##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ASM2099076v1 #!genome-build-accession NCBI_Assembly:GCF_020990765.1 #!annotation-date 12/16/2022 03:18:44 #!annotation-source NCBI RefSeq ##sequence-region NZ_CP087685.1 1 2824770 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444770 NZ_CP087685.1 RefSeq region 1 2824770 . + . ID=NZ_CP087685.1:1..2824770;Dbxref=taxon:1444770;Is_circular=true;Name=ANONYMOUS;country=Taiwan;gbkey=Src;genome=chromosome;isolation-source=plant tissue;mol_type=genomic DNA;strain=PLS4A NZ_CP087685.1 RefSeq gene 344 616 . - . ID=gene-LPH40_RS00005;Name=LPH40_RS00005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00005;old_locus_tag=LPH40_00005 NZ_CP087685.1 Protein Homology CDS 344 616 . - 0 ID=cds-WP_038272512.1;Parent=gene-LPH40_RS00005;Dbxref=Genbank:WP_038272512.1;Name=WP_038272512.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000615979.1;locus_tag=LPH40_RS00005;product=type II toxin-antitoxin system mRNA interferase toxin%2C RelE/StbE family;protein_id=WP_038272512.1;transl_table=11 NZ_CP087685.1 RefSeq gene 616 876 . - . ID=gene-LPH40_RS00010;Name=LPH40_RS00010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00010;old_locus_tag=LPH40_00010 NZ_CP087685.1 Protein Homology CDS 616 876 . - 0 ID=cds-WP_038272513.1;Parent=gene-LPH40_RS00010;Dbxref=Genbank:WP_038272513.1;Name=WP_038272513.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000729703.1;locus_tag=LPH40_RS00010;product=type II toxin-antitoxin system RelB/DinJ family antitoxin;protein_id=WP_038272513.1;transl_table=11 NZ_CP087685.1 RefSeq gene 965 2092 . - . ID=gene-LPH40_RS00015;Name=LPH40_RS00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00015;old_locus_tag=LPH40_00015 NZ_CP087685.1 Protein Homology CDS 965 2092 . - 0 ID=cds-WP_114867127.1;Parent=gene-LPH40_RS00015;Dbxref=Genbank:WP_114867127.1;Name=WP_114867127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382577.1;locus_tag=LPH40_RS00015;product=hypothetical protein;protein_id=WP_114867127.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2105 2449 . - . ID=gene-LPH40_RS00020;Name=LPH40_RS00020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00020;old_locus_tag=LPH40_00020 NZ_CP087685.1 Protein Homology CDS 2105 2449 . - 0 ID=cds-WP_038273069.1;Parent=gene-LPH40_RS00020;Dbxref=Genbank:WP_038273069.1;Name=WP_038273069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097845.1;locus_tag=LPH40_RS00020;product=DUF2523 family protein;protein_id=WP_038273069.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2452 3837 . - . ID=gene-LPH40_RS00025;Name=LPH40_RS00025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00025;old_locus_tag=LPH40_00025 NZ_CP087685.1 Protein Homology CDS 2452 3837 . - 0 ID=cds-WP_230428213.1;Parent=gene-LPH40_RS00025;Dbxref=Genbank:WP_230428213.1;Name=WP_230428213.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097844.1;locus_tag=LPH40_RS00025;product=furin-like repeat-containing protein;protein_id=WP_230428213.1;transl_table=11 NZ_CP087685.1 RefSeq gene 4017 4253 . - . ID=gene-LPH40_RS00030;Name=LPH40_RS00030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00030;old_locus_tag=LPH40_00030 NZ_CP087685.1 Protein Homology CDS 4017 4253 . - 0 ID=cds-WP_230428212.1;Parent=gene-LPH40_RS00030;Dbxref=Genbank:WP_230428212.1;Name=WP_230428212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382572.1;locus_tag=LPH40_RS00030;product=major capsid protein;protein_id=WP_230428212.1;transl_table=11 NZ_CP087685.1 RefSeq gene 4262 4468 . - . ID=gene-LPH40_RS00035;Name=LPH40_RS00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00035;old_locus_tag=LPH40_00035 NZ_CP087685.1 Protein Homology CDS 4262 4468 . - 0 ID=cds-WP_038273075.1;Parent=gene-LPH40_RS00035;Dbxref=Genbank:WP_038273075.1;Name=WP_038273075.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382571.1;locus_tag=LPH40_RS00035;product=hypothetical protein;protein_id=WP_038273075.1;transl_table=11 NZ_CP087685.1 RefSeq gene 4471 4785 . - . ID=gene-LPH40_RS00040;Name=LPH40_RS00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00040;old_locus_tag=LPH40_00040 NZ_CP087685.1 Protein Homology CDS 4471 4785 . - 0 ID=cds-WP_230428211.1;Parent=gene-LPH40_RS00040;Dbxref=Genbank:WP_230428211.1;Name=WP_230428211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003474436.1;locus_tag=LPH40_RS00040;product=hypothetical protein;protein_id=WP_230428211.1;transl_table=11 NZ_CP087685.1 RefSeq gene 5061 5648 . - . ID=gene-LPH40_RS00045;Name=LPH40_RS00045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00045;old_locus_tag=LPH40_00045 NZ_CP087685.1 Protein Homology CDS 5061 5648 . - 0 ID=cds-WP_038273076.1;Parent=gene-LPH40_RS00045;Dbxref=Genbank:WP_038273076.1;Name=WP_038273076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894347.1;locus_tag=LPH40_RS00045;product=hypothetical protein;protein_id=WP_038273076.1;transl_table=11 NZ_CP087685.1 RefSeq gene 5845 5988 . - . ID=gene-LPH40_RS00050;Name=LPH40_RS00050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00050;old_locus_tag=LPH40_00050 NZ_CP087685.1 GeneMarkS-2+ CDS 5845 5988 . - 0 ID=cds-WP_160165233.1;Parent=gene-LPH40_RS00050;Dbxref=Genbank:WP_160165233.1;Name=WP_160165233.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00050;product=hypothetical protein;protein_id=WP_160165233.1;transl_table=11 NZ_CP087685.1 RefSeq gene 6108 6308 . - . ID=gene-LPH40_RS00055;Name=LPH40_RS00055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00055;old_locus_tag=LPH40_00055 NZ_CP087685.1 Protein Homology CDS 6108 6308 . - 0 ID=cds-WP_038273077.1;Parent=gene-LPH40_RS00055;Dbxref=Genbank:WP_038273077.1;Name=WP_038273077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853101.1;locus_tag=LPH40_RS00055;product=hypothetical protein;protein_id=WP_038273077.1;transl_table=11 NZ_CP087685.1 RefSeq gene 6357 6620 . - . ID=gene-LPH40_RS00060;Name=LPH40_RS00060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00060;old_locus_tag=LPH40_00060 NZ_CP087685.1 GeneMarkS-2+ CDS 6357 6620 . - 0 ID=cds-WP_162814095.1;Parent=gene-LPH40_RS00060;Dbxref=Genbank:WP_162814095.1;Name=WP_162814095.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00060;product=hypothetical protein;protein_id=WP_162814095.1;transl_table=11 NZ_CP087685.1 RefSeq gene 6624 6785 . - . ID=gene-LPH40_RS00065;Name=LPH40_RS00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00065;old_locus_tag=LPH40_00065 NZ_CP087685.1 GeneMarkS-2+ CDS 6624 6785 . - 0 ID=cds-WP_160165236.1;Parent=gene-LPH40_RS00065;Dbxref=Genbank:WP_160165236.1;Name=WP_160165236.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00065;product=hypothetical protein;protein_id=WP_160165236.1;transl_table=11 NZ_CP087685.1 RefSeq gene 7075 7404 . + . ID=gene-LPH40_RS00070;Name=LPH40_RS00070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00070;old_locus_tag=LPH40_00070 NZ_CP087685.1 Protein Homology CDS 7075 7404 . + 0 ID=cds-WP_230428286.1;Parent=gene-LPH40_RS00070;Dbxref=Genbank:WP_230428286.1;Name=WP_230428286.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023888.2;locus_tag=LPH40_RS00070;product=DUF3693 domain-containing protein;protein_id=WP_230428286.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 7493 7993 . - . ID=gene-LPH40_RS00075;Name=LPH40_RS00075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS00075;old_locus_tag=LPH40_00075;partial=true;pseudo=true;start_range=.,7493 NZ_CP087685.1 Protein Homology CDS 7493 7993 . - 0 ID=cds-LPH40_RS00075;Parent=gene-LPH40_RS00075;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: protein motif:HMM:NF012798.2;locus_tag=LPH40_RS00075;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;start_range=.,7493;transl_table=11 NZ_CP087685.1 RefSeq gene 8441 8662 . + . ID=gene-LPH40_RS00080;Name=LPH40_RS00080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00080;old_locus_tag=LPH40_00080 NZ_CP087685.1 Protein Homology CDS 8441 8662 . + 0 ID=cds-WP_038273164.1;Parent=gene-LPH40_RS00080;Dbxref=Genbank:WP_038273164.1;Name=WP_038273164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894329.1;locus_tag=LPH40_RS00080;product=antitoxin MazE family protein;protein_id=WP_038273164.1;transl_table=11 NZ_CP087685.1 RefSeq gene 8659 8982 . + . ID=gene-LPH40_RS00085;Name=LPH40_RS00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00085;old_locus_tag=LPH40_00085 NZ_CP087685.1 Protein Homology CDS 8659 8982 . + 0 ID=cds-WP_038273166.1;Parent=gene-LPH40_RS00085;Dbxref=Genbank:WP_038273166.1;Name=WP_038273166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159824.1;locus_tag=LPH40_RS00085;product=type II toxin-antitoxin system PemK/MazF family toxin;protein_id=WP_038273166.1;transl_table=11 NZ_CP087685.1 RefSeq gene 9083 10231 . - . ID=gene-LPH40_RS00090;Name=LPH40_RS00090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00090;old_locus_tag=LPH40_00090 NZ_CP087685.1 Protein Homology CDS 9083 10231 . - 0 ID=cds-WP_069636227.1;Parent=gene-LPH40_RS00090;Dbxref=Genbank:WP_069636227.1;Name=WP_069636227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382577.1;locus_tag=LPH40_RS00090;product=hypothetical protein;protein_id=WP_069636227.1;transl_table=11 NZ_CP087685.1 RefSeq gene 10231 10572 . - . ID=gene-LPH40_RS00095;Name=LPH40_RS00095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00095;old_locus_tag=LPH40_00095 NZ_CP087685.1 Protein Homology CDS 10231 10572 . - 0 ID=cds-WP_038273089.1;Parent=gene-LPH40_RS00095;Dbxref=Genbank:WP_038273089.1;Name=WP_038273089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097845.1;locus_tag=LPH40_RS00095;product=DUF2523 family protein;protein_id=WP_038273089.1;transl_table=11 NZ_CP087685.1 RefSeq gene 10576 11643 . - . ID=gene-LPH40_RS00100;Name=LPH40_RS00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00100;old_locus_tag=LPH40_00100 NZ_CP087685.1 Protein Homology CDS 10576 11643 . - 0 ID=cds-WP_152536670.1;Parent=gene-LPH40_RS00100;Dbxref=Genbank:WP_152536670.1;Name=WP_152536670.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF041109.1;locus_tag=LPH40_RS00100;product=virulence factor TspB C-terminal domain-related protein;protein_id=WP_152536670.1;transl_table=11 NZ_CP087685.1 RefSeq gene 12111 12329 . - . ID=gene-LPH40_RS00105;Name=LPH40_RS00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00105;old_locus_tag=LPH40_00105 NZ_CP087685.1 Protein Homology CDS 12111 12329 . - 0 ID=cds-WP_051482398.1;Parent=gene-LPH40_RS00105;Dbxref=Genbank:WP_051482398.1;Name=WP_051482398.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017194.2;locus_tag=LPH40_RS00105;product=major capsid protein;protein_id=WP_051482398.1;transl_table=11 NZ_CP087685.1 RefSeq gene 12338 12547 . - . ID=gene-LPH40_RS00110;Name=LPH40_RS00110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00110;old_locus_tag=LPH40_00110 NZ_CP087685.1 Protein Homology CDS 12338 12547 . - 0 ID=cds-WP_230428208.1;Parent=gene-LPH40_RS00110;Dbxref=Genbank:WP_230428208.1;Name=WP_230428208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382571.1;locus_tag=LPH40_RS00110;product=hypothetical protein;protein_id=WP_230428208.1;transl_table=11 NZ_CP087685.1 RefSeq gene 12547 12840 . - . ID=gene-LPH40_RS00115;Name=LPH40_RS00115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00115;old_locus_tag=LPH40_00115 NZ_CP087685.1 Protein Homology CDS 12547 12840 . - 0 ID=cds-WP_038273093.1;Parent=gene-LPH40_RS00115;Dbxref=Genbank:WP_038273093.1;Name=WP_038273093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097860.1;locus_tag=LPH40_RS00115;product=single-stranded DNA-binding protein;protein_id=WP_038273093.1;transl_table=11 NZ_CP087685.1 RefSeq gene 12886 14034 . - . ID=gene-LPH40_RS00120;Name=LPH40_RS00120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00120;old_locus_tag=LPH40_00120 NZ_CP087685.1 Protein Homology CDS 12886 14034 . - 0 ID=cds-WP_038273097.1;Parent=gene-LPH40_RS00120;Dbxref=Genbank:WP_038273097.1;Name=WP_038273097.1;Ontology_term=GO:0006270,GO:0003677,GO:0003916;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA replication initiation|0006270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853102.1;locus_tag=LPH40_RS00120;product=replication initiation factor domain-containing protein;protein_id=WP_038273097.1;transl_table=11 NZ_CP087685.1 RefSeq gene 14465 14647 . - . ID=gene-LPH40_RS00125;Name=LPH40_RS00125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00125;old_locus_tag=LPH40_00125 NZ_CP087685.1 Protein Homology CDS 14465 14647 . - 0 ID=cds-WP_114867130.1;Parent=gene-LPH40_RS00125;Dbxref=Genbank:WP_114867130.1;Name=WP_114867130.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853101.1;locus_tag=LPH40_RS00125;product=hypothetical protein;protein_id=WP_114867130.1;transl_table=11 NZ_CP087685.1 RefSeq gene 14678 14902 . - . ID=gene-LPH40_RS00130;Name=LPH40_RS00130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00130;old_locus_tag=LPH40_00130 NZ_CP087685.1 GeneMarkS-2+ CDS 14678 14902 . - 0 ID=cds-WP_160199341.1;Parent=gene-LPH40_RS00130;Dbxref=Genbank:WP_160199341.1;Name=WP_160199341.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00130;product=hypothetical protein;protein_id=WP_160199341.1;transl_table=11 NZ_CP087685.1 RefSeq gene 15401 15476 . - . ID=gene-LPH40_RS00135;Name=LPH40_RS00135;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS00135;old_locus_tag=LPH40_00135 NZ_CP087685.1 tRNAscan-SE tRNA 15401 15476 . - . ID=rna-LPH40_RS00135;Parent=gene-LPH40_RS00135;anticodon=(pos:complement(15441..15443));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS00135;product=tRNA-Lys NZ_CP087685.1 tRNAscan-SE exon 15401 15476 . - . ID=exon-LPH40_RS00135-1;Parent=rna-LPH40_RS00135;anticodon=(pos:complement(15441..15443));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS00135;product=tRNA-Lys NZ_CP087685.1 RefSeq gene 15549 16217 . - . ID=gene-LPH40_RS00140;Name=queC;gbkey=Gene;gene=queC;gene_biotype=protein_coding;locus_tag=LPH40_RS00140;old_locus_tag=LPH40_00140 NZ_CP087685.1 Protein Homology CDS 15549 16217 . - 0 ID=cds-WP_038271631.1;Parent=gene-LPH40_RS00140;Dbxref=Genbank:WP_038271631.1;Name=WP_038271631.1;Ontology_term=GO:0008616;gbkey=CDS;gene=queC;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894324.1;locus_tag=LPH40_RS00140;product=7-cyano-7-deazaguanine synthase QueC;protein_id=WP_038271631.1;transl_table=11 NZ_CP087685.1 RefSeq gene 17072 18841 . + . ID=gene-LPH40_RS00145;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;locus_tag=LPH40_RS00145;old_locus_tag=LPH40_00145 NZ_CP087685.1 Protein Homology CDS 17072 18841 . + 0 ID=cds-WP_038271663.1;Parent=gene-LPH40_RS00145;Dbxref=Genbank:WP_038271663.1;Name=WP_038271663.1;Ontology_term=GO:0006418,GO:0000166,GO:0004812,GO:0005524,GO:0016874;gbkey=CDS;gene=aspS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089732.1;locus_tag=LPH40_RS00145;product=aspartate--tRNA ligase;protein_id=WP_038271663.1;transl_table=11 NZ_CP087685.1 RefSeq gene 19163 19990 . - . ID=gene-LPH40_RS00150;Name=LPH40_RS00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00150;old_locus_tag=LPH40_00150 NZ_CP087685.1 Protein Homology CDS 19163 19990 . - 0 ID=cds-WP_038271629.1;Parent=gene-LPH40_RS00150;Dbxref=Genbank:WP_038271629.1;Name=WP_038271629.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF005395.0;locus_tag=LPH40_RS00150;product=SDR family oxidoreductase;protein_id=WP_038271629.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 20135 20427 . + . ID=gene-LPH40_RS00155;Name=LPH40_RS00155;end_range=20427,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS00155;old_locus_tag=LPH40_00155;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 20135 20427 . + 0 ID=cds-LPH40_RS00155;Parent=gene-LPH40_RS00155;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=20427,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015648284.1;locus_tag=LPH40_RS00155;partial=true;product=recombinase family protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 20454 21633 . + . ID=gene-LPH40_RS00160;Name=LPH40_RS00160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS00160;old_locus_tag=LPH40_00160;partial=true;pseudo=true;start_range=.,20454 NZ_CP087685.1 Protein Homology CDS 20454 21633 . + 0 ID=cds-LPH40_RS00160;Parent=gene-LPH40_RS00160;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014834018.1;locus_tag=LPH40_RS00160;partial=true;product=Tn3 family transposase;pseudo=true;start_range=.,20454;transl_table=11 NZ_CP087685.1 RefSeq gene 21677 23194 . - . ID=gene-LPH40_RS00165;Name=LPH40_RS00165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00165;old_locus_tag=LPH40_00165 NZ_CP087685.1 Protein Homology CDS 21677 23194 . - 0 ID=cds-WP_038271625.1;Parent=gene-LPH40_RS00165;Dbxref=Genbank:WP_038271625.1;Name=WP_038271625.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483539.1;locus_tag=LPH40_RS00165;product=fumarate hydratase;protein_id=WP_038271625.1;transl_table=11 NZ_CP087685.1 RefSeq gene 23205 23450 . - . ID=gene-LPH40_RS00170;Name=LPH40_RS00170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00170;old_locus_tag=LPH40_00170 NZ_CP087685.1 GeneMarkS-2+ CDS 23205 23450 . - 0 ID=cds-WP_038271623.1;Parent=gene-LPH40_RS00170;Dbxref=Genbank:WP_038271623.1;Name=WP_038271623.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00170;product=hypothetical protein;protein_id=WP_038271623.1;transl_table=11 NZ_CP087685.1 RefSeq gene 24516 26099 . - . ID=gene-LPH40_RS00175;Name=LPH40_RS00175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00175;old_locus_tag=LPH40_00175 NZ_CP087685.1 Protein Homology CDS 24516 26099 . - 0 ID=cds-WP_038271621.1;Parent=gene-LPH40_RS00175;Dbxref=Genbank:WP_038271621.1;Name=WP_038271621.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085579.1;locus_tag=LPH40_RS00175;product=S41 family peptidase;protein_id=WP_038271621.1;transl_table=11 NZ_CP087685.1 RefSeq gene 27646 28425 . + . ID=gene-LPH40_RS00180;Name=xth;gbkey=Gene;gene=xth;gene_biotype=protein_coding;locus_tag=LPH40_RS00180;old_locus_tag=LPH40_00180 NZ_CP087685.1 Protein Homology CDS 27646 28425 . + 0 ID=cds-WP_038271660.1;Parent=gene-LPH40_RS00180;Dbxref=Genbank:WP_038271660.1;Name=WP_038271660.1;Ontology_term=GO:0006281,GO:0008853;gbkey=CDS;gene=xth;go_function=exodeoxyribonuclease III activity|0008853||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901808.1;locus_tag=LPH40_RS00180;product=exodeoxyribonuclease III;protein_id=WP_038271660.1;transl_table=11 NZ_CP087685.1 RefSeq gene 28756 29364 . + . ID=gene-LPH40_RS00185;Name=LPH40_RS00185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00185;old_locus_tag=LPH40_00185 NZ_CP087685.1 Protein Homology CDS 28756 29364 . + 0 ID=cds-WP_038271618.1;Parent=gene-LPH40_RS00185;Dbxref=Genbank:WP_038271618.1;Name=WP_038271618.1;Ontology_term=GO:0000287,GO:0008897;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,holo-[acyl-carrier-protein] synthase activity|0008897||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972828.1;locus_tag=LPH40_RS00185;product=4'-phosphopantetheinyl transferase superfamily protein;protein_id=WP_038271618.1;transl_table=11 NZ_CP087685.1 RefSeq gene 29576 30214 . + . ID=gene-LPH40_RS00190;Name=rsmG;gbkey=Gene;gene=rsmG;gene_biotype=protein_coding;locus_tag=LPH40_RS00190;old_locus_tag=LPH40_00190 NZ_CP087685.1 Protein Homology CDS 29576 30214 . + 0 ID=cds-WP_038271616.1;Parent=gene-LPH40_RS00190;Dbxref=Genbank:WP_038271616.1;Name=WP_038271616.1;Ontology_term=GO:0031167,GO:0046118,GO:0008168,GO:0005575;gbkey=CDS;gene=rsmG;go_component=cellular_component|0005575||IEA;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA,7-methylguanosine biosynthetic process|0046118||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914596.1;locus_tag=LPH40_RS00190;product=16S rRNA (guanine(527)-N(7))-methyltransferase RsmG;protein_id=WP_038271616.1;transl_table=11 NZ_CP087685.1 RefSeq gene 30285 32285 . - . ID=gene-LPH40_RS00195;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=LPH40_RS00195;old_locus_tag=LPH40_00195 NZ_CP087685.1 Protein Homology CDS 30285 32285 . - 0 ID=cds-WP_038271614.1;Parent=gene-LPH40_RS00195;Dbxref=Genbank:WP_038271614.1;Name=WP_038271614.1;Ontology_term=GO:0006098,GO:0004802,GO:0005737;gbkey=CDS;gene=tkt;go_component=cytoplasm|0005737||IEA;go_function=transketolase activity|0004802||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348449.1;locus_tag=LPH40_RS00195;product=transketolase;protein_id=WP_038271614.1;transl_table=11 NZ_CP087685.1 RefSeq gene 32391 33671 . - . ID=gene-LPH40_RS00200;Name=LPH40_RS00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00200;old_locus_tag=LPH40_00200 NZ_CP087685.1 Protein Homology CDS 32391 33671 . - 0 ID=cds-WP_081755459.1;Parent=gene-LPH40_RS00200;Dbxref=Genbank:WP_081755459.1;Name=WP_081755459.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851384.1;locus_tag=LPH40_RS00200;product=dicarboxylate/amino acid:cation symporter;protein_id=WP_081755459.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 33936 34040 . + . ID=gene-LPH40_RS00205;Name=LPH40_RS00205;end_range=34040,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS00205;old_locus_tag=LPH40_00205;partial=true;pseudo=true;start_range=.,33936 NZ_CP087685.1 Protein Homology CDS 33936 34040 . + 0 ID=cds-LPH40_RS00205;Parent=gene-LPH40_RS00205;Note=maintains the balance of metabolites in the pentose-phosphate pathway%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=34040,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012479209.1;locus_tag=LPH40_RS00205;partial=true;product=transaldolase;pseudo=true;start_range=.,33936;transl_table=11 NZ_CP087685.1 RefSeq gene 34175 34825 . - . ID=gene-LPH40_RS00210;Name=msrA;gbkey=Gene;gene=msrA;gene_biotype=protein_coding;locus_tag=LPH40_RS00210;old_locus_tag=LPH40_00210 NZ_CP087685.1 Protein Homology CDS 34175 34825 . - 0 ID=cds-WP_038271658.1;Parent=gene-LPH40_RS00210;Dbxref=Genbank:WP_038271658.1;Name=WP_038271658.1;Ontology_term=GO:0006979,GO:0030091,GO:0008113,GO:0033744;gbkey=CDS;gene=msrA;go_function=peptide-methionine (S)-S-oxide reductase activity|0008113||IEA,L-methionine:thioredoxin-disulfide S-oxidoreductase activity|0033744||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009577520.1;locus_tag=LPH40_RS00210;product=peptide-methionine (S)-S-oxide reductase MsrA;protein_id=WP_038271658.1;transl_table=11 NZ_CP087685.1 RefSeq gene 34938 35432 . - . ID=gene-LPH40_RS00215;Name=LPH40_RS00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00215;old_locus_tag=LPH40_00215 NZ_CP087685.1 Protein Homology CDS 34938 35432 . - 0 ID=cds-WP_038271655.1;Parent=gene-LPH40_RS00215;Dbxref=Genbank:WP_038271655.1;Name=WP_038271655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085447.1;locus_tag=LPH40_RS00215;product=SgcJ/EcaC family oxidoreductase;protein_id=WP_038271655.1;transl_table=11 NZ_CP087685.1 RefSeq gene 36896 37288 . + . ID=gene-LPH40_RS00220;Name=LPH40_RS00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00220;old_locus_tag=LPH40_00220 NZ_CP087685.1 Protein Homology CDS 36896 37288 . + 0 ID=cds-WP_038271652.1;Parent=gene-LPH40_RS00220;Dbxref=Genbank:WP_038271652.1;Name=WP_038271652.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502532.1;locus_tag=LPH40_RS00220;product=HU family DNA-binding protein;protein_id=WP_038271652.1;transl_table=11 NZ_CP087685.1 RefSeq gene 38685 40844 . + . ID=gene-LPH40_RS00225;Name=dcp;gbkey=Gene;gene=dcp;gene_biotype=protein_coding;locus_tag=LPH40_RS00225;old_locus_tag=LPH40_00225 NZ_CP087685.1 Protein Homology CDS 38685 40844 . + 0 ID=cds-WP_038271650.1;Parent=gene-LPH40_RS00225;Dbxref=Genbank:WP_038271650.1;Name=WP_038271650.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=dcp;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008266515.1;locus_tag=LPH40_RS00225;product=peptidyl-dipeptidase Dcp;protein_id=WP_038271650.1;transl_table=11 NZ_CP087685.1 RefSeq gene 40930 41337 . - . ID=gene-LPH40_RS00230;Name=LPH40_RS00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00230;old_locus_tag=LPH40_00230 NZ_CP087685.1 Protein Homology CDS 40930 41337 . - 0 ID=cds-WP_230428287.1;Parent=gene-LPH40_RS00230;Dbxref=Genbank:WP_230428287.1;Name=WP_230428287.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894407.1;locus_tag=LPH40_RS00230;product=VirK family protein;protein_id=WP_230428287.1;transl_table=11 NZ_CP087685.1 RefSeq gene 42372 43670 . + . ID=gene-LPH40_RS00235;Name=folC;gbkey=Gene;gene=folC;gene_biotype=protein_coding;locus_tag=LPH40_RS00235;old_locus_tag=LPH40_00235 NZ_CP087685.1 Protein Homology CDS 42372 43670 . + 0 ID=cds-WP_038271605.1;Parent=gene-LPH40_RS00235;Dbxref=Genbank:WP_038271605.1;Name=WP_038271605.1;Ontology_term=GO:0009396,GO:0004326,GO:0005524,GO:0016874;gbkey=CDS;gene=folC;go_function=tetrahydrofolylpolyglutamate synthase activity|0004326||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085450.1;locus_tag=LPH40_RS00235;product=bifunctional tetrahydrofolate synthase/dihydrofolate synthase;protein_id=WP_038271605.1;transl_table=11 NZ_CP087685.1 RefSeq gene 43709 44713 . + . ID=gene-LPH40_RS00240;Name=LPH40_RS00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00240;old_locus_tag=LPH40_00240 NZ_CP087685.1 Protein Homology CDS 43709 44713 . + 0 ID=cds-WP_038271603.1;Parent=gene-LPH40_RS00240;Dbxref=Genbank:WP_038271603.1;Name=WP_038271603.1;Ontology_term=GO:0042834;gbkey=CDS;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301876.1;locus_tag=LPH40_RS00240;product=SPOR domain-containing protein;protein_id=WP_038271603.1;transl_table=11 NZ_CP087685.1 RefSeq gene 44790 45323 . + . ID=gene-LPH40_RS00245;Name=LPH40_RS00245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00245;old_locus_tag=LPH40_00245 NZ_CP087685.1 Protein Homology CDS 44790 45323 . + 0 ID=cds-WP_081755458.1;Parent=gene-LPH40_RS00245;Dbxref=Genbank:WP_081755458.1;Name=WP_081755458.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894410.1;locus_tag=LPH40_RS00245;product=CvpA family protein;protein_id=WP_081755458.1;transl_table=11 NZ_CP087685.1 RefSeq gene 45466 46923 . + . ID=gene-LPH40_RS00250;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;locus_tag=LPH40_RS00250;old_locus_tag=LPH40_00250 NZ_CP087685.1 Protein Homology CDS 45466 46923 . + 0 ID=cds-WP_038271601.1;Parent=gene-LPH40_RS00250;Dbxref=Genbank:WP_038271601.1;Name=WP_038271601.1;Ontology_term=GO:0009152,GO:0004044;gbkey=CDS;gene=purF;go_function=amidophosphoribosyltransferase activity|0004044||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085453.1;locus_tag=LPH40_RS00250;product=amidophosphoribosyltransferase;protein_id=WP_038271601.1;transl_table=11 NZ_CP087685.1 RefSeq gene 47650 48162 . - . ID=gene-LPH40_RS00255;Name=LPH40_RS00255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00255;old_locus_tag=LPH40_00255 NZ_CP087685.1 Protein Homology CDS 47650 48162 . - 0 ID=cds-WP_051482345.1;Parent=gene-LPH40_RS00255;Dbxref=Genbank:WP_051482345.1;Name=WP_051482345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085454.1;locus_tag=LPH40_RS00255;product=chemotaxis protein CheW;protein_id=WP_051482345.1;transl_table=11 NZ_CP087685.1 RefSeq gene 48184 49389 . - . ID=gene-LPH40_RS00260;Name=LPH40_RS00260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00260;old_locus_tag=LPH40_00260 NZ_CP087685.1 Protein Homology CDS 48184 49389 . - 0 ID=cds-WP_038271598.1;Parent=gene-LPH40_RS00260;Dbxref=Genbank:WP_038271598.1;Name=WP_038271598.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852974.1;locus_tag=LPH40_RS00260;product=glutamate methyltransferase;protein_id=WP_038271598.1;transl_table=11 NZ_CP087685.1 RefSeq gene 49376 54634 . - . ID=gene-LPH40_RS00265;Name=LPH40_RS00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00265;old_locus_tag=LPH40_00265 NZ_CP087685.1 Protein Homology CDS 49376 54634 . - 0 ID=cds-WP_038271596.1;Parent=gene-LPH40_RS00265;Dbxref=Genbank:WP_038271596.1;Name=WP_038271596.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572849.1;locus_tag=LPH40_RS00265;product=Hpt domain-containing protein;protein_id=WP_038271596.1;transl_table=11 NZ_CP087685.1 RefSeq gene 54741 56783 . - . ID=gene-LPH40_RS00270;Name=LPH40_RS00270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00270;old_locus_tag=LPH40_00270 NZ_CP087685.1 Protein Homology CDS 54741 56783 . - 0 ID=cds-WP_038271594.1;Parent=gene-LPH40_RS00270;Dbxref=Genbank:WP_038271594.1;Name=WP_038271594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988635.1;locus_tag=LPH40_RS00270;product=methyl-accepting chemotaxis protein;protein_id=WP_038271594.1;transl_table=11 NZ_CP087685.1 RefSeq gene 56823 57353 . - . ID=gene-LPH40_RS00275;Name=LPH40_RS00275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00275;old_locus_tag=LPH40_00275 NZ_CP087685.1 Protein Homology CDS 56823 57353 . - 0 ID=cds-WP_038271592.1;Parent=gene-LPH40_RS00275;Dbxref=Genbank:WP_038271592.1;Name=WP_038271592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508568.1;locus_tag=LPH40_RS00275;product=chemotaxis protein CheW;protein_id=WP_038271592.1;transl_table=11 NZ_CP087685.1 RefSeq gene 57370 57786 . - . ID=gene-LPH40_RS00280;Name=LPH40_RS00280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00280;old_locus_tag=LPH40_00280 NZ_CP087685.1 Protein Homology CDS 57370 57786 . - 0 ID=cds-WP_038271642.1;Parent=gene-LPH40_RS00280;Dbxref=Genbank:WP_038271642.1;Name=WP_038271642.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085459.1;locus_tag=LPH40_RS00280;product=response regulator;protein_id=WP_038271642.1;transl_table=11 NZ_CP087685.1 RefSeq gene 58056 59000 . + . ID=gene-LPH40_RS00285;Name=gshB;gbkey=Gene;gene=gshB;gene_biotype=protein_coding;locus_tag=LPH40_RS00285;old_locus_tag=LPH40_00285 NZ_CP087685.1 Protein Homology CDS 58056 59000 . + 0 ID=cds-WP_038271589.1;Parent=gene-LPH40_RS00285;Dbxref=Genbank:WP_038271589.1;Name=WP_038271589.1;Ontology_term=GO:0006750,GO:0004363;gbkey=CDS;gene=gshB;go_function=glutathione synthase activity|0004363||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894415.1;locus_tag=LPH40_RS00285;product=glutathione synthase;protein_id=WP_038271589.1;transl_table=11 NZ_CP087685.1 RefSeq gene 59002 59877 . + . ID=gene-LPH40_RS00290;Name=LPH40_RS00290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00290;old_locus_tag=LPH40_00290 NZ_CP087685.1 Protein Homology CDS 59002 59877 . + 0 ID=cds-WP_038271586.1;Parent=gene-LPH40_RS00290;Dbxref=Genbank:WP_038271586.1;Name=WP_038271586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382557.1;locus_tag=LPH40_RS00290;product=energy transducer TonB;protein_id=WP_038271586.1;transl_table=11 NZ_CP087685.1 RefSeq gene 60261 61070 . + . ID=gene-LPH40_RS00295;Name=LPH40_RS00295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00295;old_locus_tag=LPH40_00295 NZ_CP087685.1 Protein Homology CDS 60261 61070 . + 0 ID=cds-WP_038271584.1;Parent=gene-LPH40_RS00295;Dbxref=Genbank:WP_038271584.1;Name=WP_038271584.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097814.1;locus_tag=LPH40_RS00295;product=DUF6216 family protein;protein_id=WP_038271584.1;transl_table=11 NZ_CP087685.1 RefSeq gene 61781 63937 . - . ID=gene-LPH40_RS00300;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=LPH40_RS00300;old_locus_tag=LPH40_00300 NZ_CP087685.1 Protein Homology CDS 61781 63937 . - 0 ID=cds-WP_038271582.1;Parent=gene-LPH40_RS00300;Dbxref=Genbank:WP_038271582.1;Name=WP_038271582.1;Ontology_term=GO:0006426,GO:0004820,GO:0009345;gbkey=CDS;gene=glyS;go_component=glycine-tRNA ligase complex|0009345||IEA;go_function=glycine-tRNA ligase activity|0004820||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039155.1;locus_tag=LPH40_RS00300;product=glycine--tRNA ligase subunit beta;protein_id=WP_038271582.1;transl_table=11 NZ_CP087685.1 RefSeq gene 64028 64951 . - . ID=gene-LPH40_RS00305;Name=glyQ;gbkey=Gene;gene=glyQ;gene_biotype=protein_coding;locus_tag=LPH40_RS00305;old_locus_tag=LPH40_00305 NZ_CP087685.1 Protein Homology CDS 64028 64951 . - 0 ID=cds-WP_038271580.1;Parent=gene-LPH40_RS00305;Dbxref=Genbank:WP_038271580.1;Name=WP_038271580.1;Ontology_term=GO:0006426,GO:0004820,GO:0009345;gbkey=CDS;gene=glyQ;go_component=glycine-tRNA ligase complex|0009345||IEA;go_function=glycine-tRNA ligase activity|0004820||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156064.1;locus_tag=LPH40_RS00305;product=glycine--tRNA ligase subunit alpha;protein_id=WP_038271580.1;transl_table=11 NZ_CP087685.1 RefSeq gene 65288 66925 . - . ID=gene-LPH40_RS00310;Name=LPH40_RS00310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00310;old_locus_tag=LPH40_00310 NZ_CP087685.1 Protein Homology CDS 65288 66925 . - 0 ID=cds-WP_038271579.1;Parent=gene-LPH40_RS00310;Dbxref=Genbank:WP_038271579.1;Name=WP_038271579.1;Ontology_term=GO:0009435,GO:0003952,GO:0005524;gbkey=CDS;go_function=NAD+ synthase (glutamine-hydrolyzing) activity|0003952||IEA,ATP binding|0005524||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337819.1;locus_tag=LPH40_RS00310;product=NAD+ synthase;protein_id=WP_038271579.1;transl_table=11 NZ_CP087685.1 RefSeq gene 67471 67890 . - . ID=gene-LPH40_RS00315;Name=LPH40_RS00315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00315;old_locus_tag=LPH40_00315 NZ_CP087685.1 GeneMarkS-2+ CDS 67471 67890 . - 0 ID=cds-WP_152536638.1;Parent=gene-LPH40_RS00315;Dbxref=Genbank:WP_152536638.1;Name=WP_152536638.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00315;product=hypothetical protein;protein_id=WP_152536638.1;transl_table=11 NZ_CP087685.1 RefSeq gene 67835 68197 . - . ID=gene-LPH40_RS00320;Name=LPH40_RS00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00320;old_locus_tag=LPH40_00320 NZ_CP087685.1 GeneMarkS-2+ CDS 67835 68197 . - 0 ID=cds-WP_051482343.1;Parent=gene-LPH40_RS00320;Dbxref=Genbank:WP_051482343.1;Name=WP_051482343.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00320;product=hypothetical protein;protein_id=WP_051482343.1;transl_table=11 NZ_CP087685.1 RefSeq gene 68327 68482 . - . ID=gene-LPH40_RS00325;Name=LPH40_RS00325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00325;old_locus_tag=LPH40_00325 NZ_CP087685.1 GeneMarkS-2+ CDS 68327 68482 . - 0 ID=cds-WP_160165192.1;Parent=gene-LPH40_RS00325;Dbxref=Genbank:WP_160165192.1;Name=WP_160165192.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00325;product=hypothetical protein;protein_id=WP_160165192.1;transl_table=11 NZ_CP087685.1 RefSeq gene 68658 69041 . + . ID=gene-LPH40_RS00330;Name=LPH40_RS00330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00330;old_locus_tag=LPH40_00330 NZ_CP087685.1 Protein Homology CDS 68658 69041 . + 0 ID=cds-WP_038271578.1;Parent=gene-LPH40_RS00330;Dbxref=Genbank:WP_038271578.1;Name=WP_038271578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894423.1;locus_tag=LPH40_RS00330;product=YkgJ family cysteine cluster protein;protein_id=WP_038271578.1;transl_table=11 NZ_CP087685.1 RefSeq gene 69038 69181 . - . ID=gene-LPH40_RS00335;Name=LPH40_RS00335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00335;old_locus_tag=LPH40_00335 NZ_CP087685.1 GeneMarkS-2+ CDS 69038 69181 . - 0 ID=cds-WP_230428503.1;Parent=gene-LPH40_RS00335;Dbxref=Genbank:WP_230428503.1;Name=WP_230428503.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00335;product=hypothetical protein;protein_id=WP_230428503.1;transl_table=11 NZ_CP087685.1 RefSeq gene 69240 69461 . - . ID=gene-LPH40_RS00340;Name=LPH40_RS00340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00340;old_locus_tag=LPH40_00340 NZ_CP087685.1 GeneMarkS-2+ CDS 69240 69461 . - 0 ID=cds-WP_152536635.1;Parent=gene-LPH40_RS00340;Dbxref=Genbank:WP_152536635.1;Name=WP_152536635.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00340;product=hypothetical protein;protein_id=WP_152536635.1;transl_table=11 NZ_CP087685.1 RefSeq gene 69683 70594 . - . ID=gene-LPH40_RS00345;Name=LPH40_RS00345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00345;old_locus_tag=LPH40_00345 NZ_CP087685.1 Protein Homology CDS 69683 70594 . - 0 ID=cds-WP_038271576.1;Parent=gene-LPH40_RS00345;Dbxref=Genbank:WP_038271576.1;Name=WP_038271576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572841.1;locus_tag=LPH40_RS00345;product=alpha/beta fold hydrolase;protein_id=WP_038271576.1;transl_table=11 NZ_CP087685.1 RefSeq gene 70591 71517 . - . ID=gene-LPH40_RS00350;Name=LPH40_RS00350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00350;old_locus_tag=LPH40_00350 NZ_CP087685.1 GeneMarkS-2+ CDS 70591 71517 . - 0 ID=cds-WP_230428214.1;Parent=gene-LPH40_RS00350;Dbxref=Genbank:WP_230428214.1;Name=WP_230428214.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00350;product=hypothetical protein;protein_id=WP_230428214.1;transl_table=11 NZ_CP087685.1 RefSeq gene 71553 72569 . - . ID=gene-LPH40_RS00355;Name=LPH40_RS00355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00355;old_locus_tag=LPH40_00355 NZ_CP087685.1 Protein Homology CDS 71553 72569 . - 0 ID=cds-WP_038271575.1;Parent=gene-LPH40_RS00355;Dbxref=Genbank:WP_038271575.1;Name=WP_038271575.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809874.1;locus_tag=LPH40_RS00355;product=3-oxoacyl-ACP synthase III;protein_id=WP_038271575.1;transl_table=11 NZ_CP087685.1 RefSeq gene 72676 72996 . - . ID=gene-LPH40_RS00360;Name=LPH40_RS00360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00360;old_locus_tag=LPH40_00360 NZ_CP087685.1 Protein Homology CDS 72676 72996 . - 0 ID=cds-WP_038271574.1;Parent=gene-LPH40_RS00360;Dbxref=Genbank:WP_038271574.1;Name=WP_038271574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488921.1;locus_tag=LPH40_RS00360;product=DUF4156 domain-containing protein;protein_id=WP_038271574.1;transl_table=11 NZ_CP087685.1 RefSeq gene 73273 73773 . + . ID=gene-LPH40_RS00365;Name=LPH40_RS00365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00365;old_locus_tag=LPH40_00365 NZ_CP087685.1 Protein Homology CDS 73273 73773 . + 0 ID=cds-WP_038271638.1;Parent=gene-LPH40_RS00365;Dbxref=Genbank:WP_038271638.1;Name=WP_038271638.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085473.1;locus_tag=LPH40_RS00365;product=tRNA (cytidine(34)-2'-O)-methyltransferase;protein_id=WP_038271638.1;transl_table=11 NZ_CP087685.1 RefSeq gene 73965 74246 . - . ID=gene-LPH40_RS00370;Name=LPH40_RS00370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00370;old_locus_tag=LPH40_00370 NZ_CP087685.1 GeneMarkS-2+ CDS 73965 74246 . - 0 ID=cds-WP_152536634.1;Parent=gene-LPH40_RS00370;Dbxref=Genbank:WP_152536634.1;Name=WP_152536634.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00370;product=hypothetical protein;protein_id=WP_152536634.1;transl_table=11 NZ_CP087685.1 RefSeq gene 75003 76586 . + . ID=gene-LPH40_RS00375;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=LPH40_RS00375;old_locus_tag=LPH40_00375 NZ_CP087685.1 Protein Homology CDS 75003 76586 . + 0 ID=cds-WP_038271569.1;Parent=gene-LPH40_RS00375;Dbxref=Genbank:WP_038271569.1;Name=WP_038271569.1;Ontology_term=GO:0006164,GO:0006189,GO:0003824,GO:0003937,GO:0004643;gbkey=CDS;gene=purH;go_function=catalytic activity|0003824||IEA,IMP cyclohydrolase activity|0003937||IEA,phosphoribosylaminoimidazolecarboxamide formyltransferase activity|0004643||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA,'de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302295.1;locus_tag=LPH40_RS00375;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;protein_id=WP_038271569.1;transl_table=11 NZ_CP087685.1 RefSeq gene 77484 78773 . + . ID=gene-LPH40_RS00380;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=LPH40_RS00380;old_locus_tag=LPH40_00380 NZ_CP087685.1 Protein Homology CDS 77484 78773 . + 0 ID=cds-WP_038271566.1;Parent=gene-LPH40_RS00380;Dbxref=Genbank:WP_038271566.1;Name=WP_038271566.1;Ontology_term=GO:0006189,GO:0009152,GO:0004637;gbkey=CDS;gene=purD;go_function=phosphoribosylamine-glycine ligase activity|0004637||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346194.1;locus_tag=LPH40_RS00380;product=phosphoribosylamine--glycine ligase;protein_id=WP_038271566.1;transl_table=11 NZ_CP087685.1 RefSeq gene 78875 79105 . - . ID=gene-LPH40_RS00385;Name=LPH40_RS00385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00385;old_locus_tag=LPH40_00385 NZ_CP087685.1 GeneMarkS-2+ CDS 78875 79105 . - 0 ID=cds-WP_152536633.1;Parent=gene-LPH40_RS00385;Dbxref=Genbank:WP_152536633.1;Name=WP_152536633.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00385;product=hypothetical protein;protein_id=WP_152536633.1;transl_table=11 NZ_CP087685.1 RefSeq gene 79225 79353 . - . ID=gene-LPH40_RS11905;Name=LPH40_RS11905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11905 NZ_CP087685.1 GeneMarkS-2+ CDS 79225 79353 . - 0 ID=cds-WP_267903149.1;Parent=gene-LPH40_RS11905;Dbxref=Genbank:WP_267903149.1;Name=WP_267903149.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11905;product=hypothetical protein;protein_id=WP_267903149.1;transl_table=11 NZ_CP087685.1 RefSeq gene 79411 80187 . + . ID=gene-LPH40_RS00390;Name=LPH40_RS00390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00390;old_locus_tag=LPH40_00390 NZ_CP087685.1 GeneMarkS-2+ CDS 79411 80187 . + 0 ID=cds-WP_152536632.1;Parent=gene-LPH40_RS00390;Dbxref=Genbank:WP_152536632.1;Name=WP_152536632.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00390;product=hypothetical protein;protein_id=WP_152536632.1;transl_table=11 NZ_CP087685.1 RefSeq gene 80184 80771 . + . ID=gene-LPH40_RS00395;Name=LPH40_RS00395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00395;old_locus_tag=LPH40_00395 NZ_CP087685.1 GeneMarkS-2+ CDS 80184 80771 . + 0 ID=cds-WP_152536631.1;Parent=gene-LPH40_RS00395;Dbxref=Genbank:WP_152536631.1;Name=WP_152536631.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00395;product=hypothetical protein;protein_id=WP_152536631.1;transl_table=11 NZ_CP087685.1 RefSeq gene 80768 82987 . + . ID=gene-LPH40_RS00400;Name=yccS;gbkey=Gene;gene=yccS;gene_biotype=protein_coding;locus_tag=LPH40_RS00400;old_locus_tag=LPH40_00400 NZ_CP087685.1 Protein Homology CDS 80768 82987 . + 0 ID=cds-WP_081755456.1;Parent=gene-LPH40_RS00400;Dbxref=Genbank:WP_081755456.1;Name=WP_081755456.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yccS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894436.1;locus_tag=LPH40_RS00400;product=YccS family putative transporter;protein_id=WP_081755456.1;transl_table=11 NZ_CP087685.1 RefSeq gene 84060 84377 . - . ID=gene-LPH40_RS00405;Name=LPH40_RS00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00405;old_locus_tag=LPH40_00405 NZ_CP087685.1 Protein Homology CDS 84060 84377 . - 0 ID=cds-WP_051482342.1;Parent=gene-LPH40_RS00405;Dbxref=Genbank:WP_051482342.1;Name=WP_051482342.1;Ontology_term=GO:0009307,GO:0009036;gbkey=CDS;go_function=type II site-specific deoxyribonuclease activity|0009036||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: protein motif:HMM:NF020757.2;locus_tag=LPH40_RS00405;product=BglII/BstYI family type II restriction endonuclease;protein_id=WP_051482342.1;transl_table=11 NZ_CP087685.1 RefSeq gene 84701 85594 . - . ID=gene-LPH40_RS00410;Name=ampE;gbkey=Gene;gene=ampE;gene_biotype=protein_coding;locus_tag=LPH40_RS00410;old_locus_tag=LPH40_00410 NZ_CP087685.1 Protein Homology CDS 84701 85594 . - 0 ID=cds-WP_038271558.1;Parent=gene-LPH40_RS00410;Dbxref=Genbank:WP_038271558.1;Name=WP_038271558.1;gbkey=CDS;gene=ampE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337811.1;locus_tag=LPH40_RS00410;product=regulatory signaling modulator protein AmpE;protein_id=WP_038271558.1;transl_table=11 NZ_CP087685.1 RefSeq gene 86619 90269 . - . ID=gene-LPH40_RS00415;Name=LPH40_RS00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00415;old_locus_tag=LPH40_00415 NZ_CP087685.1 Protein Homology CDS 86619 90269 . - 0 ID=cds-WP_114867132.1;Parent=gene-LPH40_RS00415;Dbxref=Genbank:WP_114867132.1;Name=WP_114867132.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337810.1;locus_tag=LPH40_RS00415;product=YadA-like family protein;protein_id=WP_114867132.1;transl_table=11 NZ_CP087685.1 RefSeq gene 91347 91949 . + . ID=gene-LPH40_RS00420;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=LPH40_RS00420;old_locus_tag=LPH40_00420 NZ_CP087685.1 Protein Homology CDS 91347 91949 . + 0 ID=cds-WP_038273009.1;Parent=gene-LPH40_RS00420;Dbxref=Genbank:WP_038273009.1;Name=WP_038273009.1;Ontology_term=GO:0042559,GO:0046654,GO:0003934;gbkey=CDS;gene=folE;go_function=GTP cyclohydrolase I activity|0003934||IEA;go_process=pteridine-containing compound biosynthetic process|0042559||IEA,tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158364.1;locus_tag=LPH40_RS00420;product=GTP cyclohydrolase I FolE;protein_id=WP_038273009.1;transl_table=11 NZ_CP087685.1 RefSeq gene 92040 92270 . - . ID=gene-LPH40_RS00425;Name=LPH40_RS00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00425;old_locus_tag=LPH40_00425 NZ_CP087685.1 GeneMarkS-2+ CDS 92040 92270 . - 0 ID=cds-WP_160199342.1;Parent=gene-LPH40_RS00425;Dbxref=Genbank:WP_160199342.1;Name=WP_160199342.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00425;product=hypothetical protein;protein_id=WP_160199342.1;transl_table=11 NZ_CP087685.1 RefSeq gene 92620 93198 . + . ID=gene-LPH40_RS00430;Name=LPH40_RS00430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00430;old_locus_tag=LPH40_00430 NZ_CP087685.1 Protein Homology CDS 92620 93198 . + 0 ID=cds-WP_038273004.1;Parent=gene-LPH40_RS00430;Dbxref=Genbank:WP_038273004.1;Name=WP_038273004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091135.1;locus_tag=LPH40_RS00430;product=gamma carbonic anhydrase family protein;protein_id=WP_038273004.1;transl_table=11 NZ_CP087685.1 RefSeq gene 94249 94998 . - . ID=gene-LPH40_RS00435;Name=rlmB;gbkey=Gene;gene=rlmB;gene_biotype=protein_coding;locus_tag=LPH40_RS00435;old_locus_tag=LPH40_00435 NZ_CP087685.1 Protein Homology CDS 94249 94998 . - 0 ID=cds-WP_038273001.1;Parent=gene-LPH40_RS00435;Dbxref=Genbank:WP_038273001.1;Name=WP_038273001.1;Ontology_term=GO:0009451,GO:0008173;gbkey=CDS;gene=rlmB;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894443.1;locus_tag=LPH40_RS00435;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=WP_038273001.1;transl_table=11 NZ_CP087685.1 RefSeq gene 95382 97910 . - . ID=gene-LPH40_RS00440;Name=rnr;gbkey=Gene;gene=rnr;gene_biotype=protein_coding;locus_tag=LPH40_RS00440;old_locus_tag=LPH40_00440 NZ_CP087685.1 Protein Homology CDS 95382 97910 . - 0 ID=cds-WP_038272997.1;Parent=gene-LPH40_RS00440;Dbxref=Genbank:WP_038272997.1;Name=WP_038272997.1;Ontology_term=GO:0006401,GO:0008997;gbkey=CDS;gene=rnr;go_function=ribonuclease R activity|0008997||IEA;go_process=RNA catabolic process|0006401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851070.1;locus_tag=LPH40_RS00440;product=ribonuclease R;protein_id=WP_038272997.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 99017 99493 . + . ID=gene-LPH40_RS00445;Name=LPH40_RS00445;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS00445;old_locus_tag=LPH40_00445;partial=true;pseudo=true;start_range=.,99017 NZ_CP087685.1 Protein Homology CDS 99017 99493 . + 0 ID=cds-LPH40_RS00445;Parent=gene-LPH40_RS00445;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090827.1;locus_tag=LPH40_RS00445;partial=true;product=BRO family protein;pseudo=true;start_range=.,99017;transl_table=11 NZ_CP087685.1 RefSeq gene 99685 100194 . + . ID=gene-LPH40_RS00450;Name=LPH40_RS00450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00450;old_locus_tag=LPH40_00450 NZ_CP087685.1 Protein Homology CDS 99685 100194 . + 0 ID=cds-WP_114867133.1;Parent=gene-LPH40_RS00450;Dbxref=Genbank:WP_114867133.1;Name=WP_114867133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894761.1;locus_tag=LPH40_RS00450;product=lysozyme;protein_id=WP_114867133.1;transl_table=11 NZ_CP087685.1 RefSeq gene 100187 100513 . + . ID=gene-LPH40_RS00455;Name=LPH40_RS00455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00455;old_locus_tag=LPH40_00455 NZ_CP087685.1 Protein Homology CDS 100187 100513 . + 0 ID=cds-WP_038272608.1;Parent=gene-LPH40_RS00455;Dbxref=Genbank:WP_038272608.1;Name=WP_038272608.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852373.1;locus_tag=LPH40_RS00455;product=phage holin family protein;protein_id=WP_038272608.1;transl_table=11 NZ_CP087685.1 RefSeq gene 100503 100964 . + . ID=gene-LPH40_RS00460;Name=LPH40_RS00460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00460;old_locus_tag=LPH40_00460 NZ_CP087685.1 Protein Homology CDS 100503 100964 . + 0 ID=cds-WP_038272606.1;Parent=gene-LPH40_RS00460;Dbxref=Genbank:WP_038272606.1;Name=WP_038272606.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086887.1;locus_tag=LPH40_RS00460;product=hypothetical protein;protein_id=WP_038272606.1;transl_table=11 NZ_CP087685.1 RefSeq gene 100966 101181 . + . ID=gene-LPH40_RS00465;Name=LPH40_RS00465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00465;old_locus_tag=LPH40_00465 NZ_CP087685.1 Protein Homology CDS 100966 101181 . + 0 ID=cds-WP_038272603.1;Parent=gene-LPH40_RS00465;Dbxref=Genbank:WP_038272603.1;Name=WP_038272603.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085111.1;locus_tag=LPH40_RS00465;product=hypothetical protein;protein_id=WP_038272603.1;transl_table=11 NZ_CP087685.1 RefSeq gene 101186 101719 . + . ID=gene-LPH40_RS00470;Name=LPH40_RS00470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00470;old_locus_tag=LPH40_00470 NZ_CP087685.1 GeneMarkS-2+ CDS 101186 101719 . + 0 ID=cds-WP_051482374.1;Parent=gene-LPH40_RS00470;Dbxref=Genbank:WP_051482374.1;Name=WP_051482374.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00470;product=glycosyltransferase family A protein;protein_id=WP_051482374.1;transl_table=11 NZ_CP087685.1 RefSeq gene 101712 102218 . + . ID=gene-LPH40_RS00475;Name=LPH40_RS00475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00475;old_locus_tag=LPH40_00475 NZ_CP087685.1 GeneMarkS-2+ CDS 101712 102218 . + 0 ID=cds-WP_038272601.1;Parent=gene-LPH40_RS00475;Dbxref=Genbank:WP_038272601.1;Name=WP_038272601.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00475;product=hypothetical protein;protein_id=WP_038272601.1;transl_table=11 NZ_CP087685.1 RefSeq gene 102215 103048 . + . ID=gene-LPH40_RS00480;Name=LPH40_RS00480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00480;old_locus_tag=LPH40_00480 NZ_CP087685.1 Protein Homology CDS 102215 103048 . + 0 ID=cds-WP_200866213.1;Parent=gene-LPH40_RS00480;Dbxref=Genbank:WP_200866213.1;Name=WP_200866213.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF028088.2;locus_tag=LPH40_RS00480;product=tail fiber assembly protein;protein_id=WP_200866213.1;transl_table=11 NZ_CP087685.1 RefSeq gene 103258 103560 . + . ID=gene-LPH40_RS00485;Name=LPH40_RS00485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00485;old_locus_tag=LPH40_00485 NZ_CP087685.1 Protein Homology CDS 103258 103560 . + 0 ID=cds-WP_038272599.1;Parent=gene-LPH40_RS00485;Dbxref=Genbank:WP_038272599.1;Name=WP_038272599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574518.1;locus_tag=LPH40_RS00485;product=type II toxin-antitoxin system HigB family toxin;protein_id=WP_038272599.1;transl_table=11 NZ_CP087685.1 RefSeq gene 103564 103935 . + . ID=gene-LPH40_RS00490;Name=LPH40_RS00490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00490;old_locus_tag=LPH40_00490 NZ_CP087685.1 Protein Homology CDS 103564 103935 . + 0 ID=cds-WP_230428215.1;Parent=gene-LPH40_RS00490;Dbxref=Genbank:WP_230428215.1;Name=WP_230428215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008208406.1;locus_tag=LPH40_RS00490;product=transcriptional regulator;protein_id=WP_230428215.1;transl_table=11 NZ_CP087685.1 RefSeq gene 104284 104574 . + . ID=gene-LPH40_RS00495;Name=LPH40_RS00495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00495;old_locus_tag=LPH40_00495 NZ_CP087685.1 GeneMarkS-2+ CDS 104284 104574 . + 0 ID=cds-WP_152536656.1;Parent=gene-LPH40_RS00495;Dbxref=Genbank:WP_152536656.1;Name=WP_152536656.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00495;product=hypothetical protein;protein_id=WP_152536656.1;transl_table=11 NZ_CP087685.1 RefSeq gene 104594 104815 . + . ID=gene-LPH40_RS00500;Name=LPH40_RS00500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00500;old_locus_tag=LPH40_00500 NZ_CP087685.1 Protein Homology CDS 104594 104815 . + 0 ID=cds-WP_038272593.1;Parent=gene-LPH40_RS00500;Dbxref=Genbank:WP_038272593.1;Name=WP_038272593.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088612.1;locus_tag=LPH40_RS00500;product=EexN family lipoprotein;protein_id=WP_038272593.1;transl_table=11 NZ_CP087685.1 RefSeq gene 105674 105901 . + . ID=gene-LPH40_RS00505;Name=LPH40_RS00505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00505;old_locus_tag=LPH40_00505 NZ_CP087685.1 Protein Homology CDS 105674 105901 . + 0 ID=cds-WP_038272591.1;Parent=gene-LPH40_RS00505;Dbxref=Genbank:WP_038272591.1;Name=WP_038272591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157548.1;locus_tag=LPH40_RS00505;product=hypothetical protein;protein_id=WP_038272591.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 106020 108345 . + . ID=gene-LPH40_RS00510;Name=LPH40_RS00510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS00510;old_locus_tag=LPH40_00510;pseudo=true NZ_CP087685.1 Protein Homology CDS 106020 108345 . + 0 ID=cds-LPH40_RS00510;Parent=gene-LPH40_RS00510;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851372.1;locus_tag=LPH40_RS00510;product=Tex family protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 109299 109451 . + . ID=gene-LPH40_RS00515;Name=LPH40_RS00515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00515;old_locus_tag=LPH40_00515 NZ_CP087685.1 GeneMarkS-2+ CDS 109299 109451 . + 0 ID=cds-WP_201745808.1;Parent=gene-LPH40_RS00515;Dbxref=Genbank:WP_201745808.1;Name=WP_201745808.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00515;product=hypothetical protein;protein_id=WP_201745808.1;transl_table=11 NZ_CP087685.1 RefSeq gene 109524 109715 . - . ID=gene-LPH40_RS00520;Name=LPH40_RS00520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00520;old_locus_tag=LPH40_00520 NZ_CP087685.1 GeneMarkS-2+ CDS 109524 109715 . - 0 ID=cds-WP_201745809.1;Parent=gene-LPH40_RS00520;Dbxref=Genbank:WP_201745809.1;Name=WP_201745809.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00520;product=alpha/beta hydrolase;protein_id=WP_201745809.1;transl_table=11 NZ_CP087685.1 RefSeq gene 109884 111002 . - . ID=gene-LPH40_RS00525;Name=LPH40_RS00525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00525;old_locus_tag=LPH40_00525 NZ_CP087685.1 Protein Homology CDS 109884 111002 . - 0 ID=cds-WP_230428504.1;Parent=gene-LPH40_RS00525;Dbxref=Genbank:WP_230428504.1;Name=WP_230428504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019336814.1;locus_tag=LPH40_RS00525;product=MFS transporter;protein_id=WP_230428504.1;transl_table=11 NZ_CP087685.1 RefSeq gene 111282 112172 . + . ID=gene-LPH40_RS00530;Name=LPH40_RS00530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00530;old_locus_tag=LPH40_00530 NZ_CP087685.1 Protein Homology CDS 111282 112172 . + 0 ID=cds-WP_114867135.1;Parent=gene-LPH40_RS00530;Dbxref=Genbank:WP_114867135.1;Name=WP_114867135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006367409.1;locus_tag=LPH40_RS00530;product=LysR family transcriptional regulator;protein_id=WP_114867135.1;transl_table=11 NZ_CP087685.1 RefSeq gene 112416 112742 . - . ID=gene-LPH40_RS00535;Name=LPH40_RS00535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00535;old_locus_tag=LPH40_00535 NZ_CP087685.1 GeneMarkS-2+ CDS 112416 112742 . - 0 ID=cds-WP_038272586.1;Parent=gene-LPH40_RS00535;Dbxref=Genbank:WP_038272586.1;Name=WP_038272586.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00535;product=hypothetical protein;protein_id=WP_038272586.1;transl_table=11 NZ_CP087685.1 RefSeq gene 112799 114871 . + . ID=gene-LPH40_RS00540;Name=LPH40_RS00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00540;old_locus_tag=LPH40_00540 NZ_CP087685.1 Protein Homology CDS 112799 114871 . + 0 ID=cds-WP_038272583.1;Parent=gene-LPH40_RS00540;Dbxref=Genbank:WP_038272583.1;Name=WP_038272583.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237114.1;locus_tag=LPH40_RS00540;product=tetratricopeptide repeat protein;protein_id=WP_038272583.1;transl_table=11 NZ_CP087685.1 RefSeq gene 114959 115573 . + . ID=gene-LPH40_RS00545;Name=LPH40_RS00545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00545;old_locus_tag=LPH40_00545 NZ_CP087685.1 Protein Homology CDS 114959 115573 . + 0 ID=cds-WP_038272582.1;Parent=gene-LPH40_RS00545;Dbxref=Genbank:WP_038272582.1;Name=WP_038272582.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851370.1;locus_tag=LPH40_RS00545;product=YbhB/YbcL family Raf kinase inhibitor-like protein;protein_id=WP_038272582.1;transl_table=11 NZ_CP087685.1 RefSeq gene 117239 117775 . + . ID=gene-LPH40_RS00550;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=LPH40_RS00550;old_locus_tag=LPH40_00550 NZ_CP087685.1 Protein Homology CDS 117239 117775 . + 0 ID=cds-WP_038272580.1;Parent=gene-LPH40_RS00550;Dbxref=Genbank:WP_038272580.1;Name=WP_038272580.1;Ontology_term=GO:0006796,GO:0004427;gbkey=CDS;gene=ppa;go_function=inorganic diphosphate phosphatase activity|0004427||IEA;go_process=phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851369.1;locus_tag=LPH40_RS00550;product=inorganic diphosphatase;protein_id=WP_038272580.1;transl_table=11 NZ_CP087685.1 RefSeq gene 119429 120289 . - . ID=gene-LPH40_RS00555;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=LPH40_RS00555;old_locus_tag=LPH40_00555 NZ_CP087685.1 Protein Homology CDS 119429 120289 . - 0 ID=cds-WP_038272574.1;Parent=gene-LPH40_RS00555;Dbxref=Genbank:WP_038272574.1;Name=WP_038272574.1;Ontology_term=GO:0015036,GO:0005737;gbkey=CDS;gene=trxA;go_component=cytoplasm|0005737||IEA;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919399.1;locus_tag=LPH40_RS00555;product=thioredoxin;protein_id=WP_038272574.1;transl_table=11 NZ_CP087685.1 RefSeq gene 120465 121070 . + . ID=gene-LPH40_RS00560;Name=LPH40_RS00560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00560;old_locus_tag=LPH40_00560 NZ_CP087685.1 Protein Homology CDS 120465 121070 . + 0 ID=cds-WP_038272571.1;Parent=gene-LPH40_RS00560;Dbxref=Genbank:WP_038272571.1;Name=WP_038272571.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088593.1;locus_tag=LPH40_RS00560;product=DUF998 domain-containing protein;protein_id=WP_038272571.1;transl_table=11 NZ_CP087685.1 RefSeq gene 121154 123793 . + . ID=gene-LPH40_RS00565;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=LPH40_RS00565;old_locus_tag=LPH40_00565 NZ_CP087685.1 Protein Homology CDS 121154 123793 . + 0 ID=cds-WP_038272610.1;Parent=gene-LPH40_RS00565;Dbxref=Genbank:WP_038272610.1;Name=WP_038272610.1;Ontology_term=GO:0006429,GO:0004823,GO:0005737;gbkey=CDS;gene=leuS;go_component=cytoplasm|0005737||IEA;go_function=leucine-tRNA ligase activity|0004823||IEA;go_process=leucyl-tRNA aminoacylation|0006429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183388.1;locus_tag=LPH40_RS00565;product=leucine--tRNA ligase;protein_id=WP_038272610.1;transl_table=11 NZ_CP087685.1 RefSeq gene 123883 124485 . + . ID=gene-LPH40_RS00570;Name=lptE;gbkey=Gene;gene=lptE;gene_biotype=protein_coding;locus_tag=LPH40_RS00570;old_locus_tag=LPH40_00570 NZ_CP087685.1 Protein Homology CDS 123883 124485 . + 0 ID=cds-WP_038272569.1;Parent=gene-LPH40_RS00570;Dbxref=Genbank:WP_038272569.1;Name=WP_038272569.1;Ontology_term=GO:0043165,GO:0019867;gbkey=CDS;gene=lptE;go_component=outer membrane|0019867||IEA;go_process=Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088585.1;locus_tag=LPH40_RS00570;product=LPS assembly lipoprotein LptE;protein_id=WP_038272569.1;transl_table=11 NZ_CP087685.1 RefSeq gene 124496 125527 . + . ID=gene-LPH40_RS00575;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=LPH40_RS00575;old_locus_tag=LPH40_00575 NZ_CP087685.1 Protein Homology CDS 124496 125527 . + 0 ID=cds-WP_114867136.1;Parent=gene-LPH40_RS00575;Dbxref=Genbank:WP_114867136.1;Name=WP_114867136.1;Ontology_term=GO:0006260,GO:0003887,GO:0009360;gbkey=CDS;gene=holA;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116404.1;locus_tag=LPH40_RS00575;product=DNA polymerase III subunit delta;protein_id=WP_114867136.1;transl_table=11 NZ_CP087685.1 RefSeq gene 125556 126224 . + . ID=gene-LPH40_RS00580;Name=nadD;gbkey=Gene;gene=nadD;gene_biotype=protein_coding;locus_tag=LPH40_RS00580;old_locus_tag=LPH40_00580 NZ_CP087685.1 Protein Homology CDS 125556 126224 . + 0 ID=cds-WP_038273039.1;Parent=gene-LPH40_RS00580;Dbxref=Genbank:WP_038273039.1;Name=WP_038273039.1;Ontology_term=GO:0009435,GO:0016779;gbkey=CDS;gene=nadD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086142.1;locus_tag=LPH40_RS00580;product=nicotinate-nucleotide adenylyltransferase;protein_id=WP_038273039.1;transl_table=11 NZ_CP087685.1 RefSeq gene 126277 126678 . + . ID=gene-LPH40_RS00585;Name=rsfS;gbkey=Gene;gene=rsfS;gene_biotype=protein_coding;locus_tag=LPH40_RS00585;old_locus_tag=LPH40_00585 NZ_CP087685.1 Protein Homology CDS 126277 126678 . + 0 ID=cds-WP_038273036.1;Parent=gene-LPH40_RS00585;Dbxref=Genbank:WP_038273036.1;Name=WP_038273036.1;Ontology_term=GO:0017148,GO:0043022;gbkey=CDS;gene=rsfS;go_function=ribosome binding|0043022||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607331.1;locus_tag=LPH40_RS00585;product=ribosome silencing factor;protein_id=WP_038273036.1;transl_table=11 NZ_CP087685.1 RefSeq gene 126921 127094 . - . ID=gene-LPH40_RS00590;Name=LPH40_RS00590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00590;old_locus_tag=LPH40_00590 NZ_CP087685.1 Protein Homology CDS 126921 127094 . - 0 ID=cds-WP_114867137.1;Parent=gene-LPH40_RS00590;Dbxref=Genbank:WP_114867137.1;Name=WP_114867137.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086144.1;locus_tag=LPH40_RS00590;product=DUF5668 domain-containing protein;protein_id=WP_114867137.1;transl_table=11 NZ_CP087685.1 RefSeq gene 127132 127260 . - . ID=gene-LPH40_RS11910;Name=LPH40_RS11910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11910 NZ_CP087685.1 GeneMarkS-2+ CDS 127132 127260 . - 0 ID=cds-WP_267903150.1;Parent=gene-LPH40_RS11910;Dbxref=Genbank:WP_267903150.1;Name=WP_267903150.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11910;product=hypothetical protein;protein_id=WP_267903150.1;transl_table=11 NZ_CP087685.1 RefSeq gene 127896 129011 . + . ID=gene-LPH40_RS00595;Name=mltB;gbkey=Gene;gene=mltB;gene_biotype=protein_coding;locus_tag=LPH40_RS00595;old_locus_tag=LPH40_00595 NZ_CP087685.1 Protein Homology CDS 127896 129011 . + 0 ID=cds-WP_038273033.1;Parent=gene-LPH40_RS00595;Dbxref=Genbank:WP_038273033.1;Name=WP_038273033.1;Ontology_term=GO:0009253,GO:0016757;gbkey=CDS;gene=mltB;go_function=glycosyltransferase activity|0016757||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382650.1;locus_tag=LPH40_RS00595;product=lytic murein transglycosylase B;protein_id=WP_038273033.1;transl_table=11 NZ_CP087685.1 RefSeq gene 129008 130249 . + . ID=gene-LPH40_RS00600;Name=LPH40_RS00600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00600;old_locus_tag=LPH40_00600 NZ_CP087685.1 Protein Homology CDS 129008 130249 . + 0 ID=cds-WP_038273031.1;Parent=gene-LPH40_RS00600;Dbxref=Genbank:WP_038273031.1;Name=WP_038273031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894633.1;locus_tag=LPH40_RS00600;product=septal ring lytic transglycosylase RlpA family protein;protein_id=WP_038273031.1;transl_table=11 NZ_CP087685.1 RefSeq gene 130751 131359 . - . ID=gene-LPH40_RS00605;Name=LPH40_RS00605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00605;old_locus_tag=LPH40_00605 NZ_CP087685.1 Protein Homology CDS 130751 131359 . - 0 ID=cds-WP_038273050.1;Parent=gene-LPH40_RS00605;Dbxref=Genbank:WP_038273050.1;Name=WP_038273050.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300253.1;locus_tag=LPH40_RS00605;product=rhomboid family intramembrane serine protease;protein_id=WP_038273050.1;transl_table=11 NZ_CP087685.1 RefSeq gene 131767 132090 . - . ID=gene-LPH40_RS00610;Name=LPH40_RS00610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00610;old_locus_tag=LPH40_00610 NZ_CP087685.1 GeneMarkS-2+ CDS 131767 132090 . - 0 ID=cds-WP_038273029.1;Parent=gene-LPH40_RS00610;Dbxref=Genbank:WP_038273029.1;Name=WP_038273029.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00610;product=hypothetical protein;protein_id=WP_038273029.1;transl_table=11 NZ_CP087685.1 RefSeq gene 132102 132347 . + . ID=gene-LPH40_RS00615;Name=LPH40_RS00615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00615;old_locus_tag=LPH40_00615 NZ_CP087685.1 GeneMarkS-2+ CDS 132102 132347 . + 0 ID=cds-WP_230428217.1;Parent=gene-LPH40_RS00615;Dbxref=Genbank:WP_230428217.1;Name=WP_230428217.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00615;product=hypothetical protein;protein_id=WP_230428217.1;transl_table=11 NZ_CP087685.1 RefSeq gene 132467 132847 . - . ID=gene-LPH40_RS00620;Name=LPH40_RS00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00620;old_locus_tag=LPH40_00620 NZ_CP087685.1 Protein Homology CDS 132467 132847 . - 0 ID=cds-WP_038273027.1;Parent=gene-LPH40_RS00620;Dbxref=Genbank:WP_038273027.1;Name=WP_038273027.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098380.1;locus_tag=LPH40_RS00620;product=DUF596 domain-containing protein;protein_id=WP_038273027.1;transl_table=11 NZ_CP087685.1 RefSeq gene 132852 133124 . - . ID=gene-LPH40_RS00625;Name=LPH40_RS00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00625;old_locus_tag=LPH40_00625 NZ_CP087685.1 Protein Homology CDS 132852 133124 . - 0 ID=cds-WP_038273025.1;Parent=gene-LPH40_RS00625;Dbxref=Genbank:WP_038273025.1;Name=WP_038273025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337939.1;locus_tag=LPH40_RS00625;product=hypothetical protein;protein_id=WP_038273025.1;transl_table=11 NZ_CP087685.1 RefSeq gene 133284 133412 . - . ID=gene-LPH40_RS11915;Name=LPH40_RS11915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11915 NZ_CP087685.1 GeneMarkS-2+ CDS 133284 133412 . - 0 ID=cds-WP_267903151.1;Parent=gene-LPH40_RS11915;Dbxref=Genbank:WP_267903151.1;Name=WP_267903151.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11915;product=hypothetical protein;protein_id=WP_267903151.1;transl_table=11 NZ_CP087685.1 RefSeq gene 133384 133767 . - . ID=gene-LPH40_RS00630;Name=LPH40_RS00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00630;old_locus_tag=LPH40_00630 NZ_CP087685.1 Protein Homology CDS 133384 133767 . - 0 ID=cds-WP_038273048.1;Parent=gene-LPH40_RS00630;Dbxref=Genbank:WP_038273048.1;Name=WP_038273048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH40_RS00630;product=DUF596 domain-containing protein;protein_id=WP_038273048.1;transl_table=11 NZ_CP087685.1 RefSeq gene 133779 134216 . - . ID=gene-LPH40_RS00635;Name=LPH40_RS00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00635;old_locus_tag=LPH40_00635 NZ_CP087685.1 Protein Homology CDS 133779 134216 . - 0 ID=cds-WP_081755493.1;Parent=gene-LPH40_RS00635;Dbxref=Genbank:WP_081755493.1;Name=WP_081755493.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017408.2;locus_tag=LPH40_RS00635;product=DUF769 domain-containing protein;protein_id=WP_081755493.1;transl_table=11 NZ_CP087685.1 RefSeq gene 134158 134520 . - . ID=gene-LPH40_RS00640;Name=LPH40_RS00640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00640;old_locus_tag=LPH40_00640 NZ_CP087685.1 Protein Homology CDS 134158 134520 . - 0 ID=cds-WP_051482393.1;Parent=gene-LPH40_RS00640;Dbxref=Genbank:WP_051482393.1;Name=WP_051482393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH40_RS00640;product=DUF596 domain-containing protein;protein_id=WP_051482393.1;transl_table=11 NZ_CP087685.1 RefSeq gene 134532 134828 . - . ID=gene-LPH40_RS00645;Name=LPH40_RS00645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00645;old_locus_tag=LPH40_00645 NZ_CP087685.1 Protein Homology CDS 134532 134828 . - 0 ID=cds-WP_268746656.1;Parent=gene-LPH40_RS00645;Dbxref=Genbank:WP_268746656.1;Name=WP_268746656.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017408.2;locus_tag=LPH40_RS00645;product=DUF769 domain-containing protein;protein_id=WP_268746656.1;transl_table=11 NZ_CP087685.1 RefSeq gene 134902 135057 . - . ID=gene-LPH40_RS00650;Name=LPH40_RS00650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00650;old_locus_tag=LPH40_00650 NZ_CP087685.1 GeneMarkS-2+ CDS 134902 135057 . - 0 ID=cds-WP_160165232.1;Parent=gene-LPH40_RS00650;Dbxref=Genbank:WP_160165232.1;Name=WP_160165232.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00650;product=hypothetical protein;protein_id=WP_160165232.1;transl_table=11 NZ_CP087685.1 RefSeq gene 135029 135421 . - . ID=gene-LPH40_RS00655;Name=LPH40_RS00655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00655;old_locus_tag=LPH40_00655 NZ_CP087685.1 Protein Homology CDS 135029 135421 . - 0 ID=cds-WP_038273019.1;Parent=gene-LPH40_RS00655;Dbxref=Genbank:WP_038273019.1;Name=WP_038273019.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH40_RS00655;product=DUF596 domain-containing protein;protein_id=WP_038273019.1;transl_table=11 NZ_CP087685.1 RefSeq gene 135426 136559 . - . ID=gene-LPH40_RS00660;Name=LPH40_RS00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00660;old_locus_tag=LPH40_00660 NZ_CP087685.1 Protein Homology CDS 135426 136559 . - 0 ID=cds-WP_114867139.1;Parent=gene-LPH40_RS00660;Dbxref=Genbank:WP_114867139.1;Name=WP_114867139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382788.1;locus_tag=LPH40_RS00660;product=DUF769 domain-containing protein;protein_id=WP_114867139.1;transl_table=11 NZ_CP087685.1 RefSeq gene 136711 137259 . - . ID=gene-LPH40_RS00665;Name=LPH40_RS00665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00665;old_locus_tag=LPH40_00665 NZ_CP087685.1 GeneMarkS-2+ CDS 136711 137259 . - 0 ID=cds-WP_038273182.1;Parent=gene-LPH40_RS00665;Dbxref=Genbank:WP_038273182.1;Name=WP_038273182.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00665;product=hypothetical protein;protein_id=WP_038273182.1;transl_table=11 NZ_CP087685.1 RefSeq gene 137256 137570 . - . ID=gene-LPH40_RS00670;Name=LPH40_RS00670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00670;old_locus_tag=LPH40_00670 NZ_CP087685.1 GeneMarkS-2+ CDS 137256 137570 . - 0 ID=cds-WP_038273185.1;Parent=gene-LPH40_RS00670;Dbxref=Genbank:WP_038273185.1;Name=WP_038273185.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00670;product=hypothetical protein;protein_id=WP_038273185.1;transl_table=11 NZ_CP087685.1 RefSeq gene 137729 138118 . - . ID=gene-LPH40_RS00675;Name=LPH40_RS00675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00675;old_locus_tag=LPH40_00675 NZ_CP087685.1 Protein Homology CDS 137729 138118 . - 0 ID=cds-WP_038273188.1;Parent=gene-LPH40_RS00675;Dbxref=Genbank:WP_038273188.1;Name=WP_038273188.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH40_RS00675;product=DUF596 domain-containing protein;protein_id=WP_038273188.1;transl_table=11 NZ_CP087685.1 RefSeq gene 138130 139440 . - . ID=gene-LPH40_RS00680;Name=LPH40_RS00680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00680;old_locus_tag=LPH40_00680 NZ_CP087685.1 Protein Homology CDS 138130 139440 . - 0 ID=cds-WP_230428219.1;Parent=gene-LPH40_RS00680;Dbxref=Genbank:WP_230428219.1;Name=WP_230428219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382791.1;locus_tag=LPH40_RS00680;product=DUF769 domain-containing protein;protein_id=WP_230428219.1;transl_table=11 NZ_CP087685.1 RefSeq gene 139805 139969 . - . ID=gene-LPH40_RS00685;Name=LPH40_RS00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00685;old_locus_tag=LPH40_00685 NZ_CP087685.1 GeneMarkS-2+ CDS 139805 139969 . - 0 ID=cds-WP_160165238.1;Parent=gene-LPH40_RS00685;Dbxref=Genbank:WP_160165238.1;Name=WP_160165238.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00685;product=hypothetical protein;protein_id=WP_160165238.1;transl_table=11 NZ_CP087685.1 RefSeq gene 139941 140333 . - . ID=gene-LPH40_RS00690;Name=LPH40_RS00690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00690;old_locus_tag=LPH40_00690 NZ_CP087685.1 Protein Homology CDS 139941 140333 . - 0 ID=cds-WP_038273239.1;Parent=gene-LPH40_RS00690;Dbxref=Genbank:WP_038273239.1;Name=WP_038273239.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086150.1;locus_tag=LPH40_RS00690;product=DUF596 domain-containing protein;protein_id=WP_038273239.1;transl_table=11 NZ_CP087685.1 RefSeq gene 140345 140674 . - . ID=gene-LPH40_RS00695;Name=LPH40_RS00695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00695;old_locus_tag=LPH40_00695 NZ_CP087685.1 Protein Homology CDS 140345 140674 . - 0 ID=cds-WP_114867141.1;Parent=gene-LPH40_RS00695;Dbxref=Genbank:WP_114867141.1;Name=WP_114867141.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017408.2;locus_tag=LPH40_RS00695;product=DUF769 domain-containing protein;protein_id=WP_114867141.1;transl_table=11 NZ_CP087685.1 RefSeq gene 140739 141164 . - . ID=gene-LPH40_RS00700;Name=LPH40_RS00700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00700;old_locus_tag=LPH40_00700 NZ_CP087685.1 GeneMarkS-2+ CDS 140739 141164 . - 0 ID=cds-WP_038273237.1;Parent=gene-LPH40_RS00700;Dbxref=Genbank:WP_038273237.1;Name=WP_038273237.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00700;product=hypothetical protein;protein_id=WP_038273237.1;transl_table=11 NZ_CP087685.1 RefSeq gene 141161 144109 . - . ID=gene-LPH40_RS00705;Name=LPH40_RS00705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00705;old_locus_tag=LPH40_00705 NZ_CP087685.1 Protein Homology CDS 141161 144109 . - 0 ID=cds-WP_114867142.1;Parent=gene-LPH40_RS00705;Dbxref=Genbank:WP_114867142.1;Name=WP_114867142.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024728.2;locus_tag=LPH40_RS00705;product=hemagglutinin repeat-containing protein;protein_id=WP_114867142.1;transl_table=11 NZ_CP087685.1 RefSeq gene 144149 144970 . - . ID=gene-LPH40_RS00710;Name=LPH40_RS00710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00710;old_locus_tag=LPH40_00710 NZ_CP087685.1 Protein Homology CDS 144149 144970 . - 0 ID=cds-WP_114867143.1;Parent=gene-LPH40_RS00710;Dbxref=Genbank:WP_114867143.1;Name=WP_114867143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338067.1;locus_tag=LPH40_RS00710;product=DUF769 domain-containing protein;protein_id=WP_114867143.1;transl_table=11 NZ_CP087685.1 RefSeq gene 144979 145794 . - . ID=gene-LPH40_RS00715;Name=LPH40_RS00715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00715;old_locus_tag=LPH40_00715 NZ_CP087685.1 Protein Homology CDS 144979 145794 . - 0 ID=cds-WP_038273126.1;Parent=gene-LPH40_RS00715;Dbxref=Genbank:WP_038273126.1;Name=WP_038273126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089585.1;locus_tag=LPH40_RS00715;product=DUF769 domain-containing protein;protein_id=WP_038273126.1;transl_table=11 NZ_CP087685.1 RefSeq gene 145809 146624 . - . ID=gene-LPH40_RS00720;Name=LPH40_RS00720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00720;old_locus_tag=LPH40_00720 NZ_CP087685.1 Protein Homology CDS 145809 146624 . - 0 ID=cds-WP_038273128.1;Parent=gene-LPH40_RS00720;Dbxref=Genbank:WP_038273128.1;Name=WP_038273128.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852863.1;locus_tag=LPH40_RS00720;product=DUF769 domain-containing protein;protein_id=WP_038273128.1;transl_table=11 NZ_CP087685.1 RefSeq gene 146639 147463 . - . ID=gene-LPH40_RS00725;Name=LPH40_RS00725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00725;old_locus_tag=LPH40_00725 NZ_CP087685.1 Protein Homology CDS 146639 147463 . - 0 ID=cds-WP_038273131.1;Parent=gene-LPH40_RS00725;Dbxref=Genbank:WP_038273131.1;Name=WP_038273131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338067.1;locus_tag=LPH40_RS00725;product=DUF769 domain-containing protein;protein_id=WP_038273131.1;transl_table=11 NZ_CP087685.1 RefSeq gene 147472 148284 . - . ID=gene-LPH40_RS00730;Name=LPH40_RS00730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00730;old_locus_tag=LPH40_00730 NZ_CP087685.1 Protein Homology CDS 147472 148284 . - 0 ID=cds-WP_114867144.1;Parent=gene-LPH40_RS00730;Dbxref=Genbank:WP_114867144.1;Name=WP_114867144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852863.1;locus_tag=LPH40_RS00730;product=DUF769 domain-containing protein;protein_id=WP_114867144.1;transl_table=11 NZ_CP087685.1 RefSeq gene 148290 157655 . - . ID=gene-LPH40_RS00735;Name=LPH40_RS00735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00735;old_locus_tag=LPH40_00735 NZ_CP087685.1 Protein Homology CDS 148290 157655 . - 0 ID=cds-WP_230428220.1;Parent=gene-LPH40_RS00735;Dbxref=Genbank:WP_230428220.1;Name=WP_230428220.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098253.1;locus_tag=LPH40_RS00735;product=hemagglutinin repeat-containing protein;protein_id=WP_230428220.1;transl_table=11 NZ_CP087685.1 RefSeq gene 157615 158985 . - . ID=gene-LPH40_RS00740;Name=LPH40_RS00740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00740;old_locus_tag=LPH40_00740 NZ_CP087685.1 Protein Homology CDS 157615 158985 . - 0 ID=cds-WP_114867153.1;Parent=gene-LPH40_RS00740;Dbxref=Genbank:WP_114867153.1;Name=WP_114867153.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017658.2;locus_tag=LPH40_RS00740;product=filamentous hemagglutinin N-terminal domain-containing protein;protein_id=WP_114867153.1;transl_table=11 NZ_CP087685.1 RefSeq gene 159384 159653 . + . ID=gene-LPH40_RS00745;Name=LPH40_RS00745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00745;old_locus_tag=LPH40_00745 NZ_CP087685.1 Protein Homology CDS 159384 159653 . + 0 ID=cds-WP_038273253.1;Parent=gene-LPH40_RS00745;Dbxref=Genbank:WP_038273253.1;Name=WP_038273253.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001260984.1;locus_tag=LPH40_RS00745;product=type II toxin-antitoxin system ParD family antitoxin;protein_id=WP_038273253.1;transl_table=11 NZ_CP087685.1 RefSeq gene 159650 159970 . + . ID=gene-LPH40_RS00750;Name=LPH40_RS00750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00750;old_locus_tag=LPH40_00750 NZ_CP087685.1 Protein Homology CDS 159650 159970 . + 0 ID=cds-WP_038273255.1;Parent=gene-LPH40_RS00750;Dbxref=Genbank:WP_038273255.1;Name=WP_038273255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011117139.1;locus_tag=LPH40_RS00750;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_038273255.1;transl_table=11 NZ_CP087685.1 RefSeq gene 160049 160360 . - . ID=gene-LPH40_RS00755;Name=LPH40_RS00755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00755;old_locus_tag=LPH40_00755 NZ_CP087685.1 Protein Homology CDS 160049 160360 . - 0 ID=cds-WP_081755498.1;Parent=gene-LPH40_RS00755;Dbxref=Genbank:WP_081755498.1;Name=WP_081755498.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025298.2;locus_tag=LPH40_RS00755;product=DNA/RNA non-specific endonuclease;protein_id=WP_081755498.1;transl_table=11 NZ_CP087685.1 RefSeq gene 160297 160536 . - . ID=gene-LPH40_RS00760;Name=LPH40_RS00760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00760;old_locus_tag=LPH40_00760 NZ_CP087685.1 GeneMarkS-2+ CDS 160297 160536 . - 0 ID=cds-WP_114867147.1;Parent=gene-LPH40_RS00760;Dbxref=Genbank:WP_114867147.1;Name=WP_114867147.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00760;product=hypothetical protein;protein_id=WP_114867147.1;transl_table=11 NZ_CP087685.1 RefSeq gene 160951 161343 . - . ID=gene-LPH40_RS00765;Name=LPH40_RS00765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00765;old_locus_tag=LPH40_00765 NZ_CP087685.1 Protein Homology CDS 160951 161343 . - 0 ID=cds-WP_038273145.1;Parent=gene-LPH40_RS00765;Dbxref=Genbank:WP_038273145.1;Name=WP_038273145.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086150.1;locus_tag=LPH40_RS00765;product=DUF596 domain-containing protein;protein_id=WP_038273145.1;transl_table=11 NZ_CP087685.1 RefSeq gene 161355 161708 . - . ID=gene-LPH40_RS00770;Name=LPH40_RS00770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00770;old_locus_tag=LPH40_00770 NZ_CP087685.1 Protein Homology CDS 161355 161708 . - 0 ID=cds-WP_114867148.1;Parent=gene-LPH40_RS00770;Dbxref=Genbank:WP_114867148.1;Name=WP_114867148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090789.1;locus_tag=LPH40_RS00770;product=DUF769 domain-containing protein;protein_id=WP_114867148.1;transl_table=11 NZ_CP087685.1 RefSeq gene 161788 162174 . - . ID=gene-LPH40_RS00775;Name=LPH40_RS00775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00775;old_locus_tag=LPH40_00775 NZ_CP087685.1 Protein Homology CDS 161788 162174 . - 0 ID=cds-WP_038273143.1;Parent=gene-LPH40_RS00775;Dbxref=Genbank:WP_038273143.1;Name=WP_038273143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088333.1;locus_tag=LPH40_RS00775;product=DUF596 domain-containing protein;protein_id=WP_038273143.1;transl_table=11 NZ_CP087685.1 RefSeq gene 162179 162511 . - . ID=gene-LPH40_RS00780;Name=LPH40_RS00780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00780;old_locus_tag=LPH40_00780 NZ_CP087685.1 Protein Homology CDS 162179 162511 . - 0 ID=cds-WP_114867149.1;Parent=gene-LPH40_RS00780;Dbxref=Genbank:WP_114867149.1;Name=WP_114867149.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017408.2;locus_tag=LPH40_RS00780;product=DUF769 domain-containing protein;protein_id=WP_114867149.1;transl_table=11 NZ_CP087685.1 RefSeq gene 162577 163014 . - . ID=gene-LPH40_RS00785;Name=LPH40_RS00785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00785;old_locus_tag=LPH40_00785 NZ_CP087685.1 GeneMarkS-2+ CDS 162577 163014 . - 0 ID=cds-WP_038273137.1;Parent=gene-LPH40_RS00785;Dbxref=Genbank:WP_038273137.1;Name=WP_038273137.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00785;product=hypothetical protein;protein_id=WP_038273137.1;transl_table=11 NZ_CP087685.1 RefSeq gene 163011 164186 . - . ID=gene-LPH40_RS00790;Name=LPH40_RS00790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00790;old_locus_tag=LPH40_00790 NZ_CP087685.1 Protein Homology CDS 163011 164186 . - 0 ID=cds-WP_205395216.1;Parent=gene-LPH40_RS00790;Dbxref=Genbank:WP_205395216.1;Name=WP_205395216.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382788.1;locus_tag=LPH40_RS00790;product=DNA/RNA non-specific endonuclease;protein_id=WP_205395216.1;transl_table=11 NZ_CP087685.1 RefSeq gene 164485 164649 . - . ID=gene-LPH40_RS00795;Name=LPH40_RS00795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00795;old_locus_tag=LPH40_00795 NZ_CP087685.1 GeneMarkS-2+ CDS 164485 164649 . - 0 ID=cds-WP_160165237.1;Parent=gene-LPH40_RS00795;Dbxref=Genbank:WP_160165237.1;Name=WP_160165237.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00795;product=hypothetical protein;protein_id=WP_160165237.1;transl_table=11 NZ_CP087685.1 RefSeq gene 164621 165013 . - . ID=gene-LPH40_RS00800;Name=LPH40_RS00800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00800;old_locus_tag=LPH40_00800 NZ_CP087685.1 Protein Homology CDS 164621 165013 . - 0 ID=cds-WP_038273217.1;Parent=gene-LPH40_RS00800;Dbxref=Genbank:WP_038273217.1;Name=WP_038273217.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894641.1;locus_tag=LPH40_RS00800;product=DUF596 domain-containing protein;protein_id=WP_038273217.1;transl_table=11 NZ_CP087685.1 RefSeq gene 165025 165378 . - . ID=gene-LPH40_RS00805;Name=LPH40_RS00805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00805;old_locus_tag=LPH40_00805 NZ_CP087685.1 Protein Homology CDS 165025 165378 . - 0 ID=cds-WP_114867150.1;Parent=gene-LPH40_RS00805;Dbxref=Genbank:WP_114867150.1;Name=WP_114867150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098383.1;locus_tag=LPH40_RS00805;product=DUF769 domain-containing protein;protein_id=WP_114867150.1;transl_table=11 NZ_CP087685.1 RefSeq gene 165458 165850 . - . ID=gene-LPH40_RS00810;Name=LPH40_RS00810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00810;old_locus_tag=LPH40_00810 NZ_CP087685.1 Protein Homology CDS 165458 165850 . - 0 ID=cds-WP_038273215.1;Parent=gene-LPH40_RS00810;Dbxref=Genbank:WP_038273215.1;Name=WP_038273215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382790.1;locus_tag=LPH40_RS00810;product=DUF596 domain-containing protein;protein_id=WP_038273215.1;transl_table=11 NZ_CP087685.1 RefSeq gene 165862 166998 . - . ID=gene-LPH40_RS00815;Name=LPH40_RS00815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00815;old_locus_tag=LPH40_00815 NZ_CP087685.1 Protein Homology CDS 165862 166998 . - 0 ID=cds-WP_114867151.1;Parent=gene-LPH40_RS00815;Dbxref=Genbank:WP_114867151.1;Name=WP_114867151.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382788.1;locus_tag=LPH40_RS00815;product=DUF769 domain-containing protein;protein_id=WP_114867151.1;transl_table=11 NZ_CP087685.1 RefSeq gene 167152 167685 . - . ID=gene-LPH40_RS00820;Name=LPH40_RS00820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00820;old_locus_tag=LPH40_00820 NZ_CP087685.1 GeneMarkS-2+ CDS 167152 167685 . - 0 ID=cds-WP_038273268.1;Parent=gene-LPH40_RS00820;Dbxref=Genbank:WP_038273268.1;Name=WP_038273268.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00820;product=hypothetical protein;protein_id=WP_038273268.1;transl_table=11 NZ_CP087685.1 RefSeq gene 167682 169043 . - . ID=gene-LPH40_RS00825;Name=LPH40_RS00825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00825;old_locus_tag=LPH40_00825 NZ_CP087685.1 Protein Homology CDS 167682 169043 . - 0 ID=cds-WP_230428221.1;Parent=gene-LPH40_RS00825;Dbxref=Genbank:WP_230428221.1;Name=WP_230428221.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382789.1;locus_tag=LPH40_RS00825;product=DUF769 domain-containing protein;protein_id=WP_230428221.1;transl_table=11 NZ_CP087685.1 RefSeq gene 169544 169936 . - . ID=gene-LPH40_RS00830;Name=LPH40_RS00830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00830;old_locus_tag=LPH40_00830 NZ_CP087685.1 Protein Homology CDS 169544 169936 . - 0 ID=cds-WP_038273304.1;Parent=gene-LPH40_RS00830;Dbxref=Genbank:WP_038273304.1;Name=WP_038273304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH40_RS00830;product=DUF596 domain-containing protein;protein_id=WP_038273304.1;transl_table=11 NZ_CP087685.1 RefSeq gene 169948 179337 . - . ID=gene-LPH40_RS00835;Name=LPH40_RS00835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00835;old_locus_tag=LPH40_00835 NZ_CP087685.1 Protein Homology CDS 169948 179337 . - 0 ID=cds-WP_114867152.1;Parent=gene-LPH40_RS00835;Dbxref=Genbank:WP_114867152.1;Name=WP_114867152.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024728.2;locus_tag=LPH40_RS00835;product=hemagglutinin repeat-containing protein;protein_id=WP_114867152.1;transl_table=11 NZ_CP087685.1 RefSeq gene 179297 180667 . - . ID=gene-LPH40_RS00840;Name=LPH40_RS00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00840;old_locus_tag=LPH40_00840 NZ_CP087685.1 Protein Homology CDS 179297 180667 . - 0 ID=cds-WP_114867153.1-2;Parent=gene-LPH40_RS00840;Dbxref=Genbank:WP_114867153.1;Name=WP_114867153.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017658.2;locus_tag=LPH40_RS00840;product=filamentous hemagglutinin N-terminal domain-containing protein;protein_id=WP_114867153.1;transl_table=11 NZ_CP087685.1 RefSeq gene 180962 181174 . + . ID=gene-LPH40_RS00845;Name=LPH40_RS00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00845;old_locus_tag=LPH40_00845 NZ_CP087685.1 GeneMarkS-2+ CDS 180962 181174 . + 0 ID=cds-WP_162814100.1;Parent=gene-LPH40_RS00845;Dbxref=Genbank:WP_162814100.1;Name=WP_162814100.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00845;product=hypothetical protein;protein_id=WP_162814100.1;transl_table=11 NZ_CP087685.1 RefSeq gene 181181 181543 . + . ID=gene-LPH40_RS00850;Name=LPH40_RS00850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00850;old_locus_tag=LPH40_00850 NZ_CP087685.1 GeneMarkS-2+ CDS 181181 181543 . + 0 ID=cds-WP_152536614.1;Parent=gene-LPH40_RS00850;Dbxref=Genbank:WP_152536614.1;Name=WP_152536614.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00850;product=hypothetical protein;protein_id=WP_152536614.1;transl_table=11 NZ_CP087685.1 RefSeq gene 181715 181840 . + . ID=gene-LPH40_RS11920;Name=LPH40_RS11920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11920 NZ_CP087685.1 GeneMarkS-2+ CDS 181715 181840 . + 0 ID=cds-WP_267903152.1;Parent=gene-LPH40_RS11920;Dbxref=Genbank:WP_267903152.1;Name=WP_267903152.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11920;product=hypothetical protein;protein_id=WP_267903152.1;transl_table=11 NZ_CP087685.1 RefSeq gene 182510 183142 . + . ID=gene-LPH40_RS00855;Name=LPH40_RS00855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00855;old_locus_tag=LPH40_00855 NZ_CP087685.1 Protein Homology CDS 182510 183142 . + 0 ID=cds-WP_038271208.1;Parent=gene-LPH40_RS00855;Dbxref=Genbank:WP_038271208.1;Name=WP_038271208.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013933.2;locus_tag=LPH40_RS00855;product=LysE family translocator;protein_id=WP_038271208.1;transl_table=11 NZ_CP087685.1 RefSeq gene 183516 184436 . + . ID=gene-LPH40_RS00860;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=LPH40_RS00860;old_locus_tag=LPH40_00860 NZ_CP087685.1 Protein Homology CDS 183516 184436 . + 0 ID=cds-WP_038271207.1;Parent=gene-LPH40_RS00860;Dbxref=Genbank:WP_038271207.1;Name=WP_038271207.1;Ontology_term=GO:0036211,GO:0008757;gbkey=CDS;gene=prmA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088330.1;locus_tag=LPH40_RS00860;product=50S ribosomal protein L11 methyltransferase;protein_id=WP_038271207.1;transl_table=11 NZ_CP087685.1 RefSeq gene 184568 185125 . + . ID=gene-LPH40_RS00865;Name=LPH40_RS00865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00865;old_locus_tag=LPH40_00865 NZ_CP087685.1 GeneMarkS-2+ CDS 184568 185125 . + 0 ID=cds-WP_152536613.1;Parent=gene-LPH40_RS00865;Dbxref=Genbank:WP_152536613.1;Name=WP_152536613.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00865;product=hypothetical protein;protein_id=WP_152536613.1;transl_table=11 NZ_CP087685.1 RefSeq gene 185260 185703 . + . ID=gene-LPH40_RS00870;Name=LPH40_RS00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00870;old_locus_tag=LPH40_00870 NZ_CP087685.1 Protein Homology CDS 185260 185703 . + 0 ID=cds-WP_038271205.1;Parent=gene-LPH40_RS00870;Dbxref=Genbank:WP_038271205.1;Name=WP_038271205.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851337.1;locus_tag=LPH40_RS00870;product=hypothetical protein;protein_id=WP_038271205.1;transl_table=11 NZ_CP087685.1 RefSeq gene 186309 186875 . + . ID=gene-LPH40_RS00875;Name=yeiP;gbkey=Gene;gene=yeiP;gene_biotype=protein_coding;locus_tag=LPH40_RS00875;old_locus_tag=LPH40_00875 NZ_CP087685.1 Protein Homology CDS 186309 186875 . + 0 ID=cds-WP_114867220.1;Parent=gene-LPH40_RS00875;Dbxref=Genbank:WP_114867220.1;Name=WP_114867220.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=yeiP;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009603592.1;locus_tag=LPH40_RS00875;product=elongation factor P-like protein YeiP;protein_id=WP_114867220.1;transl_table=11 NZ_CP087685.1 RefSeq gene 187018 188406 . - . ID=gene-LPH40_RS00880;Name=LPH40_RS00880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00880;old_locus_tag=LPH40_00880 NZ_CP087685.1 Protein Homology CDS 187018 188406 . - 0 ID=cds-WP_038271203.1;Parent=gene-LPH40_RS00880;Dbxref=Genbank:WP_038271203.1;Name=WP_038271203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019399725.1;locus_tag=LPH40_RS00880;product=FAD-binding oxidoreductase;protein_id=WP_038271203.1;transl_table=11 NZ_CP087685.1 RefSeq gene 188589 189830 . + . ID=gene-LPH40_RS00885;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;locus_tag=LPH40_RS00885;old_locus_tag=LPH40_00885 NZ_CP087685.1 Protein Homology CDS 188589 189830 . + 0 ID=cds-WP_038271202.1;Parent=gene-LPH40_RS00885;Dbxref=Genbank:WP_038271202.1;Name=WP_038271202.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=serA;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915394.1;locus_tag=LPH40_RS00885;product=phosphoglycerate dehydrogenase;protein_id=WP_038271202.1;transl_table=11 NZ_CP087685.1 RefSeq gene 190293 191765 . + . ID=gene-LPH40_RS00890;Name=LPH40_RS00890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00890;old_locus_tag=LPH40_00890 NZ_CP087685.1 Protein Homology CDS 190293 191765 . + 0 ID=cds-WP_038271201.1;Parent=gene-LPH40_RS00890;Dbxref=Genbank:WP_038271201.1;Name=WP_038271201.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036992.1;locus_tag=LPH40_RS00890;product=amino acid permease;protein_id=WP_038271201.1;transl_table=11 NZ_CP087685.1 RefSeq gene 191837 193261 . + . ID=gene-LPH40_RS00895;Name=LPH40_RS00895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00895;old_locus_tag=LPH40_00895 NZ_CP087685.1 Protein Homology CDS 191837 193261 . + 0 ID=cds-WP_038271200.1;Parent=gene-LPH40_RS00895;Dbxref=Genbank:WP_038271200.1;Name=WP_038271200.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851332.1;locus_tag=LPH40_RS00895;product=amino acid permease;protein_id=WP_038271200.1;transl_table=11 NZ_CP087685.1 RefSeq gene 193299 193955 . + . ID=gene-LPH40_RS00900;Name=LPH40_RS00900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00900;old_locus_tag=LPH40_00900 NZ_CP087685.1 Protein Homology CDS 193299 193955 . + 0 ID=cds-WP_038271199.1;Parent=gene-LPH40_RS00900;Dbxref=Genbank:WP_038271199.1;Name=WP_038271199.1;Ontology_term=GO:0019509,GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851331.1;locus_tag=LPH40_RS00900;product=methylthioribulose 1-phosphate dehydratase;protein_id=WP_038271199.1;transl_table=11 NZ_CP087685.1 RefSeq gene 193991 194557 . + . ID=gene-LPH40_RS00905;Name=LPH40_RS00905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00905;old_locus_tag=LPH40_00905 NZ_CP087685.1 Protein Homology CDS 193991 194557 . + 0 ID=cds-WP_038271198.1;Parent=gene-LPH40_RS00905;Dbxref=Genbank:WP_038271198.1;Name=WP_038271198.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571451.1;locus_tag=LPH40_RS00905;product=acireductone dioxygenase;protein_id=WP_038271198.1;transl_table=11 NZ_CP087685.1 RefSeq gene 194560 195258 . + . ID=gene-LPH40_RS00910;Name=mtnC;gbkey=Gene;gene=mtnC;gene_biotype=protein_coding;locus_tag=LPH40_RS00910;old_locus_tag=LPH40_00910 NZ_CP087685.1 Protein Homology CDS 194560 195258 . + 0 ID=cds-WP_038271197.1;Parent=gene-LPH40_RS00910;Dbxref=Genbank:WP_038271197.1;Name=WP_038271197.1;Ontology_term=GO:0019509,GO:0016791,GO:0016862;gbkey=CDS;gene=mtnC;go_function=phosphatase activity|0016791||IEA,intramolecular oxidoreductase activity%2C interconverting keto- and enol-groups|0016862||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303202.1;locus_tag=LPH40_RS00910;product=acireductone synthase;protein_id=WP_038271197.1;transl_table=11 NZ_CP087685.1 RefSeq gene 195397 195579 . - . ID=gene-LPH40_RS00915;Name=LPH40_RS00915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00915;old_locus_tag=LPH40_00915 NZ_CP087685.1 GeneMarkS-2+ CDS 195397 195579 . - 0 ID=cds-WP_038271196.1;Parent=gene-LPH40_RS00915;Dbxref=Genbank:WP_038271196.1;Name=WP_038271196.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00915;product=hypothetical protein;protein_id=WP_038271196.1;transl_table=11 NZ_CP087685.1 RefSeq gene 196007 196171 . - . ID=gene-LPH40_RS00920;Name=LPH40_RS00920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00920;old_locus_tag=LPH40_00920 NZ_CP087685.1 GeneMarkS-2+ CDS 196007 196171 . - 0 ID=cds-WP_160199356.1;Parent=gene-LPH40_RS00920;Dbxref=Genbank:WP_160199356.1;Name=WP_160199356.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00920;product=hypothetical protein;protein_id=WP_160199356.1;transl_table=11 NZ_CP087685.1 RefSeq gene 196414 197382 . + . ID=gene-LPH40_RS00925;Name=LPH40_RS00925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00925;old_locus_tag=LPH40_00925 NZ_CP087685.1 Protein Homology CDS 196414 197382 . + 0 ID=cds-WP_081755435.1;Parent=gene-LPH40_RS00925;Dbxref=Genbank:WP_081755435.1;Name=WP_081755435.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997416.1;locus_tag=LPH40_RS00925;product=peptidase C13;protein_id=WP_081755435.1;transl_table=11 NZ_CP087685.1 RefSeq gene 198267 198542 . + . ID=gene-LPH40_RS00930;Name=LPH40_RS00930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00930;old_locus_tag=LPH40_00930 NZ_CP087685.1 GeneMarkS-2+ CDS 198267 198542 . + 0 ID=cds-WP_038271193.1;Parent=gene-LPH40_RS00930;Dbxref=Genbank:WP_038271193.1;Name=WP_038271193.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00930;product=hypothetical protein;protein_id=WP_038271193.1;transl_table=11 NZ_CP087685.1 RefSeq gene 199173 199793 . - . ID=gene-LPH40_RS00935;Name=hisIE;gbkey=Gene;gene=hisIE;gene_biotype=protein_coding;locus_tag=LPH40_RS00935;old_locus_tag=LPH40_00935 NZ_CP087685.1 Protein Homology CDS 199173 199793 . - 0 ID=cds-WP_038271192.1;Parent=gene-LPH40_RS00935;Dbxref=Genbank:WP_038271192.1;Name=WP_038271192.1;Ontology_term=GO:0000105,GO:0004635,GO:0004636;gbkey=CDS;gene=hisIE;go_function=phosphoribosyl-AMP cyclohydrolase activity|0004635||IEA,phosphoribosyl-ATP diphosphatase activity|0004636||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851328.1;locus_tag=LPH40_RS00935;product=bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE;protein_id=WP_038271192.1;transl_table=11 NZ_CP087685.1 RefSeq gene 199783 200559 . - . ID=gene-LPH40_RS00940;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=LPH40_RS00940;old_locus_tag=LPH40_00940 NZ_CP087685.1 Protein Homology CDS 199783 200559 . - 0 ID=cds-WP_038271191.1;Parent=gene-LPH40_RS00940;Dbxref=Genbank:WP_038271191.1;Name=WP_038271191.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisF;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503177.1;locus_tag=LPH40_RS00940;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=WP_038271191.1;transl_table=11 NZ_CP087685.1 RefSeq gene 200669 201478 . - . ID=gene-LPH40_RS00945;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;locus_tag=LPH40_RS00945;old_locus_tag=LPH40_00945 NZ_CP087685.1 Protein Homology CDS 200669 201478 . - 0 ID=cds-WP_038271190.1;Parent=gene-LPH40_RS00945;Dbxref=Genbank:WP_038271190.1;Name=WP_038271190.1;Ontology_term=GO:0000105,GO:0003949;gbkey=CDS;gene=hisA;go_function=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity|0003949||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083405.1;locus_tag=LPH40_RS00945;product=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase;protein_id=WP_038271190.1;transl_table=11 NZ_CP087685.1 RefSeq gene 201475 202077 . - . ID=gene-LPH40_RS00950;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=LPH40_RS00950;old_locus_tag=LPH40_00950 NZ_CP087685.1 Protein Homology CDS 201475 202077 . - 0 ID=cds-WP_038271189.1;Parent=gene-LPH40_RS00950;Dbxref=Genbank:WP_038271189.1;Name=WP_038271189.1;Ontology_term=GO:0000105,GO:0000107,GO:0016884;gbkey=CDS;gene=hisH;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA,carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor|0016884||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019661417.1;locus_tag=LPH40_RS00950;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=WP_038271189.1;transl_table=11 NZ_CP087685.1 RefSeq gene 202074 203201 . - . ID=gene-LPH40_RS00955;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;locus_tag=LPH40_RS00955;old_locus_tag=LPH40_00955 NZ_CP087685.1 Protein Homology CDS 202074 203201 . - 0 ID=cds-WP_038271188.1;Parent=gene-LPH40_RS00955;Dbxref=Genbank:WP_038271188.1;Name=WP_038271188.1;Ontology_term=GO:0000105,GO:0004401,GO:0004424;gbkey=CDS;gene=hisB;go_function=histidinol-phosphatase activity|0004401||IEA,imidazoleglycerol-phosphate dehydratase activity|0004424||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571443.1;locus_tag=LPH40_RS00955;product=bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB;protein_id=WP_038271188.1;transl_table=11 NZ_CP087685.1 RefSeq gene 203198 204295 . - . ID=gene-LPH40_RS00960;Name=hisC;gbkey=Gene;gene=hisC;gene_biotype=protein_coding;locus_tag=LPH40_RS00960;old_locus_tag=LPH40_00960 NZ_CP087685.1 Protein Homology CDS 203198 204295 . - 0 ID=cds-WP_038271187.1;Parent=gene-LPH40_RS00960;Dbxref=Genbank:WP_038271187.1;Name=WP_038271187.1;Ontology_term=GO:0000105,GO:0004400;gbkey=CDS;gene=hisC;go_function=histidinol-phosphate transaminase activity|0004400||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083408.1;locus_tag=LPH40_RS00960;product=histidinol-phosphate transaminase;protein_id=WP_038271187.1;transl_table=11 NZ_CP087685.1 RefSeq gene 204292 205587 . - . ID=gene-LPH40_RS00965;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=LPH40_RS00965;old_locus_tag=LPH40_00965 NZ_CP087685.1 Protein Homology CDS 204292 205587 . - 0 ID=cds-WP_038271186.1;Parent=gene-LPH40_RS00965;Dbxref=Genbank:WP_038271186.1;Name=WP_038271186.1;Ontology_term=GO:0000105,GO:0004399;gbkey=CDS;gene=hisD;go_function=histidinol dehydrogenase activity|0004399||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155317.1;locus_tag=LPH40_RS00965;product=histidinol dehydrogenase;protein_id=WP_038271186.1;transl_table=11 NZ_CP087685.1 RefSeq gene 205584 206498 . - . ID=gene-LPH40_RS00970;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=LPH40_RS00970;old_locus_tag=LPH40_00970 NZ_CP087685.1 Protein Homology CDS 205584 206498 . - 0 ID=cds-WP_038271185.1;Parent=gene-LPH40_RS00970;Dbxref=Genbank:WP_038271185.1;Name=WP_038271185.1;Ontology_term=GO:0000105,GO:0003879;gbkey=CDS;gene=hisG;go_function=ATP phosphoribosyltransferase activity|0003879||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237692.1;locus_tag=LPH40_RS00970;product=ATP phosphoribosyltransferase;protein_id=WP_038271185.1;transl_table=11 NZ_CP087685.1 RefSeq gene 206508 206834 . - . ID=gene-LPH40_RS00975;Name=LPH40_RS00975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00975;old_locus_tag=LPH40_00975 NZ_CP087685.1 Protein Homology CDS 206508 206834 . - 0 ID=cds-WP_038271184.1;Parent=gene-LPH40_RS00975;Dbxref=Genbank:WP_038271184.1;Name=WP_038271184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017908286.1;locus_tag=LPH40_RS00975;product=YerC/YecD family TrpR-related protein;protein_id=WP_038271184.1;transl_table=11 NZ_CP087685.1 RefSeq gene 207383 207625 . - . ID=gene-LPH40_RS00980;Name=LPH40_RS00980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00980;old_locus_tag=LPH40_00980 NZ_CP087685.1 GeneMarkS-2+ CDS 207383 207625 . - 0 ID=cds-WP_038271183.1;Parent=gene-LPH40_RS00980;Dbxref=Genbank:WP_038271183.1;Name=WP_038271183.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS00980;product=hypothetical protein;protein_id=WP_038271183.1;transl_table=11 NZ_CP087685.1 RefSeq gene 207628 209028 . - . ID=gene-LPH40_RS00985;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=LPH40_RS00985;old_locus_tag=LPH40_00985 NZ_CP087685.1 Protein Homology CDS 207628 209028 . - 0 ID=cds-WP_038271182.1;Parent=gene-LPH40_RS00985;Dbxref=Genbank:WP_038271182.1;Name=WP_038271182.1;Ontology_term=GO:0006427,GO:0004821,GO:0005737;gbkey=CDS;gene=hisS;go_component=cytoplasm|0005737||IEA;go_function=histidine-tRNA ligase activity|0004821||IEA;go_process=histidyl-tRNA aminoacylation|0006427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851319.1;locus_tag=LPH40_RS00985;product=histidine--tRNA ligase;protein_id=WP_038271182.1;transl_table=11 NZ_CP087685.1 RefSeq gene 209392 210684 . - . ID=gene-LPH40_RS00990;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=LPH40_RS00990;old_locus_tag=LPH40_00990 NZ_CP087685.1 Protein Homology CDS 209392 210684 . - 0 ID=cds-WP_038271220.1;Parent=gene-LPH40_RS00990;Dbxref=Genbank:WP_038271220.1;Name=WP_038271220.1;Ontology_term=GO:0009088,GO:0004795;gbkey=CDS;gene=thrC;go_function=threonine synthase activity|0004795||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088310.1;locus_tag=LPH40_RS00990;product=threonine synthase;protein_id=WP_038271220.1;transl_table=11 NZ_CP087685.1 RefSeq gene 210736 211704 . - . ID=gene-LPH40_RS00995;Name=LPH40_RS00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS00995;old_locus_tag=LPH40_00995 NZ_CP087685.1 Protein Homology CDS 210736 211704 . - 0 ID=cds-WP_038271181.1;Parent=gene-LPH40_RS00995;Dbxref=Genbank:WP_038271181.1;Name=WP_038271181.1;Ontology_term=GO:0006566,GO:0004413,GO:0005524;gbkey=CDS;go_function=homoserine kinase activity|0004413||IEA,ATP binding|0005524||IEA;go_process=threonine metabolic process|0006566||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894672.1;locus_tag=LPH40_RS00995;product=homoserine kinase;protein_id=WP_038271181.1;transl_table=11 NZ_CP087685.1 RefSeq gene 211701 214208 . - . ID=gene-LPH40_RS01000;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;locus_tag=LPH40_RS01000;old_locus_tag=LPH40_01000 NZ_CP087685.1 Protein Homology CDS 211701 214208 . - 0 ID=cds-WP_051482310.1;Parent=gene-LPH40_RS01000;Dbxref=Genbank:WP_051482310.1;Name=WP_051482310.1;Ontology_term=GO:0008652,GO:0009067,GO:0004072,GO:0004412,GO:0050661;gbkey=CDS;gene=thrA;go_function=aspartate kinase activity|0004072||IEA,homoserine dehydrogenase activity|0004412||IEA,NADP binding|0050661||IEA;go_process=amino acid biosynthetic process|0008652||IEA,aspartate family amino acid biosynthetic process|0009067||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851316.1;locus_tag=LPH40_RS01000;product=bifunctional aspartate kinase/homoserine dehydrogenase I;protein_id=WP_051482310.1;transl_table=11 NZ_CP087685.1 RefSeq gene 214299 214484 . - . ID=gene-LPH40_RS01005;Name=LPH40_RS01005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01005;old_locus_tag=LPH40_01005 NZ_CP087685.1 GeneMarkS-2+ CDS 214299 214484 . - 0 ID=cds-WP_152536612.1;Parent=gene-LPH40_RS01005;Dbxref=Genbank:WP_152536612.1;Name=WP_152536612.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01005;product=hypothetical protein;protein_id=WP_152536612.1;transl_table=11 NZ_CP087685.1 RefSeq gene 214699 215637 . - . ID=gene-LPH40_RS01010;Name=LPH40_RS01010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01010;old_locus_tag=LPH40_01010 NZ_CP087685.1 Protein Homology CDS 214699 215637 . - 0 ID=cds-WP_038271179.1;Parent=gene-LPH40_RS01010;Dbxref=Genbank:WP_038271179.1;Name=WP_038271179.1;Ontology_term=GO:0006207,GO:0006520,GO:0004070,GO:0016597;gbkey=CDS;go_function=aspartate carbamoyltransferase activity|0004070||IEA,amino acid binding|0016597||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088307.1;locus_tag=LPH40_RS01010;product=aspartate carbamoyltransferase catalytic subunit;protein_id=WP_038271179.1;transl_table=11 NZ_CP087685.1 RefSeq gene 215665 216132 . - . ID=gene-LPH40_RS01015;Name=ruvX;gbkey=Gene;gene=ruvX;gene_biotype=protein_coding;locus_tag=LPH40_RS01015;old_locus_tag=LPH40_01015 NZ_CP087685.1 Protein Homology CDS 215665 216132 . - 0 ID=cds-WP_038271178.1;Parent=gene-LPH40_RS01015;Dbxref=Genbank:WP_038271178.1;Name=WP_038271178.1;Ontology_term=GO:0008150,GO:0003674,GO:0005737;gbkey=CDS;gene=ruvX;go_component=cytoplasm|0005737||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302529.1;locus_tag=LPH40_RS01015;product=Holliday junction resolvase RuvX;protein_id=WP_038271178.1;transl_table=11 NZ_CP087685.1 RefSeq gene 216125 216691 . - . ID=gene-LPH40_RS01020;Name=LPH40_RS01020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01020;old_locus_tag=LPH40_01020 NZ_CP087685.1 Protein Homology CDS 216125 216691 . - 0 ID=cds-WP_038271177.1;Parent=gene-LPH40_RS01020;Dbxref=Genbank:WP_038271177.1;Name=WP_038271177.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851314.1;locus_tag=LPH40_RS01020;product=YqgE/AlgH family protein;protein_id=WP_038271177.1;transl_table=11 NZ_CP087685.1 RefSeq gene 217187 218371 . - . ID=gene-LPH40_RS01025;Name=LPH40_RS01025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01025;old_locus_tag=LPH40_01025 NZ_CP087685.1 Protein Homology CDS 217187 218371 . - 0 ID=cds-WP_038271175.1;Parent=gene-LPH40_RS01025;Dbxref=Genbank:WP_038271175.1;Name=WP_038271175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115444.1;locus_tag=LPH40_RS01025;product=D-alanyl-D-alanine carboxypeptidase family protein;protein_id=WP_038271175.1;transl_table=11 NZ_CP087685.1 RefSeq gene 219425 221677 . - . ID=gene-LPH40_RS01030;Name=katG;gbkey=Gene;gene=katG;gene_biotype=protein_coding;locus_tag=LPH40_RS01030;old_locus_tag=LPH40_01030 NZ_CP087685.1 Protein Homology CDS 219425 221677 . - 0 ID=cds-WP_114867156.1;Parent=gene-LPH40_RS01030;Dbxref=Genbank:WP_114867156.1;Name=WP_114867156.1;Ontology_term=GO:0006979,GO:0004096,GO:0004601;gbkey=CDS;gene=katG;go_function=catalase activity|0004096||IEA,peroxidase activity|0004601||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851311.1;locus_tag=LPH40_RS01030;product=catalase/peroxidase HPI;protein_id=WP_114867156.1;transl_table=11 NZ_CP087685.1 RefSeq gene 222149 223027 . - . ID=gene-LPH40_RS01035;Name=LPH40_RS01035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01035;old_locus_tag=LPH40_01035 NZ_CP087685.1 Protein Homology CDS 222149 223027 . - 0 ID=cds-WP_038271173.1;Parent=gene-LPH40_RS01035;Dbxref=Genbank:WP_038271173.1;Name=WP_038271173.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446026.1;locus_tag=LPH40_RS01035;product=J domain-containing protein;protein_id=WP_038271173.1;transl_table=11 NZ_CP087685.1 RefSeq gene 223179 223652 . - . ID=gene-LPH40_RS01040;Name=LPH40_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01040;old_locus_tag=LPH40_01040 NZ_CP087685.1 Protein Homology CDS 223179 223652 . - 0 ID=cds-WP_038271172.1;Parent=gene-LPH40_RS01040;Dbxref=Genbank:WP_038271172.1;Name=WP_038271172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894682.1;locus_tag=LPH40_RS01040;product=Hsp20/alpha crystallin family protein;protein_id=WP_038271172.1;transl_table=11 NZ_CP087685.1 RefSeq gene 224308 226692 . - . ID=gene-LPH40_RS01045;Name=pbpC;gbkey=Gene;gene=pbpC;gene_biotype=protein_coding;locus_tag=LPH40_RS01045;old_locus_tag=LPH40_01045 NZ_CP087685.1 Protein Homology CDS 224308 226692 . - 0 ID=cds-WP_038271170.1;Parent=gene-LPH40_RS01045;Dbxref=Genbank:WP_038271170.1;Name=WP_038271170.1;Ontology_term=GO:0009252,GO:0003824,GO:0009274;gbkey=CDS;gene=pbpC;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=catalytic activity|0003824||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083423.1;locus_tag=LPH40_RS01045;product=penicillin-binding protein 1C;protein_id=WP_038271170.1;transl_table=11 NZ_CP087685.1 RefSeq gene 226886 227008 . - . ID=gene-LPH40_RS11925;Name=LPH40_RS11925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11925 NZ_CP087685.1 GeneMarkS-2+ CDS 226886 227008 . - 0 ID=cds-WP_267903153.1;Parent=gene-LPH40_RS11925;Dbxref=Genbank:WP_267903153.1;Name=WP_267903153.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11925;product=hypothetical protein;protein_id=WP_267903153.1;transl_table=11 NZ_CP087685.1 RefSeq gene 228627 231509 . + . ID=gene-LPH40_RS01050;Name=LPH40_RS01050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01050;old_locus_tag=LPH40_01050 NZ_CP087685.1 Protein Homology CDS 228627 231509 . + 0 ID=cds-WP_038271168.1;Parent=gene-LPH40_RS01050;Dbxref=Genbank:WP_038271168.1;Name=WP_038271168.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083424.1;locus_tag=LPH40_RS01050;product=TonB-dependent receptor;protein_id=WP_038271168.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 231615 232152 . - . ID=gene-LPH40_RS01055;Name=LPH40_RS01055;end_range=232152,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS01055;old_locus_tag=LPH40_01055;partial=true;pseudo=true;start_range=.,231615 NZ_CP087685.1 Protein Homology CDS 231615 232152 . - 0 ID=cds-LPH40_RS01055;Parent=gene-LPH40_RS01055;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006631,GO:0016491,GO:0016616;end_range=232152,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931134.1;locus_tag=LPH40_RS01055;partial=true;product=3-hydroxyacyl-CoA dehydrogenase family protein;pseudo=true;start_range=.,231615;transl_table=11 NZ_CP087685.1 RefSeq gene 232741 232971 . - . ID=gene-LPH40_RS01060;Name=LPH40_RS01060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01060;old_locus_tag=LPH40_01060 NZ_CP087685.1 GeneMarkS-2+ CDS 232741 232971 . - 0 ID=cds-WP_051482308.1;Parent=gene-LPH40_RS01060;Dbxref=Genbank:WP_051482308.1;Name=WP_051482308.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01060;product=hypothetical protein;protein_id=WP_051482308.1;transl_table=11 NZ_CP087685.1 RefSeq gene 232968 233135 . - . ID=gene-LPH40_RS01065;Name=LPH40_RS01065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01065;old_locus_tag=LPH40_01065 NZ_CP087685.1 GeneMarkS-2+ CDS 232968 233135 . - 0 ID=cds-WP_160165168.1;Parent=gene-LPH40_RS01065;Dbxref=Genbank:WP_160165168.1;Name=WP_160165168.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01065;product=hypothetical protein;protein_id=WP_160165168.1;transl_table=11 NZ_CP087685.1 RefSeq gene 233312 233932 . + . ID=gene-LPH40_RS01070;Name=rpoE;gbkey=Gene;gene=rpoE;gene_biotype=protein_coding;locus_tag=LPH40_RS01070;old_locus_tag=LPH40_01070 NZ_CP087685.1 Protein Homology CDS 233312 233932 . + 0 ID=cds-WP_038271167.1;Parent=gene-LPH40_RS01070;Dbxref=Genbank:WP_038271167.1;Name=WP_038271167.1;Ontology_term=GO:0006352,GO:0006979,GO:0016987,GO:0005737;gbkey=CDS;gene=rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962205.1;locus_tag=LPH40_RS01070;product=RNA polymerase sigma factor RpoE;protein_id=WP_038271167.1;transl_table=11 NZ_CP087685.1 RefSeq gene 233929 234669 . + . ID=gene-LPH40_RS01075;Name=LPH40_RS01075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01075;old_locus_tag=LPH40_01075 NZ_CP087685.1 Protein Homology CDS 233929 234669 . + 0 ID=cds-WP_038271166.1;Parent=gene-LPH40_RS01075;Dbxref=Genbank:WP_038271166.1;Name=WP_038271166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083426.1;locus_tag=LPH40_RS01075;product=sigma-E factor negative regulatory protein;protein_id=WP_038271166.1;transl_table=11 NZ_CP087685.1 RefSeq gene 234777 236321 . + . ID=gene-LPH40_RS01080;Name=LPH40_RS01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01080;old_locus_tag=LPH40_01080 NZ_CP087685.1 Protein Homology CDS 234777 236321 . + 0 ID=cds-WP_038271165.1;Parent=gene-LPH40_RS01080;Dbxref=Genbank:WP_038271165.1;Name=WP_038271165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160027.1;locus_tag=LPH40_RS01080;product=DegQ family serine endoprotease;protein_id=WP_038271165.1;transl_table=11 NZ_CP087685.1 RefSeq gene 236502 238310 . + . ID=gene-LPH40_RS01085;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=LPH40_RS01085;old_locus_tag=LPH40_01085 NZ_CP087685.1 Protein Homology CDS 236502 238310 . + 0 ID=cds-WP_114867221.1;Parent=gene-LPH40_RS01085;Dbxref=Genbank:WP_114867221.1;Name=WP_114867221.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=lepA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083428.1;locus_tag=LPH40_RS01085;product=translation elongation factor 4;protein_id=WP_114867221.1;transl_table=11 NZ_CP087685.1 RefSeq gene 238413 239207 . + . ID=gene-LPH40_RS01090;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=LPH40_RS01090;old_locus_tag=LPH40_01090 NZ_CP087685.1 Protein Homology CDS 238413 239207 . + 0 ID=cds-WP_038271164.1;Parent=gene-LPH40_RS01090;Dbxref=Genbank:WP_038271164.1;Name=WP_038271164.1;Ontology_term=GO:0006465,GO:0009306,GO:0004252;gbkey=CDS;gene=lepB;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852731.1;locus_tag=LPH40_RS01090;product=signal peptidase I;protein_id=WP_038271164.1;transl_table=11 NZ_CP087685.1 RefSeq gene 239418 239603 . + . ID=gene-LPH40_RS01095;Name=LPH40_RS01095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01095;old_locus_tag=LPH40_01095 NZ_CP087685.1 Protein Homology CDS 239418 239603 . + 0 ID=cds-WP_230428223.1;Parent=gene-LPH40_RS01095;Dbxref=Genbank:WP_230428223.1;Name=WP_230428223.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027463.2;locus_tag=LPH40_RS01095;product=DUF4845 domain-containing protein;protein_id=WP_230428223.1;transl_table=11 NZ_CP087685.1 RefSeq gene 239590 240273 . + . ID=gene-LPH40_RS01100;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=LPH40_RS01100;old_locus_tag=LPH40_01100 NZ_CP087685.1 Protein Homology CDS 239590 240273 . + 0 ID=cds-WP_038271163.1;Parent=gene-LPH40_RS01100;Dbxref=Genbank:WP_038271163.1;Name=WP_038271163.1;Ontology_term=GO:0006396,GO:0004525;gbkey=CDS;gene=rnc;go_function=ribonuclease III activity|0004525||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083431.1;locus_tag=LPH40_RS01100;product=ribonuclease III;protein_id=WP_038271163.1;transl_table=11 NZ_CP087685.1 RefSeq gene 240270 241166 . + . ID=gene-LPH40_RS01105;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=LPH40_RS01105;old_locus_tag=LPH40_01105 NZ_CP087685.1 Protein Homology CDS 240270 241166 . + 0 ID=cds-WP_038271162.1;Parent=gene-LPH40_RS01105;Dbxref=Genbank:WP_038271162.1;Name=WP_038271162.1;Ontology_term=GO:0003723,GO:0005525;gbkey=CDS;gene=era;go_function=RNA binding|0003723||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098038.1;locus_tag=LPH40_RS01105;product=GTPase Era;protein_id=WP_038271162.1;transl_table=11 NZ_CP087685.1 RefSeq gene 241386 242132 . + . ID=gene-LPH40_RS01110;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=LPH40_RS01110;old_locus_tag=LPH40_01110 NZ_CP087685.1 Protein Homology CDS 241386 242132 . + 0 ID=cds-WP_051482307.1;Parent=gene-LPH40_RS01110;Dbxref=Genbank:WP_051482307.1;Name=WP_051482307.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677;gbkey=CDS;gene=recO;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300430.1;locus_tag=LPH40_RS01110;product=DNA repair protein RecO;protein_id=WP_051482307.1;transl_table=11 NZ_CP087685.1 RefSeq gene 242241 244148 . - . ID=gene-LPH40_RS01115;Name=dxs;gbkey=Gene;gene=dxs;gene_biotype=protein_coding;locus_tag=LPH40_RS01115;old_locus_tag=LPH40_01115 NZ_CP087685.1 Protein Homology CDS 242241 244148 . - 0 ID=cds-WP_038271161.1;Parent=gene-LPH40_RS01115;Dbxref=Genbank:WP_038271161.1;Name=WP_038271161.1;Ontology_term=GO:0008615,GO:0009228,GO:0009240,GO:0008661,GO:0005737;gbkey=CDS;gene=dxs;go_component=cytoplasm|0005737||IEA;go_function=1-deoxy-D-xylulose-5-phosphate synthase activity|0008661||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA,thiamine biosynthetic process|0009228||IEA,isopentenyl diphosphate biosynthetic process|0009240||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088288.1;locus_tag=LPH40_RS01115;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=WP_038271161.1;transl_table=11 NZ_CP087685.1 RefSeq gene 245039 245206 . + . ID=gene-LPH40_RS01120;Name=LPH40_RS01120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01120;old_locus_tag=LPH40_01120 NZ_CP087685.1 GeneMarkS-2+ CDS 245039 245206 . + 0 ID=cds-WP_160165167.1;Parent=gene-LPH40_RS01120;Dbxref=Genbank:WP_160165167.1;Name=WP_160165167.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01120;product=hypothetical protein;protein_id=WP_160165167.1;transl_table=11 NZ_CP087685.1 RefSeq gene 245510 247249 . - . ID=gene-LPH40_RS01125;Name=LPH40_RS01125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01125;old_locus_tag=LPH40_01125 NZ_CP087685.1 Protein Homology CDS 245510 247249 . - 0 ID=cds-WP_038271160.1;Parent=gene-LPH40_RS01125;Dbxref=Genbank:WP_038271160.1;Name=WP_038271160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894699.1;locus_tag=LPH40_RS01125;product=cation acetate symporter;protein_id=WP_038271160.1;transl_table=11 NZ_CP087685.1 RefSeq gene 247246 247563 . - . ID=gene-LPH40_RS01130;Name=LPH40_RS01130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01130;old_locus_tag=LPH40_01130 NZ_CP087685.1 Protein Homology CDS 247246 247563 . - 0 ID=cds-WP_038271159.1;Parent=gene-LPH40_RS01130;Dbxref=Genbank:WP_038271159.1;Name=WP_038271159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451668.1;locus_tag=LPH40_RS01130;product=DUF485 domain-containing protein;protein_id=WP_038271159.1;transl_table=11 NZ_CP087685.1 RefSeq gene 248341 250284 . + . ID=gene-LPH40_RS01135;Name=acs;gbkey=Gene;gene=acs;gene_biotype=protein_coding;locus_tag=LPH40_RS01135;old_locus_tag=LPH40_01135 NZ_CP087685.1 Protein Homology CDS 248341 250284 . + 0 ID=cds-WP_038271158.1;Parent=gene-LPH40_RS01135;Dbxref=Genbank:WP_038271158.1;Name=WP_038271158.1;Ontology_term=GO:0019427,GO:0003987;gbkey=CDS;gene=acs;go_function=acetate-CoA ligase activity|0003987||IEA;go_process=acetyl-CoA biosynthetic process from acetate|0019427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852028.1;locus_tag=LPH40_RS01135;product=acetate--CoA ligase;protein_id=WP_038271158.1;transl_table=11 NZ_CP087685.1 RefSeq gene 251289 251873 . + . ID=gene-LPH40_RS01140;Name=LPH40_RS01140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01140;old_locus_tag=LPH40_01140 NZ_CP087685.1 Protein Homology CDS 251289 251873 . + 0 ID=cds-WP_038271157.1;Parent=gene-LPH40_RS01140;Dbxref=Genbank:WP_038271157.1;Name=WP_038271157.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019337938.1;locus_tag=LPH40_RS01140;product=manganese efflux pump MntP family protein;protein_id=WP_038271157.1;transl_table=11 NZ_CP087685.1 RefSeq gene 253240 254109 . - . ID=gene-LPH40_RS01145;Name=LPH40_RS01145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01145;old_locus_tag=LPH40_01145 NZ_CP087685.1 Protein Homology CDS 253240 254109 . - 0 ID=cds-WP_038271155.1;Parent=gene-LPH40_RS01145;Dbxref=Genbank:WP_038271155.1;Name=WP_038271155.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024950.2;locus_tag=LPH40_RS01145;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_038271155.1;transl_table=11 NZ_CP087685.1 RefSeq gene 254112 254462 . - . ID=gene-LPH40_RS01150;Name=LPH40_RS01150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01150;old_locus_tag=LPH40_01150 NZ_CP087685.1 GeneMarkS-2+ CDS 254112 254462 . - 0 ID=cds-WP_152536610.1;Parent=gene-LPH40_RS01150;Dbxref=Genbank:WP_152536610.1;Name=WP_152536610.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01150;product=hypothetical protein;protein_id=WP_152536610.1;transl_table=11 NZ_CP087685.1 RefSeq gene 255027 255488 . + . ID=gene-LPH40_RS01155;Name=LPH40_RS01155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01155;old_locus_tag=LPH40_01155 NZ_CP087685.1 Protein Homology CDS 255027 255488 . + 0 ID=cds-WP_201745846.1;Parent=gene-LPH40_RS01155;Dbxref=Genbank:WP_201745846.1;Name=WP_201745846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382662.1;locus_tag=LPH40_RS01155;product=hypothetical protein;protein_id=WP_201745846.1;transl_table=11 NZ_CP087685.1 RefSeq gene 256552 258468 . + . ID=gene-LPH40_RS01160;Name=LPH40_RS01160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01160;old_locus_tag=LPH40_01160 NZ_CP087685.1 Protein Homology CDS 256552 258468 . + 0 ID=cds-WP_081755433.1;Parent=gene-LPH40_RS01160;Dbxref=Genbank:WP_081755433.1;Name=WP_081755433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382663.1;locus_tag=LPH40_RS01160;product=PQQ-binding-like beta-propeller repeat protein;protein_id=WP_081755433.1;transl_table=11 NZ_CP087685.1 RefSeq gene 258958 261024 . - . ID=gene-LPH40_RS01165;Name=LPH40_RS01165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01165;old_locus_tag=LPH40_01165 NZ_CP087685.1 Protein Homology CDS 258958 261024 . - 0 ID=cds-WP_038271153.1;Parent=gene-LPH40_RS01165;Dbxref=Genbank:WP_038271153.1;Name=WP_038271153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169463.1;locus_tag=LPH40_RS01165;product=S9 family peptidase;protein_id=WP_038271153.1;transl_table=11 NZ_CP087685.1 RefSeq gene 261451 263421 . - . ID=gene-LPH40_RS01170;Name=LPH40_RS01170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01170;old_locus_tag=LPH40_01170 NZ_CP087685.1 Protein Homology CDS 261451 263421 . - 0 ID=cds-WP_038271152.1;Parent=gene-LPH40_RS01170;Dbxref=Genbank:WP_038271152.1;Name=WP_038271152.1;Ontology_term=GO:0006857,GO:0035673,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=oligopeptide transmembrane transporter activity|0035673||IEA;go_process=oligopeptide transport|0006857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346708.1;locus_tag=LPH40_RS01170;product=oligopeptide transporter%2C OPT family;protein_id=WP_038271152.1;transl_table=11 NZ_CP087685.1 RefSeq gene 263458 263589 . - . ID=gene-LPH40_RS11930;Name=LPH40_RS11930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11930 NZ_CP087685.1 GeneMarkS-2+ CDS 263458 263589 . - 0 ID=cds-WP_267903154.1;Parent=gene-LPH40_RS11930;Dbxref=Genbank:WP_267903154.1;Name=WP_267903154.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11930;product=hypothetical protein;protein_id=WP_267903154.1;transl_table=11 NZ_CP087685.1 RefSeq gene 265226 266749 . + . ID=gene-LPH40_RS01175;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;locus_tag=LPH40_RS01175;old_locus_tag=LPH40_01175 NZ_CP087685.1 Protein Homology CDS 265226 266749 . + 0 ID=cds-WP_038271151.1;Parent=gene-LPH40_RS01175;Dbxref=Genbank:WP_038271151.1;Name=WP_038271151.1;Ontology_term=GO:0006072,GO:0004368,GO:0009331;gbkey=CDS;gene=glpD;go_component=glycerol-3-phosphate dehydrogenase complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894714.1;locus_tag=LPH40_RS01175;product=glycerol-3-phosphate dehydrogenase;protein_id=WP_038271151.1;transl_table=11 NZ_CP087685.1 RefSeq gene 266837 267664 . + . ID=gene-LPH40_RS01180;Name=LPH40_RS01180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01180;old_locus_tag=LPH40_01180 NZ_CP087685.1 Protein Homology CDS 266837 267664 . + 0 ID=cds-WP_038271150.1;Parent=gene-LPH40_RS01180;Dbxref=Genbank:WP_038271150.1;Name=WP_038271150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083443.1;locus_tag=LPH40_RS01180;product=aquaporin family protein;protein_id=WP_038271150.1;transl_table=11 NZ_CP087685.1 RefSeq gene 267719 269218 . + . ID=gene-LPH40_RS01185;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=LPH40_RS01185;old_locus_tag=LPH40_01185 NZ_CP087685.1 Protein Homology CDS 267719 269218 . + 0 ID=cds-WP_038271149.1;Parent=gene-LPH40_RS01185;Dbxref=Genbank:WP_038271149.1;Name=WP_038271149.1;Ontology_term=GO:0006071,GO:0004370;gbkey=CDS;gene=glpK;go_function=glycerol kinase activity|0004370||IEA;go_process=glycerol metabolic process|0006071||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368988.1;locus_tag=LPH40_RS01185;product=glycerol kinase GlpK;protein_id=WP_038271149.1;transl_table=11 NZ_CP087685.1 RefSeq gene 270052 270819 . - . ID=gene-LPH40_RS01190;Name=LPH40_RS01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01190;old_locus_tag=LPH40_01190 NZ_CP087685.1 Protein Homology CDS 270052 270819 . - 0 ID=cds-WP_038271148.1;Parent=gene-LPH40_RS01190;Dbxref=Genbank:WP_038271148.1;Name=WP_038271148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903483.1;locus_tag=LPH40_RS01190;product=coniferyl-alcohol dehydrogenase;protein_id=WP_038271148.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 271146 272036 . + . ID=gene-LPH40_RS01195;Name=LPH40_RS01195;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS01195;old_locus_tag=LPH40_01195;partial=true;pseudo=true;start_range=.,271146 NZ_CP087685.1 Protein Homology CDS 271146 272036 . + 0 ID=cds-LPH40_RS01195;Parent=gene-LPH40_RS01195;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574667.1;locus_tag=LPH40_RS01195;partial=true;product=D-hexose-6-phosphate mutarotase;pseudo=true;start_range=.,271146;transl_table=11 NZ_CP087685.1 RefSeq gene 272669 274945 . + . ID=gene-LPH40_RS01200;Name=metE;gbkey=Gene;gene=metE;gene_biotype=protein_coding;locus_tag=LPH40_RS01200;old_locus_tag=LPH40_01200 NZ_CP087685.1 Protein Homology CDS 272669 274945 . + 0 ID=cds-WP_038271147.1;Parent=gene-LPH40_RS01200;Dbxref=Genbank:WP_038271147.1;Name=WP_038271147.1;Ontology_term=GO:0008652,GO:0009086,GO:0003871,GO:0008270;gbkey=CDS;gene=metE;go_function=5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|0003871||IEA,zinc ion binding|0008270||IEA;go_process=amino acid biosynthetic process|0008652||IEA,methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894720.1;locus_tag=LPH40_RS01200;product=5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase;protein_id=WP_038271147.1;transl_table=11 NZ_CP087685.1 RefSeq gene 275010 275720 . + . ID=gene-LPH40_RS01205;Name=LPH40_RS01205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01205;old_locus_tag=LPH40_01205 NZ_CP087685.1 Protein Homology CDS 275010 275720 . + 0 ID=cds-WP_051482305.1;Parent=gene-LPH40_RS01205;Dbxref=Genbank:WP_051482305.1;Name=WP_051482305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017356868.1;locus_tag=LPH40_RS01205;product=epoxyqueuosine reductase QueH;protein_id=WP_051482305.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 275742 275958 . + . ID=gene-LPH40_RS01210;Name=LPH40_RS01210;end_range=275958,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS01210;old_locus_tag=LPH40_01210;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 275742 275958 . + 0 ID=cds-LPH40_RS01210;Parent=gene-LPH40_RS01210;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=275958,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083449.1;locus_tag=LPH40_RS01210;partial=true;product=isochorismatase family protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 275955 277601 . - . ID=gene-LPH40_RS01215;Name=LPH40_RS01215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01215;old_locus_tag=LPH40_01215 NZ_CP087685.1 Protein Homology CDS 275955 277601 . - 0 ID=cds-WP_038271146.1;Parent=gene-LPH40_RS01215;Dbxref=Genbank:WP_038271146.1;Name=WP_038271146.1;Ontology_term=GO:0006631,GO:0031956;gbkey=CDS;go_function=medium-chain fatty acid-CoA ligase activity|0031956||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852012.1;locus_tag=LPH40_RS01215;product=fatty acid CoA ligase family protein;protein_id=WP_038271146.1;transl_table=11 NZ_CP087685.1 RefSeq gene 278577 278900 . - . ID=gene-LPH40_RS01220;Name=LPH40_RS01220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01220;old_locus_tag=LPH40_01220 NZ_CP087685.1 Protein Homology CDS 278577 278900 . - 0 ID=cds-WP_171898085.1;Parent=gene-LPH40_RS01220;Dbxref=Genbank:WP_171898085.1;Name=WP_171898085.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156759.1;locus_tag=LPH40_RS01220;product=lipid-A-disaccharide synthase N-terminal domain-containing protein;protein_id=WP_171898085.1;transl_table=11 NZ_CP087685.1 RefSeq gene 278902 279624 . - . ID=gene-LPH40_RS01225;Name=LPH40_RS01225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01225;old_locus_tag=LPH40_01225 NZ_CP087685.1 Protein Homology CDS 278902 279624 . - 0 ID=cds-WP_038271143.1;Parent=gene-LPH40_RS01225;Dbxref=Genbank:WP_038271143.1;Name=WP_038271143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088269.1;locus_tag=LPH40_RS01225;product=glycosyltransferase;protein_id=WP_038271143.1;transl_table=11 NZ_CP087685.1 RefSeq gene 279705 280670 . - . ID=gene-LPH40_RS01230;Name=LPH40_RS01230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01230;old_locus_tag=LPH40_01230 NZ_CP087685.1 Protein Homology CDS 279705 280670 . - 0 ID=cds-WP_038271142.1;Parent=gene-LPH40_RS01230;Dbxref=Genbank:WP_038271142.1;Name=WP_038271142.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115470.1;locus_tag=LPH40_RS01230;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_038271142.1;transl_table=11 NZ_CP087685.1 RefSeq gene 281043 281975 . - . ID=gene-LPH40_RS01235;Name=LPH40_RS01235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01235;old_locus_tag=LPH40_01235 NZ_CP087685.1 Protein Homology CDS 281043 281975 . - 0 ID=cds-WP_038271141.1;Parent=gene-LPH40_RS01235;Dbxref=Genbank:WP_038271141.1;Name=WP_038271141.1;Ontology_term=GO:0000910,GO:0007059,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cytokinesis|0000910||IEA,chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088267.1;locus_tag=LPH40_RS01235;product=ParB/RepB/Spo0J family partition protein;protein_id=WP_038271141.1;transl_table=11 NZ_CP087685.1 RefSeq gene 281975 282769 . - . ID=gene-LPH40_RS01240;Name=LPH40_RS01240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01240;old_locus_tag=LPH40_01240 NZ_CP087685.1 Protein Homology CDS 281975 282769 . - 0 ID=cds-WP_038271140.1;Parent=gene-LPH40_RS01240;Dbxref=Genbank:WP_038271140.1;Name=WP_038271140.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088266.1;locus_tag=LPH40_RS01240;product=ParA family protein;protein_id=WP_038271140.1;transl_table=11 NZ_CP087685.1 RefSeq gene 283278 283520 . - . ID=gene-LPH40_RS01245;Name=LPH40_RS01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01245;old_locus_tag=LPH40_01245 NZ_CP087685.1 GeneMarkS-2+ CDS 283278 283520 . - 0 ID=cds-WP_152536608.1;Parent=gene-LPH40_RS01245;Dbxref=Genbank:WP_152536608.1;Name=WP_152536608.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01245;product=hypothetical protein;protein_id=WP_152536608.1;transl_table=11 NZ_CP087685.1 RefSeq gene 284601 285563 . - . ID=gene-LPH40_RS01250;Name=LPH40_RS01250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01250;old_locus_tag=LPH40_01250 NZ_CP087685.1 Protein Homology CDS 284601 285563 . - 0 ID=cds-WP_038271138.1;Parent=gene-LPH40_RS01250;Dbxref=Genbank:WP_038271138.1;Name=WP_038271138.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083456.1;locus_tag=LPH40_RS01250;product=MBL fold metallo-hydrolase;protein_id=WP_038271138.1;transl_table=11 NZ_CP087685.1 RefSeq gene 286602 287882 . - . ID=gene-LPH40_RS01255;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=LPH40_RS01255;old_locus_tag=LPH40_01255 NZ_CP087685.1 Protein Homology CDS 286602 287882 . - 0 ID=cds-WP_038271137.1;Parent=gene-LPH40_RS01255;Dbxref=Genbank:WP_038271137.1;Name=WP_038271137.1;Ontology_term=GO:0006434,GO:0004828,GO:0005737;gbkey=CDS;gene=serS;go_component=cytoplasm|0005737||IEA;go_function=serine-tRNA ligase activity|0004828||IEA;go_process=seryl-tRNA aminoacylation|0006434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083457.1;locus_tag=LPH40_RS01255;product=serine--tRNA ligase;protein_id=WP_038271137.1;transl_table=11 NZ_CP087685.1 RefSeq gene 288002 288697 . + . ID=gene-LPH40_RS01260;Name=LPH40_RS01260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01260;old_locus_tag=LPH40_01260 NZ_CP087685.1 Protein Homology CDS 288002 288697 . + 0 ID=cds-WP_038271136.1;Parent=gene-LPH40_RS01260;Dbxref=Genbank:WP_038271136.1;Name=WP_038271136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852004.1;locus_tag=LPH40_RS01260;product=energy transducer TonB;protein_id=WP_038271136.1;transl_table=11 NZ_CP087685.1 RefSeq gene 289475 290824 . - . ID=gene-LPH40_RS01265;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=LPH40_RS01265;old_locus_tag=LPH40_01265 NZ_CP087685.1 Protein Homology CDS 289475 290824 . - 0 ID=cds-WP_038271135.1;Parent=gene-LPH40_RS01265;Dbxref=Genbank:WP_038271135.1;Name=WP_038271135.1;Ontology_term=GO:0009423,GO:0003866;gbkey=CDS;gene=aroA;go_function=3-phosphoshikimate 1-carboxyvinyltransferase activity|0003866||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091079.1;locus_tag=LPH40_RS01265;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_038271135.1;transl_table=11 NZ_CP087685.1 RefSeq gene 290913 292007 . - . ID=gene-LPH40_RS01270;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;locus_tag=LPH40_RS01270;old_locus_tag=LPH40_01270 NZ_CP087685.1 Protein Homology CDS 290913 292007 . - 0 ID=cds-WP_038271212.1;Parent=gene-LPH40_RS01270;Dbxref=Genbank:WP_038271212.1;Name=WP_038271212.1;Ontology_term=GO:0009094,GO:0004664;gbkey=CDS;gene=pheA;go_function=prephenate dehydratase activity|0004664||IEA;go_process=L-phenylalanine biosynthetic process|0009094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451090.1;locus_tag=LPH40_RS01270;product=prephenate dehydratase;protein_id=WP_038271212.1;transl_table=11 NZ_CP087685.1 RefSeq gene 292118 293203 . - . ID=gene-LPH40_RS01275;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=LPH40_RS01275;old_locus_tag=LPH40_01275 NZ_CP087685.1 Protein Homology CDS 292118 293203 . - 0 ID=cds-WP_038271211.1;Parent=gene-LPH40_RS01275;Dbxref=Genbank:WP_038271211.1;Name=WP_038271211.1;Ontology_term=GO:0006564,GO:0004648;gbkey=CDS;gene=serC;go_function=O-phospho-L-serine:2-oxoglutarate aminotransferase activity|0004648||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300927.1;locus_tag=LPH40_RS01275;product=phosphoserine transaminase;protein_id=WP_038271211.1;transl_table=11 NZ_CP087685.1 RefSeq gene 293877 294944 . + . ID=gene-LPH40_RS01280;Name=LPH40_RS01280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01280;old_locus_tag=LPH40_01280 NZ_CP087685.1 Protein Homology CDS 293877 294944 . + 0 ID=cds-WP_051482304.1;Parent=gene-LPH40_RS01280;Dbxref=Genbank:WP_051482304.1;Name=WP_051482304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085874.1;locus_tag=LPH40_RS01280;product=energy transducer TonB;protein_id=WP_051482304.1;transl_table=11 NZ_CP087685.1 RefSeq gene 295043 296227 . - . ID=gene-LPH40_RS01285;Name=LPH40_RS01285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01285;old_locus_tag=LPH40_01285 NZ_CP087685.1 Protein Homology CDS 295043 296227 . - 0 ID=cds-WP_038271134.1;Parent=gene-LPH40_RS01285;Dbxref=Genbank:WP_038271134.1;Name=WP_038271134.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085873.1;locus_tag=LPH40_RS01285;product=ABC transporter permease;protein_id=WP_038271134.1;transl_table=11 NZ_CP087685.1 RefSeq gene 296224 296970 . - . ID=gene-LPH40_RS01290;Name=LPH40_RS01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01290;old_locus_tag=LPH40_01290 NZ_CP087685.1 Protein Homology CDS 296224 296970 . - 0 ID=cds-WP_038271133.1;Parent=gene-LPH40_RS01290;Dbxref=Genbank:WP_038271133.1;Name=WP_038271133.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039041.1;locus_tag=LPH40_RS01290;product=ATP-binding cassette domain-containing protein;protein_id=WP_038271133.1;transl_table=11 NZ_CP087685.1 RefSeq gene 296967 298502 . - . ID=gene-LPH40_RS01295;Name=LPH40_RS01295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01295;old_locus_tag=LPH40_01295 NZ_CP087685.1 Protein Homology CDS 296967 298502 . - 0 ID=cds-WP_038271132.1;Parent=gene-LPH40_RS01295;Dbxref=Genbank:WP_038271132.1;Name=WP_038271132.