene-LPH39_RS11795;Dbxref=Genbank:WP_038271349.1;Name=WP_038271349.1;Ontology_term=GO:0006542,GO:0004356;gbkey=CDS;gene=glnA;go_function=glutamate-ammonia ligase activity|0004356||IEA;go_process=glutamine biosynthetic process|0006542||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157345.1;locus_tag=LPH39_RS11795;product=type I glutamate--ammonia ligase;protein_id=WP_038271349.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2805658 2805996 . + . ID=gene-LPH39_RS11800;Name=LPH39_RS11800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11800;old_locus_tag=LPH39_11800 NZ_CP087677.1 Protein Homology CDS 2805658 2805996 . + 0 ID=cds-WP_038271350.1;Parent=gene-LPH39_RS11800;Dbxref=Genbank:WP_038271350.1;Name=WP_038271350.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016654695.1;locus_tag=LPH39_RS11800;product=P-II family nitrogen regulator;protein_id=WP_038271350.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2806016 2807464 . + . ID=gene-LPH39_RS11805;Name=amt;gbkey=Gene;gene=amt;gene_biotype=protein_coding;locus_tag=LPH39_RS11805;old_locus_tag=LPH39_11805 NZ_CP087677.1 Protein Homology CDS 2806016 2807464 . + 0 ID=cds-WP_081755446.1;Parent=gene-LPH39_RS11805;Dbxref=Genbank:WP_081755446.1;Name=WP_081755446.1;Ontology_term=GO:0072488,GO:0008519;gbkey=CDS;gene=amt;go_function=ammonium transmembrane transporter activity|0008519||IEA;go_process=ammonium transmembrane transport|0072488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237112.1;locus_tag=LPH39_RS11805;product=ammonium transporter;protein_id=WP_081755446.1;transl_table=11 NZ_CP087677.1 RefSeq pseudogene 2807686 2808171 . + . ID=gene-LPH39_RS11810;Name=LPH39_RS11810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH39_RS11810;old_locus_tag=LPH39_11810;partial=true;pseudo=true;start_range=.,2807686 NZ_CP087677.1 Protein Homology CDS 2807686 2808171 . + 0 ID=cds-LPH39_RS11810;Parent=gene-LPH39_RS11810;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894314.1;locus_tag=LPH39_RS11810;partial=true;product=nitrogen regulation protein NR(I);pseudo=true;start_range=.,2807686;transl_table=11 NZ_CP087677.1 RefSeq gene 2808529 2808993 . + . ID=gene-LPH39_RS11815;Name=LPH39_RS11815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11815;old_locus_tag=LPH39_11815 NZ_CP087677.1 GeneMarkS-2+ CDS 2808529 2808993 . + 0 ID=cds-WP_038271352.1;Parent=gene-LPH39_RS11815;Dbxref=Genbank:WP_038271352.1;Name=WP_038271352.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11815;product=hypothetical protein;protein_id=WP_038271352.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2809100 2809969 . - . ID=gene-LPH39_RS11820;Name=nadC;gbkey=Gene;gene=nadC;gene_biotype=protein_coding;locus_tag=LPH39_RS11820;old_locus_tag=LPH39_11820 NZ_CP087677.1 Protein Homology CDS 2809100 2809969 . - 0 ID=cds-WP_038271353.1;Parent=gene-LPH39_RS11820;Dbxref=Genbank:WP_038271353.1;Name=WP_038271353.1;Ontology_term=GO:0019363,GO:0004514;gbkey=CDS;gene=nadC;go_function=nicotinate-nucleotide diphosphorylase (carboxylating) activity|0004514||IEA;go_process=pyridine nucleotide biosynthetic process|0019363||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572874.1;locus_tag=LPH39_RS11820;product=carboxylating nicotinate-nucleotide diphosphorylase;protein_id=WP_038271353.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2809966 2811504 . - . ID=gene-LPH39_RS11825;Name=LPH39_RS11825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11825;old_locus_tag=LPH39_11825 NZ_CP087677.1 Protein Homology CDS 2809966 2811504 . - 0 ID=cds-WP_038271354.1;Parent=gene-LPH39_RS11825;Dbxref=Genbank:WP_038271354.1;Name=WP_038271354.1;Ontology_term=GO:0009435,GO:0008734;gbkey=CDS;go_function=L-aspartate oxidase activity|0008734||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572875.1;locus_tag=LPH39_RS11825;product=L-aspartate oxidase;protein_id=WP_038271354.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2811517 2812518 . - . ID=gene-LPH39_RS11830;Name=nadA;gbkey=Gene;gene=nadA;gene_biotype=protein_coding;locus_tag=LPH39_RS11830;old_locus_tag=LPH39_11830 NZ_CP087677.1 Protein Homology CDS 2811517 2812518 . - 0 ID=cds-WP_201745829.1;Parent=gene-LPH39_RS11830;Dbxref=Genbank:WP_201745829.1;Name=WP_201745829.1;Ontology_term=GO:0009435,GO:0008987,GO:0051539;gbkey=CDS;gene=nadA;go_function=quinolinate synthetase A activity|0008987||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572876.1;locus_tag=LPH39_RS11830;product=quinolinate synthase NadA;protein_id=WP_201745829.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2813200 2813946 . - . ID=gene-LPH39_RS11835;Name=LPH39_RS11835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11835;old_locus_tag=LPH39_11835 NZ_CP087677.1 Protein Homology CDS 2813200 2813946 . - 0 ID=cds-WP_114867125.1;Parent=gene-LPH39_RS11835;Dbxref=Genbank:WP_114867125.1;Name=WP_114867125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894387.1;locus_tag=LPH39_RS11835;product=superoxide dismutase;protein_id=WP_114867125.