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091066.1;locus_tag=LPH40_RS01295;product=alpha/beta hydrolase;protein_id=WP_038271132.1;transl_table=11 NZ_CP087685.1 RefSeq gene 299589 300932 . + . ID=gene-LPH40_RS01300;Name=LPH40_RS01300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01300;old_locus_tag=LPH40_01300 NZ_CP087685.1 Protein Homology CDS 299589 300932 . + 0 ID=cds-WP_038271131.1;Parent=gene-LPH40_RS01300;Dbxref=Genbank:WP_038271131.1;Name=WP_038271131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097976.1;locus_tag=LPH40_RS01300;product=serine hydrolase domain-containing protein;protein_id=WP_038271131.1;transl_table=11 NZ_CP087685.1 RefSeq gene 301070 301360 . - . ID=gene-LPH40_RS01305;Name=LPH40_RS01305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01305;old_locus_tag=LPH40_01305 NZ_CP087685.1 GeneMarkS-2+ CDS 301070 301360 . - 0 ID=cds-WP_114867158.1;Parent=gene-LPH40_RS01305;Dbxref=Genbank:WP_114867158.1;Name=WP_114867158.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01305;product=hypothetical protein;protein_id=WP_114867158.1;transl_table=11 NZ_CP087685.1 RefSeq gene 301696 302580 . - . ID=gene-LPH40_RS01310;Name=LPH40_RS01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01310;old_locus_tag=LPH40_01310 NZ_CP087685.1 Protein Homology CDS 301696 302580 . - 0 ID=cds-WP_171898086.1;Parent=gene-LPH40_RS01310;Dbxref=Genbank:WP_171898086.1;Name=WP_171898086.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992724.1;locus_tag=LPH40_RS01310;product=hypothetical protein;protein_id=WP_171898086.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 302635 303715 . + . ID=gene-LPH40_RS01315;Name=LPH40_RS01315;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS01315;old_locus_tag=LPH40_01315;pseudo=true NZ_CP087685.1 Protein Homology CDS 302635 303715 . + 0 ID=cds-LPH40_RS01315;Parent=gene-LPH40_RS01315;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation%3B frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260437.1;locus_tag=LPH40_RS01315;product=acetyl-CoA C-acyltransferase;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 304909 305526 . + . ID=gene-LPH40_RS01320;Name=LPH40_RS01320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01320;old_locus_tag=LPH40_01320 NZ_CP087685.1 Protein Homology CDS 304909 305526 . + 0 ID=cds-WP_038272558.1;Parent=gene-LPH40_RS01320;Dbxref=Genbank:WP_038272558.1;Name=WP_038272558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368710.1;locus_tag=LPH40_RS01320;product=TetR/AcrR family transcriptional regulator;protein_id=WP_038272558.1;transl_table=11 NZ_CP087685.1 RefSeq gene 306915 307844 . + . ID=gene-LPH40_RS01325;Name=LPH40_RS01325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01325;old_locus_tag=LPH40_01325 NZ_CP087685.1 Protein Homology CDS 306915 307844 . + 0 ID=cds-WP_038272563.1;Parent=gene-LPH40_RS01325;Dbxref=Genbank:WP_038272563.1;Name=WP_038272563.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851692.1;locus_tag=LPH40_RS01325;product=metalloregulator ArsR/SmtB family transcription factor;protein_id=WP_038272563.1;transl_table=11 NZ_CP087685.1 RefSeq gene 308551 309753 . - . ID=gene-LPH40_RS01330;Name=LPH40_RS01330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01330;old_locus_tag=LPH40_01330 NZ_CP087685.1 Protein Homology CDS 308551 309753 . - 0 ID=cds-WP_038272553.1;Parent=gene-LPH40_RS01330;Dbxref=Genbank:WP_038272553.1;Name=WP_038272553.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051002.1;locus_tag=LPH40_RS01330;product=AGE family epimerase/isomerase;protein_id=WP_038272553.1;transl_table=11 NZ_CP087685.1 RefSeq gene 309750 310742 . - . ID=gene-LPH40_RS01335;Name=LPH40_RS01335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01335;old_locus_tag=LPH40_01335 NZ_CP087685.1 Protein Homology CDS 309750 310742 . - 0 ID=cds-WP_038272551.1;Parent=gene-LPH40_RS01335;Dbxref=Genbank:WP_038272551.1;Name=WP_038272551.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084974.1;locus_tag=LPH40_RS01335;product=carbohydrate kinase;protein_id=WP_038272551.1;transl_table=11 NZ_CP087685.1 RefSeq gene 310763 312043 . - . ID=gene-LPH40_RS01340;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=LPH40_RS01340;old_locus_tag=LPH40_01340 NZ_CP087685.1 Protein Homology CDS 310763 312043 . - 0 ID=cds-WP_038272549.1;Parent=gene-LPH40_RS01340;Dbxref=Genbank:WP_038272549.1;Name=WP_038272549.1;Ontology_term=GO:0015756,GO:0015535,GO:0005886;gbkey=CDS;gene=fucP;go_component=plasma membrane|0005886||IEA;go_function=fucose:proton symporter activity|0015535||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084976.1;locus_tag=LPH40_RS01340;product=L-fucose:H+ symporter permease;protein_id=WP_038272549.1;transl_table=11 NZ_CP087685.1 RefSeq gene 313846 314481 . - . ID=gene-LPH40_RS01345;Name=LPH40_RS01345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01345;old_locus_tag=LPH40_01345 NZ_CP087685.1 Protein Homology CDS 313846 314481 . - 0 ID=cds-WP_038272544.1;Parent=gene-LPH40_RS01345;Dbxref=Genbank:WP_038272544.1;Name=WP_038272544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087331.1;locus_tag=LPH40_RS01345;product=DUF2058 domain-containing protein;protein_id=WP_038272544.1;transl_table=11 NZ_CP087685.1 RefSeq gene 314519 314755 . - . ID=gene-LPH40_RS01350;Name=LPH40_RS01350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01350;old_locus_tag=LPH40_01350 NZ_CP087685.1 Protein Homology CDS 314519 314755 . - 0 ID=cds-WP_038272561.1;Parent=gene-LPH40_RS01350;Dbxref=Genbank:WP_038272561.1;Name=WP_038272561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087333.1;locus_tag=LPH40_RS01350;product=SlyX family protein;protein_id=WP_038272561.1;transl_table=11 NZ_CP087685.1 RefSeq gene 314748 316100 . - . ID=gene-LPH40_RS01355;Name=LPH40_RS01355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01355;old_locus_tag=LPH40_01355 NZ_CP087685.1 Protein Homology CDS 314748 316100 . - 0 ID=cds-WP_038272542.1;Parent=gene-LPH40_RS01355;Dbxref=Genbank:WP_038272542.1;Name=WP_038272542.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804407.1;locus_tag=LPH40_RS01355;product=UDP-glucose/GDP-mannose dehydrogenase family protein;protein_id=WP_038272542.1;transl_table=11 NZ_CP087685.1 RefSeq gene 316124 317080 . - . ID=gene-LPH40_RS01360;Name=LPH40_RS01360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01360;old_locus_tag=LPH40_01360 NZ_CP087685.1 Protein Homology CDS 316124 317080 . - 0 ID=cds-WP_038272539.1;Parent=gene-LPH40_RS01360;Dbxref=Genbank:WP_038272539.1;Name=WP_038272539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463036.1;locus_tag=LPH40_RS01360;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_038272539.1;transl_table=11 NZ_CP087685.1 RefSeq gene 317927 318499 . - . ID=gene-LPH40_RS01365;Name=LPH40_RS01365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01365;old_locus_tag=LPH40_01365 NZ_CP087685.1 Protein Homology CDS 317927 318499 . - 0 ID=cds-WP_038272538.1;Parent=gene-LPH40_RS01365;Dbxref=Genbank:WP_038272538.1;Name=WP_038272538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097981.1;locus_tag=LPH40_RS01365;product=glutathione peroxidase;protein_id=WP_038272538.1;transl_table=11 NZ_CP087685.1 RefSeq gene 319077 319253 . + . ID=gene-LPH40_RS01370;Name=LPH40_RS01370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01370;old_locus_tag=LPH40_01370 NZ_CP087685.1 GeneMarkS-2+ CDS 319077 319253 . + 0 ID=cds-WP_160165218.1;Parent=gene-LPH40_RS01370;Dbxref=Genbank:WP_160165218.1;Name=WP_160165218.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01370;product=hypothetical protein;protein_id=WP_160165218.1;transl_table=11 NZ_CP087685.1 RefSeq gene 319250 320125 . + . ID=gene-LPH40_RS01375;Name=LPH40_RS01375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01375;old_locus_tag=LPH40_01375 NZ_CP087685.1 Protein Homology CDS 319250 320125 . + 0 ID=cds-WP_038272536.1;Parent=gene-LPH40_RS01375;Dbxref=Genbank:WP_038272536.1;Name=WP_038272536.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913764.1;locus_tag=LPH40_RS01375;product=ABC transporter ATP-binding protein;protein_id=WP_038272536.1;transl_table=11 NZ_CP087685.1 RefSeq gene 320122 321090 . + . ID=gene-LPH40_RS01380;Name=LPH40_RS01380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01380;old_locus_tag=LPH40_01380 NZ_CP087685.1 Protein Homology CDS 320122 321090 . + 0 ID=cds-WP_038272533.1;Parent=gene-LPH40_RS01380;Dbxref=Genbank:WP_038272533.1;Name=WP_038272533.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894098.1;locus_tag=LPH40_RS01380;product=hypothetical protein;protein_id=WP_038272533.1;transl_table=11 NZ_CP087685.1 RefSeq gene 321278 321409 . - . ID=gene-LPH40_RS11935;Name=LPH40_RS11935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11935 NZ_CP087685.1 GeneMarkS-2+ CDS 321278 321409 . - 0 ID=cds-WP_267903155.1;Parent=gene-LPH40_RS11935;Dbxref=Genbank:WP_267903155.1;Name=WP_267903155.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11935;product=hypothetical protein;protein_id=WP_267903155.1;transl_table=11 NZ_CP087685.1 RefSeq gene 322191 322619 . + . ID=gene-LPH40_RS01385;Name=LPH40_RS01385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01385;old_locus_tag=LPH40_01385 NZ_CP087685.1 Protein Homology CDS 322191 322619 . + 0 ID=cds-WP_038272529.1;Parent=gene-LPH40_RS01385;Dbxref=Genbank:WP_038272529.1;Name=WP_038272529.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852919.1;locus_tag=LPH40_RS01385;product=hypothetical protein;protein_id=WP_038272529.1;transl_table=11 NZ_CP087685.1 RefSeq gene 322825 324231 . - . ID=gene-LPH40_RS01390;Name=LPH40_RS01390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01390;old_locus_tag=LPH40_01390 NZ_CP087685.1 Protein Homology CDS 322825 324231 . - 0 ID=cds-WP_038272527.1;Parent=gene-LPH40_RS01390;Dbxref=Genbank:WP_038272527.1;Name=WP_038272527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852308.1;locus_tag=LPH40_RS01390;product=class II fumarate hydratase;protein_id=WP_038272527.1;transl_table=11 NZ_CP087685.1 RefSeq gene 324706 326073 . + . ID=gene-LPH40_RS01395;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=LPH40_RS01395;old_locus_tag=LPH40_01395 NZ_CP087685.1 Protein Homology CDS 324706 326073 . + 0 ID=cds-WP_038272523.1;Parent=gene-LPH40_RS01395;Dbxref=Genbank:WP_038272523.1;Name=WP_038272523.1;Ontology_term=GO:0006188,GO:0009152,GO:0004018;gbkey=CDS;gene=purB;go_function=N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|0004018||IEA;go_process=IMP biosynthetic process|0006188||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156796.1;locus_tag=LPH40_RS01395;product=adenylosuccinate lyase;protein_id=WP_038272523.1;transl_table=11 NZ_CP087685.1 RefSeq gene 326627 327889 . + . ID=gene-LPH40_RS01400;Name=LPH40_RS01400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01400;old_locus_tag=LPH40_01400 NZ_CP087685.1 Protein Homology CDS 326627 327889 . + 0 ID=cds-WP_038272522.1;Parent=gene-LPH40_RS01400;Dbxref=Genbank:WP_038272522.1;Name=WP_038272522.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337786.1;locus_tag=LPH40_RS01400;product=cupin domain-containing protein;protein_id=WP_038272522.1;transl_table=11 NZ_CP087685.1 RefSeq gene 329525 332353 . + . ID=gene-LPH40_RS01405;Name=LPH40_RS01405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01405;old_locus_tag=LPH40_01405 NZ_CP087685.1 Protein Homology CDS 329525 332353 . + 0 ID=cds-WP_114867160.1;Parent=gene-LPH40_RS01405;Dbxref=Genbank:WP_114867160.1;Name=WP_114867160.1;Ontology_term=GO:0006099,GO:0004591,GO:0030976;gbkey=CDS;go_function=oxoglutarate dehydrogenase (succinyl-transferring) activity|0004591||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507330.1;locus_tag=LPH40_RS01405;product=2-oxoglutarate dehydrogenase E1 component;protein_id=WP_114867160.1;transl_table=11 NZ_CP087685.1 RefSeq gene 332394 333557 . + . ID=gene-LPH40_RS01410;Name=sucB;gbkey=Gene;gene=sucB;gene_biotype=protein_coding;locus_tag=LPH40_RS01410;old_locus_tag=LPH40_01410 NZ_CP087685.1 Protein Homology CDS 332394 333557 . + 0 ID=cds-WP_038272655.1;Parent=gene-LPH40_RS01410;Dbxref=Genbank:WP_038272655.1;Name=WP_038272655.1;Ontology_term=GO:0006099,GO:0006554,GO:0004149,GO:0045252;gbkey=CDS;gene=sucB;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=dihydrolipoyllysine-residue succinyltransferase activity|0004149||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,lysine catabolic process|0006554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572000.1;locus_tag=LPH40_RS01410;product=dihydrolipoyllysine-residue succinyltransferase;protein_id=WP_038272655.1;transl_table=11 NZ_CP087685.1 RefSeq gene 333991 335427 . + . ID=gene-LPH40_RS01415;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=LPH40_RS01415;old_locus_tag=LPH40_01415 NZ_CP087685.1 Protein Homology CDS 333991 335427 . + 0 ID=cds-WP_038272654.1;Parent=gene-LPH40_RS01415;Dbxref=Genbank:WP_038272654.1;Name=WP_038272654.1;Ontology_term=GO:0006096,GO:0045454,GO:0051068,GO:0004148;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase activity|0004148||IEA;go_process=glycolytic process|0006096||IEA,cell redox homeostasis|0045454||IEA,dihydrolipoamide metabolic process|0051068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159046.1;locus_tag=LPH40_RS01415;product=dihydrolipoyl dehydrogenase;protein_id=WP_038272654.1;transl_table=11 NZ_CP087685.1 RefSeq gene 337537 337998 . - . ID=gene-LPH40_RS01420;Name=LPH40_RS01420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01420;old_locus_tag=LPH40_01420 NZ_CP087685.1 Protein Homology CDS 337537 337998 . - 0 ID=cds-WP_038272652.1;Parent=gene-LPH40_RS01420;Dbxref=Genbank:WP_038272652.1;Name=WP_038272652.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303254.1;locus_tag=LPH40_RS01420;product=glycine zipper 2TM domain-containing protein;protein_id=WP_038272652.1;transl_table=11 NZ_CP087685.1 RefSeq gene 339345 340145 . + . ID=gene-LPH40_RS01425;Name=LPH40_RS01425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01425;old_locus_tag=LPH40_01425 NZ_CP087685.1 Protein Homology CDS 339345 340145 . + 0 ID=cds-WP_038272649.1;Parent=gene-LPH40_RS01425;Dbxref=Genbank:WP_038272649.1;Name=WP_038272649.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451918.1;locus_tag=LPH40_RS01425;product=tRNA threonylcarbamoyladenosine dehydratase;protein_id=WP_038272649.1;transl_table=11 NZ_CP087685.1 RefSeq gene 341256 341444 . - . ID=gene-LPH40_RS01430;Name=LPH40_RS01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01430;old_locus_tag=LPH40_01430 NZ_CP087685.1 GeneMarkS-2+ CDS 341256 341444 . - 0 ID=cds-WP_038272642.1;Parent=gene-LPH40_RS01430;Dbxref=Genbank:WP_038272642.1;Name=WP_038272642.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01430;product=hypothetical protein;protein_id=WP_038272642.1;transl_table=11 NZ_CP087685.1 RefSeq gene 341489 341665 . - . ID=gene-LPH40_RS01435;Name=LPH40_RS01435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01435;old_locus_tag=LPH40_01435 NZ_CP087685.1 Protein Homology CDS 341489 341665 . - 0 ID=cds-WP_230428225.1;Parent=gene-LPH40_RS01435;Dbxref=Genbank:WP_230428225.1;Name=WP_230428225.1;Ontology_term=GO:0042742;gbkey=CDS;go_process=defense response to bacterium|0042742||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607699.1;locus_tag=LPH40_RS01435;product=Blp family class II bacteriocin;protein_id=WP_230428225.1;transl_table=11 NZ_CP087685.1 RefSeq gene 342620 343309 . - . ID=gene-LPH40_RS01440;Name=crp;gbkey=Gene;gene=crp;gene_biotype=protein_coding;locus_tag=LPH40_RS01440;old_locus_tag=LPH40_01440 NZ_CP087685.1 Protein Homology CDS 342620 343309 . - 0 ID=cds-WP_038272640.1;Parent=gene-LPH40_RS01440;Dbxref=Genbank:WP_038272640.1;Name=WP_038272640.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=crp;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368067.1;locus_tag=LPH40_RS01440;product=cAMP-activated global transcriptional regulator CRP;protein_id=WP_038272640.1;transl_table=11 NZ_CP087685.1 RefSeq gene 343451 344245 . + . ID=gene-LPH40_RS01445;Name=speD;gbkey=Gene;gene=speD;gene_biotype=protein_coding;locus_tag=LPH40_RS01445;old_locus_tag=LPH40_01445 NZ_CP087685.1 Protein Homology CDS 343451 344245 . + 0 ID=cds-WP_038272638.1;Parent=gene-LPH40_RS01445;Dbxref=Genbank:WP_038272638.1;Name=WP_038272638.1;Ontology_term=GO:0008295,GO:0004014;gbkey=CDS;gene=speD;go_function=adenosylmethionine decarboxylase activity|0004014||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411315.1;locus_tag=LPH40_RS01445;product=adenosylmethionine decarboxylase;protein_id=WP_038272638.1;transl_table=11 NZ_CP087685.1 RefSeq gene 344499 345152 . - . ID=gene-LPH40_RS01450;Name=coq7;gbkey=Gene;gene=coq7;gene_biotype=protein_coding;locus_tag=LPH40_RS01450;old_locus_tag=LPH40_01450 NZ_CP087685.1 Protein Homology CDS 344499 345152 . - 0 ID=cds-WP_038272659.1;Parent=gene-LPH40_RS01450;Dbxref=Genbank:WP_038272659.1;Name=WP_038272659.1;Ontology_term=GO:0006744,GO:0004497;gbkey=CDS;gene=coq7;go_function=monooxygenase activity|0004497||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097769.1;locus_tag=LPH40_RS01450;product=2-polyprenyl-3-methyl-6-methoxy-1%2C4-benzoquinone monooxygenase;protein_id=WP_038272659.1;transl_table=11 NZ_CP087685.1 RefSeq gene 345321 345749 . + . ID=gene-LPH40_RS01455;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=LPH40_RS01455;old_locus_tag=LPH40_01455 NZ_CP087685.1 Protein Homology CDS 345321 345749 . + 0 ID=cds-WP_038272637.1;Parent=gene-LPH40_RS01455;Dbxref=Genbank:WP_038272637.1;Name=WP_038272637.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplM;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451009.1;locus_tag=LPH40_RS01455;product=50S ribosomal protein L13;protein_id=WP_038272637.1;transl_table=11 NZ_CP087685.1 RefSeq gene 345753 346145 . + . ID=gene-LPH40_RS01460;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=LPH40_RS01460;old_locus_tag=LPH40_01460 NZ_CP087685.1 Protein Homology CDS 345753 346145 . + 0 ID=cds-WP_038272635.1;Parent=gene-LPH40_RS01460;Dbxref=Genbank:WP_038272635.1;Name=WP_038272635.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083670.1;locus_tag=LPH40_RS01460;product=30S ribosomal protein S9;protein_id=WP_038272635.1;transl_table=11 NZ_CP087685.1 RefSeq gene 346269 347588 . - . ID=gene-LPH40_RS01465;Name=LPH40_RS01465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01465;old_locus_tag=LPH40_01465 NZ_CP087685.1 Protein Homology CDS 346269 347588 . - 0 ID=cds-WP_038272633.1;Parent=gene-LPH40_RS01465;Dbxref=Genbank:WP_038272633.1;Name=WP_038272633.1;Ontology_term=GO:0046912;gbkey=CDS;go_function=acyltransferase activity%2C acyl groups converted into alkyl on transfer|0046912||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156870.1;locus_tag=LPH40_RS01465;product=citrate synthase;protein_id=WP_038272633.1;transl_table=11 NZ_CP087685.1 RefSeq gene 347815 348057 . - . ID=gene-LPH40_RS01470;Name=LPH40_RS01470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01470;old_locus_tag=LPH40_01470 NZ_CP087685.1 Protein Homology CDS 347815 348057 . - 0 ID=cds-WP_038272630.1;Parent=gene-LPH40_RS01470;Dbxref=Genbank:WP_038272630.1;Name=WP_038272630.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087863.1;locus_tag=LPH40_RS01470;product=type B 50S ribosomal protein L31;protein_id=WP_038272630.1;transl_table=11 NZ_CP087685.1 RefSeq gene 348758 349459 . - . ID=gene-LPH40_RS01475;Name=tsaB;gbkey=Gene;gene=tsaB;gene_biotype=protein_coding;locus_tag=LPH40_RS01475;old_locus_tag=LPH40_01475 NZ_CP087685.1 Protein Homology CDS 348758 349459 . - 0 ID=cds-WP_038272628.1;Parent=gene-LPH40_RS01475;Dbxref=Genbank:WP_038272628.1;Name=WP_038272628.1;Ontology_term=GO:0006400,GO:0003725;gbkey=CDS;gene=tsaB;go_function=double-stranded RNA binding|0003725||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375169.1;locus_tag=LPH40_RS01475;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB;protein_id=WP_038272628.1;transl_table=11 NZ_CP087685.1 RefSeq gene 349738 350673 . - . ID=gene-LPH40_RS01480;Name=LPH40_RS01480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01480;old_locus_tag=LPH40_01480 NZ_CP087685.1 Protein Homology CDS 349738 350673 . - 0 ID=cds-WP_038272625.1;Parent=gene-LPH40_RS01480;Dbxref=Genbank:WP_038272625.1;Name=WP_038272625.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083674.1;locus_tag=LPH40_RS01480;product=LysR substrate-binding domain-containing protein;protein_id=WP_038272625.1;transl_table=11 NZ_CP087685.1 RefSeq gene 350778 352367 . - . ID=gene-LPH40_RS01485;Name=ahpF;gbkey=Gene;gene=ahpF;gene_biotype=protein_coding;locus_tag=LPH40_RS01485;old_locus_tag=LPH40_01485 NZ_CP087685.1 Protein Homology CDS 350778 352367 . - 0 ID=cds-WP_038272622.1;Parent=gene-LPH40_RS01485;Dbxref=Genbank:WP_038272622.1;Name=WP_038272622.1;Ontology_term=GO:0006805,GO:0009398,GO:0016668;gbkey=CDS;gene=ahpF;go_function=oxidoreductase activity%2C acting on a sulfur group of donors%2C NAD(P) as acceptor|0016668||IEA;go_process=xenobiotic metabolic process|0006805||IEA,FMN biosynthetic process|0009398||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488827.1;locus_tag=LPH40_RS01485;product=alkyl hydroperoxide reductase subunit F;protein_id=WP_038272622.1;transl_table=11 NZ_CP087685.1 RefSeq gene 352555 353115 . - . ID=gene-LPH40_RS01490;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=LPH40_RS01490;old_locus_tag=LPH40_01490 NZ_CP087685.1 Protein Homology CDS 352555 353115 . - 0 ID=cds-WP_038272620.1;Parent=gene-LPH40_RS01490;Dbxref=Genbank:WP_038272620.1;Name=WP_038272620.1;Ontology_term=GO:0006979,GO:0102039;gbkey=CDS;gene=ahpC;go_function=NADH-dependent peroxiredoxin activity|0102039||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003858764.1;locus_tag=LPH40_RS01490;product=alkyl hydroperoxide reductase subunit C;protein_id=WP_038272620.1;transl_table=11 NZ_CP087685.1 RefSeq gene 353578 361464 . - . ID=gene-LPH40_RS01495;Name=LPH40_RS01495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01495;old_locus_tag=LPH40_01495 NZ_CP087685.1 Protein Homology CDS 353578 361464 . - 0 ID=cds-WP_171898087.1;Parent=gene-LPH40_RS01495;Dbxref=Genbank:WP_171898087.1;Name=WP_171898087.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083677.1;locus_tag=LPH40_RS01495;product=YadA-like family protein;protein_id=WP_171898087.1;transl_table=11 NZ_CP087685.1 RefSeq gene 362256 364550 . - . ID=gene-LPH40_RS01500;Name=gspD;gbkey=Gene;gene=gspD;gene_biotype=protein_coding;locus_tag=LPH40_RS01500;old_locus_tag=LPH40_01500 NZ_CP087685.1 Protein Homology CDS 362256 364550 . - 0 ID=cds-WP_038272922.1;Parent=gene-LPH40_RS01500;Dbxref=Genbank:WP_038272922.1;Name=WP_038272922.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspD;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851910.1;locus_tag=LPH40_RS01500;product=type II secretion system secretin GspD;protein_id=WP_038272922.1;transl_table=11 NZ_CP087685.1 RefSeq gene 364592 365407 . - . ID=gene-LPH40_RS01505;Name=LPH40_RS01505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01505;old_locus_tag=LPH40_01505 NZ_CP087685.1 Protein Homology CDS 364592 365407 . - 0 ID=cds-WP_038272921.1;Parent=gene-LPH40_RS01505;Dbxref=Genbank:WP_038272921.1;Name=WP_038272921.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851909.1;locus_tag=LPH40_RS01505;product=hypothetical protein;protein_id=WP_038272921.1;transl_table=11 NZ_CP087685.1 RefSeq gene 365397 366029 . - . ID=gene-LPH40_RS01510;Name=gspM;gbkey=Gene;gene=gspM;gene_biotype=protein_coding;locus_tag=LPH40_RS01510;old_locus_tag=LPH40_01510 NZ_CP087685.1 Protein Homology CDS 365397 366029 . - 0 ID=cds-WP_038272918.1;Parent=gene-LPH40_RS01510;Dbxref=Genbank:WP_038272918.1;Name=WP_038272918.1;gbkey=CDS;gene=gspM;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083680.1;locus_tag=LPH40_RS01510;product=type II secretion system protein GspM;protein_id=WP_038272918.1;transl_table=11 NZ_CP087685.1 RefSeq gene 366010 367137 . - . ID=gene-LPH40_RS01515;Name=LPH40_RS01515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01515;old_locus_tag=LPH40_01515 NZ_CP087685.1 Protein Homology CDS 366010 367137 . - 0 ID=cds-WP_038272917.1;Parent=gene-LPH40_RS01515;Dbxref=Genbank:WP_038272917.1;Name=WP_038272917.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035907.1;locus_tag=LPH40_RS01515;product=PilN domain-containing protein;protein_id=WP_038272917.1;transl_table=11 NZ_CP087685.1 RefSeq gene 367134 367424 . - . ID=gene-LPH40_RS01520;Name=LPH40_RS01520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01520;old_locus_tag=LPH40_01520 NZ_CP087685.1 GeneMarkS-2+ CDS 367134 367424 . - 0 ID=cds-WP_114867163.1;Parent=gene-LPH40_RS01520;Dbxref=Genbank:WP_114867163.1;Name=WP_114867163.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01520;product=general secretion pathway protein GspK;protein_id=WP_114867163.1;transl_table=11 NZ_CP087685.1 RefSeq gene 367670 367813 . - . ID=gene-LPH40_RS01525;Name=LPH40_RS01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01525;old_locus_tag=LPH40_01525 NZ_CP087685.1 GeneMarkS-2+ CDS 367670 367813 . - 0 ID=cds-WP_230428226.1;Parent=gene-LPH40_RS01525;Dbxref=Genbank:WP_230428226.1;Name=WP_230428226.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01525;product=hypothetical protein;protein_id=WP_230428226.1;transl_table=11 NZ_CP087685.1 RefSeq gene 367846 368691 . - . ID=gene-LPH40_RS01530;Name=LPH40_RS01530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01530;old_locus_tag=LPH40_01530 NZ_CP087685.1 Protein Homology CDS 367846 368691 . - 0 ID=cds-WP_038272913.1;Parent=gene-LPH40_RS01530;Dbxref=Genbank:WP_038272913.1;Name=WP_038272913.1;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158144.1;locus_tag=LPH40_RS01530;product=type II secretion system protein GspK;protein_id=WP_038272913.1;transl_table=11 NZ_CP087685.1 RefSeq gene 368691 369317 . - . ID=gene-LPH40_RS01535;Name=LPH40_RS01535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01535;old_locus_tag=LPH40_01535 NZ_CP087685.1 Protein Homology CDS 368691 369317 . - 0 ID=cds-WP_038272911.1;Parent=gene-LPH40_RS01535;Dbxref=Genbank:WP_038272911.1;Name=WP_038272911.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852924.1;locus_tag=LPH40_RS01535;product=type II secretion system protein J;protein_id=WP_038272911.1;transl_table=11 NZ_CP087685.1 RefSeq gene 369314 369712 . - . ID=gene-LPH40_RS01540;Name=LPH40_RS01540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01540;old_locus_tag=LPH40_01540 NZ_CP087685.1 Protein Homology CDS 369314 369712 . - 0 ID=cds-WP_038272909.1;Parent=gene-LPH40_RS01540;Dbxref=Genbank:WP_038272909.1;Name=WP_038272909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158146.1;locus_tag=LPH40_RS01540;product=prepilin-type N-terminal cleavage/methylation domain-containing protein;protein_id=WP_038272909.1;transl_table=11 NZ_CP087685.1 RefSeq gene 369709 370164 . - . ID=gene-LPH40_RS01545;Name=LPH40_RS01545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01545;old_locus_tag=LPH40_01545 NZ_CP087685.1 Protein Homology CDS 369709 370164 . - 0 ID=cds-WP_114867164.1;Parent=gene-LPH40_RS01545;Dbxref=Genbank:WP_114867164.1;Name=WP_114867164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894021.1;locus_tag=LPH40_RS01545;product=type II secretion system protein GspH;protein_id=WP_114867164.1;transl_table=11 NZ_CP087685.1 RefSeq gene 370221 370655 . - . ID=gene-LPH40_RS01550;Name=gspG;gbkey=Gene;gene=gspG;gene_biotype=protein_coding;locus_tag=LPH40_RS01550;old_locus_tag=LPH40_01550 NZ_CP087685.1 Protein Homology CDS 370221 370655 . - 0 ID=cds-WP_038272904.1;Parent=gene-LPH40_RS01550;Dbxref=Genbank:WP_038272904.1;Name=WP_038272904.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspG;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088955.1;locus_tag=LPH40_RS01550;product=type II secretion system major pseudopilin GspG;protein_id=WP_038272904.1;transl_table=11 NZ_CP087685.1 RefSeq gene 370820 372037 . - . ID=gene-LPH40_RS01555;Name=LPH40_RS01555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01555;old_locus_tag=LPH40_01555 NZ_CP087685.1 Protein Homology CDS 370820 372037 . - 0 ID=cds-WP_038272902.1;Parent=gene-LPH40_RS01555;Dbxref=Genbank:WP_038272902.1;Name=WP_038272902.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504592.1;locus_tag=LPH40_RS01555;product=type II secretion system F family protein;protein_id=WP_038272902.1;transl_table=11 NZ_CP087685.1 RefSeq gene 372073 373788 . - . ID=gene-LPH40_RS01560;Name=gspE;gbkey=Gene;gene=gspE;gene_biotype=protein_coding;locus_tag=LPH40_RS01560;old_locus_tag=LPH40_01560 NZ_CP087685.1 Protein Homology CDS 372073 373788 . - 0 ID=cds-WP_038272901.1;Parent=gene-LPH40_RS01560;Dbxref=Genbank:WP_038272901.1;Name=WP_038272901.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspE;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010343590.1;locus_tag=LPH40_RS01560;product=type II secretion system ATPase GspE;protein_id=WP_038272901.1;transl_table=11 NZ_CP087685.1 RefSeq gene 374123 380401 . - . ID=gene-LPH40_RS01565;Name=LPH40_RS01565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01565;old_locus_tag=LPH40_01565 NZ_CP087685.1 Protein Homology CDS 374123 380401 . - 0 ID=cds-WP_114867165.1;Parent=gene-LPH40_RS01565;Dbxref=Genbank:WP_114867165.1;Name=WP_114867165.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015831.2;locus_tag=LPH40_RS01565;product=YadA-like family protein;protein_id=WP_114867165.1;transl_table=11 NZ_CP087685.1 RefSeq gene 381284 382195 . - . ID=gene-LPH40_RS01570;Name=LPH40_RS01570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01570;old_locus_tag=LPH40_01570 NZ_CP087685.1 Protein Homology CDS 381284 382195 . - 0 ID=cds-WP_038273112.1;Parent=gene-LPH40_RS01570;Dbxref=Genbank:WP_038273112.1;Name=WP_038273112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088966.1;locus_tag=LPH40_RS01570;product=AEC family transporter;protein_id=WP_038273112.1;transl_table=11 NZ_CP087685.1 RefSeq gene 382213 383112 . - . ID=gene-LPH40_RS01575;Name=LPH40_RS01575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01575;old_locus_tag=LPH40_01575 NZ_CP087685.1 Protein Homology CDS 382213 383112 . - 0 ID=cds-WP_230428227.1;Parent=gene-LPH40_RS01575;Dbxref=Genbank:WP_230428227.1;Name=WP_230428227.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: protein motif:HMM:NF014698.2;locus_tag=LPH40_RS01575;product=TauD/TfdA family dioxygenase;protein_id=WP_230428227.1;transl_table=11 NZ_CP087685.1 RefSeq gene 383681 384508 . + . ID=gene-LPH40_RS01580;Name=prmC;gbkey=Gene;gene=prmC;gene_biotype=protein_coding;locus_tag=LPH40_RS01580;old_locus_tag=LPH40_01580 NZ_CP087685.1 Protein Homology CDS 383681 384508 . + 0 ID=cds-WP_038273117.1;Parent=gene-LPH40_RS01580;Dbxref=Genbank:WP_038273117.1;Name=WP_038273117.1;Ontology_term=GO:0006412,GO:0018364,GO:0008757;gbkey=CDS;gene=prmC;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=translation|0006412||IEA,peptidyl-glutamine methylation|0018364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894013.1;locus_tag=LPH40_RS01580;product=peptide chain release factor N(5)-glutamine methyltransferase;protein_id=WP_038273117.1;transl_table=11 NZ_CP087685.1 RefSeq gene 384546 384953 . + . ID=gene-LPH40_RS01585;Name=LPH40_RS01585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01585;old_locus_tag=LPH40_01585 NZ_CP087685.1 Protein Homology CDS 384546 384953 . + 0 ID=cds-WP_230430683.1;Parent=gene-LPH40_RS01585;Dbxref=Genbank:WP_230430683.1;Name=WP_230430683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003465222.1;locus_tag=LPH40_RS01585;product=DUF5713 family protein;protein_id=WP_230430683.1;transl_table=11 NZ_CP087685.1 RefSeq gene 384988 385929 . + . ID=gene-LPH40_RS01590;Name=pip;gbkey=Gene;gene=pip;gene_biotype=protein_coding;locus_tag=LPH40_RS01590;old_locus_tag=LPH40_01590 NZ_CP087685.1 Protein Homology CDS 384988 385929 . + 0 ID=cds-WP_038271970.1;Parent=gene-LPH40_RS01590;Dbxref=Genbank:WP_038271970.1;Name=WP_038271970.1;Ontology_term=GO:0030163,GO:0004177;gbkey=CDS;gene=pip;go_function=aminopeptidase activity|0004177||IEA;go_process=protein catabolic process|0030163||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852150.1;locus_tag=LPH40_RS01590;product=prolyl aminopeptidase;protein_id=WP_038271970.1;transl_table=11 NZ_CP087685.1 RefSeq gene 386010 386348 . - . ID=gene-LPH40_RS01595;Name=LPH40_RS01595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01595;old_locus_tag=LPH40_01595 NZ_CP087685.1 Protein Homology CDS 386010 386348 . - 0 ID=cds-WP_038271968.1;Parent=gene-LPH40_RS01595;Dbxref=Genbank:WP_038271968.1;Name=WP_038271968.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083693.1;locus_tag=LPH40_RS01595;product=PilZ domain-containing protein;protein_id=WP_038271968.1;transl_table=11 NZ_CP087685.1 RefSeq gene 386345 388816 . - . ID=gene-LPH40_RS01600;Name=LPH40_RS01600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01600;old_locus_tag=LPH40_01600 NZ_CP087685.1 Protein Homology CDS 386345 388816 . - 0 ID=cds-WP_038271966.1;Parent=gene-LPH40_RS01600;Dbxref=Genbank:WP_038271966.1;Name=WP_038271966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088987.1;locus_tag=LPH40_RS01600;product=DUF1631 domain-containing protein;protein_id=WP_038271966.1;transl_table=11 NZ_CP087685.1 RefSeq gene 388891 390045 . - . ID=gene-LPH40_RS01605;Name=hemW;gbkey=Gene;gene=hemW;gene_biotype=protein_coding;locus_tag=LPH40_RS01605;old_locus_tag=LPH40_01605 NZ_CP087685.1 Protein Homology CDS 388891 390045 . - 0 ID=cds-WP_038271990.1;Parent=gene-LPH40_RS01605;Dbxref=Genbank:WP_038271990.1;Name=WP_038271990.1;Ontology_term=GO:0006779,GO:0051989;gbkey=CDS;gene=hemW;go_function=coproporphyrinogen dehydrogenase activity|0051989||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156861.1;locus_tag=LPH40_RS01605;product=radical SAM family heme chaperone HemW;protein_id=WP_038271990.1;transl_table=11 NZ_CP087685.1 RefSeq gene 390260 390859 . - . ID=gene-LPH40_RS01610;Name=rdgB;gbkey=Gene;gene=rdgB;gene_biotype=protein_coding;locus_tag=LPH40_RS01610;old_locus_tag=LPH40_01610 NZ_CP087685.1 Protein Homology CDS 390260 390859 . - 0 ID=cds-WP_038271988.1;Parent=gene-LPH40_RS01610;Dbxref=Genbank:WP_038271988.1;Name=WP_038271988.1;Ontology_term=GO:0006281,GO:0016462;gbkey=CDS;gene=rdgB;go_function=pyrophosphatase activity|0016462||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097758.1;locus_tag=LPH40_RS01610;product=RdgB/HAM1 family non-canonical purine NTP pyrophosphatase;protein_id=WP_038271988.1;transl_table=11 NZ_CP087685.1 RefSeq gene 390958 391683 . - . ID=gene-LPH40_RS01615;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=LPH40_RS01615;old_locus_tag=LPH40_01615 NZ_CP087685.1 Protein Homology CDS 390958 391683 . - 0 ID=cds-WP_038271963.1;Parent=gene-LPH40_RS01615;Dbxref=Genbank:WP_038271963.1;Name=WP_038271963.1;Ontology_term=GO:0008033,GO:0004549;gbkey=CDS;gene=rph;go_function=tRNA-specific ribonuclease activity|0004549||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083697.1;locus_tag=LPH40_RS01615;product=ribonuclease PH;protein_id=WP_038271963.1;transl_table=11 NZ_CP087685.1 RefSeq gene 391793 392653 . + . ID=gene-LPH40_RS01620;Name=LPH40_RS01620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01620;old_locus_tag=LPH40_01620 NZ_CP087685.1 Protein Homology CDS 391793 392653 . + 0 ID=cds-WP_038271959.1;Parent=gene-LPH40_RS01620;Dbxref=Genbank:WP_038271959.1;Name=WP_038271959.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996763.1;locus_tag=LPH40_RS01620;product=YicC family protein;protein_id=WP_038271959.1;transl_table=11 NZ_CP087685.1 RefSeq gene 392753 393367 . + . ID=gene-LPH40_RS01625;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=LPH40_RS01625;old_locus_tag=LPH40_01625 NZ_CP087685.1 Protein Homology CDS 392753 393367 . + 0 ID=cds-WP_038271956.1;Parent=gene-LPH40_RS01625;Dbxref=Genbank:WP_038271956.1;Name=WP_038271956.1;Ontology_term=GO:0015949,GO:0004385;gbkey=CDS;gene=gmk;go_function=guanylate kinase activity|0004385||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013534224.1;locus_tag=LPH40_RS01625;product=guanylate kinase;protein_id=WP_038271956.1;transl_table=11 NZ_CP087685.1 RefSeq gene 393590 393889 . + . ID=gene-LPH40_RS01630;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=LPH40_RS01630;old_locus_tag=LPH40_01630 NZ_CP087685.1 Protein Homology CDS 393590 393889 . + 0 ID=cds-WP_038271953.1;Parent=gene-LPH40_RS01630;Dbxref=Genbank:WP_038271953.1;Name=WP_038271953.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoZ;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812428.1;locus_tag=LPH40_RS01630;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_038271953.1;transl_table=11 NZ_CP087685.1 RefSeq gene 395209 397188 . - . ID=gene-LPH40_RS01635;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=LPH40_RS01635;old_locus_tag=LPH40_01635 NZ_CP087685.1 Protein Homology CDS 395209 397188 . - 0 ID=cds-WP_038271950.1;Parent=gene-LPH40_RS01635;Dbxref=Genbank:WP_038271950.1;Name=WP_038271950.1;Ontology_term=GO:0006790,GO:0003924,GO:0005525;gbkey=CDS;gene=cysN;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894002.1;locus_tag=LPH40_RS01635;product=sulfate adenylyltransferase subunit CysN;protein_id=WP_038271950.1;transl_table=11 NZ_CP087685.1 RefSeq gene 397188 398096 . - . ID=gene-LPH40_RS01640;Name=cysD;gbkey=Gene;gene=cysD;gene_biotype=protein_coding;locus_tag=LPH40_RS01640;old_locus_tag=LPH40_01640 NZ_CP087685.1 Protein Homology CDS 397188 398096 . - 0 ID=cds-WP_038271949.1;Parent=gene-LPH40_RS01640;Dbxref=Genbank:WP_038271949.1;Name=WP_038271949.1;Ontology_term=GO:0019419,GO:0004781;gbkey=CDS;gene=cysD;go_function=sulfate adenylyltransferase (ATP) activity|0004781||IEA;go_process=sulfate reduction|0019419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370926.1;locus_tag=LPH40_RS01640;product=sulfate adenylyltransferase subunit CysD;protein_id=WP_038271949.1;transl_table=11 NZ_CP087685.1 RefSeq gene 398303 400141 . + . ID=gene-LPH40_RS01645;Name=LPH40_RS01645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01645;old_locus_tag=LPH40_01645 NZ_CP087685.1 Protein Homology CDS 398303 400141 . + 0 ID=cds-WP_038271947.1;Parent=gene-LPH40_RS01645;Dbxref=Genbank:WP_038271947.1;Name=WP_038271947.1;Ontology_term=GO:0006790,GO:0004783,GO:0009337;gbkey=CDS;go_component=sulfite reductase complex (NADPH)|0009337||IEA;go_function=sulfite reductase (NADPH) activity|0004783||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504375.1;locus_tag=LPH40_RS01645;product=assimilatory sulfite reductase (NADPH) flavoprotein subunit;protein_id=WP_038271947.1;transl_table=11 NZ_CP087685.1 RefSeq gene 400265 401971 . + . ID=gene-LPH40_RS01650;Name=cysI;gbkey=Gene;gene=cysI;gene_biotype=protein_coding;locus_tag=LPH40_RS01650;old_locus_tag=LPH40_01650 NZ_CP087685.1 Protein Homology CDS 400265 401971 . + 0 ID=cds-WP_038271945.1;Parent=gene-LPH40_RS01650;Dbxref=Genbank:WP_038271945.1;Name=WP_038271945.1;Ontology_term=GO:0000103,GO:0004783;gbkey=CDS;gene=cysI;go_function=sulfite reductase (NADPH) activity|0004783||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089014.1;locus_tag=LPH40_RS01650;product=assimilatory sulfite reductase (NADPH) hemoprotein subunit;protein_id=WP_038271945.1;transl_table=11 NZ_CP087685.1 RefSeq gene 401968 402699 . + . ID=gene-LPH40_RS01655;Name=LPH40_RS01655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01655;old_locus_tag=LPH40_01655 NZ_CP087685.1 Protein Homology CDS 401968 402699 . + 0 ID=cds-WP_038271943.1;Parent=gene-LPH40_RS01655;Dbxref=Genbank:WP_038271943.1;Name=WP_038271943.1;Ontology_term=GO:0019379,GO:0003824,GO:0004604;gbkey=CDS;go_function=catalytic activity|0003824||IEA,phosphoadenylyl-sulfate reductase (thioredoxin) activity|0004604||IEA;go_process=sulfate assimilation%2C phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)|0019379||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038282.1;locus_tag=LPH40_RS01655;product=phosphoadenylyl-sulfate reductase;protein_id=WP_038271943.1;transl_table=11 NZ_CP087685.1 RefSeq gene 402938 403141 . - . ID=gene-LPH40_RS01660;Name=LPH40_RS01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01660;old_locus_tag=LPH40_01660 NZ_CP087685.1 GeneMarkS-2+ CDS 402938 403141 . - 0 ID=cds-WP_162814103.1;Parent=gene-LPH40_RS01660;Dbxref=Genbank:WP_162814103.1;Name=WP_162814103.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01660;product=hypothetical protein;protein_id=WP_162814103.1;transl_table=11 NZ_CP087685.1 RefSeq gene 403911 405962 . - . ID=gene-LPH40_RS01665;Name=LPH40_RS01665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01665;old_locus_tag=LPH40_01665 NZ_CP087685.1 Protein Homology CDS 403911 405962 . - 0 ID=cds-WP_038271941.1;Parent=gene-LPH40_RS01665;Dbxref=Genbank:WP_038271941.1;Name=WP_038271941.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083706.1;locus_tag=LPH40_RS01665;product=TonB-dependent receptor;protein_id=WP_038271941.1;transl_table=11 NZ_CP087685.1 RefSeq gene 406002 406139 . + . ID=gene-LPH40_RS01670;Name=LPH40_RS01670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01670;old_locus_tag=LPH40_01670 NZ_CP087685.1 GeneMarkS-2+ CDS 406002 406139 . + 0 ID=cds-WP_160165203.1;Parent=gene-LPH40_RS01670;Dbxref=Genbank:WP_160165203.1;Name=WP_160165203.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01670;product=hypothetical protein;protein_id=WP_160165203.1;transl_table=11 NZ_CP087685.1 RefSeq gene 406884 407330 . + . ID=gene-LPH40_RS01675;Name=LPH40_RS01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01675;old_locus_tag=LPH40_01675 NZ_CP087685.1 Protein Homology CDS 406884 407330 . + 0 ID=cds-WP_038271986.1;Parent=gene-LPH40_RS01675;Dbxref=Genbank:WP_038271986.1;Name=WP_038271986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893996.1;locus_tag=LPH40_RS01675;product=DUF192 domain-containing protein;protein_id=WP_038271986.1;transl_table=11 NZ_CP087685.1 RefSeq gene 407419 408264 . + . ID=gene-LPH40_RS01680;Name=LPH40_RS01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01680;old_locus_tag=LPH40_01680 NZ_CP087685.1 Protein Homology CDS 407419 408264 . + 0 ID=cds-WP_051482355.1;Parent=gene-LPH40_RS01680;Dbxref=Genbank:WP_051482355.1;Name=WP_051482355.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851900.1;locus_tag=LPH40_RS01680;product=SirB1 family protein;protein_id=WP_051482355.1;transl_table=11 NZ_CP087685.1 RefSeq gene 409714 410130 . - . ID=gene-LPH40_RS01685;Name=LPH40_RS01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01685;old_locus_tag=LPH40_01685 NZ_CP087685.1 Protein Homology CDS 409714 410130 . - 0 ID=cds-WP_038271936.1;Parent=gene-LPH40_RS01685;Dbxref=Genbank:WP_038271936.1;Name=WP_038271936.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083709.1;locus_tag=LPH40_RS01685;product=H-NS family nucleoid-associated regulatory protein;protein_id=WP_038271936.1;transl_table=11 NZ_CP087685.1 RefSeq gene 410550 410801 . + . ID=gene-LPH40_RS01690;Name=LPH40_RS01690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01690;old_locus_tag=LPH40_01690 NZ_CP087685.1 GeneMarkS-2+ CDS 410550 410801 . + 0 ID=cds-WP_160165202.1;Parent=gene-LPH40_RS01690;Dbxref=Genbank:WP_160165202.1;Name=WP_160165202.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01690;product=hypothetical protein;protein_id=WP_160165202.1;transl_table=11 NZ_CP087685.1 RefSeq gene 412645 412791 . - . ID=gene-LPH40_RS01695;Name=LPH40_RS01695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01695;old_locus_tag=LPH40_01695 NZ_CP087685.1 GeneMarkS-2+ CDS 412645 412791 . - 0 ID=cds-WP_160165201.1;Parent=gene-LPH40_RS01695;Dbxref=Genbank:WP_160165201.1;Name=WP_160165201.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01695;product=hypothetical protein;protein_id=WP_160165201.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 413566 413788 . - . ID=gene-LPH40_RS01700;Name=LPH40_RS01700;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS01700;old_locus_tag=LPH40_01700;partial=true;pseudo=true;start_range=.,413566 NZ_CP087685.1 Protein Homology CDS 413566 413788 . - 0 ID=cds-LPH40_RS01700;Parent=gene-LPH40_RS01700;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LPH40_RS01700;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,413566;transl_table=11 NZ_CP087685.1 RefSeq gene 414637 415116 . + . ID=gene-LPH40_RS01705;Name=LPH40_RS01705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01705;old_locus_tag=LPH40_01705 NZ_CP087685.1 Protein Homology CDS 414637 415116 . + 0 ID=cds-WP_038271933.1;Parent=gene-LPH40_RS01705;Dbxref=Genbank:WP_038271933.1;Name=WP_038271933.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852160.1;locus_tag=LPH40_RS01705;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_038271933.1;transl_table=11 NZ_CP087685.1 RefSeq gene 415405 416019 . - . ID=gene-LPH40_RS01710;Name=LPH40_RS01710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01710;old_locus_tag=LPH40_01710 NZ_CP087685.1 Protein Homology CDS 415405 416019 . - 0 ID=cds-WP_051482357.1;Parent=gene-LPH40_RS01710;Dbxref=Genbank:WP_051482357.1;Name=WP_051482357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852161.1;locus_tag=LPH40_RS01710;product=thioredoxin family protein;protein_id=WP_051482357.1;transl_table=11 NZ_CP087685.1 RefSeq gene 416676 418565 . - . ID=gene-LPH40_RS01715;Name=LPH40_RS01715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01715;old_locus_tag=LPH40_01715 NZ_CP087685.1 Protein Homology CDS 416676 418565 . - 0 ID=cds-WP_038271983.1;Parent=gene-LPH40_RS01715;Dbxref=Genbank:WP_038271983.1;Name=WP_038271983.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852162.1;locus_tag=LPH40_RS01715;product=M1 family metallopeptidase;protein_id=WP_038271983.1;transl_table=11 NZ_CP087685.1 RefSeq gene 418913 419674 . - . ID=gene-LPH40_RS01720;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=LPH40_RS01720;old_locus_tag=LPH40_01720 NZ_CP087685.1 Protein Homology CDS 418913 419674 . - 0 ID=cds-WP_038271927.1;Parent=gene-LPH40_RS01720;Dbxref=Genbank:WP_038271927.1;Name=WP_038271927.1;Ontology_term=GO:0008168;gbkey=CDS;gene=ubiE;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852163.1;locus_tag=LPH40_RS01720;product=bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase UbiE;protein_id=WP_038271927.1;transl_table=11 NZ_CP087685.1 RefSeq gene 420090 421445 . + . ID=gene-LPH40_RS01725;Name=LPH40_RS01725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01725;old_locus_tag=LPH40_01725 NZ_CP087685.1 Protein Homology CDS 420090 421445 . + 0 ID=cds-WP_038271981.1;Parent=gene-LPH40_RS01725;Dbxref=Genbank:WP_038271981.1;Name=WP_038271981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893987.1;locus_tag=LPH40_RS01725;product=DUF2252 family protein;protein_id=WP_038271981.1;transl_table=11 NZ_CP087685.1 RefSeq gene 421640 423013 . - . ID=gene-LPH40_RS01730;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=LPH40_RS01730;old_locus_tag=LPH40_01730 NZ_CP087685.1 Protein Homology CDS 421640 423013 . - 0 ID=cds-WP_038271925.1;Parent=gene-LPH40_RS01730;Dbxref=Genbank:WP_038271925.1;Name=WP_038271925.1;Ontology_term=GO:0005524,GO:0008233,GO:0016887;gbkey=CDS;gene=hslU;go_function=ATP binding|0005524||IEA,peptidase activity|0008233||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850946.1;locus_tag=LPH40_RS01730;product=ATP-dependent protease ATPase subunit HslU;protein_id=WP_038271925.1;transl_table=11 NZ_CP087685.1 RefSeq gene 423080 423631 . - . ID=gene-LPH40_RS01735;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=LPH40_RS01735;old_locus_tag=LPH40_01735 NZ_CP087685.1 Protein Homology CDS 423080 423631 . - 0 ID=cds-WP_038271923.1;Parent=gene-LPH40_RS01735;Dbxref=Genbank:WP_038271923.1;Name=WP_038271923.1;Ontology_term=GO:0051603,GO:0004298;gbkey=CDS;gene=hslV;go_function=threonine-type endopeptidase activity|0004298||IEA;go_process=proteolysis involved in protein catabolic process|0051603||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260360.1;locus_tag=LPH40_RS01735;product=ATP-dependent protease subunit HslV;protein_id=WP_038271923.1;transl_table=11 NZ_CP087685.1 RefSeq gene 425023 425532 . + . ID=gene-LPH40_RS01740;Name=LPH40_RS01740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01740;old_locus_tag=LPH40_01740 NZ_CP087685.1 GeneMarkS-2+ CDS 425023 425532 . + 0 ID=cds-WP_038271920.1;Parent=gene-LPH40_RS01740;Dbxref=Genbank:WP_038271920.1;Name=WP_038271920.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01740;product=hypothetical protein;protein_id=WP_038271920.1;transl_table=11 NZ_CP087685.1 RefSeq gene 425999 426883 . - . ID=gene-LPH40_RS01745;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=LPH40_RS01745;old_locus_tag=LPH40_01745 NZ_CP087685.1 Protein Homology CDS 425999 426883 . - 0 ID=cds-WP_038271918.1;Parent=gene-LPH40_RS01745;Dbxref=Genbank:WP_038271918.1;Name=WP_038271918.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerC;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089050.1;locus_tag=LPH40_RS01745;product=tyrosine recombinase XerC;protein_id=WP_038271918.1;transl_table=11 NZ_CP087685.1 RefSeq gene 426910 427581 . - . ID=gene-LPH40_RS01750;Name=LPH40_RS01750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01750;old_locus_tag=LPH40_01750 NZ_CP087685.1 Protein Homology CDS 426910 427581 . - 0 ID=cds-WP_038271916.1;Parent=gene-LPH40_RS01750;Dbxref=Genbank:WP_038271916.1;Name=WP_038271916.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482765.1;locus_tag=LPH40_RS01750;product=DUF484 family protein;protein_id=WP_038271916.1;transl_table=11 NZ_CP087685.1 RefSeq gene 427578 428432 . - . ID=gene-LPH40_RS01755;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=LPH40_RS01755;old_locus_tag=LPH40_01755 NZ_CP087685.1 Protein Homology CDS 427578 428432 . - 0 ID=cds-WP_038271979.1;Parent=gene-LPH40_RS01755;Dbxref=Genbank:WP_038271979.1;Name=WP_038271979.1;Ontology_term=GO:0009089,GO:0008837;gbkey=CDS;gene=dapF;go_function=diaminopimelate epimerase activity|0008837||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850942.1;locus_tag=LPH40_RS01755;product=diaminopimelate epimerase;protein_id=WP_038271979.1;transl_table=11 NZ_CP087685.1 RefSeq gene 428442 428651 . - . ID=gene-LPH40_RS01760;Name=LPH40_RS01760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01760;old_locus_tag=LPH40_01760 NZ_CP087685.1 Protein Homology CDS 428442 428651 . - 0 ID=cds-WP_038271914.1;Parent=gene-LPH40_RS01760;Dbxref=Genbank:WP_038271914.1;Name=WP_038271914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089059.1;locus_tag=LPH40_RS01760;product=lipoprotein;protein_id=WP_038271914.1;transl_table=11 NZ_CP087685.1 RefSeq gene 428742 430901 . - . ID=gene-LPH40_RS01765;Name=LPH40_RS01765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01765;old_locus_tag=LPH40_01765 NZ_CP087685.1 Protein Homology CDS 428742 430901 . - 0 ID=cds-WP_038271911.1;Parent=gene-LPH40_RS01765;Dbxref=Genbank:WP_038271911.1;Name=WP_038271911.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607685.1;locus_tag=LPH40_RS01765;product=oligopeptidase B;protein_id=WP_038271911.1;transl_table=11 NZ_CP087685.1 RefSeq gene 432322 432789 . - . ID=gene-LPH40_RS01770;Name=LPH40_RS01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01770;old_locus_tag=LPH40_01770 NZ_CP087685.1 Protein Homology CDS 432322 432789 . - 0 ID=cds-WP_038271909.1;Parent=gene-LPH40_RS01770;Dbxref=Genbank:WP_038271909.1;Name=WP_038271909.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237451.1;locus_tag=LPH40_RS01770;product=SET domain-containing protein-lysine N-methyltransferase;protein_id=WP_038271909.1;transl_table=11 NZ_CP087685.1 RefSeq gene 432954 433415 . + . ID=gene-LPH40_RS01775;Name=LPH40_RS01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01775;old_locus_tag=LPH40_01775 NZ_CP087685.1 Protein Homology CDS 432954 433415 . + 0 ID=cds-WP_038271908.1;Parent=gene-LPH40_RS01775;Dbxref=Genbank:WP_038271908.1;Name=WP_038271908.1;Ontology_term=GO:0006355,GO:0016226;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369303.1;locus_tag=LPH40_RS01775;product=SUF system Fe-S cluster assembly regulator;protein_id=WP_038271908.1;transl_table=11 NZ_CP087685.1 RefSeq gene 433435 434892 . + . ID=gene-LPH40_RS01780;Name=sufB;gbkey=Gene;gene=sufB;gene_biotype=protein_coding;locus_tag=LPH40_RS01780;old_locus_tag=LPH40_01780 NZ_CP087685.1 Protein Homology CDS 433435 434892 . + 0 ID=cds-WP_038271907.1;Parent=gene-LPH40_RS01780;Dbxref=Genbank:WP_038271907.1;Name=WP_038271907.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufB;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902344.1;locus_tag=LPH40_RS01780;product=Fe-S cluster assembly protein SufB;protein_id=WP_038271907.1;transl_table=11 NZ_CP087685.1 RefSeq gene 435022 435861 . + . ID=gene-LPH40_RS01785;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=LPH40_RS01785;old_locus_tag=LPH40_01785 NZ_CP087685.1 Protein Homology CDS 435022 435861 . + 0 ID=cds-WP_051482354.1;Parent=gene-LPH40_RS01785;Dbxref=Genbank:WP_051482354.1;Name=WP_051482354.1;Ontology_term=GO:0016226,GO:0005524;gbkey=CDS;gene=sufC;go_function=ATP binding|0005524||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893976.1;locus_tag=LPH40_RS01785;product=Fe-S cluster assembly ATPase SufC;protein_id=WP_051482354.1;transl_table=11 NZ_CP087685.1 RefSeq gene 435858 437126 . + . ID=gene-LPH40_RS01790;Name=sufD;gbkey=Gene;gene=sufD;gene_biotype=protein_coding;locus_tag=LPH40_RS01790;old_locus_tag=LPH40_01790 NZ_CP087685.1 Protein Homology CDS 435858 437126 . + 0 ID=cds-WP_038271905.1;Parent=gene-LPH40_RS01790;Dbxref=Genbank:WP_038271905.1;Name=WP_038271905.1;Ontology_term=GO:0016226,GO:0005198;gbkey=CDS;gene=sufD;go_function=structural molecule activity|0005198||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090672.1;locus_tag=LPH40_RS01790;product=Fe-S cluster assembly protein SufD;protein_id=WP_038271905.1;transl_table=11 NZ_CP087685.1 RefSeq gene 437114 438364 . + . ID=gene-LPH40_RS01795;Name=LPH40_RS01795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01795;old_locus_tag=LPH40_01795 NZ_CP087685.1 Protein Homology CDS 437114 438364 . + 0 ID=cds-WP_038271903.1;Parent=gene-LPH40_RS01795;Dbxref=Genbank:WP_038271903.1;Name=WP_038271903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337770.1;locus_tag=LPH40_RS01795;product=cysteine desulfurase;protein_id=WP_038271903.1;transl_table=11 NZ_CP087685.1 RefSeq gene 438680 439009 . + . ID=gene-LPH40_RS01800;Name=LPH40_RS01800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01800;old_locus_tag=LPH40_01800 NZ_CP087685.1 Protein Homology CDS 438680 439009 . + 0 ID=cds-WP_081755464.1;Parent=gene-LPH40_RS01800;Dbxref=Genbank:WP_081755464.1;Name=WP_081755464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508448.1;locus_tag=LPH40_RS01800;product=non-heme iron oxygenase ferredoxin subunit;protein_id=WP_081755464.1;transl_table=11 NZ_CP087685.1 RefSeq gene 439877 441022 . + . ID=gene-LPH40_RS01805;Name=LPH40_RS01805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01805;old_locus_tag=LPH40_01805 NZ_CP087685.1 Protein Homology CDS 439877 441022 . + 0 ID=cds-WP_038271897.1;Parent=gene-LPH40_RS01805;Dbxref=Genbank:WP_038271897.1;Name=WP_038271897.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850935.1;locus_tag=LPH40_RS01805;product=glycosyltransferase family 4 protein;protein_id=WP_038271897.1;transl_table=11 NZ_CP087685.1 RefSeq gene 441019 441873 . + . ID=gene-LPH40_RS01810;Name=LPH40_RS01810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01810;old_locus_tag=LPH40_01810 NZ_CP087685.1 Protein Homology CDS 441019 441873 . + 0 ID=cds-WP_038271895.1;Parent=gene-LPH40_RS01810;Dbxref=Genbank:WP_038271895.1;Name=WP_038271895.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083728.1;locus_tag=LPH40_RS01810;product=polysaccharide deacetylase family protein;protein_id=WP_038271895.1;transl_table=11 NZ_CP087685.1 RefSeq gene 441994 443340 . - . ID=gene-LPH40_RS01815;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=LPH40_RS01815;old_locus_tag=LPH40_01815 NZ_CP087685.1 Protein Homology CDS 441994 443340 . - 0 ID=cds-WP_038271893.1;Parent=gene-LPH40_RS01815;Dbxref=Genbank:WP_038271893.1;Name=WP_038271893.1;Ontology_term=GO:0005975,GO:0000287,GO:0008966,GO:0016868;gbkey=CDS;gene=glmM;go_function=magnesium ion binding|0000287||IEA,phosphoglucosamine mutase activity|0008966||IEA,intramolecular transferase activity%2C phosphotransferases|0016868||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300396.1;locus_tag=LPH40_RS01815;product=phosphoglucosamine mutase;protein_id=WP_038271893.1;transl_table=11 NZ_CP087685.1 RefSeq gene 443337 444233 . - . ID=gene-LPH40_RS01820;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;locus_tag=LPH40_RS01820;old_locus_tag=LPH40_01820 NZ_CP087685.1 Protein Homology CDS 443337 444233 . - 0 ID=cds-WP_038271891.1;Parent=gene-LPH40_RS01820;Dbxref=Genbank:WP_038271891.1;Name=WP_038271891.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accD;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893968.1;locus_tag=LPH40_RS01820;product=acetyl-CoA carboxylase%2C carboxyltransferase subunit beta;protein_id=WP_038271891.1;transl_table=11 NZ_CP087685.1 RefSeq gene 444459 444752 . - . ID=gene-LPH40_RS01825;Name=LPH40_RS01825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01825;old_locus_tag=LPH40_01825 NZ_CP087685.1 GeneMarkS-2+ CDS 444459 444752 . - 0 ID=cds-WP_152536645.1;Parent=gene-LPH40_RS01825;Dbxref=Genbank:WP_152536645.1;Name=WP_152536645.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01825;product=hypothetical protein;protein_id=WP_152536645.1;transl_table=11 NZ_CP087685.1 RefSeq gene 444761 444997 . - . ID=gene-LPH40_RS01830;Name=LPH40_RS01830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01830;old_locus_tag=LPH40_01830 NZ_CP087685.1 GeneMarkS-2+ CDS 444761 444997 . - 0 ID=cds-WP_038271889.1;Parent=gene-LPH40_RS01830;Dbxref=Genbank:WP_038271889.1;Name=WP_038271889.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01830;product=hypothetical protein;protein_id=WP_038271889.1;transl_table=11 NZ_CP087685.1 RefSeq gene 445650 445928 . + . ID=gene-LPH40_RS01835;Name=LPH40_RS01835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01835;old_locus_tag=LPH40_01835 NZ_CP087685.1 GeneMarkS-2+ CDS 445650 445928 . + 0 ID=cds-WP_162814077.1;Parent=gene-LPH40_RS01835;Dbxref=Genbank:WP_162814077.1;Name=WP_162814077.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01835;product=hypothetical protein;protein_id=WP_162814077.1;transl_table=11 NZ_CP087685.1 RefSeq gene 445947 447107 . - . ID=gene-LPH40_RS01840;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=LPH40_RS01840;old_locus_tag=LPH40_01840 NZ_CP087685.1 Protein Homology CDS 445947 447107 . - 0 ID=cds-WP_171898054.1;Parent=gene-LPH40_RS01840;Dbxref=Genbank:WP_171898054.1;Name=WP_171898054.1;Ontology_term=GO:0006040,GO:0008448;gbkey=CDS;gene=nagA;go_function=N-acetylglucosamine-6-phosphate deacetylase activity|0008448||IEA;go_process=amino sugar metabolic process|0006040||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974066.1;locus_tag=LPH40_RS01840;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_171898054.1;transl_table=11 NZ_CP087685.1 RefSeq gene 447104 448132 . - . ID=gene-LPH40_RS01845;Name=LPH40_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01845;old_locus_tag=LPH40_01845 NZ_CP087685.1 Protein Homology CDS 447104 448132 . - 0 ID=cds-WP_038271975.1;Parent=gene-LPH40_RS01845;Dbxref=Genbank:WP_038271975.1;Name=WP_038271975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005419331.1;locus_tag=LPH40_RS01845;product=SIS domain-containing protein;protein_id=WP_038271975.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 448141 449197 . - . ID=gene-LPH40_RS01850;Name=LPH40_RS01850;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS01850;old_locus_tag=LPH40_01850;pseudo=true NZ_CP087685.1 Protein Homology CDS 448141 449197 . - 0 ID=cds-LPH40_RS01850;Parent=gene-LPH40_RS01850;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850932.1;locus_tag=LPH40_RS01850;product=LacI family DNA-binding transcriptional regulator;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 449201 450490 . - . ID=gene-LPH40_RS01855;Name=gluP;gbkey=Gene;gene=gluP;gene_biotype=protein_coding;locus_tag=LPH40_RS01855;old_locus_tag=LPH40_01855 NZ_CP087685.1 Protein Homology CDS 449201 450490 . - 0 ID=cds-WP_038271879.1;Parent=gene-LPH40_RS01855;Dbxref=Genbank:WP_038271879.1;Name=WP_038271879.1;gbkey=CDS;gene=gluP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850931.1;locus_tag=LPH40_RS01855;product=glucose/galactose MFS transporter;protein_id=WP_038271879.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 450555 450716 . - . ID=gene-LPH40_RS01860;Name=LPH40_RS01860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS01860;old_locus_tag=LPH40_01860;partial=true;pseudo=true;start_range=.,450555 NZ_CP087685.1 Protein Homology CDS 450555 450716 . - 0 ID=cds-LPH40_RS01860;Parent=gene-LPH40_RS01860;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156688.1;locus_tag=LPH40_RS01860;partial=true;product=GntR family transcriptional regulator;pseudo=true;start_range=.,450555;transl_table=11 NZ_CP087685.1 RefSeq gene 451121 452125 . + . ID=gene-LPH40_RS01865;Name=LPH40_RS01865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01865;old_locus_tag=LPH40_01865 NZ_CP087685.1 Protein Homology CDS 451121 452125 . + 0 ID=cds-WP_114867222.1;Parent=gene-LPH40_RS01865;Dbxref=Genbank:WP_114867222.1;Name=WP_114867222.1;Ontology_term=GO:0006096,GO:0004340;gbkey=CDS;go_function=glucokinase activity|0004340||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083735.1;locus_tag=LPH40_RS01865;product=glucokinase;protein_id=WP_114867222.1;transl_table=11 NZ_CP087685.1 RefSeq gene 452149 452520 . - . ID=gene-LPH40_RS01870;Name=LPH40_RS01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01870;old_locus_tag=LPH40_01870 NZ_CP087685.1 Protein Homology CDS 452149 452520 . - 0 ID=cds-WP_230428228.1;Parent=gene-LPH40_RS01870;Dbxref=Genbank:WP_230428228.1;Name=WP_230428228.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607683.1;locus_tag=LPH40_RS01870;product=antibiotic resistance protein VanZ;protein_id=WP_230428228.1;transl_table=11 NZ_CP087685.1 RefSeq gene 452550 453734 . - . ID=gene-LPH40_RS01875;Name=LPH40_RS01875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01875;old_locus_tag=LPH40_01875 NZ_CP087685.1 Protein Homology CDS 452550 453734 . - 0 ID=cds-WP_038272190.1;Parent=gene-LPH40_RS01875;Dbxref=Genbank:WP_038272190.1;Name=WP_038272190.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368204.1;locus_tag=LPH40_RS01875;product=class I SAM-dependent methyltransferase;protein_id=WP_038272190.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 453810 454535 . + . ID=gene-LPH40_RS01880;Name=LPH40_RS01880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS01880;old_locus_tag=LPH40_01880;pseudo=true NZ_CP087685.1 Protein Homology CDS 453810 454535 . + 0 ID=cds-LPH40_RS01880;Parent=gene-LPH40_RS01880;Note=internal stop;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303260.1;locus_tag=LPH40_RS01880;product=pteridine reductase;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 454542 454913 . - . ID=gene-LPH40_RS01885;Name=LPH40_RS01885;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS01885;old_locus_tag=LPH40_01885;pseudo=true NZ_CP087685.1 Protein Homology CDS 454542 454913 . - 0 ID=cds-LPH40_RS01885;Parent=gene-LPH40_RS01885;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089110.1;locus_tag=LPH40_RS01885;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 455046 456542 . - . ID=gene-LPH40_RS01890;Name=LPH40_RS01890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01890;old_locus_tag=LPH40_01890 NZ_CP087685.1 Protein Homology CDS 455046 456542 . - 0 ID=cds-WP_038272192.1;Parent=gene-LPH40_RS01890;Dbxref=Genbank:WP_038272192.1;Name=WP_038272192.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850924.1;locus_tag=LPH40_RS01890;product=response regulator;protein_id=WP_038272192.1;transl_table=11 NZ_CP087685.1 RefSeq gene 457125 457289 . - . ID=gene-LPH40_RS01895;Name=LPH40_RS01895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01895;old_locus_tag=LPH40_01895 NZ_CP087685.1 GeneMarkS-2+ CDS 457125 457289 . - 0 ID=cds-WP_160165209.1;Parent=gene-LPH40_RS01895;Dbxref=Genbank:WP_160165209.1;Name=WP_160165209.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01895;product=hypothetical protein;protein_id=WP_160165209.1;transl_table=11 NZ_CP087685.1 RefSeq gene 458342 458485 . - . ID=gene-LPH40_RS01900;Name=LPH40_RS01900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01900;old_locus_tag=LPH40_01900 NZ_CP087685.1 GeneMarkS-2+ CDS 458342 458485 . - 0 ID=cds-WP_160165210.1;Parent=gene-LPH40_RS01900;Dbxref=Genbank:WP_160165210.1;Name=WP_160165210.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01900;product=hypothetical protein;protein_id=WP_160165210.1;transl_table=11 NZ_CP087685.1 RefSeq gene 458843 459256 . - . ID=gene-LPH40_RS01905;Name=crcB;gbkey=Gene;gene=crcB;gene_biotype=protein_coding;locus_tag=LPH40_RS01905;old_locus_tag=LPH40_01905 NZ_CP087685.1 Protein Homology CDS 458843 459256 . - 0 ID=cds-WP_038272195.1;Parent=gene-LPH40_RS01905;Dbxref=Genbank:WP_038272195.1;Name=WP_038272195.1;gbkey=CDS;gene=crcB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448736.1;locus_tag=LPH40_RS01905;product=fluoride efflux transporter CrcB;protein_id=WP_038272195.1;transl_table=11 NZ_CP087685.1 RefSeq gene 459418 460707 . - . ID=gene-LPH40_RS01910;Name=LPH40_RS01910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01910;old_locus_tag=LPH40_01910 NZ_CP087685.1 Protein Homology CDS 459418 460707 . - 0 ID=cds-WP_201745741.1;Parent=gene-LPH40_RS01910;Dbxref=Genbank:WP_201745741.1;Name=WP_201745741.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507724.1;locus_tag=LPH40_RS01910;product=replication-associated recombination protein A;protein_id=WP_201745741.1;transl_table=11 NZ_CP087685.1 RefSeq gene 460950 461576 . - . ID=gene-LPH40_RS01915;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=LPH40_RS01915;old_locus_tag=LPH40_01915 NZ_CP087685.1 Protein Homology CDS 460950 461576 . - 0 ID=cds-WP_038272259.1;Parent=gene-LPH40_RS01915;Dbxref=Genbank:WP_038272259.1;Name=WP_038272259.1;Ontology_term=GO:0009306,GO:0008320;gbkey=CDS;gene=lolA;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089126.1;locus_tag=LPH40_RS01915;product=outer membrane lipoprotein chaperone LolA;protein_id=WP_038272259.1;transl_table=11 NZ_CP087685.1 RefSeq gene 461639 461881 . - . ID=gene-LPH40_RS01920;Name=LPH40_RS01920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01920;old_locus_tag=LPH40_01920 NZ_CP087685.1 GeneMarkS-2+ CDS 461639 461881 . - 0 ID=cds-WP_038272200.1;Parent=gene-LPH40_RS01920;Dbxref=Genbank:WP_038272200.1;Name=WP_038272200.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01920;product=hypothetical protein;protein_id=WP_038272200.1;transl_table=11 NZ_CP087685.1 RefSeq gene 462898 464772 . - . ID=gene-LPH40_RS01925;Name=LPH40_RS01925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01925;old_locus_tag=LPH40_01925 NZ_CP087685.1 Protein Homology CDS 462898 464772 . - 0 ID=cds-WP_230428290.1;Parent=gene-LPH40_RS01925;Dbxref=Genbank:WP_230428290.1;Name=WP_230428290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850921.1;locus_tag=LPH40_RS01925;product=DUF3857 domain-containing transglutaminase family protein;protein_id=WP_230428290.1;transl_table=11 NZ_CP087685.1 RefSeq gene 464966 467320 . - . ID=gene-LPH40_RS01930;Name=LPH40_RS01930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01930;old_locus_tag=LPH40_01930 NZ_CP087685.1 Protein Homology CDS 464966 467320 . - 0 ID=cds-WP_038272204.1;Parent=gene-LPH40_RS01930;Dbxref=Genbank:WP_038272204.1;Name=WP_038272204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083745.1;locus_tag=LPH40_RS01930;product=DNA translocase FtsK;protein_id=WP_038272204.1;transl_table=11 NZ_CP087685.1 RefSeq gene 467593 468558 . + . ID=gene-LPH40_RS01935;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=LPH40_RS01935;old_locus_tag=LPH40_01935 NZ_CP087685.1 Protein Homology CDS 467593 468558 . + 0 ID=cds-WP_038272206.1;Parent=gene-LPH40_RS01935;Dbxref=Genbank:WP_038272206.1;Name=WP_038272206.1;Ontology_term=GO:0004791;gbkey=CDS;gene=trxB;go_function=thioredoxin-disulfide reductase activity|0004791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006366671.1;locus_tag=LPH40_RS01935;product=thioredoxin-disulfide reductase;protein_id=WP_038272206.1;transl_table=11 NZ_CP087685.1 RefSeq gene 469002 470138 . + . ID=gene-LPH40_RS01940;Name=LPH40_RS01940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01940;old_locus_tag=LPH40_01940 NZ_CP087685.1 Protein Homology CDS 469002 470138 . + 0 ID=cds-WP_038272208.1;Parent=gene-LPH40_RS01940;Dbxref=Genbank:WP_038272208.1;Name=WP_038272208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850918.1;locus_tag=LPH40_RS01940;product=GNAT family N-acetyltransferase;protein_id=WP_038272208.1;transl_table=11 NZ_CP087685.1 RefSeq gene 470149 470880 . + . ID=gene-LPH40_RS01945;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=LPH40_RS01945;old_locus_tag=LPH40_01945 NZ_CP087685.1 Protein Homology CDS 470149 470880 . + 0 ID=cds-WP_038272210.1;Parent=gene-LPH40_RS01945;Dbxref=Genbank:WP_038272210.1;Name=WP_038272210.1;Ontology_term=GO:0006508,GO:0008914;gbkey=CDS;gene=aat;go_function=leucyltransferase activity|0008914||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089137.1;locus_tag=LPH40_RS01945;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=WP_038272210.1;transl_table=11 NZ_CP087685.1 RefSeq gene 470997 471215 . + . ID=gene-LPH40_RS01950;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=LPH40_RS01950;old_locus_tag=LPH40_01950 NZ_CP087685.1 Protein Homology CDS 470997 471215 . + 0 ID=cds-WP_038272213.1;Parent=gene-LPH40_RS01950;Dbxref=Genbank:WP_038272213.1;Name=WP_038272213.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002553999.1;locus_tag=LPH40_RS01950;product=translation initiation factor IF-1;protein_id=WP_038272213.1;transl_table=11 NZ_CP087685.1 RefSeq gene 471546 473822 . - . ID=gene-LPH40_RS01955;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=LPH40_RS01955;old_locus_tag=LPH40_01955 NZ_CP087685.1 Protein Homology CDS 471546 473822 . - 0 ID=cds-WP_038272214.1;Parent=gene-LPH40_RS01955;Dbxref=Genbank:WP_038272214.1;Name=WP_038272214.1;Ontology_term=GO:0006508,GO:0043335,GO:0004176,GO:0009368;gbkey=CDS;gene=clpA;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA;go_process=proteolysis|0006508||IEA,protein unfolding|0043335||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901749.1;locus_tag=LPH40_RS01955;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=WP_038272214.1;transl_table=11 NZ_CP087685.1 RefSeq gene 473951 474271 . - . ID=gene-LPH40_RS01960;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=LPH40_RS01960;old_locus_tag=LPH40_01960 NZ_CP087685.1 Protein Homology CDS 473951 474271 . - 0 ID=cds-WP_038272215.1;Parent=gene-LPH40_RS01960;Dbxref=Genbank:WP_038272215.1;Name=WP_038272215.1;gbkey=CDS;gene=clpS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914463.1;locus_tag=LPH40_RS01960;product=ATP-dependent Clp protease adapter ClpS;protein_id=WP_038272215.1;transl_table=11 NZ_CP087685.1 RefSeq gene 474473 474931 . + . ID=gene-LPH40_RS01965;Name=LPH40_RS01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01965;old_locus_tag=LPH40_01965 NZ_CP087685.1 Protein Homology CDS 474473 474931 . + 0 ID=cds-WP_038272217.1;Parent=gene-LPH40_RS01965;Dbxref=Genbank:WP_038272217.1;Name=WP_038272217.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083752.1;locus_tag=LPH40_RS01965;product=NUDIX hydrolase;protein_id=WP_038272217.1;transl_table=11 NZ_CP087685.1 RefSeq gene 474928 476052 . + . ID=gene-LPH40_RS01970;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;locus_tag=LPH40_RS01970;old_locus_tag=LPH40_01970 NZ_CP087685.1 Protein Homology CDS 474928 476052 . + 0 ID=cds-WP_038272219.1;Parent=gene-LPH40_RS01970;Dbxref=Genbank:WP_038272219.1;Name=WP_038272219.1;Ontology_term=GO:0008033,GO:0016740,GO:0016783;gbkey=CDS;gene=mnmA;go_function=transferase activity|0016740||IEA,sulfurtransferase activity|0016783||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575784.1;locus_tag=LPH40_RS01970;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=WP_038272219.1;transl_table=11 NZ_CP087685.1 RefSeq gene 476065 476679 . + . ID=gene-LPH40_RS01975;Name=hflD;gbkey=Gene;gene=hflD;gene_biotype=protein_coding;locus_tag=LPH40_RS01975;old_locus_tag=LPH40_01975 NZ_CP087685.1 Protein Homology CDS 476065 476679 . + 0 ID=cds-WP_038272221.1;Parent=gene-LPH40_RS01975;Dbxref=Genbank:WP_038272221.1;Name=WP_038272221.1;gbkey=CDS;gene=hflD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893940.1;locus_tag=LPH40_RS01975;product=high frequency lysogenization protein HflD;protein_id=WP_038272221.1;transl_table=11 NZ_CP087685.1 RefSeq gene 477228 477518 . + . ID=gene-LPH40_RS01980;Name=LPH40_RS01980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01980;old_locus_tag=LPH40_01980 NZ_CP087685.1 GeneMarkS-2+ CDS 477228 477518 . + 0 ID=cds-WP_038272223.1;Parent=gene-LPH40_RS01980;Dbxref=Genbank:WP_038272223.1;Name=WP_038272223.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS01980;product=hypothetical protein;protein_id=WP_038272223.1;transl_table=11 NZ_CP087685.1 RefSeq gene 478142 478909 . - . ID=gene-LPH40_RS01985;Name=LPH40_RS01985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01985;old_locus_tag=LPH40_01985 NZ_CP087685.1 Protein Homology CDS 478142 478909 . - 0 ID=cds-WP_038272225.1;Parent=gene-LPH40_RS01985;Dbxref=Genbank:WP_038272225.1;Name=WP_038272225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260285.1;locus_tag=LPH40_RS01985;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_038272225.1;transl_table=11 NZ_CP087685.1 RefSeq gene 478925 479692 . - . ID=gene-LPH40_RS01990;Name=LPH40_RS01990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01990;old_locus_tag=LPH40_01990 NZ_CP087685.1 Protein Homology CDS 478925 479692 . - 0 ID=cds-WP_038272261.1;Parent=gene-LPH40_RS01990;Dbxref=Genbank:WP_038272261.1;Name=WP_038272261.1;Ontology_term=GO:0015035;gbkey=CDS;go_function=protein-disulfide reductase activity|0015035||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850913.1;locus_tag=LPH40_RS01990;product=thiol:disulfide interchange protein DsbA/DsbL;protein_id=WP_038272261.1;transl_table=11 NZ_CP087685.1 RefSeq gene 479773 480429 . - . ID=gene-LPH40_RS01995;Name=LPH40_RS01995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS01995;old_locus_tag=LPH40_01995 NZ_CP087685.1 Protein Homology CDS 479773 480429 . - 0 ID=cds-WP_038272264.1;Parent=gene-LPH40_RS01995;Dbxref=Genbank:WP_038272264.1;Name=WP_038272264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183737.1;locus_tag=LPH40_RS01995;product=thiol:disulfide interchange protein DsbA/DsbL;protein_id=WP_038272264.1;transl_table=11 NZ_CP087685.1 RefSeq gene 480894 481028 . - . ID=gene-LPH40_RS11940;Name=LPH40_RS11940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11940 NZ_CP087685.1 GeneMarkS-2+ CDS 480894 481028 . - 0 ID=cds-WP_267903156.1;Parent=gene-LPH40_RS11940;Dbxref=Genbank:WP_267903156.1;Name=WP_267903156.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11940;product=hypothetical protein;protein_id=WP_267903156.1;transl_table=11 NZ_CP087685.1 RefSeq gene 481413 482024 . + . ID=gene-LPH40_RS02000;Name=yihA;gbkey=Gene;gene=yihA;gene_biotype=protein_coding;locus_tag=LPH40_RS02000;old_locus_tag=LPH40_02000 NZ_CP087685.1 Protein Homology CDS 481413 482024 . + 0 ID=cds-WP_038272231.1;Parent=gene-LPH40_RS02000;Dbxref=Genbank:WP_038272231.1;Name=WP_038272231.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=yihA;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299877.1;locus_tag=LPH40_RS02000;product=ribosome biogenesis GTP-binding protein YihA/YsxC;protein_id=WP_038272231.1;transl_table=11 NZ_CP087685.1 RefSeq gene 482225 483589 . + . ID=gene-LPH40_RS02005;Name=LPH40_RS02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02005;old_locus_tag=LPH40_02005 NZ_CP087685.1 Protein Homology CDS 482225 483589 . + 0 ID=cds-WP_038272234.1;Parent=gene-LPH40_RS02005;Dbxref=Genbank:WP_038272234.1;Name=WP_038272234.1;Ontology_term=GO:0006750,GO:0004357;gbkey=CDS;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477658.1;locus_tag=LPH40_RS02005;product=glutamate--cysteine ligase;protein_id=WP_038272234.1;transl_table=11 NZ_CP087685.1 RefSeq gene 483884 484021 . - . ID=gene-LPH40_RS02010;Name=LPH40_RS02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02010;old_locus_tag=LPH40_02010 NZ_CP087685.1 GeneMarkS-2+ CDS 483884 484021 . - 0 ID=cds-WP_160165211.1;Parent=gene-LPH40_RS02010;Dbxref=Genbank:WP_160165211.1;Name=WP_160165211.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02010;product=hypothetical protein;protein_id=WP_160165211.1;transl_table=11 NZ_CP087685.1 RefSeq gene 484030 485265 . - . ID=gene-LPH40_RS02015;Name=LPH40_RS02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02015;old_locus_tag=LPH40_02015 NZ_CP087685.1 Protein Homology CDS 484030 485265 . - 0 ID=cds-WP_038272236.1;Parent=gene-LPH40_RS02015;Dbxref=Genbank:WP_038272236.1;Name=WP_038272236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577885.1;locus_tag=LPH40_RS02015;product=acetylornithine transaminase;protein_id=WP_038272236.1;transl_table=11 NZ_CP087685.1 RefSeq gene 485333 486229 . + . ID=gene-LPH40_RS02020;Name=LPH40_RS02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02020;old_locus_tag=LPH40_02020 NZ_CP087685.1 Protein Homology CDS 485333 486229 . + 0 ID=cds-WP_038272238.1;Parent=gene-LPH40_RS02020;Dbxref=Genbank:WP_038272238.1;Name=WP_038272238.1;Ontology_term=GO:0006811,GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=ion transport|0006811||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083762.1;locus_tag=LPH40_RS02020;product=ion transporter;protein_id=WP_038272238.1;transl_table=11 NZ_CP087685.1 RefSeq gene 486490 487464 . + . ID=gene-LPH40_RS02025;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=LPH40_RS02025;old_locus_tag=LPH40_02025 NZ_CP087685.1 Protein Homology CDS 486490 487464 . + 0 ID=cds-WP_038272241.1;Parent=gene-LPH40_RS02025;Dbxref=Genbank:WP_038272241.1;Name=WP_038272241.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerD;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932805.1;locus_tag=LPH40_RS02025;product=site-specific tyrosine recombinase XerD;protein_id=WP_038272241.1;transl_table=11 NZ_CP087685.1 RefSeq gene 487596 488384 . + . ID=gene-LPH40_RS02030;Name=LPH40_RS02030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02030;old_locus_tag=LPH40_02030 NZ_CP087685.1 Protein Homology CDS 487596 488384 . + 0 ID=cds-WP_038272243.1;Parent=gene-LPH40_RS02030;Dbxref=Genbank:WP_038272243.1;Name=WP_038272243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850905.1;locus_tag=LPH40_RS02030;product=DsbC family protein;protein_id=WP_038272243.1;transl_table=11 NZ_CP087685.1 RefSeq gene 488581 492555 . + . ID=gene-LPH40_RS02035;Name=purL;gbkey=Gene;gene=purL;gene_biotype=protein_coding;locus_tag=LPH40_RS02035;old_locus_tag=LPH40_02035 NZ_CP087685.1 Protein Homology CDS 488581 492555 . + 0 ID=cds-WP_038272267.1;Parent=gene-LPH40_RS02035;Dbxref=Genbank:WP_038272267.1;Name=WP_038272267.1;Ontology_term=GO:0006189,GO:0004642;gbkey=CDS;gene=purL;go_function=phosphoribosylformylglycinamidine synthase activity|0004642||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367790.1;locus_tag=LPH40_RS02035;product=phosphoribosylformylglycinamidine synthase;protein_id=WP_038272267.1;transl_table=11 NZ_CP087685.1 RefSeq gene 493458 493766 . - . ID=gene-LPH40_RS02040;Name=LPH40_RS02040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02040;old_locus_tag=LPH40_02040 NZ_CP087685.1 Protein Homology CDS 493458 493766 . - 0 ID=cds-WP_038272244.1;Parent=gene-LPH40_RS02040;Dbxref=Genbank:WP_038272244.1;Name=WP_038272244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097729.1;locus_tag=LPH40_RS02040;product=hypothetical protein;protein_id=WP_038272244.1;transl_table=11 NZ_CP087685.1 RefSeq gene 493763 495040 . - . ID=gene-LPH40_RS02045;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=LPH40_RS02045;old_locus_tag=LPH40_02045 NZ_CP087685.1 Protein Homology CDS 493763 495040 . - 0 ID=cds-WP_038272246.1;Parent=gene-LPH40_RS02045;Dbxref=Genbank:WP_038272246.1;Name=WP_038272246.1;Ontology_term=GO:0009252,GO:0008760;gbkey=CDS;gene=murA;go_function=UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity|0008760||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437778.1;locus_tag=LPH40_RS02045;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_038272246.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 495098 495362 . - . ID=gene-LPH40_RS02050;Name=LPH40_RS02050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS02050;old_locus_tag=LPH40_02050;pseudo=true NZ_CP087685.1 Protein Homology CDS 495098 495362 . - 0 ID=cds-LPH40_RS02050;Parent=gene-LPH40_RS02050;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407890.1;locus_tag=LPH40_RS02050;product=BolA/IbaG family iron-sulfur metabolism protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 495387 496388 . + . ID=gene-LPH40_RS02055;Name=LPH40_RS02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02055;old_locus_tag=LPH40_02055 NZ_CP087685.1 Protein Homology CDS 495387 496388 . + 0 ID=cds-WP_038272251.1;Parent=gene-LPH40_RS02055;Dbxref=Genbank:WP_038272251.1;Name=WP_038272251.1;Ontology_term=GO:0005975,GO:0016853;gbkey=CDS;go_function=isomerase activity|0016853||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993233.1;locus_tag=LPH40_RS02055;product=KpsF/GutQ family sugar-phosphate isomerase;protein_id=WP_038272251.1;transl_table=11 NZ_CP087685.1 RefSeq gene 496408 496956 . + . ID=gene-LPH40_RS02060;Name=LPH40_RS02060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02060;old_locus_tag=LPH40_02060 NZ_CP087685.1 Protein Homology CDS 496408 496956 . + 0 ID=cds-WP_038272254.1;Parent=gene-LPH40_RS02060;Dbxref=Genbank:WP_038272254.1;Name=WP_038272254.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508473.1;locus_tag=LPH40_RS02060;product=HAD family hydrolase;protein_id=WP_038272254.1;transl_table=11 NZ_CP087685.1 RefSeq gene 496953 497522 . + . ID=gene-LPH40_RS02065;Name=lptC;gbkey=Gene;gene=lptC;gene_biotype=protein_coding;locus_tag=LPH40_RS02065;old_locus_tag=LPH40_02065 NZ_CP087685.1 Protein Homology CDS 496953 497522 . + 0 ID=cds-WP_114867169.1;Parent=gene-LPH40_RS02065;Dbxref=Genbank:WP_114867169.1;Name=WP_114867169.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptC;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850898.1;locus_tag=LPH40_RS02065;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_114867169.1;transl_table=11 NZ_CP087685.1 RefSeq gene 497500 498033 . + . ID=gene-LPH40_RS02070;Name=lptA;gbkey=Gene;gene=lptA;gene_biotype=protein_coding;locus_tag=LPH40_RS02070;old_locus_tag=LPH40_02070 NZ_CP087685.1 Protein Homology CDS 497500 498033 . + 0 ID=cds-WP_038271458.1;Parent=gene-LPH40_RS02070;Dbxref=Genbank:WP_038271458.1;Name=WP_038271458.1;Ontology_term=GO:0015920,GO:0001530,GO:0030288,GO:0043190;gbkey=CDS;gene=lptA;go_component=outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide binding|0001530||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893912.1;locus_tag=LPH40_RS02070;product=lipopolysaccharide transport periplasmic protein LptA;protein_id=WP_038271458.1;transl_table=11 NZ_CP087685.1 RefSeq gene 498033 498755 . + . ID=gene-LPH40_RS02075;Name=lptB;gbkey=Gene;gene=lptB;gene_biotype=protein_coding;locus_tag=LPH40_RS02075;old_locus_tag=LPH40_02075 NZ_CP087685.1 Protein Homology CDS 498033 498755 . + 0 ID=cds-WP_038271459.1;Parent=gene-LPH40_RS02075;Dbxref=Genbank:WP_038271459.1;Name=WP_038271459.1;Ontology_term=GO:0015920,GO:0015221,GO:0042626,GO:0009898,GO:0043190;gbkey=CDS;gene=lptB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913374.1;locus_tag=LPH40_RS02075;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_038271459.1;transl_table=11 NZ_CP087685.1 RefSeq gene 498802 500178 . + . ID=gene-LPH40_RS02080;Name=LPH40_RS02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02080;old_locus_tag=LPH40_02080 NZ_CP087685.1 Protein Homology CDS 498802 500178 . + 0 ID=cds-WP_038271528.1;Parent=gene-LPH40_RS02080;Dbxref=Genbank:WP_038271528.1;Name=WP_038271528.1;Ontology_term=GO:0006352,GO:0001216,GO:0003677,GO:0016987;gbkey=CDS;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019185406.1;locus_tag=LPH40_RS02080;product=RNA polymerase factor sigma-54;protein_id=WP_038271528.1;transl_table=11 NZ_CP087685.1 RefSeq gene 500284 500601 . + . ID=gene-LPH40_RS02085;Name=raiA;gbkey=Gene;gene=raiA;gene_biotype=protein_coding;locus_tag=LPH40_RS02085;old_locus_tag=LPH40_02085 NZ_CP087685.1 Protein Homology CDS 500284 500601 . + 0 ID=cds-WP_038271460.1;Parent=gene-LPH40_RS02085;Dbxref=Genbank:WP_038271460.1;Name=WP_038271460.1;Ontology_term=GO:0009386,GO:0045182,GO:0005840,GO:0022626;gbkey=CDS;gene=raiA;go_component=ribosome|0005840||IEA,cytosolic ribosome|0022626||IEA;go_function=translation regulator activity|0045182||IEA;go_process=translational attenuation|0009386||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083778.1;locus_tag=LPH40_RS02085;product=ribosome-associated translation inhibitor RaiA;protein_id=WP_038271460.1;transl_table=11 NZ_CP087685.1 RefSeq gene 500904 501854 . + . ID=gene-LPH40_RS02090;Name=hprK;gbkey=Gene;gene=hprK;gene_biotype=protein_coding;locus_tag=LPH40_RS02090;old_locus_tag=LPH40_02090 NZ_CP087685.1 Protein Homology CDS 500904 501854 . + 0 ID=cds-WP_114867170.1;Parent=gene-LPH40_RS02090;Dbxref=Genbank:WP_114867170.1;Name=WP_114867170.1;Ontology_term=GO:0009401,GO:0004674,GO:0016791;gbkey=CDS;gene=hprK;go_function=protein serine/threonine kinase activity|0004674||IEA,phosphatase activity|0016791||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004425835.1;locus_tag=LPH40_RS02090;product=HPr(Ser) kinase/phosphatase;protein_id=WP_114867170.1;transl_table=11 NZ_CP087685.1 RefSeq gene 501851 502723 . + . ID=gene-LPH40_RS02095;Name=rapZ;gbkey=Gene;gene=rapZ;gene_biotype=protein_coding;locus_tag=LPH40_RS02095;old_locus_tag=LPH40_02095 NZ_CP087685.1 Protein Homology CDS 501851 502723 . + 0 ID=cds-WP_038271462.1;Parent=gene-LPH40_RS02095;Dbxref=Genbank:WP_038271462.1;Name=WP_038271462.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rapZ;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850895.1;locus_tag=LPH40_RS02095;product=RNase adapter RapZ;protein_id=WP_038271462.1;transl_table=11 NZ_CP087685.1 RefSeq gene 503709 504101 . + . ID=gene-LPH40_RS02100;Name=LPH40_RS02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02100;old_locus_tag=LPH40_02100 NZ_CP087685.1 Protein Homology CDS 503709 504101 . + 0 ID=cds-WP_038271463.1;Parent=gene-LPH40_RS02100;Dbxref=Genbank:WP_038271463.1;Name=WP_038271463.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154797.1;locus_tag=LPH40_RS02100;product=PTS fructose IIA component family protein;protein_id=WP_038271463.1;transl_table=11 NZ_CP087685.1 RefSeq gene 504094 504363 . + . ID=gene-LPH40_RS02105;Name=LPH40_RS02105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02105;old_locus_tag=LPH40_02105 NZ_CP087685.1 Protein Homology CDS 504094 504363 . + 0 ID=cds-WP_038271464.1;Parent=gene-LPH40_RS02105;Dbxref=Genbank:WP_038271464.1;Name=WP_038271464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237443.1;locus_tag=LPH40_RS02105;product=HPr family phosphocarrier protein;protein_id=WP_038271464.1;transl_table=11 NZ_CP087685.1 RefSeq gene 504404 506131 . + . ID=gene-LPH40_RS02110;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=LPH40_RS02110;old_locus_tag=LPH40_02110 NZ_CP087685.1 Protein Homology CDS 504404 506131 . + 0 ID=cds-WP_038271465.1;Parent=gene-LPH40_RS02110;Dbxref=Genbank:WP_038271465.1;Name=WP_038271465.1;Ontology_term=GO:0006808,GO:0009401,GO:0008965;gbkey=CDS;gene=ptsP;go_function=phosphoenolpyruvate-protein phosphotransferase activity|0008965||IEA;go_process=regulation of nitrogen utilization|0006808||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097727.1;locus_tag=LPH40_RS02110;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_038271465.1;transl_table=11 NZ_CP087685.1 RefSeq gene 506242 507603 . + . ID=gene-LPH40_RS02115;Name=mgtE;gbkey=Gene;gene=mgtE;gene_biotype=protein_coding;locus_tag=LPH40_RS02115;old_locus_tag=LPH40_02115 NZ_CP087685.1 Protein Homology CDS 506242 507603 . + 0 ID=cds-WP_038271466.1;Parent=gene-LPH40_RS02115;Dbxref=Genbank:WP_038271466.1;Name=WP_038271466.1;Ontology_term=GO:0015693,GO:0015095;gbkey=CDS;gene=mgtE;go_function=magnesium ion transmembrane transporter activity|0015095||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008266103.1;locus_tag=LPH40_RS02115;product=magnesium transporter;protein_id=WP_038271466.1;transl_table=11 NZ_CP087685.1 RefSeq gene 508108 508635 . + . ID=gene-LPH40_RS02120;Name=gloA;gbkey=Gene;gene=gloA;gene_biotype=protein_coding;locus_tag=LPH40_RS02120;old_locus_tag=LPH40_02120 NZ_CP087685.1 Protein Homology CDS 508108 508635 . + 0 ID=cds-WP_051482336.1;Parent=gene-LPH40_RS02120;Dbxref=Genbank:WP_051482336.1;Name=WP_051482336.1;Ontology_term=GO:0005975,GO:0051596,GO:0004462;gbkey=CDS;gene=gloA;go_function=lactoylglutathione lyase activity|0004462||IEA;go_process=carbohydrate metabolic process|0005975||IEA,methylglyoxal catabolic process|0051596||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089226.1;locus_tag=LPH40_RS02120;product=lactoylglutathione lyase;protein_id=WP_051482336.1;transl_table=11 NZ_CP087685.1 RefSeq gene 509318 510508 . - . ID=gene-LPH40_RS02125;Name=LPH40_RS02125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02125;old_locus_tag=LPH40_02125 NZ_CP087685.1 Protein Homology CDS 509318 510508 . - 0 ID=cds-WP_051482339.1;Parent=gene-LPH40_RS02125;Dbxref=Genbank:WP_051482339.1;Name=WP_051482339.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089227.1;locus_tag=LPH40_RS02125;product=cation:proton antiporter;protein_id=WP_051482339.1;transl_table=11 NZ_CP087685.1 RefSeq gene 511733 512644 . - . ID=gene-LPH40_RS02130;Name=LPH40_RS02130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02130;old_locus_tag=LPH40_02130 NZ_CP087685.1 Protein Homology CDS 511733 512644 . - 0 ID=cds-WP_038271469.1;Parent=gene-LPH40_RS02130;Dbxref=Genbank:WP_038271469.1;Name=WP_038271469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850889.1;locus_tag=LPH40_RS02130;product=class I SAM-dependent methyltransferase;protein_id=WP_038271469.1;transl_table=11 NZ_CP087685.1 RefSeq gene 512960 513190 . + . ID=gene-LPH40_RS02135;Name=LPH40_RS02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02135;old_locus_tag=LPH40_02135 NZ_CP087685.1 Protein Homology CDS 512960 513190 . + 0 ID=cds-WP_230428292.1;Parent=gene-LPH40_RS02135;Dbxref=Genbank:WP_230428292.1;Name=WP_230428292.1;Ontology_term=GO:0009372,GO:0017148,GO:0044010;gbkey=CDS;go_process=quorum sensing|0009372||IEA,negative regulation of translation|0017148||IEA,single-species biofilm formation|0044010||IEA;inference=COORDINATES: protein motif:HMM:NF027059.2;locus_tag=LPH40_RS02135;product=type II toxin-antitoxin system MqsR family toxin;protein_id=WP_230428292.1;transl_table=11 NZ_CP087685.1 RefSeq gene 514833 515003 . + . ID=gene-LPH40_RS02140;Name=LPH40_RS02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02140;old_locus_tag=LPH40_02140 NZ_CP087685.1 GeneMarkS-2+ CDS 514833 515003 . + 0 ID=cds-WP_160165189.1;Parent=gene-LPH40_RS02140;Dbxref=Genbank:WP_160165189.1;Name=WP_160165189.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02140;product=hypothetical protein;protein_id=WP_160165189.1;transl_table=11 NZ_CP087685.1 RefSeq gene 515303 515539 . + . ID=gene-LPH40_RS02145;Name=LPH40_RS02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02145;old_locus_tag=LPH40_02145 NZ_CP087685.1 GeneMarkS-2+ CDS 515303 515539 . + 0 ID=cds-WP_038271471.1;Parent=gene-LPH40_RS02145;Dbxref=Genbank:WP_038271471.1;Name=WP_038271471.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02145;product=hypothetical protein;protein_id=WP_038271471.1;transl_table=11 NZ_CP087685.1 RefSeq gene 516330 516995 . + . ID=gene-LPH40_RS02150;Name=LPH40_RS02150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02150;old_locus_tag=LPH40_02150 NZ_CP087685.1 GeneMarkS-2+ CDS 516330 516995 . + 0 ID=cds-WP_051482337.1;Parent=gene-LPH40_RS02150;Dbxref=Genbank:WP_051482337.1;Name=WP_051482337.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02150;product=hypothetical protein;protein_id=WP_051482337.1;transl_table=11 NZ_CP087685.1 RefSeq gene 517062 517643 . + . ID=gene-LPH40_RS02155;Name=LPH40_RS02155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02155;old_locus_tag=LPH40_02155 NZ_CP087685.1 Protein Homology CDS 517062 517643 . + 0 ID=cds-WP_038271473.1;Parent=gene-LPH40_RS02155;Dbxref=Genbank:WP_038271473.1;Name=WP_038271473.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019464587.1;locus_tag=LPH40_RS02155;product=sigma-70 family RNA polymerase sigma factor;protein_id=WP_038271473.1;transl_table=11 NZ_CP087685.1 RefSeq gene 517640 518293 . + . ID=gene-LPH40_RS02160;Name=LPH40_RS02160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02160;old_locus_tag=LPH40_02160 NZ_CP087685.1 Protein Homology CDS 517640 518293 . + 0 ID=cds-WP_038271474.1;Parent=gene-LPH40_RS02160;Dbxref=Genbank:WP_038271474.1;Name=WP_038271474.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169443.1;locus_tag=LPH40_RS02160;product=hypothetical protein;protein_id=WP_038271474.1;transl_table=11 NZ_CP087685.1 RefSeq gene 518353 519633 . + . ID=gene-LPH40_RS02165;Name=LPH40_RS02165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02165;old_locus_tag=LPH40_02165 NZ_CP087685.1 Protein Homology CDS 518353 519633 . + 0 ID=cds-WP_230428293.1;Parent=gene-LPH40_RS02165;Dbxref=Genbank:WP_230428293.1;Name=WP_230428293.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438591.1;locus_tag=LPH40_RS02165;product=S8 family serine peptidase;protein_id=WP_230428293.1;transl_table=11 NZ_CP087685.1 RefSeq gene 520332 520814 . - . ID=gene-LPH40_RS02170;Name=LPH40_RS02170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02170;old_locus_tag=LPH40_02170 NZ_CP087685.1 Protein Homology CDS 520332 520814 . - 0 ID=cds-WP_038271482.1;Parent=gene-LPH40_RS02170;Dbxref=Genbank:WP_038271482.1;Name=WP_038271482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157214.1;locus_tag=LPH40_RS02170;product=single-stranded DNA-binding protein;protein_id=WP_038271482.1;transl_table=11 NZ_CP087685.1 RefSeq gene 521061 522059 . + . ID=gene-LPH40_RS02175;Name=LPH40_RS02175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02175;old_locus_tag=LPH40_02175 NZ_CP087685.1 Protein Homology CDS 521061 522059 . + 0 ID=cds-WP_038271484.1;Parent=gene-LPH40_RS02175;Dbxref=Genbank:WP_038271484.1;Name=WP_038271484.1;Ontology_term=GO:0008299;gbkey=CDS;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966188.1;locus_tag=LPH40_RS02175;product=polyprenyl synthetase family protein;protein_id=WP_038271484.1;transl_table=11 NZ_CP087685.1 RefSeq gene 522953 523897 . + . ID=gene-LPH40_RS02180;Name=cyoA;gbkey=Gene;gene=cyoA;gene_biotype=protein_coding;locus_tag=LPH40_RS02180;old_locus_tag=LPH40_02180 NZ_CP087685.1 Protein Homology CDS 522953 523897 . + 0 ID=cds-WP_038271486.1;Parent=gene-LPH40_RS02180;Dbxref=Genbank:WP_038271486.1;Name=WP_038271486.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoA;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300511.1;locus_tag=LPH40_RS02180;product=ubiquinol oxidase subunit II;protein_id=WP_038271486.1;transl_table=11 NZ_CP087685.1 RefSeq gene 523897 525894 . + . ID=gene-LPH40_RS02185;Name=cyoB;gbkey=Gene;gene=cyoB;gene_biotype=protein_coding;locus_tag=LPH40_RS02185;old_locus_tag=LPH40_02185 NZ_CP087685.1 Protein Homology CDS 523897 525894 . + 0 ID=cds-WP_038271488.1;Parent=gene-LPH40_RS02185;Dbxref=Genbank:WP_038271488.1;Name=WP_038271488.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoB;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472398.1;locus_tag=LPH40_RS02185;product=cytochrome o ubiquinol oxidase subunit I;protein_id=WP_038271488.1;transl_table=11 NZ_CP087685.1 RefSeq gene 525891 526526 . + . ID=gene-LPH40_RS02190;Name=cyoC;gbkey=Gene;gene=cyoC;gene_biotype=protein_coding;locus_tag=LPH40_RS02190;old_locus_tag=LPH40_02190 NZ_CP087685.1 Protein Homology CDS 525891 526526 . + 0 ID=cds-WP_171898089.1;Parent=gene-LPH40_RS02190;Dbxref=Genbank:WP_171898089.1;Name=WP_171898089.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoC;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851535.1;locus_tag=LPH40_RS02190;product=cytochrome o ubiquinol oxidase subunit III;protein_id=WP_171898089.1;transl_table=11 NZ_CP087685.1 RefSeq gene 526526 526867 . + . ID=gene-LPH40_RS02195;Name=cyoD;gbkey=Gene;gene=cyoD;gene_biotype=protein_coding;locus_tag=LPH40_RS02195;old_locus_tag=LPH40_02195 NZ_CP087685.1 Protein Homology CDS 526526 526867 . + 0 ID=cds-WP_038271490.1;Parent=gene-LPH40_RS02195;Dbxref=Genbank:WP_038271490.1;Name=WP_038271490.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoD;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156584.1;locus_tag=LPH40_RS02195;product=cytochrome o ubiquinol oxidase subunit IV;protein_id=WP_038271490.1;transl_table=11 NZ_CP087685.1 RefSeq gene 527884 530805 . - . ID=gene-LPH40_RS02200;Name=gcvP;gbkey=Gene;gene=gcvP;gene_biotype=protein_coding;locus_tag=LPH40_RS02200;old_locus_tag=LPH40_02200 NZ_CP087685.1 Protein Homology CDS 527884 530805 . - 0 ID=cds-WP_038271491.1;Parent=gene-LPH40_RS02200;Dbxref=Genbank:WP_038271491.1;Name=WP_038271491.1;Ontology_term=GO:0019464,GO:0004375;gbkey=CDS;gene=gcvP;go_function=glycine dehydrogenase (decarboxylating) activity|0004375||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994594.1;locus_tag=LPH40_RS02200;product=aminomethyl-transferring glycine dehydrogenase;protein_id=WP_038271491.1;transl_table=11 NZ_CP087685.1 RefSeq gene 531331 532818 . + . ID=gene-LPH40_RS02205;Name=LPH40_RS02205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02205;old_locus_tag=LPH40_02205 NZ_CP087685.1 Protein Homology CDS 531331 532818 . + 0 ID=cds-WP_230428229.1;Parent=gene-LPH40_RS02205;Dbxref=Genbank:WP_230428229.1;Name=WP_230428229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913680.1;locus_tag=LPH40_RS02205;product=PhoPQ-activated pathogenicity-related family protein;protein_id=WP_230428229.1;transl_table=11 NZ_CP087685.1 RefSeq gene 532815 537239 . - . ID=gene-LPH40_RS02210;Name=LPH40_RS02210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02210;old_locus_tag=LPH40_02210 NZ_CP087685.1 Protein Homology CDS 532815 537239 . - 0 ID=cds-WP_038271493.1;Parent=gene-LPH40_RS02210;Dbxref=Genbank:WP_038271493.1;Name=WP_038271493.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090678.1;locus_tag=LPH40_RS02210;product=DUF3418 domain-containing protein;protein_id=WP_038271493.1;transl_table=11 NZ_CP087685.1 RefSeq gene 537323 537865 . + . ID=gene-LPH40_RS02215;Name=LPH40_RS02215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02215;old_locus_tag=LPH40_02215 NZ_CP087685.1 Protein Homology CDS 537323 537865 . + 0 ID=cds-WP_038271495.1;Parent=gene-LPH40_RS02215;Dbxref=Genbank:WP_038271495.1;Name=WP_038271495.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364158.1;locus_tag=LPH40_RS02215;product=DNA starvation/stationary phase protection protein;protein_id=WP_038271495.1;transl_table=11 NZ_CP087685.1 RefSeq gene 538070 539866 . + . ID=gene-LPH40_RS02220;Name=recQ;gbkey=Gene;gene=recQ;gene_biotype=protein_coding;locus_tag=LPH40_RS02220;old_locus_tag=LPH40_02220 NZ_CP087685.1 Protein Homology CDS 538070 539866 . + 0 ID=cds-WP_038271497.1;Parent=gene-LPH40_RS02220;Dbxref=Genbank:WP_038271497.1;Name=WP_038271497.1;Ontology_term=GO:0006310,GO:0003678;gbkey=CDS;gene=recQ;go_function=DNA helicase activity|0003678||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155540.1;locus_tag=LPH40_RS02220;product=DNA helicase RecQ;protein_id=WP_038271497.1;transl_table=11 NZ_CP087685.1 RefSeq gene 539992 540459 . + . ID=gene-LPH40_RS02225;Name=LPH40_RS02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02225;old_locus_tag=LPH40_02225 NZ_CP087685.1 Protein Homology CDS 539992 540459 . + 0 ID=cds-WP_038271498.1;Parent=gene-LPH40_RS02225;Dbxref=Genbank:WP_038271498.1;Name=WP_038271498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852759.1;locus_tag=LPH40_RS02225;product=hypothetical protein;protein_id=WP_038271498.1;transl_table=11 NZ_CP087685.1 RefSeq gene 540623 540982 . - . ID=gene-LPH40_RS02230;Name=LPH40_RS02230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02230;old_locus_tag=LPH40_02230 NZ_CP087685.1 GeneMarkS-2+ CDS 540623 540982 . - 0 ID=cds-WP_152536628.1;Parent=gene-LPH40_RS02230;Dbxref=Genbank:WP_152536628.1;Name=WP_152536628.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02230;product=hypothetical protein;protein_id=WP_152536628.1;transl_table=11 NZ_CP087685.1 RefSeq gene 540981 541145 . + . ID=gene-LPH40_RS02235;Name=LPH40_RS02235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02235;old_locus_tag=LPH40_02235 NZ_CP087685.1 GeneMarkS-2+ CDS 540981 541145 . + 0 ID=cds-WP_160199308.1;Parent=gene-LPH40_RS02235;Dbxref=Genbank:WP_160199308.1;Name=WP_160199308.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02235;product=hypothetical protein;protein_id=WP_160199308.1;transl_table=11 NZ_CP087685.1 RefSeq gene 541175 542140 . - . ID=gene-LPH40_RS02240;Name=LPH40_RS02240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02240;old_locus_tag=LPH40_02240 NZ_CP087685.1 Protein Homology CDS 541175 542140 . - 0 ID=cds-WP_038271502.1;Parent=gene-LPH40_RS02240;Dbxref=Genbank:WP_038271502.1;Name=WP_038271502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337749.1;locus_tag=LPH40_RS02240;product=LLM class flavin-dependent oxidoreductase;protein_id=WP_038271502.1;transl_table=11 NZ_CP087685.1 RefSeq gene 542330 543724 . + . ID=gene-LPH40_RS02245;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=LPH40_RS02245;old_locus_tag=LPH40_02245 NZ_CP087685.1 Protein Homology CDS 542330 543724 . + 0 ID=cds-WP_038271504.1;Parent=gene-LPH40_RS02245;Dbxref=Genbank:WP_038271504.1;Name=WP_038271504.1;Ontology_term=GO:0006281,GO:0005524;gbkey=CDS;gene=radA;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002807912.1;locus_tag=LPH40_RS02245;product=DNA repair protein RadA;protein_id=WP_038271504.1;transl_table=11 NZ_CP087685.1 RefSeq gene 543882 544022 . + . ID=gene-LPH40_RS02250;Name=LPH40_RS02250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02250;old_locus_tag=LPH40_02250 NZ_CP087685.1 GeneMarkS-2+ CDS 543882 544022 . + 0 ID=cds-WP_171898055.1;Parent=gene-LPH40_RS02250;Dbxref=Genbank:WP_171898055.1;Name=WP_171898055.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02250;product=hypothetical protein;protein_id=WP_171898055.1;transl_table=11 NZ_CP087685.1 RefSeq gene 544052 544453 . - . ID=gene-LPH40_RS02255;Name=LPH40_RS02255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02255;old_locus_tag=LPH40_02255 NZ_CP087685.1 GeneMarkS-2+ CDS 544052 544453 . - 0 ID=cds-WP_038271505.1;Parent=gene-LPH40_RS02255;Dbxref=Genbank:WP_038271505.1;Name=WP_038271505.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02255;product=hypothetical protein;protein_id=WP_038271505.1;transl_table=11 NZ_CP087685.1 RefSeq gene 545198 546004 . - . ID=gene-LPH40_RS02260;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;locus_tag=LPH40_RS02260;old_locus_tag=LPH40_02260 NZ_CP087685.1 Protein Homology CDS 545198 546004 . - 0 ID=cds-WP_038271506.1;Parent=gene-LPH40_RS02260;Dbxref=Genbank:WP_038271506.1;Name=WP_038271506.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpA;go_function=tryptophan synthase activity|0004834||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090667.1;locus_tag=LPH40_RS02260;product=tryptophan synthase subunit alpha;protein_id=WP_038271506.1;transl_table=11 NZ_CP087685.1 RefSeq gene 546133 547347 . - . ID=gene-LPH40_RS02265;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;locus_tag=LPH40_RS02265;old_locus_tag=LPH40_02265 NZ_CP087685.1 Protein Homology CDS 546133 547347 . - 0 ID=cds-WP_038271531.1;Parent=gene-LPH40_RS02265;Dbxref=Genbank:WP_038271531.1;Name=WP_038271531.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpB;go_function=tryptophan synthase activity|0004834||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893879.1;locus_tag=LPH40_RS02265;product=tryptophan synthase subunit beta;protein_id=WP_038271531.1;transl_table=11 NZ_CP087685.1 RefSeq gene 547788 548450 . - . ID=gene-LPH40_RS02270;Name=LPH40_RS02270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02270;old_locus_tag=LPH40_02270 NZ_CP087685.1 Protein Homology CDS 547788 548450 . - 0 ID=cds-WP_038271508.1;Parent=gene-LPH40_RS02270;Dbxref=Genbank:WP_038271508.1;Name=WP_038271508.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006381350.1;locus_tag=LPH40_RS02270;product=phosphoribosylanthranilate isomerase;protein_id=WP_038271508.1;transl_table=11 NZ_CP087685.1 RefSeq gene 548447 549217 . - . ID=gene-LPH40_RS02275;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;locus_tag=LPH40_RS02275;old_locus_tag=LPH40_02275 NZ_CP087685.1 Protein Homology CDS 548447 549217 . - 0 ID=cds-WP_038271509.1;Parent=gene-LPH40_RS02275;Dbxref=Genbank:WP_038271509.1;Name=WP_038271509.1;Ontology_term=GO:0006400,GO:0009982;gbkey=CDS;gene=truA;go_function=pseudouridine synthase activity|0009982||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005417971.1;locus_tag=LPH40_RS02275;product=tRNA pseudouridine(38-40) synthase TruA;protein_id=WP_038271509.1;transl_table=11 NZ_CP087685.1 RefSeq gene 549262 551034 . - . ID=gene-LPH40_RS02280;Name=LPH40_RS02280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02280;old_locus_tag=LPH40_02280 NZ_CP087685.1 Protein Homology CDS 549262 551034 . - 0 ID=cds-WP_038271510.1;Parent=gene-LPH40_RS02280;Dbxref=Genbank:WP_038271510.1;Name=WP_038271510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083830.1;locus_tag=LPH40_RS02280;product=FimV family protein;protein_id=WP_038271510.1;transl_table=11 NZ_CP087685.1 RefSeq gene 551192 552226 . - . ID=gene-LPH40_RS02285;Name=LPH40_RS02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02285;old_locus_tag=LPH40_02285 NZ_CP087685.1 Protein Homology CDS 551192 552226 . - 0 ID=cds-WP_038271511.1;Parent=gene-LPH40_RS02285;Dbxref=Genbank:WP_038271511.1;Name=WP_038271511.1;Ontology_term=GO:0008652,GO:0004073,GO:0016620,GO:0051287;gbkey=CDS;go_function=aspartate-semialdehyde dehydrogenase activity|0004073||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,NAD binding|0051287||IEA;go_process=amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851986.1;locus_tag=LPH40_RS02285;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_038271511.1;transl_table=11 NZ_CP087685.1 RefSeq gene 552594 552893 . - . ID=gene-LPH40_RS02290;Name=LPH40_RS02290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02290;old_locus_tag=LPH40_02290 NZ_CP087685.1 GeneMarkS-2+ CDS 552594 552893 . - 0 ID=cds-WP_038271512.1;Parent=gene-LPH40_RS02290;Dbxref=Genbank:WP_038271512.1;Name=WP_038271512.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02290;product=hypothetical protein;protein_id=WP_038271512.1;transl_table=11 NZ_CP087685.1 RefSeq gene 552886 554004 . - . ID=gene-LPH40_RS02295;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=LPH40_RS02295;old_locus_tag=LPH40_02295 NZ_CP087685.1 Protein Homology CDS 552886 554004 . - 0 ID=cds-WP_038271513.1;Parent=gene-LPH40_RS02295;Dbxref=Genbank:WP_038271513.1;Name=WP_038271513.1;Ontology_term=GO:0009073,GO:0004107;gbkey=CDS;gene=aroC;go_function=chorismate synthase activity|0004107||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851985.1;locus_tag=LPH40_RS02295;product=chorismate synthase;protein_id=WP_038271513.1;transl_table=11 NZ_CP087685.1 RefSeq gene 554017 554943 . - . ID=gene-LPH40_RS02300;Name=prmB;gbkey=Gene;gene=prmB;gene_biotype=protein_coding;locus_tag=LPH40_RS02300;old_locus_tag=LPH40_02300 NZ_CP087685.1 Protein Homology CDS 554017 554943 . - 0 ID=cds-WP_038271514.1;Parent=gene-LPH40_RS02300;Dbxref=Genbank:WP_038271514.1;Name=WP_038271514.1;Ontology_term=GO:0018364,GO:0042273,GO:0008276,GO:0008757;gbkey=CDS;gene=prmB;go_function=protein methyltransferase activity|0008276||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=peptidyl-glutamine methylation|0018364||IEA,ribosomal large subunit biogenesis|0042273||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927455.1;locus_tag=LPH40_RS02300;product=50S ribosomal protein L3 N(5)-glutamine methyltransferase;protein_id=WP_038271514.1;transl_table=11 NZ_CP087685.1 RefSeq gene 555013 555390 . + . ID=gene-LPH40_RS02305;Name=LPH40_RS02305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02305;old_locus_tag=LPH40_02305 NZ_CP087685.1 Protein Homology CDS 555013 555390 . + 0 ID=cds-WP_038271515.1;Parent=gene-LPH40_RS02305;Dbxref=Genbank:WP_038271515.1;Name=WP_038271515.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014667.2;locus_tag=LPH40_RS02305;product=SCO family protein;protein_id=WP_038271515.1;transl_table=11 NZ_CP087685.1 RefSeq gene 555519 558107 . - . ID=gene-LPH40_RS02310;Name=LPH40_RS02310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02310;old_locus_tag=LPH40_02310 NZ_CP087685.1 Protein Homology CDS 555519 558107 . - 0 ID=cds-WP_230428230.1;Parent=gene-LPH40_RS02310;Dbxref=Genbank:WP_230428230.1;Name=WP_230428230.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338007.1;locus_tag=LPH40_RS02310;product=calcium-binding protein;protein_id=WP_230428230.1;transl_table=11 NZ_CP087685.1 RefSeq gene 558441 558644 . - . ID=gene-LPH40_RS02315;Name=LPH40_RS02315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02315;old_locus_tag=LPH40_02315 NZ_CP087685.1 GeneMarkS-2+ CDS 558441 558644 . - 0 ID=cds-WP_081755452.1;Parent=gene-LPH40_RS02315;Dbxref=Genbank:WP_081755452.1;Name=WP_081755452.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02315;product=hypothetical protein;protein_id=WP_081755452.1;transl_table=11 NZ_CP087685.1 RefSeq gene 558644 559057 . - . ID=gene-LPH40_RS02320;Name=LPH40_RS02320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02320;old_locus_tag=LPH40_02320 NZ_CP087685.1 Protein Homology CDS 558644 559057 . - 0 ID=cds-WP_230428231.1;Parent=gene-LPH40_RS02320;Dbxref=Genbank:WP_230428231.1;Name=WP_230428231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098140.1;locus_tag=LPH40_RS02320;product=hypothetical protein;protein_id=WP_230428231.1;transl_table=11 NZ_CP087685.1 RefSeq gene 559214 559744 . - . ID=gene-LPH40_RS02325;Name=LPH40_RS02325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02325;old_locus_tag=LPH40_02325 NZ_CP087685.1 Protein Homology CDS 559214 559744 . - 0 ID=cds-WP_201745726.1;Parent=gene-LPH40_RS02325;Dbxref=Genbank:WP_201745726.1;Name=WP_201745726.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382698.1;locus_tag=LPH40_RS02325;product=hypothetical protein;protein_id=WP_201745726.1;transl_table=11 NZ_CP087685.1 RefSeq gene 559972 560262 . - . ID=gene-LPH40_RS02330;Name=LPH40_RS02330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02330;old_locus_tag=LPH40_02330 NZ_CP087685.1 GeneMarkS-2+ CDS 559972 560262 . - 0 ID=cds-WP_038271516.1;Parent=gene-LPH40_RS02330;Dbxref=Genbank:WP_038271516.1;Name=WP_038271516.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02330;product=hypothetical protein;protein_id=WP_038271516.1;transl_table=11 NZ_CP087685.1 RefSeq gene 560255 560755 . - . ID=gene-LPH40_RS02335;Name=LPH40_RS02335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02335;old_locus_tag=LPH40_02335 NZ_CP087685.1 Protein Homology CDS 560255 560755 . - 0 ID=cds-WP_230428232.1;Parent=gene-LPH40_RS02335;Dbxref=Genbank:WP_230428232.1;Name=WP_230428232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893188.1;locus_tag=LPH40_RS02335;product=hypothetical protein;protein_id=WP_230428232.1;transl_table=11 NZ_CP087685.1 RefSeq gene 560954 561520 . - . ID=gene-LPH40_RS02340;Name=LPH40_RS02340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02340;old_locus_tag=LPH40_02340 NZ_CP087685.1 Protein Homology CDS 560954 561520 . - 0 ID=cds-WP_038271519.1;Parent=gene-LPH40_RS02340;Dbxref=Genbank:WP_038271519.1;Name=WP_038271519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088656.1;locus_tag=LPH40_RS02340;product=hypothetical protein;protein_id=WP_038271519.1;transl_table=11 NZ_CP087685.1 RefSeq gene 561669 562007 . - . ID=gene-LPH40_RS02345;Name=LPH40_RS02345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02345;old_locus_tag=LPH40_02345 NZ_CP087685.1 GeneMarkS-2+ CDS 561669 562007 . - 0 ID=cds-WP_152536630.1;Parent=gene-LPH40_RS02345;Dbxref=Genbank:WP_152536630.1;Name=WP_152536630.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02345;product=hypothetical protein;protein_id=WP_152536630.1;transl_table=11 NZ_CP087685.1 RefSeq gene 562000 562437 . - . ID=gene-LPH40_RS02350;Name=LPH40_RS02350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02350;old_locus_tag=LPH40_02350 NZ_CP087685.1 Protein Homology CDS 562000 562437 . - 0 ID=cds-WP_038271543.1;Parent=gene-LPH40_RS02350;Dbxref=Genbank:WP_038271543.1;Name=WP_038271543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088654.1;locus_tag=LPH40_RS02350;product=hypothetical protein;protein_id=WP_038271543.1;transl_table=11 NZ_CP087685.1 RefSeq gene 562691 563245 . - . ID=gene-LPH40_RS02355;Name=LPH40_RS02355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02355;old_locus_tag=LPH40_02355 NZ_CP087685.1 Protein Homology CDS 562691 563245 . - 0 ID=cds-WP_038271521.1;Parent=gene-LPH40_RS02355;Dbxref=Genbank:WP_038271521.1;Name=WP_038271521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098139.1;locus_tag=LPH40_RS02355;product=hypothetical protein;protein_id=WP_038271521.1;transl_table=11 NZ_CP087685.1 RefSeq gene 563196 563645 . - . ID=gene-LPH40_RS02360;Name=LPH40_RS02360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02360;old_locus_tag=LPH40_02360 NZ_CP087685.1 GeneMarkS-2+ CDS 563196 563645 . - 0 ID=cds-WP_038271522.1;Parent=gene-LPH40_RS02360;Dbxref=Genbank:WP_038271522.1;Name=WP_038271522.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02360;product=hypothetical protein;protein_id=WP_038271522.1;transl_table=11 NZ_CP087685.1 RefSeq gene 563686 564561 . - . ID=gene-LPH40_RS02365;Name=LPH40_RS02365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02365;old_locus_tag=LPH40_02365 NZ_CP087685.1 Protein Homology CDS 563686 564561 . - 0 ID=cds-WP_038271523.1;Parent=gene-LPH40_RS02365;Dbxref=Genbank:WP_038271523.1;Name=WP_038271523.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174296.1;locus_tag=LPH40_RS02365;product=polyprenyl synthetase family protein;protein_id=WP_038271523.1;transl_table=11 NZ_CP087685.1 RefSeq gene 564558 564824 . - . ID=gene-LPH40_RS02370;Name=LPH40_RS02370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02370;old_locus_tag=LPH40_02370 NZ_CP087685.1 Protein Homology CDS 564558 564824 . - 0 ID=cds-WP_038271524.1;Parent=gene-LPH40_RS02370;Dbxref=Genbank:WP_038271524.1;Name=WP_038271524.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088658.1;locus_tag=LPH40_RS02370;product=exodeoxyribonuclease VII small subunit;protein_id=WP_038271524.1;transl_table=11 NZ_CP087685.1 RefSeq gene 564856 566163 . - . ID=gene-LPH40_RS02375;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=LPH40_RS02375;old_locus_tag=LPH40_02375 NZ_CP087685.1 Protein Homology CDS 564856 566163 . - 0 ID=cds-WP_038271545.1;Parent=gene-LPH40_RS02375;Dbxref=Genbank:WP_038271545.1;Name=WP_038271545.1;Ontology_term=GO:0006400,GO:0016879;gbkey=CDS;gene=tilS;go_function=ligase activity%2C forming carbon-nitrogen bonds|0016879||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851476.1;locus_tag=LPH40_RS02375;product=tRNA lysidine(34) synthetase TilS;protein_id=WP_038271545.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 566563 567924 . - . ID=gene-LPH40_RS02380;Name=LPH40_RS02380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS02380;old_locus_tag=LPH40_02380;pseudo=true NZ_CP087685.1 Protein Homology CDS 566563 567924 . - 0 ID=cds-LPH40_RS02380;Parent=gene-LPH40_RS02380;Note=frameshifted;Ontology_term=GO:0016791;gbkey=CDS;go_function=phosphatase activity|0016791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088661.1;locus_tag=LPH40_RS02380;product=alkaline phosphatase;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 568170 569483 . + . ID=gene-LPH40_RS02385;Name=LPH40_RS02385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02385;old_locus_tag=LPH40_02385 NZ_CP087685.1 Protein Homology CDS 568170 569483 . + 0 ID=cds-WP_038271525.1;Parent=gene-LPH40_RS02385;Dbxref=Genbank:WP_038271525.1;Name=WP_038271525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338012.1;locus_tag=LPH40_RS02385;product=dicarboxylate/amino acid:cation symporter;protein_id=WP_038271525.1;transl_table=11 NZ_CP087685.1 RefSeq gene 569953 570654 . - . ID=gene-LPH40_RS02390;Name=LPH40_RS02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02390;old_locus_tag=LPH40_02390 NZ_CP087685.1 Protein Homology CDS 569953 570654 . - 0 ID=cds-WP_081755453.1;Parent=gene-LPH40_RS02390;Dbxref=Genbank:WP_081755453.1;Name=WP_081755453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508276.1;locus_tag=LPH40_RS02390;product=C40 family peptidase;protein_id=WP_081755453.1;transl_table=11 NZ_CP087685.1 RefSeq gene 570855 571394 . - . ID=gene-LPH40_RS02395;Name=LPH40_RS02395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02395;old_locus_tag=LPH40_02395 NZ_CP087685.1 Protein Homology CDS 570855 571394 . - 0 ID=cds-WP_171898056.1;Parent=gene-LPH40_RS02395;Dbxref=Genbank:WP_171898056.1;Name=WP_171898056.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912976.1;locus_tag=LPH40_RS02395;product=C40 family peptidase;protein_id=WP_171898056.1;transl_table=11 NZ_CP087685.1 RefSeq gene 571510 571989 . + . ID=gene-LPH40_RS02400;Name=LPH40_RS02400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02400;old_locus_tag=LPH40_02400 NZ_CP087685.1 Protein Homology CDS 571510 571989 . + 0 ID=cds-WP_038271526.1;Parent=gene-LPH40_RS02400;Dbxref=Genbank:WP_038271526.1;Name=WP_038271526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083483.1;locus_tag=LPH40_RS02400;product=peptidylprolyl isomerase;protein_id=WP_038271526.1;transl_table=11 NZ_CP087685.1 RefSeq gene 572079 573320 . + . ID=gene-LPH40_RS02405;Name=LPH40_RS02405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02405;old_locus_tag=LPH40_02405 NZ_CP087685.1 Protein Homology CDS 572079 573320 . + 0 ID=cds-WP_230428295.1;Parent=gene-LPH40_RS02405;Dbxref=Genbank:WP_230428295.1;Name=WP_230428295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098144.1;locus_tag=LPH40_RS02405;product=DUF418 domain-containing protein;protein_id=WP_230428295.1;transl_table=11 NZ_CP087685.1 RefSeq gene 573684 574232 . - . ID=gene-LPH40_RS02410;Name=LPH40_RS02410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02410;old_locus_tag=LPH40_02410 NZ_CP087685.1 Protein Homology CDS 573684 574232 . - 0 ID=cds-WP_069636201.1;Parent=gene-LPH40_RS02410;Dbxref=Genbank:WP_069636201.1;Name=WP_069636201.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024736.2;locus_tag=LPH40_RS02410;product=transposase;protein_id=WP_069636201.1;transl_table=11 NZ_CP087685.1 RefSeq gene 574782 575444 . + . ID=gene-LPH40_RS02415;Name=LPH40_RS02415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02415;old_locus_tag=LPH40_02415 NZ_CP087685.1 Protein Homology CDS 574782 575444 . + 0 ID=cds-WP_038270444.1;Parent=gene-LPH40_RS02415;Dbxref=Genbank:WP_038270444.1;Name=WP_038270444.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019182637.1;locus_tag=LPH40_RS02415;product=rhomboid family intramembrane serine protease;protein_id=WP_038270444.1;transl_table=11 NZ_CP087685.1 RefSeq gene 576222 576383 . + . ID=gene-LPH40_RS02420;Name=LPH40_RS02420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02420;old_locus_tag=LPH40_02420 NZ_CP087685.1 GeneMarkS-2+ CDS 576222 576383 . + 0 ID=cds-WP_160165128.1;Parent=gene-LPH40_RS02420;Dbxref=Genbank:WP_160165128.1;Name=WP_160165128.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02420;product=hypothetical protein;protein_id=WP_160165128.1;transl_table=11 NZ_CP087685.1 RefSeq gene 576918 577094 . - . ID=gene-LPH40_RS02425;Name=LPH40_RS02425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02425;old_locus_tag=LPH40_02425 NZ_CP087685.1 GeneMarkS-2+ CDS 576918 577094 . - 0 ID=cds-WP_160165127.1;Parent=gene-LPH40_RS02425;Dbxref=Genbank:WP_160165127.1;Name=WP_160165127.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02425;product=hypothetical protein;protein_id=WP_160165127.1;transl_table=11 NZ_CP087685.1 RefSeq gene 577645 578328 . - . ID=gene-LPH40_RS02430;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=LPH40_RS02430;old_locus_tag=LPH40_02430 NZ_CP087685.1 Protein Homology CDS 577645 578328 . - 0 ID=cds-WP_114867173.1;Parent=gene-LPH40_RS02430;Dbxref=Genbank:WP_114867173.1;Name=WP_114867173.1;Ontology_term=GO:0006281,GO:0003906;gbkey=CDS;gene=nth;go_function=DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851466.1;locus_tag=LPH40_RS02430;product=endonuclease III;protein_id=WP_114867173.1;transl_table=11 NZ_CP087685.1 RefSeq gene 578328 578699 . - . ID=gene-LPH40_RS02435;Name=LPH40_RS02435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02435;old_locus_tag=LPH40_02435 NZ_CP087685.1 Protein Homology CDS 578328 578699 . - 0 ID=cds-WP_038270441.1;Parent=gene-LPH40_RS02435;Dbxref=Genbank:WP_038270441.1;Name=WP_038270441.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019185886.1;locus_tag=LPH40_RS02435;product=hypothetical protein;protein_id=WP_038270441.1;transl_table=11 NZ_CP087685.1 RefSeq gene 578887 579093 . - . ID=gene-LPH40_RS02440;Name=LPH40_RS02440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02440;old_locus_tag=LPH40_02440 NZ_CP087685.1 GeneMarkS-2+ CDS 578887 579093 . - 0 ID=cds-WP_160165126.1;Parent=gene-LPH40_RS02440;Dbxref=Genbank:WP_160165126.1;Name=WP_160165126.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02440;product=hypothetical protein;protein_id=WP_160165126.1;transl_table=11 NZ_CP087685.1 RefSeq gene 579505 580203 . + . ID=gene-LPH40_RS02445;Name=LPH40_RS02445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02445;old_locus_tag=LPH40_02445 NZ_CP087685.1 Protein Homology CDS 579505 580203 . + 0 ID=cds-WP_038270440.1;Parent=gene-LPH40_RS02445;Dbxref=Genbank:WP_038270440.1;Name=WP_038270440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804447.1;locus_tag=LPH40_RS02445;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_038270440.1;transl_table=11 NZ_CP087685.1 RefSeq gene 580454 581158 . + . ID=gene-LPH40_RS02450;Name=LPH40_RS02450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02450;old_locus_tag=LPH40_02450 NZ_CP087685.1 Protein Homology CDS 580454 581158 . + 0 ID=cds-WP_051482255.1;Parent=gene-LPH40_RS02450;Dbxref=Genbank:WP_051482255.1;Name=WP_051482255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010343964.1;locus_tag=LPH40_RS02450;product=CoA pyrophosphatase;protein_id=WP_051482255.1;transl_table=11 NZ_CP087685.1 RefSeq gene 581874 581961 . + . ID=gene-LPH40_RS02455;Name=LPH40_RS02455;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS02455;old_locus_tag=LPH40_02455 NZ_CP087685.1 tRNAscan-SE tRNA 581874 581961 . + . ID=rna-LPH40_RS02455;Parent=gene-LPH40_RS02455;anticodon=(pos:581908..581910);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS02455;product=tRNA-Ser NZ_CP087685.1 tRNAscan-SE exon 581874 581961 . + . ID=exon-LPH40_RS02455-1;Parent=rna-LPH40_RS02455;anticodon=(pos:581908..581910);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS02455;product=tRNA-Ser NZ_CP087685.1 RefSeq gene 582139 583101 . + . ID=gene-LPH40_RS02460;Name=LPH40_RS02460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02460;old_locus_tag=LPH40_02460 NZ_CP087685.1 Protein Homology CDS 582139 583101 . + 0 ID=cds-WP_051482254.1;Parent=gene-LPH40_RS02460;Dbxref=Genbank:WP_051482254.1;Name=WP_051482254.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013884.2;locus_tag=LPH40_RS02460;product=acyltransferase;protein_id=WP_051482254.1;transl_table=11 NZ_CP087685.1 RefSeq gene 583441 583566 . - . ID=gene-LPH40_RS11945;Name=LPH40_RS11945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11945 NZ_CP087685.1 GeneMarkS-2+ CDS 583441 583566 . - 0 ID=cds-WP_267903157.1;Parent=gene-LPH40_RS11945;Dbxref=Genbank:WP_267903157.1;Name=WP_267903157.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11945;product=hypothetical protein;protein_id=WP_267903157.1;transl_table=11 NZ_CP087685.1 RefSeq gene 583563 583982 . - . ID=gene-LPH40_RS02465;Name=LPH40_RS02465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02465;old_locus_tag=LPH40_02465 NZ_CP087685.1 GeneMarkS-2+ CDS 583563 583982 . - 0 ID=cds-WP_038270439.1;Parent=gene-LPH40_RS02465;Dbxref=Genbank:WP_038270439.1;Name=WP_038270439.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02465;product=hypothetical protein;protein_id=WP_038270439.1;transl_table=11 NZ_CP087685.1 RefSeq gene 584317 584475 . - . ID=gene-LPH40_RS02470;Name=LPH40_RS02470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02470;old_locus_tag=LPH40_02470 NZ_CP087685.1 GeneMarkS-2+ CDS 584317 584475 . - 0 ID=cds-WP_160165125.1;Parent=gene-LPH40_RS02470;Dbxref=Genbank:WP_160165125.1;Name=WP_160165125.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02470;product=hypothetical protein;protein_id=WP_160165125.1;transl_table=11 NZ_CP087685.1 RefSeq gene 585188 585310 . - . ID=gene-LPH40_RS11950;Name=LPH40_RS11950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11950 NZ_CP087685.1 GeneMarkS-2+ CDS 585188 585310 . - 0 ID=cds-WP_268980420.1;Parent=gene-LPH40_RS11950;Dbxref=Genbank:WP_268980420.1;Name=WP_268980420.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11950;product=hypothetical protein;protein_id=WP_268980420.1;transl_table=11 NZ_CP087685.1 RefSeq gene 585510 586361 . - . ID=gene-LPH40_RS02475;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=LPH40_RS02475;old_locus_tag=LPH40_02475 NZ_CP087685.1 Protein Homology CDS 585510 586361 . - 0 ID=cds-WP_038270438.1;Parent=gene-LPH40_RS02475;Dbxref=Genbank:WP_038270438.1;Name=WP_038270438.1;Ontology_term=GO:0019632,GO:0004764;gbkey=CDS;gene=aroE;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA;go_process=shikimate metabolic process|0019632||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340310.1;locus_tag=LPH40_RS02475;product=shikimate dehydrogenase;protein_id=WP_038270438.1;transl_table=11 NZ_CP087685.1 RefSeq gene 588484 589293 . + . ID=gene-LPH40_RS02480;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;locus_tag=LPH40_RS02480;old_locus_tag=LPH40_02480 NZ_CP087685.1 Protein Homology CDS 588484 589293 . + 0 ID=cds-WP_038270437.1;Parent=gene-LPH40_RS02480;Dbxref=Genbank:WP_038270437.1;Name=WP_038270437.1;Ontology_term=GO:0009228,GO:0008902,GO:0008972;gbkey=CDS;gene=thiD;go_function=hydroxymethylpyrimidine kinase activity|0008902||IEA,phosphomethylpyrimidine kinase activity|0008972||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853073.1;locus_tag=LPH40_RS02480;product=bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase;protein_id=WP_038270437.1;transl_table=11 NZ_CP087685.1 RefSeq gene 589656 589844 . - . ID=gene-LPH40_RS02485;Name=LPH40_RS02485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02485;old_locus_tag=LPH40_02485 NZ_CP087685.1 GeneMarkS-2+ CDS 589656 589844 . - 0 ID=cds-WP_114867174.1;Parent=gene-LPH40_RS02485;Dbxref=Genbank:WP_114867174.1;Name=WP_114867174.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02485;product=hypothetical protein;protein_id=WP_114867174.1;transl_table=11 NZ_CP087685.1 RefSeq gene 591073 591243 . - . ID=gene-LPH40_RS02490;Name=LPH40_RS02490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02490;old_locus_tag=LPH40_02490 NZ_CP087685.1 GeneMarkS-2+ CDS 591073 591243 . - 0 ID=cds-WP_160165123.1;Parent=gene-LPH40_RS02490;Dbxref=Genbank:WP_160165123.1;Name=WP_160165123.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02490;product=hypothetical protein;protein_id=WP_160165123.1;transl_table=11 NZ_CP087685.1 RefSeq gene 591621 592067 . - . ID=gene-LPH40_RS02495;Name=LPH40_RS02495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02495;old_locus_tag=LPH40_02495 NZ_CP087685.1 GeneMarkS-2+ CDS 591621 592067 . - 0 ID=cds-WP_152536576.1;Parent=gene-LPH40_RS02495;Dbxref=Genbank:WP_152536576.1;Name=WP_152536576.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02495;product=hypothetical protein;protein_id=WP_152536576.1;transl_table=11 NZ_CP087685.1 RefSeq gene 592217 594469 . - . ID=gene-LPH40_RS02500;Name=LPH40_RS02500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02500;old_locus_tag=LPH40_02500 NZ_CP087685.1 Protein Homology CDS 592217 594469 . - 0 ID=cds-WP_267903179.1;Parent=gene-LPH40_RS02500;Dbxref=Genbank:WP_267903179.1;Name=WP_267903179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411230.1;locus_tag=LPH40_RS02500;product=protein-disulfide reductase DsbD;protein_id=WP_267903179.1;transl_table=11 NZ_CP087685.1 RefSeq gene 594508 594846 . - . ID=gene-LPH40_RS02505;Name=LPH40_RS02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02505;old_locus_tag=LPH40_02505 NZ_CP087685.1 Protein Homology CDS 594508 594846 . - 0 ID=cds-WP_038270433.1;Parent=gene-LPH40_RS02505;Dbxref=Genbank:WP_038270433.1;Name=WP_038270433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893143.1;locus_tag=LPH40_RS02505;product=divalent-cation tolerance protein CutA;protein_id=WP_038270433.1;transl_table=11 NZ_CP087685.1 RefSeq gene 595438 595725 . + . ID=gene-LPH40_RS02510;Name=LPH40_RS02510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02510;old_locus_tag=LPH40_02510 NZ_CP087685.1 Protein Homology CDS 595438 595725 . + 0 ID=cds-WP_038270432.1;Parent=gene-LPH40_RS02510;Dbxref=Genbank:WP_038270432.1;Name=WP_038270432.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303525.1;locus_tag=LPH40_RS02510;product=co-chaperone GroES;protein_id=WP_038270432.1;transl_table=11 NZ_CP087685.1 RefSeq gene 595836 597476 . + . ID=gene-LPH40_RS02515;Name=groL;gbkey=Gene;gene=groL;gene_biotype=protein_coding;locus_tag=LPH40_RS02515;old_locus_tag=LPH40_02515 NZ_CP087685.1 Protein Homology CDS 595836 597476 . + 0 ID=cds-WP_038270431.1;Parent=gene-LPH40_RS02515;Dbxref=Genbank:WP_038270431.1;Name=WP_038270431.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds;Ontology_term=GO:0006457,GO:0005515,GO:0016887;gbkey=CDS;gene=groL;go_function=protein binding|0005515||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411226.1;locus_tag=LPH40_RS02515;product=chaperonin GroEL;protein_id=WP_038270431.1;transl_table=11 NZ_CP087685.1 RefSeq gene 598667 600706 . - . ID=gene-LPH40_RS02520;Name=LPH40_RS02520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02520;old_locus_tag=LPH40_02520 NZ_CP087685.1 Protein Homology CDS 598667 600706 . - 0 ID=cds-WP_038270430.1;Parent=gene-LPH40_RS02520;Dbxref=Genbank:WP_038270430.1;Name=WP_038270430.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083509.1;locus_tag=LPH40_RS02520;product=hypothetical protein;protein_id=WP_038270430.1;transl_table=11 NZ_CP087685.1 RefSeq gene 600729 601328 . - . ID=gene-LPH40_RS02525;Name=LPH40_RS02525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02525;old_locus_tag=LPH40_02525 NZ_CP087685.1 Protein Homology CDS 600729 601328 . - 0 ID=cds-WP_038270429.1;Parent=gene-LPH40_RS02525;Dbxref=Genbank:WP_038270429.1;Name=WP_038270429.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852776.1;locus_tag=LPH40_RS02525;product=hypothetical protein;protein_id=WP_038270429.1;transl_table=11 NZ_CP087685.1 RefSeq gene 601325 601732 . - . ID=gene-LPH40_RS02530;Name=LPH40_RS02530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02530;old_locus_tag=LPH40_02530 NZ_CP087685.1 Protein Homology CDS 601325 601732 . - 0 ID=cds-WP_038270428.1;Parent=gene-LPH40_RS02530;Dbxref=Genbank:WP_038270428.1;Name=WP_038270428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088687.1;locus_tag=LPH40_RS02530;product=GtrA family protein;protein_id=WP_038270428.1;transl_table=11 NZ_CP087685.1 RefSeq gene 601716 602669 . - . ID=gene-LPH40_RS02535;Name=LPH40_RS02535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02535;old_locus_tag=LPH40_02535 NZ_CP087685.1 Protein Homology CDS 601716 602669 . - 0 ID=cds-WP_038270427.1;Parent=gene-LPH40_RS02535;Dbxref=Genbank:WP_038270427.1;Name=WP_038270427.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083510.1;locus_tag=LPH40_RS02535;product=glycosyltransferase;protein_id=WP_038270427.1;transl_table=11 NZ_CP087685.1 RefSeq gene 602672 603616 . - . ID=gene-LPH40_RS02540;Name=LPH40_RS02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02540;old_locus_tag=LPH40_02540 NZ_CP087685.1 Protein Homology CDS 602672 603616 . - 0 ID=cds-WP_038270426.1;Parent=gene-LPH40_RS02540;Dbxref=Genbank:WP_038270426.1;Name=WP_038270426.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088689.1;locus_tag=LPH40_RS02540;product=SDR family oxidoreductase;protein_id=WP_038270426.1;transl_table=11 NZ_CP087685.1 RefSeq gene 603803 604717 . - . ID=gene-LPH40_RS02545;Name=LPH40_RS02545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02545;old_locus_tag=LPH40_02545 NZ_CP087685.1 Protein Homology CDS 603803 604717 . - 0 ID=cds-WP_038270425.1;Parent=gene-LPH40_RS02545;Dbxref=Genbank:WP_038270425.1;Name=WP_038270425.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035851.1;locus_tag=LPH40_RS02545;product=GDP-mannose 4%2C6-dehydratase;protein_id=WP_038270425.1;transl_table=11 NZ_CP087685.1 RefSeq gene 604717 605757 . - . ID=gene-LPH40_RS02550;Name=gmd;gbkey=Gene;gene=gmd;gene_biotype=protein_coding;locus_tag=LPH40_RS02550;old_locus_tag=LPH40_02550 NZ_CP087685.1 Protein Homology CDS 604717 605757 . - 0 ID=cds-WP_038270424.1;Parent=gene-LPH40_RS02550;Dbxref=Genbank:WP_038270424.1;Name=WP_038270424.1;Ontology_term=GO:0000271,GO:0008446;gbkey=CDS;gene=gmd;go_function=GDP-mannose 4%2C6-dehydratase activity|0008446||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852782.1;locus_tag=LPH40_RS02550;product=GDP-mannose 4%2C6-dehydratase;protein_id=WP_038270424.1;transl_table=11 NZ_CP087685.1 RefSeq gene 605849 608392 . - . ID=gene-LPH40_RS02555;Name=LPH40_RS02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02555;old_locus_tag=LPH40_02555 NZ_CP087685.1 Protein Homology CDS 605849 608392 . - 0 ID=cds-WP_038270423.1;Parent=gene-LPH40_RS02555;Dbxref=Genbank:WP_038270423.1;Name=WP_038270423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852783.1;locus_tag=LPH40_RS02555;product=glycosyltransferase family 1 protein;protein_id=WP_038270423.1;transl_table=11 NZ_CP087685.1 RefSeq gene 608396 609778 . - . ID=gene-LPH40_RS02560;Name=LPH40_RS02560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02560;old_locus_tag=LPH40_02560 NZ_CP087685.1 Protein Homology CDS 608396 609778 . - 0 ID=cds-WP_038270422.1;Parent=gene-LPH40_RS02560;Dbxref=Genbank:WP_038270422.1;Name=WP_038270422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088692.1;locus_tag=LPH40_RS02560;product=FkbM family methyltransferase;protein_id=WP_038270422.1;transl_table=11 NZ_CP087685.1 RefSeq gene 610046 611416 . - . ID=gene-LPH40_RS02565;Name=LPH40_RS02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02565;old_locus_tag=LPH40_02565 NZ_CP087685.1 Protein Homology CDS 610046 611416 . - 0 ID=cds-WP_038270421.1;Parent=gene-LPH40_RS02565;Dbxref=Genbank:WP_038270421.1;Name=WP_038270421.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157251.1;locus_tag=LPH40_RS02565;product=pyridoxal-phosphate dependent enzyme;protein_id=WP_038270421.1;transl_table=11 NZ_CP087685.1 RefSeq gene 611562 611780 . - . ID=gene-LPH40_RS02570;Name=LPH40_RS02570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02570;old_locus_tag=LPH40_02570 NZ_CP087685.1 Protein Homology CDS 611562 611780 . - 0 ID=cds-WP_038270420.1;Parent=gene-LPH40_RS02570;Dbxref=Genbank:WP_038270420.1;Name=WP_038270420.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237985.1;locus_tag=LPH40_RS02570;product=YdcH family protein;protein_id=WP_038270420.1;transl_table=11 NZ_CP087685.1 RefSeq gene 612109 613005 . - . ID=gene-LPH40_RS02575;Name=LPH40_RS02575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02575;old_locus_tag=LPH40_02575 NZ_CP087685.1 Protein Homology CDS 612109 613005 . - 0 ID=cds-WP_038270460.1;Parent=gene-LPH40_RS02575;Dbxref=Genbank:WP_038270460.1;Name=WP_038270460.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161845.1;locus_tag=LPH40_RS02575;product=membrane protein;protein_id=WP_038270460.1;transl_table=11 NZ_CP087685.1 RefSeq gene 613008 613400 . - . ID=gene-LPH40_RS02580;Name=LPH40_RS02580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02580;old_locus_tag=LPH40_02580 NZ_CP087685.1 Protein Homology CDS 613008 613400 . - 0 ID=cds-WP_038270419.1;Parent=gene-LPH40_RS02580;Dbxref=Genbank:WP_038270419.1;Name=WP_038270419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088696.1;locus_tag=LPH40_RS02580;product=DUF4398 domain-containing protein;protein_id=WP_038270419.1;transl_table=11 NZ_CP087685.1 RefSeq gene 613810 616089 . + . ID=gene-LPH40_RS02585;Name=LPH40_RS02585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02585;old_locus_tag=LPH40_02585 NZ_CP087685.1 Protein Homology CDS 613810 616089 . + 0 ID=cds-WP_038270418.1;Parent=gene-LPH40_RS02585;Dbxref=Genbank:WP_038270418.1;Name=WP_038270418.1;Ontology_term=GO:0015891,GO:0015344;gbkey=CDS;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088697.1;locus_tag=LPH40_RS02585;product=catecholate siderophore receptor Fiu;protein_id=WP_038270418.1;transl_table=11 NZ_CP087685.1 RefSeq gene 616133 616825 . + . ID=gene-LPH40_RS02590;Name=LPH40_RS02590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02590;old_locus_tag=LPH40_02590 NZ_CP087685.1 Protein Homology CDS 616133 616825 . + 0 ID=cds-WP_038270417.1;Parent=gene-LPH40_RS02590;Dbxref=Genbank:WP_038270417.1;Name=WP_038270417.1;Ontology_term=GO:0005506,GO:0016706,GO:0031418;gbkey=CDS;go_function=iron ion binding|0005506||IEA,2-oxoglutarate-dependent dioxygenase activity|0016706||IEA,L-ascorbic acid binding|0031418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088698.1;locus_tag=LPH40_RS02590;product=Fe2+-dependent dioxygenase;protein_id=WP_038270417.1;transl_table=11 NZ_CP087685.1 RefSeq gene 616834 617484 . + . ID=gene-LPH40_RS02595;Name=LPH40_RS02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02595;old_locus_tag=LPH40_02595 NZ_CP087685.1 Protein Homology CDS 616834 617484 . + 0 ID=cds-WP_038270416.1;Parent=gene-LPH40_RS02595;Dbxref=Genbank:WP_038270416.1;Name=WP_038270416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487779.1;locus_tag=LPH40_RS02595;product=PepSY-associated TM helix domain-containing protein;protein_id=WP_038270416.1;transl_table=11 NZ_CP087685.1 RefSeq gene 617504 618016 . + . ID=gene-LPH40_RS02600;Name=LPH40_RS02600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02600;old_locus_tag=LPH40_02600 NZ_CP087685.1 Protein Homology CDS 617504 618016 . + 0 ID=cds-WP_038270415.1;Parent=gene-LPH40_RS02600;Dbxref=Genbank:WP_038270415.1;Name=WP_038270415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450672.1;locus_tag=LPH40_RS02600;product=DUF2271 domain-containing protein;protein_id=WP_038270415.1;transl_table=11 NZ_CP087685.1 RefSeq gene 618051 618854 . + . ID=gene-LPH40_RS02605;Name=LPH40_RS02605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02605;old_locus_tag=LPH40_02605 NZ_CP087685.1 Protein Homology CDS 618051 618854 . + 0 ID=cds-WP_038270414.1;Parent=gene-LPH40_RS02605;Dbxref=Genbank:WP_038270414.1;Name=WP_038270414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237449.1;locus_tag=LPH40_RS02605;product=DUF4198 domain-containing protein;protein_id=WP_038270414.1;transl_table=11 NZ_CP087685.1 RefSeq gene 618920 619891 . + . ID=gene-LPH40_RS02610;Name=LPH40_RS02610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02610;old_locus_tag=LPH40_02610 NZ_CP087685.1 Protein Homology CDS 618920 619891 . + 0 ID=cds-WP_038270413.1;Parent=gene-LPH40_RS02610;Dbxref=Genbank:WP_038270413.1;Name=WP_038270413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851166.1;locus_tag=LPH40_RS02610;product=FAD:protein FMN transferase;protein_id=WP_038270413.1;transl_table=11 NZ_CP087685.1 RefSeq gene 619888 621468 . + . ID=gene-LPH40_RS02615;Name=LPH40_RS02615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02615;old_locus_tag=LPH40_02615 NZ_CP087685.1 Protein Homology CDS 619888 621468 . + 0 ID=cds-WP_038270412.1;Parent=gene-LPH40_RS02615;Dbxref=Genbank:WP_038270412.1;Name=WP_038270412.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019659424.1;locus_tag=LPH40_RS02615;product=sulfite reductase subunit alpha;protein_id=WP_038270412.1;transl_table=11 NZ_CP087685.1 RefSeq gene 622324 622653 . - . ID=gene-LPH40_RS02620;Name=LPH40_RS02620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02620;old_locus_tag=LPH40_02620 NZ_CP087685.1 Protein Homology CDS 622324 622653 . - 0 ID=cds-WP_038270411.1;Parent=gene-LPH40_RS02620;Dbxref=Genbank:WP_038270411.1;Name=WP_038270411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851167.1;locus_tag=LPH40_RS02620;product=helix-hairpin-helix domain-containing protein;protein_id=WP_038270411.1;transl_table=11 NZ_CP087685.1 RefSeq gene 623826 624011 . + . ID=gene-LPH40_RS02625;Name=LPH40_RS02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02625;old_locus_tag=LPH40_02625 NZ_CP087685.1 GeneMarkS-2+ CDS 623826 624011 . + 0 ID=cds-WP_152536575.1;Parent=gene-LPH40_RS02625;Dbxref=Genbank:WP_152536575.1;Name=WP_152536575.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02625;product=hypothetical protein;protein_id=WP_152536575.1;transl_table=11 NZ_CP087685.1 RefSeq gene 624545 625564 . + . ID=gene-LPH40_RS02630;Name=LPH40_RS02630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02630;old_locus_tag=LPH40_02630 NZ_CP087685.1 Protein Homology CDS 624545 625564 . + 0 ID=cds-WP_171898092.1;Parent=gene-LPH40_RS02630;Dbxref=Genbank:WP_171898092.1;Name=WP_171898092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009591863.1;locus_tag=LPH40_RS02630;product=phosphotransferase;protein_id=WP_171898092.1;transl_table=11 NZ_CP087685.1 RefSeq gene 625561 626280 . + . ID=gene-LPH40_RS02635;Name=LPH40_RS02635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02635;old_locus_tag=LPH40_02635 NZ_CP087685.1 Protein Homology CDS 625561 626280 . + 0 ID=cds-WP_038270408.1;Parent=gene-LPH40_RS02635;Dbxref=Genbank:WP_038270408.1;Name=WP_038270408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369254.1;locus_tag=LPH40_RS02635;product=nucleotidyltransferase family protein;protein_id=WP_038270408.1;transl_table=11 NZ_CP087685.1 RefSeq gene 626380 627162 . - . ID=gene-LPH40_RS02640;Name=hda;gbkey=Gene;gene=hda;gene_biotype=protein_coding;locus_tag=LPH40_RS02640;old_locus_tag=LPH40_02640 NZ_CP087685.1 Protein Homology CDS 626380 627162 . - 0 ID=cds-WP_081755397.1;Parent=gene-LPH40_RS02640;Dbxref=Genbank:WP_081755397.1;Name=WP_081755397.1;Ontology_term=GO:0032297,GO:0016818;gbkey=CDS;gene=hda;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;go_process=negative regulation of DNA-templated DNA replication initiation|0032297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369247.1;locus_tag=LPH40_RS02640;product=DnaA regulatory inactivator Hda;protein_id=WP_081755397.1;transl_table=11 NZ_CP087685.1 RefSeq gene 627159 628316 . - . ID=gene-LPH40_RS02645;Name=LPH40_RS02645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02645;old_locus_tag=LPH40_02645 NZ_CP087685.1 Protein Homology CDS 627159 628316 . - 0 ID=cds-WP_038270407.1;Parent=gene-LPH40_RS02645;Dbxref=Genbank:WP_038270407.1;Name=WP_038270407.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851171.1;locus_tag=LPH40_RS02645;product=AI-2E family transporter;protein_id=WP_038270407.1;transl_table=11 NZ_CP087685.1 RefSeq gene 628313 629413 . - . ID=gene-LPH40_RS02650;Name=LPH40_RS02650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02650;old_locus_tag=LPH40_02650 NZ_CP087685.1 Protein Homology CDS 628313 629413 . - 0 ID=cds-WP_162814105.1;Parent=gene-LPH40_RS02650;Dbxref=Genbank:WP_162814105.1;Name=WP_162814105.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382704.1;locus_tag=LPH40_RS02650;product=DUF2066 domain-containing protein;protein_id=WP_162814105.1;transl_table=11 NZ_CP087685.1 RefSeq gene 629528 630583 . + . ID=gene-LPH40_RS02655;Name=purM;gbkey=Gene;gene=purM;gene_biotype=protein_coding;locus_tag=LPH40_RS02655;old_locus_tag=LPH40_02655 NZ_CP087685.1 Protein Homology CDS 629528 630583 . + 0 ID=cds-WP_038270405.1;Parent=gene-LPH40_RS02655;Dbxref=Genbank:WP_038270405.1;Name=WP_038270405.1;Ontology_term=GO:0006189,GO:0009152,GO:0004641;gbkey=CDS;gene=purM;go_function=phosphoribosylformylglycinamidine cyclo-ligase activity|0004641||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098163.1;locus_tag=LPH40_RS02655;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=WP_038270405.1;transl_table=11 NZ_CP087685.1 RefSeq gene 630672 631340 . + . ID=gene-LPH40_RS02660;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=LPH40_RS02660;old_locus_tag=LPH40_02660 NZ_CP087685.1 Protein Homology CDS 630672 631340 . + 0 ID=cds-WP_038270404.1;Parent=gene-LPH40_RS02660;Dbxref=Genbank:WP_038270404.1;Name=WP_038270404.1;Ontology_term=GO:0009152,GO:0004644;gbkey=CDS;gene=purN;go_function=phosphoribosylglycinamide formyltransferase activity|0004644||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083533.1;locus_tag=LPH40_RS02660;product=phosphoribosylglycinamide formyltransferase;protein_id=WP_038270404.1;transl_table=11 NZ_CP087685.1 RefSeq gene 631516 632259 . + . ID=gene-LPH40_RS02665;Name=LPH40_RS02665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02665;old_locus_tag=LPH40_02665 NZ_CP087685.1 Protein Homology CDS 631516 632259 . + 0 ID=cds-WP_230428296.1;Parent=gene-LPH40_RS02665;Dbxref=Genbank:WP_230428296.1;Name=WP_230428296.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005412504.1;locus_tag=LPH40_RS02665;product=DUF3108 domain-containing protein;protein_id=WP_230428296.1;transl_table=11 NZ_CP087685.1 RefSeq gene 632263 632946 . + . ID=gene-LPH40_RS02670;Name=LPH40_RS02670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02670;old_locus_tag=LPH40_02670 NZ_CP087685.1 Protein Homology CDS 632263 632946 . + 0 ID=cds-WP_038270402.1;Parent=gene-LPH40_RS02670;Dbxref=Genbank:WP_038270402.1;Name=WP_038270402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852582.1;locus_tag=LPH40_RS02670;product=DUF3108 domain-containing protein;protein_id=WP_038270402.1;transl_table=11 NZ_CP087685.1 RefSeq gene 633512 634174 . - . ID=gene-LPH40_RS02675;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=LPH40_RS02675;old_locus_tag=LPH40_02675 NZ_CP087685.1 Protein Homology CDS 633512 634174 . - 0 ID=cds-WP_038270401.1;Parent=gene-LPH40_RS02675;Dbxref=Genbank:WP_038270401.1;Name=WP_038270401.1;Ontology_term=GO:0015949,GO:0004798;gbkey=CDS;gene=tmk;go_function=thymidylate kinase activity|0004798||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893106.1;locus_tag=LPH40_RS02675;product=dTMP kinase;protein_id=WP_038270401.1;transl_table=11 NZ_CP087685.1 RefSeq gene 635070 637172 . + . ID=gene-LPH40_RS02680;Name=LPH40_RS02680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02680;old_locus_tag=LPH40_02680 NZ_CP087685.1 Protein Homology CDS 635070 637172 . + 0 ID=cds-WP_038270400.1;Parent=gene-LPH40_RS02680;Dbxref=Genbank:WP_038270400.1;Name=WP_038270400.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083537.1;locus_tag=LPH40_RS02680;product=M13 family metallopeptidase;protein_id=WP_038270400.1;transl_table=11 NZ_CP087685.1 RefSeq gene 638168 638686 . + . ID=gene-LPH40_RS02685;Name=fabA;gbkey=Gene;gene=fabA;gene_biotype=protein_coding;locus_tag=LPH40_RS02685;old_locus_tag=LPH40_02685 NZ_CP087685.1 Protein Homology CDS 638168 638686 . + 0 ID=cds-WP_038270397.1;Parent=gene-LPH40_RS02685;Dbxref=Genbank:WP_038270397.1;Name=WP_038270397.1;Ontology_term=GO:0019171;gbkey=CDS;gene=fabA;go_function=3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|0019171||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035827.1;locus_tag=LPH40_RS02685;product=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA;protein_id=WP_038270397.1;transl_table=11 NZ_CP087685.1 RefSeq gene 640273 641136 . + . ID=gene-LPH40_RS02690;Name=ttcA;gbkey=Gene;gene=ttcA;gene_biotype=protein_coding;locus_tag=LPH40_RS02690;old_locus_tag=LPH40_02690 NZ_CP087685.1 Protein Homology CDS 640273 641136 . + 0 ID=cds-WP_230428297.1;Parent=gene-LPH40_RS02690;Dbxref=Genbank:WP_230428297.1;Name=WP_230428297.1;Ontology_term=GO:0008033;gbkey=CDS;gene=ttcA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019397041.1;locus_tag=LPH40_RS02690;product=tRNA 2-thiocytidine(32) synthetase TtcA;protein_id=WP_230428297.1;transl_table=11 NZ_CP087685.1 RefSeq gene 641175 642083 . + . ID=gene-LPH40_RS02695;Name=rdgC;gbkey=Gene;gene=rdgC;gene_biotype=protein_coding;locus_tag=LPH40_RS02695;old_locus_tag=LPH40_02695 NZ_CP087685.1 Protein Homology CDS 641175 642083 . + 0 ID=cds-WP_038270395.1;Parent=gene-LPH40_RS02695;Dbxref=Genbank:WP_038270395.1;Name=WP_038270395.1;gbkey=CDS;gene=rdgC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154674.1;locus_tag=LPH40_RS02695;product=recombination-associated protein RdgC;protein_id=WP_038270395.1;transl_table=11 NZ_CP087685.1 RefSeq gene 642153 642914 . + . ID=gene-LPH40_RS02700;Name=LPH40_RS02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02700;old_locus_tag=LPH40_02700 NZ_CP087685.1 Protein Homology CDS 642153 642914 . + 0 ID=cds-WP_038270394.1;Parent=gene-LPH40_RS02700;Dbxref=Genbank:WP_038270394.1;Name=WP_038270394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088764.1;locus_tag=LPH40_RS02700;product=SprT family zinc-dependent metalloprotease;protein_id=WP_038270394.1;transl_table=11 NZ_CP087685.1 RefSeq gene 643245 644207 . - . ID=gene-LPH40_RS02705;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;locus_tag=LPH40_RS02705;old_locus_tag=LPH40_02705 NZ_CP087685.1 Protein Homology CDS 643245 644207 . - 0 ID=cds-WP_038270393.1;Parent=gene-LPH40_RS02705;Dbxref=Genbank:WP_038270393.1;Name=WP_038270393.1;Ontology_term=GO:0006779,GO:0004325;gbkey=CDS;gene=hemH;go_function=ferrochelatase activity|0004325||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852273.1;locus_tag=LPH40_RS02705;product=ferrochelatase;protein_id=WP_038270393.1;transl_table=11 NZ_CP087685.1 RefSeq gene 644376 645269 . + . ID=gene-LPH40_RS02710;Name=LPH40_RS02710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02710;old_locus_tag=LPH40_02710 NZ_CP087685.1 Protein Homology CDS 644376 645269 . + 0 ID=cds-WP_038270392.1;Parent=gene-LPH40_RS02710;Dbxref=Genbank:WP_038270392.1;Name=WP_038270392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852274.1;locus_tag=LPH40_RS02710;product=YSC84-related protein;protein_id=WP_038270392.1;transl_table=11 NZ_CP087685.1 RefSeq gene 645344 645559 . + . ID=gene-LPH40_RS02715;Name=LPH40_RS02715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02715;old_locus_tag=LPH40_02715 NZ_CP087685.1 Protein Homology CDS 645344 645559 . + 0 ID=cds-WP_038270391.1;Parent=gene-LPH40_RS02715;Dbxref=Genbank:WP_038270391.1;Name=WP_038270391.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083544.1;locus_tag=LPH40_RS02715;product=Sec-independent protein translocase subunit TatA;protein_id=WP_038270391.1;transl_table=11 NZ_CP087685.1 RefSeq gene 645577 645999 . + . ID=gene-LPH40_RS02720;Name=tatB;gbkey=Gene;gene=tatB;gene_biotype=protein_coding;locus_tag=LPH40_RS02720;old_locus_tag=LPH40_02720 NZ_CP087685.1 Protein Homology CDS 645577 645999 . + 0 ID=cds-WP_038270390.1;Parent=gene-LPH40_RS02720;Dbxref=Genbank:WP_038270390.1;Name=WP_038270390.1;Ontology_term=GO:0015031,GO:0015628;gbkey=CDS;gene=tatB;go_process=protein transport|0015031||IEA,protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088772.1;locus_tag=LPH40_RS02720;product=Sec-independent protein translocase protein TatB;protein_id=WP_038270390.1;transl_table=11 NZ_CP087685.1 RefSeq gene 645996 646736 . + . ID=gene-LPH40_RS02725;Name=tatC;gbkey=Gene;gene=tatC;gene_biotype=protein_coding;locus_tag=LPH40_RS02725;old_locus_tag=LPH40_02725 NZ_CP087685.1 Protein Homology CDS 645996 646736 . + 0 ID=cds-WP_038270389.1;Parent=gene-LPH40_RS02725;Dbxref=Genbank:WP_038270389.1;Name=WP_038270389.1;Ontology_term=GO:0015628,GO:0005886;gbkey=CDS;gene=tatC;go_component=plasma membrane|0005886||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893088.1;locus_tag=LPH40_RS02725;product=twin-arginine translocase subunit TatC;protein_id=WP_038270389.1;transl_table=11 NZ_CP087685.1 RefSeq gene 646800 647672 . - . ID=gene-LPH40_RS02730;Name=LPH40_RS02730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02730;old_locus_tag=LPH40_02730 NZ_CP087685.1 Protein Homology CDS 646800 647672 . - 0 ID=cds-WP_038270388.1;Parent=gene-LPH40_RS02730;Dbxref=Genbank:WP_038270388.1;Name=WP_038270388.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088776.1;locus_tag=LPH40_RS02730;product=BPSS1780 family membrane protein;protein_id=WP_038270388.1;transl_table=11 NZ_CP087685.1 RefSeq gene 647921 648643 . - . ID=gene-LPH40_RS02735;Name=LPH40_RS02735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02735;old_locus_tag=LPH40_02735 NZ_CP087685.1 Protein Homology CDS 647921 648643 . - 0 ID=cds-WP_038270387.1;Parent=gene-LPH40_RS02735;Dbxref=Genbank:WP_038270387.1;Name=WP_038270387.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088782.1;locus_tag=LPH40_RS02735;product=glutamine amidotransferase;protein_id=WP_038270387.1;transl_table=11 NZ_CP087685.1 RefSeq gene 649973 650395 . + . ID=gene-LPH40_RS02740;Name=azu;gbkey=Gene;gene=azu;gene_biotype=protein_coding;locus_tag=LPH40_RS02740;old_locus_tag=LPH40_02740 NZ_CP087685.1 Protein Homology CDS 649973 650395 . + 0 ID=cds-WP_038270457.1;Parent=gene-LPH40_RS02740;Dbxref=Genbank:WP_038270457.1;Name=WP_038270457.1;Ontology_term=GO:0005507,GO:0009055;gbkey=CDS;gene=azu;go_function=copper ion binding|0005507||IEA,electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237306.1;locus_tag=LPH40_RS02740;product=azurin;protein_id=WP_038270457.1;transl_table=11 NZ_CP087685.1 RefSeq gene 651203 652222 . - . ID=gene-LPH40_RS02745;Name=rsgA;gbkey=Gene;gene=rsgA;gene_biotype=protein_coding;locus_tag=LPH40_RS02745;old_locus_tag=LPH40_02745 NZ_CP087685.1 Protein Homology CDS 651203 652222 . - 0 ID=cds-WP_038270385.1;Parent=gene-LPH40_RS02745;Dbxref=Genbank:WP_038270385.1;Name=WP_038270385.1;Ontology_term=GO:0006412,GO:0005525,GO:0043022;gbkey=CDS;gene=rsgA;go_function=GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098172.1;locus_tag=LPH40_RS02745;product=ribosome small subunit-dependent GTPase A;protein_id=WP_038270385.1;transl_table=11 NZ_CP087685.1 RefSeq gene 652618 652983 . - . ID=gene-LPH40_RS02750;Name=LPH40_RS02750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02750;old_locus_tag=LPH40_02750 NZ_CP087685.1 Protein Homology CDS 652618 652983 . - 0 ID=cds-WP_038270384.1;Parent=gene-LPH40_RS02750;Dbxref=Genbank:WP_038270384.1;Name=WP_038270384.1;Ontology_term=GO:0003676,GO:0004518;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893080.1;locus_tag=LPH40_RS02750;product=YraN family protein;protein_id=WP_038270384.1;transl_table=11 NZ_CP087685.1 RefSeq gene 652987 654717 . - . ID=gene-LPH40_RS02755;Name=LPH40_RS02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02755;old_locus_tag=LPH40_02755 NZ_CP087685.1 Protein Homology CDS 652987 654717 . - 0 ID=cds-WP_038270383.1;Parent=gene-LPH40_RS02755;Dbxref=Genbank:WP_038270383.1;Name=WP_038270383.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083552.1;locus_tag=LPH40_RS02755;product=penicillin-binding protein activator;protein_id=WP_038270383.1;transl_table=11 NZ_CP087685.1 RefSeq gene 654799 655620 . + . ID=gene-LPH40_RS02760;Name=rsmI;gbkey=Gene;gene=rsmI;gene_biotype=protein_coding;locus_tag=LPH40_RS02760;old_locus_tag=LPH40_02760 NZ_CP087685.1 Protein Homology CDS 654799 655620 . + 0 ID=cds-WP_038270382.1;Parent=gene-LPH40_RS02760;Dbxref=Genbank:WP_038270382.1;Name=WP_038270382.1;Ontology_term=GO:0000451,GO:0008649,GO:0008757;gbkey=CDS;gene=rsmI;go_function=rRNA methyltransferase activity|0008649||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=rRNA 2'-O-methylation|0000451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088794.1;locus_tag=LPH40_RS02760;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_038270382.1;transl_table=11 NZ_CP087685.1 RefSeq gene 656695 659811 . + . ID=gene-LPH40_RS02765;Name=LPH40_RS02765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02765;old_locus_tag=LPH40_02765 NZ_CP087685.1 Protein Homology CDS 656695 659811 . + 0 ID=cds-WP_038270380.1;Parent=gene-LPH40_RS02765;Dbxref=Genbank:WP_038270380.1;Name=WP_038270380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852285.1;locus_tag=LPH40_RS02765;product=TonB-dependent receptor;protein_id=WP_038270380.1;transl_table=11 NZ_CP087685.1 RefSeq gene 659980 662061 . + . ID=gene-LPH40_RS02770;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=LPH40_RS02770;old_locus_tag=LPH40_02770 NZ_CP087685.1 Protein Homology CDS 659980 662061 . + 0 ID=cds-WP_038270456.1;Parent=gene-LPH40_RS02770;Dbxref=Genbank:WP_038270456.1;Name=WP_038270456.1;Ontology_term=GO:0006431,GO:0000166,GO:0004825,GO:0005524;gbkey=CDS;gene=metG;go_function=nucleotide binding|0000166||IEA,methionine-tRNA ligase activity|0004825||IEA,ATP binding|0005524||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304414.1;locus_tag=LPH40_RS02770;product=methionine--tRNA ligase;protein_id=WP_038270456.1;transl_table=11 NZ_CP087685.1 RefSeq gene 662130 662384 . - . ID=gene-LPH40_RS02775;Name=LPH40_RS02775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02775;old_locus_tag=LPH40_02775 NZ_CP087685.1 GeneMarkS-2+ CDS 662130 662384 . - 0 ID=cds-WP_152536574.1;Parent=gene-LPH40_RS02775;Dbxref=Genbank:WP_152536574.1;Name=WP_152536574.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02775;product=hypothetical protein;protein_id=WP_152536574.1;transl_table=11 NZ_CP087685.1 RefSeq gene 663431 663850 . + . ID=gene-LPH40_RS02780;Name=rnfB;gbkey=Gene;gene=rnfB;gene_biotype=protein_coding;locus_tag=LPH40_RS02780;old_locus_tag=LPH40_02780 NZ_CP087685.1 Protein Homology CDS 663431 663850 . + 0 ID=cds-WP_038270455.1;Parent=gene-LPH40_RS02780;Dbxref=Genbank:WP_038270455.1;Name=WP_038270455.1;gbkey=CDS;gene=rnfB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088821.1;locus_tag=LPH40_RS02780;product=Rnf electron transport complex subunit RnfB;protein_id=WP_038270455.1;transl_table=11 NZ_CP087685.1 RefSeq gene 663980 664162 . + . ID=gene-LPH40_RS02785;Name=LPH40_RS02785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02785;old_locus_tag=LPH40_02785 NZ_CP087685.1 GeneMarkS-2+ CDS 663980 664162 . + 0 ID=cds-WP_171898057.1;Parent=gene-LPH40_RS02785;Dbxref=Genbank:WP_171898057.1;Name=WP_171898057.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02785;product=hypothetical protein;protein_id=WP_171898057.1;transl_table=11 NZ_CP087685.1 RefSeq gene 665557 665940 . - . ID=gene-LPH40_RS02790;Name=LPH40_RS02790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02790;old_locus_tag=LPH40_02790 NZ_CP087685.1 GeneMarkS-2+ CDS 665557 665940 . - 0 ID=cds-WP_051482252.1;Parent=gene-LPH40_RS02790;Dbxref=Genbank:WP_051482252.1;Name=WP_051482252.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02790;product=hypothetical protein;protein_id=WP_051482252.1;transl_table=11 NZ_CP087685.1 RefSeq gene 666212 666364 . - . ID=gene-LPH40_RS02795;Name=LPH40_RS02795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02795;old_locus_tag=LPH40_02795 NZ_CP087685.1 GeneMarkS-2+ CDS 666212 666364 . - 0 ID=cds-WP_114867175.1;Parent=gene-LPH40_RS02795;Dbxref=Genbank:WP_114867175.1;Name=WP_114867175.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02795;product=hypothetical protein;protein_id=WP_114867175.1;transl_table=11 NZ_CP087685.1 RefSeq gene 667067 667273 . - . ID=gene-LPH40_RS02800;Name=LPH40_RS02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02800;old_locus_tag=LPH40_02800 NZ_CP087685.1 GeneMarkS-2+ CDS 667067 667273 . - 0 ID=cds-WP_160165120.1;Parent=gene-LPH40_RS02800;Dbxref=Genbank:WP_160165120.1;Name=WP_160165120.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02800;product=hypothetical protein;protein_id=WP_160165120.1;transl_table=11 NZ_CP087685.1 RefSeq gene 667325 667606 . + . ID=gene-LPH40_RS02805;Name=LPH40_RS02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02805;old_locus_tag=LPH40_02805 NZ_CP087685.1 Protein Homology CDS 667325 667606 . + 0 ID=cds-WP_038270378.1;Parent=gene-LPH40_RS02805;Dbxref=Genbank:WP_038270378.1;Name=WP_038270378.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164775.1;locus_tag=LPH40_RS02805;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_038270378.1;transl_table=11 NZ_CP087685.1 RefSeq gene 667675 668874 . - . ID=gene-LPH40_RS02810;Name=LPH40_RS02810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02810;old_locus_tag=LPH40_02810 NZ_CP087685.1 Protein Homology CDS 667675 668874 . - 0 ID=cds-WP_230428506.1;Parent=gene-LPH40_RS02810;Dbxref=Genbank:WP_230428506.1;Name=WP_230428506.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607328.1;locus_tag=LPH40_RS02810;product=alpha/beta hydrolase;protein_id=WP_230428506.1;transl_table=11 NZ_CP087685.1 RefSeq gene 669662 670045 . - . ID=gene-LPH40_RS02815;Name=LPH40_RS02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02815;old_locus_tag=LPH40_02815 NZ_CP087685.1 Protein Homology CDS 669662 670045 . - 0 ID=cds-WP_038270376.1;Parent=gene-LPH40_RS02815;Dbxref=Genbank:WP_038270376.1;Name=WP_038270376.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852211.1;locus_tag=LPH40_RS02815;product=hypothetical protein;protein_id=WP_038270376.1;transl_table=11 NZ_CP087685.1 RefSeq gene 670119 670388 . - . ID=gene-LPH40_RS02820;Name=LPH40_RS02820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02820;old_locus_tag=LPH40_02820 NZ_CP087685.1 Protein Homology CDS 670119 670388 . - 0 ID=cds-WP_201745725.1;Parent=gene-LPH40_RS02820;Dbxref=Genbank:WP_201745725.1;Name=WP_201745725.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023857.2;locus_tag=LPH40_RS02820;product=BrnA antitoxin family protein;protein_id=WP_201745725.1;transl_table=11 NZ_CP087685.1 RefSeq gene 670579 671889 . - . ID=gene-LPH40_RS02825;Name=LPH40_RS02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02825;old_locus_tag=LPH40_02825 NZ_CP087685.1 Protein Homology CDS 670579 671889 . - 0 ID=cds-WP_038270375.1;Parent=gene-LPH40_RS02825;Dbxref=Genbank:WP_038270375.1;Name=WP_038270375.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013696.2;locus_tag=LPH40_RS02825;product=M20 family metallopeptidase;protein_id=WP_038270375.1;transl_table=11 NZ_CP087685.1 RefSeq gene 672072 672197 . - . ID=gene-LPH40_RS11955;Name=LPH40_RS11955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11955 NZ_CP087685.1 GeneMarkS-2+ CDS 672072 672197 . - 0 ID=cds-WP_267903158.1;Parent=gene-LPH40_RS11955;Dbxref=Genbank:WP_267903158.1;Name=WP_267903158.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11955;product=hypothetical protein;protein_id=WP_267903158.1;transl_table=11 NZ_CP087685.1 RefSeq gene 672212 672460 . - . ID=gene-LPH40_RS02830;Name=LPH40_RS02830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02830;old_locus_tag=LPH40_02830 NZ_CP087685.1 Protein Homology CDS 672212 672460 . - 0 ID=cds-WP_114867176.1;Parent=gene-LPH40_RS02830;Dbxref=Genbank:WP_114867176.1;Name=WP_114867176.1;Ontology_term=GO:0004252,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;inference=COORDINATES: protein motif:HMM:NF013827.2;locus_tag=LPH40_RS02830;product=rhomboid family intramembrane serine protease;protein_id=WP_114867176.1;transl_table=11 NZ_CP087685.1 RefSeq gene 672457 672705 . - . ID=gene-LPH40_RS02835;Name=LPH40_RS02835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02835;old_locus_tag=LPH40_02835 NZ_CP087685.1 GeneMarkS-2+ CDS 672457 672705 . - 0 ID=cds-WP_230428507.1;Parent=gene-LPH40_RS02835;Dbxref=Genbank:WP_230428507.1;Name=WP_230428507.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02835;product=hypothetical protein;protein_id=WP_230428507.1;transl_table=11 NZ_CP087685.1 RefSeq gene 673034 673110 . - . ID=gene-LPH40_RS02840;Name=LPH40_RS02840;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS02840;old_locus_tag=LPH40_02840 NZ_CP087685.1 tRNAscan-SE tRNA 673034 673110 . - . ID=rna-LPH40_RS02840;Parent=gene-LPH40_RS02840;anticodon=(pos:complement(673074..673076));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS02840;product=tRNA-Asn NZ_CP087685.1 tRNAscan-SE exon 673034 673110 . - . ID=exon-LPH40_RS02840-1;Parent=rna-LPH40_RS02840;anticodon=(pos:complement(673074..673076));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS02840;product=tRNA-Asn NZ_CP087685.1 RefSeq gene 673215 673616 . - . ID=gene-LPH40_RS02845;Name=LPH40_RS02845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02845;old_locus_tag=LPH40_02845 NZ_CP087685.1 Protein Homology CDS 673215 673616 . - 0 ID=cds-WP_200866181.1;Parent=gene-LPH40_RS02845;Dbxref=Genbank:WP_200866181.1;Name=WP_200866181.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382713.1;locus_tag=LPH40_RS02845;product=type IV pilin protein;protein_id=WP_200866181.1;transl_table=11 NZ_CP087685.1 RefSeq gene 673667 678232 . - . ID=gene-LPH40_RS02850;Name=LPH40_RS02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02850;old_locus_tag=LPH40_02850 NZ_CP087685.1 Protein Homology CDS 673667 678232 . - 0 ID=cds-WP_038270373.1;Parent=gene-LPH40_RS02850;Dbxref=Genbank:WP_038270373.1;Name=WP_038270373.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338034.1;locus_tag=LPH40_RS02850;product=pilus assembly protein;protein_id=WP_038270373.1;transl_table=11 NZ_CP087685.1 RefSeq gene 678236 678727 . - . ID=gene-LPH40_RS02855;Name=LPH40_RS02855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02855;old_locus_tag=LPH40_02855 NZ_CP087685.1 Protein Homology CDS 678236 678727 . - 0 ID=cds-WP_230428235.1;Parent=gene-LPH40_RS02855;Dbxref=Genbank:WP_230428235.1;Name=WP_230428235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089766.1;locus_tag=LPH40_RS02855;product=PilX N-terminal domain-containing pilus assembly protein;protein_id=WP_230428235.1;transl_table=11 NZ_CP087685.1 RefSeq gene 678730 679986 . - . ID=gene-LPH40_RS02860;Name=LPH40_RS02860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02860;old_locus_tag=LPH40_02860 NZ_CP087685.1 Protein Homology CDS 678730 679986 . - 0 ID=cds-WP_038270371.1;Parent=gene-LPH40_RS02860;Dbxref=Genbank:WP_038270371.1;Name=WP_038270371.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851179.1;locus_tag=LPH40_RS02860;product=PilW family protein;protein_id=WP_038270371.1;transl_table=11 NZ_CP087685.1 RefSeq gene 679983 680429 . - . ID=gene-LPH40_RS02865;Name=pilV;gbkey=Gene;gene=pilV;gene_biotype=protein_coding;locus_tag=LPH40_RS02865;old_locus_tag=LPH40_02865 NZ_CP087685.1 Protein Homology CDS 679983 680429 . - 0 ID=cds-WP_230428236.1;Parent=gene-LPH40_RS02865;Dbxref=Genbank:WP_230428236.1;Name=WP_230428236.1;gbkey=CDS;gene=pilV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914248.1;locus_tag=LPH40_RS02865;product=type IV pilus modification protein PilV;protein_id=WP_230428236.1;transl_table=11 NZ_CP087685.1 RefSeq gene 680462 680974 . - . ID=gene-LPH40_RS02870;Name=LPH40_RS02870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02870;old_locus_tag=LPH40_02870 NZ_CP087685.1 Protein Homology CDS 680462 680974 . - 0 ID=cds-WP_038270369.1;Parent=gene-LPH40_RS02870;Dbxref=Genbank:WP_038270369.1;Name=WP_038270369.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851181.1;locus_tag=LPH40_RS02870;product=Tfp pilus assembly protein FimT/FimU;protein_id=WP_038270369.1;transl_table=11 NZ_CP087685.1 RefSeq gene 681119 682492 . - . ID=gene-LPH40_RS02875;Name=ppnN;gbkey=Gene;gene=ppnN;gene_biotype=protein_coding;locus_tag=LPH40_RS02875;old_locus_tag=LPH40_02875 NZ_CP087685.1 Protein Homology CDS 681119 682492 . - 0 ID=cds-WP_038270452.1;Parent=gene-LPH40_RS02875;Dbxref=Genbank:WP_038270452.1;Name=WP_038270452.1;gbkey=CDS;gene=ppnN;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083569.1;locus_tag=LPH40_RS02875;product=nucleotide 5'-monophosphate nucleosidase PpnN;protein_id=WP_038270452.1;transl_table=11 NZ_CP087685.1 RefSeq gene 683993 685549 . - . ID=gene-LPH40_RS02880;Name=LPH40_RS02880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02880;old_locus_tag=LPH40_02880 NZ_CP087685.1 Protein Homology CDS 683993 685549 . - 0 ID=cds-WP_038270368.1;Parent=gene-LPH40_RS02880;Dbxref=Genbank:WP_038270368.1;Name=WP_038270368.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098186.1;locus_tag=LPH40_RS02880;product=EAL domain-containing protein;protein_id=WP_038270368.1;transl_table=11 NZ_CP087685.1 RefSeq gene 688736 688882 . + . ID=gene-LPH40_RS02885;Name=LPH40_RS02885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02885;old_locus_tag=LPH40_02885 NZ_CP087685.1 GeneMarkS-2+ CDS 688736 688882 . + 0 ID=cds-WP_152536571.1;Parent=gene-LPH40_RS02885;Dbxref=Genbank:WP_152536571.1;Name=WP_152536571.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS02885;product=AlpA family phage regulatory protein;protein_id=WP_152536571.1;transl_table=11 NZ_CP087685.1 RefSeq gene 689536 690711 . + . ID=gene-LPH40_RS02890;Name=moeB;gbkey=Gene;gene=moeB;gene_biotype=protein_coding;locus_tag=LPH40_RS02890;old_locus_tag=LPH40_02890 NZ_CP087685.1 Protein Homology CDS 689536 690711 . + 0 ID=cds-WP_268746639.1;Parent=gene-LPH40_RS02890;Dbxref=Genbank:WP_268746639.1;Name=WP_268746639.1;gbkey=CDS;gene=moeB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507733.1;locus_tag=LPH40_RS02890;product=molybdopterin-synthase adenylyltransferase MoeB;protein_id=WP_268746639.1;transl_table=11 NZ_CP087685.1 RefSeq gene 690932 692332 . - . ID=gene-LPH40_RS02895;Name=der;gbkey=Gene;gene=der;gene_biotype=protein_coding;locus_tag=LPH40_RS02895;old_locus_tag=LPH40_02895 NZ_CP087685.1 Protein Homology CDS 690932 692332 . - 0 ID=cds-WP_038270360.1;Parent=gene-LPH40_RS02895;Dbxref=Genbank:WP_038270360.1;Name=WP_038270360.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=der;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014160877.1;locus_tag=LPH40_RS02895;product=ribosome biogenesis GTPase Der;protein_id=WP_038270360.1;transl_table=11 NZ_CP087685.1 RefSeq gene 692350 693573 . - . ID=gene-LPH40_RS02900;Name=bamB;gbkey=Gene;gene=bamB;gene_biotype=protein_coding;locus_tag=LPH40_RS02900;old_locus_tag=LPH40_02900 NZ_CP087685.1 Protein Homology CDS 692350 693573 . - 0 ID=cds-WP_038270359.1;Parent=gene-LPH40_RS02900;Dbxref=Genbank:WP_038270359.1;Name=WP_038270359.1;Ontology_term=GO:0005515,GO:0009279;gbkey=CDS;gene=bamB;go_component=cell outer membrane|0009279||IEA;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083573.1;locus_tag=LPH40_RS02900;product=outer membrane protein assembly factor BamB;protein_id=WP_038270359.1;transl_table=11 NZ_CP087685.1 RefSeq gene 693574 694212 . - . ID=gene-LPH40_RS02905;Name=LPH40_RS02905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02905;old_locus_tag=LPH40_02905 NZ_CP087685.1 Protein Homology CDS 693574 694212 . - 0 ID=cds-WP_038270358.1;Parent=gene-LPH40_RS02905;Dbxref=Genbank:WP_038270358.1;Name=WP_038270358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503367.1;locus_tag=LPH40_RS02905;product=YfgM family protein;protein_id=WP_038270358.1;transl_table=11 NZ_CP087685.1 RefSeq gene 694289 695155 . - . ID=gene-LPH40_RS02910;Name=LPH40_RS02910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02910;old_locus_tag=LPH40_02910 NZ_CP087685.1 Protein Homology CDS 694289 695155 . - 0 ID=cds-WP_051482248.1;Parent=gene-LPH40_RS02910;Dbxref=Genbank:WP_051482248.1;Name=WP_051482248.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083575.1;locus_tag=LPH40_RS02910;product=helix-turn-helix domain-containing protein;protein_id=WP_051482248.1;transl_table=11 NZ_CP087685.1 RefSeq gene 695162 695968 . - . ID=gene-LPH40_RS02915;Name=pilW;gbkey=Gene;gene=pilW;gene_biotype=protein_coding;locus_tag=LPH40_RS02915;old_locus_tag=LPH40_02915 NZ_CP087685.1 Protein Homology CDS 695162 695968 . - 0 ID=cds-WP_038270357.1;Parent=gene-LPH40_RS02915;Dbxref=Genbank:WP_038270357.1;Name=WP_038270357.1;Ontology_term=GO:0005515;gbkey=CDS;gene=pilW;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083576.1;locus_tag=LPH40_RS02915;product=type IV pilus biogenesis/stability protein PilW;protein_id=WP_038270357.1;transl_table=11 NZ_CP087685.1 RefSeq gene 695955 697169 . - . ID=gene-LPH40_RS02920;Name=rlmN;gbkey=Gene;gene=rlmN;gene_biotype=protein_coding;locus_tag=LPH40_RS02920;old_locus_tag=LPH40_02920 NZ_CP087685.1 Protein Homology CDS 695955 697169 . - 0 ID=cds-WP_038270356.1;Parent=gene-LPH40_RS02920;Dbxref=Genbank:WP_038270356.1;Name=WP_038270356.1;Ontology_term=GO:0031167,GO:0008757,GO:0016433;gbkey=CDS;gene=rlmN;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,rRNA (adenine) methyltransferase activity|0016433||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089782.1;locus_tag=LPH40_RS02920;product=23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN;protein_id=WP_038270356.1;transl_table=11 NZ_CP087685.1 RefSeq gene 697180 697605 . - . ID=gene-LPH40_RS02925;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=LPH40_RS02925;old_locus_tag=LPH40_02925 NZ_CP087685.1 Protein Homology CDS 697180 697605 . - 0 ID=cds-WP_038270355.1;Parent=gene-LPH40_RS02925;Dbxref=Genbank:WP_038270355.1;Name=WP_038270355.1;Ontology_term=GO:0006165,GO:0004550;gbkey=CDS;gene=ndk;go_function=nucleoside diphosphate kinase activity|0004550||IEA;go_process=nucleoside diphosphate phosphorylation|0006165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005409295.1;locus_tag=LPH40_RS02925;product=nucleoside-diphosphate kinase;protein_id=WP_038270355.1;transl_table=11 NZ_CP087685.1 RefSeq gene 700854 701858 . + . ID=gene-LPH40_RS02930;Name=gap;gbkey=Gene;gene=gap;gene_biotype=protein_coding;locus_tag=LPH40_RS02930;old_locus_tag=LPH40_02930 NZ_CP087685.1 Protein Homology CDS 700854 701858 . + 0 ID=cds-WP_038270354.1;Parent=gene-LPH40_RS02930;Dbxref=Genbank:WP_038270354.1;Name=WP_038270354.1;Ontology_term=GO:0006094,GO:0006096,GO:0019682;gbkey=CDS;gene=gap;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA,glyceraldehyde-3-phosphate metabolic process|0019682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851191.1;locus_tag=LPH40_RS02930;product=type I glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_038270354.1;transl_table=11 NZ_CP087685.1 RefSeq gene 702744 704036 . - . ID=gene-LPH40_RS02935;Name=LPH40_RS02935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02935;old_locus_tag=LPH40_02935 NZ_CP087685.1 Protein Homology CDS 702744 704036 . - 0 ID=cds-WP_038270352.1;Parent=gene-LPH40_RS02935;Dbxref=Genbank:WP_038270352.1;Name=WP_038270352.1;Ontology_term=GO:0006164,GO:0004019,GO:0005525;gbkey=CDS;go_function=adenylosuccinate synthase activity|0004019||IEA,GTP binding|0005525||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903917.1;locus_tag=LPH40_RS02935;product=adenylosuccinate synthase;protein_id=WP_038270352.1;transl_table=11 NZ_CP087685.1 RefSeq gene 704260 704445 . - . ID=gene-LPH40_RS02940;Name=LPH40_RS02940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02940;old_locus_tag=LPH40_02940 NZ_CP087685.1 Protein Homology CDS 704260 704445 . - 0 ID=cds-WP_038270351.1;Parent=gene-LPH40_RS02940;Dbxref=Genbank:WP_038270351.1;Name=WP_038270351.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089787.1;locus_tag=LPH40_RS02940;product=DUF2065 family protein;protein_id=WP_038270351.1;transl_table=11 NZ_CP087685.1 RefSeq gene 704602 705465 . - . ID=gene-LPH40_RS02945;Name=LPH40_RS02945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02945;old_locus_tag=LPH40_02945 NZ_CP087685.1 Protein Homology CDS 704602 705465 . - 0 ID=cds-WP_038270350.1;Parent=gene-LPH40_RS02945;Dbxref=Genbank:WP_038270350.1;Name=WP_038270350.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083581.1;locus_tag=LPH40_RS02945;product=protease modulator HflC;protein_id=WP_038270350.1;transl_table=11 NZ_CP087685.1 RefSeq gene 705462 706601 . - . ID=gene-LPH40_RS02950;Name=hflK;gbkey=Gene;gene=hflK;gene_biotype=protein_coding;locus_tag=LPH40_RS02950;old_locus_tag=LPH40_02950 NZ_CP087685.1 Protein Homology CDS 705462 706601 . - 0 ID=cds-WP_038270349.1;Parent=gene-LPH40_RS02950;Dbxref=Genbank:WP_038270349.1;Name=WP_038270349.1;Ontology_term=GO:0045861,GO:0003674,GO:0030288;gbkey=CDS;gene=hflK;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=molecular_function|0003674||IEA;go_process=negative regulation of proteolysis|0045861||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851193.1;locus_tag=LPH40_RS02950;product=FtsH protease activity modulator HflK;protein_id=WP_038270349.1;transl_table=11 NZ_CP087685.1 RefSeq gene 706732 707742 . + . ID=gene-LPH40_RS02955;Name=LPH40_RS02955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02955;old_locus_tag=LPH40_02955 NZ_CP087685.1 Protein Homology CDS 706732 707742 . + 0 ID=cds-WP_038270348.1;Parent=gene-LPH40_RS02955;Dbxref=Genbank:WP_038270348.1;Name=WP_038270348.1;Ontology_term=GO:0008152,GO:0016655;gbkey=CDS;go_function=oxidoreductase activity%2C acting on NAD(P)H%2C quinone or similar compound as acceptor|0016655||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005418337.1;locus_tag=LPH40_RS02955;product=acryloyl-CoA reductase;protein_id=WP_038270348.1;transl_table=11 NZ_CP087685.1 RefSeq gene 707835 708221 . + . ID=gene-LPH40_RS02960;Name=pilH;gbkey=Gene;gene=pilH;gene_biotype=protein_coding;locus_tag=LPH40_RS02960;old_locus_tag=LPH40_02960 NZ_CP087685.1 Protein Homology CDS 707835 708221 . + 0 ID=cds-WP_038270450.1;Parent=gene-LPH40_RS02960;Dbxref=Genbank:WP_038270450.1;Name=WP_038270450.1;gbkey=CDS;gene=pilH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083584.1;locus_tag=LPH40_RS02960;product=twitching motility response regulator PilH;protein_id=WP_038270450.1;transl_table=11 NZ_CP087685.1 RefSeq gene 709557 709907 . - . ID=gene-LPH40_RS02965;Name=LPH40_RS02965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02965;old_locus_tag=LPH40_02965 NZ_CP087685.1 Protein Homology CDS 709557 709907 . - 0 ID=cds-WP_038270449.1;Parent=gene-LPH40_RS02965;Dbxref=Genbank:WP_038270449.1;Name=WP_038270449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083585.1;locus_tag=LPH40_RS02965;product=DMT family protein;protein_id=WP_038270449.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 711161 711532 . - . ID=gene-LPH40_RS02970;Name=LPH40_RS02970;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS02970;old_locus_tag=LPH40_02970;partial=true;pseudo=true;start_range=.,711161 NZ_CP087685.1 Protein Homology CDS 711161 711532 . - 0 ID=cds-LPH40_RS02970;Parent=gene-LPH40_RS02970;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970417.1;locus_tag=LPH40_RS02970;partial=true;product=H-NS family nucleoid-associated regulatory protein;pseudo=true;start_range=.,711161;transl_table=11 NZ_CP087685.1 RefSeq gene 711681 713375 . - . ID=gene-LPH40_RS02975;Name=LPH40_RS02975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02975;old_locus_tag=LPH40_02975 NZ_CP087685.1 Protein Homology CDS 711681 713375 . - 0 ID=cds-WP_038270346.1;Parent=gene-LPH40_RS02975;Dbxref=Genbank:WP_038270346.1;Name=WP_038270346.1;Ontology_term=GO:0006418,GO:0006433,GO:0000166,GO:0002161,GO:0004812,GO:0004827,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA editing activity|0002161||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,proline-tRNA ligase activity|0004827||IEA,ATP binding|0005524||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA,prolyl-tRNA aminoacylation|0006433||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157647.1;locus_tag=LPH40_RS02975;product=proline--tRNA ligase;protein_id=WP_038270346.1;transl_table=11 NZ_CP087685.1 RefSeq gene 713468 713839 . - . ID=gene-LPH40_RS02980;Name=LPH40_RS02980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02980;old_locus_tag=LPH40_02980 NZ_CP087685.1 Protein Homology CDS 713468 713839 . - 0 ID=cds-WP_038270345.1;Parent=gene-LPH40_RS02980;Dbxref=Genbank:WP_038270345.1;Name=WP_038270345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851197.1;locus_tag=LPH40_RS02980;product=DUF4124 domain-containing protein;protein_id=WP_038270345.1;transl_table=11 NZ_CP087685.1 RefSeq gene 714000 714770 . + . ID=gene-LPH40_RS02985;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=LPH40_RS02985;old_locus_tag=LPH40_02985 NZ_CP087685.1 Protein Homology CDS 714000 714770 . + 0 ID=cds-WP_038270343.1;Parent=gene-LPH40_RS02985;Dbxref=Genbank:WP_038270343.1;Name=WP_038270343.1;Ontology_term=GO:0008654,GO:0003882;gbkey=CDS;gene=pssA;go_function=CDP-diacylglycerol-serine O-phosphatidyltransferase activity|0003882||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083589.1;locus_tag=LPH40_RS02985;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=WP_038270343.1;transl_table=11 NZ_CP087685.1 RefSeq gene 714779 715192 . + . ID=gene-LPH40_RS02990;Name=LPH40_RS02990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS02990;old_locus_tag=LPH40_02990 NZ_CP087685.1 Protein Homology CDS 714779 715192 . + 0 ID=cds-WP_230428240.1;Parent=gene-LPH40_RS02990;Dbxref=Genbank:WP_230428240.1;Name=WP_230428240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851198.1;locus_tag=LPH40_RS02990;product=hypothetical protein;protein_id=WP_230428240.1;transl_table=11 NZ_CP087685.1 RefSeq gene 715193 715663 . + . ID=gene-LPH40_RS02995;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=LPH40_RS02995;old_locus_tag=LPH40_02995 NZ_CP087685.1 Protein Homology CDS 715193 715663 . + 0 ID=cds-WP_038270341.1;Parent=gene-LPH40_RS02995;Dbxref=Genbank:WP_038270341.1;Name=WP_038270341.1;Ontology_term=GO:0036211,GO:0042254,GO:0008999;gbkey=CDS;gene=rimI;go_function=peptide-alanine-alpha-N-acetyltransferase activity|0008999||IEA;go_process=protein modification process|0036211||IEA,ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089802.1;locus_tag=LPH40_RS02995;product=ribosomal protein S18-alanine N-acetyltransferase;protein_id=WP_038270341.1;transl_table=11 NZ_CP087685.1 RefSeq gene 716886 717284 . - . ID=gene-LPH40_RS03000;Name=LPH40_RS03000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03000;old_locus_tag=LPH40_03000 NZ_CP087685.1 GeneMarkS-2+ CDS 716886 717284 . - 0 ID=cds-WP_038270340.1;Parent=gene-LPH40_RS03000;Dbxref=Genbank:WP_038270340.1;Name=WP_038270340.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03000;product=hypothetical protein;protein_id=WP_038270340.1;transl_table=11 NZ_CP087685.1 RefSeq gene 717804 718019 . - . ID=gene-LPH40_RS03005;Name=LPH40_RS03005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03005;old_locus_tag=LPH40_03005 NZ_CP087685.1 GeneMarkS-2+ CDS 717804 718019 . - 0 ID=cds-WP_152536570.1;Parent=gene-LPH40_RS03005;Dbxref=Genbank:WP_152536570.1;Name=WP_152536570.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03005;product=hypothetical protein;protein_id=WP_152536570.1;transl_table=11 NZ_CP087685.1 RefSeq gene 718262 720436 . - . ID=gene-LPH40_RS03010;Name=LPH40_RS03010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03010;old_locus_tag=LPH40_03010 NZ_CP087685.1 Protein Homology CDS 718262 720436 . - 0 ID=cds-WP_038270448.1;Parent=gene-LPH40_RS03010;Dbxref=Genbank:WP_038270448.1;Name=WP_038270448.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083592.1;locus_tag=LPH40_RS03010;product=glycoside hydrolase family 3 C-terminal domain-containing protein;protein_id=WP_038270448.1;transl_table=11 NZ_CP087685.1 RefSeq gene 720997 722292 . - . ID=gene-LPH40_RS03015;Name=LPH40_RS03015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03015;old_locus_tag=LPH40_03015 NZ_CP087685.1 Protein Homology CDS 720997 722292 . - 0 ID=cds-WP_051482247.1;Parent=gene-LPH40_RS03015;Dbxref=Genbank:WP_051482247.1;Name=WP_051482247.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083593.1;locus_tag=LPH40_RS03015;product=mechanosensitive ion channel family protein;protein_id=WP_051482247.1;transl_table=11 NZ_CP087685.1 RefSeq gene 722526 722888 . - . ID=gene-LPH40_RS03020;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=LPH40_RS03020;old_locus_tag=LPH40_03020 NZ_CP087685.1 Protein Homology CDS 722526 722888 . - 0 ID=cds-WP_038270338.1;Parent=gene-LPH40_RS03020;Dbxref=Genbank:WP_038270338.1;Name=WP_038270338.1;Ontology_term=GO:0006760,GO:0004150;gbkey=CDS;gene=folB;go_function=dihydroneopterin aldolase activity|0004150||IEA;go_process=folic acid-containing compound metabolic process|0006760||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996916.1;locus_tag=LPH40_RS03020;product=dihydroneopterin aldolase;protein_id=WP_038270338.1;transl_table=11 NZ_CP087685.1 RefSeq gene 722962 724017 . - . ID=gene-LPH40_RS03025;Name=tsaD;gbkey=Gene;gene=tsaD;gene_biotype=protein_coding;locus_tag=LPH40_RS03025;old_locus_tag=LPH40_03025 NZ_CP087685.1 Protein Homology CDS 722962 724017 . - 0 ID=cds-WP_038270337.1;Parent=gene-LPH40_RS03025;Dbxref=Genbank:WP_038270337.1;Name=WP_038270337.1;Ontology_term=GO:0006400;gbkey=CDS;gene=tsaD;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083595.1;locus_tag=LPH40_RS03025;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=WP_038270337.1;transl_table=11 NZ_CP087685.1 RefSeq gene 724189 724404 . + . ID=gene-LPH40_RS03030;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=LPH40_RS03030;old_locus_tag=LPH40_03030 NZ_CP087685.1 Protein Homology CDS 724189 724404 . + 0 ID=cds-WP_038270336.1;Parent=gene-LPH40_RS03030;Dbxref=Genbank:WP_038270336.1;Name=WP_038270336.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsU;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011235429.1;locus_tag=LPH40_RS03030;product=30S ribosomal protein S21;protein_id=WP_038270336.1;transl_table=11 NZ_CP087685.1 RefSeq gene 724600 725046 . + . ID=gene-LPH40_RS03035;Name=LPH40_RS03035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03035;old_locus_tag=LPH40_03035 NZ_CP087685.1 Protein Homology CDS 724600 725046 . + 0 ID=cds-WP_038270335.1;Parent=gene-LPH40_RS03035;Dbxref=Genbank:WP_038270335.1;Name=WP_038270335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038898.1;locus_tag=LPH40_RS03035;product=GatB/YqeY domain-containing protein;protein_id=WP_038270335.1;transl_table=11 NZ_CP087685.1 RefSeq gene 725301 726230 . + . ID=gene-LPH40_RS03040;Name=LPH40_RS03040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03040;old_locus_tag=LPH40_03040 NZ_CP087685.1 Protein Homology CDS 725301 726230 . + 0 ID=cds-WP_230428241.1;Parent=gene-LPH40_RS03040;Dbxref=Genbank:WP_230428241.1;Name=WP_230428241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083598.1;locus_tag=LPH40_RS03040;product=YihY/virulence factor BrkB family protein;protein_id=WP_230428241.1;transl_table=11 NZ_CP087685.1 RefSeq gene 726448 728181 . + . ID=gene-LPH40_RS03045;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=LPH40_RS03045;old_locus_tag=LPH40_03045 NZ_CP087685.1 Protein Homology CDS 726448 728181 . + 0 ID=cds-WP_038270334.1;Parent=gene-LPH40_RS03045;Dbxref=Genbank:WP_038270334.1;Name=WP_038270334.1;Ontology_term=GO:0006269,GO:0003896;gbkey=CDS;gene=dnaG;go_function=DNA primase activity|0003896||IEA;go_process=DNA replication%2C synthesis of RNA primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083599.1;locus_tag=LPH40_RS03045;product=DNA primase;protein_id=WP_038270334.1;transl_table=11 NZ_CP087685.1 RefSeq gene 728290 728442 . - . ID=gene-LPH40_RS03050;Name=LPH40_RS03050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03050;old_locus_tag=LPH40_03050 NZ_CP087685.1 GeneMarkS-2+ CDS 728290 728442 . - 0 ID=cds-WP_160165119.1;Parent=gene-LPH40_RS03050;Dbxref=Genbank:WP_160165119.1;Name=WP_160165119.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03050;product=hypothetical protein;protein_id=WP_160165119.1;transl_table=11 NZ_CP087685.1 RefSeq gene 728827 730119 . - . ID=gene-LPH40_RS03055;Name=LPH40_RS03055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03055;old_locus_tag=LPH40_03055 NZ_CP087685.1 Protein Homology CDS 728827 730119 . - 0 ID=cds-WP_038270333.1;Parent=gene-LPH40_RS03055;Dbxref=Genbank:WP_038270333.1;Name=WP_038270333.1;Ontology_term=GO:0006436,GO:0004830;gbkey=CDS;go_function=tryptophan-tRNA ligase activity|0004830||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089825.1;locus_tag=LPH40_RS03055;product=tryptophan--tRNA ligase;protein_id=WP_038270333.1;transl_table=11 NZ_CP087685.1 RefSeq gene 730861 732792 . - . ID=gene-LPH40_RS03060;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=LPH40_RS03060;old_locus_tag=LPH40_03060 NZ_CP087685.1 Protein Homology CDS 730861 732792 . - 0 ID=cds-WP_038270331.1;Parent=gene-LPH40_RS03060;Dbxref=Genbank:WP_038270331.1;Name=WP_038270331.1;Ontology_term=GO:0006281,GO:0006310,GO:0008854,GO:0009338;gbkey=CDS;gene=recD;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851823.1;locus_tag=LPH40_RS03060;product=exodeoxyribonuclease V subunit alpha;protein_id=WP_038270331.1;transl_table=11 NZ_CP087685.1 RefSeq gene 732789 736523 . - . ID=gene-LPH40_RS03065;Name=LPH40_RS03065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03065;old_locus_tag=LPH40_03065 NZ_CP087685.1 Protein Homology CDS 732789 736523 . - 0 ID=cds-WP_160199304.1;Parent=gene-LPH40_RS03065;Dbxref=Genbank:WP_160199304.1;Name=WP_160199304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083603.1;locus_tag=LPH40_RS03065;product=exodeoxyribonuclease V subunit beta;protein_id=WP_160199304.1;transl_table=11 NZ_CP087685.1 RefSeq gene 736520 739870 . - . ID=gene-LPH40_RS03070;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=LPH40_RS03070;old_locus_tag=LPH40_03070 NZ_CP087685.1 Protein Homology CDS 736520 739870 . - 0 ID=cds-WP_038270568.1;Parent=gene-LPH40_RS03070;Dbxref=Genbank:WP_038270568.1;Name=WP_038270568.1;Ontology_term=GO:0006281,GO:0006310,GO:0008854,GO:0009338;gbkey=CDS;gene=recC;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851826.1;locus_tag=LPH40_RS03070;product=exodeoxyribonuclease V subunit gamma;protein_id=WP_038270568.1;transl_table=11 NZ_CP087685.1 RefSeq gene 740113 740907 . + . ID=gene-LPH40_RS03075;Name=LPH40_RS03075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03075;old_locus_tag=LPH40_03075 NZ_CP087685.1 Protein Homology CDS 740113 740907 . + 0 ID=cds-WP_038270567.1;Parent=gene-LPH40_RS03075;Dbxref=Genbank:WP_038270567.1;Name=WP_038270567.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089839.1;locus_tag=LPH40_RS03075;product=ABC transporter ATP-binding protein;protein_id=WP_038270567.1;transl_table=11 NZ_CP087685.1 RefSeq gene 740907 741656 . + . ID=gene-LPH40_RS03080;Name=LPH40_RS03080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03080;old_locus_tag=LPH40_03080 NZ_CP087685.1 Protein Homology CDS 740907 741656 . + 0 ID=cds-WP_038270565.1;Parent=gene-LPH40_RS03080;Dbxref=Genbank:WP_038270565.1;Name=WP_038270565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302478.1;locus_tag=LPH40_RS03080;product=MlaE family lipid ABC transporter permease subunit;protein_id=WP_038270565.1;transl_table=11 NZ_CP087685.1 RefSeq gene 741781 742317 . + . ID=gene-LPH40_RS03085;Name=mlaD;gbkey=Gene;gene=mlaD;gene_biotype=protein_coding;locus_tag=LPH40_RS03085;old_locus_tag=LPH40_03085 NZ_CP087685.1 Protein Homology CDS 741781 742317 . + 0 ID=cds-WP_038270564.1;Parent=gene-LPH40_RS03085;Dbxref=Genbank:WP_038270564.1;Name=WP_038270564.1;Ontology_term=GO:0015914;gbkey=CDS;gene=mlaD;go_process=phospholipid transport|0015914||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851827.1;locus_tag=LPH40_RS03085;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_038270564.1;transl_table=11 NZ_CP087685.1 RefSeq gene 742314 742970 . + . ID=gene-LPH40_RS03090;Name=LPH40_RS03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03090;old_locus_tag=LPH40_03090 NZ_CP087685.1 Protein Homology CDS 742314 742970 . + 0 ID=cds-WP_038270563.1;Parent=gene-LPH40_RS03090;Dbxref=Genbank:WP_038270563.1;Name=WP_038270563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851828.1;locus_tag=LPH40_RS03090;product=phospholipid-binding protein MlaC;protein_id=WP_038270563.1;transl_table=11 NZ_CP087685.1 RefSeq gene 742960 743262 . + . ID=gene-LPH40_RS03095;Name=LPH40_RS03095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03095;old_locus_tag=LPH40_03095 NZ_CP087685.1 Protein Homology CDS 742960 743262 . + 0 ID=cds-WP_038270562.1;Parent=gene-LPH40_RS03095;Dbxref=Genbank:WP_038270562.1;Name=WP_038270562.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083609.1;locus_tag=LPH40_RS03095;product=lipid asymmetry maintenance protein MlaB;protein_id=WP_038270562.1;transl_table=11 NZ_CP087685.1 RefSeq gene 743277 744311 . + . ID=gene-LPH40_RS03100;Name=LPH40_RS03100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03100;old_locus_tag=LPH40_03100 NZ_CP087685.1 Protein Homology CDS 743277 744311 . + 0 ID=cds-WP_038270561.1;Parent=gene-LPH40_RS03100;Dbxref=Genbank:WP_038270561.1;Name=WP_038270561.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089845.1;locus_tag=LPH40_RS03100;product=VacJ family lipoprotein;protein_id=WP_038270561.1;transl_table=11 NZ_CP087685.1 RefSeq gene 745040 746410 . - . ID=gene-LPH40_RS03105;Name=LPH40_RS03105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03105;old_locus_tag=LPH40_03105 NZ_CP087685.1 Protein Homology CDS 745040 746410 . - 0 ID=cds-WP_038270560.1;Parent=gene-LPH40_RS03105;Dbxref=Genbank:WP_038270560.1;Name=WP_038270560.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851830.1;locus_tag=LPH40_RS03105;product=DNA recombination protein RmuC;protein_id=WP_038270560.1;transl_table=11 NZ_CP087685.1 RefSeq gene 746790 748091 . - . ID=gene-LPH40_RS03110;Name=LPH40_RS03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03110;old_locus_tag=LPH40_03110 NZ_CP087685.1 Protein Homology CDS 746790 748091 . - 0 ID=cds-WP_038270559.1;Parent=gene-LPH40_RS03110;Dbxref=Genbank:WP_038270559.1;Name=WP_038270559.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892942.1;locus_tag=LPH40_RS03110;product=AAA-associated domain-containing protein;protein_id=WP_038270559.1;transl_table=11 NZ_CP087685.1 RefSeq gene 748123 749880 . - . ID=gene-LPH40_RS03115;Name=LPH40_RS03115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03115;old_locus_tag=LPH40_03115 NZ_CP087685.1 Protein Homology CDS 748123 749880 . - 0 ID=cds-WP_038270558.1;Parent=gene-LPH40_RS03115;Dbxref=Genbank:WP_038270558.1;Name=WP_038270558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098200.1;locus_tag=LPH40_RS03115;product=ABC transporter permease subunit;protein_id=WP_038270558.1;transl_table=11 NZ_CP087685.1 RefSeq gene 749994 750191 . + . ID=gene-LPH40_RS03120;Name=LPH40_RS03120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03120;old_locus_tag=LPH40_03120 NZ_CP087685.1 GeneMarkS-2+ CDS 749994 750191 . + 0 ID=cds-WP_160165136.1;Parent=gene-LPH40_RS03120;Dbxref=Genbank:WP_160165136.1;Name=WP_160165136.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03120;product=hypothetical protein;protein_id=WP_160165136.1;transl_table=11 NZ_CP087685.1 RefSeq gene 750648 752081 . + . ID=gene-LPH40_RS03125;Name=LPH40_RS03125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03125;old_locus_tag=LPH40_03125 NZ_CP087685.1 Protein Homology CDS 750648 752081 . + 0 ID=cds-WP_038270582.1;Parent=gene-LPH40_RS03125;Dbxref=Genbank:WP_038270582.1;Name=WP_038270582.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892938.1;locus_tag=LPH40_RS03125;product=amino acid permease;protein_id=WP_038270582.1;transl_table=11 NZ_CP087685.1 RefSeq gene 752151 752345 . + . ID=gene-LPH40_RS03130;Name=LPH40_RS03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03130;old_locus_tag=LPH40_03130 NZ_CP087685.1 GeneMarkS-2+ CDS 752151 752345 . + 0 ID=cds-WP_152536581.1;Parent=gene-LPH40_RS03130;Dbxref=Genbank:WP_152536581.1;Name=WP_152536581.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03130;product=hypothetical protein;protein_id=WP_152536581.1;transl_table=11 NZ_CP087685.1 RefSeq gene 752314 753483 . - . ID=gene-LPH40_RS03135;Name=LPH40_RS03135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03135;old_locus_tag=LPH40_03135 NZ_CP087685.1 Protein Homology CDS 752314 753483 . - 0 ID=cds-WP_038270556.1;Parent=gene-LPH40_RS03135;Dbxref=Genbank:WP_038270556.1;Name=WP_038270556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008264547.1;locus_tag=LPH40_RS03135;product=class I SAM-dependent rRNA methyltransferase;protein_id=WP_038270556.1;transl_table=11 NZ_CP087685.1 RefSeq gene 753756 754712 . + . ID=gene-LPH40_RS03140;Name=LPH40_RS03140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03140;old_locus_tag=LPH40_03140 NZ_CP087685.1 Protein Homology CDS 753756 754712 . + 0 ID=cds-WP_038270555.1;Parent=gene-LPH40_RS03140;Dbxref=Genbank:WP_038270555.1;Name=WP_038270555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449013.1;locus_tag=LPH40_RS03140;product=TerC family protein;protein_id=WP_038270555.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 756242 757329 . - . ID=gene-LPH40_RS03145;Name=LPH40_RS03145;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS03145;old_locus_tag=LPH40_03145;pseudo=true NZ_CP087685.1 Protein Homology CDS 756242 757329 . - 0 ID=cds-LPH40_RS03145;Parent=gene-LPH40_RS03145;Note=frameshifted%3B internal stop;Ontology_term=GO:0006629,GO:0008081;gbkey=CDS;go_function=phosphoric diester hydrolase activity|0008081||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091577.1;locus_tag=LPH40_RS03145;product=glycerophosphodiester phosphodiesterase family protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 757526 759154 . - . ID=gene-LPH40_RS03150;Name=LPH40_RS03150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS03150;old_locus_tag=LPH40_03150;pseudo=true NZ_CP087685.1 Protein Homology CDS 757526 759154 . - 0 ID=cds-LPH40_RS03150;Parent=gene-LPH40_RS03150;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019463570.1;locus_tag=LPH40_RS03150;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 759776 760162 . - . ID=gene-LPH40_RS03155;Name=erpA;gbkey=Gene;gene=erpA;gene_biotype=protein_coding;locus_tag=LPH40_RS03155;old_locus_tag=LPH40_03155 NZ_CP087685.1 Protein Homology CDS 759776 760162 . - 0 ID=cds-WP_038270552.1;Parent=gene-LPH40_RS03155;Dbxref=Genbank:WP_038270552.1;Name=WP_038270552.1;Ontology_term=GO:0016226,GO:0051536;gbkey=CDS;gene=erpA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411302.1;locus_tag=LPH40_RS03155;product=iron-sulfur cluster insertion protein ErpA;protein_id=WP_038270552.1;transl_table=11 NZ_CP087685.1 RefSeq gene 760196 760630 . - . ID=gene-LPH40_RS03160;Name=LPH40_RS03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03160;old_locus_tag=LPH40_03160 NZ_CP087685.1 Protein Homology CDS 760196 760630 . - 0 ID=cds-WP_038270551.1;Parent=gene-LPH40_RS03160;Dbxref=Genbank:WP_038270551.1;Name=WP_038270551.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851837.1;locus_tag=LPH40_RS03160;product=polymer-forming cytoskeletal protein;protein_id=WP_038270551.1;transl_table=11 NZ_CP087685.1 RefSeq gene 760632 761309 . - . ID=gene-LPH40_RS03165;Name=LPH40_RS03165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03165;old_locus_tag=LPH40_03165 NZ_CP087685.1 Protein Homology CDS 760632 761309 . - 0 ID=cds-WP_230428298.1;Parent=gene-LPH40_RS03165;Dbxref=Genbank:WP_230428298.1;Name=WP_230428298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607439.1;locus_tag=LPH40_RS03165;product=hypothetical protein;protein_id=WP_230428298.1;transl_table=11 NZ_CP087685.1 RefSeq gene 762299 763957 . + . ID=gene-LPH40_RS03170;Name=LPH40_RS03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03170;old_locus_tag=LPH40_03170 NZ_CP087685.1 Protein Homology CDS 762299 763957 . + 0 ID=cds-WP_051482267.1;Parent=gene-LPH40_RS03170;Dbxref=Genbank:WP_051482267.1;Name=WP_051482267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382723.1;locus_tag=LPH40_RS03170;product=EAL domain-containing response regulator;protein_id=WP_051482267.1;transl_table=11 NZ_CP087685.1 RefSeq gene 764260 765207 . + . ID=gene-LPH40_RS03175;Name=LPH40_RS03175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03175;old_locus_tag=LPH40_03175 NZ_CP087685.1 Protein Homology CDS 764260 765207 . + 0 ID=cds-WP_230428508.1;Parent=gene-LPH40_RS03175;Dbxref=Genbank:WP_230428508.1;Name=WP_230428508.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014567.2;locus_tag=LPH40_RS03175;product=ATP-binding protein;protein_id=WP_230428508.1;transl_table=11 NZ_CP087685.1 RefSeq gene 765267 766286 . + . ID=gene-LPH40_RS03180;Name=LPH40_RS03180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03180;old_locus_tag=LPH40_03180 NZ_CP087685.1 Protein Homology CDS 765267 766286 . + 0 ID=cds-WP_230428243.1;Parent=gene-LPH40_RS03180;Dbxref=Genbank:WP_230428243.1;Name=WP_230428243.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: protein motif:HMM:NF012301.2;locus_tag=LPH40_RS03180;product=response regulator;protein_id=WP_230428243.1;transl_table=11 NZ_CP087685.1 RefSeq gene 766288 766758 . - . ID=gene-LPH40_RS03185;Name=bfr;gbkey=Gene;gene=bfr;gene_biotype=protein_coding;locus_tag=LPH40_RS03185;old_locus_tag=LPH40_03185 NZ_CP087685.1 Protein Homology CDS 766288 766758 . - 0 ID=cds-WP_038270549.1;Parent=gene-LPH40_RS03185;Dbxref=Genbank:WP_038270549.1;Name=WP_038270549.1;Ontology_term=GO:0006880,GO:0004322,GO:0008199;gbkey=CDS;gene=bfr;go_function=ferroxidase activity|0004322||IEA,ferric iron binding|0008199||IEA;go_process=intracellular sequestering of iron ion|0006880||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808230.1;locus_tag=LPH40_RS03185;product=bacterioferritin;protein_id=WP_038270549.1;transl_table=11 NZ_CP087685.1 RefSeq gene 766840 767067 . - . ID=gene-LPH40_RS03190;Name=LPH40_RS03190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03190;old_locus_tag=LPH40_03190 NZ_CP087685.1 Protein Homology CDS 766840 767067 . - 0 ID=cds-WP_171898093.1;Parent=gene-LPH40_RS03190;Dbxref=Genbank:WP_171898093.1;Name=WP_171898093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892924.1;locus_tag=LPH40_RS03190;product=(2Fe-2S)-binding protein;protein_id=WP_171898093.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 767212 767805 . - . ID=gene-LPH40_RS03195;Name=LPH40_RS03195;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS03195;old_locus_tag=LPH40_03195;pseudo=true NZ_CP087685.1 Protein Homology CDS 767212 767805 . - 0 ID=cds-LPH40_RS03195;Parent=gene-LPH40_RS03195;Note=frameshifted%3B internal stop;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083624.1;locus_tag=LPH40_RS03195;product=RNA pyrophosphohydrolase;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 767851 767927 . + . ID=gene-LPH40_RS03200;Name=LPH40_RS03200;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS03200;old_locus_tag=LPH40_03200 NZ_CP087685.1 tRNAscan-SE tRNA 767851 767927 . + . ID=rna-LPH40_RS03200;Parent=gene-LPH40_RS03200;anticodon=(pos:767885..767887);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS03200;product=tRNA-Met NZ_CP087685.1 tRNAscan-SE exon 767851 767927 . + . ID=exon-LPH40_RS03200-1;Parent=rna-LPH40_RS03200;anticodon=(pos:767885..767887);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS03200;product=tRNA-Met NZ_CP087685.1 RefSeq gene 767981 768055 . + . ID=gene-LPH40_RS03205;Name=LPH40_RS03205;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS03205;old_locus_tag=LPH40_03205 NZ_CP087685.1 tRNAscan-SE tRNA 767981 768055 . + . ID=rna-LPH40_RS03205;Parent=gene-LPH40_RS03205;anticodon=(pos:768013..768015);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS03205;product=tRNA-Gln NZ_CP087685.1 tRNAscan-SE exon 767981 768055 . + . ID=exon-LPH40_RS03205-1;Parent=rna-LPH40_RS03205;anticodon=(pos:768013..768015);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS03205;product=tRNA-Gln NZ_CP087685.1 RefSeq gene 768594 769805 . - . ID=gene-LPH40_RS03210;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=LPH40_RS03210;old_locus_tag=LPH40_03210 NZ_CP087685.1 Protein Homology CDS 768594 769805 . - 0 ID=cds-WP_038270548.1;Parent=gene-LPH40_RS03210;Dbxref=Genbank:WP_038270548.1;Name=WP_038270548.1;Ontology_term=GO:0006556,GO:0004478;gbkey=CDS;gene=metK;go_function=methionine adenosyltransferase activity|0004478||IEA;go_process=S-adenosylmethionine biosynthetic process|0006556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083625.1;locus_tag=LPH40_RS03210;product=methionine adenosyltransferase;protein_id=WP_038270548.1;transl_table=11 NZ_CP087685.1 RefSeq gene 772187 772402 . - . ID=gene-LPH40_RS03215;Name=LPH40_RS03215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03215;old_locus_tag=LPH40_03215 NZ_CP087685.1 GeneMarkS-2+ CDS 772187 772402 . - 0 ID=cds-WP_038270546.1;Parent=gene-LPH40_RS03215;Dbxref=Genbank:WP_038270546.1;Name=WP_038270546.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03215;product=hypothetical protein;protein_id=WP_038270546.1;transl_table=11 NZ_CP087685.1 RefSeq gene 773433 774881 . - . ID=gene-LPH40_RS03220;Name=LPH40_RS03220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03220;old_locus_tag=LPH40_03220 NZ_CP087685.1 Protein Homology CDS 773433 774881 . - 0 ID=cds-WP_051482260.1;Parent=gene-LPH40_RS03220;Dbxref=Genbank:WP_051482260.1;Name=WP_051482260.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852808.1;locus_tag=LPH40_RS03220;product=ATP-binding protein;protein_id=WP_051482260.1;transl_table=11 NZ_CP087685.1 RefSeq gene 774897 775580 . - . ID=gene-LPH40_RS03225;Name=LPH40_RS03225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03225;old_locus_tag=LPH40_03225 NZ_CP087685.1 Protein Homology CDS 774897 775580 . - 0 ID=cds-WP_038270544.1;Parent=gene-LPH40_RS03225;Dbxref=Genbank:WP_038270544.1;Name=WP_038270544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017917079.1;locus_tag=LPH40_RS03225;product=response regulator transcription factor;protein_id=WP_038270544.1;transl_table=11 NZ_CP087685.1 RefSeq gene 775671 776042 . - . ID=gene-LPH40_RS03230;Name=LPH40_RS03230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03230;old_locus_tag=LPH40_03230 NZ_CP087685.1 Protein Homology CDS 775671 776042 . - 0 ID=cds-WP_038270543.1;Parent=gene-LPH40_RS03230;Dbxref=Genbank:WP_038270543.1;Name=WP_038270543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083628.1;locus_tag=LPH40_RS03230;product=hypothetical protein;protein_id=WP_038270543.1;transl_table=11 NZ_CP087685.1 RefSeq gene 776261 777271 . - . ID=gene-LPH40_RS03235;Name=dusA;gbkey=Gene;gene=dusA;gene_biotype=protein_coding;locus_tag=LPH40_RS03235;old_locus_tag=LPH40_03235 NZ_CP087685.1 Protein Homology CDS 776261 777271 . - 0 ID=cds-WP_038270542.1;Parent=gene-LPH40_RS03235;Dbxref=Genbank:WP_038270542.1;Name=WP_038270542.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusA;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083629.1;locus_tag=LPH40_RS03235;product=tRNA dihydrouridine(20/20a) synthase DusA;protein_id=WP_038270542.1;transl_table=11 NZ_CP087685.1 RefSeq gene 780584 782629 . - . ID=gene-LPH40_RS03240;Name=LPH40_RS03240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03240;old_locus_tag=LPH40_03240 NZ_CP087685.1 Protein Homology CDS 780584 782629 . - 0 ID=cds-WP_038270540.1;Parent=gene-LPH40_RS03240;Dbxref=Genbank:WP_038270540.1;Name=WP_038270540.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852444.1;locus_tag=LPH40_RS03240;product=TonB-dependent receptor;protein_id=WP_038270540.1;transl_table=11 NZ_CP087685.1 RefSeq gene 782786 783196 . + . ID=gene-LPH40_RS03245;Name=LPH40_RS03245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03245;old_locus_tag=LPH40_03245 NZ_CP087685.1 Protein Homology CDS 782786 783196 . + 0 ID=cds-WP_038270578.1;Parent=gene-LPH40_RS03245;Dbxref=Genbank:WP_038270578.1;Name=WP_038270578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852104.1;locus_tag=LPH40_RS03245;product=MerC domain-containing protein;protein_id=WP_038270578.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 783311 783514 . + . ID=gene-LPH40_RS03250;Name=LPH40_RS03250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS03250;old_locus_tag=LPH40_03250;partial=true;pseudo=true;start_range=.,783311 NZ_CP087685.1 Protein Homology CDS 783311 783514 . + 0 ID=cds-LPH40_RS03250;Parent=gene-LPH40_RS03250;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006412,GO:0003735,GO:0022627;gbkey=CDS;go_component=cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487537.1;locus_tag=LPH40_RS03250;partial=true;product=30S ribosomal protein THX;pseudo=true;start_range=.,783311;transl_table=11 NZ_CP087685.1 RefSeq gene 784316 786901 . - . ID=gene-LPH40_RS03255;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;locus_tag=LPH40_RS03255;old_locus_tag=LPH40_03255 NZ_CP087685.1 Protein Homology CDS 784316 786901 . - 0 ID=cds-WP_038270539.1;Parent=gene-LPH40_RS03255;Dbxref=Genbank:WP_038270539.1;Name=WP_038270539.1;Ontology_term=GO:0009408,GO:0042026,GO:0005524,GO:0016887;gbkey=CDS;gene=clpB;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=response to heat|0009408||IEA,protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892912.1;locus_tag=LPH40_RS03255;product=ATP-dependent chaperone ClpB;protein_id=WP_038270539.1;transl_table=11 NZ_CP087685.1 RefSeq gene 787235 787465 . + . ID=gene-LPH40_RS03260;Name=LPH40_RS03260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03260;old_locus_tag=LPH40_03260 NZ_CP087685.1 GeneMarkS-2+ CDS 787235 787465 . + 0 ID=cds-WP_152536580.1;Parent=gene-LPH40_RS03260;Dbxref=Genbank:WP_152536580.1;Name=WP_152536580.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03260;product=hypothetical protein;protein_id=WP_152536580.1;transl_table=11 NZ_CP087685.1 RefSeq gene 787591 787782 . - . ID=gene-LPH40_RS03265;Name=LPH40_RS03265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03265;old_locus_tag=LPH40_03265 NZ_CP087685.1 Protein Homology CDS 787591 787782 . - 0 ID=cds-WP_038270538.1;Parent=gene-LPH40_RS03265;Dbxref=Genbank:WP_038270538.1;Name=WP_038270538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338043.1;locus_tag=LPH40_RS03265;product=rubredoxin;protein_id=WP_038270538.1;transl_table=11 NZ_CP087685.1 RefSeq gene 787860 788474 . + . ID=gene-LPH40_RS03270;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=LPH40_RS03270;old_locus_tag=LPH40_03270 NZ_CP087685.1 Protein Homology CDS 787860 788474 . + 0 ID=cds-WP_038270537.1;Parent=gene-LPH40_RS03270;Dbxref=Genbank:WP_038270537.1;Name=WP_038270537.1;Ontology_term=GO:0009228,GO:0004789;gbkey=CDS;gene=thiE;go_function=thiamine-phosphate diphosphorylase activity|0004789||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852106.1;locus_tag=LPH40_RS03270;product=thiamine phosphate synthase;protein_id=WP_038270537.1;transl_table=11 NZ_CP087685.1 RefSeq gene 788509 788649 . - . ID=gene-LPH40_RS03275;Name=LPH40_RS03275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03275;old_locus_tag=LPH40_03275 NZ_CP087685.1 GeneMarkS-2+ CDS 788509 788649 . - 0 ID=cds-WP_171898058.1;Parent=gene-LPH40_RS03275;Dbxref=Genbank:WP_171898058.1;Name=WP_171898058.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03275;product=hypothetical protein;protein_id=WP_171898058.1;transl_table=11 NZ_CP087685.1 RefSeq gene 789020 789181 . - . ID=gene-LPH40_RS03280;Name=LPH40_RS03280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03280;old_locus_tag=LPH40_03280 NZ_CP087685.1 GeneMarkS-2+ CDS 789020 789181 . - 0 ID=cds-WP_160165135.1;Parent=gene-LPH40_RS03280;Dbxref=Genbank:WP_160165135.1;Name=WP_160165135.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03280;product=hypothetical protein;protein_id=WP_160165135.1;transl_table=11 NZ_CP087685.1 RefSeq gene 789966 791195 . + . ID=gene-LPH40_RS03285;Name=LPH40_RS03285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03285;old_locus_tag=LPH40_03285 NZ_CP087685.1 Protein Homology CDS 789966 791195 . + 0 ID=cds-WP_038270535.1;Parent=gene-LPH40_RS03285;Dbxref=Genbank:WP_038270535.1;Name=WP_038270535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086591.1;locus_tag=LPH40_RS03285;product=cytochrome P450;protein_id=WP_038270535.1;transl_table=11 NZ_CP087685.1 RefSeq gene 792801 794069 . + . ID=gene-LPH40_RS03290;Name=LPH40_RS03290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03290;old_locus_tag=LPH40_03290 NZ_CP087685.1 Protein Homology CDS 792801 794069 . + 0 ID=cds-WP_038270533.1;Parent=gene-LPH40_RS03290;Dbxref=Genbank:WP_038270533.1;Name=WP_038270533.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089920.1;locus_tag=LPH40_RS03290;product=lipase;protein_id=WP_038270533.1;transl_table=11 NZ_CP087685.1 RefSeq gene 794810 796054 . + . ID=gene-LPH40_RS03295;Name=LPH40_RS03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03295;old_locus_tag=LPH40_03295 NZ_CP087685.1 Protein Homology CDS 794810 796054 . + 0 ID=cds-WP_114867225.1;Parent=gene-LPH40_RS03295;Dbxref=Genbank:WP_114867225.1;Name=WP_114867225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892891.1;locus_tag=LPH40_RS03295;product=alpha/beta hydrolase;protein_id=WP_114867225.1;transl_table=11 NZ_CP087685.1 RefSeq gene 797103 797363 . - . ID=gene-LPH40_RS03300;Name=LPH40_RS03300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03300;old_locus_tag=LPH40_03300 NZ_CP087685.1 GeneMarkS-2+ CDS 797103 797363 . - 0 ID=cds-WP_038270531.1;Parent=gene-LPH40_RS03300;Dbxref=Genbank:WP_038270531.1;Name=WP_038270531.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03300;product=hypothetical protein;protein_id=WP_038270531.1;transl_table=11 NZ_CP087685.1 RefSeq gene 797379 797864 . - . ID=gene-LPH40_RS03305;Name=LPH40_RS03305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03305;old_locus_tag=LPH40_03305 NZ_CP087685.1 GeneMarkS-2+ CDS 797379 797864 . - 0 ID=cds-WP_038270530.1;Parent=gene-LPH40_RS03305;Dbxref=Genbank:WP_038270530.1;Name=WP_038270530.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03305;product=hypothetical protein;protein_id=WP_038270530.1;transl_table=11 NZ_CP087685.1 RefSeq gene 798526 798702 . + . ID=gene-LPH40_RS03310;Name=LPH40_RS03310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03310;old_locus_tag=LPH40_03310 NZ_CP087685.1 GeneMarkS-2+ CDS 798526 798702 . + 0 ID=cds-WP_160165133.1;Parent=gene-LPH40_RS03310;Dbxref=Genbank:WP_160165133.1;Name=WP_160165133.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03310;product=hypothetical protein;protein_id=WP_160165133.1;transl_table=11 NZ_CP087685.1 RefSeq gene 799208 800623 . + . ID=gene-LPH40_RS03315;Name=LPH40_RS03315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03315;old_locus_tag=LPH40_03315 NZ_CP087685.1 Protein Homology CDS 799208 800623 . + 0 ID=cds-WP_038270576.1;Parent=gene-LPH40_RS03315;Dbxref=Genbank:WP_038270576.1;Name=WP_038270576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086603.1;locus_tag=LPH40_RS03315;product=replicative DNA helicase;protein_id=WP_038270576.1;transl_table=11 NZ_CP087685.1 RefSeq gene 801151 801873 . + . ID=gene-LPH40_RS03320;Name=LPH40_RS03320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03320;old_locus_tag=LPH40_03320 NZ_CP087685.1 Protein Homology CDS 801151 801873 . + 0 ID=cds-WP_051482259.1;Parent=gene-LPH40_RS03320;Dbxref=Genbank:WP_051482259.1;Name=WP_051482259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089919.1;locus_tag=LPH40_RS03320;product=OmpA family protein;protein_id=WP_051482259.1;transl_table=11 NZ_CP087685.1 RefSeq gene 804298 805251 . - . ID=gene-LPH40_RS03325;Name=LPH40_RS03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03325;old_locus_tag=LPH40_03325 NZ_CP087685.1 Protein Homology CDS 804298 805251 . - 0 ID=cds-WP_038270529.1;Parent=gene-LPH40_RS03325;Dbxref=Genbank:WP_038270529.1;Name=WP_038270529.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089916.1;locus_tag=LPH40_RS03325;product=ribokinase;protein_id=WP_038270529.1;transl_table=11 NZ_CP087685.1 RefSeq gene 805782 806753 . + . ID=gene-LPH40_RS03330;Name=LPH40_RS03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03330;old_locus_tag=LPH40_03330 NZ_CP087685.1 Protein Homology CDS 805782 806753 . + 0 ID=cds-WP_038270528.1;Parent=gene-LPH40_RS03330;Dbxref=Genbank:WP_038270528.1;Name=WP_038270528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338044.1;locus_tag=LPH40_RS03330;product=aldo/keto reductase;protein_id=WP_038270528.1;transl_table=11 NZ_CP087685.1 RefSeq gene 808371 810800 . - . ID=gene-LPH40_RS03335;Name=LPH40_RS03335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03335;old_locus_tag=LPH40_03335 NZ_CP087685.1 Protein Homology CDS 808371 810800 . - 0 ID=cds-WP_038270527.1;Parent=gene-LPH40_RS03335;Dbxref=Genbank:WP_038270527.1;Name=WP_038270527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812411.1;locus_tag=LPH40_RS03335;product=penicillin-binding protein 1A;protein_id=WP_038270527.1;transl_table=11 NZ_CP087685.1 RefSeq gene 811018 812100 . + . ID=gene-LPH40_RS03340;Name=pilM;gbkey=Gene;gene=pilM;gene_biotype=protein_coding;locus_tag=LPH40_RS03340;old_locus_tag=LPH40_03340 NZ_CP087685.1 Protein Homology CDS 811018 812100 . + 0 ID=cds-WP_171898059.1;Parent=gene-LPH40_RS03340;Dbxref=Genbank:WP_171898059.1;Name=WP_171898059.1;Ontology_term=GO:0009297;gbkey=CDS;gene=pilM;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974443.1;locus_tag=LPH40_RS03340;product=type IV pilus assembly protein PilM;protein_id=WP_171898059.1;transl_table=11 NZ_CP087685.1 RefSeq gene 812100 812777 . + . ID=gene-LPH40_RS03345;Name=LPH40_RS03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03345;old_locus_tag=LPH40_03345 NZ_CP087685.1 Protein Homology CDS 812100 812777 . + 0 ID=cds-WP_038270525.1;Parent=gene-LPH40_RS03345;Dbxref=Genbank:WP_038270525.1;Name=WP_038270525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089910.1;locus_tag=LPH40_RS03345;product=PilN domain-containing protein;protein_id=WP_038270525.1;transl_table=11 NZ_CP087685.1 RefSeq gene 812777 813445 . + . ID=gene-LPH40_RS03350;Name=LPH40_RS03350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03350;old_locus_tag=LPH40_03350 NZ_CP087685.1 Protein Homology CDS 812777 813445 . + 0 ID=cds-WP_038270524.1;Parent=gene-LPH40_RS03350;Dbxref=Genbank:WP_038270524.1;Name=WP_038270524.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089909.1;locus_tag=LPH40_RS03350;product=type 4a pilus biogenesis protein PilO;protein_id=WP_038270524.1;transl_table=11 NZ_CP087685.1 RefSeq gene 813442 813972 . + . ID=gene-LPH40_RS03355;Name=LPH40_RS03355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03355;old_locus_tag=LPH40_03355 NZ_CP087685.1 Protein Homology CDS 813442 813972 . + 0 ID=cds-WP_038270523.1;Parent=gene-LPH40_RS03355;Dbxref=Genbank:WP_038270523.1;Name=WP_038270523.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086595.1;locus_tag=LPH40_RS03355;product=pilus assembly protein PilP;protein_id=WP_038270523.1;transl_table=11 NZ_CP087685.1 RefSeq gene 813996 815864 . + . ID=gene-LPH40_RS03360;Name=LPH40_RS03360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03360;old_locus_tag=LPH40_03360 NZ_CP087685.1 Protein Homology CDS 813996 815864 . + 0 ID=cds-WP_171898060.1;Parent=gene-LPH40_RS03360;Dbxref=Genbank:WP_171898060.1;Name=WP_171898060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911884.1;locus_tag=LPH40_RS03360;product=type IV pilus secretin PilQ family protein;protein_id=WP_171898060.1;transl_table=11 NZ_CP087685.1 RefSeq gene 817048 817806 . + . ID=gene-LPH40_RS03365;Name=LPH40_RS03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03365;old_locus_tag=LPH40_03365 NZ_CP087685.1 Protein Homology CDS 817048 817806 . + 0 ID=cds-WP_038270521.1;Parent=gene-LPH40_RS03365;Dbxref=Genbank:WP_038270521.1;Name=WP_038270521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852112.1;locus_tag=LPH40_RS03365;product=phosphatase PAP2 family protein;protein_id=WP_038270521.1;transl_table=11 NZ_CP087685.1 RefSeq gene 817842 819458 . + . ID=gene-LPH40_RS03370;Name=LPH40_RS03370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03370;old_locus_tag=LPH40_03370 NZ_CP087685.1 Protein Homology CDS 817842 819458 . + 0 ID=cds-WP_051482258.1;Parent=gene-LPH40_RS03370;Dbxref=Genbank:WP_051482258.1;Name=WP_051482258.1;Ontology_term=GO:0016772;gbkey=CDS;go_function=transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013535821.1;locus_tag=LPH40_RS03370;product=phosphoethanolamine--lipid A transferase;protein_id=WP_051482258.1;transl_table=11 NZ_CP087685.1 RefSeq gene 820253 821461 . - . ID=gene-LPH40_RS03375;Name=LPH40_RS03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03375;old_locus_tag=LPH40_03375 NZ_CP087685.1 Protein Homology CDS 820253 821461 . - 0 ID=cds-WP_038270519.1;Parent=gene-LPH40_RS03375;Dbxref=Genbank:WP_038270519.1;Name=WP_038270519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086591.1;locus_tag=LPH40_RS03375;product=cytochrome P450;protein_id=WP_038270519.1;transl_table=11 NZ_CP087685.1 RefSeq gene 822560 824716 . - . ID=gene-LPH40_RS03380;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=LPH40_RS03380;old_locus_tag=LPH40_03380 NZ_CP087685.1 Protein Homology CDS 822560 824716 . - 0 ID=cds-WP_038270518.1;Parent=gene-LPH40_RS03380;Dbxref=Genbank:WP_038270518.1;Name=WP_038270518.1;Ontology_term=GO:0006281,GO:0006310,GO:0003676,GO:0003678,GO:0005524;gbkey=CDS;gene=recG;go_function=nucleic acid binding|0003676||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300815.1;locus_tag=LPH40_RS03380;product=ATP-dependent DNA helicase RecG;protein_id=WP_038270518.1;transl_table=11 NZ_CP087685.1 RefSeq gene 824724 825107 . - . ID=gene-LPH40_RS03385;Name=LPH40_RS03385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03385;old_locus_tag=LPH40_03385 NZ_CP087685.1 Protein Homology CDS 824724 825107 . - 0 ID=cds-WP_038270517.1;Parent=gene-LPH40_RS03385;Dbxref=Genbank:WP_038270517.1;Name=WP_038270517.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486159.1;locus_tag=LPH40_RS03385;product=RidA family protein;protein_id=WP_038270517.1;transl_table=11 NZ_CP087685.1 RefSeq gene 825389 827560 . - . ID=gene-LPH40_RS03390;Name=LPH40_RS03390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03390;old_locus_tag=LPH40_03390 NZ_CP087685.1 Protein Homology CDS 825389 827560 . - 0 ID=cds-WP_038270516.1;Parent=gene-LPH40_RS03390;Dbxref=Genbank:WP_038270516.1;Name=WP_038270516.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269543.1;locus_tag=LPH40_RS03390;product=bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=WP_038270516.1;transl_table=11 NZ_CP087685.1 RefSeq gene 828552 828737 . + . ID=gene-LPH40_RS03395;Name=LPH40_RS03395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03395;old_locus_tag=LPH40_03395 NZ_CP087685.1 GeneMarkS-2+ CDS 828552 828737 . + 0 ID=cds-WP_038270515.1;Parent=gene-LPH40_RS03395;Dbxref=Genbank:WP_038270515.1;Name=WP_038270515.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03395;product=hypothetical protein;protein_id=WP_038270515.1;transl_table=11 NZ_CP087685.1 RefSeq gene 829934 831319 . + . ID=gene-LPH40_RS03400;Name=LPH40_RS03400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03400;old_locus_tag=LPH40_03400 NZ_CP087685.1 Protein Homology CDS 829934 831319 . + 0 ID=cds-WP_038270513.1;Parent=gene-LPH40_RS03400;Dbxref=Genbank:WP_038270513.1;Name=WP_038270513.1;Ontology_term=GO:0016491,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003466154.1;locus_tag=LPH40_RS03400;product=FAD-binding protein;protein_id=WP_038270513.1;transl_table=11 NZ_CP087685.1 RefSeq gene 834741 835865 . + . ID=gene-LPH40_RS03405;Name=LPH40_RS03405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03405;old_locus_tag=LPH40_03405 NZ_CP087685.1 Protein Homology CDS 834741 835865 . + 0 ID=cds-WP_038270511.1;Parent=gene-LPH40_RS03405;Dbxref=Genbank:WP_038270511.1;Name=WP_038270511.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171142.1;locus_tag=LPH40_RS03405;product=OmpA family protein;protein_id=WP_038270511.1;transl_table=11 NZ_CP087685.1 RefSeq gene 837341 837865 . + . ID=gene-LPH40_RS03410;Name=LPH40_RS03410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03410;old_locus_tag=LPH40_03410 NZ_CP087685.1 Protein Homology CDS 837341 837865 . + 0 ID=cds-WP_038270510.1;Parent=gene-LPH40_RS03410;Dbxref=Genbank:WP_038270510.1;Name=WP_038270510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851646.1;locus_tag=LPH40_RS03410;product=disulfide bond formation protein B;protein_id=WP_038270510.1;transl_table=11 NZ_CP087685.1 RefSeq gene 838683 841469 . - . ID=gene-LPH40_RS03415;Name=LPH40_RS03415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03415;old_locus_tag=LPH40_03415 NZ_CP087685.1 Protein Homology CDS 838683 841469 . - 0 ID=cds-WP_038270509.1;Parent=gene-LPH40_RS03415;Dbxref=Genbank:WP_038270509.1;Name=WP_038270509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089937.1;locus_tag=LPH40_RS03415;product=TonB-dependent receptor;protein_id=WP_038270509.1;transl_table=11 NZ_CP087685.1 RefSeq gene 841700 842173 . + . ID=gene-LPH40_RS03420;Name=rlmH;gbkey=Gene;gene=rlmH;gene_biotype=protein_coding;locus_tag=LPH40_RS03420;old_locus_tag=LPH40_03420 NZ_CP087685.1 Protein Homology CDS 841700 842173 . + 0 ID=cds-WP_038270508.1;Parent=gene-LPH40_RS03420;Dbxref=Genbank:WP_038270508.1;Name=WP_038270508.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rlmH;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086621.1;locus_tag=LPH40_RS03420;product=23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH;protein_id=WP_038270508.1;transl_table=11 NZ_CP087685.1 RefSeq gene 842891 843103 . - . ID=gene-LPH40_RS03425;Name=LPH40_RS03425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03425;old_locus_tag=LPH40_03425 NZ_CP087685.1 GeneMarkS-2+ CDS 842891 843103 . - 0 ID=cds-WP_038270507.1;Parent=gene-LPH40_RS03425;Dbxref=Genbank:WP_038270507.1;Name=WP_038270507.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03425;product=hypothetical protein;protein_id=WP_038270507.1;transl_table=11 NZ_CP087685.1 RefSeq gene 843982 844056 . - . ID=gene-LPH40_RS03430;Name=LPH40_RS03430;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS03430;old_locus_tag=LPH40_03430 NZ_CP087685.1 tRNAscan-SE tRNA 843982 844056 . - . ID=rna-LPH40_RS03430;Parent=gene-LPH40_RS03430;anticodon=(pos:complement(844022..844024));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS03430;product=tRNA-Val NZ_CP087685.1 tRNAscan-SE exon 843982 844056 . - . ID=exon-LPH40_RS03430-1;Parent=rna-LPH40_RS03430;anticodon=(pos:complement(844022..844024));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS03430;product=tRNA-Val NZ_CP087685.1 RefSeq gene 844166 846178 . - . ID=gene-LPH40_RS03435;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=LPH40_RS03435;old_locus_tag=LPH40_03435 NZ_CP087685.1 Protein Homology CDS 844166 846178 . - 0 ID=cds-WP_038270506.1;Parent=gene-LPH40_RS03435;Dbxref=Genbank:WP_038270506.1;Name=WP_038270506.1;Ontology_term=GO:0006289,GO:0003677,GO:0005515,GO:0005524,GO:0016787,GO:0016887,GO:0009380;gbkey=CDS;gene=uvrB;go_component=excinuclease repair complex|0009380||IEA;go_function=DNA binding|0003677||IEA,protein binding|0005515||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010342098.1;locus_tag=LPH40_RS03435;product=excinuclease ABC subunit UvrB;protein_id=WP_038270506.1;transl_table=11 NZ_CP087685.1 RefSeq gene 846333 846878 . + . ID=gene-LPH40_RS03440;Name=LPH40_RS03440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03440;old_locus_tag=LPH40_03440 NZ_CP087685.1 Protein Homology CDS 846333 846878 . + 0 ID=cds-WP_038270574.1;Parent=gene-LPH40_RS03440;Dbxref=Genbank:WP_038270574.1;Name=WP_038270574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098232.1;locus_tag=LPH40_RS03440;product=Tfp pilus assembly protein FimT/FimU;protein_id=WP_038270574.1;transl_table=11 NZ_CP087685.1 RefSeq gene 847585 848091 . - . ID=gene-LPH40_RS03445;Name=LPH40_RS03445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03445;old_locus_tag=LPH40_03445 NZ_CP087685.1 Protein Homology CDS 847585 848091 . - 0 ID=cds-WP_038270505.1;Parent=gene-LPH40_RS03445;Dbxref=Genbank:WP_038270505.1;Name=WP_038270505.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089696.1;locus_tag=LPH40_RS03445;product=hypothetical protein;protein_id=WP_038270505.1;transl_table=11 NZ_CP087685.1 RefSeq gene 848111 849019 . - . ID=gene-LPH40_RS03450;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=LPH40_RS03450;old_locus_tag=LPH40_03450 NZ_CP087685.1 Protein Homology CDS 848111 849019 . - 0 ID=cds-WP_038270504.1;Parent=gene-LPH40_RS03450;Dbxref=Genbank:WP_038270504.1;Name=WP_038270504.1;Ontology_term=GO:0009089,GO:0008840;gbkey=CDS;gene=dapA;go_function=4-hydroxy-tetrahydrodipicolinate synthase activity|0008840||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089694.1;locus_tag=LPH40_RS03450;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_038270504.1;transl_table=11 NZ_CP087685.1 RefSeq gene 849121 849747 . + . ID=gene-LPH40_RS03455;Name=LPH40_RS03455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03455;old_locus_tag=LPH40_03455 NZ_CP087685.1 Protein Homology CDS 849121 849747 . + 0 ID=cds-WP_114867181.1;Parent=gene-LPH40_RS03455;Dbxref=Genbank:WP_114867181.1;Name=WP_114867181.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503111.1;locus_tag=LPH40_RS03455;product=glycine cleavage system protein R;protein_id=WP_114867181.1;transl_table=11 NZ_CP087685.1 RefSeq gene 849795 850274 . + . ID=gene-LPH40_RS03460;Name=LPH40_RS03460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03460;old_locus_tag=LPH40_03460 NZ_CP087685.1 Protein Homology CDS 849795 850274 . + 0 ID=cds-WP_038270503.1;Parent=gene-LPH40_RS03460;Dbxref=Genbank:WP_038270503.1;Name=WP_038270503.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851611.1;locus_tag=LPH40_RS03460;product=peroxiredoxin;protein_id=WP_038270503.1;transl_table=11 NZ_CP087685.1 RefSeq gene 850352 851752 . + . ID=gene-LPH40_RS03465;Name=LPH40_RS03465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03465;old_locus_tag=LPH40_03465 NZ_CP087685.1 Protein Homology CDS 850352 851752 . + 0 ID=cds-WP_038270502.1;Parent=gene-LPH40_RS03465;Dbxref=Genbank:WP_038270502.1;Name=WP_038270502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365742.1;locus_tag=LPH40_RS03465;product=PhoH family protein;protein_id=WP_038270502.1;transl_table=11 NZ_CP087685.1 RefSeq gene 852606 852878 . - . ID=gene-LPH40_RS03470;Name=LPH40_RS03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03470;old_locus_tag=LPH40_03470 NZ_CP087685.1 GeneMarkS-2+ CDS 852606 852878 . - 0 ID=cds-WP_038270501.1;Parent=gene-LPH40_RS03470;Dbxref=Genbank:WP_038270501.1;Name=WP_038270501.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03470;product=hypothetical protein;protein_id=WP_038270501.1;transl_table=11 NZ_CP087685.1 RefSeq gene 853398 853529 . - . ID=gene-LPH40_RS11960;Name=LPH40_RS11960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11960 NZ_CP087685.1 GeneMarkS-2+ CDS 853398 853529 . - 0 ID=cds-WP_267903159.1;Parent=gene-LPH40_RS11960;Dbxref=Genbank:WP_267903159.1;Name=WP_267903159.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11960;product=hypothetical protein;protein_id=WP_267903159.1;transl_table=11 NZ_CP087685.1 RefSeq gene 853552 853740 . + . ID=gene-LPH40_RS03475;Name=LPH40_RS03475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03475;old_locus_tag=LPH40_03475 NZ_CP087685.1 GeneMarkS-2+ CDS 853552 853740 . + 0 ID=cds-WP_171898061.1;Parent=gene-LPH40_RS03475;Dbxref=Genbank:WP_171898061.1;Name=WP_171898061.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03475;product=hypothetical protein;protein_id=WP_171898061.1;transl_table=11 NZ_CP087685.1 RefSeq gene 853731 854024 . - . ID=gene-LPH40_RS03480;Name=LPH40_RS03480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03480;old_locus_tag=LPH40_03480 NZ_CP087685.1 Protein Homology CDS 853731 854024 . - 0 ID=cds-WP_038270572.1;Parent=gene-LPH40_RS03480;Dbxref=Genbank:WP_038270572.1;Name=WP_038270572.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089684.1;locus_tag=LPH40_RS03480;product=hypothetical protein;protein_id=WP_038270572.1;transl_table=11 NZ_CP087685.1 RefSeq gene 855536 856510 . - . ID=gene-LPH40_RS03485;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;locus_tag=LPH40_RS03485;old_locus_tag=LPH40_03485 NZ_CP087685.1 Protein Homology CDS 855536 856510 . - 0 ID=cds-WP_038270498.1;Parent=gene-LPH40_RS03485;Dbxref=Genbank:WP_038270498.1;Name=WP_038270498.1;Ontology_term=GO:0009228,GO:0009030;gbkey=CDS;gene=thiL;go_function=thiamine-phosphate kinase activity|0009030||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851606.1;locus_tag=LPH40_RS03485;product=thiamine-phosphate kinase;protein_id=WP_038270498.1;transl_table=11 NZ_CP087685.1 RefSeq gene 856594 857064 . - . ID=gene-LPH40_RS03490;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=LPH40_RS03490;old_locus_tag=LPH40_03490 NZ_CP087685.1 Protein Homology CDS 856594 857064 . - 0 ID=cds-WP_038270497.1;Parent=gene-LPH40_RS03490;Dbxref=Genbank:WP_038270497.1;Name=WP_038270497.1;Ontology_term=GO:0006355;gbkey=CDS;gene=nusB;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893474.1;locus_tag=LPH40_RS03490;product=transcription antitermination factor NusB;protein_id=WP_038270497.1;transl_table=11 NZ_CP087685.1 RefSeq gene 857061 857525 . - . ID=gene-LPH40_RS03495;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=LPH40_RS03495;old_locus_tag=LPH40_03495 NZ_CP087685.1 Protein Homology CDS 857061 857525 . - 0 ID=cds-WP_038270496.1;Parent=gene-LPH40_RS03495;Dbxref=Genbank:WP_038270496.1;Name=WP_038270496.1;Ontology_term=GO:0000906,GO:0009349;gbkey=CDS;gene=ribH;go_component=riboflavin synthase complex|0009349||IEA;go_function=6%2C7-dimethyl-8-ribityllumazine synthase activity|0000906||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409394.1;locus_tag=LPH40_RS03495;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_038270496.1;transl_table=11 NZ_CP087685.1 RefSeq gene 857556 858689 . - . ID=gene-LPH40_RS03500;Name=ribB;gbkey=Gene;gene=ribB;gene_biotype=protein_coding;locus_tag=LPH40_RS03500;old_locus_tag=LPH40_03500 NZ_CP087685.1 Protein Homology CDS 857556 858689 . - 0 ID=cds-WP_038270495.1;Parent=gene-LPH40_RS03500;Dbxref=Genbank:WP_038270495.1;Name=WP_038270495.1;Ontology_term=GO:0008686;gbkey=CDS;gene=ribB;go_function=3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity|0008686||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851604.1;locus_tag=LPH40_RS03500;product=3%2C4-dihydroxy-2-butanone-4-phosphate synthase;protein_id=WP_038270495.1;transl_table=11 NZ_CP087685.1 RefSeq gene 858689 859288 . - . ID=gene-LPH40_RS03505;Name=LPH40_RS03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03505;old_locus_tag=LPH40_03505 NZ_CP087685.1 Protein Homology CDS 858689 859288 . - 0 ID=cds-WP_038270494.1;Parent=gene-LPH40_RS03505;Dbxref=Genbank:WP_038270494.1;Name=WP_038270494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576782.1;locus_tag=LPH40_RS03505;product=riboflavin synthase;protein_id=WP_038270494.1;transl_table=11 NZ_CP087685.1 RefSeq gene 859975 861069 . - . ID=gene-LPH40_RS03510;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=LPH40_RS03510;old_locus_tag=LPH40_03510 NZ_CP087685.1 Protein Homology CDS 859975 861069 . - 0 ID=cds-WP_038270493.1;Parent=gene-LPH40_RS03510;Dbxref=Genbank:WP_038270493.1;Name=WP_038270493.1;Ontology_term=GO:0008703,GO:0008835;gbkey=CDS;gene=ribD;go_function=5-amino-6-(5-phosphoribosylamino)uracil reductase activity|0008703||IEA,diaminohydroxyphosphoribosylaminopyrimidine deaminase activity|0008835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893469.1;locus_tag=LPH40_RS03510;product=bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD;protein_id=WP_038270493.1;transl_table=11 NZ_CP087685.1 RefSeq gene 861082 861360 . - . ID=gene-LPH40_RS03515;Name=LPH40_RS03515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03515;old_locus_tag=LPH40_03515 NZ_CP087685.1 GeneMarkS-2+ CDS 861082 861360 . - 0 ID=cds-WP_038270492.1;Parent=gene-LPH40_RS03515;Dbxref=Genbank:WP_038270492.1;Name=WP_038270492.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03515;product=hypothetical protein;protein_id=WP_038270492.1;transl_table=11 NZ_CP087685.1 RefSeq gene 861469 862014 . - . ID=gene-LPH40_RS03520;Name=nrdR;gbkey=Gene;gene=nrdR;gene_biotype=protein_coding;locus_tag=LPH40_RS03520;old_locus_tag=LPH40_03520 NZ_CP087685.1 Protein Homology CDS 861469 862014 . - 0 ID=cds-WP_038270491.1;Parent=gene-LPH40_RS03520;Dbxref=Genbank:WP_038270491.1;Name=WP_038270491.1;Ontology_term=GO:0006355,GO:0140110;gbkey=CDS;gene=nrdR;go_function=transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086418.1;locus_tag=LPH40_RS03520;product=transcriptional regulator NrdR;protein_id=WP_038270491.1;transl_table=11 NZ_CP087685.1 RefSeq gene 862032 862538 . - . ID=gene-LPH40_RS03525;Name=LPH40_RS03525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03525;old_locus_tag=LPH40_03525 NZ_CP087685.1 Protein Homology CDS 862032 862538 . - 0 ID=cds-WP_038270490.1;Parent=gene-LPH40_RS03525;Dbxref=Genbank:WP_038270490.1;Name=WP_038270490.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893466.1;locus_tag=LPH40_RS03525;product=hypothetical protein;protein_id=WP_038270490.1;transl_table=11 NZ_CP087685.1 RefSeq gene 862622 863875 . - . ID=gene-LPH40_RS03530;Name=LPH40_RS03530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03530;old_locus_tag=LPH40_03530 NZ_CP087685.1 Protein Homology CDS 862622 863875 . - 0 ID=cds-WP_038270489.1;Parent=gene-LPH40_RS03530;Dbxref=Genbank:WP_038270489.1;Name=WP_038270489.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382734.1;locus_tag=LPH40_RS03530;product=serine hydroxymethyltransferase;protein_id=WP_038270489.1;transl_table=11 NZ_CP087685.1 RefSeq gene 864396 866060 . + . ID=gene-LPH40_RS03535;Name=ettA;gbkey=Gene;gene=ettA;gene_biotype=protein_coding;locus_tag=LPH40_RS03535;old_locus_tag=LPH40_03535 NZ_CP087685.1 Protein Homology CDS 864396 866060 . + 0 ID=cds-WP_038270488.1;Parent=gene-LPH40_RS03535;Dbxref=Genbank:WP_038270488.1;Name=WP_038270488.1;Ontology_term=GO:0045900,GO:0005524;gbkey=CDS;gene=ettA;go_function=ATP binding|0005524||IEA;go_process=negative regulation of translational elongation|0045900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019398294.1;locus_tag=LPH40_RS03535;product=energy-dependent translational throttle protein EttA;protein_id=WP_038270488.1;transl_table=11 NZ_CP087685.1 RefSeq gene 866833 868521 . + . ID=gene-LPH40_RS03540;Name=mqo;gbkey=Gene;gene=mqo;gene_biotype=protein_coding;locus_tag=LPH40_RS03540;old_locus_tag=LPH40_03540 NZ_CP087685.1 Protein Homology CDS 866833 868521 . + 0 ID=cds-WP_038270487.1;Parent=gene-LPH40_RS03540;Dbxref=Genbank:WP_038270487.1;Name=WP_038270487.1;Ontology_term=GO:0006099,GO:0008924;gbkey=CDS;gene=mqo;go_function=malate dehydrogenase (quinone) activity|0008924||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851597.1;locus_tag=LPH40_RS03540;product=malate dehydrogenase (quinone);protein_id=WP_038270487.1;transl_table=11 NZ_CP087685.1 RefSeq gene 868701 869126 . - . ID=gene-LPH40_RS03545;Name=LPH40_RS03545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03545;old_locus_tag=LPH40_03545 NZ_CP087685.1 Protein Homology CDS 868701 869126 . - 0 ID=cds-WP_038270486.1;Parent=gene-LPH40_RS03545;Dbxref=Genbank:WP_038270486.1;Name=WP_038270486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086425.1;locus_tag=LPH40_RS03545;product=thiol-disulfide oxidoreductase DCC family protein;protein_id=WP_038270486.1;transl_table=11 NZ_CP087685.1 RefSeq gene 869615 870397 . - . ID=gene-LPH40_RS03550;Name=pgeF;gbkey=Gene;gene=pgeF;gene_biotype=protein_coding;locus_tag=LPH40_RS03550;old_locus_tag=LPH40_03550 NZ_CP087685.1 Protein Homology CDS 869615 870397 . - 0 ID=cds-WP_038270485.1;Parent=gene-LPH40_RS03550;Dbxref=Genbank:WP_038270485.1;Name=WP_038270485.1;gbkey=CDS;gene=pgeF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851595.1;locus_tag=LPH40_RS03550;product=peptidoglycan editing factor PgeF;protein_id=WP_038270485.1;transl_table=11 NZ_CP087685.1 RefSeq gene 870405 871382 . - . ID=gene-LPH40_RS03555;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=LPH40_RS03555;old_locus_tag=LPH40_03555 NZ_CP087685.1 Protein Homology CDS 870405 871382 . - 0 ID=cds-WP_038270484.1;Parent=gene-LPH40_RS03555;Dbxref=Genbank:WP_038270484.1;Name=WP_038270484.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089658.1;locus_tag=LPH40_RS03555;product=23S rRNA pseudouridine(1911/1915/1917) synthase RluD;protein_id=WP_038270484.1;transl_table=11 NZ_CP087685.1 RefSeq gene 871497 872375 . + . ID=gene-LPH40_RS03560;Name=LPH40_RS03560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03560;old_locus_tag=LPH40_03560 NZ_CP087685.1 Protein Homology CDS 871497 872375 . + 0 ID=cds-WP_038270483.1;Parent=gene-LPH40_RS03560;Dbxref=Genbank:WP_038270483.1;Name=WP_038270483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089657.1;locus_tag=LPH40_RS03560;product=outer membrane protein assembly factor BamD;protein_id=WP_038270483.1;transl_table=11 NZ_CP087685.1 RefSeq gene 873508 873756 . - . ID=gene-LPH40_RS03565;Name=LPH40_RS03565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03565;old_locus_tag=LPH40_03565 NZ_CP087685.1 Protein Homology CDS 873508 873756 . - 0 ID=cds-WP_038270481.1;Parent=gene-LPH40_RS03565;Dbxref=Genbank:WP_038270481.1;Name=WP_038270481.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086434.1;locus_tag=LPH40_RS03565;product=hypothetical protein;protein_id=WP_038270481.1;transl_table=11 NZ_CP087685.1 RefSeq gene 873760 875610 . - . ID=gene-LPH40_RS03570;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=LPH40_RS03570;old_locus_tag=LPH40_03570 NZ_CP087685.1 Protein Homology CDS 873760 875610 . - 0 ID=cds-WP_038270480.1;Parent=gene-LPH40_RS03570;Dbxref=Genbank:WP_038270480.1;Name=WP_038270480.1;Ontology_term=GO:0006826,GO:0015093;gbkey=CDS;gene=feoB;go_function=ferrous iron transmembrane transporter activity|0015093||IEA;go_process=iron ion transport|0006826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851591.1;locus_tag=LPH40_RS03570;product=ferrous iron transport protein B;protein_id=WP_038270480.1;transl_table=11 NZ_CP087685.1 RefSeq gene 875607 875855 . - . ID=gene-LPH40_RS03575;Name=LPH40_RS03575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03575;old_locus_tag=LPH40_03575 NZ_CP087685.1 Protein Homology CDS 875607 875855 . - 0 ID=cds-WP_038270479.1;Parent=gene-LPH40_RS03575;Dbxref=Genbank:WP_038270479.1;Name=WP_038270479.1;Ontology_term=GO:0046914;gbkey=CDS;go_function=transition metal ion binding|0046914||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893451.1;locus_tag=LPH40_RS03575;product=FeoA domain-containing protein;protein_id=WP_038270479.1;transl_table=11 NZ_CP087685.1 RefSeq gene 878016 878792 . - . ID=gene-LPH40_RS03580;Name=LPH40_RS03580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03580;old_locus_tag=LPH40_03580 NZ_CP087685.1 Protein Homology CDS 878016 878792 . - 0 ID=cds-WP_038270571.1;Parent=gene-LPH40_RS03580;Dbxref=Genbank:WP_038270571.1;Name=WP_038270571.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903673.1;locus_tag=LPH40_RS03580;product=SDR family oxidoreductase;protein_id=WP_038270571.1;transl_table=11 NZ_CP087685.1 RefSeq gene 880221 880655 . - . ID=gene-LPH40_RS03585;Name=LPH40_RS03585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03585;old_locus_tag=LPH40_03585 NZ_CP087685.1 Protein Homology CDS 880221 880655 . - 0 ID=cds-WP_038270476.1;Parent=gene-LPH40_RS03585;Dbxref=Genbank:WP_038270476.1;Name=WP_038270476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901612.1;locus_tag=LPH40_RS03585;product=ClpXP protease specificity-enhancing factor;protein_id=WP_038270476.1;transl_table=11 NZ_CP087685.1 RefSeq gene 880692 881327 . - . ID=gene-LPH40_RS03590;Name=LPH40_RS03590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03590;old_locus_tag=LPH40_03590 NZ_CP087685.1 Protein Homology CDS 880692 881327 . - 0 ID=cds-WP_038270475.1;Parent=gene-LPH40_RS03590;Dbxref=Genbank:WP_038270475.1;Name=WP_038270475.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004152019.1;locus_tag=LPH40_RS03590;product=glutathione S-transferase N-terminal domain-containing protein;protein_id=WP_038270475.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 881484 882208 . - . ID=gene-LPH40_RS03595;Name=LPH40_RS03595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS03595;old_locus_tag=LPH40_03595;pseudo=true NZ_CP087685.1 Protein Homology CDS 881484 882208 . - 0 ID=cds-LPH40_RS03595;Parent=gene-LPH40_RS03595;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098246.1;locus_tag=LPH40_RS03595;product=cytochrome c1;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 882201 883459 . - . ID=gene-LPH40_RS03600;Name=LPH40_RS03600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS03600;old_locus_tag=LPH40_03600;pseudo=true NZ_CP087685.1 Protein Homology CDS 882201 883459 . - 0 ID=cds-LPH40_RS03600;Parent=gene-LPH40_RS03600;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965674.1;locus_tag=LPH40_RS03600;product=cytochrome bc complex cytochrome b subunit;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 883490 884050 . - . ID=gene-LPH40_RS03605;Name=petA;gbkey=Gene;gene=petA;gene_biotype=pseudogene;locus_tag=LPH40_RS03605;old_locus_tag=LPH40_03605;partial=true;pseudo=true;start_range=.,883490 NZ_CP087685.1 Protein Homology CDS 883490 884050 . - 0 ID=cds-LPH40_RS03605;Parent=gene-LPH40_RS03605;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0009060,GO:0008121,GO:0009055,GO:0045275;gbkey=CDS;gene=petA;go_component=respiratory chain complex III|0045275||IEA;go_function=ubiquinol-cytochrome-c reductase activity|0008121||IEA,electron transfer activity|0009055||IEA;go_process=aerobic respiration|0009060||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010382428.1;locus_tag=LPH40_RS03605;partial=true;product=ubiquinol-cytochrome c reductase iron-sulfur subunit;pseudo=true;start_range=.,883490;transl_table=11 NZ_CP087685.1 RefSeq gene 884231 885139 . - . ID=gene-LPH40_RS03610;Name=LPH40_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03610;old_locus_tag=LPH40_03610 NZ_CP087685.1 Protein Homology CDS 884231 885139 . - 0 ID=cds-WP_038270474.1;Parent=gene-LPH40_RS03610;Dbxref=Genbank:WP_038270474.1;Name=WP_038270474.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089613.1;locus_tag=LPH40_RS03610;product=lytic transglycosylase domain-containing protein;protein_id=WP_038270474.1;transl_table=11 NZ_CP087685.1 RefSeq gene 885308 886801 . + . ID=gene-LPH40_RS03615;Name=miaB;gbkey=Gene;gene=miaB;gene_biotype=protein_coding;locus_tag=LPH40_RS03615;old_locus_tag=LPH40_03615 NZ_CP087685.1 Protein Homology CDS 885308 886801 . + 0 ID=cds-WP_038270473.1;Parent=gene-LPH40_RS03615;Dbxref=Genbank:WP_038270473.1;Name=WP_038270473.1;Ontology_term=GO:0006400,GO:0016782,GO:0051539,GO:1904047;gbkey=CDS;gene=miaB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851569.1;locus_tag=LPH40_RS03615;product=tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB;protein_id=WP_038270473.1;transl_table=11 NZ_CP087685.1 RefSeq gene 887145 888128 . + . ID=gene-LPH40_RS03620;Name=LPH40_RS03620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03620;old_locus_tag=LPH40_03620 NZ_CP087685.1 Protein Homology CDS 887145 888128 . + 0 ID=cds-WP_038270472.1;Parent=gene-LPH40_RS03620;Dbxref=Genbank:WP_038270472.1;Name=WP_038270472.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851568.1;locus_tag=LPH40_RS03620;product=PhoH family protein;protein_id=WP_038270472.1;transl_table=11 NZ_CP087685.1 RefSeq gene 888199 888681 . + . ID=gene-LPH40_RS03625;Name=ybeY;gbkey=Gene;gene=ybeY;gene_biotype=protein_coding;locus_tag=LPH40_RS03625;old_locus_tag=LPH40_03625 NZ_CP087685.1 Protein Homology CDS 888199 888681 . + 0 ID=cds-WP_038270471.1;Parent=gene-LPH40_RS03625;Dbxref=Genbank:WP_038270471.1;Name=WP_038270471.1;Ontology_term=GO:0042254,GO:0004540,GO:0046872;gbkey=CDS;gene=ybeY;go_function=ribonuclease activity|0004540||IEA,metal ion binding|0046872||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571323.1;locus_tag=LPH40_RS03625;product=rRNA maturation RNase YbeY;protein_id=WP_038270471.1;transl_table=11 NZ_CP087685.1 RefSeq gene 888681 889196 . + . ID=gene-LPH40_RS03630;Name=LPH40_RS03630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03630;old_locus_tag=LPH40_03630 NZ_CP087685.1 Protein Homology CDS 888681 889196 . + 0 ID=cds-WP_038270470.1;Parent=gene-LPH40_RS03630;Dbxref=Genbank:WP_038270470.1;Name=WP_038270470.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851567.1;locus_tag=LPH40_RS03630;product=hypothetical protein;protein_id=WP_038270470.1;transl_table=11 NZ_CP087685.1 RefSeq gene 889295 890176 . + . ID=gene-LPH40_RS03635;Name=LPH40_RS03635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03635;old_locus_tag=LPH40_03635 NZ_CP087685.1 Protein Homology CDS 889295 890176 . + 0 ID=cds-WP_038270469.1;Parent=gene-LPH40_RS03635;Dbxref=Genbank:WP_038270469.1;Name=WP_038270469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488337.1;locus_tag=LPH40_RS03635;product=HlyC/CorC family transporter;protein_id=WP_038270469.1;transl_table=11 NZ_CP087685.1 RefSeq gene 890227 891399 . + . ID=gene-LPH40_RS03640;Name=LPH40_RS03640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03640;old_locus_tag=LPH40_03640 NZ_CP087685.1 Protein Homology CDS 890227 891399 . + 0 ID=cds-WP_230428299.1;Parent=gene-LPH40_RS03640;Dbxref=Genbank:WP_230428299.1;Name=WP_230428299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851565.1;locus_tag=LPH40_RS03640;product=DUF4105 domain-containing protein;protein_id=WP_230428299.1;transl_table=11 NZ_CP087685.1 RefSeq gene 891396 892409 . + . ID=gene-LPH40_RS03645;Name=LPH40_RS03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03645;old_locus_tag=LPH40_03645 NZ_CP087685.1 Protein Homology CDS 891396 892409 . + 0 ID=cds-WP_038270467.1;Parent=gene-LPH40_RS03645;Dbxref=Genbank:WP_038270467.1;Name=WP_038270467.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893420.1;locus_tag=LPH40_RS03645;product=magnesium and cobalt transport protein CorA;protein_id=WP_038270467.1;transl_table=11 NZ_CP087685.1 RefSeq gene 892870 893382 . + . ID=gene-LPH40_RS03650;Name=LPH40_RS03650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03650;old_locus_tag=LPH40_03650 NZ_CP087685.1 GeneMarkS-2+ CDS 892870 893382 . + 0 ID=cds-WP_230428245.1;Parent=gene-LPH40_RS03650;Dbxref=Genbank:WP_230428245.1;Name=WP_230428245.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03650;product=hypothetical protein;protein_id=WP_230428245.1;transl_table=11 NZ_CP087685.1 RefSeq gene 893768 894586 . - . ID=gene-LPH40_RS03655;Name=LPH40_RS03655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03655;old_locus_tag=LPH40_03655 NZ_CP087685.1 Protein Homology CDS 893768 894586 . - 0 ID=cds-WP_038270465.1;Parent=gene-LPH40_RS03655;Dbxref=Genbank:WP_038270465.1;Name=WP_038270465.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098252.1;locus_tag=LPH40_RS03655;product=DUF769 domain-containing protein;protein_id=WP_038270465.1;transl_table=11 NZ_CP087685.1 RefSeq gene 894595 895413 . - . ID=gene-LPH40_RS03660;Name=LPH40_RS03660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03660;old_locus_tag=LPH40_03660 NZ_CP087685.1 Protein Homology CDS 894595 895413 . - 0 ID=cds-WP_038270464.1;Parent=gene-LPH40_RS03660;Dbxref=Genbank:WP_038270464.1;Name=WP_038270464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089585.1;locus_tag=LPH40_RS03660;product=DUF769 domain-containing protein;protein_id=WP_038270464.1;transl_table=11 NZ_CP087685.1 RefSeq gene 895419 904007 . - . ID=gene-LPH40_RS03665;Name=LPH40_RS03665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03665;old_locus_tag=LPH40_03665 NZ_CP087685.1 Protein Homology CDS 895419 904007 . - 0 ID=cds-WP_171898062.1;Parent=gene-LPH40_RS03665;Dbxref=Genbank:WP_171898062.1;Name=WP_171898062.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024728.2;locus_tag=LPH40_RS03665;product=hemagglutinin repeat-containing protein;protein_id=WP_171898062.1;transl_table=11 NZ_CP087685.1 RefSeq gene 903967 905337 . - . ID=gene-LPH40_RS03670;Name=LPH40_RS03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03670;old_locus_tag=LPH40_03670 NZ_CP087685.1 Protein Homology CDS 903967 905337 . - 0 ID=cds-WP_171898063.1;Parent=gene-LPH40_RS03670;Dbxref=Genbank:WP_171898063.1;Name=WP_171898063.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017658.2;locus_tag=LPH40_RS03670;product=filamentous hemagglutinin N-terminal domain-containing protein;protein_id=WP_171898063.1;transl_table=11 NZ_CP087685.1 RefSeq gene 905361 907103 . - . ID=gene-LPH40_RS03675;Name=LPH40_RS03675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03675;old_locus_tag=LPH40_03675 NZ_CP087685.1 Protein Homology CDS 905361 907103 . - 0 ID=cds-WP_038272757.1;Parent=gene-LPH40_RS03675;Dbxref=Genbank:WP_038272757.1;Name=WP_038272757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382766.1;locus_tag=LPH40_RS03675;product=ShlB/FhaC/HecB family hemolysin secretion/activation protein;protein_id=WP_038272757.1;transl_table=11 NZ_CP087685.1 RefSeq gene 908037 910499 . - . ID=gene-LPH40_RS03680;Name=LPH40_RS03680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03680;old_locus_tag=LPH40_03680 NZ_CP087685.1 Protein Homology CDS 908037 910499 . - 0 ID=cds-WP_051482380.1;Parent=gene-LPH40_RS03680;Dbxref=Genbank:WP_051482380.1;Name=WP_051482380.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116881.1;locus_tag=LPH40_RS03680;product=prolyl oligopeptidase family serine peptidase;protein_id=WP_051482380.1;transl_table=11 NZ_CP087685.1 RefSeq gene 910747 913467 . - . ID=gene-LPH40_RS03685;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=LPH40_RS03685;old_locus_tag=LPH40_03685 NZ_CP087685.1 Protein Homology CDS 910747 913467 . - 0 ID=cds-WP_038272755.1;Parent=gene-LPH40_RS03685;Dbxref=Genbank:WP_038272755.1;Name=WP_038272755.1;Ontology_term=GO:0006259,GO:0006265,GO:0003677,GO:0003916,GO:0003918,GO:0005524;gbkey=CDS;gene=gyrA;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA metabolic process|0006259||IEA,DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851247.1;locus_tag=LPH40_RS03685;product=DNA gyrase subunit A;protein_id=WP_038272755.1;transl_table=11 NZ_CP087685.1 RefSeq gene 913668 914732 . - . ID=gene-LPH40_RS03690;Name=mtnA;gbkey=Gene;gene=mtnA;gene_biotype=protein_coding;locus_tag=LPH40_RS03690;old_locus_tag=LPH40_03690 NZ_CP087685.1 Protein Homology CDS 913668 914732 . - 0 ID=cds-WP_038272761.1;Parent=gene-LPH40_RS03690;Dbxref=Genbank:WP_038272761.1;Name=WP_038272761.1;Ontology_term=GO:0019509,GO:0046523;gbkey=CDS;gene=mtnA;go_function=S-methyl-5-thioribose-1-phosphate isomerase activity|0046523||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051043.1;locus_tag=LPH40_RS03690;product=S-methyl-5-thioribose-1-phosphate isomerase;protein_id=WP_038272761.1;transl_table=11 NZ_CP087685.1 RefSeq gene 914877 915557 . - . ID=gene-LPH40_RS03695;Name=LPH40_RS03695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03695;old_locus_tag=LPH40_03695 NZ_CP087685.1 Protein Homology CDS 914877 915557 . - 0 ID=cds-WP_069636222.1;Parent=gene-LPH40_RS03695;Dbxref=Genbank:WP_069636222.1;Name=WP_069636222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894975.1;locus_tag=LPH40_RS03695;product=DUF3011 domain-containing protein;protein_id=WP_069636222.1;transl_table=11 NZ_CP087685.1 RefSeq gene 915758 916708 . - . ID=gene-LPH40_RS03700;Name=epmA;gbkey=Gene;gene=epmA;gene_biotype=protein_coding;locus_tag=LPH40_RS03700;old_locus_tag=LPH40_03700 NZ_CP087685.1 Protein Homology CDS 915758 916708 . - 0 ID=cds-WP_114867184.1;Parent=gene-LPH40_RS03700;Dbxref=Genbank:WP_114867184.1;Name=WP_114867184.1;Ontology_term=GO:0006430,GO:0000166,GO:0004824,GO:0005524;gbkey=CDS;gene=epmA;go_function=nucleotide binding|0000166||IEA,lysine-tRNA ligase activity|0004824||IEA,ATP binding|0005524||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084622.1;locus_tag=LPH40_RS03700;product=EF-P lysine aminoacylase EpmA;protein_id=WP_114867184.1;transl_table=11 NZ_CP087685.1 RefSeq gene 916705 917178 . - . ID=gene-LPH40_RS03705;Name=LPH40_RS03705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03705;old_locus_tag=LPH40_03705 NZ_CP087685.1 Protein Homology CDS 916705 917178 . - 0 ID=cds-WP_038272751.1;Parent=gene-LPH40_RS03705;Dbxref=Genbank:WP_038272751.1;Name=WP_038272751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338106.1;locus_tag=LPH40_RS03705;product=GNAT family N-acetyltransferase;protein_id=WP_038272751.1;transl_table=11 NZ_CP087685.1 RefSeq gene 917189 919684 . - . ID=gene-LPH40_RS03710;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=LPH40_RS03710;old_locus_tag=LPH40_03710 NZ_CP087685.1 Protein Homology CDS 917189 919684 . - 0 ID=cds-WP_038272750.1;Parent=gene-LPH40_RS03710;Dbxref=Genbank:WP_038272750.1;Name=WP_038272750.1;Ontology_term=GO:0006260,GO:0006281,GO:0003677,GO:0003911;gbkey=CDS;gene=ligA;go_function=DNA binding|0003677||IEA,DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090351.1;locus_tag=LPH40_RS03710;product=NAD-dependent DNA ligase LigA;protein_id=WP_038272750.1;transl_table=11 NZ_CP087685.1 RefSeq gene 920445 920675 . - . ID=gene-LPH40_RS03715;Name=LPH40_RS03715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03715;old_locus_tag=LPH40_03715 NZ_CP087685.1 GeneMarkS-2+ CDS 920445 920675 . - 0 ID=cds-WP_038272749.1;Parent=gene-LPH40_RS03715;Dbxref=Genbank:WP_038272749.1;Name=WP_038272749.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03715;product=hypothetical protein;protein_id=WP_038272749.1;transl_table=11 NZ_CP087685.1 RefSeq gene 920942 921673 . - . ID=gene-LPH40_RS03720;Name=zipA;gbkey=Gene;gene=zipA;gene_biotype=protein_coding;locus_tag=LPH40_RS03720;old_locus_tag=LPH40_03720 NZ_CP087685.1 Protein Homology CDS 920942 921673 . - 0 ID=cds-WP_038272747.1;Parent=gene-LPH40_RS03720;Dbxref=Genbank:WP_038272747.1;Name=WP_038272747.1;Ontology_term=GO:0000917,GO:0005515;gbkey=CDS;gene=zipA;go_function=protein binding|0005515||IEA;go_process=division septum assembly|0000917||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903841.1;locus_tag=LPH40_RS03720;product=cell division protein ZipA;protein_id=WP_038272747.1;transl_table=11 NZ_CP087685.1 RefSeq gene 921731 925234 . - . ID=gene-LPH40_RS03725;Name=smc;gbkey=Gene;gene=smc;gene_biotype=protein_coding;locus_tag=LPH40_RS03725;old_locus_tag=LPH40_03725 NZ_CP087685.1 Protein Homology CDS 921731 925234 . - 0 ID=cds-WP_114867185.1;Parent=gene-LPH40_RS03725;Dbxref=Genbank:WP_114867185.1;Name=WP_114867185.1;Ontology_term=GO:0007059,GO:0030261,GO:0005524;gbkey=CDS;gene=smc;go_function=ATP binding|0005524||IEA;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084630.1;locus_tag=LPH40_RS03725;product=chromosome segregation protein SMC;protein_id=WP_114867185.1;transl_table=11 NZ_CP087685.1 RefSeq gene 925451 925900 . - . ID=gene-LPH40_RS03730;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=LPH40_RS03730;old_locus_tag=LPH40_03730 NZ_CP087685.1 Protein Homology CDS 925451 925900 . - 0 ID=cds-WP_038271671.1;Parent=gene-LPH40_RS03730;Dbxref=Genbank:WP_038271671.1;Name=WP_038271671.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplI;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014160531.1;locus_tag=LPH40_RS03730;product=50S ribosomal protein L9;protein_id=WP_038271671.1;transl_table=11 NZ_CP087685.1 RefSeq gene 926055 926285 . - . ID=gene-LPH40_RS03735;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=LPH40_RS03735;old_locus_tag=LPH40_03735 NZ_CP087685.1 Protein Homology CDS 926055 926285 . - 0 ID=cds-WP_038271673.1;Parent=gene-LPH40_RS03735;Dbxref=Genbank:WP_038271673.1;Name=WP_038271673.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsR;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804494.1;locus_tag=LPH40_RS03735;product=30S ribosomal protein S18;protein_id=WP_038271673.1;transl_table=11 NZ_CP087685.1 RefSeq gene 926298 926729 . - . ID=gene-LPH40_RS03740;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=LPH40_RS03740;old_locus_tag=LPH40_03740 NZ_CP087685.1 Protein Homology CDS 926298 926729 . - 0 ID=cds-WP_038271676.1;Parent=gene-LPH40_RS03740;Dbxref=Genbank:WP_038271676.1;Name=WP_038271676.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsF;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090345.1;locus_tag=LPH40_RS03740;product=30S ribosomal protein S6;protein_id=WP_038271676.1;transl_table=11 NZ_CP087685.1 RefSeq gene 926955 927293 . - . ID=gene-LPH40_RS03745;Name=LPH40_RS03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03745;old_locus_tag=LPH40_03745 NZ_CP087685.1 Protein Homology CDS 926955 927293 . - 0 ID=cds-WP_038271677.1;Parent=gene-LPH40_RS03745;Dbxref=Genbank:WP_038271677.1;Name=WP_038271677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660371.1;locus_tag=LPH40_RS03745;product=iron-sulfur cluster assembly accessory protein;protein_id=WP_038271677.1;transl_table=11 NZ_CP087685.1 RefSeq gene 927512 928912 . + . ID=gene-LPH40_RS03750;Name=asnS;gbkey=Gene;gene=asnS;gene_biotype=protein_coding;locus_tag=LPH40_RS03750;old_locus_tag=LPH40_03750 NZ_CP087685.1 Protein Homology CDS 927512 928912 . + 0 ID=cds-WP_038271678.1;Parent=gene-LPH40_RS03750;Dbxref=Genbank:WP_038271678.1;Name=WP_038271678.1;Ontology_term=GO:0006421,GO:0004816,GO:0005524;gbkey=CDS;gene=asnS;go_function=asparagine-tRNA ligase activity|0004816||IEA,ATP binding|0005524||IEA;go_process=asparaginyl-tRNA aminoacylation|0006421||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237793.1;locus_tag=LPH40_RS03750;product=asparagine--tRNA ligase;protein_id=WP_038271678.1;transl_table=11 NZ_CP087685.1 RefSeq gene 930263 931063 . + . ID=gene-LPH40_RS03755;Name=LPH40_RS03755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03755;old_locus_tag=LPH40_03755 NZ_CP087685.1 Protein Homology CDS 930263 931063 . + 0 ID=cds-WP_230428246.1;Parent=gene-LPH40_RS03755;Dbxref=Genbank:WP_230428246.1;Name=WP_230428246.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607499.1;locus_tag=LPH40_RS03755;product=ABC transporter permease;protein_id=WP_230428246.1;transl_table=11 NZ_CP087685.1 RefSeq gene 931073 931813 . + . ID=gene-LPH40_RS03760;Name=LPH40_RS03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03760;old_locus_tag=LPH40_03760 NZ_CP087685.1 Protein Homology CDS 931073 931813 . + 0 ID=cds-WP_038271683.1;Parent=gene-LPH40_RS03760;Dbxref=Genbank:WP_038271683.1;Name=WP_038271683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851969.1;locus_tag=LPH40_RS03760;product=ABC transporter ATP-binding protein;protein_id=WP_038271683.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 932151 932436 . + . ID=gene-LPH40_RS03765;Name=LPH40_RS03765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS03765;old_locus_tag=LPH40_03765;pseudo=true NZ_CP087685.1 Protein Homology CDS 932151 932436 . + 0 ID=cds-LPH40_RS03765;Parent=gene-LPH40_RS03765;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894989.1;locus_tag=LPH40_RS03765;product=DUF4190 domain-containing protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 932730 933785 . + . ID=gene-LPH40_RS03770;Name=LPH40_RS03770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03770;old_locus_tag=LPH40_03770 NZ_CP087685.1 Protein Homology CDS 932730 933785 . + 0 ID=cds-WP_038271686.1;Parent=gene-LPH40_RS03770;Dbxref=Genbank:WP_038271686.1;Name=WP_038271686.1;Ontology_term=GO:0006222,GO:0004152,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=dihydroorotate dehydrogenase activity|0004152||IEA;go_process=UMP biosynthetic process|0006222||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851254.1;locus_tag=LPH40_RS03770;product=quinone-dependent dihydroorotate dehydrogenase;protein_id=WP_038271686.1;transl_table=11 NZ_CP087685.1 RefSeq gene 933782 934837 . + . ID=gene-LPH40_RS03775;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=LPH40_RS03775;old_locus_tag=LPH40_03775 NZ_CP087685.1 Protein Homology CDS 933782 934837 . + 0 ID=cds-WP_038271688.1;Parent=gene-LPH40_RS03775;Dbxref=Genbank:WP_038271688.1;Name=WP_038271688.1;Ontology_term=GO:0008762,GO:0071949;gbkey=CDS;gene=murB;go_function=UDP-N-acetylmuramate dehydrogenase activity|0008762||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084645.1;locus_tag=LPH40_RS03775;product=UDP-N-acetylmuramate dehydrogenase;protein_id=WP_038271688.1;transl_table=11 NZ_CP087685.1 RefSeq gene 934831 935730 . + . ID=gene-LPH40_RS03780;Name=LPH40_RS03780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03780;old_locus_tag=LPH40_03780 NZ_CP087685.1 Protein Homology CDS 934831 935730 . + 0 ID=cds-WP_038271689.1;Parent=gene-LPH40_RS03780;Dbxref=Genbank:WP_038271689.1;Name=WP_038271689.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851255.1;locus_tag=LPH40_RS03780;product=DMT family transporter;protein_id=WP_038271689.1;transl_table=11 NZ_CP087685.1 RefSeq gene 935738 936442 . - . ID=gene-LPH40_RS03785;Name=LPH40_RS03785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03785;old_locus_tag=LPH40_03785 NZ_CP087685.1 Protein Homology CDS 935738 936442 . - 0 ID=cds-WP_038271691.1;Parent=gene-LPH40_RS03785;Dbxref=Genbank:WP_038271691.1;Name=WP_038271691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894993.1;locus_tag=LPH40_RS03785;product=phosphatase PAP2 family protein;protein_id=WP_038271691.1;transl_table=11 NZ_CP087685.1 RefSeq gene 936423 937688 . - . ID=gene-LPH40_RS03790;Name=ispG;gbkey=Gene;gene=ispG;gene_biotype=protein_coding;gene_synonym=gcpE;locus_tag=LPH40_RS03790;old_locus_tag=LPH40_03790 NZ_CP087685.1 Protein Homology CDS 936423 937688 . - 0 ID=cds-WP_038271693.1;Parent=gene-LPH40_RS03790;Dbxref=Genbank:WP_038271693.1;Name=WP_038271693.1;Ontology_term=GO:0044237,GO:0046429;gbkey=CDS;gene=ispG;go_function=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|0046429||IEA;go_process=cellular metabolic process|0044237||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183267.1;locus_tag=LPH40_RS03790;product=flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase;protein_id=WP_038271693.1;transl_table=11 NZ_CP087685.1 RefSeq gene 937911 939128 . + . ID=gene-LPH40_RS03795;Name=LPH40_RS03795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03795;old_locus_tag=LPH40_03795 NZ_CP087685.1 Protein Homology CDS 937911 939128 . + 0 ID=cds-WP_038271694.1;Parent=gene-LPH40_RS03795;Dbxref=Genbank:WP_038271694.1;Name=WP_038271694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894996.1;locus_tag=LPH40_RS03795;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_038271694.1;transl_table=11 NZ_CP087685.1 RefSeq gene 939125 939703 . + . ID=gene-LPH40_RS03800;Name=LPH40_RS03800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03800;old_locus_tag=LPH40_03800 NZ_CP087685.1 Protein Homology CDS 939125 939703 . + 0 ID=cds-WP_038271696.1;Parent=gene-LPH40_RS03800;Dbxref=Genbank:WP_038271696.1;Name=WP_038271696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090324.1;locus_tag=LPH40_RS03800;product=response regulator transcription factor;protein_id=WP_038271696.1;transl_table=11 NZ_CP087685.1 RefSeq gene 940257 941135 . - . ID=gene-LPH40_RS03805;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=LPH40_RS03805;old_locus_tag=LPH40_03805 NZ_CP087685.1 Protein Homology CDS 940257 941135 . - 0 ID=cds-WP_038271698.1;Parent=gene-LPH40_RS03805;Dbxref=Genbank:WP_038271698.1;Name=WP_038271698.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tsf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962895.1;locus_tag=LPH40_RS03805;product=translation elongation factor Ts;protein_id=WP_038271698.1;transl_table=11 NZ_CP087685.1 RefSeq gene 941328 942125 . - . ID=gene-LPH40_RS03810;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=LPH40_RS03810;old_locus_tag=LPH40_03810 NZ_CP087685.1 Protein Homology CDS 941328 942125 . - 0 ID=cds-WP_038271700.1;Parent=gene-LPH40_RS03810;Dbxref=Genbank:WP_038271700.1;Name=WP_038271700.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsB;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084652.1;locus_tag=LPH40_RS03810;product=30S ribosomal protein S2;protein_id=WP_038271700.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 942603 942755 . + . ID=gene-LPH40_RS03815;Name=LPH40_RS03815;end_range=942755,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS03815;old_locus_tag=LPH40_03815;partial=true;pseudo=true;start_range=.,942603 NZ_CP087685.1 Protein Homology CDS 942603 942755 . + 0 ID=cds-LPH40_RS03815;Parent=gene-LPH40_RS03815;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=942755,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LPH40_RS03815;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,942603;transl_table=11 NZ_CP087685.1 RefSeq gene 943058 943135 . + . ID=gene-LPH40_RS03820;Name=LPH40_RS03820;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS03820;old_locus_tag=LPH40_03820 NZ_CP087685.1 tRNAscan-SE tRNA 943058 943135 . + . ID=rna-LPH40_RS03820;Parent=gene-LPH40_RS03820;anticodon=(pos:943093..943095);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS03820;product=tRNA-Arg NZ_CP087685.1 tRNAscan-SE exon 943058 943135 . + . ID=exon-LPH40_RS03820-1;Parent=rna-LPH40_RS03820;anticodon=(pos:943093..943095);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS03820;product=tRNA-Arg NZ_CP087685.1 RefSeq gene 943558 945318 . + . ID=gene-LPH40_RS03825;Name=LPH40_RS03825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03825;old_locus_tag=LPH40_03825 NZ_CP087685.1 Protein Homology CDS 943558 945318 . + 0 ID=cds-WP_038271705.1;Parent=gene-LPH40_RS03825;Dbxref=Genbank:WP_038271705.1;Name=WP_038271705.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084653.1;locus_tag=LPH40_RS03825;product=ABC transporter ATP-binding protein/permease;protein_id=WP_038271705.1;transl_table=11 NZ_CP087685.1 RefSeq gene 945725 945937 . - . ID=gene-LPH40_RS03830;Name=LPH40_RS03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03830;old_locus_tag=LPH40_03830 NZ_CP087685.1 GeneMarkS-2+ CDS 945725 945937 . - 0 ID=cds-WP_038271708.1;Parent=gene-LPH40_RS03830;Dbxref=Genbank:WP_038271708.1;Name=WP_038271708.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03830;product=hypothetical protein;protein_id=WP_038271708.1;transl_table=11 NZ_CP087685.1 RefSeq gene 946566 946808 . + . ID=gene-LPH40_RS03835;Name=LPH40_RS03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03835;old_locus_tag=LPH40_03835 NZ_CP087685.1 GeneMarkS-2+ CDS 946566 946808 . + 0 ID=cds-WP_160165195.1;Parent=gene-LPH40_RS03835;Dbxref=Genbank:WP_160165195.1;Name=WP_160165195.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03835;product=hypothetical protein;protein_id=WP_160165195.1;transl_table=11 NZ_CP087685.1 RefSeq gene 947245 947901 . + . ID=gene-LPH40_RS03840;Name=LPH40_RS03840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03840;old_locus_tag=LPH40_03840 NZ_CP087685.1 Protein Homology CDS 947245 947901 . + 0 ID=cds-WP_038271715.1;Parent=gene-LPH40_RS03840;Dbxref=Genbank:WP_038271715.1;Name=WP_038271715.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804883.1;locus_tag=LPH40_RS03840;product=protein-L-isoaspartate O-methyltransferase;protein_id=WP_038271715.1;transl_table=11 NZ_CP087685.1 RefSeq gene 947924 949282 . + . ID=gene-LPH40_RS03845;Name=LPH40_RS03845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03845;old_locus_tag=LPH40_03845 NZ_CP087685.1 Protein Homology CDS 947924 949282 . + 0 ID=cds-WP_038271718.1;Parent=gene-LPH40_RS03845;Dbxref=Genbank:WP_038271718.1;Name=WP_038271718.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852053.1;locus_tag=LPH40_RS03845;product=TolC family outer membrane protein;protein_id=WP_038271718.1;transl_table=11 NZ_CP087685.1 RefSeq gene 950032 950784 . - . ID=gene-LPH40_RS03850;Name=lpxH;gbkey=Gene;gene=lpxH;gene_biotype=protein_coding;locus_tag=LPH40_RS03850;old_locus_tag=LPH40_03850 NZ_CP087685.1 Protein Homology CDS 950032 950784 . - 0 ID=cds-WP_038271721.1;Parent=gene-LPH40_RS03850;Dbxref=Genbank:WP_038271721.1;Name=WP_038271721.1;Ontology_term=GO:0009245,GO:0008758;gbkey=CDS;gene=lpxH;go_function=UDP-2%2C3-diacylglucosamine hydrolase activity|0008758||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084656.1;locus_tag=LPH40_RS03850;product=UDP-2%2C3-diacylglucosamine diphosphatase;protein_id=WP_038271721.1;transl_table=11 NZ_CP087685.1 RefSeq gene 951890 953416 . - . ID=gene-LPH40_RS03855;Name=ppx;gbkey=Gene;gene=ppx;gene_biotype=protein_coding;locus_tag=LPH40_RS03855;old_locus_tag=LPH40_03855 NZ_CP087685.1 Protein Homology CDS 951890 953416 . - 0 ID=cds-WP_038271776.1;Parent=gene-LPH40_RS03855;Dbxref=Genbank:WP_038271776.1;Name=WP_038271776.1;Ontology_term=GO:0006798,GO:0000287,GO:0004309;gbkey=CDS;gene=ppx;go_function=magnesium ion binding|0000287||IEA,exopolyphosphatase activity|0004309||IEA;go_process=polyphosphate catabolic process|0006798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895008.1;locus_tag=LPH40_RS03855;product=exopolyphosphatase;protein_id=WP_038271776.1;transl_table=11 NZ_CP087685.1 RefSeq gene 953485 955581 . - . ID=gene-LPH40_RS03860;Name=ppk1;gbkey=Gene;gene=ppk1;gene_biotype=protein_coding;locus_tag=LPH40_RS03860;old_locus_tag=LPH40_03860 NZ_CP087685.1 Protein Homology CDS 953485 955581 . - 0 ID=cds-WP_160199336.1;Parent=gene-LPH40_RS03860;Dbxref=Genbank:WP_160199336.1;Name=WP_160199336.1;Ontology_term=GO:0006799,GO:0008976,GO:0009358;gbkey=CDS;gene=ppk1;go_component=polyphosphate kinase complex|0009358||IEA;go_function=polyphosphate kinase activity|0008976||IEA;go_process=polyphosphate biosynthetic process|0006799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895009.1;locus_tag=LPH40_RS03860;product=polyphosphate kinase 1;protein_id=WP_160199336.1;transl_table=11 NZ_CP087685.1 RefSeq gene 955686 957029 . - . ID=gene-LPH40_RS03865;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=LPH40_RS03865;old_locus_tag=LPH40_03865 NZ_CP087685.1 Protein Homology CDS 955686 957029 . - 0 ID=cds-WP_038271726.1;Parent=gene-LPH40_RS03865;Dbxref=Genbank:WP_038271726.1;Name=WP_038271726.1;Ontology_term=GO:0000160,GO:0006796,GO:0000155;gbkey=CDS;gene=phoR;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852050.1;locus_tag=LPH40_RS03865;product=phosphate regulon sensor histidine kinase PhoR;protein_id=WP_038271726.1;transl_table=11 NZ_CP087685.1 RefSeq gene 957053 957742 . - . ID=gene-LPH40_RS03870;Name=phoB;gbkey=Gene;gene=phoB;gene_biotype=protein_coding;locus_tag=LPH40_RS03870;old_locus_tag=LPH40_03870 NZ_CP087685.1 Protein Homology CDS 957053 957742 . - 0 ID=cds-WP_038271729.1;Parent=gene-LPH40_RS03870;Dbxref=Genbank:WP_038271729.1;Name=WP_038271729.1;Ontology_term=GO:0000160,GO:0006355,GO:0006796,GO:0000156,GO:0003700;gbkey=CDS;gene=phoB;go_function=phosphorelay response regulator activity|0000156||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341114.1;locus_tag=LPH40_RS03870;product=phosphate regulon transcriptional regulator PhoB;protein_id=WP_038271729.1;transl_table=11 NZ_CP087685.1 RefSeq gene 957824 959458 . - . ID=gene-LPH40_RS03875;Name=LPH40_RS03875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03875;old_locus_tag=LPH40_03875 NZ_CP087685.1 Protein Homology CDS 957824 959458 . - 0 ID=cds-WP_038271732.1;Parent=gene-LPH40_RS03875;Dbxref=Genbank:WP_038271732.1;Name=WP_038271732.