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2814607 2815413 . + . ID=gene-LPH39_RS11840;Name=LPH39_RS11840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11840;old_locus_tag=LPH39_11840 NZ_CP087677.1 Protein Homology CDS 2814607 2815413 . + 0 ID=cds-WP_038271356.1;Parent=gene-LPH39_RS11840;Dbxref=Genbank:WP_038271356.1;Name=WP_038271356.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340561.1;locus_tag=LPH39_RS11840;product=TatD family hydrolase;protein_id=WP_038271356.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2815519 2816532 . + . ID=gene-LPH39_RS11845;Name=LPH39_RS11845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11845;old_locus_tag=LPH39_11845 NZ_CP087677.1 Protein Homology CDS 2815519 2816532 . + 0 ID=cds-WP_038271357.1;Parent=gene-LPH39_RS11845;Dbxref=Genbank:WP_038271357.1;Name=WP_038271357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894341.1;locus_tag=LPH39_RS11845;product=zonular occludens toxin domain-containing protein;protein_id=WP_038271357.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2816578 2816817 . - . ID=gene-LPH39_RS11850;Name=LPH39_RS11850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11850;old_locus_tag=LPH39_11850 NZ_CP087677.1 Protein Homology CDS 2816578 2816817 . - 0 ID=cds-WP_038271358.1;Parent=gene-LPH39_RS11850;Dbxref=Genbank:WP_038271358.1;Name=WP_038271358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084072.1;locus_tag=LPH39_RS11850;product=hypothetical protein;protein_id=WP_038271358.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2816894 2817238 . - . ID=gene-LPH39_RS11855;Name=LPH39_RS11855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11855;old_locus_tag=LPH39_11855 NZ_CP087677.1 Protein Homology CDS 2816894 2817238 . - 0 ID=cds-WP_038271360.1;Parent=gene-LPH39_RS11855;Dbxref=Genbank:WP_038271360.1;Name=WP_038271360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091322.1;locus_tag=LPH39_RS11855;product=DUF3653 domain-containing protein;protein_id=WP_038271360.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2817297 2817764 . - . ID=gene-LPH39_RS11860;Name=LPH39_RS11860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11860;old_locus_tag=LPH39_11860 NZ_CP087677.1 Protein Homology CDS 2817297 2817764 . - 0 ID=cds-WP_160165181.1;Parent=gene-LPH39_RS11860;Dbxref=Genbank:WP_160165181.1;Name=WP_160165181.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013540.2;locus_tag=LPH39_RS11860;product=DUF3693 domain-containing protein;protein_id=WP_160165181.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2817853 2818014 . + . ID=gene-LPH39_RS11865;Name=LPH39_RS11865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11865;old_locus_tag=LPH39_11865 NZ_CP087677.1 GeneMarkS-2+ CDS 2817853 2818014 . + 0 ID=cds-WP_160165182.1;Parent=gene-LPH39_RS11865;Dbxref=Genbank:WP_160165182.1;Name=WP_160165182.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11865;product=hypothetical protein;protein_id=WP_160165182.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2818018 2818281 . + . ID=gene-LPH39_RS11870;Name=LPH39_RS11870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11870;old_locus_tag=LPH39_11870 NZ_CP087677.1 GeneMarkS-2+ CDS 2818018 2818281 . + 0 ID=cds-WP_162814095.1-2;Parent=gene-LPH39_RS11870;Dbxref=Genbank:WP_162814095.1;Name=WP_162814095.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11870;product=hypothetical protein;protein_id=WP_162814095.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2818330 2818530 . + . ID=gene-LPH39_RS11875;Name=LPH39_RS11875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11875;old_locus_tag=LPH39_11875 NZ_CP087677.1 Protein Homology CDS 2818330 2818530 . + 0 ID=cds-WP_038273077.1-2;Parent=gene-LPH39_RS11875;Dbxref=Genbank:WP_038273077.1;Name=WP_038273077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853101.1;locus_tag=LPH39_RS11875;product=hypothetical protein;protein_id=WP_038273077.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2818650 2818793 . + . ID=gene-LPH39_RS11880;Name=LPH39_RS11880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11880;old_locus_tag=LPH39_11880 NZ_CP087677.1 GeneMarkS-2+ CDS 2818650 2818793 . + 0 ID=cds-WP_160165233.1-2;Parent=gene-LPH39_RS11880;Dbxref=Genbank:WP_160165233.1;Name=WP_160165233.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11880;product=hypothetical protein;protein_id=WP_160165233.