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098320.1;locus_tag=LPH40_RS03875;product=M48 family metalloprotease;protein_id=WP_038271732.1;transl_table=11 NZ_CP087685.1 RefSeq gene 959579 959884 . + . ID=gene-LPH40_RS03880;Name=grxC;gbkey=Gene;gene=grxC;gene_biotype=protein_coding;locus_tag=LPH40_RS03880;old_locus_tag=LPH40_03880 NZ_CP087685.1 Protein Homology CDS 959579 959884 . + 0 ID=cds-WP_038271736.1;Parent=gene-LPH40_RS03880;Dbxref=Genbank:WP_038271736.1;Name=WP_038271736.1;Ontology_term=GO:0015036;gbkey=CDS;gene=grxC;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084662.1;locus_tag=LPH40_RS03880;product=glutaredoxin 3;protein_id=WP_038271736.1;transl_table=11 NZ_CP087685.1 RefSeq gene 960771 961778 . + . ID=gene-LPH40_RS03885;Name=LPH40_RS03885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03885;old_locus_tag=LPH40_03885 NZ_CP087685.1 Protein Homology CDS 960771 961778 . + 0 ID=cds-WP_038271738.1;Parent=gene-LPH40_RS03885;Dbxref=Genbank:WP_038271738.1;Name=WP_038271738.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852046.1;locus_tag=LPH40_RS03885;product=isocitrate dehydrogenase;protein_id=WP_038271738.1;transl_table=11 NZ_CP087685.1 RefSeq gene 962187 962753 . - . ID=gene-LPH40_RS03890;Name=LPH40_RS03890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03890;old_locus_tag=LPH40_03890 NZ_CP087685.1 Protein Homology CDS 962187 962753 . - 0 ID=cds-WP_038271778.1;Parent=gene-LPH40_RS03890;Dbxref=Genbank:WP_038271778.1;Name=WP_038271778.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084664.1;locus_tag=LPH40_RS03890;product=DUF4019 domain-containing protein;protein_id=WP_038271778.1;transl_table=11 NZ_CP087685.1 RefSeq gene 963744 964262 . + . ID=gene-LPH40_RS03895;Name=LPH40_RS03895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03895;old_locus_tag=LPH40_03895 NZ_CP087685.1 Protein Homology CDS 963744 964262 . + 0 ID=cds-WP_038271739.1;Parent=gene-LPH40_RS03895;Dbxref=Genbank:WP_038271739.1;Name=WP_038271739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087533.1;locus_tag=LPH40_RS03895;product=methylated-DNA--[protein]-cysteine S-methyltransferase;protein_id=WP_038271739.1;transl_table=11 NZ_CP087685.1 RefSeq gene 964291 965592 . + . ID=gene-LPH40_RS03900;Name=LPH40_RS03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03900;old_locus_tag=LPH40_03900 NZ_CP087685.1 Protein Homology CDS 964291 965592 . + 0 ID=cds-WP_038271742.1;Parent=gene-LPH40_RS03900;Dbxref=Genbank:WP_038271742.1;Name=WP_038271742.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087534.1;locus_tag=LPH40_RS03900;product=ectonucleotide pyrophosphatase/phosphodiesterase;protein_id=WP_038271742.1;transl_table=11 NZ_CP087685.1 RefSeq gene 965912 966235 . + . ID=gene-LPH40_RS03905;Name=LPH40_RS03905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03905;old_locus_tag=LPH40_03905 NZ_CP087685.1 Protein Homology CDS 965912 966235 . + 0 ID=cds-WP_081755460.1;Parent=gene-LPH40_RS03905;Dbxref=Genbank:WP_081755460.1;Name=WP_081755460.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994928.1;locus_tag=LPH40_RS03905;product=ferredoxin family protein;protein_id=WP_081755460.1;transl_table=11 NZ_CP087685.1 RefSeq gene 966870 968357 . - . ID=gene-LPH40_RS03910;Name=LPH40_RS03910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03910;old_locus_tag=LPH40_03910 NZ_CP087685.1 Protein Homology CDS 966870 968357 . - 0 ID=cds-WP_038271747.1;Parent=gene-LPH40_RS03910;Dbxref=Genbank:WP_038271747.1;Name=WP_038271747.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852042.1;locus_tag=LPH40_RS03910;product=hypothetical protein;protein_id=WP_038271747.1;transl_table=11 NZ_CP087685.1 RefSeq gene 968476 969075 . - . ID=gene-LPH40_RS03915;Name=LPH40_RS03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03915;old_locus_tag=LPH40_03915 NZ_CP087685.1 Protein Homology CDS 968476 969075 . - 0 ID=cds-WP_038271749.1;Parent=gene-LPH40_RS03915;Dbxref=Genbank:WP_038271749.1;Name=WP_038271749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410314.1;locus_tag=LPH40_RS03915;product=NfuA family Fe-S biogenesis protein;protein_id=WP_038271749.1;transl_table=11 NZ_CP087685.1 RefSeq gene 969161 969511 . + . ID=gene-LPH40_RS03920;Name=LPH40_RS03920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03920;old_locus_tag=LPH40_03920 NZ_CP087685.1 Protein Homology CDS 969161 969511 . + 0 ID=cds-WP_038271751.1;Parent=gene-LPH40_RS03920;Dbxref=Genbank:WP_038271751.1;Name=WP_038271751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087537.1;locus_tag=LPH40_RS03920;product=4a-hydroxytetrahydrobiopterin dehydratase;protein_id=WP_038271751.1;transl_table=11 NZ_CP087685.1 RefSeq gene 969519 969932 . + . ID=gene-LPH40_RS03925;Name=LPH40_RS03925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03925;old_locus_tag=LPH40_03925 NZ_CP087685.1 Protein Homology CDS 969519 969932 . + 0 ID=cds-WP_038271753.1;Parent=gene-LPH40_RS03925;Dbxref=Genbank:WP_038271753.1;Name=WP_038271753.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338113.1;locus_tag=LPH40_RS03925;product=energy transducer TonB;protein_id=WP_038271753.1;transl_table=11 NZ_CP087685.1 RefSeq gene 970204 970389 . + . ID=gene-LPH40_RS03930;Name=LPH40_RS03930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03930;old_locus_tag=LPH40_03930 NZ_CP087685.1 GeneMarkS-2+ CDS 970204 970389 . + 0 ID=cds-WP_081755461.1;Parent=gene-LPH40_RS03930;Dbxref=Genbank:WP_081755461.1;Name=WP_081755461.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS03930;product=hypothetical protein;protein_id=WP_081755461.1;transl_table=11 NZ_CP087685.1 RefSeq gene 970903 971895 . - . ID=gene-LPH40_RS03935;Name=LPH40_RS03935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03935;old_locus_tag=LPH40_03935 NZ_CP087685.1 Protein Homology CDS 970903 971895 . - 0 ID=cds-WP_051482353.1;Parent=gene-LPH40_RS03935;Dbxref=Genbank:WP_051482353.1;Name=WP_051482353.1;Ontology_term=GO:0001522,GO:0009451,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852040.1;locus_tag=LPH40_RS03935;product=RluA family pseudouridine synthase;protein_id=WP_051482353.1;transl_table=11 NZ_CP087685.1 RefSeq gene 972297 975701 . + . ID=gene-LPH40_RS03940;Name=LPH40_RS03940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03940;old_locus_tag=LPH40_03940 NZ_CP087685.1 Protein Homology CDS 972297 975701 . + 0 ID=cds-WP_038271755.1;Parent=gene-LPH40_RS03940;Dbxref=Genbank:WP_038271755.1;Name=WP_038271755.1;Ontology_term=GO:0006401,GO:0004540;gbkey=CDS;go_function=ribonuclease activity|0004540||IEA;go_process=RNA catabolic process|0006401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895025.1;locus_tag=LPH40_RS03940;product=Rne/Rng family ribonuclease;protein_id=WP_038271755.1;transl_table=11 NZ_CP087685.1 RefSeq gene 976406 977053 . - . ID=gene-LPH40_RS03945;Name=LPH40_RS03945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03945;old_locus_tag=LPH40_03945 NZ_CP087685.1 Protein Homology CDS 976406 977053 . - 0 ID=cds-WP_038271757.1;Parent=gene-LPH40_RS03945;Dbxref=Genbank:WP_038271757.1;Name=WP_038271757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408972.1;locus_tag=LPH40_RS03945;product=response regulator transcription factor;protein_id=WP_038271757.1;transl_table=11 NZ_CP087685.1 RefSeq gene 977320 978078 . - . ID=gene-LPH40_RS03950;Name=LPH40_RS03950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03950;old_locus_tag=LPH40_03950 NZ_CP087685.1 Protein Homology CDS 977320 978078 . - 0 ID=cds-WP_038271783.1;Parent=gene-LPH40_RS03950;Dbxref=Genbank:WP_038271783.1;Name=WP_038271783.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031337128.1;locus_tag=LPH40_RS03950;product=sulfurtransferase;protein_id=WP_038271783.1;transl_table=11 NZ_CP087685.1 RefSeq gene 979760 980158 . + . ID=gene-LPH40_RS03955;Name=LPH40_RS03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03955;old_locus_tag=LPH40_03955 NZ_CP087685.1 Protein Homology CDS 979760 980158 . + 0 ID=cds-WP_038271784.1;Parent=gene-LPH40_RS03955;Dbxref=Genbank:WP_038271784.1;Name=WP_038271784.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338114.1;locus_tag=LPH40_RS03955;product=response regulator;protein_id=WP_038271784.1;transl_table=11 NZ_CP087685.1 RefSeq gene 981520 982131 . - . ID=gene-LPH40_RS03960;Name=LPH40_RS03960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03960;old_locus_tag=LPH40_03960 NZ_CP087685.1 Protein Homology CDS 981520 982131 . - 0 ID=cds-WP_038271760.1;Parent=gene-LPH40_RS03960;Dbxref=Genbank:WP_038271760.1;Name=WP_038271760.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037422.1;locus_tag=LPH40_RS03960;product=superoxide dismutase;protein_id=WP_038271760.1;transl_table=11 NZ_CP087685.1 RefSeq gene 982389 982823 . + . ID=gene-LPH40_RS03965;Name=LPH40_RS03965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03965;old_locus_tag=LPH40_03965 NZ_CP087685.1 Protein Homology CDS 982389 982823 . + 0 ID=cds-WP_038271763.1;Parent=gene-LPH40_RS03965;Dbxref=Genbank:WP_038271763.1;Name=WP_038271763.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450339.1;locus_tag=LPH40_RS03965;product=ribonuclease;protein_id=WP_038271763.1;transl_table=11 NZ_CP087685.1 RefSeq gene 982820 983236 . + . ID=gene-LPH40_RS03970;Name=LPH40_RS03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03970;old_locus_tag=LPH40_03970 NZ_CP087685.1 Protein Homology CDS 982820 983236 . + 0 ID=cds-WP_038271765.1;Parent=gene-LPH40_RS03970;Dbxref=Genbank:WP_038271765.1;Name=WP_038271765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852034.1;locus_tag=LPH40_RS03970;product=barstar family protein;protein_id=WP_038271765.1;transl_table=11 NZ_CP087685.1 RefSeq gene 983292 985163 . - . ID=gene-LPH40_RS03975;Name=LPH40_RS03975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03975;old_locus_tag=LPH40_03975 NZ_CP087685.1 Protein Homology CDS 983292 985163 . - 0 ID=cds-WP_038271767.1;Parent=gene-LPH40_RS03975;Dbxref=Genbank:WP_038271767.1;Name=WP_038271767.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923190.1;locus_tag=LPH40_RS03975;product=ATP-binding cassette domain-containing protein;protein_id=WP_038271767.1;transl_table=11 NZ_CP087685.1 RefSeq gene 985471 987030 . - . ID=gene-LPH40_RS03980;Name=LPH40_RS03980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03980;old_locus_tag=LPH40_03980 NZ_CP087685.1 Protein Homology CDS 985471 987030 . - 0 ID=cds-WP_038271785.1;Parent=gene-LPH40_RS03980;Dbxref=Genbank:WP_038271785.1;Name=WP_038271785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098324.1;locus_tag=LPH40_RS03980;product=YdiU family protein;protein_id=WP_038271785.1;transl_table=11 NZ_CP087685.1 RefSeq gene 987429 987641 . - . ID=gene-LPH40_RS03985;Name=LPH40_RS03985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03985;old_locus_tag=LPH40_03985 NZ_CP087685.1 Protein Homology CDS 987429 987641 . - 0 ID=cds-WP_038271770.1;Parent=gene-LPH40_RS03985;Dbxref=Genbank:WP_038271770.1;Name=WP_038271770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913053.1;locus_tag=LPH40_RS03985;product=cold-shock protein;protein_id=WP_038271770.1;transl_table=11 NZ_CP087685.1 RefSeq gene 989163 991235 . + . ID=gene-LPH40_RS03990;Name=LPH40_RS03990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS03990;old_locus_tag=LPH40_03990 NZ_CP087685.1 Protein Homology CDS 989163 991235 . + 0 ID=cds-WP_038271772.1;Parent=gene-LPH40_RS03990;Dbxref=Genbank:WP_038271772.1;Name=WP_038271772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895041.1;locus_tag=LPH40_RS03990;product=EAL domain-containing protein;protein_id=WP_038271772.1;transl_table=11 NZ_CP087685.1 RefSeq gene 991625 992494 . - . ID=gene-LPH40_RS03995;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;locus_tag=LPH40_RS03995;old_locus_tag=LPH40_03995 NZ_CP087685.1 Protein Homology CDS 991625 992494 . - 0 ID=cds-WP_038271774.1;Parent=gene-LPH40_RS03995;Dbxref=Genbank:WP_038271774.1;Name=WP_038271774.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=htpX;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084683.1;locus_tag=LPH40_RS03995;product=protease HtpX;protein_id=WP_038271774.1;transl_table=11 NZ_CP087685.1 RefSeq gene 994295 995485 . - . ID=gene-LPH40_RS04000;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=LPH40_RS04000;old_locus_tag=LPH40_04000 NZ_CP087685.1 Protein Homology CDS 994295 995485 . - 0 ID=cds-WP_038273292.1;Parent=gene-LPH40_RS04000;Dbxref=Genbank:WP_038273292.1;Name=WP_038273292.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486726.1;locus_tag=LPH40_RS04000;product=elongation factor Tu;protein_id=WP_038273292.1;transl_table=11 NZ_CP087685.1 RefSeq gene 995593 997710 . - . ID=gene-LPH40_RS04005;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=LPH40_RS04005;old_locus_tag=LPH40_04005 NZ_CP087685.1 Protein Homology CDS 995593 997710 . - 0 ID=cds-WP_038272873.1;Parent=gene-LPH40_RS04005;Dbxref=Genbank:WP_038272873.1;Name=WP_038272873.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=fusA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895046.1;locus_tag=LPH40_RS04005;product=elongation factor G;protein_id=WP_038272873.1;transl_table=11 NZ_CP087685.1 RefSeq gene 997849 998316 . - . ID=gene-LPH40_RS04010;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=LPH40_RS04010;old_locus_tag=LPH40_04010 NZ_CP087685.1 Protein Homology CDS 997849 998316 . - 0 ID=cds-WP_038272876.1;Parent=gene-LPH40_RS04010;Dbxref=Genbank:WP_038272876.1;Name=WP_038272876.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsG;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450629.1;locus_tag=LPH40_RS04010;product=30S ribosomal protein S7;protein_id=WP_038272876.1;transl_table=11 NZ_CP087685.1 RefSeq gene 998332 998706 . - . ID=gene-LPH40_RS04015;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=LPH40_RS04015;old_locus_tag=LPH40_04015 NZ_CP087685.1 Protein Homology CDS 998332 998706 . - 0 ID=cds-WP_038272877.1;Parent=gene-LPH40_RS04015;Dbxref=Genbank:WP_038272877.1;Name=WP_038272877.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsL;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003469157.1;locus_tag=LPH40_RS04015;product=30S ribosomal protein S12;protein_id=WP_038272877.1;transl_table=11 NZ_CP087685.1 RefSeq gene 998951 1003174 . - . ID=gene-LPH40_RS04020;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=LPH40_RS04020;old_locus_tag=LPH40_04020 NZ_CP087685.1 Protein Homology CDS 998951 1003174 . - 0 ID=cds-WP_038272879.1;Parent=gene-LPH40_RS04020;Dbxref=Genbank:WP_038272879.1;Name=WP_038272879.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoC;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031337137.1;locus_tag=LPH40_RS04020;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_038272879.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1003281 1007435 . - . ID=gene-LPH40_RS04025;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=LPH40_RS04025;old_locus_tag=LPH40_04025 NZ_CP087685.1 Protein Homology CDS 1003281 1007435 . - 0 ID=cds-WP_038272880.1;Parent=gene-LPH40_RS04025;Dbxref=Genbank:WP_038272880.1;Name=WP_038272880.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoB;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852081.1;locus_tag=LPH40_RS04025;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_038272880.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1007691 1008059 . - . ID=gene-LPH40_RS04030;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=LPH40_RS04030;old_locus_tag=LPH40_04030 NZ_CP087685.1 Protein Homology CDS 1007691 1008059 . - 0 ID=cds-WP_038272881.1;Parent=gene-LPH40_RS04030;Dbxref=Genbank:WP_038272881.1;Name=WP_038272881.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplL;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084690.1;locus_tag=LPH40_RS04030;product=50S ribosomal protein L7/L12;protein_id=WP_038272881.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1008114 1008641 . - . ID=gene-LPH40_RS04035;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=LPH40_RS04035;old_locus_tag=LPH40_04035 NZ_CP087685.1 Protein Homology CDS 1008114 1008641 . - 0 ID=cds-WP_038272883.1;Parent=gene-LPH40_RS04035;Dbxref=Genbank:WP_038272883.1;Name=WP_038272883.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplJ;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036116.1;locus_tag=LPH40_RS04035;product=50S ribosomal protein L10;protein_id=WP_038272883.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1009143 1009841 . - . ID=gene-LPH40_RS04040;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=LPH40_RS04040;old_locus_tag=LPH40_04040 NZ_CP087685.1 Protein Homology CDS 1009143 1009841 . - 0 ID=cds-WP_038272885.1;Parent=gene-LPH40_RS04040;Dbxref=Genbank:WP_038272885.1;Name=WP_038272885.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplA;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341341.1;locus_tag=LPH40_RS04040;product=50S ribosomal protein L1;protein_id=WP_038272885.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1009845 1010273 . - . ID=gene-LPH40_RS04045;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=LPH40_RS04045;old_locus_tag=LPH40_04045 NZ_CP087685.1 Protein Homology CDS 1009845 1010273 . - 0 ID=cds-WP_038272888.1;Parent=gene-LPH40_RS04045;Dbxref=Genbank:WP_038272888.1;Name=WP_038272888.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplK;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993334.1;locus_tag=LPH40_RS04045;product=50S ribosomal protein L11;protein_id=WP_038272888.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1010473 1011030 . - . ID=gene-LPH40_RS04050;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=LPH40_RS04050;old_locus_tag=LPH40_04050 NZ_CP087685.1 Protein Homology CDS 1010473 1011030 . - 0 ID=cds-WP_038272890.1;Parent=gene-LPH40_RS04050;Dbxref=Genbank:WP_038272890.1;Name=WP_038272890.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusG;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090734.1;locus_tag=LPH40_RS04050;product=transcription termination/antitermination protein NusG;protein_id=WP_038272890.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1011044 1011451 . - . ID=gene-LPH40_RS04055;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=LPH40_RS04055;old_locus_tag=LPH40_04055 NZ_CP087685.1 Protein Homology CDS 1011044 1011451 . - 0 ID=cds-WP_038272892.1;Parent=gene-LPH40_RS04055;Dbxref=Genbank:WP_038272892.1;Name=WP_038272892.1;gbkey=CDS;gene=secE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993330.1;locus_tag=LPH40_RS04055;product=preprotein translocase subunit SecE;protein_id=WP_038272892.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1011501 1011576 . - . ID=gene-LPH40_RS04060;Name=LPH40_RS04060;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS04060;old_locus_tag=LPH40_04060 NZ_CP087685.1 tRNAscan-SE tRNA 1011501 1011576 . - . ID=rna-LPH40_RS04060;Parent=gene-LPH40_RS04060;anticodon=(pos:complement(1011541..1011543));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04060;product=tRNA-Trp NZ_CP087685.1 tRNAscan-SE exon 1011501 1011576 . - . ID=exon-LPH40_RS04060-1;Parent=rna-LPH40_RS04060;anticodon=(pos:complement(1011541..1011543));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04060;product=tRNA-Trp NZ_CP087685.1 RefSeq gene 1011689 1012879 . - . ID=gene-LPH40_RS04065;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=LPH40_RS04065;old_locus_tag=LPH40_04065 NZ_CP087685.1 Protein Homology CDS 1011689 1012879 . - 0 ID=cds-WP_038273292.1-2;Parent=gene-LPH40_RS04065;Dbxref=Genbank:WP_038273292.1;Name=WP_038273292.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486726.1;locus_tag=LPH40_RS04065;product=elongation factor Tu;protein_id=WP_038273292.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1012920 1012995 . - . ID=gene-LPH40_RS04070;Name=LPH40_RS04070;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS04070;old_locus_tag=LPH40_04070 NZ_CP087685.1 tRNAscan-SE tRNA 1012920 1012995 . - . ID=rna-LPH40_RS04070;Parent=gene-LPH40_RS04070;anticodon=(pos:complement(1012960..1012962));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04070;product=tRNA-Thr NZ_CP087685.1 tRNAscan-SE exon 1012920 1012995 . - . ID=exon-LPH40_RS04070-1;Parent=rna-LPH40_RS04070;anticodon=(pos:complement(1012960..1012962));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04070;product=tRNA-Thr NZ_CP087685.1 RefSeq gene 1013030 1013103 . - . ID=gene-LPH40_RS04075;Name=LPH40_RS04075;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS04075;old_locus_tag=LPH40_04075 NZ_CP087685.1 tRNAscan-SE tRNA 1013030 1013103 . - . ID=rna-LPH40_RS04075;Parent=gene-LPH40_RS04075;anticodon=(pos:complement(1013069..1013071));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04075;product=tRNA-Gly NZ_CP087685.1 tRNAscan-SE exon 1013030 1013103 . - . ID=exon-LPH40_RS04075-1;Parent=rna-LPH40_RS04075;anticodon=(pos:complement(1013069..1013071));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04075;product=tRNA-Gly NZ_CP087685.1 RefSeq gene 1013138 1013224 . - . ID=gene-LPH40_RS04080;Name=LPH40_RS04080;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS04080;old_locus_tag=LPH40_04080 NZ_CP087685.1 tRNAscan-SE tRNA 1013138 1013224 . - . ID=rna-LPH40_RS04080;Parent=gene-LPH40_RS04080;anticodon=(pos:complement(1013188..1013190));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04080;product=tRNA-Tyr NZ_CP087685.1 tRNAscan-SE exon 1013138 1013224 . - . ID=exon-LPH40_RS04080-1;Parent=rna-LPH40_RS04080;anticodon=(pos:complement(1013188..1013190));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04080;product=tRNA-Tyr NZ_CP087685.1 RefSeq gene 1013418 1014509 . - . ID=gene-LPH40_RS04085;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=LPH40_RS04085;old_locus_tag=LPH40_04085 NZ_CP087685.1 Protein Homology CDS 1013418 1014509 . - 0 ID=cds-WP_038271278.1;Parent=gene-LPH40_RS04085;Dbxref=Genbank:WP_038271278.1;Name=WP_038271278.1;Ontology_term=GO:0005525;gbkey=CDS;gene=ychF;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000506572.1;locus_tag=LPH40_RS04085;product=redox-regulated ATPase YchF;protein_id=WP_038271278.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1014564 1015142 . - . ID=gene-LPH40_RS04090;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=LPH40_RS04090;old_locus_tag=LPH40_04090 NZ_CP087685.1 Protein Homology CDS 1014564 1015142 . - 0 ID=cds-WP_038271277.1;Parent=gene-LPH40_RS04090;Dbxref=Genbank:WP_038271277.1;Name=WP_038271277.1;Ontology_term=GO:0006412,GO:0004045;gbkey=CDS;gene=pth;go_function=aminoacyl-tRNA hydrolase activity|0004045||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084699.1;locus_tag=LPH40_RS04090;product=aminoacyl-tRNA hydrolase;protein_id=WP_038271277.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1015198 1015821 . - . ID=gene-LPH40_RS04095;Name=LPH40_RS04095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04095;old_locus_tag=LPH40_04095 NZ_CP087685.1 Protein Homology CDS 1015198 1015821 . - 0 ID=cds-WP_038271276.1;Parent=gene-LPH40_RS04095;Dbxref=Genbank:WP_038271276.1;Name=WP_038271276.1;Ontology_term=GO:0006412,GO:0003735,GO:0008097;gbkey=CDS;go_function=structural constituent of ribosome|0003735||IEA,5S rRNA binding|0008097||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087395.1;locus_tag=LPH40_RS04095;product=50S ribosomal protein L25/general stress protein Ctc;protein_id=WP_038271276.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1015927 1016886 . - . ID=gene-LPH40_RS04100;Name=LPH40_RS04100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04100;old_locus_tag=LPH40_04100 NZ_CP087685.1 Protein Homology CDS 1015927 1016886 . - 0 ID=cds-WP_038271290.1;Parent=gene-LPH40_RS04100;Dbxref=Genbank:WP_038271290.1;Name=WP_038271290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486761.1;locus_tag=LPH40_RS04100;product=ribose-phosphate diphosphokinase;protein_id=WP_038271290.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1017017 1017093 . - . ID=gene-LPH40_RS04105;Name=LPH40_RS04105;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS04105;old_locus_tag=LPH40_04105 NZ_CP087685.1 tRNAscan-SE tRNA 1017017 1017093 . - . ID=rna-LPH40_RS04105;Parent=gene-LPH40_RS04105;anticodon=(pos:complement(1017057..1017059));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04105;product=tRNA-Gln NZ_CP087685.1 tRNAscan-SE exon 1017017 1017093 . - . ID=exon-LPH40_RS04105-1;Parent=rna-LPH40_RS04105;anticodon=(pos:complement(1017057..1017059));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04105;product=tRNA-Gln NZ_CP087685.1 RefSeq gene 1017097 1017975 . - . ID=gene-LPH40_RS04110;Name=ispE;gbkey=Gene;gene=ispE;gene_biotype=protein_coding;locus_tag=LPH40_RS04110;old_locus_tag=LPH40_04110 NZ_CP087685.1 Protein Homology CDS 1017097 1017975 . - 0 ID=cds-WP_114867187.1;Parent=gene-LPH40_RS04110;Dbxref=Genbank:WP_114867187.1;Name=WP_114867187.1;Ontology_term=GO:0016114,GO:0050515;gbkey=CDS;gene=ispE;go_function=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity|0050515||IEA;go_process=terpenoid biosynthetic process|0016114||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084712.1;locus_tag=LPH40_RS04110;product=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase;protein_id=WP_114867187.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1017972 1018622 . - . ID=gene-LPH40_RS04115;Name=lolB;gbkey=Gene;gene=lolB;gene_biotype=protein_coding;locus_tag=LPH40_RS04115;old_locus_tag=LPH40_04115 NZ_CP087685.1 Protein Homology CDS 1017972 1018622 . - 0 ID=cds-WP_160199309.1;Parent=gene-LPH40_RS04115;Dbxref=Genbank:WP_160199309.1;Name=WP_160199309.1;Ontology_term=GO:0009306,GO:0008320;gbkey=CDS;gene=lolB;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087398.1;locus_tag=LPH40_RS04115;product=lipoprotein insertase outer membrane protein LolB;protein_id=WP_160199309.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1018619 1020298 . - . ID=gene-LPH40_RS04120;Name=LPH40_RS04120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04120;old_locus_tag=LPH40_04120 NZ_CP087685.1 Protein Homology CDS 1018619 1020298 . - 0 ID=cds-WP_038271275.1;Parent=gene-LPH40_RS04120;Dbxref=Genbank:WP_038271275.1;Name=WP_038271275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972526.1;locus_tag=LPH40_RS04120;product=membrane protein;protein_id=WP_038271275.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1020365 1021663 . + . ID=gene-LPH40_RS04125;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=LPH40_RS04125;old_locus_tag=LPH40_04125 NZ_CP087685.1 Protein Homology CDS 1020365 1021663 . + 0 ID=cds-WP_038271288.1;Parent=gene-LPH40_RS04125;Dbxref=Genbank:WP_038271288.1;Name=WP_038271288.1;Ontology_term=GO:0006779,GO:0008883,GO:0005737;gbkey=CDS;gene=hemA;go_component=cytoplasm|0005737||IEA;go_function=glutamyl-tRNA reductase activity|0008883||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852071.1;locus_tag=LPH40_RS04125;product=glutamyl-tRNA reductase;protein_id=WP_038271288.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1021641 1022726 . + . ID=gene-LPH40_RS04130;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=LPH40_RS04130;old_locus_tag=LPH40_04130 NZ_CP087685.1 Protein Homology CDS 1021641 1022726 . + 0 ID=cds-WP_038271274.1;Parent=gene-LPH40_RS04130;Dbxref=Genbank:WP_038271274.1;Name=WP_038271274.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfA;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300176.1;locus_tag=LPH40_RS04130;product=peptide chain release factor 1;protein_id=WP_038271274.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1024534 1024665 . + . ID=gene-LPH40_RS11965;Name=LPH40_RS11965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11965 NZ_CP087685.1 GeneMarkS-2+ CDS 1024534 1024665 . + 0 ID=cds-WP_267903160.1;Parent=gene-LPH40_RS11965;Dbxref=Genbank:WP_267903160.1;Name=WP_267903160.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11965;product=hypothetical protein;protein_id=WP_267903160.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1025398 1027572 . - . ID=gene-LPH40_RS04135;Name=rlmKL;gbkey=Gene;gene=rlmKL;gene_biotype=protein_coding;locus_tag=LPH40_RS04135;old_locus_tag=LPH40_04135 NZ_CP087685.1 Protein Homology CDS 1025398 1027572 . - 0 ID=cds-WP_114867227.1;Parent=gene-LPH40_RS04135;Dbxref=Genbank:WP_114867227.1;Name=WP_114867227.1;Ontology_term=GO:0031167,GO:0003723,GO:0008990;gbkey=CDS;gene=rlmKL;go_function=RNA binding|0003723||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852069.1;locus_tag=LPH40_RS04135;product=bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL;protein_id=WP_114867227.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1027904 1028038 . - . ID=gene-LPH40_RS11970;Name=LPH40_RS11970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11970 NZ_CP087685.1 GeneMarkS-2+ CDS 1027904 1028038 . - 0 ID=cds-WP_267903162.1;Parent=gene-LPH40_RS11970;Dbxref=Genbank:WP_267903162.1;Name=WP_267903162.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11970;product=hypothetical protein;protein_id=WP_267903162.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1028438 1028965 . - . ID=gene-LPH40_RS04140;Name=LPH40_RS04140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04140;old_locus_tag=LPH40_04140 NZ_CP087685.1 Protein Homology CDS 1028438 1028965 . - 0 ID=cds-WP_038271270.1;Parent=gene-LPH40_RS04140;Dbxref=Genbank:WP_038271270.1;Name=WP_038271270.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966252.1;locus_tag=LPH40_RS04140;product=alpha/beta hydrolase;protein_id=WP_038271270.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1029359 1029928 . + . ID=gene-LPH40_RS04145;Name=LPH40_RS04145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04145;old_locus_tag=LPH40_04145 NZ_CP087685.1 Protein Homology CDS 1029359 1029928 . + 0 ID=cds-WP_038271269.1;Parent=gene-LPH40_RS04145;Dbxref=Genbank:WP_038271269.1;Name=WP_038271269.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084727.1;locus_tag=LPH40_RS04145;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_038271269.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1030048 1030206 . - . ID=gene-LPH40_RS04150;Name=LPH40_RS04150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04150;old_locus_tag=LPH40_04150 NZ_CP087685.1 GeneMarkS-2+ CDS 1030048 1030206 . - 0 ID=cds-WP_160165177.1;Parent=gene-LPH40_RS04150;Dbxref=Genbank:WP_160165177.1;Name=WP_160165177.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04150;product=hypothetical protein;protein_id=WP_160165177.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1031067 1031282 . + . ID=gene-LPH40_RS04155;Name=LPH40_RS04155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04155;old_locus_tag=LPH40_04155 NZ_CP087685.1 GeneMarkS-2+ CDS 1031067 1031282 . + 0 ID=cds-WP_152536619.1;Parent=gene-LPH40_RS04155;Dbxref=Genbank:WP_152536619.1;Name=WP_152536619.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04155;product=hypothetical protein;protein_id=WP_152536619.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1031345 1031542 . + . ID=gene-LPH40_RS04160;Name=LPH40_RS04160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04160;old_locus_tag=LPH40_04160 NZ_CP087685.1 GeneMarkS-2+ CDS 1031345 1031542 . + 0 ID=cds-WP_038271268.1;Parent=gene-LPH40_RS04160;Dbxref=Genbank:WP_038271268.1;Name=WP_038271268.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04160;product=hypothetical protein;protein_id=WP_038271268.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1031895 1032107 . - . ID=gene-LPH40_RS04165;Name=LPH40_RS04165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04165;old_locus_tag=LPH40_04165 NZ_CP087685.1 GeneMarkS-2+ CDS 1031895 1032107 . - 0 ID=cds-WP_152536618.1;Parent=gene-LPH40_RS04165;Dbxref=Genbank:WP_152536618.1;Name=WP_152536618.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04165;product=hypothetical protein;protein_id=WP_152536618.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1032453 1032752 . + . ID=gene-LPH40_RS04170;Name=LPH40_RS04170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04170;old_locus_tag=LPH40_04170 NZ_CP087685.1 GeneMarkS-2+ CDS 1032453 1032752 . + 0 ID=cds-WP_051482316.1;Parent=gene-LPH40_RS04170;Dbxref=Genbank:WP_051482316.1;Name=WP_051482316.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04170;product=hypothetical protein;protein_id=WP_051482316.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1032880 1033059 . + . ID=gene-LPH40_RS04175;Name=LPH40_RS04175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04175;old_locus_tag=LPH40_04175 NZ_CP087685.1 GeneMarkS-2+ CDS 1032880 1033059 . + 0 ID=cds-WP_230428248.1;Parent=gene-LPH40_RS04175;Dbxref=Genbank:WP_230428248.1;Name=WP_230428248.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04175;product=hypothetical protein;protein_id=WP_230428248.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1033353 1035203 . + . ID=gene-LPH40_RS04180;Name=LPH40_RS04180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04180;old_locus_tag=LPH40_04180 NZ_CP087685.1 Protein Homology CDS 1033353 1035203 . + 0 ID=cds-WP_038271265.1;Parent=gene-LPH40_RS04180;Dbxref=Genbank:WP_038271265.1;Name=WP_038271265.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024573.2;locus_tag=LPH40_RS04180;product=ATP-binding protein;protein_id=WP_038271265.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1035362 1035586 . + . ID=gene-LPH40_RS04185;Name=LPH40_RS04185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04185;old_locus_tag=LPH40_04185 NZ_CP087685.1 GeneMarkS-2+ CDS 1035362 1035586 . + 0 ID=cds-WP_038271264.1;Parent=gene-LPH40_RS04185;Dbxref=Genbank:WP_038271264.1;Name=WP_038271264.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04185;product=hypothetical protein;protein_id=WP_038271264.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1035605 1035978 . + . ID=gene-LPH40_RS04190;Name=LPH40_RS04190;end_range=1035978,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS04190;old_locus_tag=LPH40_04190;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1035605 1035978 . + 0 ID=cds-LPH40_RS04190;Parent=gene-LPH40_RS04190;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1035978,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1;locus_tag=LPH40_RS04190;partial=true;product=recombinase family protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1036444 1037202 . + . ID=gene-LPH40_RS04195;Name=LPH40_RS04195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04195;old_locus_tag=LPH40_04195 NZ_CP087685.1 Protein Homology CDS 1036444 1037202 . + 0 ID=cds-WP_038271262.1;Parent=gene-LPH40_RS04195;Dbxref=Genbank:WP_038271262.1;Name=WP_038271262.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012707.2;locus_tag=LPH40_RS04195;product=transporter substrate-binding domain-containing protein;protein_id=WP_038271262.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1037228 1037923 . + . ID=gene-LPH40_RS04200;Name=LPH40_RS04200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04200;old_locus_tag=LPH40_04200 NZ_CP087685.1 Protein Homology CDS 1037228 1037923 . + 0 ID=cds-WP_038271261.1;Parent=gene-LPH40_RS04200;Dbxref=Genbank:WP_038271261.1;Name=WP_038271261.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012738.2;locus_tag=LPH40_RS04200;product=amino acid ABC transporter permease;protein_id=WP_038271261.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1037901 1038620 . + . ID=gene-LPH40_RS04205;Name=LPH40_RS04205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04205;old_locus_tag=LPH40_04205 NZ_CP087685.1 Protein Homology CDS 1037901 1038620 . + 0 ID=cds-WP_038271260.1;Parent=gene-LPH40_RS04205;Dbxref=Genbank:WP_038271260.1;Name=WP_038271260.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012235.2;locus_tag=LPH40_RS04205;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_038271260.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1038627 1039292 . + . ID=gene-LPH40_RS04210;Name=LPH40_RS04210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04210;old_locus_tag=LPH40_04210 NZ_CP087685.1 Protein Homology CDS 1038627 1039292 . + 0 ID=cds-WP_038271259.1;Parent=gene-LPH40_RS04210;Dbxref=Genbank:WP_038271259.1;Name=WP_038271259.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012738.2;locus_tag=LPH40_RS04210;product=amino acid ABC transporter permease;protein_id=WP_038271259.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1039279 1039638 . - . ID=gene-LPH40_RS04215;Name=LPH40_RS04215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04215;old_locus_tag=LPH40_04215 NZ_CP087685.1 Protein Homology CDS 1039279 1039638 . - 0 ID=cds-WP_268746647.1;Parent=gene-LPH40_RS04215;Dbxref=Genbank:WP_268746647.1;Name=WP_268746647.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: protein motif:HMM:NF012789.2;locus_tag=LPH40_RS04215;product=UvrD-helicase domain-containing protein;protein_id=WP_268746647.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1039883 1040125 . - . ID=gene-LPH40_RS04220;Name=LPH40_RS04220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04220;old_locus_tag=LPH40_04220 NZ_CP087685.1 Protein Homology CDS 1039883 1040125 . - 0 ID=cds-WP_051482315.1;Parent=gene-LPH40_RS04220;Dbxref=Genbank:WP_051482315.1;Name=WP_051482315.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012789.2;locus_tag=LPH40_RS04220;product=AAA family ATPase;protein_id=WP_051482315.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1040828 1041424 . - . ID=gene-LPH40_RS04225;Name=LPH40_RS04225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04225;old_locus_tag=LPH40_04225 NZ_CP087685.1 Protein Homology CDS 1040828 1041424 . - 0 ID=cds-WP_038271287.1;Parent=gene-LPH40_RS04225;Dbxref=Genbank:WP_038271287.1;Name=WP_038271287.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895080.1;locus_tag=LPH40_RS04225;product=YhgN family NAAT transporter;protein_id=WP_038271287.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1042088 1042408 . - . ID=gene-LPH40_RS04230;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=LPH40_RS04230;old_locus_tag=LPH40_04230 NZ_CP087685.1 Protein Homology CDS 1042088 1042408 . - 0 ID=cds-WP_038271257.1;Parent=gene-LPH40_RS04230;Dbxref=Genbank:WP_038271257.1;Name=WP_038271257.1;Ontology_term=GO:0009055;gbkey=CDS;gene=grxD;go_function=electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485599.1;locus_tag=LPH40_RS04230;product=Grx4 family monothiol glutaredoxin;protein_id=WP_038271257.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1043105 1044289 . - . ID=gene-LPH40_RS04235;Name=LPH40_RS04235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04235;old_locus_tag=LPH40_04235 NZ_CP087685.1 Protein Homology CDS 1043105 1044289 . - 0 ID=cds-WP_038271256.1;Parent=gene-LPH40_RS04235;Dbxref=Genbank:WP_038271256.1;Name=WP_038271256.1;Ontology_term=GO:0006189,GO:0004638,GO:0005524,GO:0046872;gbkey=CDS;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852058.1;locus_tag=LPH40_RS04235;product=5-(carboxyamino)imidazole ribonucleotide synthase;protein_id=WP_038271256.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1044286 1044789 . - . ID=gene-LPH40_RS04240;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=LPH40_RS04240;old_locus_tag=LPH40_04240 NZ_CP087685.1 Protein Homology CDS 1044286 1044789 . - 0 ID=cds-WP_038271255.1;Parent=gene-LPH40_RS04240;Dbxref=Genbank:WP_038271255.1;Name=WP_038271255.1;Ontology_term=GO:0009152,GO:0004638,GO:0009320;gbkey=CDS;gene=purE;go_component=phosphoribosylaminoimidazole carboxylase complex|0009320||IEA;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003468225.1;locus_tag=LPH40_RS04240;product=5-(carboxyamino)imidazole ribonucleotide mutase;protein_id=WP_038271255.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1044852 1045121 . + . ID=gene-LPH40_RS04245;Name=LPH40_RS04245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04245;old_locus_tag=LPH40_04245 NZ_CP087685.1 Protein Homology CDS 1044852 1045121 . + 0 ID=cds-WP_038271254.1;Parent=gene-LPH40_RS04245;Dbxref=Genbank:WP_038271254.1;Name=WP_038271254.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008570984.1;locus_tag=LPH40_RS04245;product=Trm112 family protein;protein_id=WP_038271254.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1045882 1046949 . + . ID=gene-LPH40_RS04250;Name=LPH40_RS04250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04250;old_locus_tag=LPH40_04250 NZ_CP087685.1 Protein Homology CDS 1045882 1046949 . + 0 ID=cds-WP_081755437.1;Parent=gene-LPH40_RS04250;Dbxref=Genbank:WP_081755437.1;Name=WP_081755437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895089.1;locus_tag=LPH40_RS04250;product=DUF2272 domain-containing protein;protein_id=WP_081755437.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1047775 1048062 . + . ID=gene-LPH40_RS04255;Name=LPH40_RS04255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04255;old_locus_tag=LPH40_04255 NZ_CP087685.1 GeneMarkS-2+ CDS 1047775 1048062 . + 0 ID=cds-WP_051482314.1;Parent=gene-LPH40_RS04255;Dbxref=Genbank:WP_051482314.1;Name=WP_051482314.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04255;product=hypothetical protein;protein_id=WP_051482314.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1049303 1051537 . - . ID=gene-LPH40_RS04260;Name=LPH40_RS04260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04260;old_locus_tag=LPH40_04260 NZ_CP087685.1 Protein Homology CDS 1049303 1051537 . - 0 ID=cds-WP_230428249.1;Parent=gene-LPH40_RS04260;Dbxref=Genbank:WP_230428249.1;Name=WP_230428249.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087420.1;locus_tag=LPH40_RS04260;product=multicopper oxidase family protein;protein_id=WP_230428249.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1053450 1054823 . - . ID=gene-LPH40_RS04265;Name=LPH40_RS04265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04265;old_locus_tag=LPH40_04265 NZ_CP087685.1 Protein Homology CDS 1053450 1054823 . - 0 ID=cds-WP_038271253.1;Parent=gene-LPH40_RS04265;Dbxref=Genbank:WP_038271253.1;Name=WP_038271253.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895093.1;locus_tag=LPH40_RS04265;product=virulence factor family protein;protein_id=WP_038271253.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1056805 1058781 . - . ID=gene-LPH40_RS04270;Name=rep;gbkey=Gene;gene=rep;gene_biotype=protein_coding;locus_tag=LPH40_RS04270;old_locus_tag=LPH40_04270 NZ_CP087685.1 Protein Homology CDS 1056805 1058781 . - 0 ID=cds-WP_038271284.1;Parent=gene-LPH40_RS04270;Dbxref=Genbank:WP_038271284.1;Name=WP_038271284.1;Ontology_term=GO:0006310,GO:0003678;gbkey=CDS;gene=rep;go_function=DNA helicase activity|0003678||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091509.1;locus_tag=LPH40_RS04270;product=DNA helicase Rep;protein_id=WP_038271284.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1059339 1059503 . + . ID=gene-LPH40_RS04275;Name=LPH40_RS04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04275;old_locus_tag=LPH40_04275 NZ_CP087685.1 GeneMarkS-2+ CDS 1059339 1059503 . + 0 ID=cds-WP_230430684.1;Parent=gene-LPH40_RS04275;Dbxref=Genbank:WP_230430684.1;Name=WP_230430684.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04275;product=hypothetical protein;protein_id=WP_230430684.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1059716 1061323 . - . ID=gene-LPH40_RS04280;Name=LPH40_RS04280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04280;old_locus_tag=LPH40_04280 NZ_CP087685.1 Protein Homology CDS 1059716 1061323 . - 0 ID=cds-WP_038271252.1;Parent=gene-LPH40_RS04280;Dbxref=Genbank:WP_038271252.1;Name=WP_038271252.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091511.1;locus_tag=LPH40_RS04280;product=glucan biosynthesis protein;protein_id=WP_038271252.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1062264 1064165 . - . ID=gene-LPH40_RS04285;Name=sppA;gbkey=Gene;gene=sppA;gene_biotype=protein_coding;locus_tag=LPH40_RS04285;old_locus_tag=LPH40_04285 NZ_CP087685.1 Protein Homology CDS 1062264 1064165 . - 0 ID=cds-WP_038271251.1;Parent=gene-LPH40_RS04285;Dbxref=Genbank:WP_038271251.1;Name=WP_038271251.1;Ontology_term=GO:0006465,GO:0006508,GO:0008233,GO:0016020;gbkey=CDS;gene=sppA;go_component=membrane|0016020||IEA;go_function=peptidase activity|0008233||IEA;go_process=signal peptide processing|0006465||IEA,proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087426.1;locus_tag=LPH40_RS04285;product=signal peptide peptidase SppA;protein_id=WP_038271251.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1064249 1065610 . - . ID=gene-LPH40_RS04290;Name=LPH40_RS04290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04290;old_locus_tag=LPH40_04290 NZ_CP087685.1 Protein Homology CDS 1064249 1065610 . - 0 ID=cds-WP_038271250.1;Parent=gene-LPH40_RS04290;Dbxref=Genbank:WP_038271250.1;Name=WP_038271250.1;Ontology_term=GO:0006855,GO:0009410,GO:0042910,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic transmembrane transport|0006855||IEA,response to xenobiotic stimulus|0009410||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087427.1;locus_tag=LPH40_RS04290;product=MATE family efflux transporter;protein_id=WP_038271250.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1065969 1066439 . - . ID=gene-LPH40_RS04295;Name=LPH40_RS04295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04295;old_locus_tag=LPH40_04295 NZ_CP087685.1 Protein Homology CDS 1065969 1066439 . - 0 ID=cds-WP_230428250.1;Parent=gene-LPH40_RS04295;Dbxref=Genbank:WP_230428250.1;Name=WP_230428250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895101.1;locus_tag=LPH40_RS04295;product=DUF3106 domain-containing protein;protein_id=WP_230428250.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1066535 1067494 . - . ID=gene-LPH40_RS04300;Name=LPH40_RS04300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04300;old_locus_tag=LPH40_04300 NZ_CP087685.1 Protein Homology CDS 1066535 1067494 . - 0 ID=cds-WP_038271248.1;Parent=gene-LPH40_RS04300;Dbxref=Genbank:WP_038271248.1;Name=WP_038271248.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087429.1;locus_tag=LPH40_RS04300;product=hypothetical protein;protein_id=WP_038271248.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1067932 1070124 . + . ID=gene-LPH40_RS04305;Name=LPH40_RS04305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04305;old_locus_tag=LPH40_04305 NZ_CP087685.1 Protein Homology CDS 1067932 1070124 . + 0 ID=cds-WP_038271247.1;Parent=gene-LPH40_RS04305;Dbxref=Genbank:WP_038271247.1;Name=WP_038271247.1;Ontology_term=GO:0006260,GO:0032508,GO:0003678;gbkey=CDS;go_function=DNA helicase activity|0003678||IEA;go_process=DNA replication|0006260||IEA,DNA duplex unwinding|0032508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167545.1;locus_tag=LPH40_RS04305;product=primosomal protein N';protein_id=WP_038271247.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1071064 1071930 . - . ID=gene-LPH40_RS04310;Name=rpoH;gbkey=Gene;gene=rpoH;gene_biotype=protein_coding;locus_tag=LPH40_RS04310;old_locus_tag=LPH40_04310 NZ_CP087685.1 Protein Homology CDS 1071064 1071930 . - 0 ID=cds-WP_038271246.1;Parent=gene-LPH40_RS04310;Dbxref=Genbank:WP_038271246.1;Name=WP_038271246.1;Ontology_term=GO:0006352,GO:0016987;gbkey=CDS;gene=rpoH;go_function=sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803651.1;locus_tag=LPH40_RS04310;product=RNA polymerase sigma factor RpoH;protein_id=WP_038271246.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1072074 1072814 . - . ID=gene-LPH40_RS04315;Name=ung;gbkey=Gene;gene=ung;gene_biotype=protein_coding;locus_tag=LPH40_RS04315;old_locus_tag=LPH40_04315 NZ_CP087685.1 Protein Homology CDS 1072074 1072814 . - 0 ID=cds-WP_038271245.1;Parent=gene-LPH40_RS04315;Dbxref=Genbank:WP_038271245.1;Name=WP_038271245.1;Ontology_term=GO:0006284,GO:0004844,GO:0016799;gbkey=CDS;gene=ung;go_function=uracil DNA N-glycosylase activity|0004844||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157034.1;locus_tag=LPH40_RS04315;product=uracil-DNA glycosylase;protein_id=WP_038271245.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1072820 1073668 . - . ID=gene-LPH40_RS04320;Name=LPH40_RS04320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04320;old_locus_tag=LPH40_04320 NZ_CP087685.1 Protein Homology CDS 1072820 1073668 . - 0 ID=cds-WP_038271244.1;Parent=gene-LPH40_RS04320;Dbxref=Genbank:WP_038271244.1;Name=WP_038271244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852754.1;locus_tag=LPH40_RS04320;product=response regulator;protein_id=WP_038271244.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1073683 1074621 . - . ID=gene-LPH40_RS04325;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=LPH40_RS04325;old_locus_tag=LPH40_04325 NZ_CP087685.1 Protein Homology CDS 1073683 1074621 . - 0 ID=cds-WP_038271243.1;Parent=gene-LPH40_RS04325;Dbxref=Genbank:WP_038271243.1;Name=WP_038271243.1;Ontology_term=GO:0000910;gbkey=CDS;gene=ftsX;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484495.1;locus_tag=LPH40_RS04325;product=permease-like cell division protein FtsX;protein_id=WP_038271243.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1074618 1075304 . - . ID=gene-LPH40_RS04330;Name=ftsE;gbkey=Gene;gene=ftsE;gene_biotype=protein_coding;locus_tag=LPH40_RS04330;old_locus_tag=LPH40_04330 NZ_CP087685.1 Protein Homology CDS 1074618 1075304 . - 0 ID=cds-WP_038271242.1;Parent=gene-LPH40_RS04330;Dbxref=Genbank:WP_038271242.1;Name=WP_038271242.1;Ontology_term=GO:0000910,GO:0006810,GO:0005524;gbkey=CDS;gene=ftsE;go_function=ATP binding|0005524||IEA;go_process=cytokinesis|0000910||IEA,transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484499.1;locus_tag=LPH40_RS04330;product=cell division ATP-binding protein FtsE;protein_id=WP_038271242.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1075378 1077030 . - . ID=gene-LPH40_RS04335;Name=rhlB;gbkey=Gene;gene=rhlB;gene_biotype=protein_coding;locus_tag=LPH40_RS04335;old_locus_tag=LPH40_04335 NZ_CP087685.1 Protein Homology CDS 1075378 1077030 . - 0 ID=cds-WP_038271241.1;Parent=gene-LPH40_RS04335;Dbxref=Genbank:WP_038271241.1;Name=WP_038271241.1;gbkey=CDS;gene=rhlB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031337155.1;locus_tag=LPH40_RS04335;product=ATP-dependent RNA helicase RhlB;protein_id=WP_038271241.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1077228 1077569 . + . ID=gene-LPH40_RS04340;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=LPH40_RS04340;old_locus_tag=LPH40_04340 NZ_CP087685.1 Protein Homology CDS 1077228 1077569 . + 0 ID=cds-WP_038271240.1;Parent=gene-LPH40_RS04340;Dbxref=Genbank:WP_038271240.1;Name=WP_038271240.1;Ontology_term=GO:0015036,GO:0005737;gbkey=CDS;gene=trxA;go_component=cytoplasm|0005737||IEA;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852709.1;locus_tag=LPH40_RS04340;product=thioredoxin;protein_id=WP_038271240.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1077777 1079471 . + . ID=gene-LPH40_RS04345;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=LPH40_RS04345;old_locus_tag=LPH40_04345 NZ_CP087685.1 Protein Homology CDS 1077777 1079471 . + 0 ID=cds-WP_038271239.1;Parent=gene-LPH40_RS04345;Dbxref=Genbank:WP_038271239.1;Name=WP_038271239.1;Ontology_term=GO:0006353,GO:0004386,GO:0008186;gbkey=CDS;gene=rho;go_function=helicase activity|0004386||IEA,ATP-dependent activity%2C acting on RNA|0008186||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008266970.1;locus_tag=LPH40_RS04345;product=transcription termination factor Rho;protein_id=WP_038271239.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1080381 1082612 . - . ID=gene-LPH40_RS04350;Name=LPH40_RS04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04350;old_locus_tag=LPH40_04350 NZ_CP087685.1 Protein Homology CDS 1080381 1082612 . - 0 ID=cds-WP_038271238.1;Parent=gene-LPH40_RS04350;Dbxref=Genbank:WP_038271238.1;Name=WP_038271238.1;Ontology_term=GO:0006099,GO:0004450;gbkey=CDS;go_function=isocitrate dehydrogenase (NADP+) activity|0004450||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157024.1;locus_tag=LPH40_RS04350;product=NADP-dependent isocitrate dehydrogenase;protein_id=WP_038271238.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1082635 1082766 . - . ID=gene-LPH40_RS11975;Name=LPH40_RS11975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11975 NZ_CP087685.1 GeneMarkS-2+ CDS 1082635 1082766 . - 0 ID=cds-WP_268980370.1;Parent=gene-LPH40_RS11975;Dbxref=Genbank:WP_268980370.1;Name=WP_268980370.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11975;product=hypothetical protein;protein_id=WP_268980370.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1084603 1085277 . + . ID=gene-LPH40_RS04355;Name=cas5c;gbkey=Gene;gene=cas5c;gene_biotype=protein_coding;locus_tag=LPH40_RS04355;old_locus_tag=LPH40_04355 NZ_CP087685.1 Protein Homology CDS 1084603 1085277 . + 0 ID=cds-WP_038271237.1;Parent=gene-LPH40_RS04355;Dbxref=Genbank:WP_038271237.1;Name=WP_038271237.1;Ontology_term=GO:0043571,GO:0003674,GO:0005575;gbkey=CDS;gene=cas5c;go_component=cellular_component|0005575||IEA;go_function=molecular_function|0003674||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003465423.1;locus_tag=LPH40_RS04355;product=type I-C CRISPR-associated protein Cas5c;protein_id=WP_038271237.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1085274 1087085 . + . ID=gene-LPH40_RS04360;Name=cas8c;gbkey=Gene;gene=cas8c;gene_biotype=protein_coding;locus_tag=LPH40_RS04360;old_locus_tag=LPH40_04360 NZ_CP087685.1 Protein Homology CDS 1085274 1087085 . + 0 ID=cds-WP_038271236.1;Parent=gene-LPH40_RS04360;Dbxref=Genbank:WP_038271236.1;Name=WP_038271236.1;Ontology_term=GO:0043571,GO:0003674,GO:0005575;gbkey=CDS;gene=cas8c;go_component=cellular_component|0005575||IEA;go_function=molecular_function|0003674||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017119023.1;locus_tag=LPH40_RS04360;product=type I-C CRISPR-associated protein Cas8c/Csd1;protein_id=WP_038271236.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1087082 1087948 . + . ID=gene-LPH40_RS04365;Name=cas7c;gbkey=Gene;gene=cas7c;gene_biotype=protein_coding;locus_tag=LPH40_RS04365;old_locus_tag=LPH40_04365 NZ_CP087685.1 Protein Homology CDS 1087082 1087948 . + 0 ID=cds-WP_038271235.1;Parent=gene-LPH40_RS04365;Dbxref=Genbank:WP_038271235.1;Name=WP_038271235.1;Ontology_term=GO:0043571,GO:0003674;gbkey=CDS;gene=cas7c;go_function=molecular_function|0003674||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372412.1;locus_tag=LPH40_RS04365;product=type I-C CRISPR-associated protein Cas7/Csd2;protein_id=WP_038271235.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1091059 1092513 . - . ID=gene-LPH40_RS04370;Name=LPH40_RS04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04370;old_locus_tag=LPH40_04370 NZ_CP087685.1 Protein Homology CDS 1091059 1092513 . - 0 ID=cds-WP_038271234.1;Parent=gene-LPH40_RS04370;Dbxref=Genbank:WP_038271234.1;Name=WP_038271234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084798.1;locus_tag=LPH40_RS04370;product=S41 family peptidase;protein_id=WP_038271234.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1092664 1093974 . - . ID=gene-LPH40_RS04375;Name=LPH40_RS04375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04375;old_locus_tag=LPH40_04375 NZ_CP087685.1 Protein Homology CDS 1092664 1093974 . - 0 ID=cds-WP_038271283.1;Parent=gene-LPH40_RS04375;Dbxref=Genbank:WP_038271283.1;Name=WP_038271283.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084799.1;locus_tag=LPH40_RS04375;product=murein hydrolase activator EnvC;protein_id=WP_038271283.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1094172 1095893 . + . ID=gene-LPH40_RS04380;Name=LPH40_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04380;old_locus_tag=LPH40_04380 NZ_CP087685.1 Protein Homology CDS 1094172 1095893 . + 0 ID=cds-WP_038271233.1;Parent=gene-LPH40_RS04380;Dbxref=Genbank:WP_038271233.1;Name=WP_038271233.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098351.1;locus_tag=LPH40_RS04380;product=M28 family peptidase;protein_id=WP_038271233.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1097184 1098302 . + . ID=gene-LPH40_RS04385;Name=LPH40_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04385;old_locus_tag=LPH40_04385 NZ_CP087685.1 Protein Homology CDS 1097184 1098302 . + 0 ID=cds-WP_081755436.1;Parent=gene-LPH40_RS04385;Dbxref=Genbank:WP_081755436.1;Name=WP_081755436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853012.1;locus_tag=LPH40_RS04385;product=glycoside hydrolase family 5 protein;protein_id=WP_081755436.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1099219 1099455 . + . ID=gene-LPH40_RS04390;Name=LPH40_RS04390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04390;old_locus_tag=LPH40_04390 NZ_CP087685.1 GeneMarkS-2+ CDS 1099219 1099455 . + 0 ID=cds-WP_230428251.1;Parent=gene-LPH40_RS04390;Dbxref=Genbank:WP_230428251.1;Name=WP_230428251.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04390;product=hypothetical protein;protein_id=WP_230428251.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1099572 1099714 . + . ID=gene-LPH40_RS04395;Name=LPH40_RS04395;end_range=1099714,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS04395;old_locus_tag=LPH40_04395;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1099572 1099714 . + 0 ID=cds-LPH40_RS04395;Parent=gene-LPH40_RS04395;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1099714,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LPH40_RS04395;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1099846 1100034 . + . ID=gene-LPH40_RS04400;Name=LPH40_RS04400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04400;old_locus_tag=LPH40_04400 NZ_CP087685.1 GeneMarkS-2+ CDS 1099846 1100034 . + 0 ID=cds-WP_152536615.1;Parent=gene-LPH40_RS04400;Dbxref=Genbank:WP_152536615.1;Name=WP_152536615.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04400;product=hypothetical protein;protein_id=WP_152536615.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1100564 1102048 . - . ID=gene-LPH40_RS04405;Name=LPH40_RS04405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04405;old_locus_tag=LPH40_04405 NZ_CP087685.1 Protein Homology CDS 1100564 1102048 . - 0 ID=cds-WP_038271230.1;Parent=gene-LPH40_RS04405;Dbxref=Genbank:WP_038271230.1;Name=WP_038271230.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098354.1;locus_tag=LPH40_RS04405;product=FAD-dependent oxidoreductase;protein_id=WP_038271230.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1102187 1106656 . - . ID=gene-LPH40_RS04410;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=LPH40_RS04410;old_locus_tag=LPH40_04410 NZ_CP087685.1 Protein Homology CDS 1102187 1106656 . - 0 ID=cds-WP_038271229.1;Parent=gene-LPH40_RS04410;Dbxref=Genbank:WP_038271229.1;Name=WP_038271229.1;Ontology_term=GO:0006537,GO:0006807,GO:0003824,GO:0015930,GO:0016491;gbkey=CDS;gene=gltB;go_function=catalytic activity|0003824||IEA,glutamate synthase activity|0015930||IEA,oxidoreductase activity|0016491||IEA;go_process=glutamate biosynthetic process|0006537||IEA,nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087485.1;locus_tag=LPH40_RS04410;product=glutamate synthase large subunit;protein_id=WP_038271229.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1107278 1107421 . - . ID=gene-LPH40_RS04415;Name=LPH40_RS04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04415;old_locus_tag=LPH40_04415 NZ_CP087685.1 GeneMarkS-2+ CDS 1107278 1107421 . - 0 ID=cds-WP_160165173.1;Parent=gene-LPH40_RS04415;Dbxref=Genbank:WP_160165173.1;Name=WP_160165173.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04415;product=hypothetical protein;protein_id=WP_160165173.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1107592 1108446 . + . ID=gene-LPH40_RS04420;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=LPH40_RS04420;old_locus_tag=LPH40_04420 NZ_CP087685.1 Protein Homology CDS 1107592 1108446 . + 0 ID=cds-WP_038271228.1;Parent=gene-LPH40_RS04420;Dbxref=Genbank:WP_038271228.1;Name=WP_038271228.1;Ontology_term=GO:0006561,GO:0004735;gbkey=CDS;gene=proC;go_function=pyrroline-5-carboxylate reductase activity|0004735||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087478.1;locus_tag=LPH40_RS04420;product=pyrroline-5-carboxylate reductase;protein_id=WP_038271228.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1109572 1112178 . + . ID=gene-LPH40_RS04425;Name=LPH40_RS04425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04425;old_locus_tag=LPH40_04425 NZ_CP087685.1 Protein Homology CDS 1109572 1112178 . + 0 ID=cds-WP_114867192.1;Parent=gene-LPH40_RS04425;Dbxref=Genbank:WP_114867192.1;Name=WP_114867192.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164668.1;locus_tag=LPH40_RS04425;product=TonB-dependent receptor;protein_id=WP_114867192.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1112272 1114119 . + . ID=gene-LPH40_RS04430;Name=LPH40_RS04430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04430;old_locus_tag=LPH40_04430 NZ_CP087685.1 Protein Homology CDS 1112272 1114119 . + 0 ID=cds-WP_038271227.1;Parent=gene-LPH40_RS04430;Dbxref=Genbank:WP_038271227.1;Name=WP_038271227.1;Ontology_term=GO:0005975,GO:0004560;gbkey=CDS;go_function=alpha-L-fucosidase activity|0004560||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338135.1;locus_tag=LPH40_RS04430;product=alpha-L-fucosidase;protein_id=WP_038271227.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1115033 1115385 . + . ID=gene-LPH40_RS04435;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=LPH40_RS04435;old_locus_tag=LPH40_04435 NZ_CP087685.1 cmsearch tmRNA 1115033 1115385 . + . ID=rna-LPH40_RS04435;Parent=gene-LPH40_RS04435;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS04435;product=transfer-messenger RNA NZ_CP087685.1 cmsearch exon 1115033 1115385 . + . ID=exon-LPH40_RS04435-1;Parent=rna-LPH40_RS04435;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS04435;product=transfer-messenger RNA NZ_CP087685.1 RefSeq gene 1115758 1116291 . - . ID=gene-LPH40_RS04440;Name=LPH40_RS04440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04440;old_locus_tag=LPH40_04440 NZ_CP087685.1 GeneMarkS-2+ CDS 1115758 1116291 . - 0 ID=cds-WP_038271225.1;Parent=gene-LPH40_RS04440;Dbxref=Genbank:WP_038271225.1;Name=WP_038271225.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04440;product=hypothetical protein;protein_id=WP_038271225.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1116288 1116602 . - . ID=gene-LPH40_RS04445;Name=LPH40_RS04445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04445;old_locus_tag=LPH40_04445 NZ_CP087685.1 GeneMarkS-2+ CDS 1116288 1116602 . - 0 ID=cds-WP_038271281.1;Parent=gene-LPH40_RS04445;Dbxref=Genbank:WP_038271281.1;Name=WP_038271281.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04445;product=hypothetical protein;protein_id=WP_038271281.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1116772 1117158 . - . ID=gene-LPH40_RS04450;Name=LPH40_RS04450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04450;old_locus_tag=LPH40_04450 NZ_CP087685.1 Protein Homology CDS 1116772 1117158 . - 0 ID=cds-WP_038271280.1;Parent=gene-LPH40_RS04450;Dbxref=Genbank:WP_038271280.1;Name=WP_038271280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086150.1;locus_tag=LPH40_RS04450;product=DUF596 domain-containing protein;protein_id=WP_038271280.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1117170 1117523 . - . ID=gene-LPH40_RS04455;Name=LPH40_RS04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04455;old_locus_tag=LPH40_04455 NZ_CP087685.1 Protein Homology CDS 1117170 1117523 . - 0 ID=cds-WP_051482311.1;Parent=gene-LPH40_RS04455;Dbxref=Genbank:WP_051482311.1;Name=WP_051482311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090789.1;locus_tag=LPH40_RS04455;product=DUF769 domain-containing protein;protein_id=WP_051482311.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1117603 1117979 . - . ID=gene-LPH40_RS04460;Name=LPH40_RS04460;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS04460;old_locus_tag=LPH40_04460;pseudo=true NZ_CP087685.1 Protein Homology CDS 1117603 1117979 . - 0 ID=cds-LPH40_RS04460;Parent=gene-LPH40_RS04460;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382790.1;locus_tag=LPH40_RS04460;product=DUF596 domain-containing protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1117991 1118320 . - . ID=gene-LPH40_RS04465;Name=LPH40_RS04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04465;old_locus_tag=LPH40_04465 NZ_CP087685.1 Protein Homology CDS 1117991 1118320 . - 0 ID=cds-WP_038271224.1;Parent=gene-LPH40_RS04465;Dbxref=Genbank:WP_038271224.1;Name=WP_038271224.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017408.2;locus_tag=LPH40_RS04465;product=DUF769 domain-containing protein;protein_id=WP_038271224.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1118385 1118807 . - . ID=gene-LPH40_RS04470;Name=LPH40_RS04470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04470;old_locus_tag=LPH40_04470 NZ_CP087685.1 GeneMarkS-2+ CDS 1118385 1118807 . - 0 ID=cds-WP_038271223.1;Parent=gene-LPH40_RS04470;Dbxref=Genbank:WP_038271223.1;Name=WP_038271223.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04470;product=hypothetical protein;protein_id=WP_038271223.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1118804 1119979 . - . ID=gene-LPH40_RS04475;Name=LPH40_RS04475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04475;old_locus_tag=LPH40_04475 NZ_CP087685.1 Protein Homology CDS 1118804 1119979 . - 0 ID=cds-WP_205395219.1;Parent=gene-LPH40_RS04475;Dbxref=Genbank:WP_205395219.1;Name=WP_205395219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382788.1;locus_tag=LPH40_RS04475;product=DNA/RNA non-specific endonuclease;protein_id=WP_205395219.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1120414 1120803 . - . ID=gene-LPH40_RS04480;Name=LPH40_RS04480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04480;old_locus_tag=LPH40_04480 NZ_CP087685.1 Protein Homology CDS 1120414 1120803 . - 0 ID=cds-WP_038273210.1;Parent=gene-LPH40_RS04480;Dbxref=Genbank:WP_038273210.1;Name=WP_038273210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH40_RS04480;product=DUF596 domain-containing protein;protein_id=WP_038273210.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1120815 1121111 . - . ID=gene-LPH40_RS04485;Name=LPH40_RS04485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04485;old_locus_tag=LPH40_04485 NZ_CP087685.1 Protein Homology CDS 1120815 1121111 . - 0 ID=cds-WP_268746658.1;Parent=gene-LPH40_RS04485;Dbxref=Genbank:WP_268746658.1;Name=WP_268746658.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017408.2;locus_tag=LPH40_RS04485;product=DUF769 domain-containing protein;protein_id=WP_268746658.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1121313 1121711 . - . ID=gene-LPH40_RS04490;Name=LPH40_RS04490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04490;old_locus_tag=LPH40_04490 NZ_CP087685.1 Protein Homology CDS 1121313 1121711 . - 0 ID=cds-WP_038273203.1;Parent=gene-LPH40_RS04490;Dbxref=Genbank:WP_038273203.1;Name=WP_038273203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089371.1;locus_tag=LPH40_RS04490;product=DUF596 domain-containing protein;protein_id=WP_038273203.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1121723 1122856 . - . ID=gene-LPH40_RS04495;Name=LPH40_RS04495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04495;old_locus_tag=LPH40_04495 NZ_CP087685.1 Protein Homology CDS 1121723 1122856 . - 0 ID=cds-WP_114867194.1;Parent=gene-LPH40_RS04495;Dbxref=Genbank:WP_114867194.1;Name=WP_114867194.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382788.1;locus_tag=LPH40_RS04495;product=DUF769 domain-containing protein;protein_id=WP_114867194.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1123010 1123567 . - . ID=gene-LPH40_RS04500;Name=LPH40_RS04500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04500;old_locus_tag=LPH40_04500 NZ_CP087685.1 GeneMarkS-2+ CDS 1123010 1123567 . - 0 ID=cds-WP_038273296.1;Parent=gene-LPH40_RS04500;Dbxref=Genbank:WP_038273296.1;Name=WP_038273296.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04500;product=hypothetical protein;protein_id=WP_038273296.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1123564 1133241 . - . ID=gene-LPH40_RS04505;Name=LPH40_RS04505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04505;old_locus_tag=LPH40_04505 NZ_CP087685.1 Protein Homology CDS 1123564 1133241 . - 0 ID=cds-WP_171898066.1;Parent=gene-LPH40_RS04505;Dbxref=Genbank:WP_171898066.1;Name=WP_171898066.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024728.2;locus_tag=LPH40_RS04505;product=hemagglutinin repeat-containing protein;protein_id=WP_171898066.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1133201 1134571 . - . ID=gene-LPH40_RS04510;Name=LPH40_RS04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04510;old_locus_tag=LPH40_04510 NZ_CP087685.1 Protein Homology CDS 1133201 1134571 . - 0 ID=cds-WP_114867153.1-3;Parent=gene-LPH40_RS04510;Dbxref=Genbank:WP_114867153.1;Name=WP_114867153.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017658.2;locus_tag=LPH40_RS04510;product=filamentous hemagglutinin N-terminal domain-containing protein;protein_id=WP_114867153.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1135093 1135419 . + . ID=gene-LPH40_RS04515;Name=LPH40_RS04515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04515;old_locus_tag=LPH40_04515 NZ_CP087685.1 GeneMarkS-2+ CDS 1135093 1135419 . + 0 ID=cds-WP_201745751.1;Parent=gene-LPH40_RS04515;Dbxref=Genbank:WP_201745751.1;Name=WP_201745751.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04515;product=hypothetical protein;protein_id=WP_201745751.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1135445 1136365 . - . ID=gene-LPH40_RS04520;Name=LPH40_RS04520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04520;old_locus_tag=LPH40_04520 NZ_CP087685.1 GeneMarkS-2+ CDS 1135445 1136365 . - 0 ID=cds-WP_160165228.1;Parent=gene-LPH40_RS04520;Dbxref=Genbank:WP_160165228.1;Name=WP_160165228.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04520;product=hypothetical protein;protein_id=WP_160165228.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1136251 1136709 . - . ID=gene-LPH40_RS04525;Name=LPH40_RS04525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04525;old_locus_tag=LPH40_04525 NZ_CP087685.1 GeneMarkS-2+ CDS 1136251 1136709 . - 0 ID=cds-WP_152536667.1;Parent=gene-LPH40_RS04525;Dbxref=Genbank:WP_152536667.1;Name=WP_152536667.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04525;product=hypothetical protein;protein_id=WP_152536667.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1136772 1136912 . - . ID=gene-LPH40_RS04530;Name=LPH40_RS04530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04530;old_locus_tag=LPH40_04530 NZ_CP087685.1 GeneMarkS-2+ CDS 1136772 1136912 . - 0 ID=cds-WP_162814110.1;Parent=gene-LPH40_RS04530;Dbxref=Genbank:WP_162814110.1;Name=WP_162814110.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04530;product=hypothetical protein;protein_id=WP_162814110.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1137222 1138169 . - . ID=gene-LPH40_RS04535;Name=LPH40_RS04535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04535;old_locus_tag=LPH40_04535 NZ_CP087685.1 Protein Homology CDS 1137222 1138169 . - 0 ID=cds-WP_038272973.1;Parent=gene-LPH40_RS04535;Dbxref=Genbank:WP_038272973.1;Name=WP_038272973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087430.1;locus_tag=LPH40_RS04535;product=COG2958 family protein;protein_id=WP_038272973.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1138181 1138405 . - . ID=gene-LPH40_RS04540;Name=LPH40_RS04540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04540;old_locus_tag=LPH40_04540 NZ_CP087685.1 GeneMarkS-2+ CDS 1138181 1138405 . - 0 ID=cds-WP_152536668.1;Parent=gene-LPH40_RS04540;Dbxref=Genbank:WP_152536668.1;Name=WP_152536668.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04540;product=hypothetical protein;protein_id=WP_152536668.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1139041 1139412 . - . ID=gene-LPH40_RS04545;Name=LPH40_RS04545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04545;old_locus_tag=LPH40_04545 NZ_CP087685.1 GeneMarkS-2+ CDS 1139041 1139412 . - 0 ID=cds-WP_200866219.1;Parent=gene-LPH40_RS04545;Dbxref=Genbank:WP_200866219.1;Name=WP_200866219.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04545;product=hypothetical protein;protein_id=WP_200866219.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1139457 1142480 . - . ID=gene-LPH40_RS04550;Name=LPH40_RS04550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04550;old_locus_tag=LPH40_04550 NZ_CP087685.1 Protein Homology CDS 1139457 1142480 . - 0 ID=cds-WP_038272980.1;Parent=gene-LPH40_RS04550;Dbxref=Genbank:WP_038272980.1;Name=WP_038272980.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085623.1;locus_tag=LPH40_RS04550;product=type I restriction endonuclease subunit R;protein_id=WP_038272980.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1142477 1143649 . - . ID=gene-LPH40_RS04555;Name=LPH40_RS04555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04555;old_locus_tag=LPH40_04555 NZ_CP087685.1 Protein Homology CDS 1142477 1143649 . - 0 ID=cds-WP_038272982.1;Parent=gene-LPH40_RS04555;Dbxref=Genbank:WP_038272982.1;Name=WP_038272982.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895140.1;locus_tag=LPH40_RS04555;product=restriction endonuclease subunit S;protein_id=WP_038272982.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1143652 1143897 . - . ID=gene-LPH40_RS04560;Name=LPH40_RS04560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04560;old_locus_tag=LPH40_04560 NZ_CP087685.1 GeneMarkS-2+ CDS 1143652 1143897 . - 0 ID=cds-WP_038272984.1;Parent=gene-LPH40_RS04560;Dbxref=Genbank:WP_038272984.1;Name=WP_038272984.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04560;product=hypothetical protein;protein_id=WP_038272984.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1143894 1145474 . - . ID=gene-LPH40_RS04565;Name=LPH40_RS04565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04565;old_locus_tag=LPH40_04565 NZ_CP087685.1 Protein Homology CDS 1143894 1145474 . - 0 ID=cds-WP_038272985.1;Parent=gene-LPH40_RS04565;Dbxref=Genbank:WP_038272985.1;Name=WP_038272985.1;Ontology_term=GO:0006306,GO:0009307,GO:0009007,GO:0015666;gbkey=CDS;go_function=site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA,restriction endodeoxyribonuclease activity|0015666||IEA;go_process=DNA methylation|0006306||IEA,DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852131.1;locus_tag=LPH40_RS04565;product=type I restriction-modification system subunit M;protein_id=WP_038272985.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1145584 1145772 . - . ID=gene-LPH40_RS04570;Name=LPH40_RS04570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04570;old_locus_tag=LPH40_04570 NZ_CP087685.1 GeneMarkS-2+ CDS 1145584 1145772 . - 0 ID=cds-WP_038272987.1;Parent=gene-LPH40_RS04570;Dbxref=Genbank:WP_038272987.1;Name=WP_038272987.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04570;product=hypothetical protein;protein_id=WP_038272987.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1145867 1146064 . - . ID=gene-LPH40_RS04575;Name=LPH40_RS04575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04575;old_locus_tag=LPH40_04575 NZ_CP087685.1 GeneMarkS-2+ CDS 1145867 1146064 . - 0 ID=cds-WP_038272989.1;Parent=gene-LPH40_RS04575;Dbxref=Genbank:WP_038272989.1;Name=WP_038272989.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04575;product=hypothetical protein;protein_id=WP_038272989.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1146073 1146528 . - . ID=gene-LPH40_RS04580;Name=LPH40_RS04580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04580;old_locus_tag=LPH40_04580 NZ_CP087685.1 GeneMarkS-2+ CDS 1146073 1146528 . - 0 ID=cds-WP_038272991.1;Parent=gene-LPH40_RS04580;Dbxref=Genbank:WP_038272991.1;Name=WP_038272991.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04580;product=hypothetical protein;protein_id=WP_038272991.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1146706 1146912 . - . ID=gene-LPH40_RS04585;Name=LPH40_RS04585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04585;old_locus_tag=LPH40_04585 NZ_CP087685.1 GeneMarkS-2+ CDS 1146706 1146912 . - 0 ID=cds-WP_114867196.1;Parent=gene-LPH40_RS04585;Dbxref=Genbank:WP_114867196.1;Name=WP_114867196.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04585;product=hypothetical protein;protein_id=WP_114867196.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1146909 1147115 . - . ID=gene-LPH40_RS04590;Name=LPH40_RS04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04590;old_locus_tag=LPH40_04590 NZ_CP087685.1 GeneMarkS-2+ CDS 1146909 1147115 . - 0 ID=cds-WP_162814111.1;Parent=gene-LPH40_RS04590;Dbxref=Genbank:WP_162814111.1;Name=WP_162814111.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04590;product=hypothetical protein;protein_id=WP_162814111.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1147150 1147338 . - . ID=gene-LPH40_RS04595;Name=LPH40_RS04595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04595;old_locus_tag=LPH40_04595 NZ_CP087685.1 GeneMarkS-2+ CDS 1147150 1147338 . - 0 ID=cds-WP_114867197.1;Parent=gene-LPH40_RS04595;Dbxref=Genbank:WP_114867197.1;Name=WP_114867197.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04595;product=hypothetical protein;protein_id=WP_114867197.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1147565 1148188 . + . ID=gene-LPH40_RS04600;Name=LPH40_RS04600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS04600;old_locus_tag=LPH40_04600;pseudo=true NZ_CP087685.1 Protein Homology CDS 1147565 1148188 . + 0 ID=cds-LPH40_RS04600;Parent=gene-LPH40_RS04600;Note=internal stop;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021498.2;locus_tag=LPH40_RS04600;product=DUF2220 domain-containing protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1148595 1148774 . - . ID=gene-LPH40_RS04605;Name=LPH40_RS04605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04605;old_locus_tag=LPH40_04605 NZ_CP087685.1 GeneMarkS-2+ CDS 1148595 1148774 . - 0 ID=cds-WP_038273245.1;Parent=gene-LPH40_RS04605;Dbxref=Genbank:WP_038273245.1;Name=WP_038273245.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04605;product=hypothetical protein;protein_id=WP_038273245.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1148853 1149170 . - . ID=gene-LPH40_RS04610;Name=LPH40_RS04610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04610;old_locus_tag=LPH40_04610 NZ_CP087685.1 GeneMarkS-2+ CDS 1148853 1149170 . - 0 ID=cds-WP_160199317.1;Parent=gene-LPH40_RS04610;Dbxref=Genbank:WP_160199317.1;Name=WP_160199317.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04610;product=hypothetical protein;protein_id=WP_160199317.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1149463 1149729 . + . ID=gene-LPH40_RS04615;Name=LPH40_RS04615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04615;old_locus_tag=LPH40_04615 NZ_CP087685.1 GeneMarkS-2+ CDS 1149463 1149729 . + 0 ID=cds-WP_152536660.1;Parent=gene-LPH40_RS04615;Dbxref=Genbank:WP_152536660.1;Name=WP_152536660.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04615;product=hypothetical protein;protein_id=WP_152536660.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1149726 1149944 . + . ID=gene-LPH40_RS04620;Name=LPH40_RS04620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04620;old_locus_tag=LPH40_04620 NZ_CP087685.1 GeneMarkS-2+ CDS 1149726 1149944 . + 0 ID=cds-WP_038272773.1;Parent=gene-LPH40_RS04620;Dbxref=Genbank:WP_038272773.1;Name=WP_038272773.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04620;product=hypothetical protein;protein_id=WP_038272773.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1149962 1150774 . - . ID=gene-LPH40_RS04625;Name=LPH40_RS04625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04625;old_locus_tag=LPH40_04625 NZ_CP087685.1 Protein Homology CDS 1149962 1150774 . - 0 ID=cds-WP_038272775.1;Parent=gene-LPH40_RS04625;Dbxref=Genbank:WP_038272775.1;Name=WP_038272775.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014899.2;locus_tag=LPH40_RS04625;product=class III extradiol ring-cleavage dioxygenase;protein_id=WP_038272775.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1150940 1151089 . - . ID=gene-LPH40_RS04630;Name=LPH40_RS04630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04630;old_locus_tag=LPH40_04630 NZ_CP087685.1 Protein Homology CDS 1150940 1151089 . - 0 ID=cds-WP_230428254.1;Parent=gene-LPH40_RS04630;Dbxref=Genbank:WP_230428254.1;Name=WP_230428254.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012464.2;locus_tag=LPH40_RS04630;product=hypothetical protein;protein_id=WP_230428254.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1151086 1151223 . - . ID=gene-LPH40_RS04635;Name=LPH40_RS04635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04635;old_locus_tag=LPH40_04635 NZ_CP087685.1 GeneMarkS-2+ CDS 1151086 1151223 . - 0 ID=cds-WP_230428255.1;Parent=gene-LPH40_RS04635;Dbxref=Genbank:WP_230428255.1;Name=WP_230428255.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04635;product=hypothetical protein;protein_id=WP_230428255.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1151231 1151539 . - . ID=gene-LPH40_RS04640;Name=LPH40_RS04640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04640;old_locus_tag=LPH40_04640 NZ_CP087685.1 GeneMarkS-2+ CDS 1151231 1151539 . - 0 ID=cds-WP_038272777.1;Parent=gene-LPH40_RS04640;Dbxref=Genbank:WP_038272777.1;Name=WP_038272777.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04640;product=hypothetical protein;protein_id=WP_038272777.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1151733 1152218 . + . ID=gene-LPH40_RS04645;Name=LPH40_RS04645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04645;old_locus_tag=LPH40_04645 NZ_CP087685.1 GeneMarkS-2+ CDS 1151733 1152218 . + 0 ID=cds-WP_038272779.1;Parent=gene-LPH40_RS04645;Dbxref=Genbank:WP_038272779.1;Name=WP_038272779.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04645;product=hypothetical protein;protein_id=WP_038272779.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1152378 1155368 . - . ID=gene-LPH40_RS04650;Name=LPH40_RS04650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04650;old_locus_tag=LPH40_04650 NZ_CP087685.1 Protein Homology CDS 1152378 1155368 . - 0 ID=cds-WP_038272782.1;Parent=gene-LPH40_RS04650;Dbxref=Genbank:WP_038272782.1;Name=WP_038272782.1;Ontology_term=GO:0009307,GO:0009035,GO:0019812;gbkey=CDS;go_component=type I site-specific deoxyribonuclease complex|0019812||IEA;go_function=type I site-specific deoxyribonuclease activity|0009035||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161163.1;locus_tag=LPH40_RS04650;product=HsdR family type I site-specific deoxyribonuclease;protein_id=WP_038272782.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1155371 1156525 . - . ID=gene-LPH40_RS04655;Name=LPH40_RS04655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04655;old_locus_tag=LPH40_04655 NZ_CP087685.1 Protein Homology CDS 1155371 1156525 . - 0 ID=cds-WP_081755486.1;Parent=gene-LPH40_RS04655;Dbxref=Genbank:WP_081755486.1;Name=WP_081755486.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: protein motif:HMM:NF013579.2;locus_tag=LPH40_RS04655;product=restriction endonuclease subunit S;protein_id=WP_081755486.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1156518 1158044 . - . ID=gene-LPH40_RS04660;Name=LPH40_RS04660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04660;old_locus_tag=LPH40_04660 NZ_CP087685.1 Protein Homology CDS 1156518 1158044 . - 0 ID=cds-WP_038272784.1;Parent=gene-LPH40_RS04660;Dbxref=Genbank:WP_038272784.1;Name=WP_038272784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161165.1;locus_tag=LPH40_RS04660;product=class I SAM-dependent DNA methyltransferase;protein_id=WP_038272784.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1158041 1159543 . - . ID=gene-LPH40_RS04665;Name=LPH40_RS04665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04665;old_locus_tag=LPH40_04665 NZ_CP087685.1 Protein Homology CDS 1158041 1159543 . - 0 ID=cds-WP_038272787.1;Parent=gene-LPH40_RS04665;Dbxref=Genbank:WP_038272787.1;Name=WP_038272787.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161167.1;locus_tag=LPH40_RS04665;product=class I SAM-dependent DNA methyltransferase;protein_id=WP_038272787.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1159612 1159761 . - . ID=gene-LPH40_RS04670;Name=LPH40_RS04670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04670;old_locus_tag=LPH40_04670 NZ_CP087685.1 GeneMarkS-2+ CDS 1159612 1159761 . - 0 ID=cds-WP_200866214.1;Parent=gene-LPH40_RS04670;Dbxref=Genbank:WP_200866214.1;Name=WP_200866214.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04670;product=hypothetical protein;protein_id=WP_200866214.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1159845 1160000 . + . ID=gene-LPH40_RS04675;Name=LPH40_RS04675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04675;old_locus_tag=LPH40_04675 NZ_CP087685.1 GeneMarkS-2+ CDS 1159845 1160000 . + 0 ID=cds-WP_162814078.1;Parent=gene-LPH40_RS04675;Dbxref=Genbank:WP_162814078.1;Name=WP_162814078.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04675;product=hypothetical protein;protein_id=WP_162814078.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1160142 1160384 . + . ID=gene-LPH40_RS04680;Name=LPH40_RS04680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04680;old_locus_tag=LPH40_04680 NZ_CP087685.1 GeneMarkS-2+ CDS 1160142 1160384 . + 0 ID=cds-WP_160165223.1;Parent=gene-LPH40_RS04680;Dbxref=Genbank:WP_160165223.1;Name=WP_160165223.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04680;product=hypothetical protein;protein_id=WP_160165223.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1160387 1161277 . + . ID=gene-LPH40_RS04685;Name=LPH40_RS04685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04685;old_locus_tag=LPH40_04685 NZ_CP087685.1 Protein Homology CDS 1160387 1161277 . + 0 ID=cds-WP_038272792.1;Parent=gene-LPH40_RS04685;Dbxref=Genbank:WP_038272792.1;Name=WP_038272792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085602.1;locus_tag=LPH40_RS04685;product=hypothetical protein;protein_id=WP_038272792.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1161417 1162287 . + . ID=gene-LPH40_RS04690;Name=LPH40_RS04690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS04690;old_locus_tag=LPH40_04690;pseudo=true NZ_CP087685.1 Protein Homology CDS 1161417 1162287 . + 0 ID=cds-LPH40_RS04690;Parent=gene-LPH40_RS04690;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085602.1;locus_tag=LPH40_RS04690;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1162451 1162915 . + . ID=gene-LPH40_RS04695;Name=LPH40_RS04695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04695;old_locus_tag=LPH40_04695 NZ_CP087685.1 Protein Homology CDS 1162451 1162915 . + 0 ID=cds-WP_038272801.1;Parent=gene-LPH40_RS04695;Dbxref=Genbank:WP_038272801.1;Name=WP_038272801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895168.1;locus_tag=LPH40_RS04695;product=hypothetical protein;protein_id=WP_038272801.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1163052 1163303 . + . ID=gene-LPH40_RS04700;Name=LPH40_RS04700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04700;old_locus_tag=LPH40_04700 NZ_CP087685.1 GeneMarkS-2+ CDS 1163052 1163303 . + 0 ID=cds-WP_230430685.1;Parent=gene-LPH40_RS04700;Dbxref=Genbank:WP_230430685.1;Name=WP_230430685.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04700;product=hypothetical protein;protein_id=WP_230430685.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1163499 1164077 . + . ID=gene-LPH40_RS04705;Name=LPH40_RS04705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04705;old_locus_tag=LPH40_04705 NZ_CP087685.1 Protein Homology CDS 1163499 1164077 . + 0 ID=cds-WP_038272794.1;Parent=gene-LPH40_RS04705;Dbxref=Genbank:WP_038272794.1;Name=WP_038272794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085600.1;locus_tag=LPH40_RS04705;product=DUF5625 family protein;protein_id=WP_038272794.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1164234 1164698 . + . ID=gene-LPH40_RS04710;Name=LPH40_RS04710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04710;old_locus_tag=LPH40_04710 NZ_CP087685.1 Protein Homology CDS 1164234 1164698 . + 0 ID=cds-WP_038272796.1;Parent=gene-LPH40_RS04710;Dbxref=Genbank:WP_038272796.1;Name=WP_038272796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895168.1;locus_tag=LPH40_RS04710;product=hypothetical protein;protein_id=WP_038272796.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1164737 1169200 . + . ID=gene-LPH40_RS04715;Name=LPH40_RS04715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04715;old_locus_tag=LPH40_04715 NZ_CP087685.1 Protein Homology CDS 1164737 1169200 . + 0 ID=cds-WP_160199316.1;Parent=gene-LPH40_RS04715;Dbxref=Genbank:WP_160199316.1;Name=WP_160199316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085599.1;locus_tag=LPH40_RS04715;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=WP_160199316.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1170190 1170414 . + . ID=gene-LPH40_RS04730;Name=LPH40_RS04730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04730;old_locus_tag=LPH40_04730 NZ_CP087685.1 GeneMarkS-2+ CDS 1170190 1170414 . + 0 ID=cds-WP_152536561.1;Parent=gene-LPH40_RS04730;Dbxref=Genbank:WP_152536561.1;Name=WP_152536561.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04730;product=hypothetical protein;protein_id=WP_152536561.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1171283 1172044 . - . ID=gene-LPH40_RS04735;Name=LPH40_RS04735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04735;old_locus_tag=LPH40_04735 NZ_CP087685.1 Protein Homology CDS 1171283 1172044 . - 0 ID=cds-WP_038269876.1;Parent=gene-LPH40_RS04735;Dbxref=Genbank:WP_038269876.1;Name=WP_038269876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927840.1;locus_tag=LPH40_RS04735;product=Bax inhibitor-1/YccA family protein;protein_id=WP_038269876.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1172218 1172294 . + . ID=gene-LPH40_RS04740;Name=LPH40_RS04740;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS04740;old_locus_tag=LPH40_04740 NZ_CP087685.1 tRNAscan-SE tRNA 1172218 1172294 . + . ID=rna-LPH40_RS04740;Parent=gene-LPH40_RS04740;anticodon=(pos:1172252..1172254);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04740;product=tRNA-Pro NZ_CP087685.1 tRNAscan-SE exon 1172218 1172294 . + . ID=exon-LPH40_RS04740-1;Parent=rna-LPH40_RS04740;anticodon=(pos:1172252..1172254);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04740;product=tRNA-Pro NZ_CP087685.1 RefSeq gene 1172369 1172447 . + . ID=gene-LPH40_RS04745;Name=LPH40_RS04745;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS04745;old_locus_tag=LPH40_04745 NZ_CP087685.1 tRNAscan-SE tRNA 1172369 1172447 . + . ID=rna-LPH40_RS04745;Parent=gene-LPH40_RS04745;anticodon=(pos:1172405..1172407);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04745;product=tRNA-Arg NZ_CP087685.1 tRNAscan-SE exon 1172369 1172447 . + . ID=exon-LPH40_RS04745-1;Parent=rna-LPH40_RS04745;anticodon=(pos:1172405..1172407);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04745;product=tRNA-Arg NZ_CP087685.1 RefSeq gene 1172487 1172563 . + . ID=gene-LPH40_RS04750;Name=LPH40_RS04750;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS04750;old_locus_tag=LPH40_04750 NZ_CP087685.1 tRNAscan-SE tRNA 1172487 1172563 . + . ID=rna-LPH40_RS04750;Parent=gene-LPH40_RS04750;anticodon=(pos:1172521..1172523);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04750;product=tRNA-His NZ_CP087685.1 tRNAscan-SE exon 1172487 1172563 . + . ID=exon-LPH40_RS04750-1;Parent=rna-LPH40_RS04750;anticodon=(pos:1172521..1172523);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04750;product=tRNA-His NZ_CP087685.1 RefSeq gene 1172665 1172740 . + . ID=gene-LPH40_RS04755;Name=LPH40_RS04755;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS04755;old_locus_tag=LPH40_04755 NZ_CP087685.1 tRNAscan-SE tRNA 1172665 1172740 . + . ID=rna-LPH40_RS04755;Parent=gene-LPH40_RS04755;anticodon=(pos:1172698..1172700);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04755;product=tRNA-Lys NZ_CP087685.1 tRNAscan-SE exon 1172665 1172740 . + . ID=exon-LPH40_RS04755-1;Parent=rna-LPH40_RS04755;anticodon=(pos:1172698..1172700);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04755;product=tRNA-Lys NZ_CP087685.1 RefSeq gene 1172744 1172935 . - . ID=gene-LPH40_RS04760;Name=LPH40_RS04760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04760;old_locus_tag=LPH40_04760 NZ_CP087685.1 GeneMarkS-2+ CDS 1172744 1172935 . - 0 ID=cds-WP_038269875.1;Parent=gene-LPH40_RS04760;Dbxref=Genbank:WP_038269875.1;Name=WP_038269875.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04760;product=hypothetical protein;protein_id=WP_038269875.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1173462 1173707 . - . ID=gene-LPH40_RS04765;Name=LPH40_RS04765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04765;old_locus_tag=LPH40_04765 NZ_CP087685.1 GeneMarkS-2+ CDS 1173462 1173707 . - 0 ID=cds-WP_152536560.1;Parent=gene-LPH40_RS04765;Dbxref=Genbank:WP_152536560.1;Name=WP_152536560.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04765;product=hypothetical protein;protein_id=WP_152536560.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1173744 1173950 . - . ID=gene-LPH40_RS04770;Name=LPH40_RS04770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04770;old_locus_tag=LPH40_04770 NZ_CP087685.1 GeneMarkS-2+ CDS 1173744 1173950 . - 0 ID=cds-WP_200866176.1;Parent=gene-LPH40_RS04770;Dbxref=Genbank:WP_200866176.1;Name=WP_200866176.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04770;product=hypothetical protein;protein_id=WP_200866176.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1173956 1174153 . - . ID=gene-LPH40_RS04775;Name=LPH40_RS04775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04775;old_locus_tag=LPH40_04775 NZ_CP087685.1 GeneMarkS-2+ CDS 1173956 1174153 . - 0 ID=cds-WP_200866175.1;Parent=gene-LPH40_RS04775;Dbxref=Genbank:WP_200866175.1;Name=WP_200866175.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04775;product=hypothetical protein;protein_id=WP_200866175.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1174345 1174806 . - . ID=gene-LPH40_RS04780;Name=LPH40_RS04780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04780;old_locus_tag=LPH40_04780 NZ_CP087685.1 Protein Homology CDS 1174345 1174806 . - 0 ID=cds-WP_038269873.1;Parent=gene-LPH40_RS04780;Dbxref=Genbank:WP_038269873.1;Name=WP_038269873.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452058.1;locus_tag=LPH40_RS04780;product=helix-turn-helix domain-containing protein;protein_id=WP_038269873.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1174911 1175732 . + . ID=gene-LPH40_RS04785;Name=LPH40_RS04785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04785;old_locus_tag=LPH40_04785 NZ_CP087685.1 Protein Homology CDS 1174911 1175732 . + 0 ID=cds-WP_038269871.1;Parent=gene-LPH40_RS04785;Dbxref=Genbank:WP_038269871.1;Name=WP_038269871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018971963.1;locus_tag=LPH40_RS04785;product=oxidoreductase;protein_id=WP_038269871.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1176927 1179497 . - . ID=gene-LPH40_RS04790;Name=LPH40_RS04790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04790;old_locus_tag=LPH40_04790 NZ_CP087685.1 Protein Homology CDS 1176927 1179497 . - 0 ID=cds-WP_038269868.1;Parent=gene-LPH40_RS04790;Dbxref=Genbank:WP_038269868.1;Name=WP_038269868.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098254.1;locus_tag=LPH40_RS04790;product=glycosyltransferase family 1 protein;protein_id=WP_038269868.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1179494 1179724 . - . ID=gene-LPH40_RS04795;Name=LPH40_RS04795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04795;old_locus_tag=LPH40_04795 NZ_CP087685.1 Protein Homology CDS 1179494 1179724 . - 0 ID=cds-WP_038269866.1;Parent=gene-LPH40_RS04795;Dbxref=Genbank:WP_038269866.1;Name=WP_038269866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852549.1;locus_tag=LPH40_RS04795;product=hypothetical protein;protein_id=WP_038269866.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1179746 1181074 . - . ID=gene-LPH40_RS04800;Name=LPH40_RS04800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04800;old_locus_tag=LPH40_04800 NZ_CP087685.1 Protein Homology CDS 1179746 1181074 . - 0 ID=cds-WP_038269863.1;Parent=gene-LPH40_RS04800;Dbxref=Genbank:WP_038269863.1;Name=WP_038269863.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088227.1;locus_tag=LPH40_RS04800;product=glycosyltransferase;protein_id=WP_038269863.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1181169 1183547 . + . ID=gene-LPH40_RS04805;Name=mrcB;gbkey=Gene;gene=mrcB;gene_biotype=protein_coding;locus_tag=LPH40_RS04805;old_locus_tag=LPH40_04805 NZ_CP087685.1 Protein Homology CDS 1181169 1183547 . + 0 ID=cds-WP_051482236.1;Parent=gene-LPH40_RS04805;Dbxref=Genbank:WP_051482236.1;Name=WP_051482236.1;Ontology_term=GO:0009252,GO:0046677,GO:0008233,GO:0008658,GO:0008955,GO:0009274;gbkey=CDS;gene=mrcB;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=peptidase activity|0008233||IEA,penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852547.1;locus_tag=LPH40_RS04805;product=penicillin-binding protein 1B;protein_id=WP_051482236.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1183544 1184095 . + . ID=gene-LPH40_RS04810;Name=LPH40_RS04810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04810;old_locus_tag=LPH40_04810 NZ_CP087685.1 Protein Homology CDS 1183544 1184095 . + 0 ID=cds-WP_038269860.1;Parent=gene-LPH40_RS04810;Dbxref=Genbank:WP_038269860.1;Name=WP_038269860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088223.1;locus_tag=LPH40_RS04810;product=hypothetical protein;protein_id=WP_038269860.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1184215 1186218 . + . ID=gene-LPH40_RS04815;Name=LPH40_RS04815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04815;old_locus_tag=LPH40_04815 NZ_CP087685.1 Protein Homology CDS 1184215 1186218 . + 0 ID=cds-WP_038269857.1;Parent=gene-LPH40_RS04815;Dbxref=Genbank:WP_038269857.1;Name=WP_038269857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338070.1;locus_tag=LPH40_RS04815;product=ATP-dependent DNA helicase;protein_id=WP_038269857.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1186238 1186783 . - . ID=gene-LPH40_RS04820;Name=LPH40_RS04820;end_range=1186783,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS04820;old_locus_tag=LPH40_04820;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1186238 1186783 . - 0 ID=cds-LPH40_RS04820;Parent=gene-LPH40_RS04820;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1186783,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574705.1;locus_tag=LPH40_RS04820;partial=true;product=D-alanyl-D-alanine carboxypeptidase family protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1187563 1188225 . - . ID=gene-LPH40_RS04825;Name=can;gbkey=Gene;gene=can;gene_biotype=protein_coding;locus_tag=LPH40_RS04825;old_locus_tag=LPH40_04825 NZ_CP087685.1 Protein Homology CDS 1187563 1188225 . - 0 ID=cds-WP_038269855.1;Parent=gene-LPH40_RS04825;Dbxref=Genbank:WP_038269855.1;Name=WP_038269855.1;Ontology_term=GO:0015976,GO:0004089,GO:0008270;gbkey=CDS;gene=can;go_function=carbonate dehydratase activity|0004089||IEA,zinc ion binding|0008270||IEA;go_process=carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902447.1;locus_tag=LPH40_RS04825;product=carbonate dehydratase;protein_id=WP_038269855.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1188952 1190064 . - . ID=gene-LPH40_RS04830;Name=LPH40_RS04830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04830;old_locus_tag=LPH40_04830 NZ_CP087685.1 Protein Homology CDS 1188952 1190064 . - 0 ID=cds-WP_038269853.1;Parent=gene-LPH40_RS04830;Dbxref=Genbank:WP_038269853.1;Name=WP_038269853.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893399.1;locus_tag=LPH40_RS04830;product=glycosyltransferase family 4 protein;protein_id=WP_038269853.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1190061 1190780 . - . ID=gene-LPH40_RS04835;Name=LPH40_RS04835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04835;old_locus_tag=LPH40_04835 NZ_CP087685.1 Protein Homology CDS 1190061 1190780 . - 0 ID=cds-WP_038269943.1;Parent=gene-LPH40_RS04835;Dbxref=Genbank:WP_038269943.1;Name=WP_038269943.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098260.1;locus_tag=LPH40_RS04835;product=polysaccharide deacetylase family protein;protein_id=WP_038269943.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1191151 1191312 . + . ID=gene-LPH40_RS04840;Name=LPH40_RS04840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04840;old_locus_tag=LPH40_04840 NZ_CP087685.1 Protein Homology CDS 1191151 1191312 . + 0 ID=cds-WP_171898068.1;Parent=gene-LPH40_RS04840;Dbxref=Genbank:WP_171898068.1;Name=WP_171898068.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088209.1;locus_tag=LPH40_RS04840;product=hypothetical protein;protein_id=WP_171898068.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1192519 1193526 . + . ID=gene-LPH40_RS04845;Name=LPH40_RS04845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04845;old_locus_tag=LPH40_04845 NZ_CP087685.1 Protein Homology CDS 1192519 1193526 . + 0 ID=cds-WP_038269940.1;Parent=gene-LPH40_RS04845;Dbxref=Genbank:WP_038269940.1;Name=WP_038269940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038713.1;locus_tag=LPH40_RS04845;product=methionine ABC transporter ATP-binding protein;protein_id=WP_038269940.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1193523 1194230 . + . ID=gene-LPH40_RS04850;Name=LPH40_RS04850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04850;old_locus_tag=LPH40_04850 NZ_CP087685.1 Protein Homology CDS 1193523 1194230 . + 0 ID=cds-WP_051482234.1;Parent=gene-LPH40_RS04850;Dbxref=Genbank:WP_051482234.1;Name=WP_051482234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038712.1;locus_tag=LPH40_RS04850;product=ABC transporter permease;protein_id=WP_051482234.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1194328 1195113 . + . ID=gene-LPH40_RS04855;Name=LPH40_RS04855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04855;old_locus_tag=LPH40_04855 NZ_CP087685.1 Protein Homology CDS 1194328 1195113 . + 0 ID=cds-WP_038269848.1;Parent=gene-LPH40_RS04855;Dbxref=Genbank:WP_038269848.1;Name=WP_038269848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893393.1;locus_tag=LPH40_RS04855;product=MetQ/NlpA family ABC transporter substrate-binding protein;protein_id=WP_038269848.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1195211 1195855 . - . ID=gene-LPH40_RS04860;Name=LPH40_RS04860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04860;old_locus_tag=LPH40_04860 NZ_CP087685.1 Protein Homology CDS 1195211 1195855 . - 0 ID=cds-WP_038269846.1;Parent=gene-LPH40_RS04860;Dbxref=Genbank:WP_038269846.1;Name=WP_038269846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974312.1;locus_tag=LPH40_RS04860;product=outer membrane beta-barrel protein;protein_id=WP_038269846.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1196571 1196882 . + . ID=gene-LPH40_RS04865;Name=LPH40_RS04865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04865;old_locus_tag=LPH40_04865 NZ_CP087685.1 GeneMarkS-2+ CDS 1196571 1196882 . + 0 ID=cds-WP_038269844.1;Parent=gene-LPH40_RS04865;Dbxref=Genbank:WP_038269844.1;Name=WP_038269844.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04865;product=hypothetical protein;protein_id=WP_038269844.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1197074 1198726 . + . ID=gene-LPH40_RS04870;Name=aceF;gbkey=Gene;gene=aceF;gene_biotype=protein_coding;locus_tag=LPH40_RS04870;old_locus_tag=LPH40_04870 NZ_CP087685.1 Protein Homology CDS 1197074 1198726 . + 0 ID=cds-WP_038269842.1;Parent=gene-LPH40_RS04870;Dbxref=Genbank:WP_038269842.1;Name=WP_038269842.1;Ontology_term=GO:0006086,GO:0004742,GO:0045254;gbkey=CDS;gene=aceF;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=dihydrolipoyllysine-residue acetyltransferase activity|0004742||IEA;go_process=acetyl-CoA biosynthetic process from pyruvate|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893389.1;locus_tag=LPH40_RS04870;product=dihydrolipoyllysine-residue acetyltransferase;protein_id=WP_038269842.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1199296 1201107 . + . ID=gene-LPH40_RS04875;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=LPH40_RS04875;old_locus_tag=LPH40_04875 NZ_CP087685.1 Protein Homology CDS 1199296 1201107 . + 0 ID=cds-WP_038269840.1;Parent=gene-LPH40_RS04875;Dbxref=Genbank:WP_038269840.1;Name=WP_038269840.1;Ontology_term=GO:0006096,GO:0045454,GO:0051068,GO:0004148;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase activity|0004148||IEA;go_process=glycolytic process|0006096||IEA,cell redox homeostasis|0045454||IEA,dihydrolipoamide metabolic process|0051068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084365.1;locus_tag=LPH40_RS04875;product=dihydrolipoyl dehydrogenase;protein_id=WP_038269840.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1201401 1201529 . - . ID=gene-LPH40_RS11980;Name=LPH40_RS11980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11980 NZ_CP087685.1 GeneMarkS-2+ CDS 1201401 1201529 . - 0 ID=cds-WP_267903163.1;Parent=gene-LPH40_RS11980;Dbxref=Genbank:WP_267903163.1;Name=WP_267903163.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11980;product=hypothetical protein;protein_id=WP_267903163.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1201810 1202862 . + . ID=gene-LPH40_RS04880;Name=LPH40_RS04880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04880;old_locus_tag=LPH40_04880 NZ_CP087685.1 Protein Homology CDS 1201810 1202862 . + 0 ID=cds-WP_051482233.1;Parent=gene-LPH40_RS04880;Dbxref=Genbank:WP_051482233.1;Name=WP_051482233.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013884.2;locus_tag=LPH40_RS04880;product=acyltransferase;protein_id=WP_051482233.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1203070 1203972 . - . ID=gene-LPH40_RS04885;Name=LPH40_RS04885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04885;old_locus_tag=LPH40_04885 NZ_CP087685.1 Protein Homology CDS 1203070 1203972 . - 0 ID=cds-WP_038269838.1;Parent=gene-LPH40_RS04885;Dbxref=Genbank:WP_038269838.1;Name=WP_038269838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084369.1;locus_tag=LPH40_RS04885;product=cation diffusion facilitator family transporter;protein_id=WP_038269838.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1205502 1206707 . - . ID=gene-LPH40_RS04890;Name=LPH40_RS04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04890;old_locus_tag=LPH40_04890 NZ_CP087685.1 Protein Homology CDS 1205502 1206707 . - 0 ID=cds-WP_038269836.1;Parent=gene-LPH40_RS04890;Dbxref=Genbank:WP_038269836.1;Name=WP_038269836.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014038152.1;locus_tag=LPH40_RS04890;product=O-succinylhomoserine (thiol)-lyase;protein_id=WP_038269836.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1206704 1207732 . - . ID=gene-LPH40_RS04895;Name=LPH40_RS04895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04895;old_locus_tag=LPH40_04895 NZ_CP087685.1 Protein Homology CDS 1206704 1207732 . - 0 ID=cds-WP_038269931.1;Parent=gene-LPH40_RS04895;Dbxref=Genbank:WP_038269931.1;Name=WP_038269931.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084371.1;locus_tag=LPH40_RS04895;product=homoserine O-succinyltransferase;protein_id=WP_038269931.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1208053 1208925 . + . ID=gene-LPH40_RS04900;Name=LPH40_RS04900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04900;old_locus_tag=LPH40_04900 NZ_CP087685.1 Protein Homology CDS 1208053 1208925 . + 0 ID=cds-WP_038269928.1;Parent=gene-LPH40_RS04900;Dbxref=Genbank:WP_038269928.1;Name=WP_038269928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851712.1;locus_tag=LPH40_RS04900;product=M23 family metallopeptidase;protein_id=WP_038269928.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1211341 1212129 . + . ID=gene-LPH40_RS04905;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=LPH40_RS04905;old_locus_tag=LPH40_04905 NZ_CP087685.1 Protein Homology CDS 1211341 1212129 . + 0 ID=cds-WP_038269831.1;Parent=gene-LPH40_RS04905;Dbxref=Genbank:WP_038269831.1;Name=WP_038269831.1;Ontology_term=GO:0008252;gbkey=CDS;gene=surE;go_function=nucleotidase activity|0008252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084374.1;locus_tag=LPH40_RS04905;product=5'/3'-nucleotidase SurE;protein_id=WP_038269831.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1212126 1212803 . + . ID=gene-LPH40_RS04910;Name=LPH40_RS04910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04910;old_locus_tag=LPH40_04910 NZ_CP087685.1 Protein Homology CDS 1212126 1212803 . + 0 ID=cds-WP_038269829.1;Parent=gene-LPH40_RS04910;Dbxref=Genbank:WP_038269829.1;Name=WP_038269829.1;Ontology_term=GO:0036211,GO:0004719;gbkey=CDS;go_function=protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|0004719||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503664.1;locus_tag=LPH40_RS04910;product=protein-L-isoaspartate(D-aspartate) O-methyltransferase;protein_id=WP_038269829.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1212828 1213442 . + . ID=gene-LPH40_RS04915;Name=LPH40_RS04915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04915;old_locus_tag=LPH40_04915 NZ_CP087685.1 Protein Homology CDS 1212828 1213442 . + 0 ID=cds-WP_038269827.1;Parent=gene-LPH40_RS04915;Dbxref=Genbank:WP_038269827.1;Name=WP_038269827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481846.1;locus_tag=LPH40_RS04915;product=YqaA family protein;protein_id=WP_038269827.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1213454 1214224 . + . ID=gene-LPH40_RS04920;Name=LPH40_RS04920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04920;old_locus_tag=LPH40_04920 NZ_CP087685.1 Protein Homology CDS 1213454 1214224 . + 0 ID=cds-WP_051482232.1;Parent=gene-LPH40_RS04920;Dbxref=Genbank:WP_051482232.1;Name=WP_051482232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088187.1;locus_tag=LPH40_RS04920;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=WP_051482232.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1214808 1214884 . + . ID=gene-LPH40_RS04925;Name=LPH40_RS04925;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS04925;old_locus_tag=LPH40_04925 NZ_CP087685.1 tRNAscan-SE tRNA 1214808 1214884 . + . ID=rna-LPH40_RS04925;Parent=gene-LPH40_RS04925;anticodon=(pos:1214842..1214844);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04925;product=tRNA-Pro NZ_CP087685.1 tRNAscan-SE exon 1214808 1214884 . + . ID=exon-LPH40_RS04925-1;Parent=rna-LPH40_RS04925;anticodon=(pos:1214842..1214844);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS04925;product=tRNA-Pro NZ_CP087685.1 RefSeq pseudogene 1215958 1217433 . - . ID=gene-LPH40_RS04930;Name=LPH40_RS04930;end_range=1217433,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS04930;old_locus_tag=LPH40_04930;partial=true;pseudo=true;start_range=.,1215958 NZ_CP087685.1 Protein Homology CDS 1215958 1217433 . - 0 ID=cds-LPH40_RS04930;Parent=gene-LPH40_RS04930;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1217433,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157452.1;locus_tag=LPH40_RS04930;partial=true;product=PAS domain-containing sensor histidine kinase;pseudo=true;start_range=.,1215958;transl_table=11 NZ_CP087685.1 RefSeq gene 1218099 1219187 . - . ID=gene-LPH40_RS04935;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=LPH40_RS04935;old_locus_tag=LPH40_04935 NZ_CP087685.1 Protein Homology CDS 1218099 1219187 . - 0 ID=cds-WP_038269820.1;Parent=gene-LPH40_RS04935;Dbxref=Genbank:WP_038269820.1;Name=WP_038269820.1;Ontology_term=GO:0009252,GO:0008784;gbkey=CDS;gene=alr;go_function=alanine racemase activity|0008784||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088182.1;locus_tag=LPH40_RS04935;product=alanine racemase;protein_id=WP_038269820.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1219200 1220474 . - . ID=gene-LPH40_RS04940;Name=LPH40_RS04940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04940;old_locus_tag=LPH40_04940 NZ_CP087685.1 Protein Homology CDS 1219200 1220474 . - 0 ID=cds-WP_038269817.1;Parent=gene-LPH40_RS04940;Dbxref=Genbank:WP_038269817.1;Name=WP_038269817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088180.1;locus_tag=LPH40_RS04940;product=D-amino acid dehydrogenase;protein_id=WP_038269817.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1220782 1220940 . - . ID=gene-LPH40_RS04945;Name=LPH40_RS04945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04945;old_locus_tag=LPH40_04945 NZ_CP087685.1 GeneMarkS-2+ CDS 1220782 1220940 . - 0 ID=cds-WP_160165111.1;Parent=gene-LPH40_RS04945;Dbxref=Genbank:WP_160165111.1;Name=WP_160165111.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04945;product=hypothetical protein;protein_id=WP_160165111.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1220957 1221424 . + . ID=gene-LPH40_RS04950;Name=msrB;gbkey=Gene;gene=msrB;gene_biotype=protein_coding;locus_tag=LPH40_RS04950;old_locus_tag=LPH40_04950 NZ_CP087685.1 Protein Homology CDS 1220957 1221424 . + 0 ID=cds-WP_038269923.1;Parent=gene-LPH40_RS04950;Dbxref=Genbank:WP_038269923.1;Name=WP_038269923.1;Ontology_term=GO:0006979,GO:0030091,GO:0033743;gbkey=CDS;gene=msrB;go_function=peptide-methionine (R)-S-oxide reductase activity|0033743||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088178.1;locus_tag=LPH40_RS04950;product=peptide-methionine (R)-S-oxide reductase MsrB;protein_id=WP_038269923.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1222015 1223070 . + . ID=gene-LPH40_RS04955;Name=LPH40_RS04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04955;old_locus_tag=LPH40_04955 NZ_CP087685.1 Protein Homology CDS 1222015 1223070 . + 0 ID=cds-WP_038269813.1;Parent=gene-LPH40_RS04955;Dbxref=Genbank:WP_038269813.1;Name=WP_038269813.1;Ontology_term=GO:0005975;gbkey=CDS;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970189.1;locus_tag=LPH40_RS04955;product=glycosyl hydrolase family 18 protein;protein_id=WP_038269813.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1223154 1225589 . + . ID=gene-LPH40_RS04960;Name=LPH40_RS04960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04960;old_locus_tag=LPH40_04960 NZ_CP087685.1 Protein Homology CDS 1223154 1225589 . + 0 ID=cds-WP_038269811.1;Parent=gene-LPH40_RS04960;Dbxref=Genbank:WP_038269811.1;Name=WP_038269811.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851724.1;locus_tag=LPH40_RS04960;product=family 20 glycosylhydrolase;protein_id=WP_038269811.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1225610 1228291 . + . ID=gene-LPH40_RS04965;Name=LPH40_RS04965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04965;old_locus_tag=LPH40_04965 NZ_CP087685.1 Protein Homology CDS 1225610 1228291 . + 0 ID=cds-WP_038269809.1;Parent=gene-LPH40_RS04965;Dbxref=Genbank:WP_038269809.1;Name=WP_038269809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088171.1;locus_tag=LPH40_RS04965;product=glycoside hydrolase family 2 protein;protein_id=WP_038269809.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1228337 1230991 . + . ID=gene-LPH40_RS04970;Name=LPH40_RS04970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04970;old_locus_tag=LPH40_04970 NZ_CP087685.1 Protein Homology CDS 1228337 1230991 . + 0 ID=cds-WP_038269807.1;Parent=gene-LPH40_RS04970;Dbxref=Genbank:WP_038269807.1;Name=WP_038269807.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338083.1;locus_tag=LPH40_RS04970;product=glycoside hydrolase family 3 protein;protein_id=WP_038269807.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1231118 1231264 . + . ID=gene-LPH40_RS04975;Name=LPH40_RS04975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04975;old_locus_tag=LPH40_04975 NZ_CP087685.1 GeneMarkS-2+ CDS 1231118 1231264 . + 0 ID=cds-WP_160165110.1;Parent=gene-LPH40_RS04975;Dbxref=Genbank:WP_160165110.1;Name=WP_160165110.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS04975;product=hypothetical protein;protein_id=WP_160165110.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1231373 1232899 . + . ID=gene-LPH40_RS04980;Name=LPH40_RS04980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04980;old_locus_tag=LPH40_04980 NZ_CP087685.1 Protein Homology CDS 1231373 1232899 . + 0 ID=cds-WP_038269805.1;Parent=gene-LPH40_RS04980;Dbxref=Genbank:WP_038269805.1;Name=WP_038269805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084411.1;locus_tag=LPH40_RS04980;product=glycoside hydrolase family 125 protein;protein_id=WP_038269805.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1232957 1235353 . + . ID=gene-LPH40_RS04985;Name=LPH40_RS04985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04985;old_locus_tag=LPH40_04985 NZ_CP087685.1 Protein Homology CDS 1232957 1235353 . + 0 ID=cds-WP_038269803.1;Parent=gene-LPH40_RS04985;Dbxref=Genbank:WP_038269803.1;Name=WP_038269803.1;Ontology_term=GO:0005975,GO:0030246;gbkey=CDS;go_function=carbohydrate binding|0030246||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084413.1;locus_tag=LPH40_RS04985;product=GH92 family glycosyl hydrolase;protein_id=WP_038269803.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1235539 1237419 . + . ID=gene-LPH40_RS04990;Name=LPH40_RS04990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS04990;old_locus_tag=LPH40_04990 NZ_CP087685.1 Protein Homology CDS 1235539 1237419 . + 0 ID=cds-WP_051482231.1;Parent=gene-LPH40_RS04990;Dbxref=Genbank:WP_051482231.1;Name=WP_051482231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348229.1;locus_tag=LPH40_RS04990;product=beta-galactosidase;protein_id=WP_051482231.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1237709 1238701 . - . ID=gene-LPH40_RS04995;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=LPH40_RS04995;old_locus_tag=LPH40_04995 NZ_CP087685.1 Protein Homology CDS 1237709 1238701 . - 0 ID=cds-WP_038269801.1;Parent=gene-LPH40_RS04995;Dbxref=Genbank:WP_038269801.1;Name=WP_038269801.1;Ontology_term=GO:0008615,GO:0050570;gbkey=CDS;gene=pdxA;go_function=4-hydroxythreonine-4-phosphate dehydrogenase activity|0050570||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893359.1;locus_tag=LPH40_RS04995;product=4-hydroxythreonine-4-phosphate dehydrogenase PdxA;protein_id=WP_038269801.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1238706 1240070 . - . ID=gene-LPH40_RS05000;Name=LPH40_RS05000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05000;old_locus_tag=LPH40_05000 NZ_CP087685.1 Protein Homology CDS 1238706 1240070 . - 0 ID=cds-WP_038269799.1;Parent=gene-LPH40_RS05000;Dbxref=Genbank:WP_038269799.1;Name=WP_038269799.1;Ontology_term=GO:0003755;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851732.1;locus_tag=LPH40_RS05000;product=peptidylprolyl isomerase;protein_id=WP_038269799.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1240067 1242445 . - . ID=gene-LPH40_RS05005;Name=lptD;gbkey=Gene;gene=lptD;gene_biotype=protein_coding;locus_tag=LPH40_RS05005;old_locus_tag=LPH40_05005 NZ_CP087685.1 Protein Homology CDS 1240067 1242445 . - 0 ID=cds-WP_038269796.1;Parent=gene-LPH40_RS05005;Dbxref=Genbank:WP_038269796.1;Name=WP_038269796.1;gbkey=CDS;gene=lptD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084427.1;locus_tag=LPH40_RS05005;product=LPS-assembly protein LptD;protein_id=WP_038269796.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1243590 1243760 . + . ID=gene-LPH40_RS05010;Name=LPH40_RS05010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05010;old_locus_tag=LPH40_05010 NZ_CP087685.1 GeneMarkS-2+ CDS 1243590 1243760 . + 0 ID=cds-WP_160165108.1;Parent=gene-LPH40_RS05010;Dbxref=Genbank:WP_160165108.1;Name=WP_160165108.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05010;product=hypothetical protein;protein_id=WP_160165108.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1243822 1245030 . + . ID=gene-LPH40_RS05015;Name=ubiH;gbkey=Gene;gene=ubiH;gene_biotype=protein_coding;gene_synonym=visB;locus_tag=LPH40_RS05015;old_locus_tag=LPH40_05015 NZ_CP087685.1 Protein Homology CDS 1243822 1245030 . + 0 ID=cds-WP_038269792.1;Parent=gene-LPH40_RS05015;Dbxref=Genbank:WP_038269792.1;Name=WP_038269792.1;Ontology_term=GO:0006744,GO:0008681,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiH;go_function=2-octaprenyl-6-methoxyphenol hydroxylase activity|0008681||IEA,oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084429.1;locus_tag=LPH40_RS05015;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_038269792.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1245027 1246208 . + . ID=gene-LPH40_RS05020;Name=LPH40_RS05020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05020;old_locus_tag=LPH40_05020 NZ_CP087685.1 Protein Homology CDS 1245027 1246208 . + 0 ID=cds-WP_038269789.1;Parent=gene-LPH40_RS05020;Dbxref=Genbank:WP_038269789.1;Name=WP_038269789.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088154.1;locus_tag=LPH40_RS05020;product=UbiH/UbiF family hydroxylase;protein_id=WP_038269789.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1246392 1247192 . - . ID=gene-LPH40_RS05025;Name=LPH40_RS05025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05025;old_locus_tag=LPH40_05025 NZ_CP087685.1 Protein Homology CDS 1246392 1247192 . - 0 ID=cds-WP_268746634.1;Parent=gene-LPH40_RS05025;Dbxref=Genbank:WP_268746634.1;Name=WP_268746634.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018431.2;locus_tag=LPH40_RS05025;product=AraC family transcriptional regulator;protein_id=WP_268746634.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1247492 1248094 . + . ID=gene-LPH40_RS05030;Name=LPH40_RS05030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05030;old_locus_tag=LPH40_05030 NZ_CP087685.1 Protein Homology CDS 1247492 1248094 . + 0 ID=cds-WP_038269784.1;Parent=gene-LPH40_RS05030;Dbxref=Genbank:WP_038269784.1;Name=WP_038269784.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014573.2;locus_tag=LPH40_RS05030;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_038269784.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1248126 1248278 . + . ID=gene-LPH40_RS05035;Name=LPH40_RS05035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05035;old_locus_tag=LPH40_05035 NZ_CP087685.1 GeneMarkS-2+ CDS 1248126 1248278 . + 0 ID=cds-WP_160165107.1;Parent=gene-LPH40_RS05035;Dbxref=Genbank:WP_160165107.1;Name=WP_160165107.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05035;product=hypothetical protein;protein_id=WP_160165107.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1248490 1249467 . - . ID=gene-LPH40_RS05040;Name=LPH40_RS05040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05040;old_locus_tag=LPH40_05040 NZ_CP087685.1 Protein Homology CDS 1248490 1249467 . - 0 ID=cds-WP_038269781.1;Parent=gene-LPH40_RS05040;Dbxref=Genbank:WP_038269781.1;Name=WP_038269781.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477207.1;locus_tag=LPH40_RS05040;product=LysR family transcriptional regulator;protein_id=WP_038269781.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1249619 1251049 . + . ID=gene-LPH40_RS05045;Name=cysG;gbkey=Gene;gene=cysG;gene_biotype=protein_coding;locus_tag=LPH40_RS05045;old_locus_tag=LPH40_05045 NZ_CP087685.1 Protein Homology CDS 1249619 1251049 . + 0 ID=cds-WP_038269779.1;Parent=gene-LPH40_RS05045;Dbxref=Genbank:WP_038269779.1;Name=WP_038269779.1;Ontology_term=GO:0019354,GO:0004851,GO:0043115,GO:0051266,GO:0051287;gbkey=CDS;gene=cysG;go_function=uroporphyrin-III C-methyltransferase activity|0004851||IEA,precorrin-2 dehydrogenase activity|0043115||IEA,sirohydrochlorin ferrochelatase activity|0051266||IEA,NAD binding|0051287||IEA;go_process=siroheme biosynthetic process|0019354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851739.1;locus_tag=LPH40_RS05045;product=siroheme synthase CysG;protein_id=WP_038269779.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1251109 1252068 . + . ID=gene-LPH40_RS05050;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;locus_tag=LPH40_RS05050;old_locus_tag=LPH40_05050 NZ_CP087685.1 Protein Homology CDS 1251109 1252068 . + 0 ID=cds-WP_038269776.1;Parent=gene-LPH40_RS05050;Dbxref=Genbank:WP_038269776.1;Name=WP_038269776.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysK;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851740.1;locus_tag=LPH40_RS05050;product=cysteine synthase A;protein_id=WP_038269776.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1252182 1252502 . - . ID=gene-LPH40_RS05055;Name=LPH40_RS05055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05055;old_locus_tag=LPH40_05055 NZ_CP087685.1 GeneMarkS-2+ CDS 1252182 1252502 . - 0 ID=cds-WP_038269774.1;Parent=gene-LPH40_RS05055;Dbxref=Genbank:WP_038269774.1;Name=WP_038269774.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05055;product=hypothetical protein;protein_id=WP_038269774.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1253494 1254498 . - . ID=gene-LPH40_RS05060;Name=LPH40_RS05060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05060;old_locus_tag=LPH40_05060 NZ_CP087685.1 Protein Homology CDS 1253494 1254498 . - 0 ID=cds-WP_038269772.1;Parent=gene-LPH40_RS05060;Dbxref=Genbank:WP_038269772.1;Name=WP_038269772.1;Ontology_term=GO:0006096,GO:0004332;gbkey=CDS;go_function=fructose-bisphosphate aldolase activity|0004332||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437525.1;locus_tag=LPH40_RS05060;product=fructose-bisphosphate aldolase class I;protein_id=WP_038269772.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1254601 1254930 . - . ID=gene-LPH40_RS05065;Name=LPH40_RS05065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05065;old_locus_tag=LPH40_05065 NZ_CP087685.1 GeneMarkS-2+ CDS 1254601 1254930 . - 0 ID=cds-WP_038269769.1;Parent=gene-LPH40_RS05065;Dbxref=Genbank:WP_038269769.1;Name=WP_038269769.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05065;product=hypothetical protein;protein_id=WP_038269769.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1254932 1255087 . - . ID=gene-LPH40_RS05070;Name=LPH40_RS05070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05070;old_locus_tag=LPH40_05070 NZ_CP087685.1 GeneMarkS-2+ CDS 1254932 1255087 . - 0 ID=cds-WP_160199314.1;Parent=gene-LPH40_RS05070;Dbxref=Genbank:WP_160199314.1;Name=WP_160199314.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05070;product=hypothetical protein;protein_id=WP_160199314.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1255271 1256737 . - . ID=gene-LPH40_RS05075;Name=pyk;gbkey=Gene;gene=pyk;gene_biotype=protein_coding;locus_tag=LPH40_RS05075;old_locus_tag=LPH40_05075 NZ_CP087685.1 Protein Homology CDS 1255271 1256737 . - 0 ID=cds-WP_038269766.1;Parent=gene-LPH40_RS05075;Dbxref=Genbank:WP_038269766.1;Name=WP_038269766.1;Ontology_term=GO:0006096,GO:0004743,GO:0005737;gbkey=CDS;gene=pyk;go_component=cytoplasm|0005737||IEA;go_function=pyruvate kinase activity|0004743||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487265.1;locus_tag=LPH40_RS05075;product=pyruvate kinase;protein_id=WP_038269766.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1257456 1258631 . - . ID=gene-LPH40_RS05080;Name=LPH40_RS05080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05080;old_locus_tag=LPH40_05080 NZ_CP087685.1 Protein Homology CDS 1257456 1258631 . - 0 ID=cds-WP_038269917.1;Parent=gene-LPH40_RS05080;Dbxref=Genbank:WP_038269917.1;Name=WP_038269917.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445624.1;locus_tag=LPH40_RS05080;product=phosphoglycerate kinase;protein_id=WP_038269917.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1259347 1259520 . - . ID=gene-LPH40_RS05085;Name=LPH40_RS05085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05085;old_locus_tag=LPH40_05085 NZ_CP087685.1 GeneMarkS-2+ CDS 1259347 1259520 . - 0 ID=cds-WP_160165105.1;Parent=gene-LPH40_RS05085;Dbxref=Genbank:WP_160165105.1;Name=WP_160165105.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05085;product=hypothetical protein;protein_id=WP_160165105.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1259990 1260310 . + . ID=gene-LPH40_RS05090;Name=LPH40_RS05090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05090;old_locus_tag=LPH40_05090 NZ_CP087685.1 GeneMarkS-2+ CDS 1259990 1260310 . + 0 ID=cds-WP_038269764.1;Parent=gene-LPH40_RS05090;Dbxref=Genbank:WP_038269764.1;Name=WP_038269764.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05090;product=hypothetical protein;protein_id=WP_038269764.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1260592 1261995 . + . ID=gene-LPH40_RS05095;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=LPH40_RS05095;old_locus_tag=LPH40_05095 NZ_CP087685.1 Protein Homology CDS 1260592 1261995 . + 0 ID=cds-WP_038269762.1;Parent=gene-LPH40_RS05095;Dbxref=Genbank:WP_038269762.1;Name=WP_038269762.1;Ontology_term=GO:0006424,GO:0004818,GO:0009332;gbkey=CDS;gene=gltX;go_component=glutamate-tRNA ligase complex|0009332||IEA;go_function=glutamate-tRNA ligase activity|0004818||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237481.1;locus_tag=LPH40_RS05095;product=glutamate--tRNA ligase;protein_id=WP_038269762.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1262013 1262522 . + . ID=gene-LPH40_RS05100;Name=LPH40_RS05100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05100;old_locus_tag=LPH40_05100 NZ_CP087685.1 Protein Homology CDS 1262013 1262522 . + 0 ID=cds-WP_038269759.1;Parent=gene-LPH40_RS05100;Dbxref=Genbank:WP_038269759.1;Name=WP_038269759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084453.1;locus_tag=LPH40_RS05100;product=Fur family transcriptional regulator;protein_id=WP_038269759.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1262747 1262992 . + . ID=gene-LPH40_RS05105;Name=LPH40_RS05105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05105;old_locus_tag=LPH40_05105 NZ_CP087685.1 GeneMarkS-2+ CDS 1262747 1262992 . + 0 ID=cds-WP_152536557.1;Parent=gene-LPH40_RS05105;Dbxref=Genbank:WP_152536557.1;Name=WP_152536557.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05105;product=hypothetical protein;protein_id=WP_152536557.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1263275 1264933 . - . ID=gene-LPH40_RS05110;Name=LPH40_RS05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05110;old_locus_tag=LPH40_05110 NZ_CP087685.1 Protein Homology CDS 1263275 1264933 . - 0 ID=cds-WP_038269755.1;Parent=gene-LPH40_RS05110;Dbxref=Genbank:WP_038269755.1;Name=WP_038269755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088130.1;locus_tag=LPH40_RS05110;product=M28 family metallopeptidase;protein_id=WP_038269755.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1265039 1266613 . + . ID=gene-LPH40_RS05115;Name=LPH40_RS05115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05115;old_locus_tag=LPH40_05115 NZ_CP087685.1 Protein Homology CDS 1265039 1266613 . + 0 ID=cds-WP_114867228.1;Parent=gene-LPH40_RS05115;Dbxref=Genbank:WP_114867228.1;Name=WP_114867228.1;Ontology_term=GO:0071704,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=organic substance metabolic process|0071704||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084457.1;locus_tag=LPH40_RS05115;product=glycoside hydrolase family 5 protein;protein_id=WP_114867228.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1266655 1266819 . - . ID=gene-LPH40_RS05120;Name=LPH40_RS05120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05120;old_locus_tag=LPH40_05120 NZ_CP087685.1 GeneMarkS-2+ CDS 1266655 1266819 . - 0 ID=cds-WP_160165104.1;Parent=gene-LPH40_RS05120;Dbxref=Genbank:WP_160165104.1;Name=WP_160165104.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05120;product=hypothetical protein;protein_id=WP_160165104.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1267119 1269986 . + . ID=gene-LPH40_RS05125;Name=LPH40_RS05125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05125;old_locus_tag=LPH40_05125 NZ_CP087685.1 Protein Homology CDS 1267119 1269986 . + 0 ID=cds-WP_038269753.1;Parent=gene-LPH40_RS05125;Dbxref=Genbank:WP_038269753.1;Name=WP_038269753.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090532.1;locus_tag=LPH40_RS05125;product=pitrilysin family protein;protein_id=WP_038269753.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1271262 1271942 . - . ID=gene-LPH40_RS05130;Name=LPH40_RS05130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05130;old_locus_tag=LPH40_05130 NZ_CP087685.1 Protein Homology CDS 1271262 1271942 . - 0 ID=cds-WP_230428263.1;Parent=gene-LPH40_RS05130;Dbxref=Genbank:WP_230428263.1;Name=WP_230428263.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098281.1;locus_tag=LPH40_RS05130;product=DUF2076 domain-containing protein;protein_id=WP_230428263.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1272254 1273102 . + . ID=gene-LPH40_RS05135;Name=LPH40_RS05135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05135;old_locus_tag=LPH40_05135 NZ_CP087685.1 Protein Homology CDS 1272254 1273102 . + 0 ID=cds-WP_081755384.1;Parent=gene-LPH40_RS05135;Dbxref=Genbank:WP_081755384.1;Name=WP_081755384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338088.1;locus_tag=LPH40_RS05135;product=SAM-dependent methyltransferase;protein_id=WP_081755384.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1273938 1274540 . - . ID=gene-LPH40_RS11985;Name=LPH40_RS11985;end_range=1274540,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS11985;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1273938 1274540 . - 0 ID=cds-LPH40_RS11985;Parent=gene-LPH40_RS11985;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0030248;end_range=1274540,.;gbkey=CDS;go_function=cellulose binding|0030248||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003231419.1;locus_tag=LPH40_RS11985;partial=true;product=expansin EXLX1 family cellulose-binding protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1275063 1275656 . - . ID=gene-LPH40_RS11990;Name=LPH40_RS11990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS11990;partial=true;pseudo=true;start_range=.,1275063 NZ_CP087685.1 Protein Homology CDS 1275063 1275656 . - 0 ID=cds-LPH40_RS11990;Parent=gene-LPH40_RS11990;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0071704,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=organic substance metabolic process|0071704||IEA;inference=COORDINATES: protein motif:HMM:NF012377.2;locus_tag=LPH40_RS11990;partial=true;product=cellulase family glycosylhydrolase;pseudo=true;start_range=.,1275063;transl_table=11 NZ_CP087685.1 RefSeq gene 1276557 1279301 . - . ID=gene-LPH40_RS05145;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=LPH40_RS05145;old_locus_tag=LPH40_05145 NZ_CP087685.1 Protein Homology CDS 1276557 1279301 . - 0 ID=cds-WP_038269738.1;Parent=gene-LPH40_RS05145;Dbxref=Genbank:WP_038269738.1;Name=WP_038269738.1;Ontology_term=GO:0006605,GO:0006886,GO:0017038,GO:0005524;gbkey=CDS;gene=secA;go_function=ATP binding|0005524||IEA;go_process=protein targeting|0006605||IEA,intracellular protein transport|0006886||IEA,protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112773.1;locus_tag=LPH40_RS05145;product=preprotein translocase subunit SecA;protein_id=WP_038269738.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1279461 1280405 . - . ID=gene-LPH40_RS05150;Name=LPH40_RS05150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05150;old_locus_tag=LPH40_05150 NZ_CP087685.1 Protein Homology CDS 1279461 1280405 . - 0 ID=cds-WP_038269737.1;Parent=gene-LPH40_RS05150;Dbxref=Genbank:WP_038269737.1;Name=WP_038269737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158828.1;locus_tag=LPH40_RS05150;product=M23 family metallopeptidase;protein_id=WP_038269737.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1280417 1280863 . + . ID=gene-LPH40_RS05155;Name=LPH40_RS05155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05155;old_locus_tag=LPH40_05155 NZ_CP087685.1 Protein Homology CDS 1280417 1280863 . + 0 ID=cds-WP_038269735.1;Parent=gene-LPH40_RS05155;Dbxref=Genbank:WP_038269735.1;Name=WP_038269735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090517.1;locus_tag=LPH40_RS05155;product=DUF721 domain-containing protein;protein_id=WP_038269735.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1281015 1281929 . - . ID=gene-LPH40_RS05160;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=LPH40_RS05160;old_locus_tag=LPH40_05160 NZ_CP087685.1 Protein Homology CDS 1281015 1281929 . - 0 ID=cds-WP_038269734.1;Parent=gene-LPH40_RS05160;Dbxref=Genbank:WP_038269734.1;Name=WP_038269734.1;Ontology_term=GO:0009245,GO:0008759;gbkey=CDS;gene=lpxC;go_function=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|0008759||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893324.1;locus_tag=LPH40_RS05160;product=UDP-3-O-acyl-N-acetylglucosamine deacetylase;protein_id=WP_038269734.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1282288 1283517 . - . ID=gene-LPH40_RS05165;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;locus_tag=LPH40_RS05165;old_locus_tag=LPH40_05165 NZ_CP087685.1 Protein Homology CDS 1282288 1283517 . - 0 ID=cds-WP_038269912.1;Parent=gene-LPH40_RS05165;Dbxref=Genbank:WP_038269912.1;Name=WP_038269912.1;Ontology_term=GO:0000910,GO:0003924;gbkey=CDS;gene=ftsZ;go_function=GTPase activity|0003924||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017170527.1;locus_tag=LPH40_RS05165;product=cell division protein FtsZ;protein_id=WP_038269912.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1283690 1284925 . - . ID=gene-LPH40_RS05170;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=LPH40_RS05170;old_locus_tag=LPH40_05170 NZ_CP087685.1 Protein Homology CDS 1283690 1284925 . - 0 ID=cds-WP_038269733.1;Parent=gene-LPH40_RS05170;Dbxref=Genbank:WP_038269733.1;Name=WP_038269733.1;Ontology_term=GO:0043093,GO:0005515,GO:0005524;gbkey=CDS;gene=ftsA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA;go_process=FtsZ-dependent cytokinesis|0043093||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019398559.1;locus_tag=LPH40_RS05170;product=cell division protein FtsA;protein_id=WP_038269733.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1284922 1285758 . - . ID=gene-LPH40_RS05175;Name=LPH40_RS05175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05175;old_locus_tag=LPH40_05175 NZ_CP087685.1 Protein Homology CDS 1284922 1285758 . - 0 ID=cds-WP_038269909.1;Parent=gene-LPH40_RS05175;Dbxref=Genbank:WP_038269909.1;Name=WP_038269909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338090.1;locus_tag=LPH40_RS05175;product=cell division protein FtsQ/DivIB;protein_id=WP_038269909.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1285865 1286821 . - . ID=gene-LPH40_RS05180;Name=LPH40_RS05180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05180;old_locus_tag=LPH40_05180 NZ_CP087685.1 Protein Homology CDS 1285865 1286821 . - 0 ID=cds-WP_038269731.1;Parent=gene-LPH40_RS05180;Dbxref=Genbank:WP_038269731.1;Name=WP_038269731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851207.1;locus_tag=LPH40_RS05180;product=D-alanine--D-alanine ligase;protein_id=WP_038269731.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1286818 1288251 . - . ID=gene-LPH40_RS05185;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=LPH40_RS05185;old_locus_tag=LPH40_05185 NZ_CP087685.1 Protein Homology CDS 1286818 1288251 . - 0 ID=cds-WP_038269729.1;Parent=gene-LPH40_RS05185;Dbxref=Genbank:WP_038269729.1;Name=WP_038269729.1;Ontology_term=GO:0009252,GO:0008763;gbkey=CDS;gene=murC;go_function=UDP-N-acetylmuramate-L-alanine ligase activity|0008763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851208.1;locus_tag=LPH40_RS05185;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_038269729.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1288307 1289401 . - . ID=gene-LPH40_RS05190;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=LPH40_RS05190;old_locus_tag=LPH40_05190 NZ_CP087685.1 Protein Homology CDS 1288307 1289401 . - 0 ID=cds-WP_038269727.1;Parent=gene-LPH40_RS05190;Dbxref=Genbank:WP_038269727.1;Name=WP_038269727.1;Ontology_term=GO:0009252,GO:0050511;gbkey=CDS;gene=murG;go_function=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity|0050511||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084474.1;locus_tag=LPH40_RS05190;product=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase;protein_id=WP_038269727.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1289392 1290666 . - . ID=gene-LPH40_RS05195;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;locus_tag=LPH40_RS05195;old_locus_tag=LPH40_05195 NZ_CP087685.1 Protein Homology CDS 1289392 1290666 . - 0 ID=cds-WP_038269725.1;Parent=gene-LPH40_RS05195;Dbxref=Genbank:WP_038269725.1;Name=WP_038269725.1;Ontology_term=GO:0009252,GO:0051301,GO:0003674,GO:0016020;gbkey=CDS;gene=ftsW;go_component=membrane|0016020||IEA;go_function=molecular_function|0003674||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851210.1;locus_tag=LPH40_RS05195;product=putative lipid II flippase FtsW;protein_id=WP_038269725.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1290666 1291751 . - . ID=gene-LPH40_RS05200;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=LPH40_RS05200;old_locus_tag=LPH40_05200 NZ_CP087685.1 Protein Homology CDS 1290666 1291751 . - 0 ID=cds-WP_038269906.1;Parent=gene-LPH40_RS05200;Dbxref=Genbank:WP_038269906.1;Name=WP_038269906.1;Ontology_term=GO:0009252,GO:0008963;gbkey=CDS;gene=mraY;go_function=phospho-N-acetylmuramoyl-pentapeptide-transferase activity|0008963||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452808.1;locus_tag=LPH40_RS05200;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=WP_038269906.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1291741 1293147 . - . ID=gene-LPH40_RS05205;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=LPH40_RS05205;old_locus_tag=LPH40_05205 NZ_CP087685.1 Protein Homology CDS 1291741 1293147 . - 0 ID=cds-WP_038269723.1;Parent=gene-LPH40_RS05205;Dbxref=Genbank:WP_038269723.1;Name=WP_038269723.1;Ontology_term=GO:0009252,GO:0047480;gbkey=CDS;gene=murF;go_function=UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485287.1;locus_tag=LPH40_RS05205;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_038269723.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1293147 1294619 . - . ID=gene-LPH40_RS05210;Name=LPH40_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05210;old_locus_tag=LPH40_05210 NZ_CP087685.1 Protein Homology CDS 1293147 1294619 . - 0 ID=cds-WP_038269721.1;Parent=gene-LPH40_RS05210;Dbxref=Genbank:WP_038269721.1;Name=WP_038269721.1;Ontology_term=GO:0008360,GO:0009058,GO:0051301,GO:0005524,GO:0016881;gbkey=CDS;go_function=ATP binding|0005524||IEA,acid-amino acid ligase activity|0016881||IEA;go_process=regulation of cell shape|0008360||IEA,biosynthetic process|0009058||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084483.1;locus_tag=LPH40_RS05210;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=WP_038269721.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1294628 1296469 . - . ID=gene-LPH40_RS05215;Name=LPH40_RS05215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05215;old_locus_tag=LPH40_05215 NZ_CP087685.1 Protein Homology CDS 1294628 1296469 . - 0 ID=cds-WP_038269719.1;Parent=gene-LPH40_RS05215;Dbxref=Genbank:WP_038269719.1;Name=WP_038269719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098289.1;locus_tag=LPH40_RS05215;product=penicillin-binding protein 2;protein_id=WP_038269719.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1296466 1296729 . - . ID=gene-LPH40_RS05220;Name=ftsL;gbkey=Gene;gene=ftsL;gene_biotype=protein_coding;locus_tag=LPH40_RS05220;old_locus_tag=LPH40_05220 NZ_CP087685.1 Protein Homology CDS 1296466 1296729 . - 0 ID=cds-WP_038269717.1;Parent=gene-LPH40_RS05220;Dbxref=Genbank:WP_038269717.1;Name=WP_038269717.1;Ontology_term=GO:0000910,GO:0016020;gbkey=CDS;gene=ftsL;go_component=membrane|0016020||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010344441.1;locus_tag=LPH40_RS05220;product=cell division protein FtsL;protein_id=WP_038269717.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1296726 1297712 . - . ID=gene-LPH40_RS05225;Name=rsmH;gbkey=Gene;gene=rsmH;gene_biotype=protein_coding;locus_tag=LPH40_RS05225;old_locus_tag=LPH40_05225 NZ_CP087685.1 Protein Homology CDS 1296726 1297712 . - 0 ID=cds-WP_038269715.1;Parent=gene-LPH40_RS05225;Dbxref=Genbank:WP_038269715.1;Name=WP_038269715.1;Ontology_term=GO:0016434;gbkey=CDS;gene=rsmH;go_function=rRNA (cytosine) methyltransferase activity|0016434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382751.1;locus_tag=LPH40_RS05225;product=16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH;protein_id=WP_038269715.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1297723 1298178 . - . ID=gene-LPH40_RS05230;Name=LPH40_RS05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05230;old_locus_tag=LPH40_05230 NZ_CP087685.1 Protein Homology CDS 1297723 1298178 . - 0 ID=cds-WP_114867229.1;Parent=gene-LPH40_RS05230;Dbxref=Genbank:WP_114867229.1;Name=WP_114867229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367651.1;locus_tag=LPH40_RS05230;product=division/cell wall cluster transcriptional repressor MraZ;protein_id=WP_114867229.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1300240 1302102 . - . ID=gene-LPH40_RS05235;Name=LPH40_RS05235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05235;old_locus_tag=LPH40_05235 NZ_CP087685.1 Protein Homology CDS 1300240 1302102 . - 0 ID=cds-WP_038269710.1;Parent=gene-LPH40_RS05235;Dbxref=Genbank:WP_038269710.1;Name=WP_038269710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084493.1;locus_tag=LPH40_RS05235;product=SLC13 family permease;protein_id=WP_038269710.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1302133 1302867 . - . ID=gene-LPH40_RS05240;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;locus_tag=LPH40_RS05240;old_locus_tag=LPH40_05240 NZ_CP087685.1 Protein Homology CDS 1302133 1302867 . - 0 ID=cds-WP_038269708.1;Parent=gene-LPH40_RS05240;Dbxref=Genbank:WP_038269708.1;Name=WP_038269708.1;Ontology_term=GO:0006400,GO:0008176;gbkey=CDS;gene=trmB;go_function=tRNA (guanine-N7-)-methyltransferase activity|0008176||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893307.1;locus_tag=LPH40_RS05240;product=tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=WP_038269708.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1302864 1303658 . - . ID=gene-LPH40_RS05245;Name=LPH40_RS05245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05245;old_locus_tag=LPH40_05245 NZ_CP087685.1 Protein Homology CDS 1302864 1303658 . - 0 ID=cds-WP_038269905.1;Parent=gene-LPH40_RS05245;Dbxref=Genbank:WP_038269905.1;Name=WP_038269905.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031337090.1;locus_tag=LPH40_RS05245;product=thiazole synthase;protein_id=WP_038269905.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1303707 1303907 . - . ID=gene-LPH40_RS05250;Name=thiS;gbkey=Gene;gene=thiS;gene_biotype=protein_coding;locus_tag=LPH40_RS05250;old_locus_tag=LPH40_05250 NZ_CP087685.1 Protein Homology CDS 1303707 1303907 . - 0 ID=cds-WP_038269706.1;Parent=gene-LPH40_RS05250;Dbxref=Genbank:WP_038269706.1;Name=WP_038269706.1;Ontology_term=GO:0009228,GO:0003824;gbkey=CDS;gene=thiS;go_function=catalytic activity|0003824||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944633.1;locus_tag=LPH40_RS05250;product=sulfur carrier protein ThiS;protein_id=WP_038269706.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1304104 1305876 . + . ID=gene-LPH40_RS05255;Name=LPH40_RS05255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05255;old_locus_tag=LPH40_05255 NZ_CP087685.1 Protein Homology CDS 1304104 1305876 . + 0 ID=cds-WP_171898096.1;Parent=gene-LPH40_RS05255;Dbxref=Genbank:WP_171898096.1;Name=WP_171898096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914545.1;locus_tag=LPH40_RS05255;product=autotransporter domain-containing protein;protein_id=WP_171898096.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1305980 1306053 . + . ID=gene-LPH40_RS05260;Name=LPH40_RS05260;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS05260;old_locus_tag=LPH40_05260 NZ_CP087685.1 tRNAscan-SE tRNA 1305980 1306053 . + . ID=rna-LPH40_RS05260;Parent=gene-LPH40_RS05260;anticodon=(pos:1306012..1306014);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05260;product=tRNA-Gly NZ_CP087685.1 tRNAscan-SE exon 1305980 1306053 . + . ID=exon-LPH40_RS05260-1;Parent=rna-LPH40_RS05260;anticodon=(pos:1306012..1306014);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05260;product=tRNA-Gly NZ_CP087685.1 RefSeq gene 1306231 1306656 . - . ID=gene-LPH40_RS05265;Name=LPH40_RS05265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05265;old_locus_tag=LPH40_05265 NZ_CP087685.1 Protein Homology CDS 1306231 1306656 . - 0 ID=cds-WP_038269904.1;Parent=gene-LPH40_RS05265;Dbxref=Genbank:WP_038269904.1;Name=WP_038269904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571165.1;locus_tag=LPH40_RS05265;product=phosphotransferase;protein_id=WP_038269904.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1306643 1309009 . - . ID=gene-LPH40_RS05270;Name=LPH40_RS05270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05270;old_locus_tag=LPH40_05270 NZ_CP087685.1 Protein Homology CDS 1306643 1309009 . - 0 ID=cds-WP_038269903.1;Parent=gene-LPH40_RS05270;Dbxref=Genbank:WP_038269903.1;Name=WP_038269903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084505.1;locus_tag=LPH40_RS05270;product=MMPL family transporter;protein_id=WP_038269903.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1309193 1309837 . - . ID=gene-LPH40_RS05275;Name=LPH40_RS05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05275;old_locus_tag=LPH40_05275 NZ_CP087685.1 Protein Homology CDS 1309193 1309837 . - 0 ID=cds-WP_081755386.1;Parent=gene-LPH40_RS05275;Dbxref=Genbank:WP_081755386.1;Name=WP_081755386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084509.1;locus_tag=LPH40_RS05275;product=fatty acyl CoA synthetase;protein_id=WP_081755386.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1309764 1310744 . - . ID=gene-LPH40_RS05280;Name=LPH40_RS05280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05280;old_locus_tag=LPH40_05280 NZ_CP087685.1 Protein Homology CDS 1309764 1310744 . - 0 ID=cds-WP_038269702.1;Parent=gene-LPH40_RS05280;Dbxref=Genbank:WP_038269702.1;Name=WP_038269702.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084511.1;locus_tag=LPH40_RS05280;product=acyltransferase;protein_id=WP_038269702.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1310741 1311028 . - . ID=gene-LPH40_RS05285;Name=LPH40_RS05285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05285;old_locus_tag=LPH40_05285 NZ_CP087685.1 Protein Homology CDS 1310741 1311028 . - 0 ID=cds-WP_038269700.1;Parent=gene-LPH40_RS05285;Dbxref=Genbank:WP_038269700.1;Name=WP_038269700.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090455.1;locus_tag=LPH40_RS05285;product=beta-hydroxyacyl-ACP dehydratase;protein_id=WP_038269700.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1311238 1311874 . - . ID=gene-LPH40_RS05290;Name=LPH40_RS05290;end_range=1311874,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS05290;old_locus_tag=LPH40_05290;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1311238 1311874 . - 1 ID=cds-LPH40_RS05290;Parent=gene-LPH40_RS05290;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1311874,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010342703.1;locus_tag=LPH40_RS05290;partial=true;product=ketosynthase;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1311945 1312214 . - . ID=gene-LPH40_RS05295;Name=LPH40_RS05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05295;old_locus_tag=LPH40_05295 NZ_CP087685.1 Protein Homology CDS 1311945 1312214 . - 0 ID=cds-WP_038269698.1;Parent=gene-LPH40_RS05295;Dbxref=Genbank:WP_038269698.1;Name=WP_038269698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039083.1;locus_tag=LPH40_RS05295;product=phosphopantetheine-binding protein;protein_id=WP_038269698.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1312391 1312629 . + . ID=gene-LPH40_RS05300;Name=LPH40_RS05300;end_range=1312629,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS05300;old_locus_tag=LPH40_05300;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1312391 1312629 . + 0 ID=cds-LPH40_RS05300;Parent=gene-LPH40_RS05300;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0071949;end_range=1312629,.;gbkey=CDS;go_function=FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003476649.1;locus_tag=LPH40_RS05300;partial=true;product=FAD-dependent monooxygenase;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1312836 1313756 . + . ID=gene-LPH40_RS05305;Name=LPH40_RS05305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05305;old_locus_tag=LPH40_05305 NZ_CP087685.1 Protein Homology CDS 1312836 1313756 . + 0 ID=cds-WP_114867230.1;Parent=gene-LPH40_RS05305;Dbxref=Genbank:WP_114867230.1;Name=WP_114867230.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487396.1;locus_tag=LPH40_RS05305;product=pteridine-dependent deoxygenase;protein_id=WP_114867230.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1314060 1314635 . + . ID=gene-LPH40_RS05310;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=LPH40_RS05310;old_locus_tag=LPH40_05310 NZ_CP087685.1 Protein Homology CDS 1314060 1314635 . + 0 ID=cds-WP_038269697.1;Parent=gene-LPH40_RS05310;Dbxref=Genbank:WP_038269697.1;Name=WP_038269697.1;Ontology_term=GO:0009394,GO:0008829;gbkey=CDS;gene=dcd;go_function=dCTP deaminase activity|0008829||IEA;go_process=2'-deoxyribonucleotide metabolic process|0009394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912996.1;locus_tag=LPH40_RS05310;product=dCTP deaminase;protein_id=WP_038269697.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1315148 1316101 . - . ID=gene-LPH40_RS05315;Name=LPH40_RS05315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05315;old_locus_tag=LPH40_05315 NZ_CP087685.1 Protein Homology CDS 1315148 1316101 . - 0 ID=cds-WP_038269695.1;Parent=gene-LPH40_RS05315;Dbxref=Genbank:WP_038269695.1;Name=WP_038269695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852470.1;locus_tag=LPH40_RS05315;product=DUF1684 domain-containing protein;protein_id=WP_038269695.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1316101 1317972 . - . ID=gene-LPH40_RS05320;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=LPH40_RS05320;old_locus_tag=LPH40_05320 NZ_CP087685.1 Protein Homology CDS 1316101 1317972 . - 0 ID=cds-WP_038269692.1;Parent=gene-LPH40_RS05320;Dbxref=Genbank:WP_038269692.1;Name=WP_038269692.1;Ontology_term=GO:0006298,GO:0005524,GO:0016887,GO:0030983,GO:0032300;gbkey=CDS;gene=mutL;go_component=mismatch repair complex|0032300||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037442.1;locus_tag=LPH40_RS05320;product=DNA mismatch repair endonuclease MutL;protein_id=WP_038269692.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1318111 1319730 . - . ID=gene-LPH40_RS05325;Name=LPH40_RS05325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05325;old_locus_tag=LPH40_05325 NZ_CP087685.1 Protein Homology CDS 1318111 1319730 . - 0 ID=cds-WP_038269690.1;Parent=gene-LPH40_RS05325;Dbxref=Genbank:WP_038269690.1;Name=WP_038269690.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037443.1;locus_tag=LPH40_RS05325;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_038269690.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1319789 1320277 . - . ID=gene-LPH40_RS05330;Name=tsaE;gbkey=Gene;gene=tsaE;gene_biotype=protein_coding;locus_tag=LPH40_RS05330;old_locus_tag=LPH40_05330 NZ_CP087685.1 Protein Homology CDS 1319789 1320277 . - 0 ID=cds-WP_038269688.1;Parent=gene-LPH40_RS05330;Dbxref=Genbank:WP_038269688.1;Name=WP_038269688.1;Ontology_term=GO:0006400,GO:0016887,GO:0005737;gbkey=CDS;gene=tsaE;go_component=cytoplasm|0005737||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852467.1;locus_tag=LPH40_RS05330;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;protein_id=WP_038269688.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1320274 1321764 . - . ID=gene-LPH40_RS05335;Name=LPH40_RS05335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05335;old_locus_tag=LPH40_05335 NZ_CP087685.1 Protein Homology CDS 1320274 1321764 . - 0 ID=cds-WP_038269686.1;Parent=gene-LPH40_RS05335;Dbxref=Genbank:WP_038269686.1;Name=WP_038269686.1;Ontology_term=GO:0052855;gbkey=CDS;go_function=ADP-dependent NAD(P)H-hydrate dehydratase activity|0052855||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893280.1;locus_tag=LPH40_RS05335;product=NAD(P)H-hydrate dehydratase;protein_id=WP_038269686.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1322091 1323425 . + . ID=gene-LPH40_RS05340;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=LPH40_RS05340;old_locus_tag=LPH40_05340 NZ_CP087685.1 Protein Homology CDS 1322091 1323425 . + 0 ID=cds-WP_038269685.1;Parent=gene-LPH40_RS05340;Dbxref=Genbank:WP_038269685.1;Name=WP_038269685.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;gene=xseA;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994364.1;locus_tag=LPH40_RS05340;product=exodeoxyribonuclease VII large subunit;protein_id=WP_038269685.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1323486 1324742 . - . ID=gene-LPH40_RS05345;Name=LPH40_RS05345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05345;old_locus_tag=LPH40_05345 NZ_CP087685.1 Protein Homology CDS 1323486 1324742 . - 0 ID=cds-WP_230428260.1;Parent=gene-LPH40_RS05345;Dbxref=Genbank:WP_230428260.1;Name=WP_230428260.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017835.2;locus_tag=LPH40_RS05345;product=virulence factor;protein_id=WP_230428260.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1324839 1326641 . - . ID=gene-LPH40_RS05350;Name=LPH40_RS05350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05350;old_locus_tag=LPH40_05350 NZ_CP087685.1 Protein Homology CDS 1324839 1326641 . - 0 ID=cds-WP_038269895.1;Parent=gene-LPH40_RS05350;Dbxref=Genbank:WP_038269895.1;Name=WP_038269895.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338098.1;locus_tag=LPH40_RS05350;product=formylglycine-generating enzyme family protein;protein_id=WP_038269895.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1326764 1327855 . + . ID=gene-LPH40_RS05355;Name=rnd;gbkey=Gene;gene=rnd;gene_biotype=protein_coding;locus_tag=LPH40_RS05355;old_locus_tag=LPH40_05355 NZ_CP087685.1 Protein Homology CDS 1326764 1327855 . + 0 ID=cds-WP_038269683.1;Parent=gene-LPH40_RS05355;Dbxref=Genbank:WP_038269683.1;Name=WP_038269683.1;Ontology_term=GO:0006396,GO:0016891;gbkey=CDS;gene=rnd;go_function=endoribonuclease activity%2C producing 5'-phosphomonoesters|0016891||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893274.1;locus_tag=LPH40_RS05355;product=ribonuclease D;protein_id=WP_038269683.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1328098 1328502 . + . ID=gene-LPH40_RS05360;Name=LPH40_RS05360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05360;old_locus_tag=LPH40_05360 NZ_CP087685.1 Protein Homology CDS 1328098 1328502 . + 0 ID=cds-WP_038269681.1;Parent=gene-LPH40_RS05360;Dbxref=Genbank:WP_038269681.1;Name=WP_038269681.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084562.1;locus_tag=LPH40_RS05360;product=H-NS family nucleoid-associated regulatory protein;protein_id=WP_038269681.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1329947 1330889 . - . ID=gene-LPH40_RS05365;Name=LPH40_RS05365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS05365;old_locus_tag=LPH40_05365;pseudo=true NZ_CP087685.1 Protein Homology CDS 1329947 1330889 . - 0 ID=cds-LPH40_RS05365;Parent=gene-LPH40_RS05365;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159927.1;locus_tag=LPH40_RS05365;product=23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1330899 1331459 . - . ID=gene-LPH40_RS05370;Name=LPH40_RS05370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05370;old_locus_tag=LPH40_05370 NZ_CP087685.1 Protein Homology CDS 1330899 1331459 . - 0 ID=cds-WP_038269677.1;Parent=gene-LPH40_RS05370;Dbxref=Genbank:WP_038269677.1;Name=WP_038269677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572602.1;locus_tag=LPH40_RS05370;product=nucleoside deaminase;protein_id=WP_038269677.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1331810 1331886 . - . ID=gene-LPH40_RS05375;Name=LPH40_RS05375;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS05375;old_locus_tag=LPH40_05375 NZ_CP087685.1 tRNAscan-SE tRNA 1331810 1331886 . - . ID=rna-LPH40_RS05375;Parent=gene-LPH40_RS05375;anticodon=(pos:complement(1331850..1331852));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05375;product=tRNA-Pro NZ_CP087685.1 tRNAscan-SE exon 1331810 1331886 . - . ID=exon-LPH40_RS05375-1;Parent=rna-LPH40_RS05375;anticodon=(pos:complement(1331850..1331852));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05375;product=tRNA-Pro NZ_CP087685.1 RefSeq gene 1332009 1332365 . - . ID=gene-LPH40_RS05380;Name=LPH40_RS05380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05380;old_locus_tag=LPH40_05380 NZ_CP087685.1 Protein Homology CDS 1332009 1332365 . - 0 ID=cds-WP_038269675.1;Parent=gene-LPH40_RS05380;Dbxref=Genbank:WP_038269675.1;Name=WP_038269675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019182707.1;locus_tag=LPH40_RS05380;product=MerR family transcriptional regulator;protein_id=WP_038269675.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1332346 1332645 . - . ID=gene-LPH40_RS05385;Name=LPH40_RS05385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05385;old_locus_tag=LPH40_05385 NZ_CP087685.1 Protein Homology CDS 1332346 1332645 . - 0 ID=cds-WP_038269673.1;Parent=gene-LPH40_RS05385;Dbxref=Genbank:WP_038269673.1;Name=WP_038269673.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811076.1;locus_tag=LPH40_RS05385;product=integration host factor subunit alpha;protein_id=WP_038269673.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1332669 1335047 . - . ID=gene-LPH40_RS05390;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=LPH40_RS05390;old_locus_tag=LPH40_05390 NZ_CP087685.1 Protein Homology CDS 1332669 1335047 . - 0 ID=cds-WP_038269671.1;Parent=gene-LPH40_RS05390;Dbxref=Genbank:WP_038269671.1;Name=WP_038269671.1;Ontology_term=GO:0006432,GO:0004826,GO:0009328;gbkey=CDS;gene=pheT;go_component=phenylalanine-tRNA ligase complex|0009328||IEA;go_function=phenylalanine-tRNA ligase activity|0004826||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903311.1;locus_tag=LPH40_RS05390;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_038269671.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1335139 1336134 . - . ID=gene-LPH40_RS05395;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;locus_tag=LPH40_RS05395;old_locus_tag=LPH40_05395 NZ_CP087685.1 Protein Homology CDS 1335139 1336134 . - 0 ID=cds-WP_038269669.1;Parent=gene-LPH40_RS05395;Dbxref=Genbank:WP_038269669.1;Name=WP_038269669.1;Ontology_term=GO:0006432,GO:0004826,GO:0009328;gbkey=CDS;gene=pheS;go_component=phenylalanine-tRNA ligase complex|0009328||IEA;go_function=phenylalanine-tRNA ligase activity|0004826||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299936.1;locus_tag=LPH40_RS05395;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_038269669.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1336406 1336765 . - . ID=gene-LPH40_RS05400;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=LPH40_RS05400;old_locus_tag=LPH40_05400 NZ_CP087685.1 Protein Homology CDS 1336406 1336765 . - 0 ID=cds-WP_038269666.1;Parent=gene-LPH40_RS05400;Dbxref=Genbank:WP_038269666.1;Name=WP_038269666.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0005840;gbkey=CDS;gene=rplT;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037598.1;locus_tag=LPH40_RS05400;product=50S ribosomal protein L20;protein_id=WP_038269666.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1336776 1336973 . - . ID=gene-LPH40_RS05405;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=LPH40_RS05405;old_locus_tag=LPH40_05405 NZ_CP087685.1 Protein Homology CDS 1336776 1336973 . - 0 ID=cds-WP_038269890.1;Parent=gene-LPH40_RS05405;Dbxref=Genbank:WP_038269890.1;Name=WP_038269890.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmI;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410436.1;locus_tag=LPH40_RS05405;product=50S ribosomal protein L35;protein_id=WP_038269890.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1337215 1337742 . - . ID=gene-LPH40_RS05410;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=LPH40_RS05410;old_locus_tag=LPH40_05410 NZ_CP087685.1 Protein Homology CDS 1337215 1337742 . - 0 ID=cds-WP_081755382.1;Parent=gene-LPH40_RS05410;Dbxref=Genbank:WP_081755382.1;Name=WP_081755382.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infC;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660568.1;locus_tag=LPH40_RS05410;product=translation initiation factor IF-3;protein_id=WP_081755382.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1337810 1339717 . - . ID=gene-LPH40_RS05415;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=LPH40_RS05415;old_locus_tag=LPH40_05415 NZ_CP087685.1 Protein Homology CDS 1337810 1339717 . - 0 ID=cds-WP_038269664.1;Parent=gene-LPH40_RS05415;Dbxref=Genbank:WP_038269664.1;Name=WP_038269664.1;Ontology_term=GO:0006435,GO:0004829,GO:0005737;gbkey=CDS;gene=thrS;go_component=cytoplasm|0005737||IEA;go_function=threonine-tRNA ligase activity|0004829||IEA;go_process=threonyl-tRNA aminoacylation|0006435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090399.1;locus_tag=LPH40_RS05415;product=threonine--tRNA ligase;protein_id=WP_038269664.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1340885 1341169 . + . ID=gene-LPH40_RS05420;Name=LPH40_RS05420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05420;old_locus_tag=LPH40_05420 NZ_CP087685.1 Protein Homology CDS 1340885 1341169 . + 0 ID=cds-WP_038269663.1;Parent=gene-LPH40_RS05420;Dbxref=Genbank:WP_038269663.1;Name=WP_038269663.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183923.1;locus_tag=LPH40_RS05420;product=hypothetical protein;protein_id=WP_038269663.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1343459 1344340 . + . ID=gene-LPH40_RS05425;Name=rimK;gbkey=Gene;gene=rimK;gene_biotype=protein_coding;locus_tag=LPH40_RS05425;old_locus_tag=LPH40_05425 NZ_CP087685.1 Protein Homology CDS 1343459 1344340 . + 0 ID=cds-WP_038269662.1;Parent=gene-LPH40_RS05425;Dbxref=Genbank:WP_038269662.1;Name=WP_038269662.1;Ontology_term=GO:0036211,GO:0005524,GO:0046872;gbkey=CDS;gene=rimK;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090391.1;locus_tag=LPH40_RS05425;product=30S ribosomal protein S6--L-glutamate ligase;protein_id=WP_038269662.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1344994 1345671 . + . ID=gene-LPH40_RS05430;Name=LPH40_RS05430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05430;old_locus_tag=LPH40_05430 NZ_CP087685.1 Protein Homology CDS 1344994 1345671 . + 0 ID=cds-WP_038269661.1;Parent=gene-LPH40_RS05430;Dbxref=Genbank:WP_038269661.1;Name=WP_038269661.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169438.1;locus_tag=LPH40_RS05430;product=response regulator transcription factor;protein_id=WP_038269661.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1345664 1347001 . + . ID=gene-LPH40_RS05435;Name=LPH40_RS05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05435;old_locus_tag=LPH40_05435 NZ_CP087685.1 Protein Homology CDS 1345664 1347001 . + 0 ID=cds-WP_038269659.1;Parent=gene-LPH40_RS05435;Dbxref=Genbank:WP_038269659.1;Name=WP_038269659.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084592.1;locus_tag=LPH40_RS05435;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_038269659.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1347300 1347935 . - . ID=gene-LPH40_RS05440;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=LPH40_RS05440;old_locus_tag=LPH40_05440 NZ_CP087685.1 Protein Homology CDS 1347300 1347935 . - 0 ID=cds-WP_038269657.1;Parent=gene-LPH40_RS05440;Dbxref=Genbank:WP_038269657.1;Name=WP_038269657.1;Note=Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.;Ontology_term=GO:0015937,GO:0004140,GO:0005737;gbkey=CDS;gene=coaE;go_component=cytoplasm|0005737||IEA;go_function=dephospho-CoA kinase activity|0004140||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019398553.1;locus_tag=LPH40_RS05440;product=dephospho-CoA kinase;protein_id=WP_038269657.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1347947 1348810 . - . ID=gene-LPH40_RS05445;Name=LPH40_RS05445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05445;old_locus_tag=LPH40_05445 NZ_CP087685.1 Protein Homology CDS 1347947 1348810 . - 0 ID=cds-WP_038269655.1;Parent=gene-LPH40_RS05445;Dbxref=Genbank:WP_038269655.1;Name=WP_038269655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660173.1;locus_tag=LPH40_RS05445;product=A24 family peptidase;protein_id=WP_038269655.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1348817 1350019 . - . ID=gene-LPH40_RS05450;Name=LPH40_RS05450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05450;old_locus_tag=LPH40_05450 NZ_CP087685.1 Protein Homology CDS 1348817 1350019 . - 0 ID=cds-WP_114867231.1;Parent=gene-LPH40_RS05450;Dbxref=Genbank:WP_114867231.1;Name=WP_114867231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894959.1;locus_tag=LPH40_RS05450;product=type II secretion system F family protein;protein_id=WP_114867231.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1350460 1350915 . + . ID=gene-LPH40_RS05455;Name=LPH40_RS05455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05455;old_locus_tag=LPH40_05455 NZ_CP087685.1 Protein Homology CDS 1350460 1350915 . + 0 ID=cds-WP_038269653.1;Parent=gene-LPH40_RS05455;Dbxref=Genbank:WP_038269653.1;Name=WP_038269653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084597.1;locus_tag=LPH40_RS05455;product=pilin;protein_id=WP_038269653.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1353012 1353218 . - . ID=gene-LPH40_RS05460;Name=LPH40_RS05460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05460;old_locus_tag=LPH40_05460 NZ_CP087685.1 GeneMarkS-2+ CDS 1353012 1353218 . - 0 ID=cds-WP_152536555.1;Parent=gene-LPH40_RS05460;Dbxref=Genbank:WP_152536555.1;Name=WP_152536555.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05460;product=hypothetical protein;protein_id=WP_152536555.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1353615 1354157 . + . ID=gene-LPH40_RS05465;Name=LPH40_RS05465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05465;old_locus_tag=LPH40_05465 NZ_CP087685.1 Protein Homology CDS 1353615 1354157 . + 0 ID=cds-WP_038269649.1;Parent=gene-LPH40_RS05465;Dbxref=Genbank:WP_038269649.1;Name=WP_038269649.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337723.1;locus_tag=LPH40_RS05465;product=pilin;protein_id=WP_038269649.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1354361 1354837 . + . ID=gene-LPH40_RS05470;Name=LPH40_RS05470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05470;old_locus_tag=LPH40_05470 NZ_CP087685.1 Protein Homology CDS 1354361 1354837 . + 0 ID=cds-WP_038269647.1;Parent=gene-LPH40_RS05470;Dbxref=Genbank:WP_038269647.1;Name=WP_038269647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851240.1;locus_tag=LPH40_RS05470;product=pilin;protein_id=WP_038269647.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1355219 1355584 . + . ID=gene-LPH40_RS05475;Name=LPH40_RS05475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05475;old_locus_tag=LPH40_05475 NZ_CP087685.1 GeneMarkS-2+ CDS 1355219 1355584 . + 0 ID=cds-WP_038269645.1;Parent=gene-LPH40_RS05475;Dbxref=Genbank:WP_038269645.1;Name=WP_038269645.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05475;product=hypothetical protein;protein_id=WP_038269645.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1355700 1357433 . + . ID=gene-LPH40_RS05480;Name=pilB;gbkey=Gene;gene=pilB;gene_biotype=protein_coding;locus_tag=LPH40_RS05480;old_locus_tag=LPH40_05480 NZ_CP087685.1 Protein Homology CDS 1355700 1357433 . + 0 ID=cds-WP_038269643.1;Parent=gene-LPH40_RS05480;Dbxref=Genbank:WP_038269643.1;Name=WP_038269643.1;Ontology_term=GO:0009297,GO:0016887;gbkey=CDS;gene=pilB;go_function=ATP hydrolysis activity|0016887||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851241.1;locus_tag=LPH40_RS05480;product=type IV-A pilus assembly ATPase PilB;protein_id=WP_038269643.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1357525 1358937 . - . ID=gene-LPH40_RS05485;Name=LPH40_RS05485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05485;old_locus_tag=LPH40_05485 NZ_CP087685.1 Protein Homology CDS 1357525 1358937 . - 0 ID=cds-WP_038269641.1;Parent=gene-LPH40_RS05485;Dbxref=Genbank:WP_038269641.1;Name=WP_038269641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437607.1;locus_tag=LPH40_RS05485;product=sigma-54 dependent transcriptional regulator;protein_id=WP_038269641.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1359106 1360716 . - . ID=gene-LPH40_RS05490;Name=LPH40_RS05490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05490;old_locus_tag=LPH40_05490 NZ_CP087685.1 Protein Homology CDS 1359106 1360716 . - 0 ID=cds-WP_038269639.1;Parent=gene-LPH40_RS05490;Dbxref=Genbank:WP_038269639.1;Name=WP_038269639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348336.1;locus_tag=LPH40_RS05490;product=ATP-binding protein;protein_id=WP_038269639.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1360972 1362135 . + . ID=gene-LPH40_RS05495;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=LPH40_RS05495;old_locus_tag=LPH40_05495 NZ_CP087685.1 Protein Homology CDS 1360972 1362135 . + 0 ID=cds-WP_038269637.1;Parent=gene-LPH40_RS05495;Dbxref=Genbank:WP_038269637.1;Name=WP_038269637.1;Ontology_term=GO:0006099,GO:0003824,GO:0005524,GO:0046872;gbkey=CDS;gene=sucC;go_function=catalytic activity|0003824||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894968.1;locus_tag=LPH40_RS05495;product=ADP-forming succinate--CoA ligase subunit beta;protein_id=WP_038269637.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1362164 1363036 . + . ID=gene-LPH40_RS05500;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=LPH40_RS05500;old_locus_tag=LPH40_05500 NZ_CP087685.1 Protein Homology CDS 1362164 1363036 . + 0 ID=cds-WP_038269635.1;Parent=gene-LPH40_RS05500;Dbxref=Genbank:WP_038269635.1;Name=WP_038269635.1;Ontology_term=GO:0003824;gbkey=CDS;gene=sucD;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812253.1;locus_tag=LPH40_RS05500;product=succinate--CoA ligase subunit alpha;protein_id=WP_038269635.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1363296 1364648 . - . ID=gene-LPH40_RS05505;Name=mnmE;gbkey=Gene;gene=mnmE;gene_biotype=protein_coding;locus_tag=LPH40_RS05505;old_locus_tag=LPH40_05505 NZ_CP087685.1 Protein Homology CDS 1363296 1364648 . - 0 ID=cds-WP_038269633.1;Parent=gene-LPH40_RS05505;Dbxref=Genbank:WP_038269633.1;Name=WP_038269633.1;Ontology_term=GO:0006400,GO:0003924,GO:0005515,GO:0005525;gbkey=CDS;gene=mnmE;go_function=GTPase activity|0003924||IEA,protein binding|0005515||IEA,GTP binding|0005525||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039299.1;locus_tag=LPH40_RS05505;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE;protein_id=WP_038269633.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1364645 1367359 . - . ID=gene-LPH40_RS05510;Name=LPH40_RS05510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05510;old_locus_tag=LPH40_05510 NZ_CP087685.1 Protein Homology CDS 1364645 1367359 . - 0 ID=cds-WP_038269631.1;Parent=gene-LPH40_RS05510;Dbxref=Genbank:WP_038269631.1;Name=WP_038269631.1;Ontology_term=GO:0005975,GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085096.1;locus_tag=LPH40_RS05510;product=polysaccharide deacetylase family protein;protein_id=WP_038269631.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1367448 1369139 . - . ID=gene-LPH40_RS05515;Name=yidC;gbkey=Gene;gene=yidC;gene_biotype=protein_coding;locus_tag=LPH40_RS05515;old_locus_tag=LPH40_05515 NZ_CP087685.1 Protein Homology CDS 1367448 1369139 . - 0 ID=cds-WP_038269630.1;Parent=gene-LPH40_RS05515;Dbxref=Genbank:WP_038269630.1;Name=WP_038269630.1;Ontology_term=GO:0032977,GO:0016020;gbkey=CDS;gene=yidC;go_component=membrane|0016020||IEA;go_function=membrane insertase activity|0032977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087831.1;locus_tag=LPH40_RS05515;product=membrane protein insertase YidC;protein_id=WP_038269630.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1369183 1369641 . - . ID=gene-LPH40_RS05520;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=LPH40_RS05520;old_locus_tag=LPH40_05520 NZ_CP087685.1 Protein Homology CDS 1369183 1369641 . - 0 ID=cds-WP_081755381.1;Parent=gene-LPH40_RS05520;Dbxref=Genbank:WP_081755381.1;Name=WP_081755381.1;Ontology_term=GO:0006396,GO:0004526;gbkey=CDS;gene=rnpA;go_function=ribonuclease P activity|0004526||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: protein motif:HMM:NF013022.2;locus_tag=LPH40_RS05520;product=ribonuclease P protein component;protein_id=WP_081755381.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1369649 1369789 . - . ID=gene-LPH40_RS05525;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=LPH40_RS05525;old_locus_tag=LPH40_05525 NZ_CP087685.1 Protein Homology CDS 1369649 1369789 . - 0 ID=cds-WP_038269628.1;Parent=gene-LPH40_RS05525;Dbxref=Genbank:WP_038269628.1;Name=WP_038269628.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmH;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006404565.1;locus_tag=LPH40_RS05525;product=50S ribosomal protein L34;protein_id=WP_038269628.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1370012 1371325 . + . ID=gene-LPH40_RS05530;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=LPH40_RS05530;old_locus_tag=LPH40_05530 NZ_CP087685.1 Protein Homology CDS 1370012 1371325 . + 0 ID=cds-WP_038269883.1;Parent=gene-LPH40_RS05530;Dbxref=Genbank:WP_038269883.1;Name=WP_038269883.1;Ontology_term=GO:0006270,GO:0006275,GO:0003677,GO:0003688,GO:0005524;gbkey=CDS;gene=dnaA;go_function=DNA binding|0003677||IEA,DNA replication origin binding|0003688||IEA,ATP binding|0005524||IEA;go_process=DNA replication initiation|0006270||IEA,regulation of DNA replication|0006275||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050021.1;locus_tag=LPH40_RS05530;product=chromosomal replication initiator protein DnaA;protein_id=WP_038269883.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1371597 1372706 . + . ID=gene-LPH40_RS05535;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=LPH40_RS05535;old_locus_tag=LPH40_05535 NZ_CP087685.1 Protein Homology CDS 1371597 1372706 . + 0 ID=cds-WP_038269626.1;Parent=gene-LPH40_RS05535;Dbxref=Genbank:WP_038269626.1;Name=WP_038269626.1;Ontology_term=GO:0006260,GO:0003887,GO:0009360;gbkey=CDS;gene=dnaN;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451791.1;locus_tag=LPH40_RS05535;product=DNA polymerase III subunit beta;protein_id=WP_038269626.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1373391 1374485 . + . ID=gene-LPH40_RS05540;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=LPH40_RS05540;old_locus_tag=LPH40_05540 NZ_CP087685.1 Protein Homology CDS 1373391 1374485 . + 0 ID=cds-WP_038269623.1;Parent=gene-LPH40_RS05540;Dbxref=Genbank:WP_038269623.1;Name=WP_038269623.1;Ontology_term=GO:0006281,GO:0003697,GO:0005524;gbkey=CDS;gene=recF;go_function=single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087835.1;locus_tag=LPH40_RS05540;product=DNA replication/repair protein RecF;protein_id=WP_038269623.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1375052 1377496 . + . ID=gene-LPH40_RS05545;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=LPH40_RS05545;old_locus_tag=LPH40_05545 NZ_CP087685.1 Protein Homology CDS 1375052 1377496 . + 0 ID=cds-WP_038269621.1;Parent=gene-LPH40_RS05545;Dbxref=Genbank:WP_038269621.1;Name=WP_038269621.1;Ontology_term=GO:0006265,GO:0003918,GO:0009330;gbkey=CDS;gene=gyrB;go_component=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) complex|0009330||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912438.1;locus_tag=LPH40_RS05545;product=DNA topoisomerase (ATP-hydrolyzing) subunit B;protein_id=WP_038269621.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1377545 1378375 . + . ID=gene-LPH40_RS05550;Name=LPH40_RS05550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05550;old_locus_tag=LPH40_05550 NZ_CP087685.1 Protein Homology CDS 1377545 1378375 . + 0 ID=cds-WP_081755380.1;Parent=gene-LPH40_RS05550;Dbxref=Genbank:WP_081755380.1;Name=WP_081755380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087837.1;locus_tag=LPH40_RS05550;product=CPBP family intramembrane metalloprotease;protein_id=WP_081755380.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1378438 1379253 . + . ID=gene-LPH40_RS05555;Name=LPH40_RS05555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05555;old_locus_tag=LPH40_05555 NZ_CP087685.1 Protein Homology CDS 1378438 1379253 . + 0 ID=cds-WP_038269619.1;Parent=gene-LPH40_RS05555;Dbxref=Genbank:WP_038269619.1;Name=WP_038269619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087838.1;locus_tag=LPH40_RS05555;product=M48 family metallopeptidase;protein_id=WP_038269619.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1379339 1380529 . + . ID=gene-LPH40_RS05560;Name=LPH40_RS05560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05560;old_locus_tag=LPH40_05560 NZ_CP087685.1 Protein Homology CDS 1379339 1380529 . + 0 ID=cds-WP_038269617.1;Parent=gene-LPH40_RS05560;Dbxref=Genbank:WP_038269617.1;Name=WP_038269617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376399.1;locus_tag=LPH40_RS05560;product=tetratricopeptide repeat protein;protein_id=WP_038269617.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1381090 1381752 . + . ID=gene-LPH40_RS05565;Name=LPH40_RS05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05565;old_locus_tag=LPH40_05565 NZ_CP087685.1 Protein Homology CDS 1381090 1381752 . + 0 ID=cds-WP_230430686.1;Parent=gene-LPH40_RS05565;Dbxref=Genbank:WP_230430686.1;Name=WP_230430686.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337543.1;locus_tag=LPH40_RS05565;product=energy transducer TonB;protein_id=WP_230430686.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1381829 1382593 . + . ID=gene-LPH40_RS05570;Name=exbB;gbkey=Gene;gene=exbB;gene_biotype=protein_coding;locus_tag=LPH40_RS05570;old_locus_tag=LPH40_05570 NZ_CP087685.1 Protein Homology CDS 1381829 1382593 . + 0 ID=cds-WP_038269615.1;Parent=gene-LPH40_RS05570;Dbxref=Genbank:WP_038269615.1;Name=WP_038269615.1;gbkey=CDS;gene=exbB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002805928.1;locus_tag=LPH40_RS05570;product=TonB-system energizer ExbB;protein_id=WP_038269615.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1382647 1383069 . + . ID=gene-LPH40_RS05575;Name=LPH40_RS05575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05575;old_locus_tag=LPH40_05575 NZ_CP087685.1 Protein Homology CDS 1382647 1383069 . + 0 ID=cds-WP_038269613.1;Parent=gene-LPH40_RS05575;Dbxref=Genbank:WP_038269613.1;Name=WP_038269613.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912447.1;locus_tag=LPH40_RS05575;product=biopolymer transporter ExbD;protein_id=WP_038269613.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1383073 1383492 . + . ID=gene-LPH40_RS05580;Name=LPH40_RS05580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05580;old_locus_tag=LPH40_05580 NZ_CP087685.1 Protein Homology CDS 1383073 1383492 . + 0 ID=cds-WP_038269611.1;Parent=gene-LPH40_RS05580;Dbxref=Genbank:WP_038269611.1;Name=WP_038269611.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155972.1;locus_tag=LPH40_RS05580;product=biopolymer transporter ExbD;protein_id=WP_038269611.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1383891 1384121 . + . ID=gene-LPH40_RS05585;Name=LPH40_RS05585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05585;old_locus_tag=LPH40_05585 NZ_CP087685.1 GeneMarkS-2+ CDS 1383891 1384121 . + 0 ID=cds-WP_038269609.1;Parent=gene-LPH40_RS05585;Dbxref=Genbank:WP_038269609.1;Name=WP_038269609.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05585;product=hypothetical protein;protein_id=WP_038269609.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1384465 1386837 . + . ID=gene-LPH40_RS05590;Name=LPH40_RS05590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05590;old_locus_tag=LPH40_05590 NZ_CP087685.1 Protein Homology CDS 1384465 1386837 . + 0 ID=cds-WP_038269608.1;Parent=gene-LPH40_RS05590;Dbxref=Genbank:WP_038269608.1;Name=WP_038269608.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451941.1;locus_tag=LPH40_RS05590;product=S9 family peptidase;protein_id=WP_038269608.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1386893 1387435 . + . ID=gene-LPH40_RS05595;Name=LPH40_RS05595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05595;old_locus_tag=LPH40_05595 NZ_CP087685.1 Protein Homology CDS 1386893 1387435 . + 0 ID=cds-WP_038269606.1;Parent=gene-LPH40_RS05595;Dbxref=Genbank:WP_038269606.1;Name=WP_038269606.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851940.1;locus_tag=LPH40_RS05595;product=hypothetical protein;protein_id=WP_038269606.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1387661 1388575 . + . ID=gene-LPH40_RS05600;Name=hemF;gbkey=Gene;gene=hemF;gene_biotype=protein_coding;locus_tag=LPH40_RS05600;old_locus_tag=LPH40_05600 NZ_CP087685.1 Protein Homology CDS 1387661 1388575 . + 0 ID=cds-WP_038269604.1;Parent=gene-LPH40_RS05600;Dbxref=Genbank:WP_038269604.1;Name=WP_038269604.1;Ontology_term=GO:0006779,GO:0004109;gbkey=CDS;gene=hemF;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085079.1;locus_tag=LPH40_RS05600;product=oxygen-dependent coproporphyrinogen oxidase;protein_id=WP_038269604.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1389776 1389943 . + . ID=gene-LPH40_RS05605;Name=LPH40_RS05605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05605;old_locus_tag=LPH40_05605 NZ_CP087685.1 GeneMarkS-2+ CDS 1389776 1389943 . + 0 ID=cds-WP_160165102.1;Parent=gene-LPH40_RS05605;Dbxref=Genbank:WP_160165102.1;Name=WP_160165102.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05605;product=hypothetical protein;protein_id=WP_160165102.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1390037 1390327 . + . ID=gene-LPH40_RS05610;Name=LPH40_RS05610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05610;old_locus_tag=LPH40_05610 NZ_CP087685.1 GeneMarkS-2+ CDS 1390037 1390327 . + 0 ID=cds-WP_038269602.1;Parent=gene-LPH40_RS05610;Dbxref=Genbank:WP_038269602.1;Name=WP_038269602.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05610;product=hypothetical protein;protein_id=WP_038269602.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1390592 1390924 . - . ID=gene-LPH40_RS05615;Name=LPH40_RS05615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05615;old_locus_tag=LPH40_05615 NZ_CP087685.1 GeneMarkS-2+ CDS 1390592 1390924 . - 0 ID=cds-WP_038269601.1;Parent=gene-LPH40_RS05615;Dbxref=Genbank:WP_038269601.1;Name=WP_038269601.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05615;product=hypothetical protein;protein_id=WP_038269601.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1392058 1392134 . - . ID=gene-LPH40_RS05620;Name=LPH40_RS05620;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS05620;old_locus_tag=LPH40_05620 NZ_CP087685.1 tRNAscan-SE tRNA 1392058 1392134 . - . ID=rna-LPH40_RS05620;Parent=gene-LPH40_RS05620;anticodon=(pos:complement(1392098..1392100));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05620;product=tRNA-Ile NZ_CP087685.1 tRNAscan-SE exon 1392058 1392134 . - . ID=exon-LPH40_RS05620-1;Parent=rna-LPH40_RS05620;anticodon=(pos:complement(1392098..1392100));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05620;product=tRNA-Ile NZ_CP087685.1 RefSeq gene 1392991 1394094 . - . ID=gene-LPH40_RS05625;Name=LPH40_RS05625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05625;old_locus_tag=LPH40_05625 NZ_CP087685.1 Protein Homology CDS 1392991 1394094 . - 0 ID=cds-WP_038269598.1;Parent=gene-LPH40_RS05625;Dbxref=Genbank:WP_038269598.1;Name=WP_038269598.1;Ontology_term=GO:0009423,GO:0003849;gbkey=CDS;go_function=3-deoxy-7-phosphoheptulonate synthase activity|0003849||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892575.1;locus_tag=LPH40_RS05625;product=3-deoxy-7-phosphoheptulonate synthase;protein_id=WP_038269598.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1394201 1394329 . - . ID=gene-LPH40_RS11995;Name=LPH40_RS11995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11995 NZ_CP087685.1 GeneMarkS-2+ CDS 1394201 1394329 . - 0 ID=cds-WP_267903164.1;Parent=gene-LPH40_RS11995;Dbxref=Genbank:WP_267903164.1;Name=WP_267903164.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11995;product=hypothetical protein;protein_id=WP_267903164.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1396089 1396652 . + . ID=gene-LPH40_RS05630;Name=LPH40_RS05630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05630;old_locus_tag=LPH40_05630 NZ_CP087685.1 Protein Homology CDS 1396089 1396652 . + 0 ID=cds-WP_038269594.1;Parent=gene-LPH40_RS05630;Dbxref=Genbank:WP_038269594.1;Name=WP_038269594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087851.1;locus_tag=LPH40_RS05630;product=Tfp pilus assembly protein FimT/FimU;protein_id=WP_038269594.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1396662 1397138 . + . ID=gene-LPH40_RS05635;Name=pilV;gbkey=Gene;gene=pilV;gene_biotype=protein_coding;locus_tag=LPH40_RS05635;old_locus_tag=LPH40_05635 NZ_CP087685.1 Protein Homology CDS 1396662 1397138 . + 0 ID=cds-WP_038269593.1;Parent=gene-LPH40_RS05635;Dbxref=Genbank:WP_038269593.1;Name=WP_038269593.1;gbkey=CDS;gene=pilV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087852.1;locus_tag=LPH40_RS05635;product=type IV pilus modification protein PilV;protein_id=WP_038269593.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1397135 1398091 . + . ID=gene-LPH40_RS05640;Name=LPH40_RS05640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05640;old_locus_tag=LPH40_05640 NZ_CP087685.1 Protein Homology CDS 1397135 1398091 . + 0 ID=cds-WP_038269591.1;Parent=gene-LPH40_RS05640;Dbxref=Genbank:WP_038269591.1;Name=WP_038269591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085075.1;locus_tag=LPH40_RS05640;product=PilW family protein;protein_id=WP_038269591.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1398088 1398675 . + . ID=gene-LPH40_RS05645;Name=LPH40_RS05645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05645;old_locus_tag=LPH40_05645 NZ_CP087685.1 Protein Homology CDS 1398088 1398675 . + 0 ID=cds-WP_038269588.1;Parent=gene-LPH40_RS05645;Dbxref=Genbank:WP_038269588.1;Name=WP_038269588.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085074.1;locus_tag=LPH40_RS05645;product=pilus assembly protein;protein_id=WP_038269588.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1398701 1402381 . + . ID=gene-LPH40_RS05650;Name=LPH40_RS05650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05650;old_locus_tag=LPH40_05650 NZ_CP087685.1 Protein Homology CDS 1398701 1402381 . + 0 ID=cds-WP_114867048.1;Parent=gene-LPH40_RS05650;Dbxref=Genbank:WP_114867048.1;Name=WP_114867048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097477.1;locus_tag=LPH40_RS05650;product=pilus assembly protein;protein_id=WP_114867048.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1402408 1402806 . + . ID=gene-LPH40_RS05655;Name=LPH40_RS05655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05655;old_locus_tag=LPH40_05655 NZ_CP087685.1 Protein Homology CDS 1402408 1402806 . + 0 ID=cds-WP_230428264.1;Parent=gene-LPH40_RS05655;Dbxref=Genbank:WP_230428264.1;Name=WP_230428264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097478.1;locus_tag=LPH40_RS05655;product=type IV pilin protein;protein_id=WP_230428264.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1403251 1403982 . - . ID=gene-LPH40_RS05660;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=LPH40_RS05660;old_locus_tag=LPH40_05660 NZ_CP087685.1 Protein Homology CDS 1403251 1403982 . - 0 ID=cds-WP_038272273.1;Parent=gene-LPH40_RS05660;Dbxref=Genbank:WP_038272273.1;Name=WP_038272273.1;Ontology_term=GO:0006207,GO:0044205,GO:0004590;gbkey=CDS;gene=pyrF;go_function=orotidine-5'-phosphate decarboxylase activity|0004590||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,'de novo' UMP biosynthetic process|0044205||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155183.1;locus_tag=LPH40_RS05660;product=orotidine-5'-phosphate decarboxylase;protein_id=WP_038272273.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1405382 1406584 . + . ID=gene-LPH40_RS05665;Name=LPH40_RS05665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05665;old_locus_tag=LPH40_05665 NZ_CP087685.1 Protein Homology CDS 1405382 1406584 . + 0 ID=cds-WP_038272274.1;Parent=gene-LPH40_RS05665;Dbxref=Genbank:WP_038272274.1;Name=WP_038272274.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851929.1;locus_tag=LPH40_RS05665;product=aspartate/tyrosine/aromatic aminotransferase;protein_id=WP_038272274.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1407139 1407543 . - . ID=gene-LPH40_RS05670;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=LPH40_RS05670;old_locus_tag=LPH40_05670 NZ_CP087685.1 Protein Homology CDS 1407139 1407543 . - 0 ID=cds-WP_038272276.1;Parent=gene-LPH40_RS05670;Dbxref=Genbank:WP_038272276.1;Name=WP_038272276.1;Ontology_term=GO:0034220,GO:0008381;gbkey=CDS;gene=mscL;go_function=mechanosensitive ion channel activity|0008381||IEA;go_process=ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085069.1;locus_tag=LPH40_RS05670;product=large-conductance mechanosensitive channel protein MscL;protein_id=WP_038272276.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1407686 1407841 . - . ID=gene-LPH40_RS05675;Name=LPH40_RS05675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05675;old_locus_tag=LPH40_05675 NZ_CP087685.1 GeneMarkS-2+ CDS 1407686 1407841 . - 0 ID=cds-WP_160165212.1;Parent=gene-LPH40_RS05675;Dbxref=Genbank:WP_160165212.1;Name=WP_160165212.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05675;product=hypothetical protein;protein_id=WP_160165212.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1408809 1409027 . + . ID=gene-LPH40_RS05680;Name=LPH40_RS05680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05680;old_locus_tag=LPH40_05680 NZ_CP087685.1 GeneMarkS-2+ CDS 1408809 1409027 . + 0 ID=cds-WP_152536650.1;Parent=gene-LPH40_RS05680;Dbxref=Genbank:WP_152536650.1;Name=WP_152536650.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05680;product=hypothetical protein;protein_id=WP_152536650.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1409572 1409715 . + . ID=gene-LPH40_RS05685;Name=LPH40_RS05685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05685;old_locus_tag=LPH40_05685 NZ_CP087685.1 GeneMarkS-2+ CDS 1409572 1409715 . + 0 ID=cds-WP_160165214.1;Parent=gene-LPH40_RS05685;Dbxref=Genbank:WP_160165214.1;Name=WP_160165214.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05685;product=hypothetical protein;protein_id=WP_160165214.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1409788 1411047 . + . ID=gene-LPH40_RS05690;Name=LPH40_RS05690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05690;old_locus_tag=LPH40_05690 NZ_CP087685.1 Protein Homology CDS 1409788 1411047 . + 0 ID=cds-WP_038272277.1;Parent=gene-LPH40_RS05690;Dbxref=Genbank:WP_038272277.1;Name=WP_038272277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851927.1;locus_tag=LPH40_RS05690;product=putative Na+/H+ antiporter;protein_id=WP_038272277.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1411659 1412540 . + . ID=gene-LPH40_RS05695;Name=rlmJ;gbkey=Gene;gene=rlmJ;gene_biotype=protein_coding;locus_tag=LPH40_RS05695;old_locus_tag=LPH40_05695 NZ_CP087685.1 Protein Homology CDS 1411659 1412540 . + 0 ID=cds-WP_038272279.1;Parent=gene-LPH40_RS05695;Dbxref=Genbank:WP_038272279.1;Name=WP_038272279.1;Ontology_term=GO:0070475,GO:0008649;gbkey=CDS;gene=rlmJ;go_function=rRNA methyltransferase activity|0008649||IEA;go_process=rRNA base methylation|0070475||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851926.1;locus_tag=LPH40_RS05695;product=23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ;protein_id=WP_038272279.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1413282 1413821 . + . ID=gene-LPH40_RS05700;Name=LPH40_RS05700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05700;old_locus_tag=LPH40_05700 NZ_CP087685.1 Protein Homology CDS 1413282 1413821 . + 0 ID=cds-WP_038272316.1;Parent=gene-LPH40_RS05700;Dbxref=Genbank:WP_038272316.1;Name=WP_038272316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892593.1;locus_tag=LPH40_RS05700;product=GNAT family N-acetyltransferase;protein_id=WP_038272316.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1413888 1417472 . + . ID=gene-LPH40_RS05705;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=LPH40_RS05705;old_locus_tag=LPH40_05705 NZ_CP087685.1 Protein Homology CDS 1413888 1417472 . + 0 ID=cds-WP_038272281.1;Parent=gene-LPH40_RS05705;Dbxref=Genbank:WP_038272281.1;Name=WP_038272281.1;Ontology_term=GO:0006281,GO:0003690,GO:0005515,GO:0005524,GO:0016887;gbkey=CDS;gene=mfd;go_function=double-stranded DNA binding|0003690||IEA,protein binding|0005515||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802759.1;locus_tag=LPH40_RS05705;product=transcription-repair coupling factor;protein_id=WP_038272281.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1418297 1418743 . + . ID=gene-LPH40_RS05710;Name=aroQ;gbkey=Gene;gene=aroQ;gene_biotype=protein_coding;locus_tag=LPH40_RS05710;old_locus_tag=LPH40_05710 NZ_CP087685.1 Protein Homology CDS 1418297 1418743 . + 0 ID=cds-WP_038272284.1;Parent=gene-LPH40_RS05710;Dbxref=Genbank:WP_038272284.1;Name=WP_038272284.1;Ontology_term=GO:0009423,GO:0003855;gbkey=CDS;gene=aroQ;go_function=3-dehydroquinate dehydratase activity|0003855||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087115.1;locus_tag=LPH40_RS05710;product=type II 3-dehydroquinate dehydratase;protein_id=WP_038272284.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1418794 1419279 . + . ID=gene-LPH40_RS05715;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;locus_tag=LPH40_RS05715;old_locus_tag=LPH40_05715 NZ_CP087685.1 Protein Homology CDS 1418794 1419279 . + 0 ID=cds-WP_038272286.1;Parent=gene-LPH40_RS05715;Dbxref=Genbank:WP_038272286.1;Name=WP_038272286.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accB;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087117.1;locus_tag=LPH40_RS05715;product=acetyl-CoA carboxylase biotin carboxyl carrier protein;protein_id=WP_038272286.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1419337 1420704 . + . ID=gene-LPH40_RS05720;Name=accC;gbkey=Gene;gene=accC;gene_biotype=protein_coding;locus_tag=LPH40_RS05720;old_locus_tag=LPH40_05720 NZ_CP087685.1 Protein Homology CDS 1419337 1420704 . + 0 ID=cds-WP_038272288.1;Parent=gene-LPH40_RS05720;Dbxref=Genbank:WP_038272288.1;Name=WP_038272288.1;Ontology_term=GO:0006633,GO:0003989,GO:0004075,GO:0009317;gbkey=CDS;gene=accC;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA,biotin carboxylase activity|0004075||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660825.1;locus_tag=LPH40_RS05720;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_038272288.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1421235 1423421 . - . ID=gene-LPH40_RS05725;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;locus_tag=LPH40_RS05725;old_locus_tag=LPH40_05725 NZ_CP087685.1 Protein Homology CDS 1421235 1423421 . - 0 ID=cds-WP_038272290.1;Parent=gene-LPH40_RS05725;Dbxref=Genbank:WP_038272290.1;Name=WP_038272290.1;Ontology_term=GO:0006281,GO:0003678;gbkey=CDS;gene=uvrD;go_function=DNA helicase activity|0003678||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809467.1;locus_tag=LPH40_RS05725;product=DNA helicase II;protein_id=WP_038272290.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1423860 1424201 . - . ID=gene-LPH40_RS05730;Name=LPH40_RS05730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05730;old_locus_tag=LPH40_05730 NZ_CP087685.1 GeneMarkS-2+ CDS 1423860 1424201 . - 0 ID=cds-WP_152536651.1;Parent=gene-LPH40_RS05730;Dbxref=Genbank:WP_152536651.1;Name=WP_152536651.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05730;product=hypothetical protein;protein_id=WP_152536651.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1424291 1425484 . + . ID=gene-LPH40_RS05735;Name=hmpA;gbkey=Gene;gene=hmpA;gene_biotype=protein_coding;locus_tag=LPH40_RS05735;old_locus_tag=LPH40_05735 NZ_CP087685.1 Protein Homology CDS 1424291 1425484 . + 0 ID=cds-WP_038272293.1;Parent=gene-LPH40_RS05735;Dbxref=Genbank:WP_038272293.1;Name=WP_038272293.1;Ontology_term=GO:0051409,GO:0008941,GO:0019825,GO:0020037,GO:0071949;gbkey=CDS;gene=hmpA;go_function=nitric oxide dioxygenase activity|0008941||IEA,oxygen binding|0019825||IEA,heme binding|0020037||IEA,FAD binding|0071949||IEA;go_process=response to nitrosative stress|0051409||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851920.1;locus_tag=LPH40_RS05735;product=NO-inducible flavohemoprotein;protein_id=WP_038272293.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1427797 1428075 . + . ID=gene-LPH40_RS05740;Name=LPH40_RS05740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05740;old_locus_tag=LPH40_05740 NZ_CP087685.1 Protein Homology CDS 1427797 1428075 . + 0 ID=cds-WP_038272319.1;Parent=gene-LPH40_RS05740;Dbxref=Genbank:WP_038272319.1;Name=WP_038272319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852838.1;locus_tag=LPH40_RS05740;product=DUF2244 domain-containing protein;protein_id=WP_038272319.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1428072 1428854 . + . ID=gene-LPH40_RS05745;Name=LPH40_RS05745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05745;old_locus_tag=LPH40_05745 NZ_CP087685.1 Protein Homology CDS 1428072 1428854 . + 0 ID=cds-WP_038272298.1;Parent=gene-LPH40_RS05745;Dbxref=Genbank:WP_038272298.1;Name=WP_038272298.1;Ontology_term=GO:0008615,GO:0033856;gbkey=CDS;go_function=pyridoxine 5'-phosphate synthase activity|0033856||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085059.1;locus_tag=LPH40_RS05745;product=pyridoxine 5'-phosphate synthase;protein_id=WP_038272298.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1429477 1429650 . - . ID=gene-LPH40_RS05750;Name=LPH40_RS05750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05750;old_locus_tag=LPH40_05750 NZ_CP087685.1 GeneMarkS-2+ CDS 1429477 1429650 . - 0 ID=cds-WP_216651941.1;Parent=gene-LPH40_RS05750;Dbxref=Genbank:WP_216651941.1;Name=WP_216651941.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05750;product=hypothetical protein;protein_id=WP_216651941.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1430328 1431371 . - . ID=gene-LPH40_RS05755;Name=LPH40_RS05755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05755;old_locus_tag=LPH40_05755 NZ_CP087685.1 Protein Homology CDS 1430328 1431371 . - 0 ID=cds-WP_038272299.1;Parent=gene-LPH40_RS05755;Dbxref=Genbank:WP_038272299.1;Name=WP_038272299.1;Ontology_term=GO:0000910,GO:0007059,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cytokinesis|0000910||IEA,chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087145.1;locus_tag=LPH40_RS05755;product=ParB/RepB/Spo0J family partition protein;protein_id=WP_038272299.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1433060 1433221 . - . ID=gene-LPH40_RS05760;Name=LPH40_RS05760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05760;old_locus_tag=LPH40_05760 NZ_CP087685.1 GeneMarkS-2+ CDS 1433060 1433221 . - 0 ID=cds-WP_160165215.1;Parent=gene-LPH40_RS05760;Dbxref=Genbank:WP_160165215.1;Name=WP_160165215.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05760;product=hypothetical protein;protein_id=WP_160165215.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1433590 1434306 . - . ID=gene-LPH40_RS05765;Name=LPH40_RS05765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05765;old_locus_tag=LPH40_05765 NZ_CP087685.1 Protein Homology CDS 1433590 1434306 . - 0 ID=cds-WP_038272305.1;Parent=gene-LPH40_RS05765;Dbxref=Genbank:WP_038272305.1;Name=WP_038272305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852835.1;locus_tag=LPH40_RS05765;product=ComF family protein;protein_id=WP_038272305.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1434356 1435381 . + . ID=gene-LPH40_RS05770;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=LPH40_RS05770;old_locus_tag=LPH40_05770 NZ_CP087685.1 Protein Homology CDS 1434356 1435381 . + 0 ID=cds-WP_038272321.1;Parent=gene-LPH40_RS05770;Dbxref=Genbank:WP_038272321.1;Name=WP_038272321.1;Ontology_term=GO:0009102,GO:0004076,GO:0051537,GO:0051539,GO:1904047;gbkey=CDS;gene=bioB;go_function=biotin synthase activity|0004076||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892613.1;locus_tag=LPH40_RS05770;product=biotin synthase BioB;protein_id=WP_038272321.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1435768 1436805 . + . ID=gene-LPH40_RS05775;Name=LPH40_RS05775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05775;old_locus_tag=LPH40_05775 NZ_CP087685.1 Protein Homology CDS 1435768 1436805 . + 0 ID=cds-WP_038272307.1;Parent=gene-LPH40_RS05775;Dbxref=Genbank:WP_038272307.1;Name=WP_038272307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085056.1;locus_tag=LPH40_RS05775;product=patatin-like phospholipase family protein;protein_id=WP_038272307.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1437824 1438723 . - . ID=gene-LPH40_RS05780;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=LPH40_RS05780;old_locus_tag=LPH40_05780 NZ_CP087685.1 Protein Homology CDS 1437824 1438723 . - 0 ID=cds-WP_038272309.1;Parent=gene-LPH40_RS05780;Dbxref=Genbank:WP_038272309.1;Name=WP_038272309.1;Ontology_term=GO:0006744,GO:0008412;gbkey=CDS;gene=ubiA;go_function=4-hydroxybenzoate octaprenyltransferase activity|0008412||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085055.1;locus_tag=LPH40_RS05780;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_038272309.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1438830 1438906 . + . ID=gene-LPH40_RS05785;Name=LPH40_RS05785;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS05785;old_locus_tag=LPH40_05785 NZ_CP087685.1 tRNAscan-SE tRNA 1438830 1438906 . + . ID=rna-LPH40_RS05785;Parent=gene-LPH40_RS05785;anticodon=(pos:1438864..1438866);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05785;product=tRNA-Arg NZ_CP087685.1 tRNAscan-SE exon 1438830 1438906 . + . ID=exon-LPH40_RS05785-1;Parent=rna-LPH40_RS05785;anticodon=(pos:1438864..1438866);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05785;product=tRNA-Arg NZ_CP087685.1 RefSeq gene 1439797 1439970 . + . ID=gene-LPH40_RS05790;Name=LPH40_RS05790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05790;old_locus_tag=LPH40_05790 NZ_CP087685.1 GeneMarkS-2+ CDS 1439797 1439970 . + 0 ID=cds-WP_160165216.1;Parent=gene-LPH40_RS05790;Dbxref=Genbank:WP_160165216.1;Name=WP_160165216.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05790;product=hypothetical protein;protein_id=WP_160165216.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1441209 1442744 . + . ID=gene-LPH40_RS05795;Name=dacB;gbkey=Gene;gene=dacB;gene_biotype=protein_coding;locus_tag=LPH40_RS05795;old_locus_tag=LPH40_05795 NZ_CP087685.1 Protein Homology CDS 1441209 1442744 . + 0 ID=cds-WP_081755472.1;Parent=gene-LPH40_RS05795;Dbxref=Genbank:WP_081755472.1;Name=WP_081755472.1;Ontology_term=GO:0009252,GO:0004175,GO:0009002;gbkey=CDS;gene=dacB;go_function=endopeptidase activity|0004175||IEA,serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852252.1;locus_tag=LPH40_RS05795;product=D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase;protein_id=WP_081755472.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1444426 1444827 . + . ID=gene-LPH40_RS05800;Name=LPH40_RS05800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05800;old_locus_tag=LPH40_05800 NZ_CP087685.1 GeneMarkS-2+ CDS 1444426 1444827 . + 0 ID=cds-WP_152536653.1;Parent=gene-LPH40_RS05800;Dbxref=Genbank:WP_152536653.1;Name=WP_152536653.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05800;product=hypothetical protein;protein_id=WP_152536653.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1447259 1448803 . + . ID=gene-LPH40_RS05805;Name=LPH40_RS05805;gbkey=Gene;gene_biotype=rRNA;locus_tag=LPH40_RS05805;old_locus_tag=LPH40_05805 NZ_CP087685.1 cmsearch rRNA 1447259 1448803 . + . ID=rna-LPH40_RS05805;Parent=gene-LPH40_RS05805;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS05805;product=16S ribosomal RNA NZ_CP087685.1 cmsearch exon 1447259 1448803 . + . ID=exon-LPH40_RS05805-1;Parent=rna-LPH40_RS05805;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS05805;product=16S ribosomal RNA NZ_CP087685.1 RefSeq gene 1448898 1448973 . + . ID=gene-LPH40_RS05810;Name=LPH40_RS05810;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS05810;old_locus_tag=LPH40_05810 NZ_CP087685.1 tRNAscan-SE tRNA 1448898 1448973 . + . ID=rna-LPH40_RS05810;Parent=gene-LPH40_RS05810;anticodon=(pos:1448931..1448933);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05810;product=tRNA-Ala NZ_CP087685.1 tRNAscan-SE exon 1448898 1448973 . + . ID=exon-LPH40_RS05810-1;Parent=rna-LPH40_RS05810;anticodon=(pos:1448931..1448933);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05810;product=tRNA-Ala NZ_CP087685.1 RefSeq gene 1448985 1449061 . + . ID=gene-LPH40_RS05815;Name=LPH40_RS05815;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS05815;old_locus_tag=LPH40_05815 NZ_CP087685.1 tRNAscan-SE tRNA 1448985 1449061 . + . ID=rna-LPH40_RS05815;Parent=gene-LPH40_RS05815;anticodon=(pos:1449019..1449021);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05815;product=tRNA-Ile NZ_CP087685.1 tRNAscan-SE exon 1448985 1449061 . + . ID=exon-LPH40_RS05815-1;Parent=rna-LPH40_RS05815;anticodon=(pos:1449019..1449021);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS05815;product=tRNA-Ile NZ_CP087685.1 RefSeq gene 1449280 1452158 . + . ID=gene-LPH40_RS05820;Name=LPH40_RS05820;gbkey=Gene;gene_biotype=rRNA;locus_tag=LPH40_RS05820;old_locus_tag=LPH40_05820 NZ_CP087685.1 cmsearch rRNA 1449280 1452158 . + . ID=rna-LPH40_RS05820;Parent=gene-LPH40_RS05820;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS05820;product=23S ribosomal RNA NZ_CP087685.1 cmsearch exon 1449280 1452158 . + . ID=exon-LPH40_RS05820-1;Parent=rna-LPH40_RS05820;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS05820;product=23S ribosomal RNA NZ_CP087685.1 RefSeq gene 1452289 1452402 . + . ID=gene-LPH40_RS05825;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=LPH40_RS05825;old_locus_tag=LPH40_05825 NZ_CP087685.1 cmsearch rRNA 1452289 1452402 . + . ID=rna-LPH40_RS05825;Parent=gene-LPH40_RS05825;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS05825;product=5S ribosomal RNA NZ_CP087685.1 cmsearch exon 1452289 1452402 . + . ID=exon-LPH40_RS05825-1;Parent=rna-LPH40_RS05825;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS05825;product=5S ribosomal RNA NZ_CP087685.1 RefSeq gene 1452553 1453368 . + . ID=gene-LPH40_RS05830;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=LPH40_RS05830;old_locus_tag=LPH40_05830 NZ_CP087685.1 Protein Homology CDS 1452553 1453368 . + 0 ID=cds-WP_038273054.1;Parent=gene-LPH40_RS05830;Dbxref=Genbank:WP_038273054.1;Name=WP_038273054.1;Ontology_term=GO:0006281,GO:0006284,GO:0003676,GO:0003684,GO:0003906,GO:0008270,GO:0008534,GO:0016799,GO:0019104;gbkey=CDS;gene=mutM;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA,zinc ion binding|0008270||IEA,oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA,DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA,base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085054.1;locus_tag=LPH40_RS05830;product=bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase;protein_id=WP_038273054.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1453471 1454235 . - . ID=gene-LPH40_RS05835;Name=ccsA;gbkey=Gene;gene=ccsA;gene_biotype=protein_coding;locus_tag=LPH40_RS05835;old_locus_tag=LPH40_05835 NZ_CP087685.1 Protein Homology CDS 1453471 1454235 . - 0 ID=cds-WP_038273056.1;Parent=gene-LPH40_RS05835;Dbxref=Genbank:WP_038273056.1;Name=WP_038273056.1;Ontology_term=GO:0017004,GO:0020037;gbkey=CDS;gene=ccsA;go_function=heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085053.1;locus_tag=LPH40_RS05835;product=cytochrome c biogenesis protein CcsA;protein_id=WP_038273056.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1454387 1455754 . + . ID=gene-LPH40_RS05840;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=LPH40_RS05840;old_locus_tag=LPH40_05840 NZ_CP087685.1 Protein Homology CDS 1454387 1455754 . + 0 ID=cds-WP_038271862.1;Parent=gene-LPH40_RS05840;Dbxref=Genbank:WP_038271862.1;Name=WP_038271862.1;Ontology_term=GO:0009306,GO:0003924,GO:0005048,GO:0048501;gbkey=CDS;gene=ffh;go_component=signal recognition particle%2C plasma membrane targeting|0048501||IEA;go_function=GTPase activity|0003924||IEA,signal sequence binding|0005048||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407905.1;locus_tag=LPH40_RS05840;product=signal recognition particle protein;protein_id=WP_038271862.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1456814 1457611 . + . ID=gene-LPH40_RS05845;Name=LPH40_RS05845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05845;old_locus_tag=LPH40_05845 NZ_CP087685.1 Protein Homology CDS 1456814 1457611 . + 0 ID=cds-WP_038271859.1;Parent=gene-LPH40_RS05845;Dbxref=Genbank:WP_038271859.1;Name=WP_038271859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852873.1;locus_tag=LPH40_RS05845;product=aminotransferase class IV family protein;protein_id=WP_038271859.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1458008 1459000 . - . ID=gene-LPH40_RS05850;Name=LPH40_RS05850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05850;old_locus_tag=LPH40_05850 NZ_CP087685.1 Protein Homology CDS 1458008 1459000 . - 0 ID=cds-WP_230428138.1;Parent=gene-LPH40_RS05850;Dbxref=Genbank:WP_230428138.1;Name=WP_230428138.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337552.1;locus_tag=LPH40_RS05850;product=fimbrial protein;protein_id=WP_230428138.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1460866 1461873 . - . ID=gene-LPH40_RS05855;Name=LPH40_RS05855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05855;old_locus_tag=LPH40_05855 NZ_CP087685.1 Protein Homology CDS 1460866 1461873 . - 0 ID=cds-WP_230428139.1;Parent=gene-LPH40_RS05855;Dbxref=Genbank:WP_230428139.1;Name=WP_230428139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337552.1;locus_tag=LPH40_RS05855;product=fimbrial protein;protein_id=WP_230428139.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1461927 1464632 . - . ID=gene-LPH40_RS05860;Name=LPH40_RS05860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05860;old_locus_tag=LPH40_05860 NZ_CP087685.1 Protein Homology CDS 1461927 1464632 . - 0 ID=cds-WP_038271854.1;Parent=gene-LPH40_RS05860;Dbxref=Genbank:WP_038271854.1;Name=WP_038271854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085564.1;locus_tag=LPH40_RS05860;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_038271854.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1464660 1465511 . - . ID=gene-LPH40_RS05865;Name=LPH40_RS05865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05865;old_locus_tag=LPH40_05865 NZ_CP087685.1 Protein Homology CDS 1464660 1465511 . - 0 ID=cds-WP_230428140.1;Parent=gene-LPH40_RS05865;Dbxref=Genbank:WP_230428140.1;Name=WP_230428140.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085563.1;locus_tag=LPH40_RS05865;product=fimbria/pilus periplasmic chaperone;protein_id=WP_230428140.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1465529 1466083 . - . ID=gene-LPH40_RS05870;Name=LPH40_RS05870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05870;old_locus_tag=LPH40_05870 NZ_CP087685.1 Protein Homology CDS 1465529 1466083 . - 0 ID=cds-WP_038271866.1;Parent=gene-LPH40_RS05870;Dbxref=Genbank:WP_038271866.1;Name=WP_038271866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085562.1;locus_tag=LPH40_RS05870;product=fimbrial protein;protein_id=WP_038271866.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1468832 1469320 . - . ID=gene-LPH40_RS05875;Name=LPH40_RS05875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05875;old_locus_tag=LPH40_05875 NZ_CP087685.1 Protein Homology CDS 1468832 1469320 . - 0 ID=cds-WP_038271852.1;Parent=gene-LPH40_RS05875;Dbxref=Genbank:WP_038271852.1;Name=WP_038271852.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087680.1;locus_tag=LPH40_RS05875;product=CinA family protein;protein_id=WP_038271852.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1469404 1470711 . - . ID=gene-LPH40_RS05880;Name=LPH40_RS05880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05880;old_locus_tag=LPH40_05880 NZ_CP087685.1 Protein Homology CDS 1469404 1470711 . - 0 ID=cds-WP_038271849.1;Parent=gene-LPH40_RS05880;Dbxref=Genbank:WP_038271849.1;Name=WP_038271849.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087678.1;locus_tag=LPH40_RS05880;product=MFS family transporter;protein_id=WP_038271849.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1470767 1472140 . - . ID=gene-LPH40_RS05885;Name=hflX;gbkey=Gene;gene=hflX;gene_biotype=protein_coding;locus_tag=LPH40_RS05885;old_locus_tag=LPH40_05885 NZ_CP087685.1 Protein Homology CDS 1470767 1472140 . - 0 ID=cds-WP_038271847.1;Parent=gene-LPH40_RS05885;Dbxref=Genbank:WP_038271847.1;Name=WP_038271847.1;Ontology_term=GO:0005525;gbkey=CDS;gene=hflX;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853003.1;locus_tag=LPH40_RS05885;product=GTPase HflX;protein_id=WP_038271847.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1472155 1472433 . - . ID=gene-LPH40_RS05890;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=LPH40_RS05890;old_locus_tag=LPH40_05890 NZ_CP087685.1 Protein Homology CDS 1472155 1472433 . - 0 ID=cds-WP_038271845.1;Parent=gene-LPH40_RS05890;Dbxref=Genbank:WP_038271845.1;Name=WP_038271845.1;Ontology_term=GO:0006355,GO:0003723;gbkey=CDS;gene=hfq;go_function=RNA binding|0003723||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085558.1;locus_tag=LPH40_RS05890;product=RNA chaperone Hfq;protein_id=WP_038271845.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1472507 1473490 . - . ID=gene-LPH40_RS05895;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=LPH40_RS05895;old_locus_tag=LPH40_05895 NZ_CP087685.1 Protein Homology CDS 1472507 1473490 . - 0 ID=cds-WP_038271843.1;Parent=gene-LPH40_RS05895;Dbxref=Genbank:WP_038271843.1;Name=WP_038271843.1;Ontology_term=GO:0006400,GO:0052381,GO:0005737;gbkey=CDS;gene=miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA dimethylallyltransferase activity|0052381||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507485.1;locus_tag=LPH40_RS05895;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=WP_038271843.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1473490 1474377 . - . ID=gene-LPH40_RS05900;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=LPH40_RS05900;old_locus_tag=LPH40_05900 NZ_CP087685.1 Protein Homology CDS 1473490 1474377 . - 0 ID=cds-WP_038271841.1;Parent=gene-LPH40_RS05900;Dbxref=Genbank:WP_038271841.1;Name=WP_038271841.1;Ontology_term=GO:0009396,GO:0004156;gbkey=CDS;gene=folP;go_function=dihydropteroate synthase activity|0004156||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008268106.1;locus_tag=LPH40_RS05900;product=dihydropteroate synthase;protein_id=WP_038271841.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1474663 1476594 . - . ID=gene-LPH40_RS05905;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;locus_tag=LPH40_RS05905;old_locus_tag=LPH40_05905 NZ_CP087685.1 Protein Homology CDS 1474663 1476594 . - 0 ID=cds-WP_038271839.1;Parent=gene-LPH40_RS05905;Dbxref=Genbank:WP_038271839.1;Name=WP_038271839.1;Ontology_term=GO:0006508,GO:0051301,GO:0004222,GO:0016887;gbkey=CDS;gene=ftsH;go_function=metalloendopeptidase activity|0004222||IEA,ATP hydrolysis activity|0016887||IEA;go_process=proteolysis|0006508||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019399873.1;locus_tag=LPH40_RS05905;product=ATP-dependent zinc metalloprotease FtsH;protein_id=WP_038271839.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1476647 1477288 . - . ID=gene-LPH40_RS05910;Name=rlmE;gbkey=Gene;gene=rlmE;gene_biotype=protein_coding;locus_tag=LPH40_RS05910;old_locus_tag=LPH40_05910 NZ_CP087685.1 Protein Homology CDS 1476647 1477288 . - 0 ID=cds-WP_038271837.1;Parent=gene-LPH40_RS05910;Dbxref=Genbank:WP_038271837.1;Name=WP_038271837.1;Ontology_term=GO:0001510,GO:0006364,GO:0016436;gbkey=CDS;gene=rlmE;go_function=rRNA (uridine) methyltransferase activity|0016436||IEA;go_process=RNA methylation|0001510||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851792.1;locus_tag=LPH40_RS05910;product=23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE;protein_id=WP_038271837.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1477357 1477662 . + . ID=gene-LPH40_RS05915;Name=yhbY;gbkey=Gene;gene=yhbY;gene_biotype=protein_coding;locus_tag=LPH40_RS05915;old_locus_tag=LPH40_05915 NZ_CP087685.1 Protein Homology CDS 1477357 1477662 . + 0 ID=cds-WP_038271836.1;Parent=gene-LPH40_RS05915;Dbxref=Genbank:WP_038271836.1;Name=WP_038271836.1;Ontology_term=GO:0008150,GO:0003723,GO:0005737;gbkey=CDS;gene=yhbY;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300317.1;locus_tag=LPH40_RS05915;product=ribosome assembly RNA-binding protein YhbY;protein_id=WP_038271836.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1477681 1478070 . + . ID=gene-LPH40_RS05920;Name=LPH40_RS05920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05920;old_locus_tag=LPH40_05920 NZ_CP087685.1 Protein Homology CDS 1477681 1478070 . + 0 ID=cds-WP_038271835.1;Parent=gene-LPH40_RS05920;Dbxref=Genbank:WP_038271835.1;Name=WP_038271835.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085551.1;locus_tag=LPH40_RS05920;product=MTH938/NDUFAF3 family protein;protein_id=WP_038271835.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1478615 1478809 . + . ID=gene-LPH40_RS05925;Name=LPH40_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05925;old_locus_tag=LPH40_05925 NZ_CP087685.1 GeneMarkS-2+ CDS 1478615 1478809 . + 0 ID=cds-WP_038271834.1;Parent=gene-LPH40_RS05925;Dbxref=Genbank:WP_038271834.1;Name=WP_038271834.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05925;product=hypothetical protein;protein_id=WP_038271834.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1478887 1480725 . - . ID=gene-LPH40_RS05930;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=LPH40_RS05930;old_locus_tag=LPH40_05930 NZ_CP087685.1 Protein Homology CDS 1478887 1480725 . - 0 ID=cds-WP_038271833.1;Parent=gene-LPH40_RS05930;Dbxref=Genbank:WP_038271833.1;Name=WP_038271833.1;Ontology_term=GO:0009082,GO:0004160;gbkey=CDS;gene=ilvD;go_function=dihydroxy-acid dehydratase activity|0004160||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437115.1;locus_tag=LPH40_RS05930;product=dihydroxy-acid dehydratase;protein_id=WP_038271833.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1481381 1481551 . + . ID=gene-LPH40_RS05935;Name=LPH40_RS05935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05935;old_locus_tag=LPH40_05935 NZ_CP087685.1 GeneMarkS-2+ CDS 1481381 1481551 . + 0 ID=cds-WP_160165199.1;Parent=gene-LPH40_RS05935;Dbxref=Genbank:WP_160165199.1;Name=WP_160165199.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05935;product=hypothetical protein;protein_id=WP_160165199.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1481668 1481817 . - . ID=gene-LPH40_RS05940;Name=LPH40_RS05940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05940;old_locus_tag=LPH40_05940 NZ_CP087685.1 GeneMarkS-2+ CDS 1481668 1481817 . - 0 ID=cds-WP_160165198.1;Parent=gene-LPH40_RS05940;Dbxref=Genbank:WP_160165198.1;Name=WP_160165198.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05940;product=hypothetical protein;protein_id=WP_160165198.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1482118 1482315 . + . ID=gene-LPH40_RS05945;Name=LPH40_RS05945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05945;old_locus_tag=LPH40_05945 NZ_CP087685.1 Protein Homology CDS 1482118 1482315 . + 0 ID=cds-WP_038271831.1;Parent=gene-LPH40_RS05945;Dbxref=Genbank:WP_038271831.1;Name=WP_038271831.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483377.1;locus_tag=LPH40_RS05945;product=zinc-finger domain-containing protein;protein_id=WP_038271831.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1482331 1483443 . + . ID=gene-LPH40_RS05950;Name=LPH40_RS05950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05950;old_locus_tag=LPH40_05950 NZ_CP087685.1 Protein Homology CDS 1482331 1483443 . + 0 ID=cds-WP_038271830.1;Parent=gene-LPH40_RS05950;Dbxref=Genbank:WP_038271830.1;Name=WP_038271830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851795.1;locus_tag=LPH40_RS05950;product=glycosyltransferase;protein_id=WP_038271830.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1483424 1484770 . + . ID=gene-LPH40_RS05955;Name=LPH40_RS05955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05955;old_locus_tag=LPH40_05955 NZ_CP087685.1 Protein Homology CDS 1483424 1484770 . + 0 ID=cds-WP_038271829.1;Parent=gene-LPH40_RS05955;Dbxref=Genbank:WP_038271829.1;Name=WP_038271829.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851796.1;locus_tag=LPH40_RS05955;product=O-antigen ligase;protein_id=WP_038271829.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1484967 1485887 . - . ID=gene-LPH40_RS05960;Name=LPH40_RS05960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05960;old_locus_tag=LPH40_05960 NZ_CP087685.1 Protein Homology CDS 1484967 1485887 . - 0 ID=cds-WP_038271828.1;Parent=gene-LPH40_RS05960;Dbxref=Genbank:WP_038271828.1;Name=WP_038271828.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851797.1;locus_tag=LPH40_RS05960;product=LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase;protein_id=WP_038271828.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1485968 1487278 . + . ID=gene-LPH40_RS05965;Name=waaA;gbkey=Gene;gene=waaA;gene_biotype=protein_coding;locus_tag=LPH40_RS05965;old_locus_tag=LPH40_05965 NZ_CP087685.1 Protein Homology CDS 1485968 1487278 . + 0 ID=cds-WP_038271827.1;Parent=gene-LPH40_RS05965;Dbxref=Genbank:WP_038271827.1;Name=WP_038271827.1;Ontology_term=GO:0016740;gbkey=CDS;gene=waaA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097494.1;locus_tag=LPH40_RS05965;product=lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_038271827.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1488661 1490043 . + . ID=gene-LPH40_RS05970;Name=LPH40_RS05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05970;old_locus_tag=LPH40_05970 NZ_CP087685.1 Protein Homology CDS 1488661 1490043 . + 0 ID=cds-WP_038271826.1;Parent=gene-LPH40_RS05970;Dbxref=Genbank:WP_038271826.1;Name=WP_038271826.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085544.1;locus_tag=LPH40_RS05970;product=alpha-L-fucosidase;protein_id=WP_038271826.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1491353 1491613 . + . ID=gene-LPH40_RS05975;Name=LPH40_RS05975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS05975;old_locus_tag=LPH40_05975 NZ_CP087685.1 GeneMarkS-2+ CDS 1491353 1491613 . + 0 ID=cds-WP_152536642.1;Parent=gene-LPH40_RS05975;Dbxref=Genbank:WP_152536642.1;Name=WP_152536642.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS05975;product=hypothetical protein;protein_id=WP_152536642.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1492908 1493168 . + . ID=gene-LPH40_RS05980;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=LPH40_RS05980;old_locus_tag=LPH40_05980 NZ_CP087685.1 Protein Homology CDS 1492908 1493168 . + 0 ID=cds-WP_038271824.1;Parent=gene-LPH40_RS05980;Dbxref=Genbank:WP_038271824.1;Name=WP_038271824.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsP;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036396.1;locus_tag=LPH40_RS05980;product=30S ribosomal protein S16;protein_id=WP_038271824.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1493213 1493725 . + . ID=gene-LPH40_RS05985;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=LPH40_RS05985;old_locus_tag=LPH40_05985 NZ_CP087685.1 Protein Homology CDS 1493213 1493725 . + 0 ID=cds-WP_038271823.1;Parent=gene-LPH40_RS05985;Dbxref=Genbank:WP_038271823.1;Name=WP_038271823.1;Note=Essential for efficient processing of 16S rRNA;Ontology_term=GO:0006364,GO:0003723;gbkey=CDS;gene=rimM;go_function=RNA binding|0003723||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085542.1;locus_tag=LPH40_RS05985;product=ribosome maturation factor RimM;protein_id=WP_038271823.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1493837 1494610 . + . ID=gene-LPH40_RS05990;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=LPH40_RS05990;old_locus_tag=LPH40_05990 NZ_CP087685.1 Protein Homology CDS 1493837 1494610 . + 0 ID=cds-WP_038271822.1;Parent=gene-LPH40_RS05990;Dbxref=Genbank:WP_038271822.1;Name=WP_038271822.1;Ontology_term=GO:0008033,GO:0052906;gbkey=CDS;gene=trmD;go_function=tRNA (guanine(37)-N(1))-methyltransferase activity|0052906||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892655.1;locus_tag=LPH40_RS05990;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=WP_038271822.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1494786 1495196 . + . ID=gene-LPH40_RS05995;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=LPH40_RS05995;old_locus_tag=LPH40_05995 NZ_CP087685.1 Protein Homology CDS 1494786 1495196 . + 0 ID=cds-WP_038271821.1;Parent=gene-LPH40_RS05995;Dbxref=Genbank:WP_038271821.1;Name=WP_038271821.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplS;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892656.1;locus_tag=LPH40_RS05995;product=50S ribosomal protein L19;protein_id=WP_038271821.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1495766 1496542 . + . ID=gene-LPH40_RS06000;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=LPH40_RS06000;old_locus_tag=LPH40_06000 NZ_CP087685.1 Protein Homology CDS 1495766 1496542 . + 0 ID=cds-WP_038271820.1;Parent=gene-LPH40_RS06000;Dbxref=Genbank:WP_038271820.1;Name=WP_038271820.1;Ontology_term=GO:0036211;gbkey=CDS;gene=map;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085539.1;locus_tag=LPH40_RS06000;product=type I methionyl aminopeptidase;protein_id=WP_038271820.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1496582 1499158 . + . ID=gene-LPH40_RS06005;Name=glnD;gbkey=Gene;gene=glnD;gene_biotype=pseudogene;locus_tag=LPH40_RS06005;old_locus_tag=LPH40_06005;pseudo=true NZ_CP087685.1 Protein Homology CDS 1496582 1499158 . + 0 ID=cds-LPH40_RS06005;Parent=gene-LPH40_RS06005;Note=frameshifted%3B internal stop;Ontology_term=GO:0018177,GO:0008773;gbkey=CDS;gene=glnD;go_function=[protein-PII] uridylyltransferase activity|0008773||IEA;go_process=protein uridylylation|0018177||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810763.1;locus_tag=LPH40_RS06005;product=[protein-PII] uridylyltransferase;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1499155 1500054 . + . ID=gene-LPH40_RS06010;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=LPH40_RS06010;old_locus_tag=LPH40_06010 NZ_CP087685.1 Protein Homology CDS 1499155 1500054 . + 0 ID=cds-WP_038271818.1;Parent=gene-LPH40_RS06010;Dbxref=Genbank:WP_038271818.1;Name=WP_038271818.1;Ontology_term=GO:0009089,GO:0008666;gbkey=CDS;gene=dapD;go_function=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase activity|0008666||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851801.1;locus_tag=LPH40_RS06010;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_038271818.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1500069 1500425 . + . ID=gene-LPH40_RS06015;Name=LPH40_RS06015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06015;old_locus_tag=LPH40_06015 NZ_CP087685.1 Protein Homology CDS 1500069 1500425 . + 0 ID=cds-WP_038271816.1;Parent=gene-LPH40_RS06015;Dbxref=Genbank:WP_038271816.1;Name=WP_038271816.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115327.1;locus_tag=LPH40_RS06015;product=Spx/MgsR family RNA polymerase-binding regulatory protein;protein_id=WP_038271816.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1500576 1501709 . + . ID=gene-LPH40_RS06020;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;locus_tag=LPH40_RS06020;old_locus_tag=LPH40_06020 NZ_CP087685.1 Protein Homology CDS 1500576 1501709 . + 0 ID=cds-WP_038271813.1;Parent=gene-LPH40_RS06020;Dbxref=Genbank:WP_038271813.1;Name=WP_038271813.1;Ontology_term=GO:0009089,GO:0009014;gbkey=CDS;gene=dapE;go_function=succinyl-diaminopimelate desuccinylase activity|0009014||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097497.1;locus_tag=LPH40_RS06020;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_038271813.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1502111 1503802 . + . ID=gene-LPH40_RS06025;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=LPH40_RS06025;old_locus_tag=LPH40_06025 NZ_CP087685.1 Protein Homology CDS 1502111 1503802 . + 0 ID=cds-WP_038271812.1;Parent=gene-LPH40_RS06025;Dbxref=Genbank:WP_038271812.1;Name=WP_038271812.1;Ontology_term=GO:0006529,GO:0004066;gbkey=CDS;gene=asnB;go_function=asparagine synthase (glutamine-hydrolyzing) activity|0004066||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008268785.1;locus_tag=LPH40_RS06025;product=asparagine synthase B;protein_id=WP_038271812.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1503861 1504886 . - . ID=gene-LPH40_RS06030;Name=LPH40_RS06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06030;old_locus_tag=LPH40_06030 NZ_CP087685.1 Protein Homology CDS 1503861 1504886 . - 0 ID=cds-WP_038271810.1;Parent=gene-LPH40_RS06030;Dbxref=Genbank:WP_038271810.1;Name=WP_038271810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155705.1;locus_tag=LPH40_RS06030;product=right-handed parallel beta-helix repeat-containing protein;protein_id=WP_038271810.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1506376 1507404 . + . ID=gene-LPH40_RS06035;Name=LPH40_RS06035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06035;old_locus_tag=LPH40_06035 NZ_CP087685.1 Protein Homology CDS 1506376 1507404 . + 0 ID=cds-WP_201745795.1;Parent=gene-LPH40_RS06035;Dbxref=Genbank:WP_201745795.1;Name=WP_201745795.1;Ontology_term=GO:0018580;gbkey=CDS;go_function=nitronate monooxygenase activity|0018580||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085533.1;locus_tag=LPH40_RS06035;product=nitronate monooxygenase;protein_id=WP_201745795.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1508311 1508466 . - . ID=gene-LPH40_RS06040;Name=LPH40_RS06040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06040;old_locus_tag=LPH40_06040 NZ_CP087685.1 GeneMarkS-2+ CDS 1508311 1508466 . - 0 ID=cds-WP_160165196.1;Parent=gene-LPH40_RS06040;Dbxref=Genbank:WP_160165196.1;Name=WP_160165196.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06040;product=hypothetical protein;protein_id=WP_160165196.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1509304 1509939 . + . ID=gene-LPH40_RS06045;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;locus_tag=LPH40_RS06045;old_locus_tag=LPH40_06045 NZ_CP087685.1 Protein Homology CDS 1509304 1509939 . + 0 ID=cds-WP_038271803.1;Parent=gene-LPH40_RS06045;Dbxref=Genbank:WP_038271803.1;Name=WP_038271803.1;Ontology_term=GO:0006282,GO:0006355,GO:0004252;gbkey=CDS;gene=lexA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=regulation of DNA repair|0006282||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269877.1;locus_tag=LPH40_RS06045;product=transcriptional repressor LexA;protein_id=WP_038271803.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1510120 1511157 . + . ID=gene-LPH40_RS06050;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=LPH40_RS06050;old_locus_tag=LPH40_06050 NZ_CP087685.1 Protein Homology CDS 1510120 1511157 . + 0 ID=cds-WP_038271801.1;Parent=gene-LPH40_RS06050;Dbxref=Genbank:WP_038271801.1;Name=WP_038271801.1;Ontology_term=GO:0006281,GO:0006310,GO:0009432,GO:0003677,GO:0008094,GO:0005737;gbkey=CDS;gene=recA;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA,ATP-dependent activity%2C acting on DNA|0008094||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA,SOS response|0009432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992375.1;locus_tag=LPH40_RS06050;product=recombinase RecA;protein_id=WP_038271801.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1511873 1514524 . + . ID=gene-LPH40_RS06055;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=LPH40_RS06055;old_locus_tag=LPH40_06055 NZ_CP087685.1 Protein Homology CDS 1511873 1514524 . + 0 ID=cds-WP_038271800.1;Parent=gene-LPH40_RS06055;Dbxref=Genbank:WP_038271800.1;Name=WP_038271800.1;Ontology_term=GO:0006419,GO:0004813,GO:0005737;gbkey=CDS;gene=alaS;go_component=cytoplasm|0005737||IEA;go_function=alanine-tRNA ligase activity|0004813||IEA;go_process=alanyl-tRNA aminoacylation|0006419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087615.1;locus_tag=LPH40_RS06055;product=alanine--tRNA ligase;protein_id=WP_038271800.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1514664 1514879 . + . ID=gene-LPH40_RS06060;Name=csrA;gbkey=Gene;gene=csrA;gene_biotype=protein_coding;locus_tag=LPH40_RS06060;old_locus_tag=LPH40_06060 NZ_CP087685.1 Protein Homology CDS 1514664 1514879 . + 0 ID=cds-WP_038271798.1;Parent=gene-LPH40_RS06060;Dbxref=Genbank:WP_038271798.1;Name=WP_038271798.1;Ontology_term=GO:0006109,GO:0006402,GO:0003723;gbkey=CDS;gene=csrA;go_function=RNA binding|0003723||IEA;go_process=regulation of carbohydrate metabolic process|0006109||IEA,mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085529.1;locus_tag=LPH40_RS06060;product=carbon storage regulator CsrA;protein_id=WP_038271798.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1514957 1515049 . + . ID=gene-LPH40_RS06065;Name=LPH40_RS06065;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS06065;old_locus_tag=LPH40_06065 NZ_CP087685.1 tRNAscan-SE tRNA 1514957 1515049 . + . ID=rna-LPH40_RS06065;Parent=gene-LPH40_RS06065;anticodon=(pos:1514991..1514993);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06065;product=tRNA-Ser NZ_CP087685.1 tRNAscan-SE exon 1514957 1515049 . + . ID=exon-LPH40_RS06065-1;Parent=rna-LPH40_RS06065;anticodon=(pos:1514991..1514993);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06065;product=tRNA-Ser NZ_CP087685.1 RefSeq gene 1516050 1518074 . - . ID=gene-LPH40_RS06070;Name=LPH40_RS06070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06070;old_locus_tag=LPH40_06070 NZ_CP087685.1 Protein Homology CDS 1516050 1518074 . - 0 ID=cds-WP_038271796.1;Parent=gene-LPH40_RS06070;Dbxref=Genbank:WP_038271796.1;Name=WP_038271796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892672.1;locus_tag=LPH40_RS06070;product=M3 family metallopeptidase;protein_id=WP_038271796.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1518133 1519239 . - . ID=gene-LPH40_RS06075;Name=LPH40_RS06075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06075;old_locus_tag=LPH40_06075 NZ_CP087685.1 Protein Homology CDS 1518133 1519239 . - 0 ID=cds-WP_038271794.1;Parent=gene-LPH40_RS06075;Dbxref=Genbank:WP_038271794.1;Name=WP_038271794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304765.1;locus_tag=LPH40_RS06075;product=PLP-dependent cysteine synthase family protein;protein_id=WP_038271794.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1519432 1520022 . + . ID=gene-LPH40_RS06080;Name=LPH40_RS06080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06080;old_locus_tag=LPH40_06080 NZ_CP087685.1 Protein Homology CDS 1519432 1520022 . + 0 ID=cds-WP_230428142.1;Parent=gene-LPH40_RS06080;Dbxref=Genbank:WP_230428142.1;Name=WP_230428142.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852913.1;locus_tag=LPH40_RS06080;product=CopL family metal-binding regulatory protein;protein_id=WP_230428142.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1520125 1521948 . + . ID=gene-LPH40_RS06085;Name=LPH40_RS06085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06085;old_locus_tag=LPH40_06085 NZ_CP087685.1 Protein Homology CDS 1520125 1521948 . + 0 ID=cds-WP_038271792.1;Parent=gene-LPH40_RS06085;Dbxref=Genbank:WP_038271792.1;Name=WP_038271792.1;Ontology_term=GO:0006825,GO:0005375,GO:0005507;gbkey=CDS;go_function=copper ion transmembrane transporter activity|0005375||IEA,copper ion binding|0005507||IEA;go_process=copper ion transport|0006825||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337562.1;locus_tag=LPH40_RS06085;product=copper resistance system multicopper oxidase;protein_id=WP_038271792.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1522170 1522343 . + . ID=gene-LPH40_RS12000;Name=LPH40_RS12000;end_range=1522343,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS12000;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1522170 1522343 . + 0 ID=cds-LPH40_RS12000;Parent=gene-LPH40_RS12000;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1522343,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_032491577.1;locus_tag=LPH40_RS12000;partial=true;product=copper resistance protein B;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1522662 1523270 . + . ID=gene-LPH40_RS06090;Name=LPH40_RS06090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06090;old_locus_tag=LPH40_06090 NZ_CP087685.1 Protein Homology CDS 1522662 1523270 . + 0 ID=cds-WP_267903178.1;Parent=gene-LPH40_RS06090;Dbxref=Genbank:WP_267903178.1;Name=WP_267903178.1;Ontology_term=GO:0006878,GO:0005507,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=copper ion binding|0005507||IEA;go_process=cellular copper ion homeostasis|0006878||IEA;inference=COORDINATES: protein motif:HMM:NF017119.2;locus_tag=LPH40_RS06090;product=copper resistance protein B;protein_id=WP_267903178.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1523926 1526892 . - . ID=gene-LPH40_RS06095;Name=LPH40_RS06095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06095;old_locus_tag=LPH40_06095 NZ_CP087685.1 Protein Homology CDS 1523926 1526892 . - 0 ID=cds-WP_038272400.1;Parent=gene-LPH40_RS06095;Dbxref=Genbank:WP_038272400.1;Name=WP_038272400.1;Ontology_term=GO:0006438,GO:0000166,GO:0004812,GO:0004832,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,valine-tRNA ligase activity|0004832||IEA,ATP binding|0005524||IEA;go_process=valyl-tRNA aminoacylation|0006438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087603.1;locus_tag=LPH40_RS06095;product=valine--tRNA ligase;protein_id=WP_038272400.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1526930 1527127 . - . ID=gene-LPH40_RS06100;Name=LPH40_RS06100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06100;old_locus_tag=LPH40_06100 NZ_CP087685.1 Protein Homology CDS 1526930 1527127 . - 0 ID=cds-WP_038272397.1;Parent=gene-LPH40_RS06100;Dbxref=Genbank:WP_038272397.1;Name=WP_038272397.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097503.1;locus_tag=LPH40_RS06100;product=hypothetical protein;protein_id=WP_038272397.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1527162 1527587 . - . ID=gene-LPH40_RS06105;Name=LPH40_RS06105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06105;old_locus_tag=LPH40_06105 NZ_CP087685.1 Protein Homology CDS 1527162 1527587 . - 0 ID=cds-WP_038272394.1;Parent=gene-LPH40_RS06105;Dbxref=Genbank:WP_038272394.1;Name=WP_038272394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902887.1;locus_tag=LPH40_RS06105;product=DNA polymerase III subunit chi;protein_id=WP_038272394.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1527587 1527973 . - . ID=gene-LPH40_RS06110;Name=LPH40_RS06110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06110;old_locus_tag=LPH40_06110 NZ_CP087685.1 Protein Homology CDS 1527587 1527973 . - 0 ID=cds-WP_230428143.1;Parent=gene-LPH40_RS06110;Dbxref=Genbank:WP_230428143.1;Name=WP_230428143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087600.1;locus_tag=LPH40_RS06110;product=hypothetical protein;protein_id=WP_230428143.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1528039 1529514 . - . ID=gene-LPH40_RS06115;Name=LPH40_RS06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06115;old_locus_tag=LPH40_06115 NZ_CP087685.1 Protein Homology CDS 1528039 1529514 . - 0 ID=cds-WP_038272389.1;Parent=gene-LPH40_RS06115;Dbxref=Genbank:WP_038272389.1;Name=WP_038272389.1;Ontology_term=GO:0019538,GO:0070006;gbkey=CDS;go_function=metalloaminopeptidase activity|0070006||IEA;go_process=protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087599.1;locus_tag=LPH40_RS06115;product=leucyl aminopeptidase;protein_id=WP_038272389.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1529624 1530706 . + . ID=gene-LPH40_RS06120;Name=lptF;gbkey=Gene;gene=lptF;gene_biotype=protein_coding;locus_tag=LPH40_RS06120;old_locus_tag=LPH40_06120 NZ_CP087685.1 Protein Homology CDS 1529624 1530706 . + 0 ID=cds-WP_038272386.1;Parent=gene-LPH40_RS06120;Dbxref=Genbank:WP_038272386.1;Name=WP_038272386.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptF;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852559.1;locus_tag=LPH40_RS06120;product=LPS export ABC transporter permease LptF;protein_id=WP_038272386.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1530703 1531812 . + . ID=gene-LPH40_RS06125;Name=lptG;gbkey=Gene;gene=lptG;gene_biotype=protein_coding;locus_tag=LPH40_RS06125;old_locus_tag=LPH40_06125 NZ_CP087685.1 Protein Homology CDS 1530703 1531812 . + 0 ID=cds-WP_038272383.1;Parent=gene-LPH40_RS06125;Dbxref=Genbank:WP_038272383.1;Name=WP_038272383.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptG;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085518.1;locus_tag=LPH40_RS06125;product=LPS export ABC transporter permease LptG;protein_id=WP_038272383.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1532015 1532284 . - . ID=gene-LPH40_RS06130;Name=LPH40_RS06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06130;old_locus_tag=LPH40_06130 NZ_CP087685.1 GeneMarkS-2+ CDS 1532015 1532284 . - 0 ID=cds-WP_152536655.1;Parent=gene-LPH40_RS06130;Dbxref=Genbank:WP_152536655.1;Name=WP_152536655.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06130;product=hypothetical protein;protein_id=WP_152536655.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1533135 1534964 . + . ID=gene-LPH40_RS06135;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=LPH40_RS06135;old_locus_tag=LPH40_06135 NZ_CP087685.1 Protein Homology CDS 1533135 1534964 . + 0 ID=cds-WP_038272409.1;Parent=gene-LPH40_RS06135;Dbxref=Genbank:WP_038272409.1;Name=WP_038272409.1;Ontology_term=GO:0006040,GO:0009252,GO:0004360;gbkey=CDS;gene=glmS;go_function=glutamine-fructose-6-phosphate transaminase (isomerizing) activity|0004360||IEA;go_process=amino sugar metabolic process|0006040||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159863.1;locus_tag=LPH40_RS06135;product=glutamine--fructose-6-phosphate transaminase (isomerizing);protein_id=WP_038272409.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1535158 1535799 . - . ID=gene-LPH40_RS06140;Name=LPH40_RS06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06140;old_locus_tag=LPH40_06140 NZ_CP087685.1 Protein Homology CDS 1535158 1535799 . - 0 ID=cds-WP_038272377.1;Parent=gene-LPH40_RS06140;Dbxref=Genbank:WP_038272377.1;Name=WP_038272377.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016207.2;locus_tag=LPH40_RS06140;product=FMN-binding negative transcriptional regulator;protein_id=WP_038272377.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1536181 1536528 . - . ID=gene-LPH40_RS06145;Name=LPH40_RS06145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06145;old_locus_tag=LPH40_06145 NZ_CP087685.1 GeneMarkS-2+ CDS 1536181 1536528 . - 0 ID=cds-WP_038272374.1;Parent=gene-LPH40_RS06145;Dbxref=Genbank:WP_038272374.1;Name=WP_038272374.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06145;product=hypothetical protein;protein_id=WP_038272374.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1536982 1537839 . - . ID=gene-LPH40_RS06150;Name=speE;gbkey=Gene;gene=speE;gene_biotype=protein_coding;locus_tag=LPH40_RS06150;old_locus_tag=LPH40_06150 NZ_CP087685.1 Protein Homology CDS 1536982 1537839 . - 0 ID=cds-WP_038272371.1;Parent=gene-LPH40_RS06150;Dbxref=Genbank:WP_038272371.1;Name=WP_038272371.1;gbkey=CDS;gene=speE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305070.1;locus_tag=LPH40_RS06150;product=polyamine aminopropyltransferase;protein_id=WP_038272371.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1538058 1539944 . + . ID=gene-LPH40_RS06155;Name=speA;gbkey=Gene;gene=speA;gene_biotype=protein_coding;locus_tag=LPH40_RS06155;old_locus_tag=LPH40_06155 NZ_CP087685.1 Protein Homology CDS 1538058 1539944 . + 0 ID=cds-WP_038272368.1;Parent=gene-LPH40_RS06155;Dbxref=Genbank:WP_038272368.1;Name=WP_038272368.1;Ontology_term=GO:0008295,GO:0008792;gbkey=CDS;gene=speA;go_function=arginine decarboxylase activity|0008792||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892689.1;locus_tag=LPH40_RS06155;product=arginine decarboxylase;protein_id=WP_038272368.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1540381 1541136 . - . ID=gene-LPH40_RS06160;Name=LPH40_RS06160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06160;old_locus_tag=LPH40_06160 NZ_CP087685.1 Protein Homology CDS 1540381 1541136 . - 0 ID=cds-WP_038272367.1;Parent=gene-LPH40_RS06160;Dbxref=Genbank:WP_038272367.1;Name=WP_038272367.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995556.1;locus_tag=LPH40_RS06160;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_038272367.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1541232 1542029 . - . ID=gene-LPH40_RS06165;Name=LPH40_RS06165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06165;old_locus_tag=LPH40_06165 NZ_CP087685.1 Protein Homology CDS 1541232 1542029 . - 0 ID=cds-WP_038272365.1;Parent=gene-LPH40_RS06165;Dbxref=Genbank:WP_038272365.1;Name=WP_038272365.1;Ontology_term=GO:0042834;gbkey=CDS;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085513.1;locus_tag=LPH40_RS06165;product=SPOR domain-containing protein;protein_id=WP_038272365.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1542069 1543757 . - . ID=gene-LPH40_RS06170;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=LPH40_RS06170;old_locus_tag=LPH40_06170 NZ_CP087685.1 Protein Homology CDS 1542069 1543757 . - 0 ID=cds-WP_038272360.1;Parent=gene-LPH40_RS06170;Dbxref=Genbank:WP_038272360.1;Name=WP_038272360.1;Ontology_term=GO:0006420,GO:0004814,GO:0005737;gbkey=CDS;gene=argS;go_component=cytoplasm|0005737||IEA;go_function=arginine-tRNA ligase activity|0004814||IEA;go_process=arginyl-tRNA aminoacylation|0006420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300787.1;locus_tag=LPH40_RS06170;product=arginine--tRNA ligase;protein_id=WP_038272360.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1543884 1544558 . - . ID=gene-LPH40_RS06175;Name=radC;gbkey=Gene;gene=radC;gene_biotype=protein_coding;locus_tag=LPH40_RS06175;old_locus_tag=LPH40_06175 NZ_CP087685.1 Protein Homology CDS 1543884 1544558 . - 0 ID=cds-WP_038272357.1;Parent=gene-LPH40_RS06175;Dbxref=Genbank:WP_038272357.1;Name=WP_038272357.1;Ontology_term=GO:0006281,GO:0003677;gbkey=CDS;gene=radC;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097508.1;locus_tag=LPH40_RS06175;product=DNA repair protein RadC;protein_id=WP_038272357.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1544656 1545885 . + . ID=gene-LPH40_RS06180;Name=coaBC;gbkey=Gene;gene=coaBC;gene_biotype=protein_coding;locus_tag=LPH40_RS06180;old_locus_tag=LPH40_06180 NZ_CP087685.1 Protein Homology CDS 1544656 1545885 . + 0 ID=cds-WP_038272355.1;Parent=gene-LPH40_RS06180;Dbxref=Genbank:WP_038272355.1;Name=WP_038272355.1;Ontology_term=GO:0015937,GO:0015939,GO:0004632,GO:0004633;gbkey=CDS;gene=coaBC;go_function=phosphopantothenate--cysteine ligase activity|0004632||IEA,phosphopantothenoylcysteine decarboxylase activity|0004633||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA,pantothenate metabolic process|0015939||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964144.1;locus_tag=LPH40_RS06180;product=bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC;protein_id=WP_038272355.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1545882 1546349 . + . ID=gene-LPH40_RS06185;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;locus_tag=LPH40_RS06185;old_locus_tag=LPH40_06185 NZ_CP087685.1 Protein Homology CDS 1545882 1546349 . + 0 ID=cds-WP_038272353.1;Parent=gene-LPH40_RS06185;Dbxref=Genbank:WP_038272353.1;Name=WP_038272353.1;Ontology_term=GO:0006226,GO:0046081,GO:0000287,GO:0004170;gbkey=CDS;gene=dut;go_function=magnesium ion binding|0000287||IEA,dUTP diphosphatase activity|0004170||IEA;go_process=dUMP biosynthetic process|0006226||IEA,dUTP catabolic process|0046081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087579.1;locus_tag=LPH40_RS06185;product=dUTP diphosphatase;protein_id=WP_038272353.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1546363 1548723 . + . ID=gene-LPH40_RS06190;Name=LPH40_RS06190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06190;old_locus_tag=LPH40_06190 NZ_CP087685.1 Protein Homology CDS 1546363 1548723 . + 0 ID=cds-WP_038272350.1;Parent=gene-LPH40_RS06190;Dbxref=Genbank:WP_038272350.1;Name=WP_038272350.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085508.1;locus_tag=LPH40_RS06190;product=phosphomannomutase/phosphoglucomutase;protein_id=WP_038272350.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1548730 1549416 . - . ID=gene-LPH40_RS06195;Name=LPH40_RS06195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06195;old_locus_tag=LPH40_06195 NZ_CP087685.1 Protein Homology CDS 1548730 1549416 . - 0 ID=cds-WP_038272347.1;Parent=gene-LPH40_RS06195;Dbxref=Genbank:WP_038272347.1;Name=WP_038272347.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085507.1;locus_tag=LPH40_RS06195;product=hypothetical protein;protein_id=WP_038272347.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1549440 1550099 . - . ID=gene-LPH40_RS06200;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=LPH40_RS06200;old_locus_tag=LPH40_06200 NZ_CP087685.1 Protein Homology CDS 1549440 1550099 . - 0 ID=cds-WP_038272344.1;Parent=gene-LPH40_RS06200;Dbxref=Genbank:WP_038272344.1;Name=WP_038272344.1;Ontology_term=GO:0009220,GO:0004588;gbkey=CDS;gene=pyrE;go_function=orotate phosphoribosyltransferase activity|0004588||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374714.1;locus_tag=LPH40_RS06200;product=orotate phosphoribosyltransferase;protein_id=WP_038272344.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1550673 1551482 . + . ID=gene-LPH40_RS06205;Name=LPH40_RS06205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06205;old_locus_tag=LPH40_06205 NZ_CP087685.1 Protein Homology CDS 1550673 1551482 . + 0 ID=cds-WP_038272342.1;Parent=gene-LPH40_RS06205;Dbxref=Genbank:WP_038272342.1;Name=WP_038272342.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085505.1;locus_tag=LPH40_RS06205;product=DUF3289 family protein;protein_id=WP_038272342.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1551785 1552600 . - . ID=gene-LPH40_RS06210;Name=LPH40_RS06210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06210;old_locus_tag=LPH40_06210 NZ_CP087685.1 Protein Homology CDS 1551785 1552600 . - 0 ID=cds-WP_038272339.1;Parent=gene-LPH40_RS06210;Dbxref=Genbank:WP_038272339.1;Name=WP_038272339.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892701.1;locus_tag=LPH40_RS06210;product=C39 family peptidase;protein_id=WP_038272339.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1554089 1554922 . + . ID=gene-LPH40_RS06215;Name=LPH40_RS06215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06215;old_locus_tag=LPH40_06215 NZ_CP087685.1 Protein Homology CDS 1554089 1554922 . + 0 ID=cds-WP_230428145.1;Parent=gene-LPH40_RS06215;Dbxref=Genbank:WP_230428145.1;Name=WP_230428145.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085503.1;locus_tag=LPH40_RS06215;product=restriction endonuclease;protein_id=WP_230428145.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1554906 1555175 . + . ID=gene-LPH40_RS06220;Name=LPH40_RS06220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06220;old_locus_tag=LPH40_06220 NZ_CP087685.1 Protein Homology CDS 1554906 1555175 . + 0 ID=cds-WP_038272337.1;Parent=gene-LPH40_RS06220;Dbxref=Genbank:WP_038272337.1;Name=WP_038272337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852674.1;locus_tag=LPH40_RS06220;product=hypothetical protein;protein_id=WP_038272337.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1555488 1555850 . + . ID=gene-LPH40_RS06225;Name=LPH40_RS06225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06225;old_locus_tag=LPH40_06225 NZ_CP087685.1 GeneMarkS-2+ CDS 1555488 1555850 . + 0 ID=cds-WP_230428146.1;Parent=gene-LPH40_RS06225;Dbxref=Genbank:WP_230428146.1;Name=WP_230428146.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06225;product=hypothetical protein;protein_id=WP_230428146.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1555980 1556936 . + . ID=gene-LPH40_RS06230;Name=LPH40_RS06230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06230;old_locus_tag=LPH40_06230 NZ_CP087685.1 Protein Homology CDS 1555980 1556936 . + 0 ID=cds-WP_230428147.1;Parent=gene-LPH40_RS06230;Dbxref=Genbank:WP_230428147.1;Name=WP_230428147.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021594.2;locus_tag=LPH40_RS06230;product=DUF2326 domain-containing protein;protein_id=WP_230428147.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1557648 1557800 . + . ID=gene-LPH40_RS06235;Name=LPH40_RS06235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06235;old_locus_tag=LPH40_06235 NZ_CP087685.1 GeneMarkS-2+ CDS 1557648 1557800 . + 0 ID=cds-WP_171898038.1;Parent=gene-LPH40_RS06235;Dbxref=Genbank:WP_171898038.1;Name=WP_171898038.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06235;product=hypothetical protein;protein_id=WP_171898038.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1557887 1558051 . + . ID=gene-LPH40_RS06240;Name=LPH40_RS06240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06240;old_locus_tag=LPH40_06240 NZ_CP087685.1 GeneMarkS-2+ CDS 1557887 1558051 . + 0 ID=cds-WP_216651944.1;Parent=gene-LPH40_RS06240;Dbxref=Genbank:WP_216651944.1;Name=WP_216651944.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06240;product=hypothetical protein;protein_id=WP_216651944.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1558594 1558929 . - . ID=gene-LPH40_RS06245;Name=LPH40_RS06245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06245;old_locus_tag=LPH40_06245 NZ_CP087685.1 GeneMarkS-2+ CDS 1558594 1558929 . - 0 ID=cds-WP_152536654.1;Parent=gene-LPH40_RS06245;Dbxref=Genbank:WP_152536654.1;Name=WP_152536654.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06245;product=hypothetical protein;protein_id=WP_152536654.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1559555 1560355 . + . ID=gene-LPH40_RS06250;Name=LPH40_RS06250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06250;old_locus_tag=LPH40_06250 NZ_CP087685.1 Protein Homology CDS 1559555 1560355 . + 0 ID=cds-WP_038272332.1;Parent=gene-LPH40_RS06250;Dbxref=Genbank:WP_038272332.1;Name=WP_038272332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852672.1;locus_tag=LPH40_RS06250;product=exodeoxyribonuclease III;protein_id=WP_038272332.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1560352 1561881 . + . ID=gene-LPH40_RS06255;Name=LPH40_RS06255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06255;old_locus_tag=LPH40_06255 NZ_CP087685.1 Protein Homology CDS 1560352 1561881 . + 0 ID=cds-WP_038272331.1;Parent=gene-LPH40_RS06255;Dbxref=Genbank:WP_038272331.1;Name=WP_038272331.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852671.1;locus_tag=LPH40_RS06255;product=MFS transporter;protein_id=WP_038272331.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1562034 1563167 . - . ID=gene-LPH40_RS06260;Name=LPH40_RS06260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06260;old_locus_tag=LPH40_06260 NZ_CP087685.1 Protein Homology CDS 1562034 1563167 . - 0 ID=cds-WP_038272403.1;Parent=gene-LPH40_RS06260;Dbxref=Genbank:WP_038272403.1;Name=WP_038272403.1;Ontology_term=GO:0006040,GO:0009254,GO:0005524,GO:0016773;gbkey=CDS;go_function=ATP binding|0005524||IEA,phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;go_process=amino sugar metabolic process|0006040||IEA,peptidoglycan turnover|0009254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348848.1;locus_tag=LPH40_RS06260;product=anhydro-N-acetylmuramic acid kinase;protein_id=WP_038272403.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1563255 1564667 . - . ID=gene-LPH40_RS06265;Name=LPH40_RS06265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06265;old_locus_tag=LPH40_06265 NZ_CP087685.1 Protein Homology CDS 1563255 1564667 . - 0 ID=cds-WP_038272330.1;Parent=gene-LPH40_RS06265;Dbxref=Genbank:WP_038272330.1;Name=WP_038272330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337570.1;locus_tag=LPH40_RS06265;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=WP_038272330.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1564844 1566064 . + . ID=gene-LPH40_RS06270;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=LPH40_RS06270;old_locus_tag=LPH40_06270 NZ_CP087685.1 Protein Homology CDS 1564844 1566064 . + 0 ID=cds-WP_038272327.1;Parent=gene-LPH40_RS06270;Dbxref=Genbank:WP_038272327.1;Name=WP_038272327.1;Ontology_term=GO:0006437,GO:0004831,GO:0005737;gbkey=CDS;gene=tyrS;go_component=cytoplasm|0005737||IEA;go_function=tyrosine-tRNA ligase activity|0004831||IEA;go_process=tyrosyl-tRNA aminoacylation|0006437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087787.1;locus_tag=LPH40_RS06270;product=tyrosine--tRNA ligase;protein_id=WP_038272327.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1566844 1568388 . + . ID=gene-LPH40_RS06275;Name=LPH40_RS06275;gbkey=Gene;gene_biotype=rRNA;locus_tag=LPH40_RS06275;old_locus_tag=LPH40_06275 NZ_CP087685.1 cmsearch rRNA 1566844 1568388 . + . ID=rna-LPH40_RS06275;Parent=gene-LPH40_RS06275;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS06275;product=16S ribosomal RNA NZ_CP087685.1 cmsearch exon 1566844 1568388 . + . ID=exon-LPH40_RS06275-1;Parent=rna-LPH40_RS06275;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS06275;product=16S ribosomal RNA NZ_CP087685.1 RefSeq gene 1568483 1568558 . + . ID=gene-LPH40_RS06280;Name=LPH40_RS06280;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS06280;old_locus_tag=LPH40_06280 NZ_CP087685.1 tRNAscan-SE tRNA 1568483 1568558 . + . ID=rna-LPH40_RS06280;Parent=gene-LPH40_RS06280;anticodon=(pos:1568516..1568518);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06280;product=tRNA-Ala NZ_CP087685.1 tRNAscan-SE exon 1568483 1568558 . + . ID=exon-LPH40_RS06280-1;Parent=rna-LPH40_RS06280;anticodon=(pos:1568516..1568518);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06280;product=tRNA-Ala NZ_CP087685.1 RefSeq gene 1568570 1568646 . + . ID=gene-LPH40_RS06285;Name=LPH40_RS06285;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS06285;old_locus_tag=LPH40_06285 NZ_CP087685.1 tRNAscan-SE tRNA 1568570 1568646 . + . ID=rna-LPH40_RS06285;Parent=gene-LPH40_RS06285;anticodon=(pos:1568604..1568606);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06285;product=tRNA-Ile NZ_CP087685.1 tRNAscan-SE exon 1568570 1568646 . + . ID=exon-LPH40_RS06285-1;Parent=rna-LPH40_RS06285;anticodon=(pos:1568604..1568606);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06285;product=tRNA-Ile NZ_CP087685.1 RefSeq gene 1568865 1571646 . + . ID=gene-LPH40_RS06290;Name=LPH40_RS06290;gbkey=Gene;gene_biotype=rRNA;locus_tag=LPH40_RS06290;old_locus_tag=LPH40_06290 NZ_CP087685.1 cmsearch rRNA 1568865 1571646 . + . ID=rna-LPH40_RS06290;Parent=gene-LPH40_RS06290;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS06290;product=23S ribosomal RNA NZ_CP087685.1 cmsearch exon 1568865 1571646 . + . ID=exon-LPH40_RS06290-1;Parent=rna-LPH40_RS06290;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS06290;product=23S ribosomal RNA NZ_CP087685.1 RefSeq gene 1571777 1571890 . + . ID=gene-LPH40_RS06295;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=LPH40_RS06295;old_locus_tag=LPH40_06295 NZ_CP087685.1 cmsearch rRNA 1571777 1571890 . + . ID=rna-LPH40_RS06295;Parent=gene-LPH40_RS06295;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS06295;product=5S ribosomal RNA NZ_CP087685.1 cmsearch exon 1571777 1571890 . + . ID=exon-LPH40_RS06295-1;Parent=rna-LPH40_RS06295;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS06295;product=5S ribosomal RNA NZ_CP087685.1 RefSeq gene 1572041 1572856 . + . ID=gene-LPH40_RS06300;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=LPH40_RS06300;old_locus_tag=LPH40_06300 NZ_CP087685.1 Protein Homology CDS 1572041 1572856 . + 0 ID=cds-WP_038273054.1-2;Parent=gene-LPH40_RS06300;Dbxref=Genbank:WP_038273054.1;Name=WP_038273054.1;Ontology_term=GO:0006281,GO:0006284,GO:0003676,GO:0003684,GO:0003906,GO:0008270,GO:0008534,GO:0016799,GO:0019104;gbkey=CDS;gene=mutM;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA,zinc ion binding|0008270||IEA,oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA,DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA,base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085054.1;locus_tag=LPH40_RS06300;product=bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase;protein_id=WP_038273054.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1572959 1573723 . - . ID=gene-LPH40_RS06305;Name=ccsA;gbkey=Gene;gene=ccsA;gene_biotype=protein_coding;locus_tag=LPH40_RS06305;old_locus_tag=LPH40_06305 NZ_CP087685.1 Protein Homology CDS 1572959 1573723 . - 0 ID=cds-WP_038273056.1-2;Parent=gene-LPH40_RS06305;Dbxref=Genbank:WP_038273056.1;Name=WP_038273056.1;Ontology_term=GO:0017004,GO:0020037;gbkey=CDS;gene=ccsA;go_function=heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085053.1;locus_tag=LPH40_RS06305;product=cytochrome c biogenesis protein CcsA;protein_id=WP_038273056.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1574290 1576167 . + . ID=gene-LPH40_RS06310;Name=LPH40_RS06310;end_range=1576167,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS06310;old_locus_tag=LPH40_06310;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1574290 1576167 . + 0 ID=cds-LPH40_RS06310;Parent=gene-LPH40_RS06310;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1576167,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087191.1;locus_tag=LPH40_RS06310;partial=true;product=DUF885 family protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1577231 1577455 . - . ID=gene-LPH40_RS06315;Name=LPH40_RS06315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06315;old_locus_tag=LPH40_06315 NZ_CP087685.1 GeneMarkS-2+ CDS 1577231 1577455 . - 0 ID=cds-WP_162814079.1;Parent=gene-LPH40_RS06315;Dbxref=Genbank:WP_162814079.1;Name=WP_162814079.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06315;product=hypothetical protein;protein_id=WP_162814079.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1577783 1577950 . + . ID=gene-LPH40_RS06320;Name=LPH40_RS06320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06320;old_locus_tag=LPH40_06320 NZ_CP087685.1 GeneMarkS-2+ CDS 1577783 1577950 . + 0 ID=cds-WP_160165163.1;Parent=gene-LPH40_RS06320;Dbxref=Genbank:WP_160165163.1;Name=WP_160165163.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06320;product=hypothetical protein;protein_id=WP_160165163.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1579827 1580567 . - . ID=gene-LPH40_RS06325;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=LPH40_RS06325;old_locus_tag=LPH40_06325 NZ_CP087685.1 Protein Homology CDS 1579827 1580567 . - 0 ID=cds-WP_038271021.1;Parent=gene-LPH40_RS06325;Dbxref=Genbank:WP_038271021.1;Name=WP_038271021.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fabG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017909512.1;locus_tag=LPH40_RS06325;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_038271021.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1582467 1584071 . + . ID=gene-LPH40_RS06330;Name=LPH40_RS06330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06330;old_locus_tag=LPH40_06330 NZ_CP087685.1 Protein Homology CDS 1582467 1584071 . + 0 ID=cds-WP_038271116.1;Parent=gene-LPH40_RS06330;Dbxref=Genbank:WP_038271116.1;Name=WP_038271116.1;Ontology_term=GO:0006415,GO:0003924;gbkey=CDS;go_function=GTPase activity|0003924||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085050.1;locus_tag=LPH40_RS06330;product=peptide chain release factor 3;protein_id=WP_038271116.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1584152 1584796 . + . ID=gene-LPH40_RS06335;Name=LPH40_RS06335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06335;old_locus_tag=LPH40_06335 NZ_CP087685.1 Protein Homology CDS 1584152 1584796 . + 0 ID=cds-WP_038271024.1;Parent=gene-LPH40_RS06335;Dbxref=Genbank:WP_038271024.1;Name=WP_038271024.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301897.1;locus_tag=LPH40_RS06335;product=hemolysin III family protein;protein_id=WP_038271024.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1585515 1586528 . - . ID=gene-LPH40_RS06340;Name=LPH40_RS06340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06340;old_locus_tag=LPH40_06340 NZ_CP087685.1 Protein Homology CDS 1585515 1586528 . - 0 ID=cds-WP_038271025.1;Parent=gene-LPH40_RS06340;Dbxref=Genbank:WP_038271025.1;Name=WP_038271025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097517.1;locus_tag=LPH40_RS06340;product=glycosyltransferase family 2 protein;protein_id=WP_038271025.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1587707 1588489 . - . ID=gene-LPH40_RS06345;Name=LPH40_RS06345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06345;old_locus_tag=LPH40_06345 NZ_CP087685.1 Protein Homology CDS 1587707 1588489 . - 0 ID=cds-WP_038271027.1;Parent=gene-LPH40_RS06345;Dbxref=Genbank:WP_038271027.1;Name=WP_038271027.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087182.1;locus_tag=LPH40_RS06345;product=TatD family hydrolase;protein_id=WP_038271027.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1588827 1589597 . + . ID=gene-LPH40_RS06350;Name=LPH40_RS06350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06350;old_locus_tag=LPH40_06350 NZ_CP087685.1 Protein Homology CDS 1588827 1589597 . + 0 ID=cds-WP_038271029.1;Parent=gene-LPH40_RS06350;Dbxref=Genbank:WP_038271029.1;Name=WP_038271029.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087181.1;locus_tag=LPH40_RS06350;product=glycine zipper 2TM domain-containing protein;protein_id=WP_038271029.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1591073 1591465 . - . ID=gene-LPH40_RS06355;Name=LPH40_RS06355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06355;old_locus_tag=LPH40_06355 NZ_CP087685.1 Protein Homology CDS 1591073 1591465 . - 0 ID=cds-WP_038271030.1;Parent=gene-LPH40_RS06355;Dbxref=Genbank:WP_038271030.1;Name=WP_038271030.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005933739.1;locus_tag=LPH40_RS06355;product=hypothetical protein;protein_id=WP_038271030.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1592820 1593215 . - . ID=gene-LPH40_RS06360;Name=gcvH;gbkey=Gene;gene=gcvH;gene_biotype=protein_coding;locus_tag=LPH40_RS06360;old_locus_tag=LPH40_06360 NZ_CP087685.1 Protein Homology CDS 1592820 1593215 . - 0 ID=cds-WP_038271031.1;Parent=gene-LPH40_RS06360;Dbxref=Genbank:WP_038271031.1;Name=WP_038271031.1;Ontology_term=GO:0019464,GO:0003824;gbkey=CDS;gene=gcvH;go_function=catalytic activity|0003824||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087179.1;locus_tag=LPH40_RS06360;product=glycine cleavage system protein GcvH;protein_id=WP_038271031.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1593982 1595088 . - . ID=gene-LPH40_RS06365;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=LPH40_RS06365;old_locus_tag=LPH40_06365 NZ_CP087685.1 Protein Homology CDS 1593982 1595088 . - 0 ID=cds-WP_038271032.1;Parent=gene-LPH40_RS06365;Dbxref=Genbank:WP_038271032.1;Name=WP_038271032.1;Ontology_term=GO:0019464,GO:0004047,GO:0005737;gbkey=CDS;gene=gcvT;go_component=cytoplasm|0005737||IEA;go_function=aminomethyltransferase activity|0004047||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851419.1;locus_tag=LPH40_RS06365;product=glycine cleavage system aminomethyltransferase GcvT;protein_id=WP_038271032.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1595241 1595678 . - . ID=gene-LPH40_RS06370;Name=LPH40_RS06370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06370;old_locus_tag=LPH40_06370 NZ_CP087685.1 Protein Homology CDS 1595241 1595678 . - 0 ID=cds-WP_038271033.1;Parent=gene-LPH40_RS06370;Dbxref=Genbank:WP_038271033.1;Name=WP_038271033.