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2818990 2819577 . + . ID=gene-LPH39_RS11885;Name=LPH39_RS11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11885;old_locus_tag=LPH39_11885 NZ_CP087677.1 Protein Homology CDS 2818990 2819577 . + 0 ID=cds-WP_038273076.1-2;Parent=gene-LPH39_RS11885;Dbxref=Genbank:WP_038273076.1;Name=WP_038273076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894347.1;locus_tag=LPH39_RS11885;product=hypothetical protein;protein_id=WP_038273076.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2819853 2820167 . + . ID=gene-LPH39_RS11890;Name=LPH39_RS11890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11890;old_locus_tag=LPH39_11890 NZ_CP087677.1 Protein Homology CDS 2819853 2820167 . + 0 ID=cds-WP_230428211.1-2;Parent=gene-LPH39_RS11890;Dbxref=Genbank:WP_230428211.1;Name=WP_230428211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003474436.1;locus_tag=LPH39_RS11890;product=hypothetical protein;protein_id=WP_230428211.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2820170 2820376 . + . ID=gene-LPH39_RS11895;Name=LPH39_RS11895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11895;old_locus_tag=LPH39_11895 NZ_CP087677.1 Protein Homology CDS 2820170 2820376 . + 0 ID=cds-WP_038273075.1-2;Parent=gene-LPH39_RS11895;Dbxref=Genbank:WP_038273075.1;Name=WP_038273075.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382571.1;locus_tag=LPH39_RS11895;product=hypothetical protein;protein_id=WP_038273075.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2820385 2820621 . + . ID=gene-LPH39_RS11900;Name=LPH39_RS11900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11900;old_locus_tag=LPH39_11900 NZ_CP087677.1 Protein Homology CDS 2820385 2820621 . + 0 ID=cds-WP_230428212.1-2;Parent=gene-LPH39_RS11900;Dbxref=Genbank:WP_230428212.1;Name=WP_230428212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382572.1;locus_tag=LPH39_RS11900;product=major capsid protein;protein_id=WP_230428212.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2820801 2822186 . + . ID=gene-LPH39_RS11905;Name=LPH39_RS11905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11905;old_locus_tag=LPH39_11905 NZ_CP087677.1 Protein Homology CDS 2820801 2822186 . + 0 ID=cds-WP_230428213.1-2;Parent=gene-LPH39_RS11905;Dbxref=Genbank:WP_230428213.1;Name=WP_230428213.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097844.1;locus_tag=LPH39_RS11905;product=furin-like repeat-containing protein;protein_id=WP_230428213.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2822189 2822533 . + . ID=gene-LPH39_RS11910;Name=LPH39_RS11910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11910;old_locus_tag=LPH39_11910 NZ_CP087677.1 Protein Homology CDS 2822189 2822533 . + 0 ID=cds-WP_038273069.1-2;Parent=gene-LPH39_RS11910;Dbxref=Genbank:WP_038273069.1;Name=WP_038273069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097845.1;locus_tag=LPH39_RS11910;product=DUF2523 family protein;protein_id=WP_038273069.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2822546 2823673 . + . ID=gene-LPH39_RS11915;Name=LPH39_RS11915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11915;old_locus_tag=LPH39_11915 NZ_CP087677.1 Protein Homology CDS 2822546 2823673 . + 0 ID=cds-WP_114867127.1-2;Parent=gene-LPH39_RS11915;Dbxref=Genbank:WP_114867127.1;Name=WP_114867127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382577.1;locus_tag=LPH39_RS11915;product=hypothetical protein;protein_id=WP_114867127.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2823763 2824035 . + . ID=gene-LPH39_RS11920;Name=LPH39_RS11920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11920;old_locus_tag=LPH39_11920 NZ_CP087677.1 Protein Homology CDS 2823763 2824035 . + 0 ID=cds-WP_038272460.1;Parent=gene-LPH39_RS11920;Dbxref=Genbank:WP_038272460.1;Name=WP_038272460.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: protein motif:HMM:NF015947.2;locus_tag=LPH39_RS11920;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_038272460.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2824032 2824448 . + . ID=gene-LPH39_RS11925;Name=LPH39_RS11925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11925;old_locus_tag=LPH39_11925 NZ_CP087677.1 Protein Homology CDS 2824032 2824448 . + 0 ID=cds-WP_038272463.1;Parent=gene-LPH39_RS11925;Dbxref=Genbank:WP_038272463.1;Name=WP_038272463.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851658.1;locus_tag=LPH39_RS11925;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_038272463.1;transl_table=11 NZ_CP087677.1 RefSeq gene 2824511 2824687 . - . ID=gene-LPH39_RS11930;Name=LPH39_RS11930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH39_RS11930;old_locus_tag=LPH39_11930 NZ_CP087677.1 GeneMarkS-2+ CDS 2824511 2824687 . - 0 ID=cds-WP_230439294.1;Parent=gene-LPH39_RS11930;Dbxref=Genbank:WP_230439294.1;Name=WP_230439294.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH39_RS11930;product=hypothetical protein;protein_id=WP_230439294.1;transl_table=11 ###