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010343187.1;locus_tag=LPH40_RS06370;product=NfeD family protein;protein_id=WP_038271033.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1595682 1596638 . - . ID=gene-LPH40_RS06375;Name=LPH40_RS06375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06375;old_locus_tag=LPH40_06375 NZ_CP087685.1 Protein Homology CDS 1595682 1596638 . - 0 ID=cds-WP_038271034.1;Parent=gene-LPH40_RS06375;Dbxref=Genbank:WP_038271034.1;Name=WP_038271034.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087172.1;locus_tag=LPH40_RS06375;product=SPFH/Band 7/PHB domain protein;protein_id=WP_038271034.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1597321 1598154 . - . ID=gene-LPH40_RS06380;Name=mazG;gbkey=Gene;gene=mazG;gene_biotype=protein_coding;locus_tag=LPH40_RS06380;old_locus_tag=LPH40_06380 NZ_CP087685.1 Protein Homology CDS 1597321 1598154 . - 0 ID=cds-WP_038271035.1;Parent=gene-LPH40_RS06380;Dbxref=Genbank:WP_038271035.1;Name=WP_038271035.1;gbkey=CDS;gene=mazG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087170.1;locus_tag=LPH40_RS06380;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_038271035.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1598187 1598987 . - . ID=gene-LPH40_RS06385;Name=cysQ;gbkey=Gene;gene=cysQ;gene_biotype=protein_coding;locus_tag=LPH40_RS06385;old_locus_tag=LPH40_06385 NZ_CP087685.1 Protein Homology CDS 1598187 1598987 . - 0 ID=cds-WP_038271037.1;Parent=gene-LPH40_RS06385;Dbxref=Genbank:WP_038271037.1;Name=WP_038271037.1;Ontology_term=GO:0006790,GO:0008441;gbkey=CDS;gene=cysQ;go_function=3'(2')%2C5'-bisphosphate nucleotidase activity|0008441||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811298.1;locus_tag=LPH40_RS06385;product=3'(2')%2C5'-bisphosphate nucleotidase CysQ;protein_id=WP_038271037.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1598984 1599532 . - . ID=gene-LPH40_RS06390;Name=nudE;gbkey=Gene;gene=nudE;gene_biotype=protein_coding;locus_tag=LPH40_RS06390;old_locus_tag=LPH40_06390 NZ_CP087685.1 Protein Homology CDS 1598984 1599532 . - 0 ID=cds-WP_038271039.1;Parent=gene-LPH40_RS06390;Dbxref=Genbank:WP_038271039.1;Name=WP_038271039.1;Ontology_term=GO:0016787;gbkey=CDS;gene=nudE;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382420.1;locus_tag=LPH40_RS06390;product=ADP compounds hydrolase NudE;protein_id=WP_038271039.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1599601 1601025 . + . ID=gene-LPH40_RS06395;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;locus_tag=LPH40_RS06395;old_locus_tag=LPH40_06395 NZ_CP087685.1 Protein Homology CDS 1599601 1601025 . + 0 ID=cds-WP_038271040.1;Parent=gene-LPH40_RS06395;Dbxref=Genbank:WP_038271040.1;Name=WP_038271040.1;Ontology_term=GO:0009102,GO:0004015;gbkey=CDS;gene=bioA;go_function=adenosylmethionine-8-amino-7-oxononanoate transaminase activity|0004015||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382421.1;locus_tag=LPH40_RS06395;product=adenosylmethionine--8-amino-7-oxononanoate transaminase;protein_id=WP_038271040.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1601016 1601750 . + . ID=gene-LPH40_RS06400;Name=LPH40_RS06400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06400;old_locus_tag=LPH40_06400 NZ_CP087685.1 Protein Homology CDS 1601016 1601750 . + 0 ID=cds-WP_038271042.1;Parent=gene-LPH40_RS06400;Dbxref=Genbank:WP_038271042.1;Name=WP_038271042.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931477.1;locus_tag=LPH40_RS06400;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;protein_id=WP_038271042.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1602760 1602909 . + . ID=gene-LPH40_RS06405;Name=LPH40_RS06405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06405;old_locus_tag=LPH40_06405 NZ_CP087685.1 GeneMarkS-2+ CDS 1602760 1602909 . + 0 ID=cds-WP_160165164.1;Parent=gene-LPH40_RS06405;Dbxref=Genbank:WP_160165164.1;Name=WP_160165164.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06405;product=hypothetical protein;protein_id=WP_160165164.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1603960 1605300 . + . ID=gene-LPH40_RS06410;Name=LPH40_RS06410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06410;old_locus_tag=LPH40_06410 NZ_CP087685.1 Protein Homology CDS 1603960 1605300 . + 0 ID=cds-WP_038271043.1;Parent=gene-LPH40_RS06410;Dbxref=Genbank:WP_038271043.1;Name=WP_038271043.1;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572992.1;locus_tag=LPH40_RS06410;product=DEAD/DEAH box helicase;protein_id=WP_038271043.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1605375 1605728 . + . ID=gene-LPH40_RS06415;Name=queD;gbkey=Gene;gene=queD;gene_biotype=protein_coding;locus_tag=LPH40_RS06415;old_locus_tag=LPH40_06415 NZ_CP087685.1 Protein Homology CDS 1605375 1605728 . + 0 ID=cds-WP_038271045.1;Parent=gene-LPH40_RS06415;Dbxref=Genbank:WP_038271045.1;Name=WP_038271045.1;Ontology_term=GO:0008616,GO:0003824;gbkey=CDS;gene=queD;go_function=catalytic activity|0003824||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572991.1;locus_tag=LPH40_RS06415;product=6-carboxytetrahydropterin synthase QueD;protein_id=WP_038271045.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1607705 1608226 . - . ID=gene-LPH40_RS06420;Name=LPH40_RS06420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06420;old_locus_tag=LPH40_06420 NZ_CP087685.1 Protein Homology CDS 1607705 1608226 . - 0 ID=cds-WP_038271117.1;Parent=gene-LPH40_RS06420;Dbxref=Genbank:WP_038271117.1;Name=WP_038271117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572990.1;locus_tag=LPH40_RS06420;product=DUF2059 domain-containing protein;protein_id=WP_038271117.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1608645 1609274 . + . ID=gene-LPH40_RS06425;Name=LPH40_RS06425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06425;old_locus_tag=LPH40_06425 NZ_CP087685.1 Protein Homology CDS 1608645 1609274 . + 0 ID=cds-WP_038271049.1;Parent=gene-LPH40_RS06425;Dbxref=Genbank:WP_038271049.1;Name=WP_038271049.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035483.1;locus_tag=LPH40_RS06425;product=lysophospholipid acyltransferase family protein;protein_id=WP_038271049.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1610395 1611084 . - . ID=gene-LPH40_RS06430;Name=LPH40_RS06430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06430;old_locus_tag=LPH40_06430 NZ_CP087685.1 Protein Homology CDS 1610395 1611084 . - 0 ID=cds-WP_038271051.1;Parent=gene-LPH40_RS06430;Dbxref=Genbank:WP_038271051.1;Name=WP_038271051.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003467120.1;locus_tag=LPH40_RS06430;product=DUF502 domain-containing protein;protein_id=WP_038271051.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1611892 1612482 . - . ID=gene-LPH40_RS06435;Name=LPH40_RS06435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06435;old_locus_tag=LPH40_06435 NZ_CP087685.1 Protein Homology CDS 1611892 1612482 . - 0 ID=cds-WP_038271053.1;Parent=gene-LPH40_RS06435;Dbxref=Genbank:WP_038271053.1;Name=WP_038271053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851431.1;locus_tag=LPH40_RS06435;product=class I SAM-dependent methyltransferase;protein_id=WP_038271053.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1612556 1613008 . + . ID=gene-LPH40_RS06440;Name=LPH40_RS06440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06440;old_locus_tag=LPH40_06440 NZ_CP087685.1 Protein Homology CDS 1612556 1613008 . + 0 ID=cds-WP_038271055.1;Parent=gene-LPH40_RS06440;Dbxref=Genbank:WP_038271055.1;Name=WP_038271055.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902407.1;locus_tag=LPH40_RS06440;product=CopD family protein;protein_id=WP_038271055.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1613175 1614134 . - . ID=gene-LPH40_RS06445;Name=LPH40_RS06445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06445;old_locus_tag=LPH40_06445 NZ_CP087685.1 Protein Homology CDS 1613175 1614134 . - 0 ID=cds-WP_038271056.1;Parent=gene-LPH40_RS06445;Dbxref=Genbank:WP_038271056.1;Name=WP_038271056.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008578271.1;locus_tag=LPH40_RS06445;product=acetyl-CoA carboxylase carboxyltransferase subunit alpha;protein_id=WP_038271056.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1614229 1617810 . - . ID=gene-LPH40_RS06450;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=LPH40_RS06450;old_locus_tag=LPH40_06450 NZ_CP087685.1 Protein Homology CDS 1614229 1617810 . - 0 ID=cds-WP_038271057.1;Parent=gene-LPH40_RS06450;Dbxref=Genbank:WP_038271057.1;Name=WP_038271057.1;Ontology_term=GO:0006260,GO:0003676,GO:0008408;gbkey=CDS;gene=dnaE;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572983.1;locus_tag=LPH40_RS06450;product=DNA polymerase III subunit alpha;protein_id=WP_038271057.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1618309 1619235 . - . ID=gene-LPH40_RS06455;Name=LPH40_RS06455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06455;old_locus_tag=LPH40_06455 NZ_CP087685.1 Protein Homology CDS 1618309 1619235 . - 0 ID=cds-WP_038271058.1;Parent=gene-LPH40_RS06455;Dbxref=Genbank:WP_038271058.1;Name=WP_038271058.1;Ontology_term=GO:0006164,GO:0004639;gbkey=CDS;go_function=phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|0004639||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448471.1;locus_tag=LPH40_RS06455;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=WP_038271058.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1619728 1620057 . + . ID=gene-LPH40_RS06460;Name=LPH40_RS06460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06460;old_locus_tag=LPH40_06460 NZ_CP087685.1 Protein Homology CDS 1619728 1620057 . + 0 ID=cds-WP_038271059.1;Parent=gene-LPH40_RS06460;Dbxref=Genbank:WP_038271059.1;Name=WP_038271059.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157937.1;locus_tag=LPH40_RS06460;product=DnaJ domain-containing protein;protein_id=WP_038271059.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1620107 1620778 . + . ID=gene-LPH40_RS06465;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=LPH40_RS06465;old_locus_tag=LPH40_06465 NZ_CP087685.1 Protein Homology CDS 1620107 1620778 . + 0 ID=cds-WP_038271118.1;Parent=gene-LPH40_RS06465;Dbxref=Genbank:WP_038271118.1;Name=WP_038271118.1;Ontology_term=GO:0006098,GO:0004750;gbkey=CDS;gene=rpe;go_function=D-ribulose-phosphate 3-epimerase activity|0004750||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379428.1;locus_tag=LPH40_RS06465;product=ribulose-phosphate 3-epimerase;protein_id=WP_038271118.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1621891 1622304 . - . ID=gene-LPH40_RS06470;Name=LPH40_RS06470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06470;old_locus_tag=LPH40_06470 NZ_CP087685.1 GeneMarkS-2+ CDS 1621891 1622304 . - 0 ID=cds-WP_160165165.1;Parent=gene-LPH40_RS06470;Dbxref=Genbank:WP_160165165.1;Name=WP_160165165.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06470;product=hypothetical protein;protein_id=WP_160165165.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1623450 1624925 . + . ID=gene-LPH40_RS06475;Name=trpE;gbkey=Gene;gene=trpE;gene_biotype=protein_coding;locus_tag=LPH40_RS06475;old_locus_tag=LPH40_06475 NZ_CP087685.1 Protein Homology CDS 1623450 1624925 . + 0 ID=cds-WP_038271061.1;Parent=gene-LPH40_RS06475;Dbxref=Genbank:WP_038271061.1;Name=WP_038271061.1;Ontology_term=GO:0000162,GO:0004049;gbkey=CDS;gene=trpE;go_function=anthranilate synthase activity|0004049||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575582.1;locus_tag=LPH40_RS06475;product=anthranilate synthase component I;protein_id=WP_038271061.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1625106 1625690 . + . ID=gene-LPH40_RS06480;Name=LPH40_RS06480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06480;old_locus_tag=LPH40_06480 NZ_CP087685.1 Protein Homology CDS 1625106 1625690 . + 0 ID=cds-WP_038271062.1;Parent=gene-LPH40_RS06480;Dbxref=Genbank:WP_038271062.1;Name=WP_038271062.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892752.1;locus_tag=LPH40_RS06480;product=aminodeoxychorismate/anthranilate synthase component II;protein_id=WP_038271062.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1625757 1626791 . + . ID=gene-LPH40_RS06485;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;locus_tag=LPH40_RS06485;old_locus_tag=LPH40_06485 NZ_CP087685.1 Protein Homology CDS 1625757 1626791 . + 0 ID=cds-WP_038271063.1;Parent=gene-LPH40_RS06485;Dbxref=Genbank:WP_038271063.1;Name=WP_038271063.1;Ontology_term=GO:0000162,GO:0004048;gbkey=CDS;gene=trpD;go_function=anthranilate phosphoribosyltransferase activity|0004048||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572976.1;locus_tag=LPH40_RS06485;product=anthranilate phosphoribosyltransferase;protein_id=WP_038271063.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1626868 1627662 . + . ID=gene-LPH40_RS06490;Name=trpC;gbkey=Gene;gene=trpC;gene_biotype=protein_coding;locus_tag=LPH40_RS06490;old_locus_tag=LPH40_06490 NZ_CP087685.1 Protein Homology CDS 1626868 1627662 . + 0 ID=cds-WP_038271064.1;Parent=gene-LPH40_RS06490;Dbxref=Genbank:WP_038271064.1;Name=WP_038271064.1;Ontology_term=GO:0006568,GO:0004425;gbkey=CDS;gene=trpC;go_function=indole-3-glycerol-phosphate synthase activity|0004425||IEA;go_process=tryptophan metabolic process|0006568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003470238.1;locus_tag=LPH40_RS06490;product=indole-3-glycerol phosphate synthase TrpC;protein_id=WP_038271064.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1627659 1628375 . + . ID=gene-LPH40_RS06495;Name=LPH40_RS06495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06495;old_locus_tag=LPH40_06495 NZ_CP087685.1 Protein Homology CDS 1627659 1628375 . + 0 ID=cds-WP_038271065.1;Parent=gene-LPH40_RS06495;Dbxref=Genbank:WP_038271065.1;Name=WP_038271065.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097528.1;locus_tag=LPH40_RS06495;product=haloacid dehalogenase-like hydrolase;protein_id=WP_038271065.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1629418 1629924 . + . ID=gene-LPH40_RS06500;Name=LPH40_RS06500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06500;old_locus_tag=LPH40_06500 NZ_CP087685.1 Protein Homology CDS 1629418 1629924 . + 0 ID=cds-WP_038271119.1;Parent=gene-LPH40_RS06500;Dbxref=Genbank:WP_038271119.1;Name=WP_038271119.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852326.1;locus_tag=LPH40_RS06500;product=MarR family transcriptional regulator;protein_id=WP_038271119.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1630656 1631669 . - . ID=gene-LPH40_RS06505;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=LPH40_RS06505;old_locus_tag=LPH40_06505 NZ_CP087685.1 Protein Homology CDS 1630656 1631669 . - 0 ID=cds-WP_038271066.1;Parent=gene-LPH40_RS06505;Dbxref=Genbank:WP_038271066.1;Name=WP_038271066.1;Ontology_term=GO:0015415,GO:0042301,GO:0009897,GO:0030288,GO:0055052;gbkey=CDS;gene=pstS;go_component=external side of plasma membrane|0009897||IEA,outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA,phosphate ion binding|0042301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017910159.1;locus_tag=LPH40_RS06505;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=WP_038271066.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1631907 1633139 . + . ID=gene-LPH40_RS06510;Name=LPH40_RS06510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06510;old_locus_tag=LPH40_06510 NZ_CP087685.1 Protein Homology CDS 1631907 1633139 . + 0 ID=cds-WP_038271067.1;Parent=gene-LPH40_RS06510;Dbxref=Genbank:WP_038271067.1;Name=WP_038271067.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014646541.1;locus_tag=LPH40_RS06510;product=porin;protein_id=WP_038271067.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1634239 1634314 . - . ID=gene-LPH40_RS06515;Name=LPH40_RS06515;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS06515;old_locus_tag=LPH40_06515 NZ_CP087685.1 tRNAscan-SE tRNA 1634239 1634314 . - . ID=rna-LPH40_RS06515;Parent=gene-LPH40_RS06515;anticodon=(pos:complement(1634279..1634281));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06515;product=tRNA-Ala NZ_CP087685.1 tRNAscan-SE exon 1634239 1634314 . - . ID=exon-LPH40_RS06515-1;Parent=rna-LPH40_RS06515;anticodon=(pos:complement(1634279..1634281));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06515;product=tRNA-Ala NZ_CP087685.1 RefSeq gene 1635572 1635832 . + . ID=gene-LPH40_RS06520;Name=LPH40_RS06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06520;old_locus_tag=LPH40_06520 NZ_CP087685.1 Protein Homology CDS 1635572 1635832 . + 0 ID=cds-WP_152536604.1;Parent=gene-LPH40_RS06520;Dbxref=Genbank:WP_152536604.1;Name=WP_152536604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382425.1;locus_tag=LPH40_RS06520;product=hypothetical protein;protein_id=WP_152536604.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1635829 1637031 . + . ID=gene-LPH40_RS06525;Name=LPH40_RS06525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06525;old_locus_tag=LPH40_06525 NZ_CP087685.1 Protein Homology CDS 1635829 1637031 . + 0 ID=cds-WP_038271069.1;Parent=gene-LPH40_RS06525;Dbxref=Genbank:WP_038271069.1;Name=WP_038271069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086294.1;locus_tag=LPH40_RS06525;product=Xaa-Pro peptidase family protein;protein_id=WP_038271069.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1637219 1639042 . + . ID=gene-LPH40_RS06530;Name=LPH40_RS06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06530;old_locus_tag=LPH40_06530 NZ_CP087685.1 Protein Homology CDS 1637219 1639042 . + 0 ID=cds-WP_038271070.1;Parent=gene-LPH40_RS06530;Dbxref=Genbank:WP_038271070.1;Name=WP_038271070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920338.1;locus_tag=LPH40_RS06530;product=DUF885 family protein;protein_id=WP_038271070.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1639039 1639170 . + . ID=gene-LPH40_RS12005;Name=LPH40_RS12005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS12005 NZ_CP087685.1 GeneMarkS-2+ CDS 1639039 1639170 . + 0 ID=cds-WP_267903165.1;Parent=gene-LPH40_RS12005;Dbxref=Genbank:WP_267903165.1;Name=WP_267903165.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS12005;product=hypothetical protein;protein_id=WP_267903165.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1639231 1640056 . + . ID=gene-LPH40_RS06535;Name=LPH40_RS06535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS06535;old_locus_tag=LPH40_06535;pseudo=true NZ_CP087685.1 Protein Homology CDS 1639231 1640056 . + 0 ID=cds-LPH40_RS06535;Parent=gene-LPH40_RS06535;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892763.1;locus_tag=LPH40_RS06535;product=DUF885 family protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1640505 1641647 . + . ID=gene-LPH40_RS06540;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=LPH40_RS06540;old_locus_tag=LPH40_06540 NZ_CP087685.1 Protein Homology CDS 1640505 1641647 . + 0 ID=cds-WP_038271073.1;Parent=gene-LPH40_RS06540;Dbxref=Genbank:WP_038271073.1;Name=WP_038271073.1;Ontology_term=GO:0006400,GO:0008479,GO:0005737;gbkey=CDS;gene=tgt;go_component=cytoplasm|0005737||IEA;go_function=queuine tRNA-ribosyltransferase activity|0008479||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086289.1;locus_tag=LPH40_RS06540;product=tRNA guanosine(34) transglycosylase Tgt;protein_id=WP_038271073.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1641770 1642120 . + . ID=gene-LPH40_RS06545;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=LPH40_RS06545;old_locus_tag=LPH40_06545 NZ_CP087685.1 Protein Homology CDS 1641770 1642120 . + 0 ID=cds-WP_038271074.1;Parent=gene-LPH40_RS06545;Dbxref=Genbank:WP_038271074.1;Name=WP_038271074.1;Ontology_term=GO:0009306,GO:0015450,GO:0005886;gbkey=CDS;gene=yajC;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014036867.1;locus_tag=LPH40_RS06545;product=preprotein translocase subunit YajC;protein_id=WP_038271074.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1642187 1644031 . + . ID=gene-LPH40_RS06550;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=LPH40_RS06550;old_locus_tag=LPH40_06550 NZ_CP087685.1 Protein Homology CDS 1642187 1644031 . + 0 ID=cds-WP_038271120.1;Parent=gene-LPH40_RS06550;Dbxref=Genbank:WP_038271120.1;Name=WP_038271120.1;Ontology_term=GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secD;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917104.1;locus_tag=LPH40_RS06550;product=protein translocase subunit SecD;protein_id=WP_038271120.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1644051 1645016 . + . ID=gene-LPH40_RS06555;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=LPH40_RS06555;old_locus_tag=LPH40_06555 NZ_CP087685.1 Protein Homology CDS 1644051 1645016 . + 0 ID=cds-WP_038271076.1;Parent=gene-LPH40_RS06555;Dbxref=Genbank:WP_038271076.1;Name=WP_038271076.1;Ontology_term=GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secF;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438079.1;locus_tag=LPH40_RS06555;product=protein translocase subunit SecF;protein_id=WP_038271076.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1645177 1645251 . - . ID=gene-LPH40_RS06560;Name=LPH40_RS06560;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS06560;old_locus_tag=LPH40_06560 NZ_CP087685.1 tRNAscan-SE tRNA 1645177 1645251 . - . ID=rna-LPH40_RS06560;Parent=gene-LPH40_RS06560;anticodon=(pos:complement(1645216..1645218));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06560;product=tRNA-Glu NZ_CP087685.1 tRNAscan-SE exon 1645177 1645251 . - . ID=exon-LPH40_RS06560-1;Parent=rna-LPH40_RS06560;anticodon=(pos:complement(1645216..1645218));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06560;product=tRNA-Glu NZ_CP087685.1 RefSeq gene 1645333 1646601 . + . ID=gene-LPH40_RS06565;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=LPH40_RS06565;old_locus_tag=LPH40_06565 NZ_CP087685.1 Protein Homology CDS 1645333 1646601 . + 0 ID=cds-WP_081755429.1;Parent=gene-LPH40_RS06565;Dbxref=Genbank:WP_081755429.1;Name=WP_081755429.1;Ontology_term=GO:0006378,GO:0003723,GO:0004652;gbkey=CDS;gene=pcnB;go_function=RNA binding|0003723||IEA,polynucleotide adenylyltransferase activity|0004652||IEA;go_process=mRNA polyadenylation|0006378||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303731.1;locus_tag=LPH40_RS06565;product=polynucleotide adenylyltransferase PcnB;protein_id=WP_081755429.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1646622 1647113 . + . ID=gene-LPH40_RS06570;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=LPH40_RS06570;old_locus_tag=LPH40_06570 NZ_CP087685.1 Protein Homology CDS 1646622 1647113 . + 0 ID=cds-WP_038271121.1;Parent=gene-LPH40_RS06570;Dbxref=Genbank:WP_038271121.1;Name=WP_038271121.1;Ontology_term=GO:0009396,GO:0003848;gbkey=CDS;gene=folK;go_function=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity|0003848||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097533.1;locus_tag=LPH40_RS06570;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=WP_038271121.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1647146 1647964 . + . ID=gene-LPH40_RS06575;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=LPH40_RS06575;old_locus_tag=LPH40_06575 NZ_CP087685.1 Protein Homology CDS 1647146 1647964 . + 0 ID=cds-WP_038271078.1;Parent=gene-LPH40_RS06575;Dbxref=Genbank:WP_038271078.1;Name=WP_038271078.1;Ontology_term=GO:0015940,GO:0003864;gbkey=CDS;gene=panB;go_function=3-methyl-2-oxobutanoate hydroxymethyltransferase activity|0003864||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408567.1;locus_tag=LPH40_RS06575;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=WP_038271078.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1647961 1648806 . + . ID=gene-LPH40_RS06580;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=LPH40_RS06580;old_locus_tag=LPH40_06580 NZ_CP087685.1 Protein Homology CDS 1647961 1648806 . + 0 ID=cds-WP_038271079.1;Parent=gene-LPH40_RS06580;Dbxref=Genbank:WP_038271079.1;Name=WP_038271079.1;Ontology_term=GO:0015940,GO:0004592;gbkey=CDS;gene=panC;go_function=pantoate-beta-alanine ligase activity|0004592||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259031.1;locus_tag=LPH40_RS06580;product=pantoate--beta-alanine ligase;protein_id=WP_038271079.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1648891 1649271 . + . ID=gene-LPH40_RS06585;Name=LPH40_RS06585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06585;old_locus_tag=LPH40_06585 NZ_CP087685.1 Protein Homology CDS 1648891 1649271 . + 0 ID=cds-WP_038271081.1;Parent=gene-LPH40_RS06585;Dbxref=Genbank:WP_038271081.1;Name=WP_038271081.1;Ontology_term=GO:0006523,GO:0004068;gbkey=CDS;go_function=aspartate 1-decarboxylase activity|0004068||IEA;go_process=alanine biosynthetic process|0006523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036943.1;locus_tag=LPH40_RS06585;product=aspartate 1-decarboxylase;protein_id=WP_038271081.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1649275 1650783 . + . ID=gene-LPH40_RS06590;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=LPH40_RS06590;old_locus_tag=LPH40_06590 NZ_CP087685.1 Protein Homology CDS 1649275 1650783 . + 0 ID=cds-WP_038271082.1;Parent=gene-LPH40_RS06590;Dbxref=Genbank:WP_038271082.1;Name=WP_038271082.1;Ontology_term=GO:0006094,GO:0006096,GO:0004347;gbkey=CDS;gene=pgi;go_function=glucose-6-phosphate isomerase activity|0004347||IEA;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852608.1;locus_tag=LPH40_RS06590;product=glucose-6-phosphate isomerase;protein_id=WP_038271082.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1652676 1652749 . + . ID=gene-LPH40_RS06595;Name=LPH40_RS06595;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS06595;old_locus_tag=LPH40_06595 NZ_CP087685.1 tRNAscan-SE tRNA 1652676 1652749 . + . ID=rna-LPH40_RS06595;Parent=gene-LPH40_RS06595;anticodon=(pos:1652710..1652712);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06595;product=tRNA-Met NZ_CP087685.1 tRNAscan-SE exon 1652676 1652749 . + . ID=exon-LPH40_RS06595-1;Parent=rna-LPH40_RS06595;anticodon=(pos:1652710..1652712);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06595;product=tRNA-Met NZ_CP087685.1 RefSeq gene 1654282 1654872 . + . ID=gene-LPH40_RS06600;Name=rimP;gbkey=Gene;gene=rimP;gene_biotype=protein_coding;locus_tag=LPH40_RS06600;old_locus_tag=LPH40_06600 NZ_CP087685.1 Protein Homology CDS 1654282 1654872 . + 0 ID=cds-WP_038271122.1;Parent=gene-LPH40_RS06600;Dbxref=Genbank:WP_038271122.1;Name=WP_038271122.1;gbkey=CDS;gene=rimP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300413.1;locus_tag=LPH40_RS06600;product=ribosome maturation factor RimP;protein_id=WP_038271122.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1654878 1656389 . + . ID=gene-LPH40_RS06605;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=LPH40_RS06605;old_locus_tag=LPH40_06605 NZ_CP087685.1 Protein Homology CDS 1654878 1656389 . + 0 ID=cds-WP_038271083.1;Parent=gene-LPH40_RS06605;Dbxref=Genbank:WP_038271083.1;Name=WP_038271083.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660577.1;locus_tag=LPH40_RS06605;product=transcription termination factor NusA;protein_id=WP_038271083.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1656486 1659149 . + . ID=gene-LPH40_RS06610;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=LPH40_RS06610;old_locus_tag=LPH40_06610 NZ_CP087685.1 Protein Homology CDS 1656486 1659149 . + 0 ID=cds-WP_038271084.1;Parent=gene-LPH40_RS06610;Dbxref=Genbank:WP_038271084.1;Name=WP_038271084.1;Ontology_term=GO:0006413,GO:0003743,GO:0005737;gbkey=CDS;gene=infB;go_component=cytoplasm|0005737||IEA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159225.1;locus_tag=LPH40_RS06610;product=translation initiation factor IF-2;protein_id=WP_038271084.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1659269 1659646 . + . ID=gene-LPH40_RS06615;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=LPH40_RS06615;old_locus_tag=LPH40_06615 NZ_CP087685.1 Protein Homology CDS 1659269 1659646 . + 0 ID=cds-WP_038271086.1;Parent=gene-LPH40_RS06615;Dbxref=Genbank:WP_038271086.1;Name=WP_038271086.1;Ontology_term=GO:0006396,GO:0019843;gbkey=CDS;gene=rbfA;go_function=rRNA binding|0019843||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892777.1;locus_tag=LPH40_RS06615;product=30S ribosome-binding factor RbfA;protein_id=WP_038271086.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1659743 1660645 . + . ID=gene-LPH40_RS06620;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=LPH40_RS06620;old_locus_tag=LPH40_06620 NZ_CP087685.1 Protein Homology CDS 1659743 1660645 . + 0 ID=cds-WP_038271087.1;Parent=gene-LPH40_RS06620;Dbxref=Genbank:WP_038271087.1;Name=WP_038271087.1;Ontology_term=GO:0006400,GO:0004730;gbkey=CDS;gene=truB;go_function=pseudouridylate synthase activity|0004730||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852611.1;locus_tag=LPH40_RS06620;product=tRNA pseudouridine(55) synthase TruB;protein_id=WP_038271087.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1660824 1661084 . + . ID=gene-LPH40_RS06625;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=LPH40_RS06625;old_locus_tag=LPH40_06625 NZ_CP087685.1 Protein Homology CDS 1660824 1661084 . + 0 ID=cds-WP_038271089.1;Parent=gene-LPH40_RS06625;Dbxref=Genbank:WP_038271089.1;Name=WP_038271089.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsO;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810194.1;locus_tag=LPH40_RS06625;product=30S ribosomal protein S15;protein_id=WP_038271089.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1661238 1663340 . + . ID=gene-LPH40_RS06630;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=LPH40_RS06630;old_locus_tag=LPH40_06630 NZ_CP087685.1 Protein Homology CDS 1661238 1663340 . + 0 ID=cds-WP_038271091.1;Parent=gene-LPH40_RS06630;Dbxref=Genbank:WP_038271091.1;Name=WP_038271091.1;Ontology_term=GO:0006402,GO:0004654;gbkey=CDS;gene=pnp;go_function=polyribonucleotide nucleotidyltransferase activity|0004654||IEA;go_process=mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086257.1;locus_tag=LPH40_RS06630;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_038271091.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1663807 1664238 . - . ID=gene-LPH40_RS06635;Name=LPH40_RS06635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06635;old_locus_tag=LPH40_06635 NZ_CP087685.1 Protein Homology CDS 1663807 1664238 . - 0 ID=cds-WP_038271092.1;Parent=gene-LPH40_RS06635;Dbxref=Genbank:WP_038271092.1;Name=WP_038271092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337583.1;locus_tag=LPH40_RS06635;product=helix-turn-helix domain-containing protein;protein_id=WP_038271092.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1664354 1665235 . + . ID=gene-LPH40_RS06640;Name=LPH40_RS06640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06640;old_locus_tag=LPH40_06640 NZ_CP087685.1 Protein Homology CDS 1664354 1665235 . + 0 ID=cds-WP_038271093.1;Parent=gene-LPH40_RS06640;Dbxref=Genbank:WP_038271093.1;Name=WP_038271093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089089.1;locus_tag=LPH40_RS06640;product=SDR family oxidoreductase;protein_id=WP_038271093.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1666681 1669764 . - . ID=gene-LPH40_RS06645;Name=LPH40_RS06645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06645;old_locus_tag=LPH40_06645 NZ_CP087685.1 Protein Homology CDS 1666681 1669764 . - 0 ID=cds-WP_038271094.1;Parent=gene-LPH40_RS06645;Dbxref=Genbank:WP_038271094.1;Name=WP_038271094.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097539.1;locus_tag=LPH40_RS06645;product=efflux RND transporter permease subunit;protein_id=WP_038271094.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1669761 1670870 . - . ID=gene-LPH40_RS06650;Name=LPH40_RS06650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06650;old_locus_tag=LPH40_06650 NZ_CP087685.1 Protein Homology CDS 1669761 1670870 . - 0 ID=cds-WP_081755432.1;Parent=gene-LPH40_RS06650;Dbxref=Genbank:WP_081755432.1;Name=WP_081755432.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851442.1;locus_tag=LPH40_RS06650;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_081755432.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1671510 1671638 . + . ID=gene-LPH40_RS12010;Name=LPH40_RS12010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS12010 NZ_CP087685.1 GeneMarkS-2+ CDS 1671510 1671638 . + 0 ID=cds-WP_267903166.1;Parent=gene-LPH40_RS12010;Dbxref=Genbank:WP_267903166.1;Name=WP_267903166.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS12010;product=hypothetical protein;protein_id=WP_267903166.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1671796 1672608 . - . ID=gene-LPH40_RS06655;Name=LPH40_RS06655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06655;old_locus_tag=LPH40_06655 NZ_CP087685.1 Protein Homology CDS 1671796 1672608 . - 0 ID=cds-WP_081755431.1;Parent=gene-LPH40_RS06655;Dbxref=Genbank:WP_081755431.1;Name=WP_081755431.1;Ontology_term=GO:0006812,GO:0055085,GO:0015299,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=solute:proton antiporter activity|0015299||IEA;go_process=cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:NF013188.2;locus_tag=LPH40_RS06655;product=cation:proton antiporter;protein_id=WP_081755431.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1673391 1673600 . - . ID=gene-LPH40_RS06660;Name=LPH40_RS06660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06660;old_locus_tag=LPH40_06660 NZ_CP087685.1 GeneMarkS-2+ CDS 1673391 1673600 . - 0 ID=cds-WP_038271095.1;Parent=gene-LPH40_RS06660;Dbxref=Genbank:WP_038271095.1;Name=WP_038271095.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06660;product=hypothetical protein;protein_id=WP_038271095.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1673746 1674645 . + . ID=gene-LPH40_RS06665;Name=LPH40_RS06665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06665;old_locus_tag=LPH40_06665 NZ_CP087685.1 Protein Homology CDS 1673746 1674645 . + 0 ID=cds-WP_171898070.1;Parent=gene-LPH40_RS06665;Dbxref=Genbank:WP_171898070.1;Name=WP_171898070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304048.1;locus_tag=LPH40_RS06665;product=DMT family transporter;protein_id=WP_171898070.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1675375 1675566 . - . ID=gene-LPH40_RS06670;Name=LPH40_RS06670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06670;old_locus_tag=LPH40_06670 NZ_CP087685.1 GeneMarkS-2+ CDS 1675375 1675566 . - 0 ID=cds-WP_114867058.1;Parent=gene-LPH40_RS06670;Dbxref=Genbank:WP_114867058.1;Name=WP_114867058.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06670;product=hypothetical protein;protein_id=WP_114867058.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1676196 1678019 . - . ID=gene-LPH40_RS06675;Name=LPH40_RS06675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06675;old_locus_tag=LPH40_06675 NZ_CP087685.1 Protein Homology CDS 1676196 1678019 . - 0 ID=cds-WP_038271096.1;Parent=gene-LPH40_RS06675;Dbxref=Genbank:WP_038271096.1;Name=WP_038271096.1;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851446.1;locus_tag=LPH40_RS06675;product=DEAD/DEAH box helicase;protein_id=WP_038271096.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1678375 1679322 . - . ID=gene-LPH40_RS06680;Name=LPH40_RS06680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06680;old_locus_tag=LPH40_06680 NZ_CP087685.1 Protein Homology CDS 1678375 1679322 . - 0 ID=cds-WP_038271097.1;Parent=gene-LPH40_RS06680;Dbxref=Genbank:WP_038271097.1;Name=WP_038271097.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449664.1;locus_tag=LPH40_RS06680;product=electron transfer flavoprotein subunit alpha/FixB family protein;protein_id=WP_038271097.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1679319 1680068 . - . ID=gene-LPH40_RS06685;Name=LPH40_RS06685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06685;old_locus_tag=LPH40_06685 NZ_CP087685.1 Protein Homology CDS 1679319 1680068 . - 0 ID=cds-WP_038271098.1;Parent=gene-LPH40_RS06685;Dbxref=Genbank:WP_038271098.1;Name=WP_038271098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086235.1;locus_tag=LPH40_RS06685;product=electron transfer flavoprotein subunit beta/FixA family protein;protein_id=WP_038271098.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1680282 1681337 . + . ID=gene-LPH40_RS06690;Name=rfbB;gbkey=Gene;gene=rfbB;gene_biotype=protein_coding;locus_tag=LPH40_RS06690;old_locus_tag=LPH40_06690 NZ_CP087685.1 Protein Homology CDS 1680282 1681337 . + 0 ID=cds-WP_038271099.1;Parent=gene-LPH40_RS06690;Dbxref=Genbank:WP_038271099.1;Name=WP_038271099.1;Ontology_term=GO:0009243,GO:0019305,GO:0008460;gbkey=CDS;gene=rfbB;go_function=dTDP-glucose 4%2C6-dehydratase activity|0008460||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270013.1;locus_tag=LPH40_RS06690;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_038271099.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1681400 1682287 . + . ID=gene-LPH40_RS06695;Name=rfbA;gbkey=Gene;gene=rfbA;gene_biotype=protein_coding;locus_tag=LPH40_RS06695;old_locus_tag=LPH40_06695 NZ_CP087685.1 Protein Homology CDS 1681400 1682287 . + 0 ID=cds-WP_038271100.1;Parent=gene-LPH40_RS06695;Dbxref=Genbank:WP_038271100.1;Name=WP_038271100.1;Ontology_term=GO:0009243,GO:0019305,GO:0008879;gbkey=CDS;gene=rfbA;go_function=glucose-1-phosphate thymidylyltransferase activity|0008879||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903936.1;locus_tag=LPH40_RS06695;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_038271100.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1682284 1682841 . + . ID=gene-LPH40_RS06700;Name=rfbC;gbkey=Gene;gene=rfbC;gene_biotype=protein_coding;locus_tag=LPH40_RS06700;old_locus_tag=LPH40_06700 NZ_CP087685.1 Protein Homology CDS 1682284 1682841 . + 0 ID=cds-WP_038271101.1;Parent=gene-LPH40_RS06700;Dbxref=Genbank:WP_038271101.1;Name=WP_038271101.1;Ontology_term=GO:0009243,GO:0019305,GO:0008830;gbkey=CDS;gene=rfbC;go_function=dTDP-4-dehydrorhamnose 3%2C5-epimerase activity|0008830||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377788.1;locus_tag=LPH40_RS06700;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=WP_038271101.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1682838 1683746 . + . ID=gene-LPH40_RS06705;Name=rfbD;gbkey=Gene;gene=rfbD;gene_biotype=protein_coding;locus_tag=LPH40_RS06705;old_locus_tag=LPH40_06705 NZ_CP087685.1 Protein Homology CDS 1682838 1683746 . + 0 ID=cds-WP_038271102.1;Parent=gene-LPH40_RS06705;Dbxref=Genbank:WP_038271102.1;Name=WP_038271102.1;Ontology_term=GO:0009243,GO:0019305,GO:0008831;gbkey=CDS;gene=rfbD;go_function=dTDP-4-dehydrorhamnose reductase activity|0008831||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851453.1;locus_tag=LPH40_RS06705;product=dTDP-4-dehydrorhamnose reductase;protein_id=WP_038271102.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1683915 1685318 . - . ID=gene-LPH40_RS06710;Name=LPH40_RS06710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06710;old_locus_tag=LPH40_06710 NZ_CP087685.1 Protein Homology CDS 1683915 1685318 . - 0 ID=cds-WP_038271103.1;Parent=gene-LPH40_RS06710;Dbxref=Genbank:WP_038271103.1;Name=WP_038271103.1;Ontology_term=GO:0009103,GO:0004476;gbkey=CDS;go_function=mannose-6-phosphate isomerase activity|0004476||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850199.1;locus_tag=LPH40_RS06710;product=mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase;protein_id=WP_038271103.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1685378 1686727 . - . ID=gene-LPH40_RS06715;Name=LPH40_RS06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06715;old_locus_tag=LPH40_06715 NZ_CP087685.1 Protein Homology CDS 1685378 1686727 . - 0 ID=cds-WP_038271104.1;Parent=gene-LPH40_RS06715;Dbxref=Genbank:WP_038271104.1;Name=WP_038271104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851455.1;locus_tag=LPH40_RS06715;product=phosphomannomutase/phosphoglucomutase;protein_id=WP_038271104.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1686971 1687384 . - . ID=gene-LPH40_RS06720;Name=LPH40_RS06720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06720;old_locus_tag=LPH40_06720 NZ_CP087685.1 GeneMarkS-2+ CDS 1686971 1687384 . - 0 ID=cds-WP_162814080.1;Parent=gene-LPH40_RS06720;Dbxref=Genbank:WP_162814080.1;Name=WP_162814080.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06720;product=hypothetical protein;protein_id=WP_162814080.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1688475 1688693 . + . ID=gene-LPH40_RS06725;Name=LPH40_RS06725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06725;old_locus_tag=LPH40_06725 NZ_CP087685.1 GeneMarkS-2+ CDS 1688475 1688693 . + 0 ID=cds-WP_152536606.1;Parent=gene-LPH40_RS06725;Dbxref=Genbank:WP_152536606.1;Name=WP_152536606.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06725;product=hypothetical protein;protein_id=WP_152536606.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1689016 1689324 . + . ID=gene-LPH40_RS06730;Name=LPH40_RS06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06730;old_locus_tag=LPH40_06730 NZ_CP087685.1 Protein Homology CDS 1689016 1689324 . + 0 ID=cds-WP_038271109.1;Parent=gene-LPH40_RS06730;Dbxref=Genbank:WP_038271109.1;Name=WP_038271109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892802.1;locus_tag=LPH40_RS06730;product=hypothetical protein;protein_id=WP_038271109.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1690817 1691224 . + . ID=gene-LPH40_RS06735;Name=LPH40_RS06735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06735;old_locus_tag=LPH40_06735 NZ_CP087685.1 GeneMarkS-2+ CDS 1690817 1691224 . + 0 ID=cds-WP_069636209.1;Parent=gene-LPH40_RS06735;Dbxref=Genbank:WP_069636209.1;Name=WP_069636209.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06735;product=hypothetical protein;protein_id=WP_069636209.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1691565 1691687 . - . ID=gene-LPH40_RS12015;Name=LPH40_RS12015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS12015 NZ_CP087685.1 GeneMarkS-2+ CDS 1691565 1691687 . - 0 ID=cds-WP_267903167.1;Parent=gene-LPH40_RS12015;Dbxref=Genbank:WP_267903167.1;Name=WP_267903167.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS12015;product=hypothetical protein;protein_id=WP_267903167.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1691893 1692204 . + . ID=gene-LPH40_RS06740;Name=LPH40_RS06740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06740;old_locus_tag=LPH40_06740 NZ_CP087685.1 Protein Homology CDS 1691893 1692204 . + 0 ID=cds-WP_038271126.1;Parent=gene-LPH40_RS06740;Dbxref=Genbank:WP_038271126.1;Name=WP_038271126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011153918.1;locus_tag=LPH40_RS06740;product=hypothetical protein;protein_id=WP_038271126.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1692616 1692822 . - . ID=gene-LPH40_RS06745;Name=LPH40_RS06745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06745;old_locus_tag=LPH40_06745 NZ_CP087685.1 GeneMarkS-2+ CDS 1692616 1692822 . - 0 ID=cds-WP_069636211.1;Parent=gene-LPH40_RS06745;Dbxref=Genbank:WP_069636211.1;Name=WP_069636211.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06745;product=hypothetical protein;protein_id=WP_069636211.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1693018 1693161 . - . ID=gene-LPH40_RS06750;Name=LPH40_RS06750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06750;old_locus_tag=LPH40_06750 NZ_CP087685.1 GeneMarkS-2+ CDS 1693018 1693161 . - 0 ID=cds-WP_230428496.1;Parent=gene-LPH40_RS06750;Dbxref=Genbank:WP_230428496.1;Name=WP_230428496.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06750;product=hypothetical protein;protein_id=WP_230428496.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1693819 1694013 . - . ID=gene-LPH40_RS06755;Name=LPH40_RS06755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06755;old_locus_tag=LPH40_06755 NZ_CP087685.1 GeneMarkS-2+ CDS 1693819 1694013 . - 0 ID=cds-WP_038271113.1;Parent=gene-LPH40_RS06755;Dbxref=Genbank:WP_038271113.1;Name=WP_038271113.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06755;product=hypothetical protein;protein_id=WP_038271113.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1694261 1697152 . + . ID=gene-LPH40_RS06760;Name=LPH40_RS06760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06760;old_locus_tag=LPH40_06760 NZ_CP087685.1 Protein Homology CDS 1694261 1697152 . + 0 ID=cds-WP_171898040.1;Parent=gene-LPH40_RS06760;Dbxref=Genbank:WP_171898040.1;Name=WP_171898040.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097586.1;locus_tag=LPH40_RS06760;product=S8 family serine peptidase;protein_id=WP_171898040.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1698271 1701267 . + . ID=gene-LPH40_RS06765;Name=LPH40_RS06765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS06765;old_locus_tag=LPH40_06765;partial=true;pseudo=true;start_range=.,1698271 NZ_CP087685.1 Protein Homology CDS 1698271 1701267 . + 0 ID=cds-LPH40_RS06765;Parent=gene-LPH40_RS06765;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097865.1;locus_tag=LPH40_RS06765;partial=true;product=S8 family serine peptidase;pseudo=true;start_range=.,1698271;transl_table=11 NZ_CP087685.1 RefSeq gene 1701450 1702625 . - . ID=gene-LPH40_RS06770;Name=LPH40_RS06770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06770;old_locus_tag=LPH40_06770 NZ_CP087685.1 Protein Homology CDS 1701450 1702625 . - 0 ID=cds-WP_230428151.1;Parent=gene-LPH40_RS06770;Dbxref=Genbank:WP_230428151.1;Name=WP_230428151.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097547.1;locus_tag=LPH40_RS06770;product=MFS transporter;protein_id=WP_230428151.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1703299 1703712 . + . ID=gene-LPH40_RS06775;Name=LPH40_RS06775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06775;old_locus_tag=LPH40_06775 NZ_CP087685.1 GeneMarkS-2+ CDS 1703299 1703712 . + 0 ID=cds-WP_069636205.1;Parent=gene-LPH40_RS06775;Dbxref=Genbank:WP_069636205.1;Name=WP_069636205.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06775;product=SAM-dependent methyltransferase;protein_id=WP_069636205.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1704019 1704594 . - . ID=gene-LPH40_RS06780;Name=LPH40_RS06780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06780;old_locus_tag=LPH40_06780 NZ_CP087685.1 Protein Homology CDS 1704019 1704594 . - 0 ID=cds-WP_038270840.1;Parent=gene-LPH40_RS06780;Dbxref=Genbank:WP_038270840.1;Name=WP_038270840.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851002.1;locus_tag=LPH40_RS06780;product=DUF1439 domain-containing protein;protein_id=WP_038270840.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1705068 1706321 . - . ID=gene-LPH40_RS06785;Name=LPH40_RS06785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06785;old_locus_tag=LPH40_06785 NZ_CP087685.1 Protein Homology CDS 1705068 1706321 . - 0 ID=cds-WP_038270837.1;Parent=gene-LPH40_RS06785;Dbxref=Genbank:WP_038270837.1;Name=WP_038270837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087999.1;locus_tag=LPH40_RS06785;product=6-phosphofructokinase;protein_id=WP_038270837.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1706466 1707029 . + . ID=gene-LPH40_RS06790;Name=LPH40_RS06790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06790;old_locus_tag=LPH40_06790 NZ_CP087685.1 Protein Homology CDS 1706466 1707029 . + 0 ID=cds-WP_038270836.1;Parent=gene-LPH40_RS06790;Dbxref=Genbank:WP_038270836.1;Name=WP_038270836.1;Ontology_term=GO:0006139,GO:0005524,GO:0019205;gbkey=CDS;go_function=ATP binding|0005524||IEA,nucleobase-containing compound kinase activity|0019205||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364422.1;locus_tag=LPH40_RS06790;product=adenylate kinase;protein_id=WP_038270836.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1707317 1708732 . + . ID=gene-LPH40_RS06795;Name=mpl;gbkey=Gene;gene=mpl;gene_biotype=protein_coding;locus_tag=LPH40_RS06795;old_locus_tag=LPH40_06795 NZ_CP087685.1 Protein Homology CDS 1707317 1708732 . + 0 ID=cds-WP_038270870.1;Parent=gene-LPH40_RS06795;Dbxref=Genbank:WP_038270870.1;Name=WP_038270870.1;Ontology_term=GO:0009252,GO:0016881;gbkey=CDS;gene=mpl;go_function=acid-amino acid ligase activity|0016881||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851061.1;locus_tag=LPH40_RS06795;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=WP_038270870.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1709368 1711395 . - . ID=gene-LPH40_RS06800;Name=LPH40_RS06800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06800;old_locus_tag=LPH40_06800 NZ_CP087685.1 Protein Homology CDS 1709368 1711395 . - 0 ID=cds-WP_038270834.1;Parent=gene-LPH40_RS06800;Dbxref=Genbank:WP_038270834.1;Name=WP_038270834.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851005.1;locus_tag=LPH40_RS06800;product=bifunctional DedA family/phosphatase PAP2 family protein;protein_id=WP_038270834.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1711486 1712145 . + . ID=gene-LPH40_RS06805;Name=LPH40_RS06805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06805;old_locus_tag=LPH40_06805 NZ_CP087685.1 Protein Homology CDS 1711486 1712145 . + 0 ID=cds-WP_038270869.1;Parent=gene-LPH40_RS06805;Dbxref=Genbank:WP_038270869.1;Name=WP_038270869.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087991.1;locus_tag=LPH40_RS06805;product=serine/threonine-protein kinase;protein_id=WP_038270869.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1712690 1712911 . + . ID=gene-LPH40_RS06810;Name=LPH40_RS06810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06810;old_locus_tag=LPH40_06810 NZ_CP087685.1 GeneMarkS-2+ CDS 1712690 1712911 . + 0 ID=cds-WP_152536597.1;Parent=gene-LPH40_RS06810;Dbxref=Genbank:WP_152536597.1;Name=WP_152536597.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06810;product=hypothetical protein;protein_id=WP_152536597.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1713236 1713466 . + . ID=gene-LPH40_RS06815;Name=LPH40_RS06815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06815;old_locus_tag=LPH40_06815 NZ_CP087685.1 GeneMarkS-2+ CDS 1713236 1713466 . + 0 ID=cds-WP_152536596.1;Parent=gene-LPH40_RS06815;Dbxref=Genbank:WP_152536596.1;Name=WP_152536596.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06815;product=hypothetical protein;protein_id=WP_152536596.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1714489 1715349 . + . ID=gene-LPH40_RS06820;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=LPH40_RS06820;old_locus_tag=LPH40_06820 NZ_CP087685.1 Protein Homology CDS 1714489 1715349 . + 0 ID=cds-WP_051482288.1;Parent=gene-LPH40_RS06820;Dbxref=Genbank:WP_051482288.1;Name=WP_051482288.1;Ontology_term=GO:0006810,GO:0005215,GO:0005886;gbkey=CDS;gene=rarD;go_component=plasma membrane|0005886||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902633.1;locus_tag=LPH40_RS06820;product=EamA family transporter RarD;protein_id=WP_051482288.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1716098 1717465 . - . ID=gene-LPH40_RS06825;Name=LPH40_RS06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06825;old_locus_tag=LPH40_06825 NZ_CP087685.1 Protein Homology CDS 1716098 1717465 . - 0 ID=cds-WP_038270828.1;Parent=gene-LPH40_RS06825;Dbxref=Genbank:WP_038270828.1;Name=WP_038270828.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851007.1;locus_tag=LPH40_RS06825;product=M17 family metallopeptidase;protein_id=WP_038270828.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1717713 1717955 . - . ID=gene-LPH40_RS06830;Name=LPH40_RS06830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06830;old_locus_tag=LPH40_06830 NZ_CP087685.1 GeneMarkS-2+ CDS 1717713 1717955 . - 0 ID=cds-WP_038270827.1;Parent=gene-LPH40_RS06830;Dbxref=Genbank:WP_038270827.1;Name=WP_038270827.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06830;product=hypothetical protein;protein_id=WP_038270827.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1717994 1719103 . - . ID=gene-LPH40_RS06835;Name=LPH40_RS06835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06835;old_locus_tag=LPH40_06835 NZ_CP087685.1 Protein Homology CDS 1717994 1719103 . - 0 ID=cds-WP_038270826.1;Parent=gene-LPH40_RS06835;Dbxref=Genbank:WP_038270826.1;Name=WP_038270826.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087985.1;locus_tag=LPH40_RS06835;product=AI-2E family transporter;protein_id=WP_038270826.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1719188 1719577 . - . ID=gene-LPH40_RS06840;Name=LPH40_RS06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06840;old_locus_tag=LPH40_06840 NZ_CP087685.1 Protein Homology CDS 1719188 1719577 . - 0 ID=cds-WP_038270824.1;Parent=gene-LPH40_RS06840;Dbxref=Genbank:WP_038270824.1;Name=WP_038270824.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851009.1;locus_tag=LPH40_RS06840;product=hypothetical protein;protein_id=WP_038270824.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1719574 1720053 . - . ID=gene-LPH40_RS06845;Name=LPH40_RS06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06845;old_locus_tag=LPH40_06845 NZ_CP087685.1 Protein Homology CDS 1719574 1720053 . - 0 ID=cds-WP_051482286.1;Parent=gene-LPH40_RS06845;Dbxref=Genbank:WP_051482286.1;Name=WP_051482286.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085335.1;locus_tag=LPH40_RS06845;product=hypothetical protein;protein_id=WP_051482286.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1720059 1720421 . - . ID=gene-LPH40_RS06850;Name=LPH40_RS06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06850;old_locus_tag=LPH40_06850 NZ_CP087685.1 Protein Homology CDS 1720059 1720421 . - 0 ID=cds-WP_038270823.1;Parent=gene-LPH40_RS06850;Dbxref=Genbank:WP_038270823.1;Name=WP_038270823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010486932.1;locus_tag=LPH40_RS06850;product=hypothetical protein;protein_id=WP_038270823.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1720714 1722159 . - . ID=gene-LPH40_RS06855;Name=LPH40_RS06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06855;old_locus_tag=LPH40_06855 NZ_CP087685.1 Protein Homology CDS 1720714 1722159 . - 0 ID=cds-WP_038270822.1;Parent=gene-LPH40_RS06855;Dbxref=Genbank:WP_038270822.1;Name=WP_038270822.1;Ontology_term=GO:0006508,GO:0006950,GO:0004252,GO:0005515,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=serine-type endopeptidase activity|0004252||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA,response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257055.1;locus_tag=LPH40_RS06855;product=Do family serine endopeptidase;protein_id=WP_038270822.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1722990 1723886 . - . ID=gene-LPH40_RS06860;Name=LPH40_RS06860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06860;old_locus_tag=LPH40_06860 NZ_CP087685.1 Protein Homology CDS 1722990 1723886 . - 0 ID=cds-WP_038270821.1;Parent=gene-LPH40_RS06860;Dbxref=Genbank:WP_038270821.1;Name=WP_038270821.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851011.1;locus_tag=LPH40_RS06860;product=TIGR01777 family oxidoreductase;protein_id=WP_038270821.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1725242 1726927 . - . ID=gene-LPH40_RS06865;Name=LPH40_RS06865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06865;old_locus_tag=LPH40_06865 NZ_CP087685.1 Protein Homology CDS 1725242 1726927 . - 0 ID=cds-WP_038270820.1;Parent=gene-LPH40_RS06865;Dbxref=Genbank:WP_038270820.1;Name=WP_038270820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571491.1;locus_tag=LPH40_RS06865;product=long-chain fatty acid--CoA ligase;protein_id=WP_038270820.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1728239 1730980 . - . ID=gene-LPH40_RS06870;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=LPH40_RS06870;old_locus_tag=LPH40_06870 NZ_CP087685.1 Protein Homology CDS 1728239 1730980 . - 0 ID=cds-WP_038270818.1;Parent=gene-LPH40_RS06870;Dbxref=Genbank:WP_038270818.1;Name=WP_038270818.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnA;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851015.1;locus_tag=LPH40_RS06870;product=aconitate hydratase AcnA;protein_id=WP_038270818.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1731237 1731476 . + . ID=gene-LPH40_RS06875;Name=LPH40_RS06875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06875;old_locus_tag=LPH40_06875 NZ_CP087685.1 Protein Homology CDS 1731237 1731476 . + 0 ID=cds-WP_038270817.1;Parent=gene-LPH40_RS06875;Dbxref=Genbank:WP_038270817.1;Name=WP_038270817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085317.1;locus_tag=LPH40_RS06875;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_038270817.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1731481 1731879 . + . ID=gene-LPH40_RS06880;Name=LPH40_RS06880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06880;old_locus_tag=LPH40_06880 NZ_CP087685.1 Protein Homology CDS 1731481 1731879 . + 0 ID=cds-WP_038270867.1;Parent=gene-LPH40_RS06880;Dbxref=Genbank:WP_038270867.1;Name=WP_038270867.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008267153.1;locus_tag=LPH40_RS06880;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_038270867.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1731929 1734532 . + . ID=gene-LPH40_RS06885;Name=acnB;gbkey=Gene;gene=acnB;gene_biotype=protein_coding;locus_tag=LPH40_RS06885;old_locus_tag=LPH40_06885 NZ_CP087685.1 Protein Homology CDS 1731929 1734532 . + 0 ID=cds-WP_038270816.1;Parent=gene-LPH40_RS06885;Dbxref=Genbank:WP_038270816.1;Name=WP_038270816.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnB;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017908727.1;locus_tag=LPH40_RS06885;product=bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase;protein_id=WP_038270816.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1735182 1735257 . + . ID=gene-LPH40_RS06890;Name=LPH40_RS06890;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS06890;old_locus_tag=LPH40_06890 NZ_CP087685.1 tRNAscan-SE tRNA 1735182 1735257 . + . ID=rna-LPH40_RS06890;Parent=gene-LPH40_RS06890;anticodon=(pos:1735215..1735217);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06890;product=tRNA-Phe NZ_CP087685.1 tRNAscan-SE exon 1735182 1735257 . + . ID=exon-LPH40_RS06890-1;Parent=rna-LPH40_RS06890;anticodon=(pos:1735215..1735217);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06890;product=tRNA-Phe NZ_CP087685.1 RefSeq gene 1735478 1735708 . + . ID=gene-LPH40_RS06895;Name=LPH40_RS06895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06895;old_locus_tag=LPH40_06895 NZ_CP087685.1 Protein Homology CDS 1735478 1735708 . + 0 ID=cds-WP_069636204.1;Parent=gene-LPH40_RS06895;Dbxref=Genbank:WP_069636204.1;Name=WP_069636204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011806707.1;locus_tag=LPH40_RS06895;product=hypothetical protein;protein_id=WP_069636204.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1735774 1737534 . + . ID=gene-LPH40_RS06900;Name=LPH40_RS06900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06900;old_locus_tag=LPH40_06900 NZ_CP087685.1 Protein Homology CDS 1735774 1737534 . + 0 ID=cds-WP_038270814.1;Parent=gene-LPH40_RS06900;Dbxref=Genbank:WP_038270814.1;Name=WP_038270814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903354.1;locus_tag=LPH40_RS06900;product=class I SAM-dependent DNA methyltransferase;protein_id=WP_038270814.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1737524 1738897 . + . ID=gene-LPH40_RS06905;Name=LPH40_RS06905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06905;old_locus_tag=LPH40_06905 NZ_CP087685.1 GeneMarkS-2+ CDS 1737524 1738897 . + 0 ID=cds-WP_051482285.1;Parent=gene-LPH40_RS06905;Dbxref=Genbank:WP_051482285.1;Name=WP_051482285.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06905;product=restriction endonuclease subunit S;protein_id=WP_051482285.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1738894 1739919 . + . ID=gene-LPH40_RS06910;Name=LPH40_RS06910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06910;old_locus_tag=LPH40_06910 NZ_CP087685.1 Protein Homology CDS 1738894 1739919 . + 0 ID=cds-WP_205395222.1;Parent=gene-LPH40_RS06910;Dbxref=Genbank:WP_205395222.1;Name=WP_205395222.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024685.2;locus_tag=LPH40_RS06910;product=SIR2 family protein;protein_id=WP_205395222.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1739909 1740370 . + . ID=gene-LPH40_RS06915;Name=LPH40_RS06915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06915;old_locus_tag=LPH40_06915 NZ_CP087685.1 Protein Homology CDS 1739909 1740370 . + 0 ID=cds-WP_200866187.1;Parent=gene-LPH40_RS06915;Dbxref=Genbank:WP_200866187.1;Name=WP_200866187.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025468.2;locus_tag=LPH40_RS06915;product=DUF4276 family protein;protein_id=WP_200866187.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1740379 1743549 . + . ID=gene-LPH40_RS06920;Name=LPH40_RS06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06920;old_locus_tag=LPH40_06920 NZ_CP087685.1 Protein Homology CDS 1740379 1743549 . + 0 ID=cds-WP_038270864.1;Parent=gene-LPH40_RS06920;Dbxref=Genbank:WP_038270864.1;Name=WP_038270864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001001495.1;locus_tag=LPH40_RS06920;product=type I restriction endonuclease subunit R;protein_id=WP_038270864.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1743735 1744595 . + . ID=gene-LPH40_RS06925;Name=LPH40_RS06925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06925;old_locus_tag=LPH40_06925 NZ_CP087685.1 GeneMarkS-2+ CDS 1743735 1744595 . + 0 ID=cds-WP_160165153.1;Parent=gene-LPH40_RS06925;Dbxref=Genbank:WP_160165153.1;Name=WP_160165153.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06925;product=ABC transporter permease;protein_id=WP_160165153.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1744709 1745059 . + . ID=gene-LPH40_RS06930;Name=LPH40_RS06930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06930;old_locus_tag=LPH40_06930 NZ_CP087685.1 GeneMarkS-2+ CDS 1744709 1745059 . + 0 ID=cds-WP_160199326.1;Parent=gene-LPH40_RS06930;Dbxref=Genbank:WP_160199326.1;Name=WP_160199326.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS06930;product=hypothetical protein;protein_id=WP_160199326.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1746197 1746949 . + . ID=gene-LPH40_RS06935;Name=LPH40_RS06935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06935;old_locus_tag=LPH40_06935 NZ_CP087685.1 Protein Homology CDS 1746197 1746949 . + 0 ID=cds-WP_038270810.1;Parent=gene-LPH40_RS06935;Dbxref=Genbank:WP_038270810.1;Name=WP_038270810.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024950.2;locus_tag=LPH40_RS06935;product=SDR family oxidoreductase;protein_id=WP_038270810.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1747347 1748123 . + . ID=gene-LPH40_RS06940;Name=tpiA;gbkey=Gene;gene=tpiA;gene_biotype=protein_coding;locus_tag=LPH40_RS06940;old_locus_tag=LPH40_06940 NZ_CP087685.1 Protein Homology CDS 1747347 1748123 . + 0 ID=cds-WP_038270809.1;Parent=gene-LPH40_RS06940;Dbxref=Genbank:WP_038270809.1;Name=WP_038270809.1;Ontology_term=GO:0006096,GO:0004807;gbkey=CDS;gene=tpiA;go_function=triose-phosphate isomerase activity|0004807||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156090.1;locus_tag=LPH40_RS06940;product=triose-phosphate isomerase;protein_id=WP_038270809.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1748117 1748527 . + . ID=gene-LPH40_RS06945;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=LPH40_RS06945;old_locus_tag=LPH40_06945 NZ_CP087685.1 Protein Homology CDS 1748117 1748527 . + 0 ID=cds-WP_038270808.1;Parent=gene-LPH40_RS06945;Dbxref=Genbank:WP_038270808.1;Name=WP_038270808.1;Ontology_term=GO:0043952,GO:0015450,GO:0005886;gbkey=CDS;gene=secG;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010892840.1;locus_tag=LPH40_RS06945;product=preprotein translocase subunit SecG;protein_id=WP_038270808.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1748578 1748662 . + . ID=gene-LPH40_RS06950;Name=LPH40_RS06950;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS06950;old_locus_tag=LPH40_06950 NZ_CP087685.1 tRNAscan-SE tRNA 1748578 1748662 . + . ID=rna-LPH40_RS06950;Parent=gene-LPH40_RS06950;anticodon=(pos:1748612..1748614);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06950;product=tRNA-Leu NZ_CP087685.1 tRNAscan-SE exon 1748578 1748662 . + . ID=exon-LPH40_RS06950-1;Parent=rna-LPH40_RS06950;anticodon=(pos:1748612..1748614);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS06950;product=tRNA-Leu NZ_CP087685.1 RefSeq gene 1748776 1749132 . + . ID=gene-LPH40_RS06955;Name=LPH40_RS06955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06955;old_locus_tag=LPH40_06955 NZ_CP087685.1 Protein Homology CDS 1748776 1749132 . + 0 ID=cds-WP_038270807.1;Parent=gene-LPH40_RS06955;Dbxref=Genbank:WP_038270807.1;Name=WP_038270807.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003467430.1;locus_tag=LPH40_RS06955;product=NADH-quinone oxidoreductase subunit A;protein_id=WP_038270807.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1749123 1749677 . + . ID=gene-LPH40_RS06960;Name=LPH40_RS06960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06960;old_locus_tag=LPH40_06960 NZ_CP087685.1 Protein Homology CDS 1749123 1749677 . + 0 ID=cds-WP_038270806.1;Parent=gene-LPH40_RS06960;Dbxref=Genbank:WP_038270806.1;Name=WP_038270806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914280.1;locus_tag=LPH40_RS06960;product=NADH-quinone oxidoreductase subunit B;protein_id=WP_038270806.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1749728 1750465 . + . ID=gene-LPH40_RS06965;Name=LPH40_RS06965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06965;old_locus_tag=LPH40_06965 NZ_CP087685.1 Protein Homology CDS 1749728 1750465 . + 0 ID=cds-WP_038270805.1;Parent=gene-LPH40_RS06965;Dbxref=Genbank:WP_038270805.1;Name=WP_038270805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927494.1;locus_tag=LPH40_RS06965;product=NADH-quinone oxidoreductase subunit C;protein_id=WP_038270805.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1750466 1751773 . + . ID=gene-LPH40_RS06970;Name=LPH40_RS06970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS06970;old_locus_tag=LPH40_06970 NZ_CP087685.1 Protein Homology CDS 1750466 1751773 . + 0 ID=cds-WP_038270803.1;Parent=gene-LPH40_RS06970;Dbxref=Genbank:WP_038270803.1;Name=WP_038270803.1;Ontology_term=GO:0016651,GO:0048038,GO:0051287;gbkey=CDS;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,quinone binding|0048038||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810223.1;locus_tag=LPH40_RS06970;product=NADH-quinone oxidoreductase subunit D;protein_id=WP_038270803.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1751770 1752297 . + . ID=gene-LPH40_RS06975;Name=nuoE;gbkey=Gene;gene=nuoE;gene_biotype=protein_coding;locus_tag=LPH40_RS06975;old_locus_tag=LPH40_06975 NZ_CP087685.1 Protein Homology CDS 1751770 1752297 . + 0 ID=cds-WP_038270802.1;Parent=gene-LPH40_RS06975;Dbxref=Genbank:WP_038270802.1;Name=WP_038270802.1;gbkey=CDS;gene=nuoE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410460.1;locus_tag=LPH40_RS06975;product=NADH-quinone oxidoreductase subunit NuoE;protein_id=WP_038270802.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1752302 1753636 . + . ID=gene-LPH40_RS06980;Name=nuoF;gbkey=Gene;gene=nuoF;gene_biotype=protein_coding;locus_tag=LPH40_RS06980;old_locus_tag=LPH40_06980 NZ_CP087685.1 Protein Homology CDS 1752302 1753636 . + 0 ID=cds-WP_038270862.1;Parent=gene-LPH40_RS06980;Dbxref=Genbank:WP_038270862.1;Name=WP_038270862.1;Ontology_term=GO:0050136;gbkey=CDS;gene=nuoF;go_function=NADH dehydrogenase (quinone) activity|0050136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851036.1;locus_tag=LPH40_RS06980;product=NADH-quinone oxidoreductase subunit NuoF;protein_id=WP_038270862.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1753633 1755867 . + . ID=gene-LPH40_RS06985;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=LPH40_RS06985;old_locus_tag=LPH40_06985 NZ_CP087685.1 Protein Homology CDS 1753633 1755867 . + 0 ID=cds-WP_114867061.1;Parent=gene-LPH40_RS06985;Dbxref=Genbank:WP_114867061.1;Name=WP_114867061.1;Ontology_term=GO:0006120,GO:0050136;gbkey=CDS;gene=nuoG;go_function=NADH dehydrogenase (quinone) activity|0050136||IEA;go_process=mitochondrial electron transport%2C NADH to ubiquinone|0006120||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851037.1;locus_tag=LPH40_RS06985;product=NADH-quinone oxidoreductase subunit NuoG;protein_id=WP_114867061.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1755864 1756955 . + . ID=gene-LPH40_RS06990;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=LPH40_RS06990;old_locus_tag=LPH40_06990 NZ_CP087685.1 Protein Homology CDS 1755864 1756955 . + 0 ID=cds-WP_038270800.1;Parent=gene-LPH40_RS06990;Dbxref=Genbank:WP_038270800.1;Name=WP_038270800.1;Ontology_term=GO:0016020;gbkey=CDS;gene=nuoH;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375869.1;locus_tag=LPH40_RS06990;product=NADH-quinone oxidoreductase subunit NuoH;protein_id=WP_038270800.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1756959 1757447 . + . ID=gene-LPH40_RS06995;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=LPH40_RS06995;old_locus_tag=LPH40_06995 NZ_CP087685.1 Protein Homology CDS 1756959 1757447 . + 0 ID=cds-WP_038270799.1;Parent=gene-LPH40_RS06995;Dbxref=Genbank:WP_038270799.1;Name=WP_038270799.1;Ontology_term=GO:0016651,GO:0051539;gbkey=CDS;gene=nuoI;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927506.1;locus_tag=LPH40_RS06995;product=NADH-quinone oxidoreductase subunit NuoI;protein_id=WP_038270799.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1757455 1758117 . + . ID=gene-LPH40_RS07000;Name=LPH40_RS07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07000;old_locus_tag=LPH40_07000 NZ_CP087685.1 Protein Homology CDS 1757455 1758117 . + 0 ID=cds-WP_038270860.1;Parent=gene-LPH40_RS07000;Dbxref=Genbank:WP_038270860.1;Name=WP_038270860.1;Ontology_term=GO:0008137;gbkey=CDS;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085294.1;locus_tag=LPH40_RS07000;product=NADH-quinone oxidoreductase subunit J;protein_id=WP_038270860.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1758114 1758419 . + . ID=gene-LPH40_RS07005;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=LPH40_RS07005;old_locus_tag=LPH40_07005 NZ_CP087685.1 Protein Homology CDS 1758114 1758419 . + 0 ID=cds-WP_038270798.1;Parent=gene-LPH40_RS07005;Dbxref=Genbank:WP_038270798.1;Name=WP_038270798.1;gbkey=CDS;gene=nuoK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450557.1;locus_tag=LPH40_RS07005;product=NADH-quinone oxidoreductase subunit NuoK;protein_id=WP_038270798.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1758427 1760574 . + . ID=gene-LPH40_RS07010;Name=nuoL;gbkey=Gene;gene=nuoL;gene_biotype=protein_coding;locus_tag=LPH40_RS07010;old_locus_tag=LPH40_07010 NZ_CP087685.1 Protein Homology CDS 1758427 1760574 . + 0 ID=cds-WP_038270797.1;Parent=gene-LPH40_RS07010;Dbxref=Genbank:WP_038270797.1;Name=WP_038270797.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoL;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485563.1;locus_tag=LPH40_RS07010;product=NADH-quinone oxidoreductase subunit L;protein_id=WP_038270797.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1760596 1762101 . + . ID=gene-LPH40_RS07015;Name=LPH40_RS07015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07015;old_locus_tag=LPH40_07015 NZ_CP087685.1 Protein Homology CDS 1760596 1762101 . + 0 ID=cds-WP_038270796.1;Parent=gene-LPH40_RS07015;Dbxref=Genbank:WP_038270796.1;Name=WP_038270796.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300411.1;locus_tag=LPH40_RS07015;product=NADH-quinone oxidoreductase subunit M;protein_id=WP_038270796.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1762136 1763593 . + . ID=gene-LPH40_RS07020;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=LPH40_RS07020;old_locus_tag=LPH40_07020 NZ_CP087685.1 Protein Homology CDS 1762136 1763593 . + 0 ID=cds-WP_038270795.1;Parent=gene-LPH40_RS07020;Dbxref=Genbank:WP_038270795.1;Name=WP_038270795.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoN;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485567.1;locus_tag=LPH40_RS07020;product=NADH-quinone oxidoreductase subunit NuoN;protein_id=WP_038270795.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1763953 1764693 . - . ID=gene-LPH40_RS07025;Name=phbB;gbkey=Gene;gene=phbB;gene_biotype=protein_coding;locus_tag=LPH40_RS07025;old_locus_tag=LPH40_07025 NZ_CP087685.1 Protein Homology CDS 1763953 1764693 . - 0 ID=cds-WP_038270793.1;Parent=gene-LPH40_RS07025;Dbxref=Genbank:WP_038270793.1;Name=WP_038270793.1;Ontology_term=GO:0042619,GO:0018454;gbkey=CDS;gene=phbB;go_function=acetoacetyl-CoA reductase activity|0018454||IEA;go_process=poly-hydroxybutyrate biosynthetic process|0042619||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085289.1;locus_tag=LPH40_RS07025;product=acetoacetyl-CoA reductase;protein_id=WP_038270793.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1764752 1766083 . - . ID=gene-LPH40_RS07030;Name=LPH40_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07030;old_locus_tag=LPH40_07030 NZ_CP087685.1 Protein Homology CDS 1764752 1766083 . - 0 ID=cds-WP_038270792.1;Parent=gene-LPH40_RS07030;Dbxref=Genbank:WP_038270792.1;Name=WP_038270792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085288.1;locus_tag=LPH40_RS07030;product=CitMHS family transporter;protein_id=WP_038270792.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1766216 1767406 . - . ID=gene-LPH40_RS07035;Name=LPH40_RS07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07035;old_locus_tag=LPH40_07035 NZ_CP087685.1 Protein Homology CDS 1766216 1767406 . - 0 ID=cds-WP_038270791.1;Parent=gene-LPH40_RS07035;Dbxref=Genbank:WP_038270791.1;Name=WP_038270791.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852491.1;locus_tag=LPH40_RS07035;product=OprO/OprP family phosphate-selective porin;protein_id=WP_038270791.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1767612 1768301 . + . ID=gene-LPH40_RS07040;Name=LPH40_RS07040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07040;old_locus_tag=LPH40_07040 NZ_CP087685.1 Protein Homology CDS 1767612 1768301 . + 0 ID=cds-WP_038270790.1;Parent=gene-LPH40_RS07040;Dbxref=Genbank:WP_038270790.1;Name=WP_038270790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085286.1;locus_tag=LPH40_RS07040;product=response regulator transcription factor;protein_id=WP_038270790.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1768291 1769673 . + . ID=gene-LPH40_RS07045;Name=LPH40_RS07045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07045;old_locus_tag=LPH40_07045 NZ_CP087685.1 Protein Homology CDS 1768291 1769673 . + 0 ID=cds-WP_038270789.1;Parent=gene-LPH40_RS07045;Dbxref=Genbank:WP_038270789.1;Name=WP_038270789.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852489.1;locus_tag=LPH40_RS07045;product=sensor histidine kinase;protein_id=WP_038270789.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1769670 1770713 . + . ID=gene-LPH40_RS07050;Name=LPH40_RS07050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07050;old_locus_tag=LPH40_07050 NZ_CP087685.1 Protein Homology CDS 1769670 1770713 . + 0 ID=cds-WP_171898041.1;Parent=gene-LPH40_RS07050;Dbxref=Genbank:WP_171898041.1;Name=WP_171898041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157495.1;locus_tag=LPH40_RS07050;product=ABC transporter substrate-binding protein;protein_id=WP_171898041.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1771421 1772053 . + . ID=gene-LPH40_RS07055;Name=LPH40_RS07055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07055;old_locus_tag=LPH40_07055 NZ_CP087685.1 Protein Homology CDS 1771421 1772053 . + 0 ID=cds-WP_038270788.1;Parent=gene-LPH40_RS07055;Dbxref=Genbank:WP_038270788.1;Name=WP_038270788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097569.1;locus_tag=LPH40_RS07055;product=response regulator transcription factor;protein_id=WP_038270788.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1772096 1773733 . - . ID=gene-LPH40_RS07060;Name=LPH40_RS07060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07060;old_locus_tag=LPH40_07060 NZ_CP087685.1 Protein Homology CDS 1772096 1773733 . - 0 ID=cds-WP_081755415.1;Parent=gene-LPH40_RS07060;Dbxref=Genbank:WP_081755415.1;Name=WP_081755415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165838.1;locus_tag=LPH40_RS07060;product=PAS-domain containing protein;protein_id=WP_081755415.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1774562 1775731 . - . ID=gene-LPH40_RS07065;Name=LPH40_RS07065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07065;old_locus_tag=LPH40_07065 NZ_CP087685.1 Protein Homology CDS 1774562 1775731 . - 0 ID=cds-WP_038270786.1;Parent=gene-LPH40_RS07065;Dbxref=Genbank:WP_038270786.1;Name=WP_038270786.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087915.1;locus_tag=LPH40_RS07065;product=porin;protein_id=WP_038270786.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1776028 1777368 . + . ID=gene-LPH40_RS07070;Name=LPH40_RS07070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07070;old_locus_tag=LPH40_07070 NZ_CP087685.1 Protein Homology CDS 1776028 1777368 . + 0 ID=cds-WP_038270785.1;Parent=gene-LPH40_RS07070;Dbxref=Genbank:WP_038270785.1;Name=WP_038270785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087914.1;locus_tag=LPH40_RS07070;product=dicarboxylate/amino acid:cation symporter;protein_id=WP_038270785.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1777533 1779827 . + . ID=gene-LPH40_RS07075;Name=LPH40_RS07075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07075;old_locus_tag=LPH40_07075 NZ_CP087685.1 Protein Homology CDS 1777533 1779827 . + 0 ID=cds-WP_038270784.1;Parent=gene-LPH40_RS07075;Dbxref=Genbank:WP_038270784.1;Name=WP_038270784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893496.1;locus_tag=LPH40_RS07075;product=NADP-dependent malic enzyme;protein_id=WP_038270784.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1780071 1781975 . - . ID=gene-LPH40_RS07080;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=LPH40_RS07080;old_locus_tag=LPH40_07080 NZ_CP087685.1 Protein Homology CDS 1780071 1781975 . - 0 ID=cds-WP_038270783.1;Parent=gene-LPH40_RS07080;Dbxref=Genbank:WP_038270783.1;Name=WP_038270783.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887,GO:0051082;gbkey=CDS;gene=htpG;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303855.1;locus_tag=LPH40_RS07080;product=molecular chaperone HtpG;protein_id=WP_038270783.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1782149 1782778 . + . ID=gene-LPH40_RS07085;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=LPH40_RS07085;old_locus_tag=LPH40_07085 NZ_CP087685.1 Protein Homology CDS 1782149 1782778 . + 0 ID=cds-WP_038270857.1;Parent=gene-LPH40_RS07085;Dbxref=Genbank:WP_038270857.1;Name=WP_038270857.1;Ontology_term=GO:0031167,GO:0052913;gbkey=CDS;gene=rsmD;go_function=16S rRNA (guanine(966)-N(2))-methyltransferase activity|0052913||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852480.1;locus_tag=LPH40_RS07085;product=16S rRNA (guanine(966)-N(2))-methyltransferase RsmD;protein_id=WP_038270857.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1782775 1783263 . + . ID=gene-LPH40_RS07090;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=LPH40_RS07090;old_locus_tag=LPH40_07090 NZ_CP087685.1 Protein Homology CDS 1782775 1783263 . + 0 ID=cds-WP_038270782.1;Parent=gene-LPH40_RS07090;Dbxref=Genbank:WP_038270782.1;Name=WP_038270782.1;Ontology_term=GO:0015937,GO:0004595;gbkey=CDS;gene=coaD;go_function=pantetheine-phosphate adenylyltransferase activity|0004595||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005409091.1;locus_tag=LPH40_RS07090;product=pantetheine-phosphate adenylyltransferase;protein_id=WP_038270782.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1783312 1783806 . + . ID=gene-LPH40_RS07095;Name=LPH40_RS07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07095;old_locus_tag=LPH40_07095 NZ_CP087685.1 Protein Homology CDS 1783312 1783806 . + 0 ID=cds-WP_038270781.1;Parent=gene-LPH40_RS07095;Dbxref=Genbank:WP_038270781.1;Name=WP_038270781.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157277.1;locus_tag=LPH40_RS07095;product=hypothetical protein;protein_id=WP_038270781.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1783969 1784253 . + . ID=gene-LPH40_RS07100;Name=LPH40_RS07100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07100;old_locus_tag=LPH40_07100 NZ_CP087685.1 Protein Homology CDS 1783969 1784253 . + 0 ID=cds-WP_038270856.1;Parent=gene-LPH40_RS07100;Dbxref=Genbank:WP_038270856.1;Name=WP_038270856.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851038.1;locus_tag=LPH40_RS07100;product=YfhL family 4Fe-4S dicluster ferredoxin;protein_id=WP_038270856.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1784361 1786010 . + . ID=gene-LPH40_RS07105;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=pseudogene;locus_tag=LPH40_RS07105;old_locus_tag=LPH40_07105;partial=true;pseudo=true;start_range=.,1784361 NZ_CP087685.1 Protein Homology CDS 1784361 1786010 . + 0 ID=cds-LPH40_RS07105;Parent=gene-LPH40_RS07105;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006750;gbkey=CDS;gene=ggt;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157276.1;locus_tag=LPH40_RS07105;partial=true;product=gamma-glutamyltransferase;pseudo=true;start_range=.,1784361;transl_table=11 NZ_CP087685.1 RefSeq gene 1787007 1788665 . + . ID=gene-LPH40_RS07110;Name=LPH40_RS07110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07110;old_locus_tag=LPH40_07110 NZ_CP087685.1 Protein Homology CDS 1787007 1788665 . + 0 ID=cds-WP_038270779.1;Parent=gene-LPH40_RS07110;Dbxref=Genbank:WP_038270779.1;Name=WP_038270779.1;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382441.1;locus_tag=LPH40_RS07110;product=GGDEF domain-containing protein;protein_id=WP_038270779.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1788765 1789568 . - . ID=gene-LPH40_RS07115;Name=LPH40_RS07115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07115;old_locus_tag=LPH40_07115 NZ_CP087685.1 Protein Homology CDS 1788765 1789568 . - 0 ID=cds-WP_230428269.1;Parent=gene-LPH40_RS07115;Dbxref=Genbank:WP_230428269.1;Name=WP_230428269.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269661.1;locus_tag=LPH40_RS07115;product=M23 family metallopeptidase;protein_id=WP_230428269.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1789616 1790965 . - . ID=gene-LPH40_RS07120;Name=LPH40_RS07120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07120;old_locus_tag=LPH40_07120 NZ_CP087685.1 Protein Homology CDS 1789616 1790965 . - 0 ID=cds-WP_038270776.1;Parent=gene-LPH40_RS07120;Dbxref=Genbank:WP_038270776.1;Name=WP_038270776.1;Ontology_term=GO:0016812;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in cyclic amides|0016812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302579.1;locus_tag=LPH40_RS07120;product=dihydroorotase;protein_id=WP_038270776.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1790962 1791225 . - . ID=gene-LPH40_RS07125;Name=yidD;gbkey=Gene;gene=yidD;gene_biotype=protein_coding;locus_tag=LPH40_RS07125;old_locus_tag=LPH40_07125 NZ_CP087685.1 Protein Homology CDS 1790962 1791225 . - 0 ID=cds-WP_038270775.1;Parent=gene-LPH40_RS07125;Dbxref=Genbank:WP_038270775.1;Name=WP_038270775.1;gbkey=CDS;gene=yidD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893508.1;locus_tag=LPH40_RS07125;product=membrane protein insertion efficiency factor YidD;protein_id=WP_038270775.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1791333 1792271 . + . ID=gene-LPH40_RS07130;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=LPH40_RS07130;old_locus_tag=LPH40_07130 NZ_CP087685.1 Protein Homology CDS 1791333 1792271 . + 0 ID=cds-WP_038270774.1;Parent=gene-LPH40_RS07130;Dbxref=Genbank:WP_038270774.1;Name=WP_038270774.1;Ontology_term=GO:0006355,GO:0019899;gbkey=CDS;gene=dksA;go_function=enzyme binding|0019899||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085263.1;locus_tag=LPH40_RS07130;product=RNA polymerase-binding protein DksA;protein_id=WP_038270774.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1792454 1793500 . + . ID=gene-LPH40_RS07135;Name=LPH40_RS07135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07135;old_locus_tag=LPH40_07135 NZ_CP087685.1 Protein Homology CDS 1792454 1793500 . + 0 ID=cds-WP_038270773.1;Parent=gene-LPH40_RS07135;Dbxref=Genbank:WP_038270773.1;Name=WP_038270773.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852338.1;locus_tag=LPH40_RS07135;product=alpha/beta fold hydrolase;protein_id=WP_038270773.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1794052 1794201 . + . ID=gene-LPH40_RS07140;Name=LPH40_RS07140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07140;old_locus_tag=LPH40_07140 NZ_CP087685.1 GeneMarkS-2+ CDS 1794052 1794201 . + 0 ID=cds-WP_230428153.1;Parent=gene-LPH40_RS07140;Dbxref=Genbank:WP_230428153.1;Name=WP_230428153.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07140;product=hypothetical protein;protein_id=WP_230428153.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1794334 1794732 . + . ID=gene-LPH40_RS07145;Name=LPH40_RS07145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07145;old_locus_tag=LPH40_07145 NZ_CP087685.1 GeneMarkS-2+ CDS 1794334 1794732 . + 0 ID=cds-WP_051482281.1;Parent=gene-LPH40_RS07145;Dbxref=Genbank:WP_051482281.1;Name=WP_051482281.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07145;product=hypothetical protein;protein_id=WP_051482281.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1794845 1795000 . + . ID=gene-LPH40_RS07150;Name=LPH40_RS07150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07150;old_locus_tag=LPH40_07150 NZ_CP087685.1 GeneMarkS-2+ CDS 1794845 1795000 . + 0 ID=cds-WP_160199325.1;Parent=gene-LPH40_RS07150;Dbxref=Genbank:WP_160199325.1;Name=WP_160199325.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07150;product=hypothetical protein;protein_id=WP_160199325.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1795030 1796274 . - . ID=gene-LPH40_RS07155;Name=LPH40_RS07155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07155;old_locus_tag=LPH40_07155 NZ_CP087685.1 Protein Homology CDS 1795030 1796274 . - 0 ID=cds-WP_038270772.1;Parent=gene-LPH40_RS07155;Dbxref=Genbank:WP_038270772.1;Name=WP_038270772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097573.1;locus_tag=LPH40_RS07155;product=MFS transporter;protein_id=WP_038270772.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1796271 1796711 . - . ID=gene-LPH40_RS07160;Name=LPH40_RS07160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07160;old_locus_tag=LPH40_07160 NZ_CP087685.1 Protein Homology CDS 1796271 1796711 . - 0 ID=cds-WP_038270771.1;Parent=gene-LPH40_RS07160;Dbxref=Genbank:WP_038270771.1;Name=WP_038270771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087898.1;locus_tag=LPH40_RS07160;product=SufE family protein;protein_id=WP_038270771.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1796930 1798330 . - . ID=gene-LPH40_RS07165;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=LPH40_RS07165;old_locus_tag=LPH40_07165 NZ_CP087685.1 Protein Homology CDS 1796930 1798330 . - 0 ID=cds-WP_038270770.1;Parent=gene-LPH40_RS07165;Dbxref=Genbank:WP_038270770.1;Name=WP_038270770.1;Ontology_term=GO:0006423,GO:0004817,GO:0005737;gbkey=CDS;gene=cysS;go_component=cytoplasm|0005737||IEA;go_function=cysteine-tRNA ligase activity|0004817||IEA;go_process=cysteinyl-tRNA aminoacylation|0006423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852341.1;locus_tag=LPH40_RS07165;product=cysteine--tRNA ligase;protein_id=WP_038270770.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1798487 1799029 . + . ID=gene-LPH40_RS07170;Name=LPH40_RS07170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07170;old_locus_tag=LPH40_07170 NZ_CP087685.1 Protein Homology CDS 1798487 1799029 . + 0 ID=cds-WP_038270769.1;Parent=gene-LPH40_RS07170;Dbxref=Genbank:WP_038270769.1;Name=WP_038270769.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607601.1;locus_tag=LPH40_RS07170;product=hypothetical protein;protein_id=WP_038270769.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1799407 1800417 . + . ID=gene-LPH40_RS07175;Name=LPH40_RS07175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07175;old_locus_tag=LPH40_07175 NZ_CP087685.1 Protein Homology CDS 1799407 1800417 . + 0 ID=cds-WP_114867062.1;Parent=gene-LPH40_RS07175;Dbxref=Genbank:WP_114867062.1;Name=WP_114867062.1;Ontology_term=GO:0042450,GO:0016597,GO:0043857;gbkey=CDS;go_function=amino acid binding|0016597||IEA,N-acetylornithine carbamoyltransferase activity|0043857||IEA;go_process=arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087894.1;locus_tag=LPH40_RS07175;product=N-acetylornithine carbamoyltransferase;protein_id=WP_114867062.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1800446 1801651 . + . ID=gene-LPH40_RS07180;Name=LPH40_RS07180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07180;old_locus_tag=LPH40_07180 NZ_CP087685.1 Protein Homology CDS 1800446 1801651 . + 0 ID=cds-WP_038270767.1;Parent=gene-LPH40_RS07180;Dbxref=Genbank:WP_038270767.1;Name=WP_038270767.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097576.1;locus_tag=LPH40_RS07180;product=argininosuccinate synthase;protein_id=WP_038270767.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1802399 1803490 . + . ID=gene-LPH40_RS07185;Name=LPH40_RS07185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07185;old_locus_tag=LPH40_07185 NZ_CP087685.1 Protein Homology CDS 1802399 1803490 . + 0 ID=cds-WP_038270765.1;Parent=gene-LPH40_RS07185;Dbxref=Genbank:WP_038270765.1;Name=WP_038270765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852343.1;locus_tag=LPH40_RS07185;product=acetylornithine deacetylase;protein_id=WP_038270765.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1803555 1804871 . + . ID=gene-LPH40_RS07190;Name=LPH40_RS07190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07190;old_locus_tag=LPH40_07190 NZ_CP087685.1 Protein Homology CDS 1803555 1804871 . + 0 ID=cds-WP_038270764.1;Parent=gene-LPH40_RS07190;Dbxref=Genbank:WP_038270764.1;Name=WP_038270764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085241.1;locus_tag=LPH40_RS07190;product=acetylglutamate kinase;protein_id=WP_038270764.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1804900 1805100 . - . ID=gene-LPH40_RS07195;Name=LPH40_RS07195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07195;old_locus_tag=LPH40_07195 NZ_CP087685.1 GeneMarkS-2+ CDS 1804900 1805100 . - 0 ID=cds-WP_152536591.1;Parent=gene-LPH40_RS07195;Dbxref=Genbank:WP_152536591.1;Name=WP_152536591.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07195;product=hypothetical protein;protein_id=WP_152536591.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1805182 1806138 . + . ID=gene-LPH40_RS07200;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=LPH40_RS07200;old_locus_tag=LPH40_07200 NZ_CP087685.1 Protein Homology CDS 1805182 1806138 . + 0 ID=cds-WP_038270762.1;Parent=gene-LPH40_RS07200;Dbxref=Genbank:WP_038270762.1;Name=WP_038270762.1;Ontology_term=GO:0006592,GO:0003942;gbkey=CDS;gene=argC;go_function=N-acetyl-gamma-glutamyl-phosphate reductase activity|0003942||IEA;go_process=ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006378490.1;locus_tag=LPH40_RS07200;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=WP_038270762.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1806215 1807543 . + . ID=gene-LPH40_RS07205;Name=argH;gbkey=Gene;gene=argH;gene_biotype=protein_coding;locus_tag=LPH40_RS07205;old_locus_tag=LPH40_07205 NZ_CP087685.1 Protein Homology CDS 1806215 1807543 . + 0 ID=cds-WP_038270761.1;Parent=gene-LPH40_RS07205;Dbxref=Genbank:WP_038270761.1;Name=WP_038270761.1;Ontology_term=GO:0042450,GO:0004056;gbkey=CDS;gene=argH;go_function=argininosuccinate lyase activity|0004056||IEA;go_process=arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087890.1;locus_tag=LPH40_RS07205;product=argininosuccinate lyase;protein_id=WP_038270761.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1807856 1808005 . + . ID=gene-LPH40_RS07210;Name=LPH40_RS07210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07210;old_locus_tag=LPH40_07210 NZ_CP087685.1 GeneMarkS-2+ CDS 1807856 1808005 . + 0 ID=cds-WP_160165150.1;Parent=gene-LPH40_RS07210;Dbxref=Genbank:WP_160165150.1;Name=WP_160165150.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07210;product=hypothetical protein;protein_id=WP_160165150.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1808018 1809178 . + . ID=gene-LPH40_RS07215;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=LPH40_RS07215;old_locus_tag=LPH40_07215 NZ_CP087685.1 Protein Homology CDS 1808018 1809178 . + 0 ID=cds-WP_038270760.1;Parent=gene-LPH40_RS07215;Dbxref=Genbank:WP_038270760.1;Name=WP_038270760.1;Ontology_term=GO:0006561,GO:0004349;gbkey=CDS;gene=proB;go_function=glutamate 5-kinase activity|0004349||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051522.1;locus_tag=LPH40_RS07215;product=glutamate 5-kinase;protein_id=WP_038270760.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1809632 1810879 . + . ID=gene-LPH40_RS07220;Name=LPH40_RS07220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07220;old_locus_tag=LPH40_07220 NZ_CP087685.1 Protein Homology CDS 1809632 1810879 . + 0 ID=cds-WP_038270853.1;Parent=gene-LPH40_RS07220;Dbxref=Genbank:WP_038270853.1;Name=WP_038270853.1;Ontology_term=GO:0006561,GO:0004350,GO:0016620;gbkey=CDS;go_function=glutamate-5-semialdehyde dehydrogenase activity|0004350||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017910533.1;locus_tag=LPH40_RS07220;product=glutamate-5-semialdehyde dehydrogenase;protein_id=WP_038270853.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1811576 1811944 . + . ID=gene-LPH40_RS07225;Name=LPH40_RS07225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07225;old_locus_tag=LPH40_07225 NZ_CP087685.1 Protein Homology CDS 1811576 1811944 . + 0 ID=cds-WP_038270759.1;Parent=gene-LPH40_RS07225;Dbxref=Genbank:WP_038270759.1;Name=WP_038270759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087886.1;locus_tag=LPH40_RS07225;product=hypothetical protein;protein_id=WP_038270759.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1812168 1812728 . + . ID=gene-LPH40_RS07230;Name=LPH40_RS07230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07230;old_locus_tag=LPH40_07230 NZ_CP087685.1 Protein Homology CDS 1812168 1812728 . + 0 ID=cds-WP_038270758.1;Parent=gene-LPH40_RS07230;Dbxref=Genbank:WP_038270758.1;Name=WP_038270758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005220837.1;locus_tag=LPH40_RS07230;product=recombinase family protein;protein_id=WP_038270758.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1812731 1815554 . + . ID=gene-LPH40_RS07235;Name=LPH40_RS07235;end_range=1815554,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07235;old_locus_tag=LPH40_07235;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1812731 1815554 . + 0 ID=cds-LPH40_RS07235;Parent=gene-LPH40_RS07235;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=1815554,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014834018.1;locus_tag=LPH40_RS07235;partial=true;product=Tn3 family transposase;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1815694 1815834 . + . ID=gene-LPH40_RS07240;Name=LPH40_RS07240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07240;old_locus_tag=LPH40_07240 NZ_CP087685.1 GeneMarkS-2+ CDS 1815694 1815834 . + 0 ID=cds-WP_160165149.1;Parent=gene-LPH40_RS07240;Dbxref=Genbank:WP_160165149.1;Name=WP_160165149.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07240;product=hypothetical protein;protein_id=WP_160165149.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1816221 1817231 . - . ID=gene-LPH40_RS07245;Name=LPH40_RS07245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07245;old_locus_tag=LPH40_07245 NZ_CP087685.1 Protein Homology CDS 1816221 1817231 . - 0 ID=cds-WP_038270757.1;Parent=gene-LPH40_RS07245;Dbxref=Genbank:WP_038270757.1;Name=WP_038270757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895227.1;locus_tag=LPH40_RS07245;product=serine protease;protein_id=WP_038270757.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1818467 1819858 . + . ID=gene-LPH40_RS07250;Name=LPH40_RS07250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07250;old_locus_tag=LPH40_07250 NZ_CP087685.1 Protein Homology CDS 1818467 1819858 . + 0 ID=cds-WP_051482280.1;Parent=gene-LPH40_RS07250;Dbxref=Genbank:WP_051482280.1;Name=WP_051482280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160583.1;locus_tag=LPH40_RS07250;product=right-handed parallel beta-helix repeat-containing protein;protein_id=WP_051482280.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1819931 1820593 . - . ID=gene-LPH40_RS07255;Name=LPH40_RS07255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07255;old_locus_tag=LPH40_07255 NZ_CP087685.1 Protein Homology CDS 1819931 1820593 . - 0 ID=cds-WP_268746643.1;Parent=gene-LPH40_RS07255;Dbxref=Genbank:WP_268746643.1;Name=WP_268746643.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012464.2;locus_tag=LPH40_RS07255;product=recombinase family protein;protein_id=WP_268746643.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1820680 1820883 . - . ID=gene-LPH40_RS07260;Name=LPH40_RS07260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07260;old_locus_tag=LPH40_07260 NZ_CP087685.1 Protein Homology CDS 1820680 1820883 . - 0 ID=cds-WP_200866186.1;Parent=gene-LPH40_RS07260;Dbxref=Genbank:WP_200866186.1;Name=WP_200866186.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016876.2;locus_tag=LPH40_RS07260;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_200866186.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1820880 1821074 . - . ID=gene-LPH40_RS07265;Name=LPH40_RS07265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07265;old_locus_tag=LPH40_07265 NZ_CP087685.1 Protein Homology CDS 1820880 1821074 . - 0 ID=cds-WP_038270756.1;Parent=gene-LPH40_RS07265;Dbxref=Genbank:WP_038270756.1;Name=WP_038270756.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408511.1;locus_tag=LPH40_RS07265;product=hypothetical protein;protein_id=WP_038270756.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1821270 1821713 . + . ID=gene-LPH40_RS07270;Name=LPH40_RS07270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07270;old_locus_tag=LPH40_07270;partial=true;pseudo=true;start_range=.,1821270 NZ_CP087685.1 Protein Homology CDS 1821270 1821713 . + 0 ID=cds-LPH40_RS07270;Parent=gene-LPH40_RS07270;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025079.2;locus_tag=LPH40_RS07270;partial=true;product=DUF4158 domain-containing protein;pseudo=true;start_range=.,1821270;transl_table=11 NZ_CP087685.1 RefSeq gene 1821752 1822222 . + . ID=gene-LPH40_RS07275;Name=LPH40_RS07275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07275;old_locus_tag=LPH40_07275 NZ_CP087685.1 GeneMarkS-2+ CDS 1821752 1822222 . + 0 ID=cds-WP_230428154.1;Parent=gene-LPH40_RS07275;Dbxref=Genbank:WP_230428154.1;Name=WP_230428154.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07275;product=hypothetical protein;protein_id=WP_230428154.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1822356 1822439 . + . ID=gene-LPH40_RS07280;Name=LPH40_RS07280;end_range=1822439,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07280;old_locus_tag=LPH40_07280;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1822356 1822439 . + 0 ID=cds-LPH40_RS07280;Parent=gene-LPH40_RS07280;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1822439,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017757.2;locus_tag=LPH40_RS07280;partial=true;product=type II toxin-antitoxin system RelE/ParE family toxin;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1822551 1822832 . + . ID=gene-LPH40_RS07285;Name=LPH40_RS07285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07285;old_locus_tag=LPH40_07285 NZ_CP087685.1 Protein Homology CDS 1822551 1822832 . + 0 ID=cds-WP_038270748.1;Parent=gene-LPH40_RS07285;Dbxref=Genbank:WP_038270748.1;Name=WP_038270748.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091355.1;locus_tag=LPH40_RS07285;product=XRE family transcriptional regulator;protein_id=WP_038270748.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1823102 1824231 . - . ID=gene-LPH40_RS07290;Name=LPH40_RS07290;end_range=1824231,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07290;old_locus_tag=LPH40_07290;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1823102 1824231 . - 0 ID=cds-LPH40_RS07290;Parent=gene-LPH40_RS07290;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1824231,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337797.1;locus_tag=LPH40_RS07290;partial=true;product=DUF5710 domain-containing protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1824407 1825244 . + . ID=gene-LPH40_RS07295;Name=LPH40_RS07295;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07295;old_locus_tag=LPH40_07295;partial=true;pseudo=true;start_range=.,1824407 NZ_CP087685.1 Protein Homology CDS 1824407 1825244 . + 0 ID=cds-LPH40_RS07295;Parent=gene-LPH40_RS07295;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161248.1;locus_tag=LPH40_RS07295;partial=true;product=VirB8/TrbF family protein;pseudo=true;start_range=.,1824407;transl_table=11 NZ_CP087685.1 RefSeq gene 1825260 1826150 . + . ID=gene-LPH40_RS07300;Name=trbG;gbkey=Gene;gene=trbG;gene_biotype=protein_coding;locus_tag=LPH40_RS07300;old_locus_tag=LPH40_07300 NZ_CP087685.1 Protein Homology CDS 1825260 1826150 . + 0 ID=cds-WP_038270744.1;Parent=gene-LPH40_RS07300;Dbxref=Genbank:WP_038270744.1;Name=WP_038270744.1;Ontology_term=GO:0009291;gbkey=CDS;gene=trbG;go_process=unidirectional conjugation|0009291||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086695.1;locus_tag=LPH40_RS07300;product=P-type conjugative transfer protein TrbG;protein_id=WP_038270744.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1826270 1826550 . + . ID=gene-LPH40_RS07305;Name=LPH40_RS07305;end_range=1826550,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07305;old_locus_tag=LPH40_07305;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1826270 1826550 . + 0 ID=cds-LPH40_RS07305;Parent=gene-LPH40_RS07305;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1826550,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018934.2;locus_tag=LPH40_RS07305;partial=true;product=conjugal transfer protein TrbH;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1826588 1827442 . + . ID=gene-LPH40_RS07310;Name=LPH40_RS07310;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07310;old_locus_tag=LPH40_07310;partial=true;pseudo=true;start_range=.,1826588 NZ_CP087685.1 Protein Homology CDS 1826588 1827442 . + 0 ID=cds-LPH40_RS07310;Parent=gene-LPH40_RS07310;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091515.1;locus_tag=LPH40_RS07310;partial=true;product=conjugal transfer protein TrbI;pseudo=true;start_range=.,1826588;transl_table=11 NZ_CP087685.1 RefSeq gene 1827461 1828234 . + . ID=gene-LPH40_RS07315;Name=trbJ;gbkey=Gene;gene=trbJ;gene_biotype=protein_coding;locus_tag=LPH40_RS07315;old_locus_tag=LPH40_07315 NZ_CP087685.1 Protein Homology CDS 1827461 1828234 . + 0 ID=cds-WP_038270743.1;Parent=gene-LPH40_RS07315;Dbxref=Genbank:WP_038270743.1;Name=WP_038270743.1;gbkey=CDS;gene=trbJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086702.1;locus_tag=LPH40_RS07315;product=P-type conjugative transfer protein TrbJ;protein_id=WP_038270743.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1828251 1828487 . + . ID=gene-LPH40_RS07320;Name=LPH40_RS07320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07320;old_locus_tag=LPH40_07320 NZ_CP087685.1 Protein Homology CDS 1828251 1828487 . + 0 ID=cds-WP_081755410.1;Parent=gene-LPH40_RS07320;Dbxref=Genbank:WP_081755410.1;Name=WP_081755410.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033894.1;locus_tag=LPH40_RS07320;product=EexN family lipoprotein;protein_id=WP_081755410.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1828504 1829952 . + . ID=gene-LPH40_RS07325;Name=trbL;gbkey=Gene;gene=trbL;gene_biotype=protein_coding;locus_tag=LPH40_RS07325;old_locus_tag=LPH40_07325 NZ_CP087685.1 Protein Homology CDS 1828504 1829952 . + 0 ID=cds-WP_230428155.1;Parent=gene-LPH40_RS07325;Dbxref=Genbank:WP_230428155.1;Name=WP_230428155.1;Ontology_term=GO:0009291;gbkey=CDS;gene=trbL;go_process=unidirectional conjugation|0009291||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894502.1;locus_tag=LPH40_RS07325;product=P-type conjugative transfer protein TrbL;protein_id=WP_230428155.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1829988 1830209 . + . ID=gene-LPH40_RS07330;Name=LPH40_RS07330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07330;old_locus_tag=LPH40_07330 NZ_CP087685.1 GeneMarkS-2+ CDS 1829988 1830209 . + 0 ID=cds-WP_038270739.1;Parent=gene-LPH40_RS07330;Dbxref=Genbank:WP_038270739.1;Name=WP_038270739.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07330;product=hypothetical protein;protein_id=WP_038270739.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1830211 1830819 . + . ID=gene-LPH40_RS07335;Name=LPH40_RS07335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07335;old_locus_tag=LPH40_07335 NZ_CP087685.1 Protein Homology CDS 1830211 1830819 . + 0 ID=cds-WP_038270737.1;Parent=gene-LPH40_RS07335;Dbxref=Genbank:WP_038270737.1;Name=WP_038270737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010895232.1;locus_tag=LPH40_RS07335;product=transglycosylase SLT domain-containing protein;protein_id=WP_038270737.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1830829 1832313 . - . ID=gene-LPH40_RS07340;Name=LPH40_RS07340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07340;old_locus_tag=LPH40_07340 NZ_CP087685.1 Protein Homology CDS 1830829 1832313 . - 0 ID=cds-WP_081755409.1;Parent=gene-LPH40_RS07340;Dbxref=Genbank:WP_081755409.1;Name=WP_081755409.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: protein motif:HMM:NF024842.2;locus_tag=LPH40_RS07340;product=FAD-dependent oxidoreductase;protein_id=WP_081755409.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1832310 1833032 . - . ID=gene-LPH40_RS07345;Name=LPH40_RS07345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07345;old_locus_tag=LPH40_07345 NZ_CP087685.1 Protein Homology CDS 1832310 1833032 . - 0 ID=cds-WP_230428156.1;Parent=gene-LPH40_RS07345;Dbxref=Genbank:WP_230428156.1;Name=WP_230428156.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997681.1;locus_tag=LPH40_RS07345;product=cupin domain-containing protein;protein_id=WP_230428156.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1833049 1833390 . - . ID=gene-LPH40_RS07350;Name=LPH40_RS07350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07350;old_locus_tag=LPH40_07350 NZ_CP087685.1 Protein Homology CDS 1833049 1833390 . - 0 ID=cds-WP_200866190.1;Parent=gene-LPH40_RS07350;Dbxref=Genbank:WP_200866190.1;Name=WP_200866190.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997683.1;locus_tag=LPH40_RS07350;product=carboxymuconolactone decarboxylase family protein;protein_id=WP_200866190.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1833506 1834039 . - . ID=gene-LPH40_RS07355;Name=LPH40_RS07355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07355;old_locus_tag=LPH40_07355 NZ_CP087685.1 Protein Homology CDS 1833506 1834039 . - 0 ID=cds-WP_038270735.1;Parent=gene-LPH40_RS07355;Dbxref=Genbank:WP_038270735.1;Name=WP_038270735.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014608.2;locus_tag=LPH40_RS07355;product=OsmC family protein;protein_id=WP_038270735.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1834036 1834329 . - . ID=gene-LPH40_RS07360;Name=LPH40_RS07360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07360;old_locus_tag=LPH40_07360 NZ_CP087685.1 GeneMarkS-2+ CDS 1834036 1834329 . - 0 ID=cds-WP_200866185.1;Parent=gene-LPH40_RS07360;Dbxref=Genbank:WP_200866185.1;Name=WP_200866185.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07360;product=hypothetical protein;protein_id=WP_200866185.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1834395 1835168 . - . ID=gene-LPH40_RS07365;Name=LPH40_RS07365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07365;old_locus_tag=LPH40_07365 NZ_CP087685.1 Protein Homology CDS 1834395 1835168 . - 0 ID=cds-WP_038270733.1;Parent=gene-LPH40_RS07365;Dbxref=Genbank:WP_038270733.1;Name=WP_038270733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020203121.1;locus_tag=LPH40_RS07365;product=SDR family oxidoreductase;protein_id=WP_038270733.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1835366 1836283 . + . ID=gene-LPH40_RS07370;Name=gcvA;gbkey=Gene;gene=gcvA;gene_biotype=protein_coding;locus_tag=LPH40_RS07370;old_locus_tag=LPH40_07370 NZ_CP087685.1 Protein Homology CDS 1835366 1836283 . + 0 ID=cds-WP_038270732.1;Parent=gene-LPH40_RS07370;Dbxref=Genbank:WP_038270732.1;Name=WP_038270732.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=gcvA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020203122.1;locus_tag=LPH40_RS07370;product=transcriptional regulator GcvA;protein_id=WP_038270732.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1836311 1836622 . - . ID=gene-LPH40_RS07375;Name=LPH40_RS07375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07375;old_locus_tag=LPH40_07375 NZ_CP087685.1 Protein Homology CDS 1836311 1836622 . - 0 ID=cds-WP_038270731.1;Parent=gene-LPH40_RS07375;Dbxref=Genbank:WP_038270731.1;Name=WP_038270731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850413.1;locus_tag=LPH40_RS07375;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_038270731.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1836619 1836870 . - . ID=gene-LPH40_RS07380;Name=LPH40_RS07380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07380;old_locus_tag=LPH40_07380 NZ_CP087685.1 Protein Homology CDS 1836619 1836870 . - 0 ID=cds-WP_038270730.1;Parent=gene-LPH40_RS07380;Dbxref=Genbank:WP_038270730.1;Name=WP_038270730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004167341.1;locus_tag=LPH40_RS07380;product=antitoxin;protein_id=WP_038270730.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1837093 1837686 . + . ID=gene-LPH40_RS07385;Name=LPH40_RS07385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07385;old_locus_tag=LPH40_07385 NZ_CP087685.1 Protein Homology CDS 1837093 1837686 . + 0 ID=cds-WP_038270729.1;Parent=gene-LPH40_RS07385;Dbxref=Genbank:WP_038270729.1;Name=WP_038270729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012435588.1;locus_tag=LPH40_RS07385;product=recombinase family protein;protein_id=WP_038270729.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1837683 1838994 . + . ID=gene-LPH40_RS07390;Name=LPH40_RS07390;end_range=1838994,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07390;old_locus_tag=LPH40_07390;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1837683 1838994 . + 0 ID=cds-LPH40_RS07390;Parent=gene-LPH40_RS07390;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1838994,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015060658.1;locus_tag=LPH40_RS07390;partial=true;product=DUF4158 domain-containing protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1839136 1839507 . + . ID=gene-LPH40_RS07395;Name=LPH40_RS07395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07395;old_locus_tag=LPH40_07395 NZ_CP087685.1 Protein Homology CDS 1839136 1839507 . + 0 ID=cds-WP_038270728.1;Parent=gene-LPH40_RS07395;Dbxref=Genbank:WP_038270728.1;Name=WP_038270728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019465260.1;locus_tag=LPH40_RS07395;product=TIR domain-containing protein;protein_id=WP_038270728.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1839507 1840493 . + . ID=gene-LPH40_RS07400;Name=LPH40_RS07400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07400;old_locus_tag=LPH40_07400 NZ_CP087685.1 Protein Homology CDS 1839507 1840493 . + 0 ID=cds-WP_038270726.1;Parent=gene-LPH40_RS07400;Dbxref=Genbank:WP_038270726.1;Name=WP_038270726.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011979481.1;locus_tag=LPH40_RS07400;product=caspase family protein;protein_id=WP_038270726.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1840560 1840706 . + . ID=gene-LPH40_RS07405;Name=LPH40_RS07405;end_range=1840706,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07405;old_locus_tag=LPH40_07405;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1840560 1840706 . + 0 ID=cds-LPH40_RS07405;Parent=gene-LPH40_RS07405;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1840706,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001247892.1;locus_tag=LPH40_RS07405;partial=true;product=nucleotidyltransferase;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1840672 1841139 . + . ID=gene-LPH40_RS07410;Name=LPH40_RS07410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07410;old_locus_tag=LPH40_07410 NZ_CP087685.1 Protein Homology CDS 1840672 1841139 . + 0 ID=cds-WP_230428272.1;Parent=gene-LPH40_RS07410;Dbxref=Genbank:WP_230428272.1;Name=WP_230428272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012435588.1;locus_tag=LPH40_RS07410;product=recombinase family protein;protein_id=WP_230428272.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1841314 1841550 . - . ID=gene-LPH40_RS07415;Name=LPH40_RS07415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07415;old_locus_tag=LPH40_07415 NZ_CP087685.1 GeneMarkS-2+ CDS 1841314 1841550 . - 0 ID=cds-WP_152536590.1;Parent=gene-LPH40_RS07415;Dbxref=Genbank:WP_152536590.1;Name=WP_152536590.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07415;product=hypothetical protein;protein_id=WP_152536590.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1841555 1842166 . - . ID=gene-LPH40_RS07420;Name=LPH40_RS07420;end_range=1842166,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07420;old_locus_tag=LPH40_07420;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1841555 1842166 . - 0 ID=cds-LPH40_RS07420;Parent=gene-LPH40_RS07420;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1842166,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894515.1;locus_tag=LPH40_RS07420;partial=true;product=toprim domain-containing protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1842512 1843012 . + . ID=gene-LPH40_RS07425;Name=LPH40_RS07425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07425;old_locus_tag=LPH40_07425 NZ_CP087685.1 Protein Homology CDS 1842512 1843012 . + 0 ID=cds-WP_038270725.1;Parent=gene-LPH40_RS07425;Dbxref=Genbank:WP_038270725.1;Name=WP_038270725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087880.1;locus_tag=LPH40_RS07425;product=hypothetical protein;protein_id=WP_038270725.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1843030 1843224 . + . ID=gene-LPH40_RS07430;Name=LPH40_RS07430;end_range=1843224,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07430;old_locus_tag=LPH40_07430;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1843030 1843224 . + 0 ID=cds-LPH40_RS07430;Parent=gene-LPH40_RS07430;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1843224,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337617.1;locus_tag=LPH40_RS07430;partial=true;product=RTX toxin;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1843478 1843987 . + . ID=gene-LPH40_RS07435;Name=LPH40_RS07435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07435;old_locus_tag=LPH40_07435 NZ_CP087685.1 Protein Homology CDS 1843478 1843987 . + 0 ID=cds-WP_038270724.1;Parent=gene-LPH40_RS07435;Dbxref=Genbank:WP_038270724.1;Name=WP_038270724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087886.1;locus_tag=LPH40_RS07435;product=hypothetical protein;protein_id=WP_038270724.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1844005 1844190 . + . ID=gene-LPH40_RS07440;Name=LPH40_RS07440;end_range=1844190,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07440;old_locus_tag=LPH40_07440;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1844005 1844190 . + 0 ID=cds-LPH40_RS07440;Parent=gene-LPH40_RS07440;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1844190,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087883.1;locus_tag=LPH40_RS07440;partial=true;product=RTX toxin;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1844454 1844960 . + . ID=gene-LPH40_RS07445;Name=LPH40_RS07445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07445;old_locus_tag=LPH40_07445 NZ_CP087685.1 Protein Homology CDS 1844454 1844960 . + 0 ID=cds-WP_038270723.1;Parent=gene-LPH40_RS07445;Dbxref=Genbank:WP_038270723.1;Name=WP_038270723.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087886.1;locus_tag=LPH40_RS07445;product=hypothetical protein;protein_id=WP_038270723.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1844986 1849287 . + . ID=gene-LPH40_RS07450;Name=LPH40_RS07450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07450;old_locus_tag=LPH40_07450 NZ_CP087685.1 Protein Homology CDS 1844986 1849287 . + 0 ID=cds-WP_114867063.1;Parent=gene-LPH40_RS07450;Dbxref=Genbank:WP_114867063.1;Name=WP_114867063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097580.1;locus_tag=LPH40_RS07450;product=calcium-binding protein;protein_id=WP_114867063.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1849531 1850034 . - . ID=gene-LPH40_RS07455;Name=tadA;gbkey=Gene;gene=tadA;gene_biotype=protein_coding;locus_tag=LPH40_RS07455;old_locus_tag=LPH40_07455 NZ_CP087685.1 Protein Homology CDS 1849531 1850034 . - 0 ID=cds-WP_051482387.1;Parent=gene-LPH40_RS07455;Dbxref=Genbank:WP_051482387.1;Name=WP_051482387.1;Ontology_term=GO:0002100,GO:0008251,GO:0008270;gbkey=CDS;gene=tadA;go_function=tRNA-specific adenosine deaminase activity|0008251||IEA,zinc ion binding|0008270||IEA;go_process=tRNA wobble adenosine to inosine editing|0002100||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852939.1;locus_tag=LPH40_RS07455;product=tRNA adenosine(34) deaminase TadA;protein_id=WP_051482387.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1850042 1850524 . - . ID=gene-LPH40_RS07460;Name=mntR;gbkey=Gene;gene=mntR;gene_biotype=protein_coding;locus_tag=LPH40_RS07460;old_locus_tag=LPH40_07460 NZ_CP087685.1 Protein Homology CDS 1850042 1850524 . - 0 ID=cds-WP_038272949.1;Parent=gene-LPH40_RS07460;Dbxref=Genbank:WP_038272949.1;Name=WP_038272949.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0046914,GO:0046983;gbkey=CDS;gene=mntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,transition metal ion binding|0046914||IEA,protein dimerization activity|0046983||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097582.1;locus_tag=LPH40_RS07460;product=manganese-binding transcriptional regulator MntR;protein_id=WP_038272949.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1850762 1852108 . + . ID=gene-LPH40_RS07465;Name=LPH40_RS07465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07465;old_locus_tag=LPH40_07465 NZ_CP087685.1 Protein Homology CDS 1850762 1852108 . + 0 ID=cds-WP_038272931.1;Parent=gene-LPH40_RS07465;Dbxref=Genbank:WP_038272931.1;Name=WP_038272931.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097583.1;locus_tag=LPH40_RS07465;product=Nramp family divalent metal transporter;protein_id=WP_038272931.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1853040 1853687 . + . ID=gene-LPH40_RS07470;Name=LPH40_RS07470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07470;old_locus_tag=LPH40_07470 NZ_CP087685.1 Protein Homology CDS 1853040 1853687 . + 0 ID=cds-WP_051482389.1;Parent=gene-LPH40_RS07470;Dbxref=Genbank:WP_051482389.1;Name=WP_051482389.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023605.2;locus_tag=LPH40_RS07470;product=NotI family restriction endonuclease;protein_id=WP_051482389.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1853871 1854896 . + . ID=gene-LPH40_RS07475;Name=LPH40_RS07475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07475;old_locus_tag=LPH40_07475 NZ_CP087685.1 GeneMarkS-2+ CDS 1853871 1854896 . + 0 ID=cds-WP_200866218.1;Parent=gene-LPH40_RS07475;Dbxref=Genbank:WP_200866218.1;Name=WP_200866218.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07475;product=DNA adenine methylase;protein_id=WP_200866218.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1856713 1857516 . - . ID=gene-LPH40_RS07480;Name=LPH40_RS07480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07480;old_locus_tag=LPH40_07480 NZ_CP087685.1 Protein Homology CDS 1856713 1857516 . - 0 ID=cds-WP_051482390.1;Parent=gene-LPH40_RS07480;Dbxref=Genbank:WP_051482390.1;Name=WP_051482390.1;Ontology_term=GO:0016598,GO:0004057,GO:0008914;gbkey=CDS;go_function=arginyltransferase activity|0004057||IEA,leucyltransferase activity|0008914||IEA;go_process=protein arginylation|0016598||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088071.1;locus_tag=LPH40_RS07480;product=arginyltransferase;protein_id=WP_051482390.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1858098 1858589 . - . ID=gene-LPH40_RS07485;Name=LPH40_RS07485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07485;old_locus_tag=LPH40_07485 NZ_CP087685.1 Protein Homology CDS 1858098 1858589 . - 0 ID=cds-WP_038272934.1;Parent=gene-LPH40_RS07485;Dbxref=Genbank:WP_038272934.1;Name=WP_038272934.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852934.1;locus_tag=LPH40_RS07485;product=DUF2007 domain-containing protein;protein_id=WP_038272934.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1858593 1859429 . - . ID=gene-LPH40_RS07490;Name=tesB;gbkey=Gene;gene=tesB;gene_biotype=protein_coding;locus_tag=LPH40_RS07490;old_locus_tag=LPH40_07490 NZ_CP087685.1 Protein Homology CDS 1858593 1859429 . - 0 ID=cds-WP_038272936.1;Parent=gene-LPH40_RS07490;Dbxref=Genbank:WP_038272936.1;Name=WP_038272936.1;Ontology_term=GO:0006637,GO:0047617;gbkey=CDS;gene=tesB;go_function=acyl-CoA hydrolase activity|0047617||IEA;go_process=acyl-CoA metabolic process|0006637||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852933.1;locus_tag=LPH40_RS07490;product=acyl-CoA thioesterase II;protein_id=WP_038272936.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1860136 1860324 . - . ID=gene-LPH40_RS07495;Name=LPH40_RS07495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07495;old_locus_tag=LPH40_07495 NZ_CP087685.1 GeneMarkS-2+ CDS 1860136 1860324 . - 0 ID=cds-WP_038272941.1;Parent=gene-LPH40_RS07495;Dbxref=Genbank:WP_038272941.1;Name=WP_038272941.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07495;product=hypothetical protein;protein_id=WP_038272941.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1861621 1861932 . - . ID=gene-LPH40_RS07500;Name=LPH40_RS07500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07500;old_locus_tag=LPH40_07500 NZ_CP087685.1 Protein Homology CDS 1861621 1861932 . - 0 ID=cds-WP_038272945.1;Parent=gene-LPH40_RS07500;Dbxref=Genbank:WP_038272945.1;Name=WP_038272945.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382447.1;locus_tag=LPH40_RS07500;product=hypothetical protein;protein_id=WP_038272945.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1862533 1862700 . - . ID=gene-LPH40_RS07505;Name=LPH40_RS07505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07505;old_locus_tag=LPH40_07505 NZ_CP087685.1 GeneMarkS-2+ CDS 1862533 1862700 . - 0 ID=cds-WP_160199297.1;Parent=gene-LPH40_RS07505;Dbxref=Genbank:WP_160199297.1;Name=WP_160199297.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07505;product=hypothetical protein;protein_id=WP_160199297.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1863056 1863508 . - . ID=gene-LPH40_RS07510;Name=LPH40_RS07510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07510;old_locus_tag=LPH40_07510 NZ_CP087685.1 GeneMarkS-2+ CDS 1863056 1863508 . - 0 ID=cds-WP_230428157.1;Parent=gene-LPH40_RS07510;Dbxref=Genbank:WP_230428157.1;Name=WP_230428157.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07510;product=hypothetical protein;protein_id=WP_230428157.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1863471 1866203 . + . ID=gene-LPH40_RS07515;Name=LPH40_RS07515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07515;old_locus_tag=LPH40_07515 NZ_CP087685.1 Protein Homology CDS 1863471 1866203 . + 0 ID=cds-WP_114867065.1;Parent=gene-LPH40_RS07515;Dbxref=Genbank:WP_114867065.1;Name=WP_114867065.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607606.1;locus_tag=LPH40_RS07515;product=S8 family serine peptidase;protein_id=WP_114867065.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1867197 1867293 . + . ID=gene-LPH40_RS07520;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=LPH40_RS07520;old_locus_tag=LPH40_07520 NZ_CP087685.1 cmsearch SRP_RNA 1867197 1867293 . + . ID=rna-LPH40_RS07520;Parent=gene-LPH40_RS07520;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS07520;product=signal recognition particle sRNA small type NZ_CP087685.1 cmsearch exon 1867197 1867293 . + . ID=exon-LPH40_RS07520-1;Parent=rna-LPH40_RS07520;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS07520;product=signal recognition particle sRNA small type NZ_CP087685.1 RefSeq gene 1869155 1869361 . - . ID=gene-LPH40_RS07525;Name=LPH40_RS07525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07525;old_locus_tag=LPH40_07525 NZ_CP087685.1 GeneMarkS-2+ CDS 1869155 1869361 . - 0 ID=cds-WP_038272450.1;Parent=gene-LPH40_RS07525;Dbxref=Genbank:WP_038272450.1;Name=WP_038272450.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07525;product=hypothetical protein;protein_id=WP_038272450.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1869358 1871319 . - . ID=gene-LPH40_RS07530;Name=LPH40_RS07530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07530;old_locus_tag=LPH40_07530 NZ_CP087685.1 Protein Homology CDS 1869358 1871319 . - 0 ID=cds-WP_038272448.1;Parent=gene-LPH40_RS07530;Dbxref=Genbank:WP_038272448.1;Name=WP_038272448.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893548.1;locus_tag=LPH40_RS07530;product=CocE/NonD family hydrolase;protein_id=WP_038272448.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1872498 1872707 . + . ID=gene-LPH40_RS07535;Name=LPH40_RS07535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07535;old_locus_tag=LPH40_07535 NZ_CP087685.1 GeneMarkS-2+ CDS 1872498 1872707 . + 0 ID=cds-WP_038272446.1;Parent=gene-LPH40_RS07535;Dbxref=Genbank:WP_038272446.1;Name=WP_038272446.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07535;product=hypothetical protein;protein_id=WP_038272446.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1873863 1876454 . - . ID=gene-LPH40_RS07540;Name=plsB;gbkey=Gene;gene=plsB;gene_biotype=protein_coding;locus_tag=LPH40_RS07540;old_locus_tag=LPH40_07540 NZ_CP087685.1 Protein Homology CDS 1873863 1876454 . - 0 ID=cds-WP_038272444.1;Parent=gene-LPH40_RS07540;Dbxref=Genbank:WP_038272444.1;Name=WP_038272444.1;Ontology_term=GO:0008654,GO:0004366;gbkey=CDS;gene=plsB;go_function=glycerol-3-phosphate O-acyltransferase activity|0004366||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085224.1;locus_tag=LPH40_RS07540;product=glycerol-3-phosphate 1-O-acyltransferase PlsB;protein_id=WP_038272444.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1876546 1876731 . - . ID=gene-LPH40_RS07545;Name=LPH40_RS07545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07545;old_locus_tag=LPH40_07545 NZ_CP087685.1 GeneMarkS-2+ CDS 1876546 1876731 . - 0 ID=cds-WP_038272442.1;Parent=gene-LPH40_RS07545;Dbxref=Genbank:WP_038272442.1;Name=WP_038272442.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07545;product=hypothetical protein;protein_id=WP_038272442.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1878867 1881893 . + . ID=gene-LPH40_RS07550;Name=LPH40_RS07550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07550;old_locus_tag=LPH40_07550 NZ_CP087685.1 Protein Homology CDS 1878867 1881893 . + 0 ID=cds-WP_038272440.1;Parent=gene-LPH40_RS07550;Dbxref=Genbank:WP_038272440.1;Name=WP_038272440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085223.1;locus_tag=LPH40_RS07550;product=TonB-dependent receptor;protein_id=WP_038272440.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1882325 1883767 . - . ID=gene-LPH40_RS07555;Name=ahcY;gbkey=Gene;gene=ahcY;gene_biotype=protein_coding;locus_tag=LPH40_RS07555;old_locus_tag=LPH40_07555 NZ_CP087685.1 Protein Homology CDS 1882325 1883767 . - 0 ID=cds-WP_038272437.1;Parent=gene-LPH40_RS07555;Dbxref=Genbank:WP_038272437.1;Name=WP_038272437.1;Ontology_term=GO:0006730,GO:0004013;gbkey=CDS;gene=ahcY;go_function=adenosylhomocysteinase activity|0004013||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035988.1;locus_tag=LPH40_RS07555;product=adenosylhomocysteinase;protein_id=WP_038272437.1;transl_table=11 NZ_CP087685.1 cmsearch riboswitch 1883808 1883895 . - . ID=id-NZ_CP087685.1:1883808..1883895;Dbxref=RFAM:RF01057;Note=S-adenosyl-L-homocysteine riboswitch;bound_moiety=S-adenosyl-L-homocysteine;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch NZ_CP087685.1 RefSeq gene 1885282 1885533 . - . ID=gene-LPH40_RS07560;Name=LPH40_RS07560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07560;old_locus_tag=LPH40_07560 NZ_CP087685.1 GeneMarkS-2+ CDS 1885282 1885533 . - 0 ID=cds-WP_114867066.1;Parent=gene-LPH40_RS07560;Dbxref=Genbank:WP_114867066.1;Name=WP_114867066.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07560;product=hypothetical protein;protein_id=WP_114867066.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1885885 1887237 . + . ID=gene-LPH40_RS07565;Name=LPH40_RS07565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07565;old_locus_tag=LPH40_07565 NZ_CP087685.1 Protein Homology CDS 1885885 1887237 . + 0 ID=cds-WP_038272456.1;Parent=gene-LPH40_RS07565;Dbxref=Genbank:WP_038272456.1;Name=WP_038272456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851854.1;locus_tag=LPH40_RS07565;product=AMP-binding protein;protein_id=WP_038272456.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1888352 1889029 . - . ID=gene-LPH40_RS07570;Name=LPH40_RS07570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07570;old_locus_tag=LPH40_07570 NZ_CP087685.1 Protein Homology CDS 1888352 1889029 . - 0 ID=cds-WP_038272433.1;Parent=gene-LPH40_RS07570;Dbxref=Genbank:WP_038272433.1;Name=WP_038272433.1;Ontology_term=GO:0003723,GO:0004523;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851856.1;locus_tag=LPH40_RS07570;product=ribonuclease HII;protein_id=WP_038272433.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1889013 1890242 . - . ID=gene-LPH40_RS07575;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=LPH40_RS07575;old_locus_tag=LPH40_07575 NZ_CP087685.1 Protein Homology CDS 1889013 1890242 . - 0 ID=cds-WP_051482370.1;Parent=gene-LPH40_RS07575;Dbxref=Genbank:WP_051482370.1;Name=WP_051482370.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;gene=lpxB;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893561.1;locus_tag=LPH40_RS07575;product=lipid-A-disaccharide synthase;protein_id=WP_051482370.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1890319 1891110 . - . ID=gene-LPH40_RS07580;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=LPH40_RS07580;old_locus_tag=LPH40_07580 NZ_CP087685.1 Protein Homology CDS 1890319 1891110 . - 0 ID=cds-WP_038272431.1;Parent=gene-LPH40_RS07580;Dbxref=Genbank:WP_038272431.1;Name=WP_038272431.1;Ontology_term=GO:0008610,GO:0008780;gbkey=CDS;gene=lpxA;go_function=acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity|0008780||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507232.1;locus_tag=LPH40_RS07580;product=acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_038272431.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1891132 1891614 . - . ID=gene-LPH40_RS07585;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=LPH40_RS07585;old_locus_tag=LPH40_07585 NZ_CP087685.1 Protein Homology CDS 1891132 1891614 . - 0 ID=cds-WP_038272429.1;Parent=gene-LPH40_RS07585;Dbxref=Genbank:WP_038272429.1;Name=WP_038272429.1;Ontology_term=GO:0006633,GO:0016836;gbkey=CDS;gene=fabZ;go_function=hydro-lyase activity|0016836||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085217.1;locus_tag=LPH40_RS07585;product=3-hydroxyacyl-ACP dehydratase FabZ;protein_id=WP_038272429.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1891611 1892627 . - . ID=gene-LPH40_RS07590;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=LPH40_RS07590;old_locus_tag=LPH40_07590 NZ_CP087685.1 Protein Homology CDS 1891611 1892627 . - 0 ID=cds-WP_038272427.1;Parent=gene-LPH40_RS07590;Dbxref=Genbank:WP_038272427.1;Name=WP_038272427.1;Ontology_term=GO:0009245,GO:0016410;gbkey=CDS;gene=lpxD;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089333.1;locus_tag=LPH40_RS07590;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_038272427.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1892826 1895180 . - . ID=gene-LPH40_RS07595;Name=bamA;gbkey=Gene;gene=bamA;gene_biotype=protein_coding;locus_tag=LPH40_RS07595;old_locus_tag=LPH40_07595 NZ_CP087685.1 Protein Homology CDS 1892826 1895180 . - 0 ID=cds-WP_038272425.1;Parent=gene-LPH40_RS07595;Dbxref=Genbank:WP_038272425.1;Name=WP_038272425.1;Ontology_term=GO:0009279;gbkey=CDS;gene=bamA;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117511.1;locus_tag=LPH40_RS07595;product=outer membrane protein assembly factor BamA;protein_id=WP_038272425.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1895275 1896609 . - . ID=gene-LPH40_RS07600;Name=rseP;gbkey=Gene;gene=rseP;gene_biotype=protein_coding;locus_tag=LPH40_RS07600;old_locus_tag=LPH40_07600 NZ_CP087685.1 Protein Homology CDS 1895275 1896609 . - 0 ID=cds-WP_038272423.1;Parent=gene-LPH40_RS07600;Dbxref=Genbank:WP_038272423.1;Name=WP_038272423.1;Ontology_term=GO:0006508,GO:0004222,GO:0016020;gbkey=CDS;gene=rseP;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089328.1;locus_tag=LPH40_RS07600;product=RIP metalloprotease RseP;protein_id=WP_038272423.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1896640 1897824 . - . ID=gene-LPH40_RS07605;Name=dxr;gbkey=Gene;gene=dxr;gene_biotype=protein_coding;locus_tag=LPH40_RS07605;old_locus_tag=LPH40_07605 NZ_CP087685.1 Protein Homology CDS 1896640 1897824 . - 0 ID=cds-WP_038272421.1;Parent=gene-LPH40_RS07605;Dbxref=Genbank:WP_038272421.1;Name=WP_038272421.1;Ontology_term=GO:0019288,GO:0030604,GO:0005737;gbkey=CDS;gene=dxr;go_component=cytoplasm|0005737||IEA;go_function=1-deoxy-D-xylulose-5-phosphate reductoisomerase activity|0030604||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851863.1;locus_tag=LPH40_RS07605;product=1-deoxy-D-xylulose-5-phosphate reductoisomerase;protein_id=WP_038272421.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1897827 1898681 . - . ID=gene-LPH40_RS07610;Name=LPH40_RS07610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07610;old_locus_tag=LPH40_07610 NZ_CP087685.1 Protein Homology CDS 1897827 1898681 . - 0 ID=cds-WP_038272419.1;Parent=gene-LPH40_RS07610;Dbxref=Genbank:WP_038272419.1;Name=WP_038272419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258695.1;locus_tag=LPH40_RS07610;product=phosphatidate cytidylyltransferase;protein_id=WP_038272419.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1898678 1899424 . - . ID=gene-LPH40_RS07615;Name=uppS;gbkey=Gene;gene=uppS;gene_biotype=protein_coding;locus_tag=LPH40_RS07615;old_locus_tag=LPH40_07615 NZ_CP087685.1 Protein Homology CDS 1898678 1899424 . - 0 ID=cds-WP_171898071.1;Parent=gene-LPH40_RS07615;Dbxref=Genbank:WP_171898071.1;Name=WP_171898071.1;Ontology_term=GO:0009252,GO:0005737;gbkey=CDS;gene=uppS;go_component=cytoplasm|0005737||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346894.1;locus_tag=LPH40_RS07615;product=polyprenyl diphosphate synthase;protein_id=WP_171898071.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1899448 1900005 . - . ID=gene-LPH40_RS07620;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=LPH40_RS07620;old_locus_tag=LPH40_07620 NZ_CP087685.1 Protein Homology CDS 1899448 1900005 . - 0 ID=cds-WP_038272416.1;Parent=gene-LPH40_RS07620;Dbxref=Genbank:WP_038272416.1;Name=WP_038272416.1;Ontology_term=GO:0006412,GO:0008135,GO:0005737;gbkey=CDS;gene=frr;go_component=cytoplasm|0005737||IEA;go_function=translation factor activity%2C RNA binding|0008135||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036562.1;locus_tag=LPH40_RS07620;product=ribosome recycling factor;protein_id=WP_038272416.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1901938 1902087 . + . ID=gene-LPH40_RS07625;Name=LPH40_RS07625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07625;old_locus_tag=LPH40_07625 NZ_CP087685.1 GeneMarkS-2+ CDS 1901938 1902087 . + 0 ID=cds-WP_162814083.1;Parent=gene-LPH40_RS07625;Dbxref=Genbank:WP_162814083.1;Name=WP_162814083.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07625;product=hypothetical protein;protein_id=WP_162814083.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1903177 1904508 . - . ID=gene-LPH40_RS07630;Name=LPH40_RS07630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07630;old_locus_tag=LPH40_07630 NZ_CP087685.1 Protein Homology CDS 1903177 1904508 . - 0 ID=cds-WP_051482394.1;Parent=gene-LPH40_RS07630;Dbxref=Genbank:WP_051482394.1;Name=WP_051482394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851867.1;locus_tag=LPH40_RS07630;product=outer membrane protein transport protein;protein_id=WP_051482394.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1904722 1905414 . + . ID=gene-LPH40_RS07635;Name=LPH40_RS07635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07635;old_locus_tag=LPH40_07635 NZ_CP087685.1 Protein Homology CDS 1904722 1905414 . + 0 ID=cds-WP_038273064.1;Parent=gene-LPH40_RS07635;Dbxref=Genbank:WP_038273064.1;Name=WP_038273064.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301614.1;locus_tag=LPH40_RS07635;product=rhomboid family intramembrane serine protease;protein_id=WP_038273064.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1905511 1905831 . + . ID=gene-LPH40_RS07640;Name=LPH40_RS07640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07640;old_locus_tag=LPH40_07640 NZ_CP087685.1 Protein Homology CDS 1905511 1905831 . + 0 ID=cds-WP_038273062.1;Parent=gene-LPH40_RS07640;Dbxref=Genbank:WP_038273062.1;Name=WP_038273062.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088873.1;locus_tag=LPH40_RS07640;product=DUF1820 family protein;protein_id=WP_038273062.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1906587 1906936 . + . ID=gene-LPH40_RS07645;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=LPH40_RS07645;old_locus_tag=LPH40_07645 NZ_CP087685.1 cmsearch RNase_P_RNA 1906587 1906936 . + . ID=rna-LPH40_RS07645;Parent=gene-LPH40_RS07645;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS07645;product=RNase P RNA component class A NZ_CP087685.1 cmsearch exon 1906587 1906936 . + . ID=exon-LPH40_RS07645-1;Parent=rna-LPH40_RS07645;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS07645;product=RNase P RNA component class A NZ_CP087685.1 RefSeq gene 1907390 1908190 . - . ID=gene-LPH40_RS07650;Name=LPH40_RS07650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07650;old_locus_tag=LPH40_07650 NZ_CP087685.1 Protein Homology CDS 1907390 1908190 . - 0 ID=cds-WP_038273060.1;Parent=gene-LPH40_RS07650;Dbxref=Genbank:WP_038273060.1;Name=WP_038273060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806608.1;locus_tag=LPH40_RS07650;product=ferritin-like domain-containing protein;protein_id=WP_038273060.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1909055 1909786 . - . ID=gene-LPH40_RS07655;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=LPH40_RS07655;old_locus_tag=LPH40_07655 NZ_CP087685.1 Protein Homology CDS 1909055 1909786 . - 0 ID=cds-WP_038271995.1;Parent=gene-LPH40_RS07655;Dbxref=Genbank:WP_038271995.1;Name=WP_038271995.1;Ontology_term=GO:0015949,GO:0033862;gbkey=CDS;gene=pyrH;go_function=UMP kinase activity|0033862||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851871.1;locus_tag=LPH40_RS07655;product=UMP kinase;protein_id=WP_038271995.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1911930 1912163 . + . ID=gene-LPH40_RS07660;Name=LPH40_RS07660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07660;old_locus_tag=LPH40_07660 NZ_CP087685.1 GeneMarkS-2+ CDS 1911930 1912163 . + 0 ID=cds-WP_038271999.1;Parent=gene-LPH40_RS07660;Dbxref=Genbank:WP_038271999.1;Name=WP_038271999.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07660;product=hypothetical protein;protein_id=WP_038271999.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1912493 1912954 . - . ID=gene-LPH40_RS07665;Name=LPH40_RS07665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07665;old_locus_tag=LPH40_07665 NZ_CP087685.1 Protein Homology CDS 1912493 1912954 . - 0 ID=cds-WP_069636215.1;Parent=gene-LPH40_RS07665;Dbxref=Genbank:WP_069636215.1;Name=WP_069636215.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024949.2;locus_tag=LPH40_RS07665;product=helix-turn-helix transcriptional regulator;protein_id=WP_069636215.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1913015 1913230 . + . ID=gene-LPH40_RS07670;Name=LPH40_RS07670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07670;old_locus_tag=LPH40_07670 NZ_CP087685.1 Protein Homology CDS 1913015 1913230 . + 0 ID=cds-WP_038272001.1;Parent=gene-LPH40_RS07670;Dbxref=Genbank:WP_038272001.1;Name=WP_038272001.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922212.1;locus_tag=LPH40_RS07670;product=hypothetical protein;protein_id=WP_038272001.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1913487 1913822 . + . ID=gene-LPH40_RS07675;Name=LPH40_RS07675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07675;old_locus_tag=LPH40_07675 NZ_CP087685.1 GeneMarkS-2+ CDS 1913487 1913822 . + 0 ID=cds-WP_038272003.1;Parent=gene-LPH40_RS07675;Dbxref=Genbank:WP_038272003.1;Name=WP_038272003.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07675;product=hypothetical protein;protein_id=WP_038272003.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1913914 1914429 . + . ID=gene-LPH40_RS07680;Name=LPH40_RS07680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07680;old_locus_tag=LPH40_07680 NZ_CP087685.1 GeneMarkS-2+ CDS 1913914 1914429 . + 0 ID=cds-WP_038272005.1;Parent=gene-LPH40_RS07680;Dbxref=Genbank:WP_038272005.1;Name=WP_038272005.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07680;product=hypothetical protein;protein_id=WP_038272005.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1914431 1915936 . + . ID=gene-LPH40_RS07685;Name=LPH40_RS07685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07685;old_locus_tag=LPH40_07685 NZ_CP087685.1 GeneMarkS-2+ CDS 1914431 1915936 . + 0 ID=cds-WP_038272007.1;Parent=gene-LPH40_RS07685;Dbxref=Genbank:WP_038272007.1;Name=WP_038272007.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07685;product=hypothetical protein;protein_id=WP_038272007.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1916196 1916630 . + . ID=gene-LPH40_RS07690;Name=LPH40_RS07690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07690;old_locus_tag=LPH40_07690 NZ_CP087685.1 GeneMarkS-2+ CDS 1916196 1916630 . + 0 ID=cds-WP_038272009.1;Parent=gene-LPH40_RS07690;Dbxref=Genbank:WP_038272009.1;Name=WP_038272009.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07690;product=hypothetical protein;protein_id=WP_038272009.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1916623 1916799 . + . ID=gene-LPH40_RS07695;Name=LPH40_RS07695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07695;old_locus_tag=LPH40_07695 NZ_CP087685.1 Protein Homology CDS 1916623 1916799 . + 0 ID=cds-WP_171898044.1;Parent=gene-LPH40_RS07695;Dbxref=Genbank:WP_171898044.1;Name=WP_171898044.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922230.1;locus_tag=LPH40_RS07695;product=hypothetical protein;protein_id=WP_171898044.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1916792 1917052 . + . ID=gene-LPH40_RS07700;Name=LPH40_RS07700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07700;old_locus_tag=LPH40_07700 NZ_CP087685.1 GeneMarkS-2+ CDS 1916792 1917052 . + 0 ID=cds-WP_038272011.1;Parent=gene-LPH40_RS07700;Dbxref=Genbank:WP_038272011.1;Name=WP_038272011.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07700;product=hypothetical protein;protein_id=WP_038272011.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1917052 1917420 . + . ID=gene-LPH40_RS07705;Name=LPH40_RS07705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07705;old_locus_tag=LPH40_07705 NZ_CP087685.1 Protein Homology CDS 1917052 1917420 . + 0 ID=cds-WP_230428159.1;Parent=gene-LPH40_RS07705;Dbxref=Genbank:WP_230428159.1;Name=WP_230428159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004636902.1;locus_tag=LPH40_RS07705;product=hypothetical protein;protein_id=WP_230428159.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1918340 1918426 . - . ID=gene-LPH40_RS07710;Name=LPH40_RS07710;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS07710;old_locus_tag=LPH40_07710 NZ_CP087685.1 tRNAscan-SE tRNA 1918340 1918426 . - . ID=rna-LPH40_RS07710;Parent=gene-LPH40_RS07710;anticodon=(pos:complement(1918390..1918392));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS07710;product=tRNA-Leu NZ_CP087685.1 tRNAscan-SE exon 1918340 1918426 . - . ID=exon-LPH40_RS07710-1;Parent=rna-LPH40_RS07710;anticodon=(pos:complement(1918390..1918392));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS07710;product=tRNA-Leu NZ_CP087685.1 RefSeq gene 1918551 1918626 . - . ID=gene-LPH40_RS07715;Name=LPH40_RS07715;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS07715;old_locus_tag=LPH40_07715 NZ_CP087685.1 tRNAscan-SE tRNA 1918551 1918626 . - . ID=rna-LPH40_RS07715;Parent=gene-LPH40_RS07715;anticodon=(pos:complement(1918590..1918592));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS07715;product=tRNA-Glu NZ_CP087685.1 tRNAscan-SE exon 1918551 1918626 . - . ID=exon-LPH40_RS07715-1;Parent=rna-LPH40_RS07715;anticodon=(pos:complement(1918590..1918592));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS07715;product=tRNA-Glu NZ_CP087685.1 RefSeq gene 1918680 1918755 . - . ID=gene-LPH40_RS07720;Name=LPH40_RS07720;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS07720;old_locus_tag=LPH40_07720 NZ_CP087685.1 tRNAscan-SE tRNA 1918680 1918755 . - . ID=rna-LPH40_RS07720;Parent=gene-LPH40_RS07720;anticodon=(pos:complement(1918720..1918722));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS07720;product=tRNA-Ala NZ_CP087685.1 tRNAscan-SE exon 1918680 1918755 . - . ID=exon-LPH40_RS07720-1;Parent=rna-LPH40_RS07720;anticodon=(pos:complement(1918720..1918722));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS07720;product=tRNA-Ala NZ_CP087685.1 RefSeq gene 1919794 1920453 . - . ID=gene-LPH40_RS07725;Name=LPH40_RS07725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07725;old_locus_tag=LPH40_07725 NZ_CP087685.1 Protein Homology CDS 1919794 1920453 . - 0 ID=cds-WP_038272015.1;Parent=gene-LPH40_RS07725;Dbxref=Genbank:WP_038272015.1;Name=WP_038272015.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017355957.1;locus_tag=LPH40_RS07725;product=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_038272015.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1920545 1922461 . - . ID=gene-LPH40_RS07730;Name=edd;gbkey=Gene;gene=edd;gene_biotype=protein_coding;locus_tag=LPH40_RS07730;old_locus_tag=LPH40_07730 NZ_CP087685.1 Protein Homology CDS 1920545 1922461 . - 0 ID=cds-WP_038272017.1;Parent=gene-LPH40_RS07730;Dbxref=Genbank:WP_038272017.1;Name=WP_038272017.1;Ontology_term=GO:0009255,GO:0004456;gbkey=CDS;gene=edd;go_function=phosphogluconate dehydratase activity|0004456||IEA;go_process=Entner-Doudoroff pathway through 6-phosphogluconate|0009255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085203.1;locus_tag=LPH40_RS07730;product=phosphogluconate dehydratase;protein_id=WP_038272017.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1922608 1923327 . - . ID=gene-LPH40_RS07735;Name=pgl;gbkey=Gene;gene=pgl;gene_biotype=protein_coding;locus_tag=LPH40_RS07735;old_locus_tag=LPH40_07735 NZ_CP087685.1 Protein Homology CDS 1922608 1923327 . - 0 ID=cds-WP_038272018.1;Parent=gene-LPH40_RS07735;Dbxref=Genbank:WP_038272018.1;Name=WP_038272018.1;Ontology_term=GO:0006098,GO:0017057;gbkey=CDS;gene=pgl;go_function=6-phosphogluconolactonase activity|0017057||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090237.1;locus_tag=LPH40_RS07735;product=6-phosphogluconolactonase;protein_id=WP_038272018.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1923324 1924337 . - . ID=gene-LPH40_RS07740;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=LPH40_RS07740;old_locus_tag=LPH40_07740 NZ_CP087685.1 Protein Homology CDS 1923324 1924337 . - 0 ID=cds-WP_038272019.1;Parent=gene-LPH40_RS07740;Dbxref=Genbank:WP_038272019.1;Name=WP_038272019.1;Ontology_term=GO:0005975,GO:0004340;gbkey=CDS;gene=glk;go_function=glucokinase activity|0004340||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085201.1;locus_tag=LPH40_RS07740;product=glucokinase;protein_id=WP_038272019.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1924334 1925809 . - . ID=gene-LPH40_RS07745;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=protein_coding;locus_tag=LPH40_RS07745;old_locus_tag=LPH40_07745 NZ_CP087685.1 Protein Homology CDS 1924334 1925809 . - 0 ID=cds-WP_230428273.1;Parent=gene-LPH40_RS07745;Dbxref=Genbank:WP_230428273.1;Name=WP_230428273.1;Ontology_term=GO:0006098,GO:0004345;gbkey=CDS;gene=zwf;go_function=glucose-6-phosphate dehydrogenase activity|0004345||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090238.1;locus_tag=LPH40_RS07745;product=glucose-6-phosphate dehydrogenase;protein_id=WP_230428273.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1926131 1927225 . + . ID=gene-LPH40_RS07750;Name=ugpC;gbkey=Gene;gene=ugpC;gene_biotype=protein_coding;locus_tag=LPH40_RS07750;old_locus_tag=LPH40_07750 NZ_CP087685.1 Protein Homology CDS 1926131 1927225 . + 0 ID=cds-WP_038272021.1;Parent=gene-LPH40_RS07750;Dbxref=Genbank:WP_038272021.1;Name=WP_038272021.1;Ontology_term=GO:0005524,GO:0140359;gbkey=CDS;gene=ugpC;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337631.1;locus_tag=LPH40_RS07750;product=sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;protein_id=WP_038272021.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1927376 1928236 . - . ID=gene-LPH40_RS07755;Name=LPH40_RS07755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07755;old_locus_tag=LPH40_07755 NZ_CP087685.1 Protein Homology CDS 1927376 1928236 . - 0 ID=cds-WP_230428160.1;Parent=gene-LPH40_RS07755;Dbxref=Genbank:WP_230428160.1;Name=WP_230428160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017355963.1;locus_tag=LPH40_RS07755;product=folate-binding protein;protein_id=WP_230428160.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1928594 1928695 . + . ID=gene-LPH40_RS07760;Name=LPH40_RS07760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07760;old_locus_tag=LPH40_07760 NZ_CP087685.1 Protein Homology CDS 1928594 1928695 . + 0 ID=cds-WP_230428161.1;Parent=gene-LPH40_RS07760;Dbxref=Genbank:WP_230428161.1;Name=WP_230428161.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019511.2;locus_tag=LPH40_RS07760;product=DUF1674 domain-containing protein;protein_id=WP_230428161.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1928753 1929148 . + . ID=gene-LPH40_RS07765;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;locus_tag=LPH40_RS07765;old_locus_tag=LPH40_07765 NZ_CP087685.1 Protein Homology CDS 1928753 1929148 . + 0 ID=cds-WP_081755467.1;Parent=gene-LPH40_RS07765;Dbxref=Genbank:WP_081755467.1;Name=WP_081755467.1;Ontology_term=GO:0006099,GO:0000104,GO:0045282;gbkey=CDS;gene=sdhC;go_component=plasma membrane succinate dehydrogenase complex|0045282||IEA;go_function=succinate dehydrogenase activity|0000104||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089288.1;locus_tag=LPH40_RS07765;product=succinate dehydrogenase%2C cytochrome b556 subunit;protein_id=WP_081755467.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1929145 1929528 . + . ID=gene-LPH40_RS07770;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;locus_tag=LPH40_RS07770;old_locus_tag=LPH40_07770 NZ_CP087685.1 Protein Homology CDS 1929145 1929528 . + 0 ID=cds-WP_038272022.1;Parent=gene-LPH40_RS07770;Dbxref=Genbank:WP_038272022.1;Name=WP_038272022.1;Ontology_term=GO:0006099,GO:0000104,GO:0045282;gbkey=CDS;gene=sdhD;go_component=plasma membrane succinate dehydrogenase complex|0045282||IEA;go_function=succinate dehydrogenase activity|0000104||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893590.1;locus_tag=LPH40_RS07770;product=succinate dehydrogenase%2C hydrophobic membrane anchor protein;protein_id=WP_038272022.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1929536 1931326 . + . ID=gene-LPH40_RS07775;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=LPH40_RS07775;old_locus_tag=LPH40_07775 NZ_CP087685.1 Protein Homology CDS 1929536 1931326 . + 0 ID=cds-WP_038272023.1;Parent=gene-LPH40_RS07775;Dbxref=Genbank:WP_038272023.1;Name=WP_038272023.1;Ontology_term=GO:0006099,GO:0022900,GO:0016627,GO:0050660;gbkey=CDS;gene=sdhA;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851880.1;locus_tag=LPH40_RS07775;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_038272023.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1931347 1932132 . + . ID=gene-LPH40_RS07780;Name=LPH40_RS07780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07780;old_locus_tag=LPH40_07780 NZ_CP087685.1 Protein Homology CDS 1931347 1932132 . + 0 ID=cds-WP_038272024.1;Parent=gene-LPH40_RS07780;Dbxref=Genbank:WP_038272024.1;Name=WP_038272024.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037280.1;locus_tag=LPH40_RS07780;product=succinate dehydrogenase iron-sulfur subunit;protein_id=WP_038272024.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1932253 1932501 . + . ID=gene-LPH40_RS07785;Name=LPH40_RS07785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07785;old_locus_tag=LPH40_07785 NZ_CP087685.1 Protein Homology CDS 1932253 1932501 . + 0 ID=cds-WP_038272025.1;Parent=gene-LPH40_RS07785;Dbxref=Genbank:WP_038272025.1;Name=WP_038272025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802215.1;locus_tag=LPH40_RS07785;product=succinate dehydrogenase assembly factor 2;protein_id=WP_038272025.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1932452 1932904 . + . ID=gene-LPH40_RS07790;Name=LPH40_RS07790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07790;old_locus_tag=LPH40_07790 NZ_CP087685.1 Protein Homology CDS 1932452 1932904 . + 0 ID=cds-WP_230428497.1;Parent=gene-LPH40_RS07790;Dbxref=Genbank:WP_230428497.1;Name=WP_230428497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085193.1;locus_tag=LPH40_RS07790;product=hypothetical protein;protein_id=WP_230428497.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1932929 1934170 . + . ID=gene-LPH40_RS07795;Name=LPH40_RS07795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07795;old_locus_tag=LPH40_07795 NZ_CP087685.1 Protein Homology CDS 1932929 1934170 . + 0 ID=cds-WP_038272028.1;Parent=gene-LPH40_RS07795;Dbxref=Genbank:WP_038272028.1;Name=WP_038272028.1;Ontology_term=GO:0042953,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902586.1;locus_tag=LPH40_RS07795;product=lipoprotein-releasing ABC transporter permease subunit;protein_id=WP_038272028.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1934163 1934885 . + . ID=gene-LPH40_RS07800;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=LPH40_RS07800;old_locus_tag=LPH40_07800 NZ_CP087685.1 Protein Homology CDS 1934163 1934885 . + 0 ID=cds-WP_038272030.1;Parent=gene-LPH40_RS07800;Dbxref=Genbank:WP_038272030.1;Name=WP_038272030.1;Ontology_term=GO:0042953,GO:0005524,GO:0043190;gbkey=CDS;gene=lolD;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089270.1;locus_tag=LPH40_RS07800;product=lipoprotein-releasing ABC transporter ATP-binding protein LolD;protein_id=WP_038272030.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1935467 1937866 . + . ID=gene-LPH40_RS07805;Name=LPH40_RS07805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07805;old_locus_tag=LPH40_07805 NZ_CP087685.1 Protein Homology CDS 1935467 1937866 . + 0 ID=cds-WP_230428274.1;Parent=gene-LPH40_RS07805;Dbxref=Genbank:WP_230428274.1;Name=WP_230428274.1;Ontology_term=GO:0009290,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=DNA import into cell involved in transformation|0009290||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851884.1;locus_tag=LPH40_RS07805;product=DNA internalization-related competence protein ComEC/Rec2;protein_id=WP_230428274.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1937851 1938516 . + . ID=gene-LPH40_RS07810;Name=LPH40_RS07810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07810;old_locus_tag=LPH40_07810 NZ_CP087685.1 Protein Homology CDS 1937851 1938516 . + 0 ID=cds-WP_038272035.1;Parent=gene-LPH40_RS07810;Dbxref=Genbank:WP_038272035.1;Name=WP_038272035.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085189.1;locus_tag=LPH40_RS07810;product=MotA/TolQ/ExbB proton channel family protein;protein_id=WP_038272035.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1938521 1938958 . + . ID=gene-LPH40_RS07815;Name=LPH40_RS07815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07815;old_locus_tag=LPH40_07815 NZ_CP087685.1 Protein Homology CDS 1938521 1938958 . + 0 ID=cds-WP_038272037.1;Parent=gene-LPH40_RS07815;Dbxref=Genbank:WP_038272037.1;Name=WP_038272037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237622.1;locus_tag=LPH40_RS07815;product=biopolymer transporter ExbD;protein_id=WP_038272037.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1938976 1940724 . + . ID=gene-LPH40_RS07820;Name=msbA;gbkey=Gene;gene=msbA;gene_biotype=protein_coding;locus_tag=LPH40_RS07820;old_locus_tag=LPH40_07820 NZ_CP087685.1 Protein Homology CDS 1938976 1940724 . + 0 ID=cds-WP_038272039.1;Parent=gene-LPH40_RS07820;Dbxref=Genbank:WP_038272039.1;Name=WP_038272039.1;Ontology_term=GO:0006869,GO:0005319;gbkey=CDS;gene=msbA;go_function=lipid transporter activity|0005319||IEA;go_process=lipid transport|0006869||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851886.1;locus_tag=LPH40_RS07820;product=lipid A export permease/ATP-binding protein MsbA;protein_id=WP_038272039.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1940721 1941740 . + . ID=gene-LPH40_RS07825;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=LPH40_RS07825;old_locus_tag=LPH40_07825 NZ_CP087685.1 Protein Homology CDS 1940721 1941740 . + 0 ID=cds-WP_038272041.1;Parent=gene-LPH40_RS07825;Dbxref=Genbank:WP_038272041.1;Name=WP_038272041.1;Ontology_term=GO:0009245,GO:0009029;gbkey=CDS;gene=lpxK;go_function=tetraacyldisaccharide 4'-kinase activity|0009029||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085186.1;locus_tag=LPH40_RS07825;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_038272041.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1943064 1943696 . + . ID=gene-LPH40_RS07830;Name=LPH40_RS07830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07830;old_locus_tag=LPH40_07830 NZ_CP087685.1 Protein Homology CDS 1943064 1943696 . + 0 ID=cds-WP_038272043.1;Parent=gene-LPH40_RS07830;Dbxref=Genbank:WP_038272043.1;Name=WP_038272043.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850972.1;locus_tag=LPH40_RS07830;product=ParA family protein;protein_id=WP_038272043.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1943716 1944192 . + . ID=gene-LPH40_RS07835;Name=LPH40_RS07835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07835;old_locus_tag=LPH40_07835 NZ_CP087685.1 Protein Homology CDS 1943716 1944192 . + 0 ID=cds-WP_038272079.1;Parent=gene-LPH40_RS07835;Dbxref=Genbank:WP_038272079.1;Name=WP_038272079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035432.1;locus_tag=LPH40_RS07835;product=histidine phosphatase family protein;protein_id=WP_038272079.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1944197 1944769 . + . ID=gene-LPH40_RS07840;Name=LPH40_RS07840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07840;old_locus_tag=LPH40_07840 NZ_CP087685.1 Protein Homology CDS 1944197 1944769 . + 0 ID=cds-WP_051482358.1;Parent=gene-LPH40_RS07840;Dbxref=Genbank:WP_051482358.1;Name=WP_051482358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017355481.1;locus_tag=LPH40_RS07840;product=YceI family protein;protein_id=WP_051482358.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1944766 1946718 . + . ID=gene-LPH40_RS07845;Name=LPH40_RS07845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07845;old_locus_tag=LPH40_07845 NZ_CP087685.1 Protein Homology CDS 1944766 1946718 . + 0 ID=cds-WP_038272045.1;Parent=gene-LPH40_RS07845;Dbxref=Genbank:WP_038272045.1;Name=WP_038272045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097628.1;locus_tag=LPH40_RS07845;product=phospholipase D family protein;protein_id=WP_038272045.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1947275 1947700 . + . ID=gene-LPH40_RS07850;Name=LPH40_RS07850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07850;old_locus_tag=LPH40_07850 NZ_CP087685.1 Protein Homology CDS 1947275 1947700 . + 0 ID=cds-WP_200866205.1;Parent=gene-LPH40_RS07850;Dbxref=Genbank:WP_200866205.1;Name=WP_200866205.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016246.2;locus_tag=LPH40_RS07850;product=DUF488 domain-containing protein;protein_id=WP_200866205.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1947657 1948094 . - . ID=gene-LPH40_RS07855;Name=LPH40_RS07855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07855;old_locus_tag=LPH40_07855 NZ_CP087685.1 GeneMarkS-2+ CDS 1947657 1948094 . - 0 ID=cds-WP_201745823.1;Parent=gene-LPH40_RS07855;Dbxref=Genbank:WP_201745823.1;Name=WP_201745823.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07855;product=hypothetical protein;protein_id=WP_201745823.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1948188 1948343 . - . ID=gene-LPH40_RS07860;Name=LPH40_RS07860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07860;old_locus_tag=LPH40_07860 NZ_CP087685.1 GeneMarkS-2+ CDS 1948188 1948343 . - 0 ID=cds-WP_200866207.1;Parent=gene-LPH40_RS07860;Dbxref=Genbank:WP_200866207.1;Name=WP_200866207.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07860;product=hypothetical protein;protein_id=WP_200866207.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1948606 1949091 . - . ID=gene-LPH40_RS07865;Name=LPH40_RS07865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07865;old_locus_tag=LPH40_07865 NZ_CP087685.1 Protein Homology CDS 1948606 1949091 . - 0 ID=cds-WP_038272048.1;Parent=gene-LPH40_RS07865;Dbxref=Genbank:WP_038272048.1;Name=WP_038272048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488754.1;locus_tag=LPH40_RS07865;product=asparaginase domain-containing protein;protein_id=WP_038272048.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1949165 1949764 . - . ID=gene-LPH40_RS07870;Name=wrbA;gbkey=Gene;gene=wrbA;gene_biotype=protein_coding;locus_tag=LPH40_RS07870;old_locus_tag=LPH40_07870 NZ_CP087685.1 Protein Homology CDS 1949165 1949764 . - 0 ID=cds-WP_038272050.1;Parent=gene-LPH40_RS07870;Dbxref=Genbank:WP_038272050.1;Name=WP_038272050.1;Ontology_term=GO:0003955,GO:0010181;gbkey=CDS;gene=wrbA;go_function=NAD(P)H dehydrogenase (quinone) activity|0003955||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893611.1;locus_tag=LPH40_RS07870;product=NAD(P)H:quinone oxidoreductase;protein_id=WP_038272050.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1950602 1951780 . + . ID=gene-LPH40_RS07875;Name=pncB;gbkey=Gene;gene=pncB;gene_biotype=protein_coding;locus_tag=LPH40_RS07875;old_locus_tag=LPH40_07875 NZ_CP087685.1 Protein Homology CDS 1950602 1951780 . + 0 ID=cds-WP_038272082.1;Parent=gene-LPH40_RS07875;Dbxref=Genbank:WP_038272082.1;Name=WP_038272082.1;Ontology_term=GO:0019358,GO:0004516;gbkey=CDS;gene=pncB;go_function=nicotinate phosphoribosyltransferase activity|0004516||IEA;go_process=nicotinate nucleotide salvage|0019358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003472474.1;locus_tag=LPH40_RS07875;product=nicotinate phosphoribosyltransferase;protein_id=WP_038272082.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1953048 1953626 . - . ID=gene-LPH40_RS07880;Name=LPH40_RS07880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07880;old_locus_tag=LPH40_07880 NZ_CP087685.1 Protein Homology CDS 1953048 1953626 . - 0 ID=cds-WP_038272053.1;Parent=gene-LPH40_RS07880;Dbxref=Genbank:WP_038272053.1;Name=WP_038272053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893616.1;locus_tag=LPH40_RS07880;product=phosphoesterase;protein_id=WP_038272053.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1954194 1954334 . - . ID=gene-LPH40_RS07885;Name=LPH40_RS07885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07885;old_locus_tag=LPH40_07885 NZ_CP087685.1 Protein Homology CDS 1954194 1954334 . - 0 ID=cds-WP_230428163.1;Parent=gene-LPH40_RS07885;Dbxref=Genbank:WP_230428163.1;Name=WP_230428163.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024671.2;locus_tag=LPH40_RS07885;product=DUF4065 domain-containing protein;protein_id=WP_230428163.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1955619 1956182 . - . ID=gene-LPH40_RS07890;Name=LPH40_RS07890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07890;old_locus_tag=LPH40_07890 NZ_CP087685.1 Protein Homology CDS 1955619 1956182 . - 0 ID=cds-WP_038272055.1;Parent=gene-LPH40_RS07890;Dbxref=Genbank:WP_038272055.1;Name=WP_038272055.1;Ontology_term=GO:0003725;gbkey=CDS;go_function=double-stranded RNA binding|0003725||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921907.1;locus_tag=LPH40_RS07890;product=Sua5/YciO/YrdC/YwlC family protein;protein_id=WP_038272055.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1956317 1958752 . - . ID=gene-LPH40_RS07895;Name=LPH40_RS07895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07895;old_locus_tag=LPH40_07895 NZ_CP087685.1 Protein Homology CDS 1956317 1958752 . - 0 ID=cds-WP_038272057.1;Parent=gene-LPH40_RS07895;Dbxref=Genbank:WP_038272057.1;Name=WP_038272057.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089635.1;locus_tag=LPH40_RS07895;product=DNA topoisomerase I;protein_id=WP_038272057.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1959032 1959340 . - . ID=gene-LPH40_RS07900;Name=LPH40_RS07900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07900;old_locus_tag=LPH40_07900 NZ_CP087685.1 GeneMarkS-2+ CDS 1959032 1959340 . - 0 ID=cds-WP_038272058.1;Parent=gene-LPH40_RS07900;Dbxref=Genbank:WP_038272058.1;Name=WP_038272058.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07900;product=RDD family protein;protein_id=WP_038272058.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1960161 1960634 . - . ID=gene-LPH40_RS07905;Name=LPH40_RS07905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07905;old_locus_tag=LPH40_07905 NZ_CP087685.1 Protein Homology CDS 1960161 1960634 . - 0 ID=cds-WP_038272059.1;Parent=gene-LPH40_RS07905;Dbxref=Genbank:WP_038272059.1;Name=WP_038272059.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159357.1;locus_tag=LPH40_RS07905;product=DUF494 family protein;protein_id=WP_038272059.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1960680 1961819 . - . ID=gene-LPH40_RS07910;Name=dprA;gbkey=Gene;gene=dprA;gene_biotype=protein_coding;locus_tag=LPH40_RS07910;old_locus_tag=LPH40_07910 NZ_CP087685.1 Protein Homology CDS 1960680 1961819 . - 0 ID=cds-WP_038272084.1;Parent=gene-LPH40_RS07910;Dbxref=Genbank:WP_038272084.1;Name=WP_038272084.1;Ontology_term=GO:0009294;gbkey=CDS;gene=dprA;go_process=DNA-mediated transformation|0009294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851583.1;locus_tag=LPH40_RS07910;product=DNA-processing protein DprA;protein_id=WP_038272084.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1961914 1963074 . - . ID=gene-LPH40_RS07915;Name=LPH40_RS07915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07915;old_locus_tag=LPH40_07915 NZ_CP087685.1 Protein Homology CDS 1961914 1963074 . - 0 ID=cds-WP_038272062.1;Parent=gene-LPH40_RS07915;Dbxref=Genbank:WP_038272062.1;Name=WP_038272062.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851584.1;locus_tag=LPH40_RS07915;product=LysM peptidoglycan-binding domain-containing protein;protein_id=WP_038272062.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1963213 1963725 . + . ID=gene-LPH40_RS07920;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=LPH40_RS07920;old_locus_tag=LPH40_07920 NZ_CP087685.1 Protein Homology CDS 1963213 1963725 . + 0 ID=cds-WP_038272064.1;Parent=gene-LPH40_RS07920;Dbxref=Genbank:WP_038272064.1;Name=WP_038272064.1;Ontology_term=GO:0036211,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911379.1;locus_tag=LPH40_RS07920;product=peptide deformylase;protein_id=WP_038272064.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1963831 1964754 . + . ID=gene-LPH40_RS07925;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=LPH40_RS07925;old_locus_tag=LPH40_07925 NZ_CP087685.1 Protein Homology CDS 1963831 1964754 . + 0 ID=cds-WP_038272066.1;Parent=gene-LPH40_RS07925;Dbxref=Genbank:WP_038272066.1;Name=WP_038272066.1;Ontology_term=GO:0006431,GO:0004479,GO:0005737;gbkey=CDS;gene=fmt;go_component=cytoplasm|0005737||IEA;go_function=methionyl-tRNA formyltransferase activity|0004479||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851586.1;locus_tag=LPH40_RS07925;product=methionyl-tRNA formyltransferase;protein_id=WP_038272066.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1964751 1966040 . + . ID=gene-LPH40_RS07930;Name=rsmB;gbkey=Gene;gene=rsmB;gene_biotype=protein_coding;locus_tag=LPH40_RS07930;old_locus_tag=LPH40_07930 NZ_CP087685.1 Protein Homology CDS 1964751 1966040 . + 0 ID=cds-WP_038272068.1;Parent=gene-LPH40_RS07930;Dbxref=Genbank:WP_038272068.1;Name=WP_038272068.1;Ontology_term=GO:0001510,GO:0006355,GO:0006364,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmB;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA,regulation of DNA-templated transcription|0006355||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849283.1;locus_tag=LPH40_RS07930;product=16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;protein_id=WP_038272068.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1966073 1967788 . + . ID=gene-LPH40_RS07935;Name=LPH40_RS07935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07935;old_locus_tag=LPH40_07935 NZ_CP087685.1 Protein Homology CDS 1966073 1967788 . + 0 ID=cds-WP_038272070.1;Parent=gene-LPH40_RS07935;Dbxref=Genbank:WP_038272070.1;Name=WP_038272070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091215.1;locus_tag=LPH40_RS07935;product=glycosyltransferase family 39 protein;protein_id=WP_038272070.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1968350 1969411 . - . ID=gene-LPH40_RS07940;Name=LPH40_RS07940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07940;old_locus_tag=LPH40_07940 NZ_CP087685.1 Protein Homology CDS 1968350 1969411 . - 0 ID=cds-WP_038273275.1;Parent=gene-LPH40_RS07940;Dbxref=Genbank:WP_038273275.1;Name=WP_038273275.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852652.1;locus_tag=LPH40_RS07940;product=tyrosine-type recombinase/integrase;protein_id=WP_038273275.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1969424 1969660 . - . ID=gene-LPH40_RS07945;Name=LPH40_RS07945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07945;old_locus_tag=LPH40_07945 NZ_CP087685.1 Protein Homology CDS 1969424 1969660 . - 0 ID=cds-WP_069636229.1;Parent=gene-LPH40_RS07945;Dbxref=Genbank:WP_069636229.1;Name=WP_069636229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852651.1;locus_tag=LPH40_RS07945;product=DUF4224 domain-containing protein;protein_id=WP_069636229.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1969711 1970247 . - . ID=gene-LPH40_RS07950;Name=LPH40_RS07950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07950;old_locus_tag=LPH40_07950 NZ_CP087685.1 Protein Homology CDS 1969711 1970247 . - 0 ID=cds-WP_038273354.1;Parent=gene-LPH40_RS07950;Dbxref=Genbank:WP_038273354.1;Name=WP_038273354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337723.1;locus_tag=LPH40_RS07950;product=pilin;protein_id=WP_038273354.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1970244 1971629 . - . ID=gene-LPH40_RS07955;Name=LPH40_RS07955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07955;old_locus_tag=LPH40_07955 NZ_CP087685.1 Protein Homology CDS 1970244 1971629 . - 0 ID=cds-WP_114867068.1;Parent=gene-LPH40_RS07955;Dbxref=Genbank:WP_114867068.1;Name=WP_114867068.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085030.1;locus_tag=LPH40_RS07955;product=DEAD/DEAH box helicase;protein_id=WP_114867068.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1971705 1972010 . + . ID=gene-LPH40_RS07960;Name=LPH40_RS07960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07960;old_locus_tag=LPH40_07960 NZ_CP087685.1 Protein Homology CDS 1971705 1972010 . + 0 ID=cds-WP_114867069.1;Parent=gene-LPH40_RS07960;Dbxref=Genbank:WP_114867069.1;Name=WP_114867069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851619.1;locus_tag=LPH40_RS07960;product=DUF1640 domain-containing protein;protein_id=WP_114867069.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1972012 1972284 . - . ID=gene-LPH40_RS07965;Name=LPH40_RS07965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07965;old_locus_tag=LPH40_07965 NZ_CP087685.1 Protein Homology CDS 1972012 1972284 . - 0 ID=cds-WP_114867070.1;Parent=gene-LPH40_RS07965;Dbxref=Genbank:WP_114867070.1;Name=WP_114867070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382732.1;locus_tag=LPH40_RS07965;product=VRR-NUC domain-containing protein;protein_id=WP_114867070.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1972288 1972587 . - . ID=gene-LPH40_RS07970;Name=LPH40_RS07970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07970;old_locus_tag=LPH40_07970 NZ_CP087685.1 GeneMarkS-2+ CDS 1972288 1972587 . - 0 ID=cds-WP_051482410.1;Parent=gene-LPH40_RS07970;Dbxref=Genbank:WP_051482410.1;Name=WP_051482410.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07970;product=hypothetical protein;protein_id=WP_051482410.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1972611 1972964 . - . ID=gene-LPH40_RS07975;Name=LPH40_RS07975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07975;old_locus_tag=LPH40_07975 NZ_CP087685.1 Protein Homology CDS 1972611 1972964 . - 0 ID=cds-WP_081755417.1;Parent=gene-LPH40_RS07975;Dbxref=Genbank:WP_081755417.1;Name=WP_081755417.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022444.2;locus_tag=LPH40_RS07975;product=DUF2815 family protein;protein_id=WP_081755417.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1972961 1974238 . - . ID=gene-LPH40_RS07980;Name=LPH40_RS07980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07980;old_locus_tag=LPH40_07980 NZ_CP087685.1 Protein Homology CDS 1972961 1974238 . - 0 ID=cds-WP_038270871.1;Parent=gene-LPH40_RS07980;Dbxref=Genbank:WP_038270871.1;Name=WP_038270871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894945.1;locus_tag=LPH40_RS07980;product=DUF2800 domain-containing protein;protein_id=WP_038270871.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1974235 1974465 . - . ID=gene-LPH40_RS07985;Name=LPH40_RS07985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07985;old_locus_tag=LPH40_07985 NZ_CP087685.1 GeneMarkS-2+ CDS 1974235 1974465 . - 0 ID=cds-WP_038270872.1;Parent=gene-LPH40_RS07985;Dbxref=Genbank:WP_038270872.1;Name=WP_038270872.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07985;product=hypothetical protein;protein_id=WP_038270872.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1974471 1975123 . + . ID=gene-LPH40_RS07990;Name=LPH40_RS07990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS07990;old_locus_tag=LPH40_07990;partial=true;pseudo=true;start_range=.,1974471 NZ_CP087685.1 Protein Homology CDS 1974471 1975123 . + 0 ID=cds-LPH40_RS07990;Parent=gene-LPH40_RS07990;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003156775.1;locus_tag=LPH40_RS07990;partial=true;product=sodium-independent anion transporter;pseudo=true;start_range=.,1974471;transl_table=11 NZ_CP087685.1 RefSeq gene 1975288 1975827 . + . ID=gene-LPH40_RS07995;Name=LPH40_RS07995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS07995;old_locus_tag=LPH40_07995 NZ_CP087685.1 GeneMarkS-2+ CDS 1975288 1975827 . + 0 ID=cds-WP_152536598.1;Parent=gene-LPH40_RS07995;Dbxref=Genbank:WP_152536598.1;Name=WP_152536598.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS07995;product=hypothetical protein;protein_id=WP_152536598.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1976087 1977244 . + . ID=gene-LPH40_RS08000;Name=cfa;gbkey=Gene;gene=cfa;gene_biotype=protein_coding;locus_tag=LPH40_RS08000;old_locus_tag=LPH40_08000 NZ_CP087685.1 Protein Homology CDS 1976087 1977244 . + 0 ID=cds-WP_268746644.1;Parent=gene-LPH40_RS08000;Dbxref=Genbank:WP_268746644.1;Name=WP_268746644.1;gbkey=CDS;gene=cfa;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008210866.1;locus_tag=LPH40_RS08000;product=cyclopropane fatty acyl phospholipid synthase;protein_id=WP_268746644.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 1977568 1977691 . + . ID=gene-LPH40_RS08005;Name=LPH40_RS08005;end_range=1977691,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS08005;old_locus_tag=LPH40_08005;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 1977568 1977691 . + 0 ID=cds-LPH40_RS08005;Parent=gene-LPH40_RS08005;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003700;end_range=1977691,.;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003227859.1;locus_tag=LPH40_RS08005;partial=true;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 1977875 1978417 . + . ID=gene-LPH40_RS08010;Name=LPH40_RS08010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08010;old_locus_tag=LPH40_08010 NZ_CP087685.1 GeneMarkS-2+ CDS 1977875 1978417 . + 0 ID=cds-WP_038270877.1;Parent=gene-LPH40_RS08010;Dbxref=Genbank:WP_038270877.1;Name=WP_038270877.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08010;product=hypothetical protein;protein_id=WP_038270877.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1978457 1978672 . - . ID=gene-LPH40_RS08015;Name=LPH40_RS08015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08015;old_locus_tag=LPH40_08015 NZ_CP087685.1 GeneMarkS-2+ CDS 1978457 1978672 . - 0 ID=cds-WP_230428164.1;Parent=gene-LPH40_RS08015;Dbxref=Genbank:WP_230428164.1;Name=WP_230428164.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08015;product=hypothetical protein;protein_id=WP_230428164.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1979031 1979522 . + . ID=gene-LPH40_RS08020;Name=LPH40_RS08020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08020;old_locus_tag=LPH40_08020 NZ_CP087685.1 GeneMarkS-2+ CDS 1979031 1979522 . + 0 ID=cds-WP_038270878.1;Parent=gene-LPH40_RS08020;Dbxref=Genbank:WP_038270878.1;Name=WP_038270878.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08020;product=hypothetical protein;protein_id=WP_038270878.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1979674 1979847 . - . ID=gene-LPH40_RS08025;Name=LPH40_RS08025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08025;old_locus_tag=LPH40_08025 NZ_CP087685.1 GeneMarkS-2+ CDS 1979674 1979847 . - 0 ID=cds-WP_160165157.1;Parent=gene-LPH40_RS08025;Dbxref=Genbank:WP_160165157.1;Name=WP_160165157.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08025;product=hypothetical protein;protein_id=WP_160165157.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1980107 1980382 . - . ID=gene-LPH40_RS08030;Name=LPH40_RS08030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08030;old_locus_tag=LPH40_08030 NZ_CP087685.1 Protein Homology CDS 1980107 1980382 . - 0 ID=cds-WP_051482289.1;Parent=gene-LPH40_RS08030;Dbxref=Genbank:WP_051482289.1;Name=WP_051482289.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027273.2;locus_tag=LPH40_RS08030;product=YdaS family helix-turn-helix protein;protein_id=WP_051482289.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1980480 1980803 . + . ID=gene-LPH40_RS08035;Name=LPH40_RS08035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08035;old_locus_tag=LPH40_08035 NZ_CP087685.1 GeneMarkS-2+ CDS 1980480 1980803 . + 0 ID=cds-WP_069636207.1;Parent=gene-LPH40_RS08035;Dbxref=Genbank:WP_069636207.1;Name=WP_069636207.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08035;product=hypothetical protein;protein_id=WP_069636207.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1981526 1981876 . + . ID=gene-LPH40_RS08040;Name=LPH40_RS08040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08040;old_locus_tag=LPH40_08040 NZ_CP087685.1 GeneMarkS-2+ CDS 1981526 1981876 . + 0 ID=cds-WP_152536599.1;Parent=gene-LPH40_RS08040;Dbxref=Genbank:WP_152536599.1;Name=WP_152536599.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08040;product=hypothetical protein;protein_id=WP_152536599.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1982060 1982257 . + . ID=gene-LPH40_RS08045;Name=LPH40_RS08045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08045;old_locus_tag=LPH40_08045 NZ_CP087685.1 GeneMarkS-2+ CDS 1982060 1982257 . + 0 ID=cds-WP_038270880.1;Parent=gene-LPH40_RS08045;Dbxref=Genbank:WP_038270880.1;Name=WP_038270880.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08045;product=hypothetical protein;protein_id=WP_038270880.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1982394 1982564 . + . ID=gene-LPH40_RS08050;Name=LPH40_RS08050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08050;old_locus_tag=LPH40_08050 NZ_CP087685.1 GeneMarkS-2+ CDS 1982394 1982564 . + 0 ID=cds-WP_160165158.1;Parent=gene-LPH40_RS08050;Dbxref=Genbank:WP_160165158.1;Name=WP_160165158.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08050;product=hypothetical protein;protein_id=WP_160165158.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1982767 1982985 . + . ID=gene-LPH40_RS08055;Name=LPH40_RS08055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08055;old_locus_tag=LPH40_08055 NZ_CP087685.1 Protein Homology CDS 1982767 1982985 . + 0 ID=cds-WP_038270881.1;Parent=gene-LPH40_RS08055;Dbxref=Genbank:WP_038270881.1;Name=WP_038270881.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017717.2;locus_tag=LPH40_RS08055;product=AlpA family phage regulatory protein;protein_id=WP_038270881.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1985413 1986051 . + . ID=gene-LPH40_RS08060;Name=LPH40_RS08060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08060;old_locus_tag=LPH40_08060 NZ_CP087685.1 Protein Homology CDS 1985413 1986051 . + 0 ID=cds-WP_038271002.1;Parent=gene-LPH40_RS08060;Dbxref=Genbank:WP_038271002.1;Name=WP_038271002.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490472.1;locus_tag=LPH40_RS08060;product=DUF4375 domain-containing protein;protein_id=WP_038271002.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1986960 1987253 . - . ID=gene-LPH40_RS08065;Name=LPH40_RS08065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08065;old_locus_tag=LPH40_08065 NZ_CP087685.1 Protein Homology CDS 1986960 1987253 . - 0 ID=cds-WP_038270884.1;Parent=gene-LPH40_RS08065;Dbxref=Genbank:WP_038270884.1;Name=WP_038270884.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893619.1;locus_tag=LPH40_RS08065;product=DUF2782 domain-containing protein;protein_id=WP_038270884.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1987338 1990103 . + . ID=gene-LPH40_RS08070;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=LPH40_RS08070;old_locus_tag=LPH40_08070 NZ_CP087685.1 Protein Homology CDS 1987338 1990103 . + 0 ID=cds-WP_038271003.1;Parent=gene-LPH40_RS08070;Dbxref=Genbank:WP_038271003.1;Name=WP_038271003.1;Ontology_term=GO:0006261,GO:0003676,GO:0003677,GO:0003887,GO:0008408;gbkey=CDS;gene=polA;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA-templated DNA replication|0006261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159421.1;locus_tag=LPH40_RS08070;product=DNA polymerase I;protein_id=WP_038271003.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1991258 1991971 . + . ID=gene-LPH40_RS08075;Name=LPH40_RS08075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08075;old_locus_tag=LPH40_08075 NZ_CP087685.1 Protein Homology CDS 1991258 1991971 . + 0 ID=cds-WP_038270886.1;Parent=gene-LPH40_RS08075;Dbxref=Genbank:WP_038270886.1;Name=WP_038270886.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085675.1;locus_tag=LPH40_RS08075;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_038270886.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1992169 1993293 . + . ID=gene-LPH40_RS08080;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;locus_tag=LPH40_RS08080;old_locus_tag=LPH40_08080 NZ_CP087685.1 Protein Homology CDS 1992169 1993293 . + 0 ID=cds-WP_038271004.1;Parent=gene-LPH40_RS08080;Dbxref=Genbank:WP_038271004.1;Name=WP_038271004.1;Ontology_term=GO:0009220,GO:0004088,GO:0005951;gbkey=CDS;gene=carA;go_component=carbamoyl-phosphate synthase complex|0005951||IEA;go_function=carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|0004088||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893623.1;locus_tag=LPH40_RS08080;product=glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit;protein_id=WP_038271004.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1993727 1996969 . + . ID=gene-LPH40_RS08085;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=LPH40_RS08085;old_locus_tag=LPH40_08085 NZ_CP087685.1 Protein Homology CDS 1993727 1996969 . + 0 ID=cds-WP_038270888.1;Parent=gene-LPH40_RS08085;Dbxref=Genbank:WP_038270888.1;Name=WP_038270888.1;Ontology_term=GO:0006807,GO:0005524,GO:0046872;gbkey=CDS;gene=carB;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085673.1;locus_tag=LPH40_RS08085;product=carbamoyl-phosphate synthase large subunit;protein_id=WP_038270888.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1996966 1997442 . + . ID=gene-LPH40_RS08090;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=LPH40_RS08090;old_locus_tag=LPH40_08090 NZ_CP087685.1 Protein Homology CDS 1996966 1997442 . + 0 ID=cds-WP_081755418.1;Parent=gene-LPH40_RS08090;Dbxref=Genbank:WP_081755418.1;Name=WP_081755418.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=greA;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085672.1;locus_tag=LPH40_RS08090;product=transcription elongation factor GreA;protein_id=WP_081755418.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1997450 1998370 . + . ID=gene-LPH40_RS08095;Name=LPH40_RS08095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08095;old_locus_tag=LPH40_08095 NZ_CP087685.1 Protein Homology CDS 1997450 1998370 . + 0 ID=cds-WP_038270892.1;Parent=gene-LPH40_RS08095;Dbxref=Genbank:WP_038270892.1;Name=WP_038270892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806444.1;locus_tag=LPH40_RS08095;product=phosphoglycerate mutase;protein_id=WP_038270892.1;transl_table=11 NZ_CP087685.1 RefSeq gene 1998373 2000139 . + . ID=gene-LPH40_RS08100;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=LPH40_RS08100;old_locus_tag=LPH40_08100 NZ_CP087685.1 Protein Homology CDS 1998373 2000139 . + 0 ID=cds-WP_114867209.1;Parent=gene-LPH40_RS08100;Dbxref=Genbank:WP_114867209.1;Name=WP_114867209.1;Ontology_term=GO:0006310,GO:0008297;gbkey=CDS;gene=recJ;go_function=single-stranded DNA exodeoxyribonuclease activity|0008297||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337671.1;locus_tag=LPH40_RS08100;product=single-stranded-DNA-specific exonuclease RecJ;protein_id=WP_114867209.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2000751 2001876 . + . ID=gene-LPH40_RS08105;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=LPH40_RS08105;old_locus_tag=LPH40_08105 NZ_CP087685.1 Protein Homology CDS 2000751 2000825 . + 0 ID=cds-WP_114867074.1;Parent=gene-LPH40_RS08105;Dbxref=Genbank:WP_114867074.1;Name=WP_114867074.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0003747;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014037064.1;locus_tag=LPH40_RS08105;product=peptide chain release factor 2;protein_id=WP_114867074.1;transl_table=11 NZ_CP087685.1 Protein Homology CDS 2000827 2001876 . + 0 ID=cds-WP_114867074.1;Parent=gene-LPH40_RS08105;Dbxref=Genbank:WP_114867074.1;Name=WP_114867074.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0003747;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014037064.1;locus_tag=LPH40_RS08105;product=peptide chain release factor 2;protein_id=WP_114867074.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2002062 2003582 . + . ID=gene-LPH40_RS08110;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=LPH40_RS08110;old_locus_tag=LPH40_08110 NZ_CP087685.1 Protein Homology CDS 2002062 2003582 . + 0 ID=cds-WP_038270894.1;Parent=gene-LPH40_RS08110;Dbxref=Genbank:WP_038270894.1;Name=WP_038270894.1;Ontology_term=GO:0006430,GO:0004824,GO:0005737;gbkey=CDS;gene=lysS;go_component=cytoplasm|0005737||IEA;go_function=lysine-tRNA ligase activity|0004824||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085668.1;locus_tag=LPH40_RS08110;product=lysine--tRNA ligase;protein_id=WP_038270894.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2003726 2004868 . + . ID=gene-LPH40_RS08115;Name=LPH40_RS08115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08115;old_locus_tag=LPH40_08115 NZ_CP087685.1 Protein Homology CDS 2003726 2004868 . + 0 ID=cds-WP_051482298.1;Parent=gene-LPH40_RS08115;Dbxref=Genbank:WP_051482298.1;Name=WP_051482298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085667.1;locus_tag=LPH40_RS08115;product=two-component system response regulator;protein_id=WP_051482298.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2004852 2007008 . + . ID=gene-LPH40_RS08120;Name=LPH40_RS08120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08120;old_locus_tag=LPH40_08120 NZ_CP087685.1 Protein Homology CDS 2004852 2007008 . + 0 ID=cds-WP_038270895.1;Parent=gene-LPH40_RS08120;Dbxref=Genbank:WP_038270895.1;Name=WP_038270895.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237699.1;locus_tag=LPH40_RS08120;product=response regulator;protein_id=WP_038270895.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2007045 2007908 . - . ID=gene-LPH40_RS08125;Name=LPH40_RS08125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08125;old_locus_tag=LPH40_08125 NZ_CP087685.1 Protein Homology CDS 2007045 2007908 . - 0 ID=cds-WP_038270896.1;Parent=gene-LPH40_RS08125;Dbxref=Genbank:WP_038270896.1;Name=WP_038270896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850991.1;locus_tag=LPH40_RS08125;product=crotonase/enoyl-CoA hydratase family protein;protein_id=WP_038270896.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2008383 2010986 . + . ID=gene-LPH40_RS08130;Name=LPH40_RS08130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08130;old_locus_tag=LPH40_08130 NZ_CP087685.1 Protein Homology CDS 2008383 2010986 . + 0 ID=cds-WP_038270898.1;Parent=gene-LPH40_RS08130;Dbxref=Genbank:WP_038270898.1;Name=WP_038270898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085664.1;locus_tag=LPH40_RS08130;product=bifunctional aspartate kinase/diaminopimelate decarboxylase;protein_id=WP_038270898.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2011077 2012438 . + . ID=gene-LPH40_RS08135;Name=murL;gbkey=Gene;gene=murL;gene_biotype=protein_coding;locus_tag=LPH40_RS08135;old_locus_tag=LPH40_08135 NZ_CP087685.1 Protein Homology CDS 2011077 2012438 . + 0 ID=cds-WP_038270899.1;Parent=gene-LPH40_RS08135;Dbxref=Genbank:WP_038270899.1;Name=WP_038270899.1;Ontology_term=GO:0009252,GO:0016855;gbkey=CDS;gene=murL;go_function=racemase and epimerase activity%2C acting on amino acids and derivatives|0016855||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003470437.1;locus_tag=LPH40_RS08135;product=UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase;protein_id=WP_038270899.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2012419 2013822 . + . ID=gene-LPH40_RS08140;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=LPH40_RS08140;old_locus_tag=LPH40_08140 NZ_CP087685.1 Protein Homology CDS 2012419 2013822 . + 0 ID=cds-WP_038270900.1;Parent=gene-LPH40_RS08140;Dbxref=Genbank:WP_038270900.1;Name=WP_038270900.1;Ontology_term=GO:0009252,GO:0008764;gbkey=CDS;gene=murD;go_function=UDP-N-acetylmuramoylalanine-D-glutamate ligase activity|0008764||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085662.1;locus_tag=LPH40_RS08140;product=UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase;protein_id=WP_038270900.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2014045 2014287 . - . ID=gene-LPH40_RS08145;Name=LPH40_RS08145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08145;old_locus_tag=LPH40_08145 NZ_CP087685.1 GeneMarkS-2+ CDS 2014045 2014287 . - 0 ID=cds-WP_160199349.1;Parent=gene-LPH40_RS08145;Dbxref=Genbank:WP_160199349.1;Name=WP_160199349.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08145;product=hypothetical protein;protein_id=WP_160199349.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2014335 2014460 . + . ID=gene-LPH40_RS12020;Name=LPH40_RS12020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS12020 NZ_CP087685.1 GeneMarkS-2+ CDS 2014335 2014460 . + 0 ID=cds-WP_267903171.1;Parent=gene-LPH40_RS12020;Dbxref=Genbank:WP_267903171.1;Name=WP_267903171.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS12020;product=hypothetical protein;protein_id=WP_267903171.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2014494 2014637 . + . ID=gene-LPH40_RS08150;Name=LPH40_RS08150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08150;old_locus_tag=LPH40_08150 NZ_CP087685.1 GeneMarkS-2+ CDS 2014494 2014637 . + 0 ID=cds-WP_160165159.1;Parent=gene-LPH40_RS08150;Dbxref=Genbank:WP_160165159.1;Name=WP_160165159.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08150;product=hypothetical protein;protein_id=WP_160165159.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2016377 2016461 . - . ID=gene-LPH40_RS08155;Name=LPH40_RS08155;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS08155;old_locus_tag=LPH40_08155 NZ_CP087685.1 tRNAscan-SE tRNA 2016377 2016461 . - . ID=rna-LPH40_RS08155;Parent=gene-LPH40_RS08155;anticodon=(pos:complement(2016425..2016427));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08155;product=tRNA-Leu NZ_CP087685.1 tRNAscan-SE exon 2016377 2016461 . - . ID=exon-LPH40_RS08155-1;Parent=rna-LPH40_RS08155;anticodon=(pos:complement(2016425..2016427));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08155;product=tRNA-Leu NZ_CP087685.1 RefSeq gene 2017153 2018112 . + . ID=gene-LPH40_RS08160;Name=LPH40_RS08160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08160;old_locus_tag=LPH40_08160 NZ_CP087685.1 Protein Homology CDS 2017153 2018112 . + 0 ID=cds-WP_038270902.1;Parent=gene-LPH40_RS08160;Dbxref=Genbank:WP_038270902.1;Name=WP_038270902.1;Ontology_term=GO:0008413;gbkey=CDS;go_function=8-oxo-7%2C8-dihydroguanosine triphosphate pyrophosphatase activity|0008413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850994.1;locus_tag=LPH40_RS08160;product=Nudix family hydrolase;protein_id=WP_038270902.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2018125 2018394 . + . ID=gene-LPH40_RS08165;Name=LPH40_RS08165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08165;old_locus_tag=LPH40_08165 NZ_CP087685.1 GeneMarkS-2+ CDS 2018125 2018394 . + 0 ID=cds-WP_038270903.1;Parent=gene-LPH40_RS08165;Dbxref=Genbank:WP_038270903.1;Name=WP_038270903.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08165;product=hypothetical protein;protein_id=WP_038270903.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2018746 2019573 . - . ID=gene-LPH40_RS08170;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=LPH40_RS08170;old_locus_tag=LPH40_08170 NZ_CP087685.1 Protein Homology CDS 2018746 2019573 . - 0 ID=cds-WP_038270904.1;Parent=gene-LPH40_RS08170;Dbxref=Genbank:WP_038270904.1;Name=WP_038270904.1;Ontology_term=GO:0009086,GO:0004489;gbkey=CDS;gene=metF;go_function=methylenetetrahydrofolate reductase (NAD(P)H) activity|0004489||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850995.1;locus_tag=LPH40_RS08170;product=methylenetetrahydrofolate reductase [NAD(P)H];protein_id=WP_038270904.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2020740 2021474 . - . ID=gene-LPH40_RS08175;Name=LPH40_RS08175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08175;old_locus_tag=LPH40_08175 NZ_CP087685.1 Protein Homology CDS 2020740 2021474 . - 0 ID=cds-WP_038270905.1;Parent=gene-LPH40_RS08175;Dbxref=Genbank:WP_038270905.1;Name=WP_038270905.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893640.1;locus_tag=LPH40_RS08175;product=SIMPL domain-containing protein;protein_id=WP_038270905.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2021592 2022161 . + . ID=gene-LPH40_RS08180;Name=LPH40_RS08180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08180;old_locus_tag=LPH40_08180 NZ_CP087685.1 Protein Homology CDS 2021592 2022161 . + 0 ID=cds-WP_038271007.1;Parent=gene-LPH40_RS08180;Dbxref=Genbank:WP_038271007.1;Name=WP_038271007.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017915486.1;locus_tag=LPH40_RS08180;product=Maf-like protein;protein_id=WP_038271007.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2022162 2023658 . + . ID=gene-LPH40_RS08185;Name=rng;gbkey=Gene;gene=rng;gene_biotype=protein_coding;locus_tag=LPH40_RS08185;old_locus_tag=LPH40_08185 NZ_CP087685.1 Protein Homology CDS 2022162 2023658 . + 0 ID=cds-WP_038270906.1;Parent=gene-LPH40_RS08185;Dbxref=Genbank:WP_038270906.1;Name=WP_038270906.1;Ontology_term=GO:0006396,GO:0003723,GO:0004540;gbkey=CDS;gene=rng;go_function=RNA binding|0003723||IEA,ribonuclease activity|0004540||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802933.1;locus_tag=LPH40_RS08185;product=ribonuclease G;protein_id=WP_038270906.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2023814 2027614 . + . ID=gene-LPH40_RS08190;Name=LPH40_RS08190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08190;old_locus_tag=LPH40_08190 NZ_CP087685.1 Protein Homology CDS 2023814 2027614 . + 0 ID=cds-WP_230428165.1;Parent=gene-LPH40_RS08190;Dbxref=Genbank:WP_230428165.1;Name=WP_230428165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607624.1;locus_tag=LPH40_RS08190;product=YhdP family protein;protein_id=WP_230428165.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2027748 2029205 . + . ID=gene-LPH40_RS08195;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=LPH40_RS08195;old_locus_tag=LPH40_08195 NZ_CP087685.1 Protein Homology CDS 2027748 2029205 . + 0 ID=cds-WP_038270908.1;Parent=gene-LPH40_RS08195;Dbxref=Genbank:WP_038270908.1;Name=WP_038270908.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=tldD;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972594.1;locus_tag=LPH40_RS08195;product=metalloprotease TldD;protein_id=WP_038270908.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2029712 2030281 . - . ID=gene-LPH40_RS08200;Name=LPH40_RS08200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08200;old_locus_tag=LPH40_08200 NZ_CP087685.1 Protein Homology CDS 2029712 2030281 . - 0 ID=cds-WP_051482299.1;Parent=gene-LPH40_RS08200;Dbxref=Genbank:WP_051482299.1;Name=WP_051482299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852531.1;locus_tag=LPH40_RS08200;product=ribosome-associated protein;protein_id=WP_051482299.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2030341 2031708 . + . ID=gene-LPH40_RS08205;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;locus_tag=LPH40_RS08205;old_locus_tag=LPH40_08205 NZ_CP087685.1 Protein Homology CDS 2030341 2031708 . + 0 ID=cds-WP_038270909.1;Parent=gene-LPH40_RS08205;Dbxref=Genbank:WP_038270909.1;Name=WP_038270909.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=pmbA;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090050.1;locus_tag=LPH40_RS08205;product=metalloprotease PmbA;protein_id=WP_038270909.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2031776 2032510 . + . ID=gene-LPH40_RS12025;Name=LPH40_RS12025;end_range=2032510,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS12025;partial=true;pseudo=true;start_range=.,2031776 NZ_CP087685.1 Protein Homology CDS 2031776 2032510 . + 0 ID=cds-LPH40_RS12025;Parent=gene-LPH40_RS12025;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2032510,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003092331.1;locus_tag=LPH40_RS12025;partial=true;product=PDDEXK nuclease domain-containing protein;pseudo=true;start_range=.,2031776;transl_table=11 NZ_CP087685.1 RefSeq gene 2032699 2032784 . + . ID=gene-LPH40_RS08220;Name=LPH40_RS08220;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS08220;old_locus_tag=LPH40_08220 NZ_CP087685.1 tRNAscan-SE tRNA 2032699 2032784 . + . ID=rna-LPH40_RS08220;Parent=gene-LPH40_RS08220;anticodon=(pos:2032731..2032733);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08220;product=tRNA-Ser NZ_CP087685.1 tRNAscan-SE exon 2032699 2032784 . + . ID=exon-LPH40_RS08220-1;Parent=rna-LPH40_RS08220;anticodon=(pos:2032731..2032733);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08220;product=tRNA-Ser NZ_CP087685.1 RefSeq gene 2032850 2033317 . - . ID=gene-LPH40_RS08225;Name=LPH40_RS08225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08225;old_locus_tag=LPH40_08225 NZ_CP087685.1 Protein Homology CDS 2032850 2033317 . - 0 ID=cds-WP_038270910.1;Parent=gene-LPH40_RS08225;Dbxref=Genbank:WP_038270910.1;Name=WP_038270910.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015824.2;locus_tag=LPH40_RS08225;product=YfbU family protein;protein_id=WP_038270910.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2034109 2034519 . - . ID=gene-LPH40_RS08230;Name=LPH40_RS08230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08230;old_locus_tag=LPH40_08230 NZ_CP087685.1 Protein Homology CDS 2034109 2034519 . - 0 ID=cds-WP_201745835.1;Parent=gene-LPH40_RS08230;Dbxref=Genbank:WP_201745835.1;Name=WP_201745835.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015925.2;locus_tag=LPH40_RS08230;product=putative quinol monooxygenase;protein_id=WP_201745835.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2034839 2035753 . - . ID=gene-LPH40_RS08235;Name=LPH40_RS08235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08235;old_locus_tag=LPH40_08235 NZ_CP087685.1 Protein Homology CDS 2034839 2035753 . - 0 ID=cds-WP_038271010.1;Parent=gene-LPH40_RS08235;Dbxref=Genbank:WP_038271010.1;Name=WP_038271010.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017916574.1;locus_tag=LPH40_RS08235;product=LysR family transcriptional regulator;protein_id=WP_038271010.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2035932 2036501 . + . ID=gene-LPH40_RS08240;Name=LPH40_RS08240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08240;old_locus_tag=LPH40_08240 NZ_CP087685.1 Protein Homology CDS 2035932 2036501 . + 0 ID=cds-WP_038270913.1;Parent=gene-LPH40_RS08240;Dbxref=Genbank:WP_038270913.1;Name=WP_038270913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852528.1;locus_tag=LPH40_RS08240;product=flavodoxin family protein;protein_id=WP_038270913.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2036539 2036838 . + . ID=gene-LPH40_RS08245;Name=LPH40_RS08245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08245;old_locus_tag=LPH40_08245 NZ_CP087685.1 Protein Homology CDS 2036539 2036838 . + 0 ID=cds-WP_038270915.1;Parent=gene-LPH40_RS08245;Dbxref=Genbank:WP_038270915.1;Name=WP_038270915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852527.1;locus_tag=LPH40_RS08245;product=superoxide dismutase;protein_id=WP_038270915.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2036927 2037985 . + . ID=gene-LPH40_RS08250;Name=LPH40_RS08250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08250;old_locus_tag=LPH40_08250 NZ_CP087685.1 Protein Homology CDS 2036927 2037985 . + 0 ID=cds-WP_038270917.1;Parent=gene-LPH40_RS08250;Dbxref=Genbank:WP_038270917.1;Name=WP_038270917.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852526.1;locus_tag=LPH40_RS08250;product=NAD(P)-dependent alcohol dehydrogenase;protein_id=WP_038270917.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2037990 2038679 . + . ID=gene-LPH40_RS08255;Name=LPH40_RS08255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08255;old_locus_tag=LPH40_08255 NZ_CP087685.1 Protein Homology CDS 2037990 2038679 . + 0 ID=cds-WP_038270918.1;Parent=gene-LPH40_RS08255;Dbxref=Genbank:WP_038270918.1;Name=WP_038270918.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893654.1;locus_tag=LPH40_RS08255;product=type 1 glutamine amidotransferase domain-containing protein;protein_id=WP_038270918.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2039535 2039738 . + . ID=gene-LPH40_RS08260;Name=LPH40_RS08260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08260;old_locus_tag=LPH40_08260 NZ_CP087685.1 GeneMarkS-2+ CDS 2039535 2039738 . + 0 ID=cds-WP_051482293.1;Parent=gene-LPH40_RS08260;Dbxref=Genbank:WP_051482293.1;Name=WP_051482293.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08260;product=hypothetical protein;protein_id=WP_051482293.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2039806 2040789 . + . ID=gene-LPH40_RS08265;Name=LPH40_RS08265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08265;old_locus_tag=LPH40_08265 NZ_CP087685.1 Protein Homology CDS 2039806 2040789 . + 0 ID=cds-WP_038270920.1;Parent=gene-LPH40_RS08265;Dbxref=Genbank:WP_038270920.1;Name=WP_038270920.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007508381.1;locus_tag=LPH40_RS08265;product=aldo/keto reductase;protein_id=WP_038270920.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2041011 2041643 . + . ID=gene-LPH40_RS08270;Name=LPH40_RS08270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08270;old_locus_tag=LPH40_08270 NZ_CP087685.1 Protein Homology CDS 2041011 2041643 . + 0 ID=cds-WP_200866193.1;Parent=gene-LPH40_RS08270;Dbxref=Genbank:WP_200866193.1;Name=WP_200866193.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: protein motif:HMM:NF016777.2;locus_tag=LPH40_RS08270;product=amidohydrolase family protein;protein_id=WP_200866193.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2041985 2042506 . + . ID=gene-LPH40_RS08275;Name=LPH40_RS08275;end_range=2042506,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS08275;old_locus_tag=LPH40_08275;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 2041985 2042506 . + 0 ID=cds-LPH40_RS08275;Parent=gene-LPH40_RS08275;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003700;end_range=2042506,.;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011657241.1;locus_tag=LPH40_RS08275;partial=true;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2043599 2044966 . - . ID=gene-LPH40_RS08280;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=LPH40_RS08280;old_locus_tag=LPH40_08280 NZ_CP087685.1 Protein Homology CDS 2043599 2044966 . - 0 ID=cds-WP_038271011.1;Parent=gene-LPH40_RS08280;Dbxref=Genbank:WP_038271011.1;Name=WP_038271011.1;Ontology_term=GO:0009103,GO:0009252,GO:0003977,GO:0019134,GO:0005737;gbkey=CDS;gene=glmU;go_component=cytoplasm|0005737||IEA;go_function=UDP-N-acetylglucosamine diphosphorylase activity|0003977||IEA,glucosamine-1-phosphate N-acetyltransferase activity|0019134||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407581.1;locus_tag=LPH40_RS08280;product=bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;protein_id=WP_038271011.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2045329 2045904 . - . ID=gene-LPH40_RS08285;Name=LPH40_RS08285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08285;old_locus_tag=LPH40_08285 NZ_CP087685.1 Protein Homology CDS 2045329 2045904 . - 0 ID=cds-WP_038270923.1;Parent=gene-LPH40_RS08285;Dbxref=Genbank:WP_038270923.1;Name=WP_038270923.1;Ontology_term=GO:0046417;gbkey=CDS;go_process=chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852523.1;locus_tag=LPH40_RS08285;product=chorismate mutase;protein_id=WP_038270923.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2046171 2046593 . - . ID=gene-LPH40_RS08290;Name=LPH40_RS08290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08290;old_locus_tag=LPH40_08290 NZ_CP087685.1 Protein Homology CDS 2046171 2046593 . - 0 ID=cds-WP_038270925.1;Parent=gene-LPH40_RS08290;Dbxref=Genbank:WP_038270925.1;Name=WP_038270925.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407577.1;locus_tag=LPH40_RS08290;product=F0F1 ATP synthase subunit epsilon;protein_id=WP_038270925.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2046700 2048100 . - . ID=gene-LPH40_RS08295;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=LPH40_RS08295;old_locus_tag=LPH40_08295 NZ_CP087685.1 Protein Homology CDS 2046700 2048100 . - 0 ID=cds-WP_038270927.1;Parent=gene-LPH40_RS08295;Dbxref=Genbank:WP_038270927.1;Name=WP_038270927.1;Ontology_term=GO:0015986,GO:0046933,GO:0000275,GO:0045261,GO:0045262;gbkey=CDS;gene=atpD;go_component=mitochondrial proton-transporting ATP synthase complex%2C catalytic sector F(1)|0000275||IEA,proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA,plasma membrane proton-transporting ATP synthase complex%2C catalytic core F(1)|0045262||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090068.1;locus_tag=LPH40_RS08295;product=F0F1 ATP synthase subunit beta;protein_id=WP_038270927.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2048180 2049043 . - . ID=gene-LPH40_RS08300;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;locus_tag=LPH40_RS08300;old_locus_tag=LPH40_08300 NZ_CP087685.1 Protein Homology CDS 2048180 2049043 . - 0 ID=cds-WP_038270929.1;Parent=gene-LPH40_RS08300;Dbxref=Genbank:WP_038270929.1;Name=WP_038270929.1;Ontology_term=GO:0015986,GO:0046933,GO:0045261;gbkey=CDS;gene=atpG;go_component=proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371995.1;locus_tag=LPH40_RS08300;product=F0F1 ATP synthase subunit gamma;protein_id=WP_038270929.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2049135 2050682 . - . ID=gene-LPH40_RS08305;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=LPH40_RS08305;old_locus_tag=LPH40_08305 NZ_CP087685.1 Protein Homology CDS 2049135 2050682 . - 0 ID=cds-WP_038270931.1;Parent=gene-LPH40_RS08305;Dbxref=Genbank:WP_038270931.1;Name=WP_038270931.1;Ontology_term=GO:0015986,GO:0046933,GO:0000275,GO:0045261,GO:0045262;gbkey=CDS;gene=atpA;go_component=mitochondrial proton-transporting ATP synthase complex%2C catalytic sector F(1)|0000275||IEA,proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA,plasma membrane proton-transporting ATP synthase complex%2C catalytic core F(1)|0045262||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161761.1;locus_tag=LPH40_RS08305;product=F0F1 ATP synthase subunit alpha;protein_id=WP_038270931.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2050730 2051257 . - . ID=gene-LPH40_RS08310;Name=LPH40_RS08310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08310;old_locus_tag=LPH40_08310 NZ_CP087685.1 Protein Homology CDS 2050730 2051257 . - 0 ID=cds-WP_038270933.1;Parent=gene-LPH40_RS08310;Dbxref=Genbank:WP_038270933.1;Name=WP_038270933.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304550.1;locus_tag=LPH40_RS08310;product=F0F1 ATP synthase subunit delta;protein_id=WP_038270933.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2051261 2051731 . - . ID=gene-LPH40_RS08315;Name=LPH40_RS08315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08315;old_locus_tag=LPH40_08315 NZ_CP087685.1 Protein Homology CDS 2051261 2051731 . - 0 ID=cds-WP_038270934.1;Parent=gene-LPH40_RS08315;Dbxref=Genbank:WP_038270934.1;Name=WP_038270934.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901014.1;locus_tag=LPH40_RS08315;product=F0F1 ATP synthase subunit B;protein_id=WP_038270934.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2051855 2052160 . - . ID=gene-LPH40_RS08320;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;locus_tag=LPH40_RS08320;old_locus_tag=LPH40_08320 NZ_CP087685.1 Protein Homology CDS 2051855 2052160 . - 0 ID=cds-WP_038270935.1;Parent=gene-LPH40_RS08320;Dbxref=Genbank:WP_038270935.1;Name=WP_038270935.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpE;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372004.1;locus_tag=LPH40_RS08320;product=F0F1 ATP synthase subunit C;protein_id=WP_038270935.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2052222 2053019 . - . ID=gene-LPH40_RS08325;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;locus_tag=LPH40_RS08325;old_locus_tag=LPH40_08325 NZ_CP087685.1 Protein Homology CDS 2052222 2053019 . - 0 ID=cds-WP_038270936.1;Parent=gene-LPH40_RS08325;Dbxref=Genbank:WP_038270936.1;Name=WP_038270936.1;Ontology_term=GO:0015986,GO:0015078,GO:0045263;gbkey=CDS;gene=atpB;go_component=proton-transporting ATP synthase complex%2C coupling factor F(o)|0045263||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814108.1;locus_tag=LPH40_RS08325;product=F0F1 ATP synthase subunit A;protein_id=WP_038270936.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2053048 2053419 . - . ID=gene-LPH40_RS08330;Name=LPH40_RS08330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08330;old_locus_tag=LPH40_08330 NZ_CP087685.1 Protein Homology CDS 2053048 2053419 . - 0 ID=cds-WP_038270937.1;Parent=gene-LPH40_RS08330;Dbxref=Genbank:WP_038270937.1;Name=WP_038270937.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893667.1;locus_tag=LPH40_RS08330;product=hypothetical protein;protein_id=WP_038270937.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2054482 2054793 . + . ID=gene-LPH40_RS08335;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=LPH40_RS08335;old_locus_tag=LPH40_08335 NZ_CP087685.1 Protein Homology CDS 2054482 2054793 . + 0 ID=cds-WP_038270938.1;Parent=gene-LPH40_RS08335;Dbxref=Genbank:WP_038270938.1;Name=WP_038270938.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsJ;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160477.1;locus_tag=LPH40_RS08335;product=30S ribosomal protein S10;protein_id=WP_038270938.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2054805 2055452 . + . ID=gene-LPH40_RS08340;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=LPH40_RS08340;old_locus_tag=LPH40_08340 NZ_CP087685.1 Protein Homology CDS 2054805 2055452 . + 0 ID=cds-WP_038270939.1;Parent=gene-LPH40_RS08340;Dbxref=Genbank:WP_038270939.1;Name=WP_038270939.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337684.1;locus_tag=LPH40_RS08340;product=50S ribosomal protein L3;protein_id=WP_038270939.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2055464 2056069 . + . ID=gene-LPH40_RS08345;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=LPH40_RS08345;old_locus_tag=LPH40_08345 NZ_CP087685.1 Protein Homology CDS 2055464 2056069 . + 0 ID=cds-WP_038270940.1;Parent=gene-LPH40_RS08345;Dbxref=Genbank:WP_038270940.1;Name=WP_038270940.1;Ontology_term=GO:0006412,GO:0003735,GO:0022625;gbkey=CDS;gene=rplD;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371054.1;locus_tag=LPH40_RS08345;product=50S ribosomal protein L4;protein_id=WP_038270940.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2056066 2056368 . + . ID=gene-LPH40_RS08350;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=LPH40_RS08350;old_locus_tag=LPH40_08350 NZ_CP087685.1 Protein Homology CDS 2056066 2056368 . + 0 ID=cds-WP_081755424.1;Parent=gene-LPH40_RS08350;Dbxref=Genbank:WP_081755424.1;Name=WP_081755424.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplW;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090096.1;locus_tag=LPH40_RS08350;product=50S ribosomal protein L23;protein_id=WP_081755424.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2056379 2057206 . + . ID=gene-LPH40_RS08355;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=LPH40_RS08355;old_locus_tag=LPH40_08355 NZ_CP087685.1 Protein Homology CDS 2056379 2057206 . + 0 ID=cds-WP_038270942.1;Parent=gene-LPH40_RS08355;Dbxref=Genbank:WP_038270942.1;Name=WP_038270942.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplB;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009607340.1;locus_tag=LPH40_RS08355;product=50S ribosomal protein L2;protein_id=WP_038270942.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2057213 2057482 . + . ID=gene-LPH40_RS08360;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=LPH40_RS08360;old_locus_tag=LPH40_08360 NZ_CP087685.1 Protein Homology CDS 2057213 2057482 . + 0 ID=cds-WP_038270943.1;Parent=gene-LPH40_RS08360;Dbxref=Genbank:WP_038270943.1;Name=WP_038270943.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsS;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086525.1;locus_tag=LPH40_RS08360;product=30S ribosomal protein S19;protein_id=WP_038270943.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2057495 2057830 . + . ID=gene-LPH40_RS08365;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=LPH40_RS08365;old_locus_tag=LPH40_08365 NZ_CP087685.1 Protein Homology CDS 2057495 2057830 . + 0 ID=cds-WP_038270944.1;Parent=gene-LPH40_RS08365;Dbxref=Genbank:WP_038270944.1;Name=WP_038270944.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplV;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486710.1;locus_tag=LPH40_RS08365;product=50S ribosomal protein L22;protein_id=WP_038270944.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2057849 2058568 . + . ID=gene-LPH40_RS08370;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=LPH40_RS08370;old_locus_tag=LPH40_08370 NZ_CP087685.1 Protein Homology CDS 2057849 2058568 . + 0 ID=cds-WP_038270945.1;Parent=gene-LPH40_RS08370;Dbxref=Genbank:WP_038270945.1;Name=WP_038270945.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsC;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086530.1;locus_tag=LPH40_RS08370;product=30S ribosomal protein S3;protein_id=WP_038270945.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2058574 2058987 . + . ID=gene-LPH40_RS08375;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=LPH40_RS08375;old_locus_tag=LPH40_08375 NZ_CP087685.1 Protein Homology CDS 2058574 2058987 . + 0 ID=cds-WP_038270946.1;Parent=gene-LPH40_RS08375;Dbxref=Genbank:WP_038270946.1;Name=WP_038270946.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplP;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003479591.1;locus_tag=LPH40_RS08375;product=50S ribosomal protein L16;protein_id=WP_038270946.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2058987 2059184 . + . ID=gene-LPH40_RS08380;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=LPH40_RS08380;old_locus_tag=LPH40_08380 NZ_CP087685.1 Protein Homology CDS 2058987 2059184 . + 0 ID=cds-WP_038270947.1;Parent=gene-LPH40_RS08380;Dbxref=Genbank:WP_038270947.1;Name=WP_038270947.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmC;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090108.1;locus_tag=LPH40_RS08380;product=50S ribosomal protein L29;protein_id=WP_038270947.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2059184 2059450 . + . ID=gene-LPH40_RS08385;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=LPH40_RS08385;old_locus_tag=LPH40_08385 NZ_CP087685.1 Protein Homology CDS 2059184 2059450 . + 0 ID=cds-WP_038270948.1;Parent=gene-LPH40_RS08385;Dbxref=Genbank:WP_038270948.1;Name=WP_038270948.1;Ontology_term=GO:0006412,GO:0003735,GO:0022627;gbkey=CDS;gene=rpsQ;go_component=cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993374.1;locus_tag=LPH40_RS08385;product=30S ribosomal protein S17;protein_id=WP_038270948.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2059474 2059842 . + . ID=gene-LPH40_RS08390;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=LPH40_RS08390;old_locus_tag=LPH40_08390 NZ_CP087685.1 Protein Homology CDS 2059474 2059842 . + 0 ID=cds-WP_038270950.1;Parent=gene-LPH40_RS08390;Dbxref=Genbank:WP_038270950.1;Name=WP_038270950.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplN;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012728338.1;locus_tag=LPH40_RS08390;product=50S ribosomal protein L14;protein_id=WP_038270950.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2059858 2060175 . + . ID=gene-LPH40_RS08395;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=LPH40_RS08395;old_locus_tag=LPH40_08395 NZ_CP087685.1 Protein Homology CDS 2059858 2060175 . + 0 ID=cds-WP_038271012.1;Parent=gene-LPH40_RS08395;Dbxref=Genbank:WP_038271012.1;Name=WP_038271012.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplX;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260025.1;locus_tag=LPH40_RS08395;product=50S ribosomal protein L24;protein_id=WP_038271012.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2060187 2060726 . + . ID=gene-LPH40_RS08400;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=LPH40_RS08400;old_locus_tag=LPH40_08400 NZ_CP087685.1 Protein Homology CDS 2060187 2060726 . + 0 ID=cds-WP_038270952.1;Parent=gene-LPH40_RS08400;Dbxref=Genbank:WP_038270952.1;Name=WP_038270952.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852426.1;locus_tag=LPH40_RS08400;product=50S ribosomal protein L5;protein_id=WP_038270952.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2060742 2061047 . + . ID=gene-LPH40_RS08405;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=LPH40_RS08405;old_locus_tag=LPH40_08405 NZ_CP087685.1 Protein Homology CDS 2060742 2061047 . + 0 ID=cds-WP_081755425.1;Parent=gene-LPH40_RS08405;Dbxref=Genbank:WP_081755425.1;Name=WP_081755425.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsN;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917137.1;locus_tag=LPH40_RS08405;product=30S ribosomal protein S14;protein_id=WP_081755425.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2061195 2061593 . + . ID=gene-LPH40_RS08410;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=LPH40_RS08410;old_locus_tag=LPH40_08410 NZ_CP087685.1 Protein Homology CDS 2061195 2061593 . + 0 ID=cds-WP_038270953.1;Parent=gene-LPH40_RS08410;Dbxref=Genbank:WP_038270953.1;Name=WP_038270953.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsH;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932726.1;locus_tag=LPH40_RS08410;product=30S ribosomal protein S8;protein_id=WP_038270953.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2061613 2062140 . + . ID=gene-LPH40_RS08415;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=LPH40_RS08415;old_locus_tag=LPH40_08415 NZ_CP087685.1 Protein Homology CDS 2061613 2062140 . + 0 ID=cds-WP_038270954.1;Parent=gene-LPH40_RS08415;Dbxref=Genbank:WP_038270954.1;Name=WP_038270954.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0022625;gbkey=CDS;gene=rplF;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450642.1;locus_tag=LPH40_RS08415;product=50S ribosomal protein L6;protein_id=WP_038270954.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2062198 2062557 . + . ID=gene-LPH40_RS08420;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=LPH40_RS08420;old_locus_tag=LPH40_08420 NZ_CP087685.1 Protein Homology CDS 2062198 2062557 . + 0 ID=cds-WP_038270955.1;Parent=gene-LPH40_RS08420;Dbxref=Genbank:WP_038270955.1;Name=WP_038270955.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplR;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811659.1;locus_tag=LPH40_RS08420;product=50S ribosomal protein L18;protein_id=WP_038270955.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2062735 2063271 . + . ID=gene-LPH40_RS08425;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=LPH40_RS08425;old_locus_tag=LPH40_08425 NZ_CP087685.1 Protein Homology CDS 2062735 2063271 . + 0 ID=cds-WP_051482296.1;Parent=gene-LPH40_RS08425;Dbxref=Genbank:WP_051482296.1;Name=WP_051482296.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsE;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090125.1;locus_tag=LPH40_RS08425;product=30S ribosomal protein S5;protein_id=WP_051482296.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2063264 2063455 . + . ID=gene-LPH40_RS08430;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=LPH40_RS08430;old_locus_tag=LPH40_08430 NZ_CP087685.1 Protein Homology CDS 2063264 2063455 . + 0 ID=cds-WP_038270956.1;Parent=gene-LPH40_RS08430;Dbxref=Genbank:WP_038270956.1;Name=WP_038270956.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmD;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486678.1;locus_tag=LPH40_RS08430;product=50S ribosomal protein L30;protein_id=WP_038270956.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2063462 2063905 . + . ID=gene-LPH40_RS08435;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=LPH40_RS08435;old_locus_tag=LPH40_08435 NZ_CP087685.1 Protein Homology CDS 2063462 2063905 . + 0 ID=cds-WP_069636208.1;Parent=gene-LPH40_RS08435;Dbxref=Genbank:WP_069636208.1;Name=WP_069636208.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplO;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486676.1;locus_tag=LPH40_RS08435;product=50S ribosomal protein L15;protein_id=WP_069636208.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2063913 2065286 . + . ID=gene-LPH40_RS08440;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=LPH40_RS08440;old_locus_tag=LPH40_08440 NZ_CP087685.1 Protein Homology CDS 2063913 2065286 . + 0 ID=cds-WP_038271017.1;Parent=gene-LPH40_RS08440;Dbxref=Genbank:WP_038271017.1;Name=WP_038271017.1;Ontology_term=GO:0043952,GO:0015450,GO:0005886;gbkey=CDS;gene=secY;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852429.1;locus_tag=LPH40_RS08440;product=preprotein translocase subunit SecY;protein_id=WP_038271017.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2065592 2065948 . + . ID=gene-LPH40_RS08445;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=LPH40_RS08445;old_locus_tag=LPH40_08445 NZ_CP087685.1 Protein Homology CDS 2065592 2065948 . + 0 ID=cds-WP_038270958.1;Parent=gene-LPH40_RS08445;Dbxref=Genbank:WP_038270958.1;Name=WP_038270958.1;Ontology_term=GO:0006412,GO:0003735,GO:0022627;gbkey=CDS;gene=rpsM;go_component=cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019935869.1;locus_tag=LPH40_RS08445;product=30S ribosomal protein S13;protein_id=WP_038270958.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2065962 2066354 . + . ID=gene-LPH40_RS08450;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=LPH40_RS08450;old_locus_tag=LPH40_08450 NZ_CP087685.1 Protein Homology CDS 2065962 2066354 . + 0 ID=cds-WP_038270959.1;Parent=gene-LPH40_RS08450;Dbxref=Genbank:WP_038270959.1;Name=WP_038270959.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090135.1;locus_tag=LPH40_RS08450;product=30S ribosomal protein S11;protein_id=WP_038270959.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2066369 2066995 . + . ID=gene-LPH40_RS08455;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=LPH40_RS08455;old_locus_tag=LPH40_08455 NZ_CP087685.1 Protein Homology CDS 2066369 2066995 . + 0 ID=cds-WP_038270961.1;Parent=gene-LPH40_RS08455;Dbxref=Genbank:WP_038270961.1;Name=WP_038270961.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0015935;gbkey=CDS;gene=rpsD;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004145446.1;locus_tag=LPH40_RS08455;product=30S ribosomal protein S4;protein_id=WP_038270961.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2067050 2068048 . + . ID=gene-LPH40_RS08460;Name=rpoA;gbkey=Gene;gene=rpoA;gene_biotype=protein_coding;locus_tag=LPH40_RS08460;old_locus_tag=LPH40_08460 NZ_CP087685.1 Protein Homology CDS 2067050 2068048 . + 0 ID=cds-WP_038270963.1;Parent=gene-LPH40_RS08460;Dbxref=Genbank:WP_038270963.1;Name=WP_038270963.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899,GO:0046983;gbkey=CDS;gene=rpoA;go_function=DNA binding|0003677||IEA,DNA-directed 5'-3' RNA polymerase activity|0003899||IEA,protein dimerization activity|0046983||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852431.1;locus_tag=LPH40_RS08460;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_038270963.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2068274 2068657 . + . ID=gene-LPH40_RS08465;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=LPH40_RS08465;old_locus_tag=LPH40_08465 NZ_CP087685.1 Protein Homology CDS 2068274 2068657 . + 0 ID=cds-WP_038270964.1;Parent=gene-LPH40_RS08465;Dbxref=Genbank:WP_038270964.1;Name=WP_038270964.1;Ontology_term=GO:0006412,GO:0003735,GO:0005762,GO:0022625;gbkey=CDS;gene=rplQ;go_component=mitochondrial large ribosomal subunit|0005762||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340456.1;locus_tag=LPH40_RS08465;product=50S ribosomal protein L17;protein_id=WP_038270964.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2070110 2070370 . + . ID=gene-LPH40_RS08470;Name=LPH40_RS08470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08470;old_locus_tag=LPH40_08470 NZ_CP087685.1 Protein Homology CDS 2070110 2070370 . + 0 ID=cds-WP_038270966.1;Parent=gene-LPH40_RS08470;Dbxref=Genbank:WP_038270966.1;Name=WP_038270966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086547.1;locus_tag=LPH40_RS08470;product=accessory factor UbiK family protein;protein_id=WP_038270966.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2070381 2071901 . + . ID=gene-LPH40_RS08475;Name=LPH40_RS08475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08475;old_locus_tag=LPH40_08475 NZ_CP087685.1 Protein Homology CDS 2070381 2071901 . + 0 ID=cds-WP_038270967.1;Parent=gene-LPH40_RS08475;Dbxref=Genbank:WP_038270967.1;Name=WP_038270967.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852434.1;locus_tag=LPH40_RS08475;product=YifB family Mg chelatase-like AAA ATPase;protein_id=WP_038270967.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2073638 2074579 . + . ID=gene-LPH40_RS08480;Name=LPH40_RS08480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08480;old_locus_tag=LPH40_08480 NZ_CP087685.1 Protein Homology CDS 2073638 2074579 . + 0 ID=cds-WP_230428167.1;Parent=gene-LPH40_RS08480;Dbxref=Genbank:WP_230428167.1;Name=WP_230428167.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012770.2;locus_tag=LPH40_RS08480;product=triacylglycerol lipase;protein_id=WP_230428167.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2074580 2075629 . + . ID=gene-LPH40_RS08485;Name=LPH40_RS08485;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS08485;old_locus_tag=LPH40_08485;pseudo=true NZ_CP087685.1 Protein Homology CDS 2074580 2075629 . + 0 ID=cds-LPH40_RS08485;Parent=gene-LPH40_RS08485;Note=internal stop;Ontology_term=GO:0006457,GO:0051082,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097653.1;locus_tag=LPH40_RS08485;product=lipase secretion chaperone;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2076314 2076400 . - . ID=gene-LPH40_RS08490;Name=LPH40_RS08490;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS08490;old_locus_tag=LPH40_08490 NZ_CP087685.1 tRNAscan-SE tRNA 2076314 2076400 . - . ID=rna-LPH40_RS08490;Parent=gene-LPH40_RS08490;anticodon=(pos:complement(2076364..2076366));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08490;product=tRNA-Leu NZ_CP087685.1 tRNAscan-SE exon 2076314 2076400 . - . ID=exon-LPH40_RS08490-1;Parent=rna-LPH40_RS08490;anticodon=(pos:complement(2076364..2076366));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08490;product=tRNA-Leu NZ_CP087685.1 RefSeq gene 2076536 2077828 . + . ID=gene-LPH40_RS08495;Name=LPH40_RS08495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08495;old_locus_tag=LPH40_08495 NZ_CP087685.1 Protein Homology CDS 2076536 2077828 . + 0 ID=cds-WP_038270969.1;Parent=gene-LPH40_RS08495;Dbxref=Genbank:WP_038270969.1;Name=WP_038270969.1;Ontology_term=GO:0000271,GO:0003979,GO:0016616,GO:0051287;gbkey=CDS;go_function=UDP-glucose 6-dehydrogenase activity|0003979||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852438.1;locus_tag=LPH40_RS08495;product=nucleotide sugar dehydrogenase;protein_id=WP_038270969.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2079860 2080321 . - . ID=gene-LPH40_RS08500;Name=LPH40_RS08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08500;old_locus_tag=LPH40_08500 NZ_CP087685.1 Protein Homology CDS 2079860 2080321 . - 0 ID=cds-WP_038270971.1;Parent=gene-LPH40_RS08500;Dbxref=Genbank:WP_038270971.1;Name=WP_038270971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852439.1;locus_tag=LPH40_RS08500;product=hypothetical protein;protein_id=WP_038270971.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2081726 2081809 . - . ID=gene-LPH40_RS08505;Name=LPH40_RS08505;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS08505;old_locus_tag=LPH40_08505 NZ_CP087685.1 tRNAscan-SE tRNA 2081726 2081809 . - . ID=rna-LPH40_RS08505;Parent=gene-LPH40_RS08505;anticodon=(pos:complement(2081773..2081775));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08505;product=tRNA-Leu NZ_CP087685.1 tRNAscan-SE exon 2081726 2081809 . - . ID=exon-LPH40_RS08505-1;Parent=rna-LPH40_RS08505;anticodon=(pos:complement(2081773..2081775));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08505;product=tRNA-Leu NZ_CP087685.1 RefSeq gene 2082217 2083512 . + . ID=gene-LPH40_RS08510;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=LPH40_RS08510;old_locus_tag=LPH40_08510 NZ_CP087685.1 Protein Homology CDS 2082217 2083512 . + 0 ID=cds-WP_038270973.1;Parent=gene-LPH40_RS08510;Dbxref=Genbank:WP_038270973.1;Name=WP_038270973.1;Ontology_term=GO:0051083,GO:0003755,GO:0051082,GO:0005854;gbkey=CDS;gene=tig;go_component=nascent polypeptide-associated complex|0005854||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,unfolded protein binding|0051082||IEA;go_process='de novo' cotranslational protein folding|0051083||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852440.1;locus_tag=LPH40_RS08510;product=trigger factor;protein_id=WP_038270973.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2083659 2084285 . + . ID=gene-LPH40_RS08515;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=LPH40_RS08515;old_locus_tag=LPH40_08515 NZ_CP087685.1 Protein Homology CDS 2083659 2084285 . + 0 ID=cds-WP_038270975.1;Parent=gene-LPH40_RS08515;Dbxref=Genbank:WP_038270975.1;Name=WP_038270975.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0009368;gbkey=CDS;gene=clpP;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806026.1;locus_tag=LPH40_RS08515;product=ATP-dependent Clp endopeptidase proteolytic subunit ClpP;protein_id=WP_038270975.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2084406 2085686 . + . ID=gene-LPH40_RS08520;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=LPH40_RS08520;old_locus_tag=LPH40_08520 NZ_CP087685.1 Protein Homology CDS 2084406 2085686 . + 0 ID=cds-WP_038270976.1;Parent=gene-LPH40_RS08520;Dbxref=Genbank:WP_038270976.1;Name=WP_038270976.1;Ontology_term=GO:0005524,GO:0008270,GO:0016887,GO:0046983;gbkey=CDS;gene=clpX;go_function=ATP binding|0005524||IEA,zinc ion binding|0008270||IEA,ATP hydrolysis activity|0016887||IEA,protein dimerization activity|0046983||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451747.1;locus_tag=LPH40_RS08520;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=WP_038270976.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2085836 2088304 . + . ID=gene-LPH40_RS08525;Name=lon;gbkey=Gene;gene=lon;gene_biotype=protein_coding;locus_tag=LPH40_RS08525;old_locus_tag=LPH40_08525 NZ_CP087685.1 Protein Homology CDS 2085836 2088304 . + 0 ID=cds-WP_038270977.1;Parent=gene-LPH40_RS08525;Dbxref=Genbank:WP_038270977.1;Name=WP_038270977.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0016887,GO:0043565;gbkey=CDS;gene=lon;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA,ATP hydrolysis activity|0016887||IEA,sequence-specific DNA binding|0043565||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852269.1;locus_tag=LPH40_RS08525;product=endopeptidase La;protein_id=WP_038270977.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2088525 2088809 . + . ID=gene-LPH40_RS08530;Name=LPH40_RS08530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08530;old_locus_tag=LPH40_08530 NZ_CP087685.1 Protein Homology CDS 2088525 2088809 . + 0 ID=cds-WP_038270979.1;Parent=gene-LPH40_RS08530;Dbxref=Genbank:WP_038270979.1;Name=WP_038270979.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904732.1;locus_tag=LPH40_RS08530;product=HU family DNA-binding protein;protein_id=WP_038270979.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2088811 2088885 . + . ID=gene-LPH40_RS08535;Name=LPH40_RS08535;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS08535;old_locus_tag=LPH40_08535 NZ_CP087685.1 tRNAscan-SE tRNA 2088811 2088885 . + . ID=rna-LPH40_RS08535;Parent=gene-LPH40_RS08535;anticodon=(pos:2088843..2088845);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08535;product=tRNA-Val NZ_CP087685.1 tRNAscan-SE exon 2088811 2088885 . + . ID=exon-LPH40_RS08535-1;Parent=rna-LPH40_RS08535;anticodon=(pos:2088843..2088845);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08535;product=tRNA-Val NZ_CP087685.1 RefSeq gene 2088916 2088992 . + . ID=gene-LPH40_RS08540;Name=LPH40_RS08540;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS08540;old_locus_tag=LPH40_08540 NZ_CP087685.1 tRNAscan-SE tRNA 2088916 2088992 . + . ID=rna-LPH40_RS08540;Parent=gene-LPH40_RS08540;anticodon=(pos:2088950..2088952);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08540;product=tRNA-Asp NZ_CP087685.1 tRNAscan-SE exon 2088916 2088992 . + . ID=exon-LPH40_RS08540-1;Parent=rna-LPH40_RS08540;anticodon=(pos:2088950..2088952);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS08540;product=tRNA-Asp NZ_CP087685.1 RefSeq gene 2089350 2091317 . + . ID=gene-LPH40_RS08545;Name=LPH40_RS08545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08545;old_locus_tag=LPH40_08545 NZ_CP087685.1 Protein Homology CDS 2089350 2091317 . + 0 ID=cds-WP_038270981.1;Parent=gene-LPH40_RS08545;Dbxref=Genbank:WP_038270981.1;Name=WP_038270981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920425.1;locus_tag=LPH40_RS08545;product=peptidylprolyl isomerase;protein_id=WP_038270981.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2092098 2093132 . + . ID=gene-LPH40_RS08550;Name=LPH40_RS08550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08550;old_locus_tag=LPH40_08550 NZ_CP087685.1 Protein Homology CDS 2092098 2093132 . + 0 ID=cds-WP_038270983.1;Parent=gene-LPH40_RS08550;Dbxref=Genbank:WP_038270983.1;Name=WP_038270983.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086557.1;locus_tag=LPH40_RS08550;product=DUF475 domain-containing protein;protein_id=WP_038270983.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2095839 2098310 . + . ID=gene-LPH40_RS08555;Name=LPH40_RS08555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08555;old_locus_tag=LPH40_08555 NZ_CP087685.1 Protein Homology CDS 2095839 2098310 . + 0 ID=cds-WP_038270984.1;Parent=gene-LPH40_RS08555;Dbxref=Genbank:WP_038270984.1;Name=WP_038270984.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893707.1;locus_tag=LPH40_RS08555;product=ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_038270984.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2098387 2099427 . + . ID=gene-LPH40_RS08560;Name=LPH40_RS08560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08560;old_locus_tag=LPH40_08560 NZ_CP087685.1 Protein Homology CDS 2098387 2099427 . + 0 ID=cds-WP_038270985.1;Parent=gene-LPH40_RS08560;Dbxref=Genbank:WP_038270985.1;Name=WP_038270985.1;Ontology_term=GO:0009263,GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017356462.1;locus_tag=LPH40_RS08560;product=ribonucleotide-diphosphate reductase subunit beta;protein_id=WP_038270985.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2099439 2099921 . + . ID=gene-LPH40_RS08565;Name=LPH40_RS08565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08565;old_locus_tag=LPH40_08565 NZ_CP087685.1 Protein Homology CDS 2099439 2099921 . + 0 ID=cds-WP_038270986.1;Parent=gene-LPH40_RS08565;Dbxref=Genbank:WP_038270986.1;Name=WP_038270986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852453.1;locus_tag=LPH40_RS08565;product=flavodoxin;protein_id=WP_038270986.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2099893 2100219 . + . ID=gene-LPH40_RS08570;Name=LPH40_RS08570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08570;old_locus_tag=LPH40_08570 NZ_CP087685.1 Protein Homology CDS 2099893 2100219 . + 0 ID=cds-WP_038270987.1;Parent=gene-LPH40_RS08570;Dbxref=Genbank:WP_038270987.1;Name=WP_038270987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156291.1;locus_tag=LPH40_RS08570;product=thioredoxin family protein;protein_id=WP_038270987.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2100252 2100437 . - . ID=gene-LPH40_RS08575;Name=LPH40_RS08575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08575;old_locus_tag=LPH40_08575 NZ_CP087685.1 GeneMarkS-2+ CDS 2100252 2100437 . - 0 ID=cds-WP_038270988.1;Parent=gene-LPH40_RS08575;Dbxref=Genbank:WP_038270988.1;Name=WP_038270988.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08575;product=hypothetical protein;protein_id=WP_038270988.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2100984 2101109 . + . ID=gene-LPH40_RS12030;Name=LPH40_RS12030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS12030 NZ_CP087685.1 GeneMarkS-2+ CDS 2100984 2101109 . + 0 ID=cds-WP_267903172.1;Parent=gene-LPH40_RS12030;Dbxref=Genbank:WP_267903172.1;Name=WP_267903172.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS12030;product=hypothetical protein;protein_id=WP_267903172.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2101192 2101407 . + . ID=gene-LPH40_RS08580;Name=LPH40_RS08580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08580;old_locus_tag=LPH40_08580 NZ_CP087685.1 GeneMarkS-2+ CDS 2101192 2101407 . + 0 ID=cds-WP_152536602.1;Parent=gene-LPH40_RS08580;Dbxref=Genbank:WP_152536602.1;Name=WP_152536602.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08580;product=hypothetical protein;protein_id=WP_152536602.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2101726 2102436 . + . ID=gene-LPH40_RS08585;Name=LPH40_RS08585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08585;old_locus_tag=LPH40_08585 NZ_CP087685.1 Protein Homology CDS 2101726 2102436 . + 0 ID=cds-WP_038270990.1;Parent=gene-LPH40_RS08585;Dbxref=Genbank:WP_038270990.1;Name=WP_038270990.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852452.1;locus_tag=LPH40_RS08585;product=16S rRNA pseudouridine(516) synthase;protein_id=WP_038270990.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2102433 2103113 . + . ID=gene-LPH40_RS08590;Name=LPH40_RS08590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08590;old_locus_tag=LPH40_08590 NZ_CP087685.1 Protein Homology CDS 2102433 2103113 . + 0 ID=cds-WP_038270991.1;Parent=gene-LPH40_RS08590;Dbxref=Genbank:WP_038270991.1;Name=WP_038270991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893711.1;locus_tag=LPH40_RS08590;product=HAD family phosphatase;protein_id=WP_038270991.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2103966 2104523 . - . ID=gene-LPH40_RS08595;Name=LPH40_RS08595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08595;old_locus_tag=LPH40_08595 NZ_CP087685.1 Protein Homology CDS 2103966 2104523 . - 0 ID=cds-WP_038270993.1;Parent=gene-LPH40_RS08595;Dbxref=Genbank:WP_038270993.1;Name=WP_038270993.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086564.1;locus_tag=LPH40_RS08595;product=DUF1415 domain-containing protein;protein_id=WP_038270993.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2106282 2106518 . + . ID=gene-LPH40_RS08600;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=LPH40_RS08600;old_locus_tag=LPH40_08600 NZ_CP087685.1 Protein Homology CDS 2106282 2106518 . + 0 ID=cds-WP_038270994.1;Parent=gene-LPH40_RS08600;Dbxref=Genbank:WP_038270994.1;Name=WP_038270994.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rpmB;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019185625.1;locus_tag=LPH40_RS08600;product=50S ribosomal protein L28;protein_id=WP_038270994.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2106529 2106696 . + . ID=gene-LPH40_RS08605;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=LPH40_RS08605;old_locus_tag=LPH40_08605 NZ_CP087685.1 Protein Homology CDS 2106529 2106696 . + 0 ID=cds-WP_171898073.1;Parent=gene-LPH40_RS08605;Dbxref=Genbank:WP_171898073.1;Name=WP_171898073.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmG;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001051801.1;locus_tag=LPH40_RS08605;product=50S ribosomal protein L33;protein_id=WP_171898073.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2106882 2108285 . + . ID=gene-LPH40_RS08610;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=LPH40_RS08610;old_locus_tag=LPH40_08610 NZ_CP087685.1 Protein Homology CDS 2106882 2108285 . + 0 ID=cds-WP_038270996.1;Parent=gene-LPH40_RS08610;Dbxref=Genbank:WP_038270996.1;Name=WP_038270996.1;Ontology_term=GO:0032049,GO:0008808;gbkey=CDS;gene=cls;go_function=cardiolipin synthase activity|0008808||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893717.1;locus_tag=LPH40_RS08610;product=cardiolipin synthase;protein_id=WP_038270996.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2109021 2110040 . - . ID=gene-LPH40_RS08615;Name=LPH40_RS08615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08615;old_locus_tag=LPH40_08615 NZ_CP087685.1 Protein Homology CDS 2109021 2110040 . - 0 ID=cds-WP_038270998.1;Parent=gene-LPH40_RS08615;Dbxref=Genbank:WP_038270998.1;Name=WP_038270998.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852569.1;locus_tag=LPH40_RS08615;product=tyrosine-type recombinase/integrase;protein_id=WP_038270998.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2110040 2110288 . - . ID=gene-LPH40_RS08620;Name=LPH40_RS08620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08620;old_locus_tag=LPH40_08620 NZ_CP087685.1 Protein Homology CDS 2110040 2110288 . - 0 ID=cds-WP_081755423.1;Parent=gene-LPH40_RS08620;Dbxref=Genbank:WP_081755423.1;Name=WP_081755423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852417.1;locus_tag=LPH40_RS08620;product=DUF4224 domain-containing protein;protein_id=WP_081755423.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2110343 2110879 . - . ID=gene-LPH40_RS08625;Name=LPH40_RS08625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08625;old_locus_tag=LPH40_08625 NZ_CP087685.1 Protein Homology CDS 2110343 2110879 . - 0 ID=cds-WP_038273354.1-2;Parent=gene-LPH40_RS08625;Dbxref=Genbank:WP_038273354.1;Name=WP_038273354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337723.1;locus_tag=LPH40_RS08625;product=pilin;protein_id=WP_038273354.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2110876 2112261 . - . ID=gene-LPH40_RS08630;Name=LPH40_RS08630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08630;old_locus_tag=LPH40_08630 NZ_CP087685.1 Protein Homology CDS 2110876 2112261 . - 0 ID=cds-WP_114867068.1-2;Parent=gene-LPH40_RS08630;Dbxref=Genbank:WP_114867068.1;Name=WP_114867068.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085030.1;locus_tag=LPH40_RS08630;product=DEAD/DEAH box helicase;protein_id=WP_114867068.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2112337 2112621 . + . ID=gene-LPH40_RS08635;Name=LPH40_RS08635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08635;old_locus_tag=LPH40_08635 NZ_CP087685.1 Protein Homology CDS 2112337 2112621 . + 0 ID=cds-WP_114867078.1;Parent=gene-LPH40_RS08635;Dbxref=Genbank:WP_114867078.1;Name=WP_114867078.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851619.1;locus_tag=LPH40_RS08635;product=DUF1640 domain-containing protein;protein_id=WP_114867078.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2112623 2112895 . - . ID=gene-LPH40_RS08640;Name=LPH40_RS08640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08640;old_locus_tag=LPH40_08640 NZ_CP087685.1 Protein Homology CDS 2112623 2112895 . - 0 ID=cds-WP_114867070.1-2;Parent=gene-LPH40_RS08640;Dbxref=Genbank:WP_114867070.1;Name=WP_114867070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382732.1;locus_tag=LPH40_RS08640;product=VRR-NUC domain-containing protein;protein_id=WP_114867070.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2112899 2114092 . - . ID=gene-LPH40_RS08645;Name=LPH40_RS08645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08645;old_locus_tag=LPH40_08645 NZ_CP087685.1 GeneMarkS-2+ CDS 2112899 2114092 . - 0 ID=cds-WP_230428169.1;Parent=gene-LPH40_RS08645;Dbxref=Genbank:WP_230428169.1;Name=WP_230428169.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08645;product=hypothetical protein;protein_id=WP_230428169.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2114049 2114747 . + . ID=gene-LPH40_RS08650;Name=LPH40_RS08650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08650;old_locus_tag=LPH40_08650 NZ_CP087685.1 Protein Homology CDS 2114049 2114747 . + 0 ID=cds-WP_114867079.1;Parent=gene-LPH40_RS08650;Dbxref=Genbank:WP_114867079.1;Name=WP_114867079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852371.1;locus_tag=LPH40_RS08650;product=hypothetical protein;protein_id=WP_114867079.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2114808 2115086 . + . ID=gene-LPH40_RS08655;Name=LPH40_RS08655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08655;old_locus_tag=LPH40_08655 NZ_CP087685.1 Protein Homology CDS 2114808 2115086 . + 0 ID=cds-WP_038273333.1;Parent=gene-LPH40_RS08655;Dbxref=Genbank:WP_038273333.1;Name=WP_038273333.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083921.1;locus_tag=LPH40_RS08655;product=BrnT family toxin;protein_id=WP_038273333.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2115052 2115363 . + . ID=gene-LPH40_RS08660;Name=LPH40_RS08660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08660;old_locus_tag=LPH40_08660 NZ_CP087685.1 Protein Homology CDS 2115052 2115363 . + 0 ID=cds-WP_038273331.1;Parent=gene-LPH40_RS08660;Dbxref=Genbank:WP_038273331.1;Name=WP_038273331.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084245.1;locus_tag=LPH40_RS08660;product=BrnA antitoxin family protein;protein_id=WP_038273331.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2115584 2116105 . + . ID=gene-LPH40_RS08665;Name=LPH40_RS08665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08665;old_locus_tag=LPH40_08665 NZ_CP087685.1 Protein Homology CDS 2115584 2116105 . + 0 ID=cds-WP_114867080.1;Parent=gene-LPH40_RS08665;Dbxref=Genbank:WP_114867080.1;Name=WP_114867080.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853008.1;locus_tag=LPH40_RS08665;product=lysozyme;protein_id=WP_114867080.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2116098 2116424 . + . ID=gene-LPH40_RS08670;Name=LPH40_RS08670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08670;old_locus_tag=LPH40_08670 NZ_CP087685.1 Protein Homology CDS 2116098 2116424 . + 0 ID=cds-WP_038272732.1;Parent=gene-LPH40_RS08670;Dbxref=Genbank:WP_038272732.1;Name=WP_038272732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852373.1;locus_tag=LPH40_RS08670;product=phage holin family protein;protein_id=WP_038272732.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2116414 2116875 . + . ID=gene-LPH40_RS08675;Name=LPH40_RS08675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08675;old_locus_tag=LPH40_08675 NZ_CP087685.1 Protein Homology CDS 2116414 2116875 . + 0 ID=cds-WP_038272730.1;Parent=gene-LPH40_RS08675;Dbxref=Genbank:WP_038272730.1;Name=WP_038272730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086887.1;locus_tag=LPH40_RS08675;product=hypothetical protein;protein_id=WP_038272730.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2116877 2117092 . + . ID=gene-LPH40_RS08680;Name=LPH40_RS08680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08680;old_locus_tag=LPH40_08680 NZ_CP087685.1 Protein Homology CDS 2116877 2117092 . + 0 ID=cds-WP_038272727.1;Parent=gene-LPH40_RS08680;Dbxref=Genbank:WP_038272727.1;Name=WP_038272727.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085111.1;locus_tag=LPH40_RS08680;product=hypothetical protein;protein_id=WP_038272727.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2117103 2117840 . + . ID=gene-LPH40_RS08685;Name=LPH40_RS08685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08685;old_locus_tag=LPH40_08685 NZ_CP087685.1 Protein Homology CDS 2117103 2117840 . + 0 ID=cds-WP_038272739.1;Parent=gene-LPH40_RS08685;Dbxref=Genbank:WP_038272739.1;Name=WP_038272739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085024.1;locus_tag=LPH40_RS08685;product=site-specific DNA-methyltransferase;protein_id=WP_038272739.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2117840 2118064 . + . ID=gene-LPH40_RS08690;Name=LPH40_RS08690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08690;old_locus_tag=LPH40_08690 NZ_CP087685.1 Protein Homology CDS 2117840 2118064 . + 0 ID=cds-WP_038272724.1;Parent=gene-LPH40_RS08690;Dbxref=Genbank:WP_038272724.1;Name=WP_038272724.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF039194.1;locus_tag=LPH40_RS08690;product=DUF5681 domain-containing protein;protein_id=WP_038272724.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2118073 2118543 . + . ID=gene-LPH40_RS08695;Name=LPH40_RS08695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08695;old_locus_tag=LPH40_08695 NZ_CP087685.1 Protein Homology CDS 2118073 2118543 . + 0 ID=cds-WP_051482379.1;Parent=gene-LPH40_RS08695;Dbxref=Genbank:WP_051482379.1;Name=WP_051482379.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015211.2;locus_tag=LPH40_RS08695;product=terminase family protein;protein_id=WP_051482379.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2118667 2118978 . + . ID=gene-LPH40_RS08700;Name=LPH40_RS08700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08700;old_locus_tag=LPH40_08700 NZ_CP087685.1 GeneMarkS-2+ CDS 2118667 2118978 . + 0 ID=cds-WP_038272721.1;Parent=gene-LPH40_RS08700;Dbxref=Genbank:WP_038272721.1;Name=WP_038272721.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08700;product=hypothetical protein;protein_id=WP_038272721.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2120129 2120746 . + . ID=gene-LPH40_RS08705;Name=LPH40_RS08705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08705;old_locus_tag=LPH40_08705 NZ_CP087685.1 Protein Homology CDS 2120129 2120746 . + 0 ID=cds-WP_038272719.1;Parent=gene-LPH40_RS08705;Dbxref=Genbank:WP_038272719.1;Name=WP_038272719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090201.1;locus_tag=LPH40_RS08705;product=glutathione binding-like protein;protein_id=WP_038272719.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2120919 2121905 . - . ID=gene-LPH40_RS08710;Name=LPH40_RS08710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08710;old_locus_tag=LPH40_08710 NZ_CP087685.1 Protein Homology CDS 2120919 2121905 . - 0 ID=cds-WP_038272716.1;Parent=gene-LPH40_RS08710;Dbxref=Genbank:WP_038272716.1;Name=WP_038272716.1;Ontology_term=GO:0006108,GO:0016615;gbkey=CDS;go_function=malate dehydrogenase activity|0016615||IEA;go_process=malate metabolic process|0006108||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003653591.1;locus_tag=LPH40_RS08710;product=malate dehydrogenase;protein_id=WP_038272716.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2122044 2122538 . - . ID=gene-LPH40_RS08715;Name=LPH40_RS08715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08715;old_locus_tag=LPH40_08715 NZ_CP087685.1 Protein Homology CDS 2122044 2122538 . - 0 ID=cds-WP_038272714.1;Parent=gene-LPH40_RS08715;Dbxref=Genbank:WP_038272714.1;Name=WP_038272714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090205.1;locus_tag=LPH40_RS08715;product=peptidylprolyl isomerase;protein_id=WP_038272714.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2122772 2124601 . + . ID=gene-LPH40_RS08720;Name=typA;gbkey=Gene;gene=typA;gene_biotype=protein_coding;locus_tag=LPH40_RS08720;old_locus_tag=LPH40_08720 NZ_CP087685.1 Protein Homology CDS 2122772 2124601 . + 0 ID=cds-WP_038272712.1;Parent=gene-LPH40_RS08720;Dbxref=Genbank:WP_038272712.1;Name=WP_038272712.1;Ontology_term=GO:0006412,GO:0006950,GO:0005525;gbkey=CDS;gene=typA;go_function=GTP binding|0005525||IEA;go_process=translation|0006412||IEA,response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904579.1;locus_tag=LPH40_RS08720;product=translational GTPase TypA;protein_id=WP_038272712.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2124621 2125106 . + . ID=gene-LPH40_RS08725;Name=LPH40_RS08725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08725;old_locus_tag=LPH40_08725 NZ_CP087685.1 Protein Homology CDS 2124621 2125106 . + 0 ID=cds-WP_038272710.1;Parent=gene-LPH40_RS08725;Dbxref=Genbank:WP_038272710.1;Name=WP_038272710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300716.1;locus_tag=LPH40_RS08725;product=DUF2127 domain-containing protein;protein_id=WP_038272710.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2125405 2125635 . + . ID=gene-LPH40_RS08730;Name=LPH40_RS08730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08730;old_locus_tag=LPH40_08730 NZ_CP087685.1 GeneMarkS-2+ CDS 2125405 2125635 . + 0 ID=cds-WP_152536658.1;Parent=gene-LPH40_RS08730;Dbxref=Genbank:WP_152536658.1;Name=WP_152536658.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08730;product=hypothetical protein;protein_id=WP_152536658.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2125681 2126943 . + . ID=gene-LPH40_RS08735;Name=LPH40_RS08735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08735;old_locus_tag=LPH40_08735 NZ_CP087685.1 Protein Homology CDS 2125681 2126943 . + 0 ID=cds-WP_038272708.1;Parent=gene-LPH40_RS08735;Dbxref=Genbank:WP_038272708.1;Name=WP_038272708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893724.1;locus_tag=LPH40_RS08735;product=HlyD family efflux transporter periplasmic adaptor subunit;protein_id=WP_038272708.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2127162 2127395 . + . ID=gene-LPH40_RS08740;Name=LPH40_RS08740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08740;old_locus_tag=LPH40_08740 NZ_CP087685.1 Protein Homology CDS 2127162 2127395 . + 0 ID=cds-WP_230430678.1;Parent=gene-LPH40_RS08740;Dbxref=Genbank:WP_230430678.1;Name=WP_230430678.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090213.1;locus_tag=LPH40_RS08740;product=hypothetical protein;protein_id=WP_230430678.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2127589 2127879 . + . ID=gene-LPH40_RS08745;Name=LPH40_RS08745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08745;old_locus_tag=LPH40_08745 NZ_CP087685.1 Protein Homology CDS 2127589 2127879 . + 0 ID=cds-WP_230428171.1;Parent=gene-LPH40_RS08745;Dbxref=Genbank:WP_230428171.1;Name=WP_230428171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893726.1;locus_tag=LPH40_RS08745;product=hypothetical protein;protein_id=WP_230428171.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2128080 2128343 . + . ID=gene-LPH40_RS08750;Name=LPH40_RS08750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08750;old_locus_tag=LPH40_08750 NZ_CP087685.1 Protein Homology CDS 2128080 2128343 . + 0 ID=cds-WP_081755482.1;Parent=gene-LPH40_RS08750;Dbxref=Genbank:WP_081755482.1;Name=WP_081755482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893727.1;locus_tag=LPH40_RS08750;product=hypothetical protein;protein_id=WP_081755482.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2128555 2128785 . + . ID=gene-LPH40_RS08755;Name=LPH40_RS08755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08755;old_locus_tag=LPH40_08755 NZ_CP087685.1 GeneMarkS-2+ CDS 2128555 2128785 . + 0 ID=cds-WP_152536657.1;Parent=gene-LPH40_RS08755;Dbxref=Genbank:WP_152536657.1;Name=WP_152536657.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08755;product=hypothetical protein;protein_id=WP_152536657.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2129223 2131334 . + . ID=gene-LPH40_RS08760;Name=LPH40_RS08760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08760;old_locus_tag=LPH40_08760 NZ_CP087685.1 Protein Homology CDS 2129223 2131334 . + 0 ID=cds-WP_038272702.1;Parent=gene-LPH40_RS08760;Dbxref=Genbank:WP_038272702.1;Name=WP_038272702.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090222.1;locus_tag=LPH40_RS08760;product=peptidase domain-containing ABC transporter;protein_id=WP_038272702.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2132341 2133120 . - . ID=gene-LPH40_RS08765;Name=LPH40_RS08765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08765;old_locus_tag=LPH40_08765 NZ_CP087685.1 Protein Homology CDS 2132341 2133120 . - 0 ID=cds-WP_038272700.1;Parent=gene-LPH40_RS08765;Dbxref=Genbank:WP_038272700.1;Name=WP_038272700.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893730.1;locus_tag=LPH40_RS08765;product=ABC transporter permease;protein_id=WP_038272700.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2133154 2134134 . - . ID=gene-LPH40_RS08770;Name=LPH40_RS08770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08770;old_locus_tag=LPH40_08770 NZ_CP087685.1 Protein Homology CDS 2133154 2134134 . - 0 ID=cds-WP_051482378.1;Parent=gene-LPH40_RS08770;Dbxref=Genbank:WP_051482378.1;Name=WP_051482378.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090226.1;locus_tag=LPH40_RS08770;product=ABC transporter ATP-binding protein;protein_id=WP_051482378.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2135111 2138797 . + . ID=gene-LPH40_RS08775;Name=LPH40_RS08775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08775;old_locus_tag=LPH40_08775 NZ_CP087685.1 Protein Homology CDS 2135111 2138797 . + 0 ID=cds-WP_114867210.1;Parent=gene-LPH40_RS08775;Dbxref=Genbank:WP_114867210.1;Name=WP_114867210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097665.1;locus_tag=LPH40_RS08775;product=pilus assembly protein;protein_id=WP_114867210.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2139448 2139924 . - . ID=gene-LPH40_RS08780;Name=LPH40_RS08780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08780;old_locus_tag=LPH40_08780 NZ_CP087685.1 Protein Homology CDS 2139448 2139924 . - 0 ID=cds-WP_038270586.1;Parent=gene-LPH40_RS08780;Dbxref=Genbank:WP_038270586.1;Name=WP_038270586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337698.1;locus_tag=LPH40_RS08780;product=hypothetical protein;protein_id=WP_038270586.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2141359 2141748 . - . ID=gene-LPH40_RS08785;Name=LPH40_RS08785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08785;old_locus_tag=LPH40_08785 NZ_CP087685.1 Protein Homology CDS 2141359 2141748 . - 0 ID=cds-WP_038270588.1;Parent=gene-LPH40_RS08785;Dbxref=Genbank:WP_038270588.1;Name=WP_038270588.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851560.1;locus_tag=LPH40_RS08785;product=hypothetical protein;protein_id=WP_038270588.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2142007 2144508 . - . ID=gene-LPH40_RS08790;Name=hrpB;gbkey=Gene;gene=hrpB;gene_biotype=protein_coding;locus_tag=LPH40_RS08790;old_locus_tag=LPH40_08790 NZ_CP087685.1 Protein Homology CDS 2142007 2144508 . - 0 ID=cds-WP_038270589.1;Parent=gene-LPH40_RS08790;Dbxref=Genbank:WP_038270589.1;Name=WP_038270589.1;Ontology_term=GO:0006139,GO:0004386;gbkey=CDS;gene=hrpB;go_function=helicase activity|0004386||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851559.1;locus_tag=LPH40_RS08790;product=ATP-dependent helicase HrpB;protein_id=WP_038270589.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2146107 2146304 . - . ID=gene-LPH40_RS08795;Name=LPH40_RS08795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08795;old_locus_tag=LPH40_08795 NZ_CP087685.1 GeneMarkS-2+ CDS 2146107 2146304 . - 0 ID=cds-WP_038270591.1;Parent=gene-LPH40_RS08795;Dbxref=Genbank:WP_038270591.1;Name=WP_038270591.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08795;product=hypothetical protein;protein_id=WP_038270591.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2146301 2146783 . - . ID=gene-LPH40_RS08800;Name=LPH40_RS08800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08800;old_locus_tag=LPH40_08800 NZ_CP087685.1 Protein Homology CDS 2146301 2146783 . - 0 ID=cds-WP_038270592.1;Parent=gene-LPH40_RS08800;Dbxref=Genbank:WP_038270592.1;Name=WP_038270592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084082.1;locus_tag=LPH40_RS08800;product=GAF domain-containing protein;protein_id=WP_038270592.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2147975 2149756 . + . ID=gene-LPH40_RS08805;Name=LPH40_RS08805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08805;old_locus_tag=LPH40_08805 NZ_CP087685.1 Protein Homology CDS 2147975 2149756 . + 0 ID=cds-WP_051482268.1;Parent=gene-LPH40_RS08805;Dbxref=Genbank:WP_051482268.1;Name=WP_051482268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260618.1;locus_tag=LPH40_RS08805;product=autotransporter assembly complex protein TamA;protein_id=WP_051482268.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2149807 2153589 . + . ID=gene-LPH40_RS08810;Name=LPH40_RS08810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08810;old_locus_tag=LPH40_08810 NZ_CP087685.1 Protein Homology CDS 2149807 2153589 . + 0 ID=cds-WP_230428275.1;Parent=gene-LPH40_RS08810;Dbxref=Genbank:WP_230428275.1;Name=WP_230428275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087207.1;locus_tag=LPH40_RS08810;product=translocation/assembly module TamB domain-containing protein;protein_id=WP_230428275.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2154664 2155563 . + . ID=gene-LPH40_RS08815;Name=prpB;gbkey=Gene;gene=prpB;gene_biotype=protein_coding;locus_tag=LPH40_RS08815;old_locus_tag=LPH40_08815 NZ_CP087685.1 Protein Homology CDS 2154664 2155563 . + 0 ID=cds-WP_038270595.1;Parent=gene-LPH40_RS08815;Dbxref=Genbank:WP_038270595.1;Name=WP_038270595.1;Ontology_term=GO:0019629,GO:0046421;gbkey=CDS;gene=prpB;go_function=methylisocitrate lyase activity|0046421||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337702.1;locus_tag=LPH40_RS08815;product=methylisocitrate lyase;protein_id=WP_038270595.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2155652 2155993 . - . ID=gene-LPH40_RS08820;Name=LPH40_RS08820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08820;old_locus_tag=LPH40_08820 NZ_CP087685.1 GeneMarkS-2+ CDS 2155652 2155993 . - 0 ID=cds-WP_051482270.1;Parent=gene-LPH40_RS08820;Dbxref=Genbank:WP_051482270.1;Name=WP_051482270.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08820;product=hypothetical protein;protein_id=WP_051482270.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2155905 2156444 . + . ID=gene-LPH40_RS08825;Name=LPH40_RS08825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08825;old_locus_tag=LPH40_08825 NZ_CP087685.1 Protein Homology CDS 2155905 2156444 . + 0 ID=cds-WP_081755406.1;Parent=gene-LPH40_RS08825;Dbxref=Genbank:WP_081755406.1;Name=WP_081755406.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012506.2;locus_tag=LPH40_RS08825;product=hypothetical protein;protein_id=WP_081755406.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2156447 2156572 . + . ID=gene-LPH40_RS12035;Name=LPH40_RS12035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS12035 NZ_CP087685.1 GeneMarkS-2+ CDS 2156447 2156572 . + 0 ID=cds-WP_267903173.1;Parent=gene-LPH40_RS12035;Dbxref=Genbank:WP_267903173.1;Name=WP_267903173.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS12035;product=hypothetical protein;protein_id=WP_267903173.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2156569 2159193 . + . ID=gene-LPH40_RS08830;Name=acnD;gbkey=Gene;gene=acnD;gene_biotype=protein_coding;locus_tag=LPH40_RS08830;old_locus_tag=LPH40_08830 NZ_CP087685.1 Protein Homology CDS 2156569 2159193 . + 0 ID=cds-WP_038270597.1;Parent=gene-LPH40_RS08830;Dbxref=Genbank:WP_038270597.1;Name=WP_038270597.1;Ontology_term=GO:0019629,GO:0047456;gbkey=CDS;gene=acnD;go_function=2-methylisocitrate dehydratase activity|0047456||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849833.1;locus_tag=LPH40_RS08830;product=Fe/S-dependent 2-methylisocitrate dehydratase AcnD;protein_id=WP_038270597.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2159561 2160757 . + . ID=gene-LPH40_RS08835;Name=prpF;gbkey=Gene;gene=prpF;gene_biotype=protein_coding;locus_tag=LPH40_RS08835;old_locus_tag=LPH40_08835 NZ_CP087685.1 Protein Homology CDS 2159561 2160757 . + 0 ID=cds-WP_038270598.1;Parent=gene-LPH40_RS08835;Dbxref=Genbank:WP_038270598.1;Name=WP_038270598.1;Ontology_term=GO:0019629;gbkey=CDS;gene=prpF;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097671.1;locus_tag=LPH40_RS08835;product=2-methylaconitate cis-trans isomerase PrpF;protein_id=WP_038270598.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2161003 2161131 . + . ID=gene-LPH40_RS12040;Name=LPH40_RS12040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS12040 NZ_CP087685.1 GeneMarkS-2+ CDS 2161003 2161131 . + 0 ID=cds-WP_267903174.1;Parent=gene-LPH40_RS12040;Dbxref=Genbank:WP_267903174.1;Name=WP_267903174.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS12040;product=hypothetical protein;protein_id=WP_267903174.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2163049 2163960 . - . ID=gene-LPH40_RS08840;Name=LPH40_RS08840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08840;old_locus_tag=LPH40_08840 NZ_CP087685.1 Protein Homology CDS 2163049 2163960 . - 0 ID=cds-WP_230428172.1;Parent=gene-LPH40_RS08840;Dbxref=Genbank:WP_230428172.1;Name=WP_230428172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087380.1;locus_tag=LPH40_RS08840;product=hypothetical protein;protein_id=WP_230428172.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2163983 2164165 . - . ID=gene-LPH40_RS08845;Name=LPH40_RS08845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08845;old_locus_tag=LPH40_08845 NZ_CP087685.1 GeneMarkS-2+ CDS 2163983 2164165 . - 0 ID=cds-WP_152536584.1;Parent=gene-LPH40_RS08845;Dbxref=Genbank:WP_152536584.1;Name=WP_152536584.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08845;product=hypothetical protein;protein_id=WP_152536584.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2164385 2164573 . + . ID=gene-LPH40_RS08850;Name=LPH40_RS08850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08850;old_locus_tag=LPH40_08850 NZ_CP087685.1 GeneMarkS-2+ CDS 2164385 2164573 . + 0 ID=cds-WP_038270600.1;Parent=gene-LPH40_RS08850;Dbxref=Genbank:WP_038270600.1;Name=WP_038270600.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08850;product=hypothetical protein;protein_id=WP_038270600.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2164923 2169848 . + . ID=gene-LPH40_RS08855;Name=LPH40_RS08855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08855;old_locus_tag=LPH40_08855 NZ_CP087685.1 Protein Homology CDS 2164923 2169848 . + 0 ID=cds-WP_038270601.1;Parent=gene-LPH40_RS08855;Dbxref=Genbank:WP_038270601.1;Name=WP_038270601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337707.1;locus_tag=LPH40_RS08855;product=alpha-2-macroglobulin;protein_id=WP_038270601.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2170398 2170664 . - . ID=gene-LPH40_RS08860;Name=LPH40_RS08860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08860;old_locus_tag=LPH40_08860 NZ_CP087685.1 Protein Homology CDS 2170398 2170664 . - 0 ID=cds-WP_038270602.1;Parent=gene-LPH40_RS08860;Dbxref=Genbank:WP_038270602.1;Name=WP_038270602.1;Ontology_term=GO:0006355,GO:0003677,GO:0046872;gbkey=CDS;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: protein motif:HMM:NF014624.2;locus_tag=LPH40_RS08860;product=metal-sensing transcriptional repressor;protein_id=WP_038270602.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2170677 2171477 . - . ID=gene-LPH40_RS08865;Name=LPH40_RS08865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08865;old_locus_tag=LPH40_08865 NZ_CP087685.1 Protein Homology CDS 2170677 2171477 . - 0 ID=cds-WP_038270603.1;Parent=gene-LPH40_RS08865;Dbxref=Genbank:WP_038270603.1;Name=WP_038270603.1;Ontology_term=GO:0035444,GO:0015099;gbkey=CDS;go_function=nickel cation transmembrane transporter activity|0015099||IEA;go_process=nickel cation transmembrane transport|0035444||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010953868.1;locus_tag=LPH40_RS08865;product=nickel/cobalt efflux transporter;protein_id=WP_038270603.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2172479 2173492 . - . ID=gene-LPH40_RS08870;Name=LPH40_RS08870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08870;old_locus_tag=LPH40_08870 NZ_CP087685.1 Protein Homology CDS 2172479 2173492 . - 0 ID=cds-WP_038270604.1;Parent=gene-LPH40_RS08870;Dbxref=Genbank:WP_038270604.1;Name=WP_038270604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087377.1;locus_tag=LPH40_RS08870;product=alpha/beta hydrolase;protein_id=WP_038270604.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2173717 2174586 . + . ID=gene-LPH40_RS08875;Name=LPH40_RS08875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08875;old_locus_tag=LPH40_08875 NZ_CP087685.1 Protein Homology CDS 2173717 2174586 . + 0 ID=cds-WP_038270605.1;Parent=gene-LPH40_RS08875;Dbxref=Genbank:WP_038270605.1;Name=WP_038270605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852361.1;locus_tag=LPH40_RS08875;product=AraC family transcriptional regulator;protein_id=WP_038270605.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2175804 2175965 . - . ID=gene-LPH40_RS08880;Name=LPH40_RS08880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08880;old_locus_tag=LPH40_08880 NZ_CP087685.1 GeneMarkS-2+ CDS 2175804 2175965 . - 0 ID=cds-WP_160165137.1;Parent=gene-LPH40_RS08880;Dbxref=Genbank:WP_160165137.1;Name=WP_160165137.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08880;product=hypothetical protein;protein_id=WP_160165137.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2177629 2177961 . - . ID=gene-LPH40_RS08885;Name=LPH40_RS08885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08885;old_locus_tag=LPH40_08885 NZ_CP087685.1 Protein Homology CDS 2177629 2177961 . - 0 ID=cds-WP_038270606.1;Parent=gene-LPH40_RS08885;Dbxref=Genbank:WP_038270606.1;Name=WP_038270606.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010671321.1;locus_tag=LPH40_RS08885;product=hypothetical protein;protein_id=WP_038270606.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2177958 2178974 . - . ID=gene-LPH40_RS08890;Name=LPH40_RS08890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08890;old_locus_tag=LPH40_08890 NZ_CP087685.1 Protein Homology CDS 2177958 2178974 . - 0 ID=cds-WP_038270607.1;Parent=gene-LPH40_RS08890;Dbxref=Genbank:WP_038270607.1;Name=WP_038270607.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_263987317.1;locus_tag=LPH40_RS08890;product=M4 family metallopeptidase;protein_id=WP_038270607.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2179998 2180579 . + . ID=gene-LPH40_RS08895;Name=orn;gbkey=Gene;gene=orn;gene_biotype=protein_coding;locus_tag=LPH40_RS08895;old_locus_tag=LPH40_08895 NZ_CP087685.1 Protein Homology CDS 2179998 2180579 . + 0 ID=cds-WP_038270608.1;Parent=gene-LPH40_RS08895;Dbxref=Genbank:WP_038270608.1;Name=WP_038270608.1;Ontology_term=GO:0000175,GO:0003676;gbkey=CDS;gene=orn;go_function=3'-5'-exoribonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852363.1;locus_tag=LPH40_RS08895;product=oligoribonuclease;protein_id=WP_038270608.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2180753 2181700 . - . ID=gene-LPH40_RS08900;Name=LPH40_RS08900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08900;old_locus_tag=LPH40_08900 NZ_CP087685.1 Protein Homology CDS 2180753 2181700 . - 0 ID=cds-WP_038270610.1;Parent=gene-LPH40_RS08900;Dbxref=Genbank:WP_038270610.1;Name=WP_038270610.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084046.1;locus_tag=LPH40_RS08900;product=mechanosensitive ion channel family protein;protein_id=WP_038270610.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2181700 2184075 . - . ID=gene-LPH40_RS08905;Name=ppsA;gbkey=Gene;gene=ppsA;gene_biotype=protein_coding;locus_tag=LPH40_RS08905;old_locus_tag=LPH40_08905 NZ_CP087685.1 Protein Homology CDS 2181700 2184075 . - 0 ID=cds-WP_038270703.1;Parent=gene-LPH40_RS08905;Dbxref=Genbank:WP_038270703.1;Name=WP_038270703.1;Ontology_term=GO:0006090,GO:0016310,GO:0005524,GO:0008986,GO:0016772;gbkey=CDS;gene=ppsA;go_function=ATP binding|0005524||IEA,pyruvate%2C water dikinase activity|0008986||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=pyruvate metabolic process|0006090||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097678.1;locus_tag=LPH40_RS08905;product=phosphoenolpyruvate synthase;protein_id=WP_038270703.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2184223 2185044 . + . ID=gene-LPH40_RS08910;Name=LPH40_RS08910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08910;old_locus_tag=LPH40_08910 NZ_CP087685.1 Protein Homology CDS 2184223 2185044 . + 0 ID=cds-WP_038270611.1;Parent=gene-LPH40_RS08910;Dbxref=Genbank:WP_038270611.1;Name=WP_038270611.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037311.1;locus_tag=LPH40_RS08910;product=kinase/pyrophosphorylase;protein_id=WP_038270611.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2185156 2185629 . + . ID=gene-LPH40_RS08915;Name=LPH40_RS08915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08915;old_locus_tag=LPH40_08915 NZ_CP087685.1 Protein Homology CDS 2185156 2185629 . + 0 ID=cds-WP_038270612.1;Parent=gene-LPH40_RS08915;Dbxref=Genbank:WP_038270612.1;Name=WP_038270612.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010342959.1;locus_tag=LPH40_RS08915;product=DUF1249 domain-containing protein;protein_id=WP_038270612.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2185697 2186185 . + . ID=gene-LPH40_RS08920;Name=LPH40_RS08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08920;old_locus_tag=LPH40_08920 NZ_CP087685.1 Protein Homology CDS 2185697 2186185 . + 0 ID=cds-WP_038270613.1;Parent=gene-LPH40_RS08920;Dbxref=Genbank:WP_038270613.1;Name=WP_038270613.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012511421.1;locus_tag=LPH40_RS08920;product=8-oxo-dGTP diphosphatase;protein_id=WP_038270613.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2186798 2188978 . - . ID=gene-LPH40_RS08925;Name=LPH40_RS08925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08925;old_locus_tag=LPH40_08925 NZ_CP087685.1 Protein Homology CDS 2186798 2188978 . - 0 ID=cds-WP_038270614.1;Parent=gene-LPH40_RS08925;Dbxref=Genbank:WP_038270614.1;Name=WP_038270614.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337710.1;locus_tag=LPH40_RS08925;product=autotransporter domain-containing protein;protein_id=WP_038270614.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2191015 2192325 . - . ID=gene-LPH40_RS08930;Name=LPH40_RS08930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08930;old_locus_tag=LPH40_08930 NZ_CP087685.1 Protein Homology CDS 2191015 2192325 . - 0 ID=cds-WP_038270615.1;Parent=gene-LPH40_RS08930;Dbxref=Genbank:WP_038270615.1;Name=WP_038270615.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893784.1;locus_tag=LPH40_RS08930;product=DUF445 domain-containing protein;protein_id=WP_038270615.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2193808 2194302 . - . ID=gene-LPH40_RS08935;Name=LPH40_RS08935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08935;old_locus_tag=LPH40_08935 NZ_CP087685.1 Protein Homology CDS 2193808 2194302 . - 0 ID=cds-WP_038270618.1;Parent=gene-LPH40_RS08935;Dbxref=Genbank:WP_038270618.1;Name=WP_038270618.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852801.1;locus_tag=LPH40_RS08935;product=phasin family protein;protein_id=WP_038270618.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2194818 2195618 . + . ID=gene-LPH40_RS08940;Name=LPH40_RS08940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08940;old_locus_tag=LPH40_08940 NZ_CP087685.1 Protein Homology CDS 2194818 2195618 . + 0 ID=cds-WP_038270619.1;Parent=gene-LPH40_RS08940;Dbxref=Genbank:WP_038270619.1;Name=WP_038270619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904651.1;locus_tag=LPH40_RS08940;product=FHA domain-containing protein;protein_id=WP_038270619.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2196328 2196606 . + . ID=gene-LPH40_RS08945;Name=LPH40_RS08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08945;old_locus_tag=LPH40_08945 NZ_CP087685.1 Protein Homology CDS 2196328 2196606 . + 0 ID=cds-WP_038270621.1;Parent=gene-LPH40_RS08945;Dbxref=Genbank:WP_038270621.1;Name=WP_038270621.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852798.1;locus_tag=LPH40_RS08945;product=DUF493 family protein;protein_id=WP_038270621.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2196594 2197295 . + . ID=gene-LPH40_RS08950;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;locus_tag=LPH40_RS08950;old_locus_tag=LPH40_08950 NZ_CP087685.1 Protein Homology CDS 2196594 2197295 . + 0 ID=cds-WP_038270622.1;Parent=gene-LPH40_RS08950;Dbxref=Genbank:WP_038270622.1;Name=WP_038270622.1;Ontology_term=GO:0009249,GO:0033819;gbkey=CDS;gene=lipB;go_function=lipoyl(octanoyl) transferase activity|0033819||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097682.1;locus_tag=LPH40_RS08950;product=lipoyl(octanoyl) transferase LipB;protein_id=WP_038270622.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2197312 2198322 . + . ID=gene-LPH40_RS08955;Name=lipA;gbkey=Gene;gene=lipA;gene_biotype=protein_coding;locus_tag=LPH40_RS08955;old_locus_tag=LPH40_08955 NZ_CP087685.1 Protein Homology CDS 2197312 2198322 . + 0 ID=cds-WP_038270623.1;Parent=gene-LPH40_RS08955;Dbxref=Genbank:WP_038270623.1;Name=WP_038270623.1;Ontology_term=GO:0009107,GO:0016992,GO:0051539,GO:1904047;gbkey=CDS;gene=lipA;go_function=lipoate synthase activity|0016992||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=lipoate biosynthetic process|0009107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090539.1;locus_tag=LPH40_RS08955;product=lipoyl synthase;protein_id=WP_038270623.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2198870 2199052 . + . ID=gene-LPH40_RS08960;Name=LPH40_RS08960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08960;old_locus_tag=LPH40_08960 NZ_CP087685.1 GeneMarkS-2+ CDS 2198870 2199052 . + 0 ID=cds-WP_038270624.1;Parent=gene-LPH40_RS08960;Dbxref=Genbank:WP_038270624.1;Name=WP_038270624.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08960;product=hypothetical protein;protein_id=WP_038270624.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2199615 2200103 . + . ID=gene-LPH40_RS08965;Name=LPH40_RS08965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08965;old_locus_tag=LPH40_08965 NZ_CP087685.1 GeneMarkS-2+ CDS 2199615 2200103 . + 0 ID=cds-WP_051482272.1;Parent=gene-LPH40_RS08965;Dbxref=Genbank:WP_051482272.1;Name=WP_051482272.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08965;product=hypothetical protein;protein_id=WP_051482272.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2200482 2200640 . + . ID=gene-LPH40_RS08970;Name=LPH40_RS08970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08970;old_locus_tag=LPH40_08970 NZ_CP087685.1 GeneMarkS-2+ CDS 2200482 2200640 . + 0 ID=cds-WP_160165139.1;Parent=gene-LPH40_RS08970;Dbxref=Genbank:WP_160165139.1;Name=WP_160165139.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08970;product=hypothetical protein;protein_id=WP_160165139.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2201054 2201512 . + . ID=gene-LPH40_RS08975;Name=LPH40_RS08975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08975;old_locus_tag=LPH40_08975 NZ_CP087685.1 GeneMarkS-2+ CDS 2201054 2201512 . + 0 ID=cds-WP_200866182.1;Parent=gene-LPH40_RS08975;Dbxref=Genbank:WP_200866182.1;Name=WP_200866182.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08975;product=hypothetical protein;protein_id=WP_200866182.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2201509 2201841 . + . ID=gene-LPH40_RS08980;Name=LPH40_RS08980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08980;old_locus_tag=LPH40_08980 NZ_CP087685.1 GeneMarkS-2+ CDS 2201509 2201841 . + 0 ID=cds-WP_200866183.1;Parent=gene-LPH40_RS08980;Dbxref=Genbank:WP_200866183.1;Name=WP_200866183.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08980;product=hypothetical protein;protein_id=WP_200866183.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2202145 2203458 . - . ID=gene-LPH40_RS08985;Name=LPH40_RS08985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08985;old_locus_tag=LPH40_08985 NZ_CP087685.1 Protein Homology CDS 2202145 2203458 . - 0 ID=cds-WP_038270626.1;Parent=gene-LPH40_RS08985;Dbxref=Genbank:WP_038270626.1;Name=WP_038270626.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051102.1;locus_tag=LPH40_RS08985;product=hemolysin family protein;protein_id=WP_038270626.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2204141 2205652 . - . ID=gene-LPH40_RS08990;Name=LPH40_RS08990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08990;old_locus_tag=LPH40_08990 NZ_CP087685.1 Protein Homology CDS 2204141 2205652 . - 0 ID=cds-WP_038270627.1;Parent=gene-LPH40_RS08990;Dbxref=Genbank:WP_038270627.1;Name=WP_038270627.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893788.1;locus_tag=LPH40_RS08990;product=S10 family peptidase;protein_id=WP_038270627.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2205680 2205850 . + . ID=gene-LPH40_RS08995;Name=LPH40_RS08995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS08995;old_locus_tag=LPH40_08995 NZ_CP087685.1 GeneMarkS-2+ CDS 2205680 2205850 . + 0 ID=cds-WP_160165140.1;Parent=gene-LPH40_RS08995;Dbxref=Genbank:WP_160165140.1;Name=WP_160165140.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS08995;product=hypothetical protein;protein_id=WP_160165140.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2206804 2208693 . - . ID=gene-LPH40_RS09000;Name=parE;gbkey=Gene;gene=parE;gene_biotype=protein_coding;locus_tag=LPH40_RS09000;old_locus_tag=LPH40_09000 NZ_CP087685.1 Protein Homology CDS 2206804 2208693 . - 0 ID=cds-WP_038270628.1;Parent=gene-LPH40_RS09000;Dbxref=Genbank:WP_038270628.1;Name=WP_038270628.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parE;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237730.1;locus_tag=LPH40_RS09000;product=DNA topoisomerase IV subunit B;protein_id=WP_038270628.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2208868 2209170 . + . ID=gene-LPH40_RS09005;Name=LPH40_RS09005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09005;old_locus_tag=LPH40_09005 NZ_CP087685.1 GeneMarkS-2+ CDS 2208868 2209170 . + 0 ID=cds-WP_230428173.1;Parent=gene-LPH40_RS09005;Dbxref=Genbank:WP_230428173.1;Name=WP_230428173.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09005;product=hypothetical protein;protein_id=WP_230428173.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2209319 2210983 . + . ID=gene-LPH40_RS09010;Name=LPH40_RS09010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09010;old_locus_tag=LPH40_09010 NZ_CP087685.1 Protein Homology CDS 2209319 2210983 . + 0 ID=cds-WP_038270629.1;Parent=gene-LPH40_RS09010;Dbxref=Genbank:WP_038270629.1;Name=WP_038270629.1;Ontology_term=GO:0006221,GO:0006241,GO:0003883;gbkey=CDS;go_function=CTP synthase activity|0003883||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,CTP biosynthetic process|0006241||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851538.1;locus_tag=LPH40_RS09010;product=CTP synthase;protein_id=WP_038270629.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2211125 2211955 . + . ID=gene-LPH40_RS09015;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=LPH40_RS09015;old_locus_tag=LPH40_09015 NZ_CP087685.1 Protein Homology CDS 2211125 2211955 . + 0 ID=cds-WP_038270707.1;Parent=gene-LPH40_RS09015;Dbxref=Genbank:WP_038270707.1;Name=WP_038270707.1;Ontology_term=GO:0009058,GO:0008676;gbkey=CDS;gene=kdsA;go_function=3-deoxy-8-phosphooctulonate synthase activity|0008676||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893795.1;locus_tag=LPH40_RS09015;product=3-deoxy-8-phosphooctulonate synthase;protein_id=WP_038270707.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2212588 2213880 . + . ID=gene-LPH40_RS09020;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=LPH40_RS09020;old_locus_tag=LPH40_09020 NZ_CP087685.1 Protein Homology CDS 2212588 2213880 . + 0 ID=cds-WP_038270631.1;Parent=gene-LPH40_RS09020;Dbxref=Genbank:WP_038270631.1;Name=WP_038270631.1;Ontology_term=GO:0006096,GO:0004634;gbkey=CDS;gene=eno;go_function=phosphopyruvate hydratase activity|0004634||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808113.1;locus_tag=LPH40_RS09020;product=phosphopyruvate hydratase;protein_id=WP_038270631.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2213884 2214240 . + . ID=gene-LPH40_RS09025;Name=ftsB;gbkey=Gene;gene=ftsB;gene_biotype=protein_coding;locus_tag=LPH40_RS09025;old_locus_tag=LPH40_09025 NZ_CP087685.1 Protein Homology CDS 2213884 2214240 . + 0 ID=cds-WP_038270632.1;Parent=gene-LPH40_RS09025;Dbxref=Genbank:WP_038270632.1;Name=WP_038270632.1;gbkey=CDS;gene=ftsB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097688.1;locus_tag=LPH40_RS09025;product=cell division protein FtsB;protein_id=WP_038270632.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2214237 2214932 . + . ID=gene-LPH40_RS09030;Name=ispD;gbkey=Gene;gene=ispD;gene_biotype=protein_coding;locus_tag=LPH40_RS09030;old_locus_tag=LPH40_09030 NZ_CP087685.1 Protein Homology CDS 2214237 2214932 . + 0 ID=cds-WP_038270634.1;Parent=gene-LPH40_RS09030;Dbxref=Genbank:WP_038270634.1;Name=WP_038270634.1;Ontology_term=GO:0019288,GO:0050518;gbkey=CDS;gene=ispD;go_function=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity|0050518||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893799.1;locus_tag=LPH40_RS09030;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=WP_038270634.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2214960 2215463 . + . ID=gene-LPH40_RS09035;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=LPH40_RS09035;old_locus_tag=LPH40_09035 NZ_CP087685.1 Protein Homology CDS 2214960 2215463 . + 0 ID=cds-WP_038270708.1;Parent=gene-LPH40_RS09035;Dbxref=Genbank:WP_038270708.1;Name=WP_038270708.1;Ontology_term=GO:0019288,GO:0008685;gbkey=CDS;gene=ispF;go_function=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase activity|0008685||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090564.1;locus_tag=LPH40_RS09035;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=WP_038270708.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2215684 2216226 . - . ID=gene-LPH40_RS09040;Name=LPH40_RS09040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09040;old_locus_tag=LPH40_09040 NZ_CP087685.1 Protein Homology CDS 2215684 2216226 . - 0 ID=cds-WP_038270636.1;Parent=gene-LPH40_RS09040;Dbxref=Genbank:WP_038270636.1;Name=WP_038270636.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237727.1;locus_tag=LPH40_RS09040;product=Smr/MutS family protein;protein_id=WP_038270636.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2216859 2217881 . - . ID=gene-LPH40_RS09045;Name=LPH40_RS09045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09045;old_locus_tag=LPH40_09045 NZ_CP087685.1 Protein Homology CDS 2216859 2217881 . - 0 ID=cds-WP_038270637.1;Parent=gene-LPH40_RS09045;Dbxref=Genbank:WP_038270637.1;Name=WP_038270637.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090566.1;locus_tag=LPH40_RS09045;product=SMP-30/gluconolactonase/LRE family protein;protein_id=WP_038270637.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2218482 2220128 . - . ID=gene-LPH40_RS09050;Name=LPH40_RS09050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09050;old_locus_tag=LPH40_09050 NZ_CP087685.1 Protein Homology CDS 2218482 2220128 . - 0 ID=cds-WP_038270639.1;Parent=gene-LPH40_RS09050;Dbxref=Genbank:WP_038270639.1;Name=WP_038270639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083995.1;locus_tag=LPH40_RS09050;product=electron transfer flavoprotein-ubiquinone oxidoreductase;protein_id=WP_038270639.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2220235 2220819 . + . ID=gene-LPH40_RS09055;Name=LPH40_RS09055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09055;old_locus_tag=LPH40_09055 NZ_CP087685.1 Protein Homology CDS 2220235 2220819 . + 0 ID=cds-WP_038270710.1;Parent=gene-LPH40_RS09055;Dbxref=Genbank:WP_038270710.1;Name=WP_038270710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851530.1;locus_tag=LPH40_RS09055;product=alpha-ketoglutarate-dependent dioxygenase AlkB;protein_id=WP_038270710.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2221032 2221673 . - . ID=gene-LPH40_RS09060;Name=LPH40_RS09060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09060;old_locus_tag=LPH40_09060 NZ_CP087685.1 Protein Homology CDS 2221032 2221673 . - 0 ID=cds-WP_038270640.1;Parent=gene-LPH40_RS09060;Dbxref=Genbank:WP_038270640.1;Name=WP_038270640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035875.1;locus_tag=LPH40_RS09060;product=ABC-type transport auxiliary lipoprotein family protein;protein_id=WP_038270640.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2221670 2222596 . - . ID=gene-LPH40_RS09065;Name=LPH40_RS09065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09065;old_locus_tag=LPH40_09065 NZ_CP087685.1 Protein Homology CDS 2221670 2222596 . - 0 ID=cds-WP_038270642.1;Parent=gene-LPH40_RS09065;Dbxref=Genbank:WP_038270642.1;Name=WP_038270642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903957.1;locus_tag=LPH40_RS09065;product=MlaD family protein;protein_id=WP_038270642.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2222600 2223439 . - . ID=gene-LPH40_RS09070;Name=LPH40_RS09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09070;old_locus_tag=LPH40_09070 NZ_CP087685.1 Protein Homology CDS 2222600 2223439 . - 0 ID=cds-WP_038270643.1;Parent=gene-LPH40_RS09070;Dbxref=Genbank:WP_038270643.1;Name=WP_038270643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090576.1;locus_tag=LPH40_RS09070;product=ABC transporter ATP-binding protein;protein_id=WP_038270643.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2223444 2224562 . - . ID=gene-LPH40_RS09075;Name=LPH40_RS09075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09075;old_locus_tag=LPH40_09075 NZ_CP087685.1 Protein Homology CDS 2223444 2224562 . - 0 ID=cds-WP_038270644.1;Parent=gene-LPH40_RS09075;Dbxref=Genbank:WP_038270644.1;Name=WP_038270644.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090577.1;locus_tag=LPH40_RS09075;product=ABC transporter permease;protein_id=WP_038270644.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2224699 2225958 . + . ID=gene-LPH40_RS09080;Name=LPH40_RS09080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09080;old_locus_tag=LPH40_09080 NZ_CP087685.1 Protein Homology CDS 2224699 2225958 . + 0 ID=cds-WP_038270645.1;Parent=gene-LPH40_RS09080;Dbxref=Genbank:WP_038270645.1;Name=WP_038270645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090578.1;locus_tag=LPH40_RS09080;product=threonine/serine exporter family protein;protein_id=WP_038270645.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2226290 2226463 . + . ID=gene-LPH40_RS09085;Name=LPH40_RS09085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09085;old_locus_tag=LPH40_09085 NZ_CP087685.1 Protein Homology CDS 2226290 2226463 . + 0 ID=cds-WP_171898045.1;Parent=gene-LPH40_RS09085;Dbxref=Genbank:WP_171898045.1;Name=WP_171898045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090579.1;locus_tag=LPH40_RS09085;product=hypothetical protein;protein_id=WP_171898045.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2226520 2226687 . + . ID=gene-LPH40_RS09090;Name=LPH40_RS09090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09090;old_locus_tag=LPH40_09090 NZ_CP087685.1 GeneMarkS-2+ CDS 2226520 2226687 . + 0 ID=cds-WP_160165141.1;Parent=gene-LPH40_RS09090;Dbxref=Genbank:WP_160165141.1;Name=WP_160165141.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09090;product=hypothetical protein;protein_id=WP_160165141.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2226742 2226894 . + . ID=gene-LPH40_RS09095;Name=LPH40_RS09095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09095;old_locus_tag=LPH40_09095 NZ_CP087685.1 GeneMarkS-2+ CDS 2226742 2226894 . + 0 ID=cds-WP_162814086.1;Parent=gene-LPH40_RS09095;Dbxref=Genbank:WP_162814086.1;Name=WP_162814086.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09095;product=hypothetical protein;protein_id=WP_162814086.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2226950 2227171 . + . ID=gene-LPH40_RS09100;Name=LPH40_RS09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09100;old_locus_tag=LPH40_09100 NZ_CP087685.1 GeneMarkS-2+ CDS 2226950 2227171 . + 0 ID=cds-WP_152536585.1;Parent=gene-LPH40_RS09100;Dbxref=Genbank:WP_152536585.1;Name=WP_152536585.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09100;product=hypothetical protein;protein_id=WP_152536585.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2227235 2227444 . + . ID=gene-LPH40_RS09105;Name=LPH40_RS09105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09105;old_locus_tag=LPH40_09105 NZ_CP087685.1 GeneMarkS-2+ CDS 2227235 2227444 . + 0 ID=cds-WP_152536586.1;Parent=gene-LPH40_RS09105;Dbxref=Genbank:WP_152536586.1;Name=WP_152536586.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09105;product=hypothetical protein;protein_id=WP_152536586.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2227496 2227738 . + . ID=gene-LPH40_RS09110;Name=LPH40_RS09110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09110;old_locus_tag=LPH40_09110 NZ_CP087685.1 GeneMarkS-2+ CDS 2227496 2227738 . + 0 ID=cds-WP_038270646.1;Parent=gene-LPH40_RS09110;Dbxref=Genbank:WP_038270646.1;Name=WP_038270646.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09110;product=hypothetical protein;protein_id=WP_038270646.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2227785 2227979 . + . ID=gene-LPH40_RS09115;Name=LPH40_RS09115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09115;old_locus_tag=LPH40_09115 NZ_CP087685.1 GeneMarkS-2+ CDS 2227785 2227979 . + 0 ID=cds-WP_152536587.1;Parent=gene-LPH40_RS09115;Dbxref=Genbank:WP_152536587.1;Name=WP_152536587.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09115;product=hypothetical protein;protein_id=WP_152536587.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2228442 2228693 . + . ID=gene-LPH40_RS09120;Name=LPH40_RS09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09120;old_locus_tag=LPH40_09120 NZ_CP087685.1 Protein Homology CDS 2228442 2228693 . + 0 ID=cds-WP_069636202.1;Parent=gene-LPH40_RS09120;Dbxref=Genbank:WP_069636202.1;Name=WP_069636202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337732.1;locus_tag=LPH40_RS09120;product=hypothetical protein;protein_id=WP_069636202.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2228706 2228948 . + . ID=gene-LPH40_RS09125;Name=LPH40_RS09125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09125;old_locus_tag=LPH40_09125 NZ_CP087685.1 Protein Homology CDS 2228706 2228948 . + 0 ID=cds-WP_038270712.1;Parent=gene-LPH40_RS09125;Dbxref=Genbank:WP_038270712.1;Name=WP_038270712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090583.1;locus_tag=LPH40_RS09125;product=hypothetical protein;protein_id=WP_038270712.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2229003 2229299 . + . ID=gene-LPH40_RS09130;Name=LPH40_RS09130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09130;old_locus_tag=LPH40_09130 NZ_CP087685.1 Protein Homology CDS 2229003 2229299 . + 0 ID=cds-WP_038270714.1;Parent=gene-LPH40_RS09130;Dbxref=Genbank:WP_038270714.1;Name=WP_038270714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084250.1;locus_tag=LPH40_RS09130;product=hypothetical protein;protein_id=WP_038270714.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2229378 2229647 . + . ID=gene-LPH40_RS09135;Name=LPH40_RS09135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09135;old_locus_tag=LPH40_09135 NZ_CP087685.1 Protein Homology CDS 2229378 2229647 . + 0 ID=cds-WP_038270647.1;Parent=gene-LPH40_RS09135;Dbxref=Genbank:WP_038270647.1;Name=WP_038270647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098067.1;locus_tag=LPH40_RS09135;product=hypothetical protein;protein_id=WP_038270647.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2230860 2231903 . + . ID=gene-LPH40_RS09140;Name=LPH40_RS09140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09140;old_locus_tag=LPH40_09140 NZ_CP087685.1 Protein Homology CDS 2230860 2231903 . + 0 ID=cds-WP_038270648.1;Parent=gene-LPH40_RS09140;Dbxref=Genbank:WP_038270648.1;Name=WP_038270648.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083920.1;locus_tag=LPH40_RS09140;product=rod shape-determining protein;protein_id=WP_038270648.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2232099 2232929 . + . ID=gene-LPH40_RS09145;Name=mreC;end_range=2232929,.;gbkey=Gene;gene=mreC;gene_biotype=pseudogene;locus_tag=LPH40_RS09145;old_locus_tag=LPH40_09145;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 2232099 2232929 . + 0 ID=cds-LPH40_RS09145;Parent=gene-LPH40_RS09145;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0008360;end_range=2232929,.;gbkey=CDS;gene=mreC;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089324.1;locus_tag=LPH40_RS09145;partial=true;product=rod shape-determining protein MreC;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2233061 2233546 . + . ID=gene-LPH40_RS09150;Name=mreD;gbkey=Gene;gene=mreD;gene_biotype=protein_coding;locus_tag=LPH40_RS09150;old_locus_tag=LPH40_09150 NZ_CP087685.1 Protein Homology CDS 2233061 2233546 . + 0 ID=cds-WP_038270649.1;Parent=gene-LPH40_RS09150;Dbxref=Genbank:WP_038270649.1;Name=WP_038270649.1;Ontology_term=GO:0008360,GO:0003674;gbkey=CDS;gene=mreD;go_function=molecular_function|0003674||IEA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911183.1;locus_tag=LPH40_RS09150;product=rod shape-determining protein MreD;protein_id=WP_038270649.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2233551 2235614 . + . ID=gene-LPH40_RS09155;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=LPH40_RS09155;old_locus_tag=LPH40_09155 NZ_CP087685.1 Protein Homology CDS 2233551 2235614 . + 0 ID=cds-WP_038270715.1;Parent=gene-LPH40_RS09155;Dbxref=Genbank:WP_038270715.1;Name=WP_038270715.1;Ontology_term=GO:0009252,GO:0003824;gbkey=CDS;gene=mrdA;go_function=catalytic activity|0003824||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851765.1;locus_tag=LPH40_RS09155;product=penicillin-binding protein 2;protein_id=WP_038270715.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2235611 2236732 . + . ID=gene-LPH40_RS09160;Name=rodA;gbkey=Gene;gene=rodA;gene_biotype=protein_coding;locus_tag=LPH40_RS09160;old_locus_tag=LPH40_09160 NZ_CP087685.1 Protein Homology CDS 2235611 2236732 . + 0 ID=cds-WP_038270650.1;Parent=gene-LPH40_RS09160;Dbxref=Genbank:WP_038270650.1;Name=WP_038270650.1;Ontology_term=GO:0008360;gbkey=CDS;gene=rodA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159496.1;locus_tag=LPH40_RS09160;product=rod shape-determining protein RodA;protein_id=WP_038270650.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2236833 2237873 . + . ID=gene-LPH40_RS09165;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=LPH40_RS09165;old_locus_tag=LPH40_09165 NZ_CP087685.1 Protein Homology CDS 2236833 2237873 . + 0 ID=cds-WP_038270651.1;Parent=gene-LPH40_RS09165;Dbxref=Genbank:WP_038270651.1;Name=WP_038270651.1;Ontology_term=GO:0016740,GO:0016853;gbkey=CDS;gene=queA;go_function=transferase activity|0016740||IEA,isomerase activity|0016853||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851767.1;locus_tag=LPH40_RS09165;product=tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA;protein_id=WP_038270651.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2238971 2241127 . + . ID=gene-LPH40_RS09170;Name=LPH40_RS09170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09170;old_locus_tag=LPH40_09170 NZ_CP087685.1 Protein Homology CDS 2238971 2241127 . + 0 ID=cds-WP_038270653.1;Parent=gene-LPH40_RS09170;Dbxref=Genbank:WP_038270653.1;Name=WP_038270653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852820.1;locus_tag=LPH40_RS09170;product=bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=WP_038270653.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2241232 2242743 . + . ID=gene-LPH40_RS09175;Name=LPH40_RS09175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09175;old_locus_tag=LPH40_09175 NZ_CP087685.1 Protein Homology CDS 2241232 2242743 . + 0 ID=cds-WP_038270654.1;Parent=gene-LPH40_RS09175;Dbxref=Genbank:WP_038270654.1;Name=WP_038270654.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851769.1;locus_tag=LPH40_RS09175;product=hypothetical protein;protein_id=WP_038270654.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2243195 2243698 . - . ID=gene-LPH40_RS09180;Name=LPH40_RS09180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09180;old_locus_tag=LPH40_09180 NZ_CP087685.1 Protein Homology CDS 2243195 2243698 . - 0 ID=cds-WP_038270655.1;Parent=gene-LPH40_RS09180;Dbxref=Genbank:WP_038270655.1;Name=WP_038270655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851771.1;locus_tag=LPH40_RS09180;product=hypothetical protein;protein_id=WP_038270655.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2243759 2244016 . - . ID=gene-LPH40_RS09185;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=LPH40_RS09185;old_locus_tag=LPH40_09185 NZ_CP087685.1 Protein Homology CDS 2243759 2244016 . - 0 ID=cds-WP_038270656.1;Parent=gene-LPH40_RS09185;Dbxref=Genbank:WP_038270656.1;Name=WP_038270656.1;Ontology_term=GO:0032955;gbkey=CDS;gene=minE;go_process=regulation of division septum assembly|0032955||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036323.1;locus_tag=LPH40_RS09185;product=cell division topological specificity factor MinE;protein_id=WP_038270656.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2244019 2244828 . - . ID=gene-LPH40_RS09190;Name=minD;gbkey=Gene;gene=minD;gene_biotype=protein_coding;locus_tag=LPH40_RS09190;old_locus_tag=LPH40_09190 NZ_CP087685.1 Protein Homology CDS 2244019 2244828 . - 0 ID=cds-WP_038270657.1;Parent=gene-LPH40_RS09190;Dbxref=Genbank:WP_038270657.1;Name=WP_038270657.1;Ontology_term=GO:0000918,GO:0016887;gbkey=CDS;gene=minD;go_function=ATP hydrolysis activity|0016887||IEA;go_process=division septum site selection|0000918||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006424120.1;locus_tag=LPH40_RS09190;product=septum site-determining protein MinD;protein_id=WP_038270657.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2244865 2245593 . - . ID=gene-LPH40_RS09195;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=LPH40_RS09195;old_locus_tag=LPH40_09195 NZ_CP087685.1 Protein Homology CDS 2244865 2245593 . - 0 ID=cds-WP_038270658.1;Parent=gene-LPH40_RS09195;Dbxref=Genbank:WP_038270658.1;Name=WP_038270658.1;Ontology_term=GO:0000918,GO:0004857;gbkey=CDS;gene=minC;go_function=enzyme inhibitor activity|0004857||IEA;go_process=division septum site selection|0000918||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007973818.1;locus_tag=LPH40_RS09195;product=septum site-determining protein MinC;protein_id=WP_038270658.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2245608 2246186 . - . ID=gene-LPH40_RS09200;Name=LPH40_RS09200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09200;old_locus_tag=LPH40_09200 NZ_CP087685.1 Protein Homology CDS 2245608 2246186 . - 0 ID=cds-WP_038270659.1;Parent=gene-LPH40_RS09200;Dbxref=Genbank:WP_038270659.1;Name=WP_038270659.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090598.1;locus_tag=LPH40_RS09200;product=GNAT family N-acetyltransferase;protein_id=WP_038270659.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2247102 2248274 . + . ID=gene-LPH40_RS09205;Name=LPH40_RS09205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09205;old_locus_tag=LPH40_09205 NZ_CP087685.1 Protein Homology CDS 2247102 2248274 . + 0 ID=cds-WP_038270660.1;Parent=gene-LPH40_RS09205;Dbxref=Genbank:WP_038270660.1;Name=WP_038270660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851774.1;locus_tag=LPH40_RS09205;product=SRPBCC family protein;protein_id=WP_038270660.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2248579 2249250 . + . ID=gene-LPH40_RS09210;Name=LPH40_RS09210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09210;old_locus_tag=LPH40_09210 NZ_CP087685.1 Protein Homology CDS 2248579 2249250 . + 0 ID=cds-WP_038270661.1;Parent=gene-LPH40_RS09210;Dbxref=Genbank:WP_038270661.1;Name=WP_038270661.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989995.1;locus_tag=LPH40_RS09210;product=DNA-3-methyladenine glycosylase;protein_id=WP_038270661.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2249651 2250217 . - . ID=gene-LPH40_RS09215;Name=LPH40_RS09215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09215;old_locus_tag=LPH40_09215 NZ_CP087685.1 Protein Homology CDS 2249651 2250217 . - 0 ID=cds-WP_038270662.1;Parent=gene-LPH40_RS09215;Dbxref=Genbank:WP_038270662.1;Name=WP_038270662.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893832.1;locus_tag=LPH40_RS09215;product=YceI family protein;protein_id=WP_038270662.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2250228 2250794 . - . ID=gene-LPH40_RS09220;Name=LPH40_RS09220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09220;old_locus_tag=LPH40_09220 NZ_CP087685.1 Protein Homology CDS 2250228 2250794 . - 0 ID=cds-WP_038270663.1;Parent=gene-LPH40_RS09220;Dbxref=Genbank:WP_038270663.1;Name=WP_038270663.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893833.1;locus_tag=LPH40_RS09220;product=cytochrome b;protein_id=WP_038270663.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2250806 2251510 . - . ID=gene-LPH40_RS09225;Name=LPH40_RS09225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09225;old_locus_tag=LPH40_09225 NZ_CP087685.1 Protein Homology CDS 2250806 2251510 . - 0 ID=cds-WP_069636203.1;Parent=gene-LPH40_RS09225;Dbxref=Genbank:WP_069636203.1;Name=WP_069636203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893834.1;locus_tag=LPH40_RS09225;product=YceI family protein;protein_id=WP_069636203.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2251603 2255175 . + . ID=gene-LPH40_RS09230;Name=LPH40_RS09230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09230;old_locus_tag=LPH40_09230 NZ_CP087685.1 Protein Homology CDS 2251603 2255175 . + 0 ID=cds-WP_038270665.1;Parent=gene-LPH40_RS09230;Dbxref=Genbank:WP_038270665.1;Name=WP_038270665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851779.1;locus_tag=LPH40_RS09230;product=hybrid sensor histidine kinase/response regulator;protein_id=WP_038270665.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2255882 2256178 . + . ID=gene-LPH40_RS09235;Name=LPH40_RS09235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09235;old_locus_tag=LPH40_09235 NZ_CP087685.1 GeneMarkS-2+ CDS 2255882 2256178 . + 0 ID=cds-WP_160199301.1;Parent=gene-LPH40_RS09235;Dbxref=Genbank:WP_160199301.1;Name=WP_160199301.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09235;product=hypothetical protein;protein_id=WP_160199301.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2256463 2257527 . - . ID=gene-LPH40_RS09240;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=LPH40_RS09240;old_locus_tag=LPH40_09240 NZ_CP087685.1 Protein Homology CDS 2256463 2257527 . - 0 ID=cds-WP_038270667.1;Parent=gene-LPH40_RS09240;Dbxref=Genbank:WP_038270667.1;Name=WP_038270667.1;Ontology_term=GO:0006779,GO:0004853;gbkey=CDS;gene=hemE;go_function=uroporphyrinogen decarboxylase activity|0004853||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407863.1;locus_tag=LPH40_RS09240;product=uroporphyrinogen decarboxylase;protein_id=WP_038270667.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2257943 2259055 . - . ID=gene-LPH40_RS09245;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=LPH40_RS09245;old_locus_tag=LPH40_09245 NZ_CP087685.1 Protein Homology CDS 2257943 2259055 . - 0 ID=cds-WP_038270668.1;Parent=gene-LPH40_RS09245;Dbxref=Genbank:WP_038270668.1;Name=WP_038270668.1;Ontology_term=GO:0009423,GO:0003856;gbkey=CDS;gene=aroB;go_function=3-dehydroquinate synthase activity|0003856||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851784.1;locus_tag=LPH40_RS09245;product=3-dehydroquinate synthase;protein_id=WP_038270668.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2259052 2259594 . - . ID=gene-LPH40_RS09250;Name=LPH40_RS09250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09250;old_locus_tag=LPH40_09250 NZ_CP087685.1 Protein Homology CDS 2259052 2259594 . - 0 ID=cds-WP_038270669.1;Parent=gene-LPH40_RS09250;Dbxref=Genbank:WP_038270669.1;Name=WP_038270669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917545.1;locus_tag=LPH40_RS09250;product=shikimate kinase;protein_id=WP_038270669.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2259871 2260470 . + . ID=gene-LPH40_RS09255;Name=pdxH;gbkey=Gene;gene=pdxH;gene_biotype=protein_coding;locus_tag=LPH40_RS09255;old_locus_tag=LPH40_09255 NZ_CP087685.1 Protein Homology CDS 2259871 2260470 . + 0 ID=cds-WP_038270670.1;Parent=gene-LPH40_RS09255;Dbxref=Genbank:WP_038270670.1;Name=WP_038270670.1;Ontology_term=GO:0008615,GO:0004733,GO:0010181;gbkey=CDS;gene=pdxH;go_function=pyridoxamine-phosphate oxidase activity|0004733||IEA,FMN binding|0010181||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381128.1;locus_tag=LPH40_RS09255;product=pyridoxamine 5'-phosphate oxidase;protein_id=WP_038270670.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2260581 2260853 . + . ID=gene-LPH40_RS09260;Name=LPH40_RS09260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09260;old_locus_tag=LPH40_09260 NZ_CP087685.1 Protein Homology CDS 2260581 2260853 . + 0 ID=cds-WP_038270672.1;Parent=gene-LPH40_RS09260;Dbxref=Genbank:WP_038270672.1;Name=WP_038270672.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013676.2;locus_tag=LPH40_RS09260;product=Tn3 family transposase;protein_id=WP_038270672.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2261357 2263099 . - . ID=gene-LPH40_RS09265;Name=LPH40_RS09265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09265;old_locus_tag=LPH40_09265 NZ_CP087685.1 Protein Homology CDS 2261357 2263099 . - 0 ID=cds-WP_038270716.1;Parent=gene-LPH40_RS09265;Dbxref=Genbank:WP_038270716.1;Name=WP_038270716.1;Ontology_term=GO:0006425,GO:0000166,GO:0004819,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,glutamine-tRNA ligase activity|0004819||IEA,ATP binding|0005524||IEA;go_process=glutaminyl-tRNA aminoacylation|0006425||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017915896.1;locus_tag=LPH40_RS09265;product=glutamine--tRNA ligase/YqeY domain fusion protein;protein_id=WP_038270716.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2263389 2263583 . + . ID=gene-LPH40_RS09270;Name=LPH40_RS09270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09270;old_locus_tag=LPH40_09270 NZ_CP087685.1 GeneMarkS-2+ CDS 2263389 2263583 . + 0 ID=cds-WP_038270675.1;Parent=gene-LPH40_RS09270;Dbxref=Genbank:WP_038270675.1;Name=WP_038270675.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09270;product=hypothetical protein;protein_id=WP_038270675.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2263927 2264100 . + . ID=gene-LPH40_RS09275;Name=LPH40_RS09275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09275;old_locus_tag=LPH40_09275 NZ_CP087685.1 GeneMarkS-2+ CDS 2263927 2264100 . + 0 ID=cds-WP_160165144.1;Parent=gene-LPH40_RS09275;Dbxref=Genbank:WP_160165144.1;Name=WP_160165144.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09275;product=hypothetical protein;protein_id=WP_160165144.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2264221 2264955 . + . ID=gene-LPH40_RS09280;Name=LPH40_RS09280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09280;old_locus_tag=LPH40_09280 NZ_CP087685.1 Protein Homology CDS 2264221 2264955 . + 0 ID=cds-WP_038270676.1;Parent=gene-LPH40_RS09280;Dbxref=Genbank:WP_038270676.1;Name=WP_038270676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090628.1;locus_tag=LPH40_RS09280;product=copper homeostasis protein CutC;protein_id=WP_038270676.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2266324 2266482 . + . ID=gene-LPH40_RS09285;Name=LPH40_RS09285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09285;old_locus_tag=LPH40_09285 NZ_CP087685.1 GeneMarkS-2+ CDS 2266324 2266482 . + 0 ID=cds-WP_160165146.1;Parent=gene-LPH40_RS09285;Dbxref=Genbank:WP_160165146.1;Name=WP_160165146.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09285;product=hypothetical protein;protein_id=WP_160165146.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2266684 2266929 . + . ID=gene-LPH40_RS09290;Name=LPH40_RS09290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09290;old_locus_tag=LPH40_09290 NZ_CP087685.1 Protein Homology CDS 2266684 2266929 . + 0 ID=cds-WP_230428174.1;Parent=gene-LPH40_RS09290;Dbxref=Genbank:WP_230428174.1;Name=WP_230428174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893847.1;locus_tag=LPH40_RS09290;product=hypothetical protein;protein_id=WP_230428174.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2267266 2268369 . + . ID=gene-LPH40_RS09295;Name=LPH40_RS09295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09295;old_locus_tag=LPH40_09295 NZ_CP087685.1 Protein Homology CDS 2267266 2268369 . + 0 ID=cds-WP_038270679.1;Parent=gene-LPH40_RS09295;Dbxref=Genbank:WP_038270679.1;Name=WP_038270679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089499.1;locus_tag=LPH40_RS09295;product=sulfate ABC transporter substrate-binding protein;protein_id=WP_038270679.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2268373 2269233 . + . ID=gene-LPH40_RS09300;Name=cysT;gbkey=Gene;gene=cysT;gene_biotype=protein_coding;locus_tag=LPH40_RS09300;old_locus_tag=LPH40_09300 NZ_CP087685.1 Protein Homology CDS 2268373 2269233 . + 0 ID=cds-WP_038270680.1;Parent=gene-LPH40_RS09300;Dbxref=Genbank:WP_038270680.1;Name=WP_038270680.1;Ontology_term=GO:0008272,GO:0015419,GO:0005886,GO:0055052;gbkey=CDS;gene=cysT;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transport|0008272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090632.1;locus_tag=LPH40_RS09300;product=sulfate ABC transporter permease subunit CysT;protein_id=WP_038270680.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2269245 2270189 . + . ID=gene-LPH40_RS09305;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=LPH40_RS09305;old_locus_tag=LPH40_09305 NZ_CP087685.1 Protein Homology CDS 2269245 2270189 . + 0 ID=cds-WP_051482278.1;Parent=gene-LPH40_RS09305;Dbxref=Genbank:WP_051482278.1;Name=WP_051482278.1;Ontology_term=GO:0008272,GO:0015419,GO:0005886,GO:0055052;gbkey=CDS;gene=cysW;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transport|0008272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506838.1;locus_tag=LPH40_RS09305;product=sulfate ABC transporter permease subunit CysW;protein_id=WP_051482278.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2270203 2271249 . + . ID=gene-LPH40_RS09310;Name=LPH40_RS09310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09310;old_locus_tag=LPH40_09310 NZ_CP087685.1 Protein Homology CDS 2270203 2271249 . + 0 ID=cds-WP_038270717.1;Parent=gene-LPH40_RS09310;Dbxref=Genbank:WP_038270717.1;Name=WP_038270717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156238.1;locus_tag=LPH40_RS09310;product=sulfate/molybdate ABC transporter ATP-binding protein;protein_id=WP_038270717.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2271936 2272532 . - . ID=gene-LPH40_RS09315;Name=LPH40_RS09315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09315;old_locus_tag=LPH40_09315 NZ_CP087685.1 Protein Homology CDS 2271936 2272532 . - 0 ID=cds-WP_162814073.1;Parent=gene-LPH40_RS09315;Dbxref=Genbank:WP_162814073.1;Name=WP_162814073.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017739.2;locus_tag=LPH40_RS09315;product=contractile injection system protein%2C VgrG/Pvc8 family;protein_id=WP_162814073.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2272720 2272800 . - . ID=gene-LPH40_RS09320;Name=LPH40_RS09320;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS09320;old_locus_tag=LPH40_09320;partial=true;pseudo=true;start_range=.,2272720 NZ_CP087685.1 Protein Homology CDS 2272720 2272800 . - 0 ID=cds-LPH40_RS09320;Parent=gene-LPH40_RS09320;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017316.2;locus_tag=LPH40_RS09320;partial=true;product=tail protein X;pseudo=true;start_range=.,2272720;transl_table=11 NZ_CP087685.1 RefSeq gene 2272797 2273051 . - . ID=gene-LPH40_RS09325;Name=LPH40_RS09325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09325;old_locus_tag=LPH40_09325 NZ_CP087685.1 Protein Homology CDS 2272797 2273051 . - 0 ID=cds-WP_230428278.1;Parent=gene-LPH40_RS09325;Dbxref=Genbank:WP_230428278.1;Name=WP_230428278.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018674.2;locus_tag=LPH40_RS09325;product=phage tail protein;protein_id=WP_230428278.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2273124 2273606 . - . ID=gene-LPH40_RS09330;Name=LPH40_RS09330;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS09330;old_locus_tag=LPH40_09330;pseudo=true NZ_CP087685.1 Protein Homology CDS 2273124 2273606 . - 0 ID=cds-LPH40_RS09330;Parent=gene-LPH40_RS09330;Note=internal stop;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: protein motif:HMM:TIGR01634.1;locus_tag=LPH40_RS09330;product=phage tail protein I;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2273599 2274492 . - . ID=gene-LPH40_RS09335;Name=LPH40_RS09335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09335;old_locus_tag=LPH40_09335 NZ_CP087685.1 Protein Homology CDS 2273599 2274492 . - 0 ID=cds-WP_038270682.1;Parent=gene-LPH40_RS09335;Dbxref=Genbank:WP_038270682.1;Name=WP_038270682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893248.1;locus_tag=LPH40_RS09335;product=baseplate J/gp47 family protein;protein_id=WP_038270682.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2274492 2274821 . - . ID=gene-LPH40_RS09340;Name=LPH40_RS09340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09340;old_locus_tag=LPH40_09340 NZ_CP087685.1 Protein Homology CDS 2274492 2274821 . - 0 ID=cds-WP_230428175.1;Parent=gene-LPH40_RS09340;Dbxref=Genbank:WP_230428175.1;Name=WP_230428175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088650.1;locus_tag=LPH40_RS09340;product=GPW/gp25 family protein;protein_id=WP_230428175.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2274922 2275200 . + . ID=gene-LPH40_RS09345;Name=LPH40_RS09345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09345;old_locus_tag=LPH40_09345 NZ_CP087685.1 Protein Homology CDS 2274922 2275200 . + 0 ID=cds-WP_038270683.1;Parent=gene-LPH40_RS09345;Dbxref=Genbank:WP_038270683.1;Name=WP_038270683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010952670.1;locus_tag=LPH40_RS09345;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_038270683.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2275204 2275503 . + . ID=gene-LPH40_RS09350;Name=LPH40_RS09350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09350;old_locus_tag=LPH40_09350 NZ_CP087685.1 Protein Homology CDS 2275204 2275503 . + 0 ID=cds-WP_081755408.1;Parent=gene-LPH40_RS09350;Dbxref=Genbank:WP_081755408.1;Name=WP_081755408.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020850959.1;locus_tag=LPH40_RS09350;product=HigA family addiction module antitoxin;protein_id=WP_081755408.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2275513 2275809 . - . ID=gene-LPH40_RS09355;Name=LPH40_RS09355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09355;old_locus_tag=LPH40_09355 NZ_CP087685.1 Protein Homology CDS 2275513 2275809 . - 0 ID=cds-WP_230428176.1;Parent=gene-LPH40_RS09355;Dbxref=Genbank:WP_230428176.1;Name=WP_230428176.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: protein motif:HMM:TIGR01644.1;locus_tag=LPH40_RS09355;product=phage baseplate assembly protein V;protein_id=WP_230428176.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2275763 2275972 . - . ID=gene-LPH40_RS09360;Name=LPH40_RS09360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09360;old_locus_tag=LPH40_09360 NZ_CP087685.1 Protein Homology CDS 2275763 2275972 . - 0 ID=cds-WP_230428177.1;Parent=gene-LPH40_RS09360;Dbxref=Genbank:WP_230428177.1;Name=WP_230428177.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: protein motif:HMM:TIGR01644.1;locus_tag=LPH40_RS09360;product=phage baseplate assembly protein V;protein_id=WP_230428177.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2275972 2276625 . - . ID=gene-LPH40_RS09365;Name=LPH40_RS09365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09365;old_locus_tag=LPH40_09365 NZ_CP087685.1 GeneMarkS-2+ CDS 2275972 2276625 . - 0 ID=cds-WP_230428178.1;Parent=gene-LPH40_RS09365;Dbxref=Genbank:WP_230428178.1;Name=WP_230428178.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09365;product=hypothetical protein;protein_id=WP_230428178.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2276601 2277050 . - . ID=gene-LPH40_RS09370;Name=LPH40_RS09370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09370;old_locus_tag=LPH40_09370 NZ_CP087685.1 Protein Homology CDS 2276601 2277050 . - 0 ID=cds-WP_230428179.1;Parent=gene-LPH40_RS09370;Dbxref=Genbank:WP_230428179.1;Name=WP_230428179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852727.1;locus_tag=LPH40_RS09370;product=hypothetical protein;protein_id=WP_230428179.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2277140 2277433 . - . ID=gene-LPH40_RS09375;Name=LPH40_RS09375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09375;old_locus_tag=LPH40_09375 NZ_CP087685.1 GeneMarkS-2+ CDS 2277140 2277433 . - 0 ID=cds-WP_038270685.1;Parent=gene-LPH40_RS09375;Dbxref=Genbank:WP_038270685.1;Name=WP_038270685.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09375;product=hypothetical protein;protein_id=WP_038270685.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2277771 2278019 . - . ID=gene-LPH40_RS09380;Name=LPH40_RS09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09380;old_locus_tag=LPH40_09380 NZ_CP087685.1 GeneMarkS-2+ CDS 2277771 2278019 . - 0 ID=cds-WP_038270686.1;Parent=gene-LPH40_RS09380;Dbxref=Genbank:WP_038270686.1;Name=WP_038270686.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09380;product=hypothetical protein;protein_id=WP_038270686.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2278058 2279442 . - . ID=gene-LPH40_RS09385;Name=LPH40_RS09385;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS09385;old_locus_tag=LPH40_09385;pseudo=true NZ_CP087685.1 Protein Homology CDS 2278058 2279442 . - 0 ID=cds-LPH40_RS09385;Parent=gene-LPH40_RS09385;Note=frameshifted%3B internal stop;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097617.1;locus_tag=LPH40_RS09385;product=phage major capsid protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2279541 2279990 . - . ID=gene-LPH40_RS09390;Name=LPH40_RS09390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09390;old_locus_tag=LPH40_09390 NZ_CP087685.1 GeneMarkS-2+ CDS 2279541 2279990 . - 0 ID=cds-WP_230428180.1;Parent=gene-LPH40_RS09390;Dbxref=Genbank:WP_230428180.1;Name=WP_230428180.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09390;product=hypothetical protein;protein_id=WP_230428180.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2280009 2280650 . - . ID=gene-LPH40_RS09395;Name=LPH40_RS09395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09395;old_locus_tag=LPH40_09395 NZ_CP087685.1 Protein Homology CDS 2280009 2280650 . - 0 ID=cds-WP_038270687.1;Parent=gene-LPH40_RS09395;Dbxref=Genbank:WP_038270687.1;Name=WP_038270687.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017673.2;locus_tag=LPH40_RS09395;product=phage terminase large subunit family protein;protein_id=WP_038270687.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2280634 2280840 . - . ID=gene-LPH40_RS09400;Name=LPH40_RS09400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09400;old_locus_tag=LPH40_09400 NZ_CP087685.1 Protein Homology CDS 2280634 2280840 . - 0 ID=cds-WP_038270689.1;Parent=gene-LPH40_RS09400;Dbxref=Genbank:WP_038270689.1;Name=WP_038270689.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017673.2;locus_tag=LPH40_RS09400;product=phage terminase large subunit family protein;protein_id=WP_038270689.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2281278 2281583 . + . ID=gene-LPH40_RS09405;Name=LPH40_RS09405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09405;old_locus_tag=LPH40_09405 NZ_CP087685.1 GeneMarkS-2+ CDS 2281278 2281583 . + 0 ID=cds-WP_051482274.1;Parent=gene-LPH40_RS09405;Dbxref=Genbank:WP_051482274.1;Name=WP_051482274.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09405;product=hypothetical protein;protein_id=WP_051482274.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2281661 2281852 . + . ID=gene-LPH40_RS09410;Name=LPH40_RS09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09410;old_locus_tag=LPH40_09410 NZ_CP087685.1 GeneMarkS-2+ CDS 2281661 2281852 . + 0 ID=cds-WP_051482275.1;Parent=gene-LPH40_RS09410;Dbxref=Genbank:WP_051482275.1;Name=WP_051482275.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09410;product=hypothetical protein;protein_id=WP_051482275.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2281963 2282301 . - . ID=gene-LPH40_RS09415;Name=LPH40_RS09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09415;old_locus_tag=LPH40_09415 NZ_CP087685.1 GeneMarkS-2+ CDS 2281963 2282301 . - 0 ID=cds-WP_230430680.1;Parent=gene-LPH40_RS09415;Dbxref=Genbank:WP_230430680.1;Name=WP_230430680.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09415;product=hypothetical protein;protein_id=WP_230430680.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2282915 2283247 . + . ID=gene-LPH40_RS09420;Name=LPH40_RS09420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09420;old_locus_tag=LPH40_09420 NZ_CP087685.1 Protein Homology CDS 2282915 2283247 . + 0 ID=cds-WP_038270693.1;Parent=gene-LPH40_RS09420;Dbxref=Genbank:WP_038270693.1;Name=WP_038270693.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852216.1;locus_tag=LPH40_RS09420;product=hypothetical protein;protein_id=WP_038270693.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2283251 2284078 . + . ID=gene-LPH40_RS09425;Name=LPH40_RS09425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09425;old_locus_tag=LPH40_09425 NZ_CP087685.1 Protein Homology CDS 2283251 2284078 . + 0 ID=cds-WP_038270695.1;Parent=gene-LPH40_RS09425;Dbxref=Genbank:WP_038270695.1;Name=WP_038270695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852217.1;locus_tag=LPH40_RS09425;product=DUF2303 family protein;protein_id=WP_038270695.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2284235 2284636 . + . ID=gene-LPH40_RS09430;Name=LPH40_RS09430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09430;old_locus_tag=LPH40_09430 NZ_CP087685.1 GeneMarkS-2+ CDS 2284235 2284636 . + 0 ID=cds-WP_160165148.1;Parent=gene-LPH40_RS09430;Dbxref=Genbank:WP_160165148.1;Name=WP_160165148.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09430;product=PD-(D/E)XK nuclease-like domain-containing protein;protein_id=WP_160165148.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2284640 2284984 . + . ID=gene-LPH40_RS09435;Name=LPH40_RS09435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09435;old_locus_tag=LPH40_09435 NZ_CP087685.1 Protein Homology CDS 2284640 2284984 . + 0 ID=cds-WP_038270697.1;Parent=gene-LPH40_RS09435;Dbxref=Genbank:WP_038270697.1;Name=WP_038270697.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024096.2;locus_tag=LPH40_RS09435;product=PD-(D/E)XK nuclease-like domain-containing protein;protein_id=WP_038270697.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2284994 2285566 . + . ID=gene-LPH40_RS09440;Name=LPH40_RS09440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09440;old_locus_tag=LPH40_09440 NZ_CP087685.1 GeneMarkS-2+ CDS 2284994 2285566 . + 0 ID=cds-WP_051482276.1;Parent=gene-LPH40_RS09440;Dbxref=Genbank:WP_051482276.1;Name=WP_051482276.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09440;product=hypothetical protein;protein_id=WP_051482276.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2286220 2287146 . - . ID=gene-LPH40_RS09445;Name=LPH40_RS09445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09445;old_locus_tag=LPH40_09445 NZ_CP087685.1 Protein Homology CDS 2286220 2287146 . - 0 ID=cds-WP_038270698.1;Parent=gene-LPH40_RS09445;Dbxref=Genbank:WP_038270698.1;Name=WP_038270698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484402.1;locus_tag=LPH40_RS09445;product=lauroyl acyltransferase;protein_id=WP_038270698.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2287544 2289409 . + . ID=gene-LPH40_RS09450;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=LPH40_RS09450;old_locus_tag=LPH40_09450 NZ_CP087685.1 Protein Homology CDS 2287544 2289409 . + 0 ID=cds-WP_038270699.1;Parent=gene-LPH40_RS09450;Dbxref=Genbank:WP_038270699.1;Name=WP_038270699.1;Ontology_term=GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoD;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157069.1;locus_tag=LPH40_RS09450;product=RNA polymerase sigma factor RpoD;protein_id=WP_038270699.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2290019 2290210 . + . ID=gene-LPH40_RS09455;Name=LPH40_RS09455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09455;old_locus_tag=LPH40_09455 NZ_CP087685.1 GeneMarkS-2+ CDS 2290019 2290210 . + 0 ID=cds-WP_038270700.1;Parent=gene-LPH40_RS09455;Dbxref=Genbank:WP_038270700.1;Name=WP_038270700.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09455;product=hypothetical protein;protein_id=WP_038270700.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2292209 2294458 . - . ID=gene-LPH40_RS09460;Name=parC;gbkey=Gene;gene=parC;gene_biotype=protein_coding;locus_tag=LPH40_RS09460;old_locus_tag=LPH40_09460 NZ_CP087685.1 Protein Homology CDS 2292209 2294458 . - 0 ID=cds-WP_038272689.1;Parent=gene-LPH40_RS09460;Dbxref=Genbank:WP_038272689.1;Name=WP_038272689.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parC;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483492.1;locus_tag=LPH40_RS09460;product=DNA topoisomerase IV subunit A;protein_id=WP_038272689.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2294856 2295287 . + . ID=gene-LPH40_RS09465;Name=LPH40_RS09465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09465;old_locus_tag=LPH40_09465 NZ_CP087685.1 Protein Homology CDS 2294856 2295287 . + 0 ID=cds-WP_038272687.1;Parent=gene-LPH40_RS09465;Dbxref=Genbank:WP_038272687.1;Name=WP_038272687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893858.1;locus_tag=LPH40_RS09465;product=MarR family transcriptional regulator;protein_id=WP_038272687.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2295284 2296774 . + . ID=gene-LPH40_RS09470;Name=LPH40_RS09470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09470;old_locus_tag=LPH40_09470 NZ_CP087685.1 Protein Homology CDS 2295284 2296774 . + 0 ID=cds-WP_038272685.1;Parent=gene-LPH40_RS09470;Dbxref=Genbank:WP_038272685.1;Name=WP_038272685.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810731.1;locus_tag=LPH40_RS09470;product=efflux transporter outer membrane subunit;protein_id=WP_038272685.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2296785 2297963 . + . ID=gene-LPH40_RS09475;Name=LPH40_RS09475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09475;old_locus_tag=LPH40_09475 NZ_CP087685.1 Protein Homology CDS 2296785 2297963 . + 0 ID=cds-WP_038272696.1;Parent=gene-LPH40_RS09475;Dbxref=Genbank:WP_038272696.1;Name=WP_038272696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005408768.1;locus_tag=LPH40_RS09475;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_038272696.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2297973 2299538 . + . ID=gene-LPH40_RS09480;Name=LPH40_RS09480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09480;old_locus_tag=LPH40_09480 NZ_CP087685.1 Protein Homology CDS 2297973 2299538 . + 0 ID=cds-WP_051482376.1;Parent=gene-LPH40_RS09480;Dbxref=Genbank:WP_051482376.1;Name=WP_051482376.1;Ontology_term=GO:0006855,GO:0009410,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_process=xenobiotic transmembrane transport|0006855||IEA,response to xenobiotic stimulus|0009410||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012510532.1;locus_tag=LPH40_RS09480;product=DHA2 family efflux MFS transporter permease subunit;protein_id=WP_051482376.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2300239 2301006 . - . ID=gene-LPH40_RS09485;Name=bioH;gbkey=Gene;gene=bioH;gene_biotype=protein_coding;locus_tag=LPH40_RS09485;old_locus_tag=LPH40_09485 NZ_CP087685.1 Protein Homology CDS 2300239 2301006 . - 0 ID=cds-WP_038272683.1;Parent=gene-LPH40_RS09485;Dbxref=Genbank:WP_038272683.1;Name=WP_038272683.1;Ontology_term=GO:0009102,GO:0003824;gbkey=CDS;gene=bioH;go_function=catalytic activity|0003824||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968482.1;locus_tag=LPH40_RS09485;product=pimeloyl-ACP methyl ester esterase BioH;protein_id=WP_038272683.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2301162 2302367 . - . ID=gene-LPH40_RS09490;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;locus_tag=LPH40_RS09490;old_locus_tag=LPH40_09490 NZ_CP087685.1 Protein Homology CDS 2301162 2302367 . - 0 ID=cds-WP_038272681.1;Parent=gene-LPH40_RS09490;Dbxref=Genbank:WP_038272681.1;Name=WP_038272681.1;Ontology_term=GO:0009102,GO:0008710;gbkey=CDS;gene=bioF;go_function=8-amino-7-oxononanoate synthase activity|0008710||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090644.1;locus_tag=LPH40_RS09490;product=8-amino-7-oxononanoate synthase;protein_id=WP_038272681.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2303247 2304410 . + . ID=gene-LPH40_RS09495;Name=LPH40_RS09495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09495;old_locus_tag=LPH40_09495 NZ_CP087685.1 Protein Homology CDS 2303247 2304410 . + 0 ID=cds-WP_038272676.1;Parent=gene-LPH40_RS09495;Dbxref=Genbank:WP_038272676.1;Name=WP_038272676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238044.1;locus_tag=LPH40_RS09495;product=heme A synthase;protein_id=WP_038272676.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2304413 2305312 . + . ID=gene-LPH40_RS09500;Name=cyoE;gbkey=Gene;gene=cyoE;gene_biotype=protein_coding;locus_tag=LPH40_RS09500;old_locus_tag=LPH40_09500 NZ_CP087685.1 Protein Homology CDS 2304413 2305312 . + 0 ID=cds-WP_038272675.1;Parent=gene-LPH40_RS09500;Dbxref=Genbank:WP_038272675.1;Name=WP_038272675.1;Ontology_term=GO:0006783,GO:0008495;gbkey=CDS;gene=cyoE;go_function=protoheme IX farnesyltransferase activity|0008495||IEA;go_process=heme biosynthetic process|0006783||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851978.1;locus_tag=LPH40_RS09500;product=heme o synthase;protein_id=WP_038272675.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2306252 2307091 . + . ID=gene-LPH40_RS09505;Name=LPH40_RS09505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09505;old_locus_tag=LPH40_09505 NZ_CP087685.1 Protein Homology CDS 2306252 2307091 . + 0 ID=cds-WP_051482375.1;Parent=gene-LPH40_RS09505;Dbxref=Genbank:WP_051482375.1;Name=WP_051482375.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851979.1;locus_tag=LPH40_RS09505;product=N-acyl homoserine lactonase family protein;protein_id=WP_051482375.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2307599 2308849 . - . ID=gene-LPH40_RS09510;Name=LPH40_RS09510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09510;old_locus_tag=LPH40_09510 NZ_CP087685.1 Protein Homology CDS 2307599 2308849 . - 0 ID=cds-WP_038272671.1;Parent=gene-LPH40_RS09510;Dbxref=Genbank:WP_038272671.1;Name=WP_038272671.1;Ontology_term=GO:0001680,GO:0003723,GO:0004810,GO:0005524;gbkey=CDS;go_function=RNA binding|0003723||IEA,CCA tRNA nucleotidyltransferase|0004810||IEA,ATP binding|0005524||IEA;go_process=tRNA 3'-terminal CCA addition|0001680||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851980.1;locus_tag=LPH40_RS09510;product=multifunctional CCA addition/repair protein;protein_id=WP_038272671.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2308933 2310876 . - . ID=gene-LPH40_RS09515;Name=LPH40_RS09515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09515;old_locus_tag=LPH40_09515 NZ_CP087685.1 Protein Homology CDS 2308933 2310876 . - 0 ID=cds-WP_038272670.1;Parent=gene-LPH40_RS09515;Dbxref=Genbank:WP_038272670.1;Name=WP_038272670.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090648.1;locus_tag=LPH40_RS09515;product=lytic transglycosylase domain-containing protein;protein_id=WP_038272670.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2312204 2312626 . - . ID=gene-LPH40_RS09520;Name=LPH40_RS09520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09520;old_locus_tag=LPH40_09520 NZ_CP087685.1 Protein Homology CDS 2312204 2312626 . - 0 ID=cds-WP_038272666.1;Parent=gene-LPH40_RS09520;Dbxref=Genbank:WP_038272666.1;Name=WP_038272666.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018974490.1;locus_tag=LPH40_RS09520;product=cupin domain-containing protein;protein_id=WP_038272666.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2314282 2315124 . - . ID=gene-LPH40_RS09525;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=LPH40_RS09525;old_locus_tag=LPH40_09525 NZ_CP087685.1 Protein Homology CDS 2314282 2315124 . - 0 ID=cds-WP_114867088.1;Parent=gene-LPH40_RS09525;Dbxref=Genbank:WP_114867088.1;Name=WP_114867088.1;Note=Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein.;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=asd;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097716.1;locus_tag=LPH40_RS09525;product=archaetidylserine decarboxylase;protein_id=WP_114867088.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2315121 2315312 . - . ID=gene-LPH40_RS09530;Name=LPH40_RS09530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09530;old_locus_tag=LPH40_09530 NZ_CP087685.1 GeneMarkS-2+ CDS 2315121 2315312 . - 0 ID=cds-WP_114867089.1;Parent=gene-LPH40_RS09530;Dbxref=Genbank:WP_114867089.1;Name=WP_114867089.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09530;product=hypothetical protein;protein_id=WP_114867089.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2315393 2315841 . - . ID=gene-LPH40_RS09535;Name=LPH40_RS09535;end_range=2315841,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS09535;old_locus_tag=LPH40_09535;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 2315393 2315841 . - 0 ID=cds-LPH40_RS09535;Parent=gene-LPH40_RS09535;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0000150,GO:0003677;end_range=2315841,.;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1;locus_tag=LPH40_RS09535;partial=true;product=recombinase family protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2315900 2316787 . - . ID=gene-LPH40_RS09540;Name=LPH40_RS09540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09540;old_locus_tag=LPH40_09540 NZ_CP087685.1 GeneMarkS-2+ CDS 2315900 2316787 . - 0 ID=cds-WP_051482328.1;Parent=gene-LPH40_RS09540;Dbxref=Genbank:WP_051482328.1;Name=WP_051482328.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09540;product=hypothetical protein;protein_id=WP_051482328.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2316796 2316942 . - . ID=gene-LPH40_RS09545;Name=LPH40_RS09545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09545;old_locus_tag=LPH40_09545 NZ_CP087685.1 GeneMarkS-2+ CDS 2316796 2316942 . - 0 ID=cds-WP_160165183.1;Parent=gene-LPH40_RS09545;Dbxref=Genbank:WP_160165183.1;Name=WP_160165183.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09545;product=hypothetical protein;protein_id=WP_160165183.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2317007 2317345 . - . ID=gene-LPH40_RS09550;Name=LPH40_RS09550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09550;old_locus_tag=LPH40_09550 NZ_CP087685.1 GeneMarkS-2+ CDS 2317007 2317345 . - 0 ID=cds-WP_160199299.1;Parent=gene-LPH40_RS09550;Dbxref=Genbank:WP_160199299.1;Name=WP_160199299.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09550;product=hypothetical protein;protein_id=WP_160199299.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2317731 2318210 . - . ID=gene-LPH40_RS09555;Name=LPH40_RS09555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09555;old_locus_tag=LPH40_09555 NZ_CP087685.1 Protein Homology CDS 2317731 2318210 . - 0 ID=cds-WP_038271387.1;Parent=gene-LPH40_RS09555;Dbxref=Genbank:WP_038271387.1;Name=WP_038271387.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024212.2;locus_tag=LPH40_RS09555;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_038271387.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2318447 2318755 . - . ID=gene-LPH40_RS09560;Name=LPH40_RS09560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09560;old_locus_tag=LPH40_09560 NZ_CP087685.1 GeneMarkS-2+ CDS 2318447 2318755 . - 0 ID=cds-WP_160165184.1;Parent=gene-LPH40_RS09560;Dbxref=Genbank:WP_160165184.1;Name=WP_160165184.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09560;product=hypothetical protein;protein_id=WP_160165184.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2319029 2319217 . + . ID=gene-LPH40_RS09565;Name=LPH40_RS09565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09565;old_locus_tag=LPH40_09565 NZ_CP087685.1 Protein Homology CDS 2319029 2319217 . + 0 ID=cds-WP_051482330.1;Parent=gene-LPH40_RS09565;Dbxref=Genbank:WP_051482330.1;Name=WP_051482330.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018180.2;locus_tag=LPH40_RS09565;product=epoxide hydrolase N-terminal domain-containing protein;protein_id=WP_051482330.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2319292 2319816 . + . ID=gene-LPH40_RS09570;Name=LPH40_RS09570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09570;old_locus_tag=LPH40_09570 NZ_CP087685.1 GeneMarkS-2+ CDS 2319292 2319816 . + 0 ID=cds-WP_152536625.1;Parent=gene-LPH40_RS09570;Dbxref=Genbank:WP_152536625.1;Name=WP_152536625.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09570;product=hypothetical protein;protein_id=WP_152536625.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2319836 2320740 . + . ID=gene-LPH40_RS09575;Name=LPH40_RS09575;end_range=2320740,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS09575;old_locus_tag=LPH40_09575;partial=true;pseudo=true;start_range=.,2319836 NZ_CP087685.1 Protein Homology CDS 2319836 2320740 . + 0 ID=cds-LPH40_RS09575;Parent=gene-LPH40_RS09575;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2320740,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083476.1;locus_tag=LPH40_RS09575;partial=true;product=calcium-binding protein;pseudo=true;start_range=.,2319836;transl_table=11 NZ_CP087685.1 RefSeq gene 2320897 2323587 . - . ID=gene-LPH40_RS09580;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=LPH40_RS09580;old_locus_tag=LPH40_09580 NZ_CP087685.1 Protein Homology CDS 2320897 2323587 . - 0 ID=cds-WP_038271391.1;Parent=gene-LPH40_RS09580;Dbxref=Genbank:WP_038271391.1;Name=WP_038271391.1;Ontology_term=GO:0006086,GO:0004738,GO:0045250;gbkey=CDS;gene=aceE;go_component=cytosolic pyruvate dehydrogenase complex|0045250||IEA;go_function=pyruvate dehydrogenase activity|0004738||IEA;go_process=acetyl-CoA biosynthetic process from pyruvate|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660853.1;locus_tag=LPH40_RS09580;product=pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type;protein_id=WP_038271391.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2327003 2327947 . + . ID=gene-LPH40_RS09585;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=LPH40_RS09585;old_locus_tag=LPH40_09585 NZ_CP087685.1 Protein Homology CDS 2327003 2327947 . + 0 ID=cds-WP_038271441.1;Parent=gene-LPH40_RS09585;Dbxref=Genbank:WP_038271441.1;Name=WP_038271441.1;Ontology_term=GO:0006633,GO:0004314;gbkey=CDS;gene=fabD;go_function=[acyl-carrier-protein] S-malonyltransferase activity|0004314||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607396.1;locus_tag=LPH40_RS09585;product=ACP S-malonyltransferase;protein_id=WP_038271441.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2328044 2328787 . + . ID=gene-LPH40_RS09590;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=LPH40_RS09590;old_locus_tag=LPH40_09590 NZ_CP087685.1 Protein Homology CDS 2328044 2328787 . + 0 ID=cds-WP_038271392.1;Parent=gene-LPH40_RS09590;Dbxref=Genbank:WP_038271392.1;Name=WP_038271392.1;Ontology_term=GO:0006633,GO:0004316,GO:0051287;gbkey=CDS;gene=fabG;go_function=3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|0004316||IEA,NAD binding|0051287||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814323.1;locus_tag=LPH40_RS09590;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_038271392.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2328954 2329193 . + . ID=gene-LPH40_RS09595;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=LPH40_RS09595;old_locus_tag=LPH40_09595 NZ_CP087685.1 Protein Homology CDS 2328954 2329193 . + 0 ID=cds-WP_004083472.1;Parent=gene-LPH40_RS09595;Dbxref=Genbank:WP_004083472.1;Name=WP_004083472.1;Ontology_term=GO:0006633;gbkey=CDS;gene=acpP;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083472.1;locus_tag=LPH40_RS09595;product=acyl carrier protein;protein_id=WP_004083472.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2329353 2330588 . + . ID=gene-LPH40_RS09600;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;locus_tag=LPH40_RS09600;old_locus_tag=LPH40_09600 NZ_CP087685.1 Protein Homology CDS 2329353 2330588 . + 0 ID=cds-WP_038271393.1;Parent=gene-LPH40_RS09600;Dbxref=Genbank:WP_038271393.1;Name=WP_038271393.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabF;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302031.1;locus_tag=LPH40_RS09600;product=beta-ketoacyl-ACP synthase II;protein_id=WP_038271393.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2330804 2332162 . + . ID=gene-LPH40_RS09605;Name=LPH40_RS09605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09605;old_locus_tag=LPH40_09605 NZ_CP087685.1 Protein Homology CDS 2330804 2332162 . + 0 ID=cds-WP_038271394.1;Parent=gene-LPH40_RS09605;Dbxref=Genbank:WP_038271394.1;Name=WP_038271394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083470.1;locus_tag=LPH40_RS09605;product=aminodeoxychorismate synthase component I;protein_id=WP_038271394.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2332276 2333322 . + . ID=gene-LPH40_RS09610;Name=mltG;gbkey=Gene;gene=mltG;gene_biotype=protein_coding;locus_tag=LPH40_RS09610;old_locus_tag=LPH40_09610 NZ_CP087685.1 Protein Homology CDS 2332276 2333322 . + 0 ID=cds-WP_038271442.1;Parent=gene-LPH40_RS09610;Dbxref=Genbank:WP_038271442.1;Name=WP_038271442.1;Ontology_term=GO:0009252,GO:0071555,GO:0008932;gbkey=CDS;gene=mltG;go_function=lytic endotransglycosylase activity|0008932||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012338004.1;locus_tag=LPH40_RS09610;product=endolytic transglycosylase MltG;protein_id=WP_038271442.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2333351 2334313 . + . ID=gene-LPH40_RS09615;Name=LPH40_RS09615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09615;old_locus_tag=LPH40_09615 NZ_CP087685.1 Protein Homology CDS 2333351 2334313 . + 0 ID=cds-WP_038271395.1;Parent=gene-LPH40_RS09615;Dbxref=Genbank:WP_038271395.1;Name=WP_038271395.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893200.1;locus_tag=LPH40_RS09615;product=DNA polymerase III subunit delta';protein_id=WP_038271395.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2334310 2334663 . + . ID=gene-LPH40_RS09620;Name=LPH40_RS09620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09620;old_locus_tag=LPH40_09620 NZ_CP087685.1 Protein Homology CDS 2334310 2334663 . + 0 ID=cds-WP_038271396.1;Parent=gene-LPH40_RS09620;Dbxref=Genbank:WP_038271396.1;Name=WP_038271396.1;Ontology_term=GO:0035438;gbkey=CDS;go_function=cyclic-di-GMP binding|0035438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155784.1;locus_tag=LPH40_RS09620;product=PilZ domain-containing protein;protein_id=WP_038271396.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2334725 2334799 . + . ID=gene-LPH40_RS09625;Name=LPH40_RS09625;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS09625;old_locus_tag=LPH40_09625 NZ_CP087685.1 tRNAscan-SE tRNA 2334725 2334799 . + . ID=rna-LPH40_RS09625;Parent=gene-LPH40_RS09625;anticodon=(pos:2334757..2334759);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS09625;product=tRNA-Val NZ_CP087685.1 tRNAscan-SE exon 2334725 2334799 . + . ID=exon-LPH40_RS09625-1;Parent=rna-LPH40_RS09625;anticodon=(pos:2334757..2334759);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS09625;product=tRNA-Val NZ_CP087685.1 RefSeq gene 2336079 2336756 . - . ID=gene-LPH40_RS09630;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=LPH40_RS09630;old_locus_tag=LPH40_09630 NZ_CP087685.1 Protein Homology CDS 2336079 2336756 . - 0 ID=cds-WP_038271397.1;Parent=gene-LPH40_RS09630;Dbxref=Genbank:WP_038271397.1;Name=WP_038271397.1;Ontology_term=GO:0009102,GO:0004141;gbkey=CDS;gene=bioD;go_function=dethiobiotin synthase activity|0004141||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851492.1;locus_tag=LPH40_RS09630;product=dethiobiotin synthase;protein_id=WP_038271397.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2338465 2339292 . - . ID=gene-LPH40_RS09635;Name=LPH40_RS09635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09635;old_locus_tag=LPH40_09635 NZ_CP087685.1 Protein Homology CDS 2338465 2339292 . - 0 ID=cds-WP_038271399.1;Parent=gene-LPH40_RS09635;Dbxref=Genbank:WP_038271399.1;Name=WP_038271399.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088505.1;locus_tag=LPH40_RS09635;product=inositol monophosphatase family protein;protein_id=WP_038271399.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2339412 2340170 . + . ID=gene-LPH40_RS09640;Name=LPH40_RS09640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09640;old_locus_tag=LPH40_09640 NZ_CP087685.1 Protein Homology CDS 2339412 2340170 . + 0 ID=cds-WP_038271443.1;Parent=gene-LPH40_RS09640;Dbxref=Genbank:WP_038271443.1;Name=WP_038271443.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088504.1;locus_tag=LPH40_RS09640;product=RNA methyltransferase;protein_id=WP_038271443.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2340420 2341448 . - . ID=gene-LPH40_RS09645;Name=epmB;gbkey=Gene;gene=epmB;gene_biotype=protein_coding;locus_tag=LPH40_RS09645;old_locus_tag=LPH40_09645 NZ_CP087685.1 Protein Homology CDS 2340420 2341448 . - 0 ID=cds-WP_038271400.1;Parent=gene-LPH40_RS09645;Dbxref=Genbank:WP_038271400.1;Name=WP_038271400.1;Ontology_term=GO:0072581;gbkey=CDS;gene=epmB;go_process=protein-N6-(L-lysyl)-L-lysine modification to protein-N6-(beta-lysyl)-L-lysine|0072581||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408738.1;locus_tag=LPH40_RS09645;product=EF-P beta-lysylation protein EpmB;protein_id=WP_038271400.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2341551 2342117 . + . ID=gene-LPH40_RS09650;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=LPH40_RS09650;old_locus_tag=LPH40_09650 NZ_CP087685.1 Protein Homology CDS 2341551 2342117 . + 0 ID=cds-WP_038271401.1;Parent=gene-LPH40_RS09650;Dbxref=Genbank:WP_038271401.1;Name=WP_038271401.1;Ontology_term=GO:0006414,GO:0003746,GO:0005737;gbkey=CDS;gene=efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301003.1;locus_tag=LPH40_RS09650;product=elongation factor P;protein_id=WP_038271401.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2342255 2343598 . + . ID=gene-LPH40_RS09655;Name=LPH40_RS09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09655;old_locus_tag=LPH40_09655 NZ_CP087685.1 Protein Homology CDS 2342255 2343598 . + 0 ID=cds-WP_038271402.1;Parent=gene-LPH40_RS09655;Dbxref=Genbank:WP_038271402.1;Name=WP_038271402.1;Ontology_term=GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159956.1;locus_tag=LPH40_RS09655;product=TRZ/ATZ family hydrolase;protein_id=WP_038271402.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2343629 2344366 . + . ID=gene-LPH40_RS09660;Name=ubiG;gbkey=Gene;gene=ubiG;gene_biotype=protein_coding;locus_tag=LPH40_RS09660;old_locus_tag=LPH40_09660 NZ_CP087685.1 Protein Homology CDS 2343629 2344366 . + 0 ID=cds-WP_038271403.1;Parent=gene-LPH40_RS09660;Dbxref=Genbank:WP_038271403.1;Name=WP_038271403.1;Ontology_term=GO:0006744,GO:0008689;gbkey=CDS;gene=ubiG;go_function=3-demethylubiquinone-9 3-O-methyltransferase activity|0008689||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851498.1;locus_tag=LPH40_RS09660;product=bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG;protein_id=WP_038271403.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2344356 2345045 . + . ID=gene-LPH40_RS09665;Name=LPH40_RS09665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09665;old_locus_tag=LPH40_09665 NZ_CP087685.1 Protein Homology CDS 2344356 2345045 . + 0 ID=cds-WP_038271404.1;Parent=gene-LPH40_RS09665;Dbxref=Genbank:WP_038271404.1;Name=WP_038271404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894913.1;locus_tag=LPH40_RS09665;product=phosphoglycolate phosphatase;protein_id=WP_038271404.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2345070 2345759 . + . ID=gene-LPH40_RS09670;Name=LPH40_RS09670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09670;old_locus_tag=LPH40_09670 NZ_CP087685.1 Protein Homology CDS 2345070 2345759 . + 0 ID=cds-WP_038271405.1;Parent=gene-LPH40_RS09670;Dbxref=Genbank:WP_038271405.1;Name=WP_038271405.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156122.1;locus_tag=LPH40_RS09670;product=phytoene synthase;protein_id=WP_038271405.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2345766 2345927 . + . ID=gene-LPH40_RS09675;Name=LPH40_RS09675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09675;old_locus_tag=LPH40_09675 NZ_CP087685.1 GeneMarkS-2+ CDS 2345766 2345927 . + 0 ID=cds-WP_160165185.1;Parent=gene-LPH40_RS09675;Dbxref=Genbank:WP_160165185.1;Name=WP_160165185.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09675;product=hypothetical protein;protein_id=WP_160165185.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2346252 2347364 . - . ID=gene-LPH40_RS09680;Name=LPH40_RS09680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09680;old_locus_tag=LPH40_09680 NZ_CP087685.1 Protein Homology CDS 2346252 2347364 . - 0 ID=cds-WP_038271406.1;Parent=gene-LPH40_RS09680;Dbxref=Genbank:WP_038271406.1;Name=WP_038271406.1;Ontology_term=GO:0009058,GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088494.1;locus_tag=LPH40_RS09680;product=homoserine O-acetyltransferase;protein_id=WP_038271406.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2348004 2348603 . - . ID=gene-LPH40_RS09685;Name=LPH40_RS09685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09685;old_locus_tag=LPH40_09685 NZ_CP087685.1 Protein Homology CDS 2348004 2348603 . - 0 ID=cds-WP_038271407.1;Parent=gene-LPH40_RS09685;Dbxref=Genbank:WP_038271407.1;Name=WP_038271407.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086014.1;locus_tag=LPH40_RS09685;product=DsbE family thiol:disulfide interchange protein;protein_id=WP_038271407.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2348596 2349561 . - . ID=gene-LPH40_RS09690;Name=LPH40_RS09690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09690;old_locus_tag=LPH40_09690 NZ_CP087685.1 Protein Homology CDS 2348596 2349561 . - 0 ID=cds-WP_230428501.1;Parent=gene-LPH40_RS09690;Dbxref=Genbank:WP_230428501.1;Name=WP_230428501.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027651.2;locus_tag=LPH40_RS09690;product=hypothetical protein;protein_id=WP_230428501.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2350438 2350823 . - . ID=gene-LPH40_RS09695;Name=LPH40_RS09695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS09695;old_locus_tag=LPH40_09695;pseudo=true NZ_CP087685.1 Protein Homology CDS 2350438 2350823 . - 0 ID=cds-LPH40_RS09695;Parent=gene-LPH40_RS09695;Note=frameshifted%3B internal stop;Ontology_term=GO:0017003,GO:0017004,GO:0020037;gbkey=CDS;go_function=heme binding|0020037||IEA;go_process=protein-heme linkage|0017003||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851508.1;locus_tag=LPH40_RS09695;product=cytochrome c maturation protein CcmE;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2350876 2351052 . - . ID=gene-LPH40_RS09700;Name=ccmD;gbkey=Gene;gene=ccmD;gene_biotype=protein_coding;locus_tag=LPH40_RS09700;old_locus_tag=LPH40_09700 NZ_CP087685.1 Protein Homology CDS 2350876 2351052 . - 0 ID=cds-WP_069636214.1;Parent=gene-LPH40_RS09700;Dbxref=Genbank:WP_069636214.1;Name=WP_069636214.1;Ontology_term=GO:0015886,GO:0017004,GO:0016020;gbkey=CDS;gene=ccmD;go_component=membrane|0016020||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382686.1;locus_tag=LPH40_RS09700;product=heme exporter protein CcmD;protein_id=WP_069636214.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2351052 2351186 . - . ID=gene-LPH40_RS12045;Name=LPH40_RS12045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS12045 NZ_CP087685.1 GeneMarkS-2+ CDS 2351052 2351186 . - 0 ID=cds-WP_267903175.1;Parent=gene-LPH40_RS12045;Dbxref=Genbank:WP_267903175.1;Name=WP_267903175.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS12045;product=hypothetical protein;protein_id=WP_267903175.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2351428 2352026 . - . ID=gene-LPH40_RS09705;Name=LPH40_RS09705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS09705;old_locus_tag=LPH40_09705;pseudo=true NZ_CP087685.1 Protein Homology CDS 2351428 2352026 . - 0 ID=cds-LPH40_RS09705;Parent=gene-LPH40_RS09705;Note=frameshifted%3B internal stop;Ontology_term=GO:0015886,GO:0017004,GO:0015232,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003473242.1;locus_tag=LPH40_RS09705;product=heme exporter protein CcmB;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2352143 2352762 . - . ID=gene-LPH40_RS09710;Name=ccmA;gbkey=Gene;gene=ccmA;gene_biotype=pseudogene;locus_tag=LPH40_RS09710;old_locus_tag=LPH40_09710;pseudo=true NZ_CP087685.1 Protein Homology CDS 2352143 2352762 . - 0 ID=cds-LPH40_RS09710;Parent=gene-LPH40_RS09710;Note=frameshifted;Ontology_term=GO:0015886,GO:0015439,GO:0043190;gbkey=CDS;gene=ccmA;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type heme transporter activity|0015439||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088477.1;locus_tag=LPH40_RS09710;product=heme ABC exporter ATP-binding protein CcmA;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2352931 2354079 . + . ID=gene-LPH40_RS09715;Name=LPH40_RS09715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09715;old_locus_tag=LPH40_09715 NZ_CP087685.1 Protein Homology CDS 2352931 2354079 . + 0 ID=cds-WP_038271408.1;Parent=gene-LPH40_RS09715;Dbxref=Genbank:WP_038271408.1;Name=WP_038271408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964632.1;locus_tag=LPH40_RS09715;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_038271408.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2354093 2354908 . + . ID=gene-LPH40_RS09720;Name=LPH40_RS09720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09720;old_locus_tag=LPH40_09720 NZ_CP087685.1 Protein Homology CDS 2354093 2354908 . + 0 ID=cds-WP_038271409.1;Parent=gene-LPH40_RS09720;Dbxref=Genbank:WP_038271409.1;Name=WP_038271409.1;Ontology_term=GO:0006807;gbkey=CDS;go_process=nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088475.1;locus_tag=LPH40_RS09720;product=amidohydrolase;protein_id=WP_038271409.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2354998 2355435 . + . ID=gene-LPH40_RS09725;Name=LPH40_RS09725;end_range=2355435,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS09725;old_locus_tag=LPH40_09725;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 2354998 2355435 . + 0 ID=cds-LPH40_RS09725;Parent=gene-LPH40_RS09725;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2355435,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003474141.1;locus_tag=LPH40_RS09725;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2355883 2357301 . - . ID=gene-LPH40_RS09730;Name=LPH40_RS09730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09730;old_locus_tag=LPH40_09730 NZ_CP087685.1 Protein Homology CDS 2355883 2357301 . - 0 ID=cds-WP_038271410.1;Parent=gene-LPH40_RS09730;Dbxref=Genbank:WP_038271410.1;Name=WP_038271410.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088470.1;locus_tag=LPH40_RS09730;product=pseudouridine synthase;protein_id=WP_038271410.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2357298 2358275 . - . ID=gene-LPH40_RS09735;Name=scpB;gbkey=Gene;gene=scpB;gene_biotype=protein_coding;locus_tag=LPH40_RS09735;old_locus_tag=LPH40_09735 NZ_CP087685.1 Protein Homology CDS 2357298 2358275 . - 0 ID=cds-WP_038271447.1;Parent=gene-LPH40_RS09735;Dbxref=Genbank:WP_038271447.1;Name=WP_038271447.1;Ontology_term=GO:0007059,GO:0005515;gbkey=CDS;gene=scpB;go_function=protein binding|0005515||IEA;go_process=chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037358.1;locus_tag=LPH40_RS09735;product=SMC-Scp complex subunit ScpB;protein_id=WP_038271447.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2358289 2359200 . - . ID=gene-LPH40_RS09740;Name=LPH40_RS09740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09740;old_locus_tag=LPH40_09740 NZ_CP087685.1 Protein Homology CDS 2358289 2359200 . - 0 ID=cds-WP_038271411.1;Parent=gene-LPH40_RS09740;Dbxref=Genbank:WP_038271411.1;Name=WP_038271411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086003.1;locus_tag=LPH40_RS09740;product=ScpA family protein;protein_id=WP_038271411.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2359560 2359847 . + . ID=gene-LPH40_RS09745;Name=LPH40_RS09745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09745;old_locus_tag=LPH40_09745 NZ_CP087685.1 GeneMarkS-2+ CDS 2359560 2359847 . + 0 ID=cds-WP_051482334.1;Parent=gene-LPH40_RS09745;Dbxref=Genbank:WP_051482334.1;Name=WP_051482334.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09745;product=hypothetical protein;protein_id=WP_051482334.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2359844 2360116 . + . ID=gene-LPH40_RS09750;Name=LPH40_RS09750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09750;old_locus_tag=LPH40_09750 NZ_CP087685.1 Protein Homology CDS 2359844 2360116 . + 0 ID=cds-WP_038271449.1;Parent=gene-LPH40_RS09750;Dbxref=Genbank:WP_038271449.1;Name=WP_038271449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904540.1;locus_tag=LPH40_RS09750;product=BolA family transcriptional regulator;protein_id=WP_038271449.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2360103 2360288 . + . ID=gene-LPH40_RS09755;Name=LPH40_RS09755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09755;old_locus_tag=LPH40_09755 NZ_CP087685.1 GeneMarkS-2+ CDS 2360103 2360288 . + 0 ID=cds-WP_230428183.1;Parent=gene-LPH40_RS09755;Dbxref=Genbank:WP_230428183.1;Name=WP_230428183.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09755;product=hypothetical protein;protein_id=WP_230428183.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2360714 2362315 . + . ID=gene-LPH40_RS09760;Name=LPH40_RS09760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09760;old_locus_tag=LPH40_09760 NZ_CP087685.1 Protein Homology CDS 2360714 2362315 . + 0 ID=cds-WP_038271453.1;Parent=gene-LPH40_RS09760;Dbxref=Genbank:WP_038271453.1;Name=WP_038271453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894893.1;locus_tag=LPH40_RS09760;product=hypothetical protein;protein_id=WP_038271453.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2362364 2363611 . + . ID=gene-LPH40_RS09765;Name=LPH40_RS09765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09765;old_locus_tag=LPH40_09765 NZ_CP087685.1 Protein Homology CDS 2362364 2363611 . + 0 ID=cds-WP_051482335.1;Parent=gene-LPH40_RS09765;Dbxref=Genbank:WP_051482335.1;Name=WP_051482335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852884.1;locus_tag=LPH40_RS09765;product=sugar ABC transporter substrate-binding protein;protein_id=WP_051482335.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2363608 2364489 . + . ID=gene-LPH40_RS09770;Name=LPH40_RS09770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09770;old_locus_tag=LPH40_09770 NZ_CP087685.1 Protein Homology CDS 2363608 2364489 . + 0 ID=cds-WP_038271413.1;Parent=gene-LPH40_RS09770;Dbxref=Genbank:WP_038271413.1;Name=WP_038271413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489669.1;locus_tag=LPH40_RS09770;product=sugar ABC transporter permease;protein_id=WP_038271413.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2364486 2365322 . + . ID=gene-LPH40_RS09775;Name=LPH40_RS09775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09775;old_locus_tag=LPH40_09775 NZ_CP087685.1 Protein Homology CDS 2364486 2365322 . + 0 ID=cds-WP_038271414.1;Parent=gene-LPH40_RS09775;Dbxref=Genbank:WP_038271414.1;Name=WP_038271414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017357393.1;locus_tag=LPH40_RS09775;product=carbohydrate ABC transporter permease;protein_id=WP_038271414.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2365328 2368492 . + . ID=gene-LPH40_RS09780;Name=LPH40_RS09780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09780;old_locus_tag=LPH40_09780 NZ_CP087685.1 Protein Homology CDS 2365328 2368492 . + 0 ID=cds-WP_038271415.1;Parent=gene-LPH40_RS09780;Dbxref=Genbank:WP_038271415.1;Name=WP_038271415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852202.1;locus_tag=LPH40_RS09780;product=discoidin domain-containing protein;protein_id=WP_038271415.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2368817 2370031 . - . ID=gene-LPH40_RS09785;Name=LPH40_RS09785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09785;old_locus_tag=LPH40_09785 NZ_CP087685.1 Protein Homology CDS 2368817 2370031 . - 0 ID=cds-WP_171898074.1;Parent=gene-LPH40_RS09785;Dbxref=Genbank:WP_171898074.1;Name=WP_171898074.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894888.1;locus_tag=LPH40_RS09785;product=TraB/GumN family protein;protein_id=WP_171898074.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2370159 2371046 . - . ID=gene-LPH40_RS09790;Name=LPH40_RS09790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09790;old_locus_tag=LPH40_09790 NZ_CP087685.1 Protein Homology CDS 2370159 2371046 . - 0 ID=cds-WP_038271417.1;Parent=gene-LPH40_RS09790;Dbxref=Genbank:WP_038271417.1;Name=WP_038271417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451810.1;locus_tag=LPH40_RS09790;product=carbon-nitrogen hydrolase;protein_id=WP_038271417.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2371128 2372183 . - . ID=gene-LPH40_RS09795;Name=LPH40_RS09795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09795;old_locus_tag=LPH40_09795 NZ_CP087685.1 Protein Homology CDS 2371128 2372183 . - 0 ID=cds-WP_038271418.1;Parent=gene-LPH40_RS09795;Dbxref=Genbank:WP_038271418.1;Name=WP_038271418.1;Ontology_term=GO:0009446,GO:0004668;gbkey=CDS;go_function=protein-arginine deiminase activity|0004668||IEA;go_process=putrescine biosynthetic process|0009446||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085983.1;locus_tag=LPH40_RS09795;product=agmatine deiminase family protein;protein_id=WP_038271418.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2372231 2372563 . - . ID=gene-LPH40_RS09800;Name=LPH40_RS09800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09800;old_locus_tag=LPH40_09800 NZ_CP087685.1 Protein Homology CDS 2372231 2372563 . - 0 ID=cds-WP_038271419.1;Parent=gene-LPH40_RS09800;Dbxref=Genbank:WP_038271419.1;Name=WP_038271419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894885.1;locus_tag=LPH40_RS09800;product=hypothetical protein;protein_id=WP_038271419.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2372736 2372861 . - . ID=gene-LPH40_RS09805;Name=ykgO;gbkey=Gene;gene=ykgO;gene_biotype=protein_coding;locus_tag=LPH40_RS09805;old_locus_tag=LPH40_09805 NZ_CP087685.1 Protein Homology CDS 2372736 2372861 . - 0 ID=cds-WP_004085979.1;Parent=gene-LPH40_RS09805;Dbxref=Genbank:WP_004085979.1;Name=WP_004085979.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=ykgO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098120.1;locus_tag=LPH40_RS09805;product=type B 50S ribosomal protein L36;protein_id=WP_004085979.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2373089 2373760 . + . ID=gene-LPH40_RS09810;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=LPH40_RS09810;old_locus_tag=LPH40_09810 NZ_CP087685.1 Protein Homology CDS 2373089 2373760 . + 0 ID=cds-WP_038271420.1;Parent=gene-LPH40_RS09810;Dbxref=Genbank:WP_038271420.1;Name=WP_038271420.1;Ontology_term=GO:0015949,GO:0004127;gbkey=CDS;gene=cmk;go_function=cytidylate kinase activity|0004127||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852197.1;locus_tag=LPH40_RS09810;product=(d)CMP kinase;protein_id=WP_038271420.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2373962 2375638 . + . ID=gene-LPH40_RS09815;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=LPH40_RS09815;old_locus_tag=LPH40_09815 NZ_CP087685.1 Protein Homology CDS 2373962 2375638 . + 0 ID=cds-WP_038271421.1;Parent=gene-LPH40_RS09815;Dbxref=Genbank:WP_038271421.1;Name=WP_038271421.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsA;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183099.1;locus_tag=LPH40_RS09815;product=30S ribosomal protein S1;protein_id=WP_038271421.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2375740 2376054 . + . ID=gene-LPH40_RS09820;Name=LPH40_RS09820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09820;old_locus_tag=LPH40_09820 NZ_CP087685.1 Protein Homology CDS 2375740 2376054 . + 0 ID=cds-WP_038271422.1;Parent=gene-LPH40_RS09820;Dbxref=Genbank:WP_038271422.1;Name=WP_038271422.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677,GO:0005694;gbkey=CDS;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088432.1;locus_tag=LPH40_RS09820;product=integration host factor subunit beta;protein_id=WP_038271422.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2376104 2376400 . + . ID=gene-LPH40_RS09825;Name=LPH40_RS09825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09825;old_locus_tag=LPH40_09825 NZ_CP087685.1 Protein Homology CDS 2376104 2376400 . + 0 ID=cds-WP_038271423.1;Parent=gene-LPH40_RS09825;Dbxref=Genbank:WP_038271423.1;Name=WP_038271423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088430.1;locus_tag=LPH40_RS09825;product=LapA family protein;protein_id=WP_038271423.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2376405 2377583 . + . ID=gene-LPH40_RS09830;Name=lapB;gbkey=Gene;gene=lapB;gene_biotype=protein_coding;locus_tag=LPH40_RS09830;old_locus_tag=LPH40_09830 NZ_CP087685.1 Protein Homology CDS 2376405 2377583 . + 0 ID=cds-WP_038271424.1;Parent=gene-LPH40_RS09830;Dbxref=Genbank:WP_038271424.1;Name=WP_038271424.1;gbkey=CDS;gene=lapB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003468665.1;locus_tag=LPH40_RS09830;product=lipopolysaccharide assembly protein LapB;protein_id=WP_038271424.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2377583 2378560 . + . ID=gene-LPH40_RS09835;Name=LPH40_RS09835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09835;old_locus_tag=LPH40_09835 NZ_CP087685.1 Protein Homology CDS 2377583 2378560 . + 0 ID=cds-WP_081755449.1;Parent=gene-LPH40_RS09835;Dbxref=Genbank:WP_081755449.1;Name=WP_081755449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851517.1;locus_tag=LPH40_RS09835;product=lipopolysaccharide biosynthesis protein;protein_id=WP_081755449.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2378573 2380480 . + . ID=gene-LPH40_RS09840;Name=LPH40_RS09840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09840;old_locus_tag=LPH40_09840 NZ_CP087685.1 Protein Homology CDS 2378573 2380480 . + 0 ID=cds-WP_038271425.1;Parent=gene-LPH40_RS09840;Dbxref=Genbank:WP_038271425.1;Name=WP_038271425.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300130.1;locus_tag=LPH40_RS09840;product=nucleoside-diphosphate sugar epimerase/dehydratase;protein_id=WP_038271425.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2380480 2381370 . + . ID=gene-LPH40_RS09845;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=LPH40_RS09845;old_locus_tag=LPH40_09845 NZ_CP087685.1 Protein Homology CDS 2380480 2381370 . + 0 ID=cds-WP_038271426.1;Parent=gene-LPH40_RS09845;Dbxref=Genbank:WP_038271426.1;Name=WP_038271426.1;Ontology_term=GO:0009225,GO:0003983;gbkey=CDS;gene=galU;go_function=UTP:glucose-1-phosphate uridylyltransferase activity|0003983||IEA;go_process=nucleotide-sugar metabolic process|0009225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894877.1;locus_tag=LPH40_RS09845;product=UTP--glucose-1-phosphate uridylyltransferase GalU;protein_id=WP_038271426.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2381584 2382468 . + . ID=gene-LPH40_RS09850;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;locus_tag=LPH40_RS09850;old_locus_tag=LPH40_09850 NZ_CP087685.1 Protein Homology CDS 2381584 2382468 . + 0 ID=cds-WP_114867092.1;Parent=gene-LPH40_RS09850;Dbxref=Genbank:WP_114867092.1;Name=WP_114867092.1;Ontology_term=GO:0004488;gbkey=CDS;gene=folD;go_function=methylenetetrahydrofolate dehydrogenase (NADP+) activity|0004488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451188.1;locus_tag=LPH40_RS09850;product=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD;protein_id=WP_114867092.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2382585 2384042 . + . ID=gene-LPH40_RS09855;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;locus_tag=LPH40_RS09855;old_locus_tag=LPH40_09855 NZ_CP087685.1 Protein Homology CDS 2382585 2384042 . + 0 ID=cds-WP_038271428.1;Parent=gene-LPH40_RS09855;Dbxref=Genbank:WP_038271428.1;Name=WP_038271428.1;Ontology_term=GO:0009152,GO:0003938;gbkey=CDS;gene=guaB;go_function=IMP dehydrogenase activity|0003938||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851520.1;locus_tag=LPH40_RS09855;product=IMP dehydrogenase;protein_id=WP_038271428.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2384241 2385809 . + . ID=gene-LPH40_RS09860;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=LPH40_RS09860;old_locus_tag=LPH40_09860 NZ_CP087685.1 Protein Homology CDS 2384241 2385809 . + 0 ID=cds-WP_038271429.1;Parent=gene-LPH40_RS09860;Dbxref=Genbank:WP_038271429.1;Name=WP_038271429.1;Ontology_term=GO:0006177,GO:0003922,GO:0005524,GO:0016462;gbkey=CDS;gene=guaA;go_function=GMP synthase (glutamine-hydrolyzing) activity|0003922||IEA,ATP binding|0005524||IEA,pyrophosphatase activity|0016462||IEA;go_process=GMP biosynthetic process|0006177||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012510808.1;locus_tag=LPH40_RS09860;product=glutamine-hydrolyzing GMP synthase;protein_id=WP_038271429.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2386154 2386429 . + . ID=gene-LPH40_RS09865;Name=LPH40_RS09865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09865;old_locus_tag=LPH40_09865 NZ_CP087685.1 GeneMarkS-2+ CDS 2386154 2386429 . + 0 ID=cds-WP_230428184.1;Parent=gene-LPH40_RS09865;Dbxref=Genbank:WP_230428184.1;Name=WP_230428184.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09865;product=hypothetical protein;protein_id=WP_230428184.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2386590 2386814 . + . ID=gene-LPH40_RS09870;Name=LPH40_RS09870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09870;old_locus_tag=LPH40_09870 NZ_CP087685.1 GeneMarkS-2+ CDS 2386590 2386814 . + 0 ID=cds-WP_230430681.1;Parent=gene-LPH40_RS09870;Dbxref=Genbank:WP_230430681.1;Name=WP_230430681.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09870;product=hypothetical protein;protein_id=WP_230430681.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2387151 2387399 . + . ID=gene-LPH40_RS09875;Name=LPH40_RS09875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09875;old_locus_tag=LPH40_09875 NZ_CP087685.1 GeneMarkS-2+ CDS 2387151 2387399 . + 0 ID=cds-WP_171898048.1;Parent=gene-LPH40_RS09875;Dbxref=Genbank:WP_171898048.1;Name=WP_171898048.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09875;product=hypothetical protein;protein_id=WP_171898048.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2387683 2388675 . - . ID=gene-LPH40_RS09880;Name=LPH40_RS09880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09880;old_locus_tag=LPH40_09880 NZ_CP087685.1 GeneMarkS-2+ CDS 2387683 2388675 . - 0 ID=cds-WP_230428185.1;Parent=gene-LPH40_RS09880;Dbxref=Genbank:WP_230428185.1;Name=WP_230428185.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09880;product=hypothetical protein;protein_id=WP_230428185.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2388745 2388945 . - . ID=gene-LPH40_RS09885;Name=LPH40_RS09885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09885;old_locus_tag=LPH40_09885 NZ_CP087685.1 GeneMarkS-2+ CDS 2388745 2388945 . - 0 ID=cds-WP_230428186.1;Parent=gene-LPH40_RS09885;Dbxref=Genbank:WP_230428186.1;Name=WP_230428186.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09885;product=hypothetical protein;protein_id=WP_230428186.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2389017 2389766 . - . ID=gene-LPH40_RS09890;Name=LPH40_RS09890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09890;old_locus_tag=LPH40_09890 NZ_CP087685.1 Protein Homology CDS 2389017 2389766 . - 0 ID=cds-WP_038271430.1;Parent=gene-LPH40_RS09890;Dbxref=Genbank:WP_038271430.1;Name=WP_038271430.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016448858.1;locus_tag=LPH40_RS09890;product=TatD family hydrolase;protein_id=WP_038271430.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2389780 2391144 . - . ID=gene-LPH40_RS09895;Name=LPH40_RS09895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09895;old_locus_tag=LPH40_09895 NZ_CP087685.1 Protein Homology CDS 2389780 2391144 . - 0 ID=cds-WP_038271431.1;Parent=gene-LPH40_RS09895;Dbxref=Genbank:WP_038271431.1;Name=WP_038271431.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005413106.1;locus_tag=LPH40_RS09895;product=hypothetical protein;protein_id=WP_038271431.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2391141 2391848 . - . ID=gene-LPH40_RS09900;Name=LPH40_RS09900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09900;old_locus_tag=LPH40_09900 NZ_CP087685.1 Protein Homology CDS 2391141 2391848 . - 0 ID=cds-WP_230428187.1;Parent=gene-LPH40_RS09900;Dbxref=Genbank:WP_230428187.1;Name=WP_230428187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005413105.1;locus_tag=LPH40_RS09900;product=hypothetical protein;protein_id=WP_230428187.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2391998 2393929 . - . ID=gene-LPH40_RS09905;Name=LPH40_RS09905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09905;old_locus_tag=LPH40_09905 NZ_CP087685.1 Protein Homology CDS 2391998 2393929 . - 0 ID=cds-WP_038271433.1;Parent=gene-LPH40_RS09905;Dbxref=Genbank:WP_038271433.1;Name=WP_038271433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005413104.1;locus_tag=LPH40_RS09905;product=P-loop NTPase fold protein;protein_id=WP_038271433.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2394218 2394367 . + . ID=gene-LPH40_RS09910;Name=LPH40_RS09910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09910;old_locus_tag=LPH40_09910 NZ_CP087685.1 Protein Homology CDS 2394218 2394367 . + 0 ID=cds-WP_230428188.1;Parent=gene-LPH40_RS09910;Dbxref=Genbank:WP_230428188.1;Name=WP_230428188.1;Ontology_term=GO:0009307,GO:0000287,GO:0003677,GO:0009036;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,DNA binding|0003677||IEA,type II site-specific deoxyribonuclease activity|0009036||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: protein motif:HMM:NF021112.2;locus_tag=LPH40_RS09910;product=XcyI family restriction endonuclease;protein_id=WP_230428188.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2394364 2394714 . + . ID=gene-LPH40_RS09915;Name=LPH40_RS09915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09915;old_locus_tag=LPH40_09915 NZ_CP087685.1 GeneMarkS-2+ CDS 2394364 2394714 . + 0 ID=cds-WP_038271434.1;Parent=gene-LPH40_RS09915;Dbxref=Genbank:WP_038271434.1;Name=WP_038271434.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09915;product=hypothetical protein;protein_id=WP_038271434.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2394714 2395658 . + . ID=gene-LPH40_RS09920;Name=LPH40_RS09920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09920;old_locus_tag=LPH40_09920 NZ_CP087685.1 Protein Homology CDS 2394714 2395658 . + 0 ID=cds-WP_230428502.1;Parent=gene-LPH40_RS09920;Dbxref=Genbank:WP_230428502.1;Name=WP_230428502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085954.1;locus_tag=LPH40_RS09920;product=hypothetical protein;protein_id=WP_230428502.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2395982 2398891 . - . ID=gene-LPH40_RS09925;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;locus_tag=LPH40_RS09925;old_locus_tag=LPH40_09925 NZ_CP087685.1 Protein Homology CDS 2395982 2398891 . - 0 ID=cds-WP_230428279.1;Parent=gene-LPH40_RS09925;Dbxref=Genbank:WP_230428279.1;Name=WP_230428279.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887;gbkey=CDS;gene=uvrA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851525.1;locus_tag=LPH40_RS09925;product=excinuclease ABC subunit UvrA;protein_id=WP_230428279.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2399225 2399545 . + . ID=gene-LPH40_RS09930;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=LPH40_RS09930;old_locus_tag=LPH40_09930 NZ_CP087685.1 Protein Homology CDS 2399225 2399545 . + 0 ID=cds-WP_038271436.1;Parent=gene-LPH40_RS09930;Dbxref=Genbank:WP_038271436.1;Name=WP_038271436.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplU;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484328.1;locus_tag=LPH40_RS09930;product=50S ribosomal protein L21;protein_id=WP_038271436.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2399570 2399827 . + . ID=gene-LPH40_RS09935;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=LPH40_RS09935;old_locus_tag=LPH40_09935 NZ_CP087685.1 Protein Homology CDS 2399570 2399827 . + 0 ID=cds-WP_038271437.1;Parent=gene-LPH40_RS09935;Dbxref=Genbank:WP_038271437.1;Name=WP_038271437.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmA;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085949.1;locus_tag=LPH40_RS09935;product=50S ribosomal protein L27;protein_id=WP_038271437.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2399996 2401069 . + . ID=gene-LPH40_RS09940;Name=obgE;gbkey=Gene;gene=obgE;gene_biotype=protein_coding;locus_tag=LPH40_RS09940;old_locus_tag=LPH40_09940 NZ_CP087685.1 Protein Homology CDS 2399996 2401069 . + 0 ID=cds-WP_038271438.1;Parent=gene-LPH40_RS09940;Dbxref=Genbank:WP_038271438.1;Name=WP_038271438.1;Ontology_term=GO:0000287,GO:0003924,GO:0005525;gbkey=CDS;gene=obgE;go_function=magnesium ion binding|0000287||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017916359.1;locus_tag=LPH40_RS09940;product=GTPase ObgE;protein_id=WP_038271438.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2401183 2401452 . - . ID=gene-LPH40_RS09945;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=LPH40_RS09945;old_locus_tag=LPH40_09945 NZ_CP087685.1 Protein Homology CDS 2401183 2401452 . - 0 ID=cds-WP_038271456.1;Parent=gene-LPH40_RS09945;Dbxref=Genbank:WP_038271456.1;Name=WP_038271456.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsT;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019184515.1;locus_tag=LPH40_RS09945;product=30S ribosomal protein S20;protein_id=WP_038271456.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2401566 2403158 . + . ID=gene-LPH40_RS09950;Name=murJ;gbkey=Gene;gene=murJ;gene_biotype=protein_coding;locus_tag=LPH40_RS09950;old_locus_tag=LPH40_09950 NZ_CP087685.1 Protein Homology CDS 2401566 2403158 . + 0 ID=cds-WP_114867213.1;Parent=gene-LPH40_RS09950;Dbxref=Genbank:WP_114867213.1;Name=WP_114867213.1;Ontology_term=GO:0009252,GO:0034204;gbkey=CDS;gene=murJ;go_process=peptidoglycan biosynthetic process|0009252||IEA,lipid translocation|0034204||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158642.1;locus_tag=LPH40_RS09950;product=murein biosynthesis integral membrane protein MurJ;protein_id=WP_114867213.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2403314 2404261 . + . ID=gene-LPH40_RS09955;Name=LPH40_RS09955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09955;old_locus_tag=LPH40_09955 NZ_CP087685.1 Protein Homology CDS 2403314 2404261 . + 0 ID=cds-WP_114867093.1;Parent=gene-LPH40_RS09955;Dbxref=Genbank:WP_114867093.1;Name=WP_114867093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085938.1;locus_tag=LPH40_RS09955;product=bifunctional riboflavin kinase/FAD synthetase;protein_id=WP_114867093.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2404258 2407089 . + . ID=gene-LPH40_RS09960;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=LPH40_RS09960;old_locus_tag=LPH40_09960 NZ_CP087685.1 Protein Homology CDS 2404258 2407089 . + 0 ID=cds-WP_038272864.1;Parent=gene-LPH40_RS09960;Dbxref=Genbank:WP_038272864.1;Name=WP_038272864.1;Ontology_term=GO:0006428,GO:0004822,GO:0005737;gbkey=CDS;gene=ileS;go_component=cytoplasm|0005737||IEA;go_function=isoleucine-tRNA ligase activity|0004822||IEA;go_process=isoleucyl-tRNA aminoacylation|0006428||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928804.1;locus_tag=LPH40_RS09960;product=isoleucine--tRNA ligase;protein_id=WP_038272864.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2407408 2407911 . + . ID=gene-LPH40_RS09965;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=LPH40_RS09965;old_locus_tag=LPH40_09965 NZ_CP087685.1 Protein Homology CDS 2407408 2407911 . + 0 ID=cds-WP_038272868.1;Parent=gene-LPH40_RS09965;Dbxref=Genbank:WP_038272868.1;Name=WP_038272868.1;Ontology_term=GO:0006508,GO:0009306,GO:0004190,GO:0005886;gbkey=CDS;gene=lspA;go_component=plasma membrane|0005886||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=proteolysis|0006508||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304369.1;locus_tag=LPH40_RS09965;product=signal peptidase II;protein_id=WP_038272868.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2407970 2408920 . + . ID=gene-LPH40_RS09970;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=LPH40_RS09970;old_locus_tag=LPH40_09970 NZ_CP087685.1 Protein Homology CDS 2407970 2408920 . + 0 ID=cds-WP_038272862.1;Parent=gene-LPH40_RS09970;Dbxref=Genbank:WP_038272862.1;Name=WP_038272862.1;Ontology_term=GO:0019288,GO:0050992,GO:0046872,GO:0051745;gbkey=CDS;gene=ispH;go_function=metal ion binding|0046872||IEA,4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity|0051745||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA,dimethylallyl diphosphate biosynthetic process|0050992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258401.1;locus_tag=LPH40_RS09970;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=WP_038272862.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2409122 2409197 . + . ID=gene-LPH40_RS09975;Name=LPH40_RS09975;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS09975;old_locus_tag=LPH40_09975 NZ_CP087685.1 tRNAscan-SE tRNA 2409122 2409197 . + . ID=rna-LPH40_RS09975;Parent=gene-LPH40_RS09975;anticodon=(pos:2409155..2409157);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS09975;product=tRNA-Thr NZ_CP087685.1 tRNAscan-SE exon 2409122 2409197 . + . ID=exon-LPH40_RS09975-1;Parent=rna-LPH40_RS09975;anticodon=(pos:2409155..2409157);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS09975;product=tRNA-Thr NZ_CP087685.1 RefSeq gene 2409783 2410739 . - . ID=gene-LPH40_RS09980;Name=LPH40_RS09980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09980;old_locus_tag=LPH40_09980 NZ_CP087685.1 Protein Homology CDS 2409783 2410739 . - 0 ID=cds-WP_038272860.1;Parent=gene-LPH40_RS09980;Dbxref=Genbank:WP_038272860.1;Name=WP_038272860.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012307.2;locus_tag=LPH40_RS09980;product=reverse transcriptase family protein;protein_id=WP_038272860.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2410693 2411010 . - . ID=gene-LPH40_RS09985;Name=LPH40_RS09985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09985;old_locus_tag=LPH40_09985 NZ_CP087685.1 Protein Homology CDS 2410693 2411010 . - 0 ID=cds-WP_038272858.1;Parent=gene-LPH40_RS09985;Dbxref=Genbank:WP_038272858.1;Name=WP_038272858.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024252.2;locus_tag=LPH40_RS09985;product=helix-turn-helix transcriptional regulator;protein_id=WP_038272858.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2411886 2412191 . - . ID=gene-LPH40_RS09990;Name=LPH40_RS09990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09990;old_locus_tag=LPH40_09990 NZ_CP087685.1 GeneMarkS-2+ CDS 2411886 2412191 . - 0 ID=cds-WP_038272854.1;Parent=gene-LPH40_RS09990;Dbxref=Genbank:WP_038272854.1;Name=WP_038272854.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09990;product=hypothetical protein;protein_id=WP_038272854.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2412374 2412550 . + . ID=gene-LPH40_RS09995;Name=LPH40_RS09995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS09995;old_locus_tag=LPH40_09995 NZ_CP087685.1 GeneMarkS-2+ CDS 2412374 2412550 . + 0 ID=cds-WP_160165227.1;Parent=gene-LPH40_RS09995;Dbxref=Genbank:WP_160165227.1;Name=WP_160165227.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS09995;product=hypothetical protein;protein_id=WP_160165227.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2412780 2412998 . - . ID=gene-LPH40_RS10000;Name=LPH40_RS10000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10000;old_locus_tag=LPH40_10000 NZ_CP087685.1 GeneMarkS-2+ CDS 2412780 2412998 . - 0 ID=cds-WP_038272853.1;Parent=gene-LPH40_RS10000;Dbxref=Genbank:WP_038272853.1;Name=WP_038272853.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10000;product=hypothetical protein;protein_id=WP_038272853.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2413121 2413339 . + . ID=gene-LPH40_RS10005;Name=LPH40_RS10005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10005;old_locus_tag=LPH40_10005 NZ_CP087685.1 GeneMarkS-2+ CDS 2413121 2413339 . + 0 ID=cds-WP_230428189.1;Parent=gene-LPH40_RS10005;Dbxref=Genbank:WP_230428189.1;Name=WP_230428189.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10005;product=hypothetical protein;protein_id=WP_230428189.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2413744 2413902 . + . ID=gene-LPH40_RS10010;Name=LPH40_RS10010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10010;old_locus_tag=LPH40_10010 NZ_CP087685.1 GeneMarkS-2+ CDS 2413744 2413902 . + 0 ID=cds-WP_230428190.1;Parent=gene-LPH40_RS10010;Dbxref=Genbank:WP_230428190.1;Name=WP_230428190.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10010;product=hypothetical protein;protein_id=WP_230428190.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2414009 2414422 . + . ID=gene-LPH40_RS10015;Name=LPH40_RS10015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10015;old_locus_tag=LPH40_10015 NZ_CP087685.1 Protein Homology CDS 2414009 2414422 . + 0 ID=cds-WP_051482383.1;Parent=gene-LPH40_RS10015;Dbxref=Genbank:WP_051482383.1;Name=WP_051482383.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: protein motif:HMM:NF016923.2;locus_tag=LPH40_RS10015;product=phage major capsid protein;protein_id=WP_051482383.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2414736 2414915 . + . ID=gene-LPH40_RS10020;Name=LPH40_RS10020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10020;old_locus_tag=LPH40_10020 NZ_CP087685.1 GeneMarkS-2+ CDS 2414736 2414915 . + 0 ID=cds-WP_152536664.1;Parent=gene-LPH40_RS10020;Dbxref=Genbank:WP_152536664.1;Name=WP_152536664.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10020;product=hypothetical protein;protein_id=WP_152536664.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2415138 2415347 . - . ID=gene-LPH40_RS10025;Name=LPH40_RS10025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10025;old_locus_tag=LPH40_10025 NZ_CP087685.1 GeneMarkS-2+ CDS 2415138 2415347 . - 0 ID=cds-WP_230428192.1;Parent=gene-LPH40_RS10025;Dbxref=Genbank:WP_230428192.1;Name=WP_230428192.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10025;product=hypothetical protein;protein_id=WP_230428192.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2415399 2415572 . + . ID=gene-LPH40_RS10030;Name=LPH40_RS10030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10030;old_locus_tag=LPH40_10030 NZ_CP087685.1 GeneMarkS-2+ CDS 2415399 2415572 . + 0 ID=cds-WP_230428193.1;Parent=gene-LPH40_RS10030;Dbxref=Genbank:WP_230428193.1;Name=WP_230428193.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10030;product=hypothetical protein;protein_id=WP_230428193.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2415767 2415934 . - . ID=gene-LPH40_RS10035;Name=LPH40_RS10035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10035;old_locus_tag=LPH40_10035 NZ_CP087685.1 GeneMarkS-2+ CDS 2415767 2415934 . - 0 ID=cds-WP_171898049.1;Parent=gene-LPH40_RS10035;Dbxref=Genbank:WP_171898049.1;Name=WP_171898049.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10035;product=hypothetical protein;protein_id=WP_171898049.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2415970 2419497 . - . ID=gene-LPH40_RS10040;Name=LPH40_RS10040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10040;old_locus_tag=LPH40_10040 NZ_CP087685.1 Protein Homology CDS 2415970 2419497 . - 0 ID=cds-WP_038272843.1;Parent=gene-LPH40_RS10040;Dbxref=Genbank:WP_038272843.1;Name=WP_038272843.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088084.1;locus_tag=LPH40_RS10040;product=AAA domain-containing protein;protein_id=WP_038272843.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2420225 2427994 . - . ID=gene-LPH40_RS10045;Name=LPH40_RS10045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10045;old_locus_tag=LPH40_10045 NZ_CP087685.1 Protein Homology CDS 2420225 2427994 . - 0 ID=cds-WP_114867094.1;Parent=gene-LPH40_RS10045;Dbxref=Genbank:WP_114867094.1;Name=WP_114867094.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382677.1;locus_tag=LPH40_RS10045;product=bacteriocin;protein_id=WP_114867094.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2427994 2428617 . - . ID=gene-LPH40_RS10050;Name=LPH40_RS10050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10050;old_locus_tag=LPH40_10050 NZ_CP087685.1 Protein Homology CDS 2427994 2428617 . - 0 ID=cds-WP_038270281.1;Parent=gene-LPH40_RS10050;Dbxref=Genbank:WP_038270281.1;Name=WP_038270281.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098107.1;locus_tag=LPH40_RS10050;product=hypothetical protein;protein_id=WP_038270281.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2428614 2428892 . - . ID=gene-LPH40_RS10055;Name=LPH40_RS10055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10055;old_locus_tag=LPH40_10055 NZ_CP087685.1 Protein Homology CDS 2428614 2428892 . - 0 ID=cds-WP_038270278.1;Parent=gene-LPH40_RS10055;Dbxref=Genbank:WP_038270278.1;Name=WP_038270278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894851.1;locus_tag=LPH40_RS10055;product=hypothetical protein;protein_id=WP_038270278.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2428889 2429512 . - . ID=gene-LPH40_RS10060;Name=LPH40_RS10060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10060;old_locus_tag=LPH40_10060 NZ_CP087685.1 Protein Homology CDS 2428889 2429512 . - 0 ID=cds-WP_038270275.1;Parent=gene-LPH40_RS10060;Dbxref=Genbank:WP_038270275.1;Name=WP_038270275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098107.1;locus_tag=LPH40_RS10060;product=hypothetical protein;protein_id=WP_038270275.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2429509 2429787 . - . ID=gene-LPH40_RS10065;Name=LPH40_RS10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10065;old_locus_tag=LPH40_10065 NZ_CP087685.1 Protein Homology CDS 2429509 2429787 . - 0 ID=cds-WP_038270272.1;Parent=gene-LPH40_RS10065;Dbxref=Genbank:WP_038270272.1;Name=WP_038270272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894851.1;locus_tag=LPH40_RS10065;product=hypothetical protein;protein_id=WP_038270272.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2429784 2430407 . - . ID=gene-LPH40_RS10070;Name=LPH40_RS10070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10070;old_locus_tag=LPH40_10070 NZ_CP087685.1 Protein Homology CDS 2429784 2430407 . - 0 ID=cds-WP_038270268.1;Parent=gene-LPH40_RS10070;Dbxref=Genbank:WP_038270268.1;Name=WP_038270268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098099.1;locus_tag=LPH40_RS10070;product=hypothetical protein;protein_id=WP_038270268.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2430404 2430682 . - . ID=gene-LPH40_RS10075;Name=LPH40_RS10075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10075;old_locus_tag=LPH40_10075 NZ_CP087685.1 Protein Homology CDS 2430404 2430682 . - 0 ID=cds-WP_038270265.1;Parent=gene-LPH40_RS10075;Dbxref=Genbank:WP_038270265.1;Name=WP_038270265.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894851.1;locus_tag=LPH40_RS10075;product=hypothetical protein;protein_id=WP_038270265.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2430679 2431302 . - . ID=gene-LPH40_RS10080;Name=LPH40_RS10080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10080;old_locus_tag=LPH40_10080 NZ_CP087685.1 Protein Homology CDS 2430679 2431302 . - 0 ID=cds-WP_038270262.1;Parent=gene-LPH40_RS10080;Dbxref=Genbank:WP_038270262.1;Name=WP_038270262.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098107.1;locus_tag=LPH40_RS10080;product=hypothetical protein;protein_id=WP_038270262.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2431299 2431577 . - . ID=gene-LPH40_RS10085;Name=LPH40_RS10085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10085;old_locus_tag=LPH40_10085 NZ_CP087685.1 Protein Homology CDS 2431299 2431577 . - 0 ID=cds-WP_051482245.1;Parent=gene-LPH40_RS10085;Dbxref=Genbank:WP_051482245.1;Name=WP_051482245.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098106.1;locus_tag=LPH40_RS10085;product=hypothetical protein;protein_id=WP_051482245.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2431571 2432305 . - . ID=gene-LPH40_RS10090;Name=LPH40_RS10090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10090;old_locus_tag=LPH40_10090 NZ_CP087685.1 Protein Homology CDS 2431571 2432305 . - 0 ID=cds-WP_230428194.1;Parent=gene-LPH40_RS10090;Dbxref=Genbank:WP_230428194.1;Name=WP_230428194.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098107.1;locus_tag=LPH40_RS10090;product=hypothetical protein;protein_id=WP_230428194.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2432452 2432961 . - . ID=gene-LPH40_RS10095;Name=LPH40_RS10095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10095;old_locus_tag=LPH40_10095 NZ_CP087685.1 Protein Homology CDS 2432452 2432961 . - 0 ID=cds-WP_038270259.1;Parent=gene-LPH40_RS10095;Dbxref=Genbank:WP_038270259.1;Name=WP_038270259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087886.1;locus_tag=LPH40_RS10095;product=hypothetical protein;protein_id=WP_038270259.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2433523 2433768 . - . ID=gene-LPH40_RS10100;Name=LPH40_RS10100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10100;old_locus_tag=LPH40_10100 NZ_CP087685.1 GeneMarkS-2+ CDS 2433523 2433768 . - 0 ID=cds-WP_152536569.1;Parent=gene-LPH40_RS10100;Dbxref=Genbank:WP_152536569.1;Name=WP_152536569.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10100;product=hypothetical protein;protein_id=WP_152536569.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2433886 2435307 . - . ID=gene-LPH40_RS10105;Name=LPH40_RS10105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10105;old_locus_tag=LPH40_10105 NZ_CP087685.1 Protein Homology CDS 2433886 2435307 . - 0 ID=cds-WP_038270256.1;Parent=gene-LPH40_RS10105;Dbxref=Genbank:WP_038270256.1;Name=WP_038270256.1;Ontology_term=GO:0030253;gbkey=CDS;go_process=protein secretion by the type I secretion system|0030253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920693.1;locus_tag=LPH40_RS10105;product=HlyD family type I secretion periplasmic adaptor subunit;protein_id=WP_038270256.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2435304 2437466 . - . ID=gene-LPH40_RS10110;Name=LPH40_RS10110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10110;old_locus_tag=LPH40_10110 NZ_CP087685.1 Protein Homology CDS 2435304 2437466 . - 0 ID=cds-WP_038270253.1;Parent=gene-LPH40_RS10110;Dbxref=Genbank:WP_038270253.1;Name=WP_038270253.1;Ontology_term=GO:0030253;gbkey=CDS;go_process=protein secretion by the type I secretion system|0030253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607380.1;locus_tag=LPH40_RS10110;product=type I secretion system permease/ATPase;protein_id=WP_038270253.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2437855 2439129 . + . ID=gene-LPH40_RS10115;Name=LPH40_RS10115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10115;old_locus_tag=LPH40_10115 NZ_CP087685.1 Protein Homology CDS 2437855 2439129 . + 0 ID=cds-WP_038270250.1;Parent=gene-LPH40_RS10115;Dbxref=Genbank:WP_038270250.1;Name=WP_038270250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851306.1;locus_tag=LPH40_RS10115;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_038270250.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2439750 2440493 . - . ID=gene-LPH40_RS10120;Name=LPH40_RS10120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10120;old_locus_tag=LPH40_10120 NZ_CP087685.1 Protein Homology CDS 2439750 2440493 . - 0 ID=cds-WP_230428280.1;Parent=gene-LPH40_RS10120;Dbxref=Genbank:WP_230428280.1;Name=WP_230428280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993124.1;locus_tag=LPH40_RS10120;product=polysaccharide deacetylase family protein;protein_id=WP_230428280.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2440593 2441519 . + . ID=gene-LPH40_RS10125;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=LPH40_RS10125;old_locus_tag=LPH40_10125 NZ_CP087685.1 Protein Homology CDS 2440593 2441519 . + 0 ID=cds-WP_038270326.1;Parent=gene-LPH40_RS10125;Dbxref=Genbank:WP_038270326.1;Name=WP_038270326.1;Ontology_term=GO:0009055;gbkey=CDS;gene=grxD;go_function=electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913558.1;locus_tag=LPH40_RS10125;product=Grx4 family monothiol glutaredoxin;protein_id=WP_038270326.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2441587 2441844 . + . ID=gene-LPH40_RS10130;Name=LPH40_RS10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10130;old_locus_tag=LPH40_10130 NZ_CP087685.1 GeneMarkS-2+ CDS 2441587 2441844 . + 0 ID=cds-WP_230428195.1;Parent=gene-LPH40_RS10130;Dbxref=Genbank:WP_230428195.1;Name=WP_230428195.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10130;product=hypothetical protein;protein_id=WP_230428195.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2442067 2443602 . - . ID=gene-LPH40_RS10135;Name=LPH40_RS10135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10135;old_locus_tag=LPH40_10135 NZ_CP087685.1 Protein Homology CDS 2442067 2443602 . - 0 ID=cds-WP_038270246.1;Parent=gene-LPH40_RS10135;Dbxref=Genbank:WP_038270246.1;Name=WP_038270246.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303782.1;locus_tag=LPH40_RS10135;product=S53 family peptidase;protein_id=WP_038270246.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2444161 2445036 . - . ID=gene-LPH40_RS10140;Name=LPH40_RS10140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10140;old_locus_tag=LPH40_10140 NZ_CP087685.1 Protein Homology CDS 2444161 2445036 . - 0 ID=cds-WP_038270243.1;Parent=gene-LPH40_RS10140;Dbxref=Genbank:WP_038270243.1;Name=WP_038270243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004543218.1;locus_tag=LPH40_RS10140;product=LysR family transcriptional regulator;protein_id=WP_038270243.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2445139 2446020 . + . ID=gene-LPH40_RS10145;Name=LPH40_RS10145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10145;old_locus_tag=LPH40_10145 NZ_CP087685.1 Protein Homology CDS 2445139 2446020 . + 0 ID=cds-WP_038270240.1;Parent=gene-LPH40_RS10145;Dbxref=Genbank:WP_038270240.1;Name=WP_038270240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014403947.1;locus_tag=LPH40_RS10145;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_038270240.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2446083 2447156 . + . ID=gene-LPH40_RS10150;Name=LPH40_RS10150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10150;old_locus_tag=LPH40_10150 NZ_CP087685.1 Protein Homology CDS 2446083 2447156 . + 0 ID=cds-WP_038270238.1;Parent=gene-LPH40_RS10150;Dbxref=Genbank:WP_038270238.1;Name=WP_038270238.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014403948.1;locus_tag=LPH40_RS10150;product=alkene reductase;protein_id=WP_038270238.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2447167 2447904 . + . ID=gene-LPH40_RS10155;Name=LPH40_RS10155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10155;old_locus_tag=LPH40_10155 NZ_CP087685.1 Protein Homology CDS 2447167 2447904 . + 0 ID=cds-WP_038270235.1;Parent=gene-LPH40_RS10155;Dbxref=Genbank:WP_038270235.1;Name=WP_038270235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014403949.1;locus_tag=LPH40_RS10155;product=pirin family protein;protein_id=WP_038270235.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2447924 2448487 . + . ID=gene-LPH40_RS10160;Name=LPH40_RS10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10160;old_locus_tag=LPH40_10160 NZ_CP087685.1 Protein Homology CDS 2447924 2448487 . + 0 ID=cds-WP_200866178.1;Parent=gene-LPH40_RS10160;Dbxref=Genbank:WP_200866178.1;Name=WP_200866178.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013053.2;locus_tag=LPH40_RS10160;product=isochorismatase family protein;protein_id=WP_200866178.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2448765 2449178 . - . ID=gene-LPH40_RS10165;Name=LPH40_RS10165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10165;old_locus_tag=LPH40_10165 NZ_CP087685.1 GeneMarkS-2+ CDS 2448765 2449178 . - 0 ID=cds-WP_038270232.1;Parent=gene-LPH40_RS10165;Dbxref=Genbank:WP_038270232.1;Name=WP_038270232.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10165;product=hypothetical protein;protein_id=WP_038270232.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2449326 2450375 . + . ID=gene-LPH40_RS10170;Name=LPH40_RS10170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10170;old_locus_tag=LPH40_10170 NZ_CP087685.1 Protein Homology CDS 2449326 2450375 . + 0 ID=cds-WP_038270222.1;Parent=gene-LPH40_RS10170;Dbxref=Genbank:WP_038270222.1;Name=WP_038270222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851301.1;locus_tag=LPH40_RS10170;product=NAD(P)-dependent alcohol dehydrogenase;protein_id=WP_038270222.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2450468 2451433 . + . ID=gene-LPH40_RS10175;Name=LPH40_RS10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10175;old_locus_tag=LPH40_10175 NZ_CP087685.1 Protein Homology CDS 2450468 2451433 . + 0 ID=cds-WP_038270221.1;Parent=gene-LPH40_RS10175;Dbxref=Genbank:WP_038270221.1;Name=WP_038270221.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014402676.1;locus_tag=LPH40_RS10175;product=NADP-dependent oxidoreductase;protein_id=WP_038270221.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2451454 2451624 . + . ID=gene-LPH40_RS10180;Name=LPH40_RS10180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10180;old_locus_tag=LPH40_10180 NZ_CP087685.1 GeneMarkS-2+ CDS 2451454 2451624 . + 0 ID=cds-WP_160165118.1;Parent=gene-LPH40_RS10180;Dbxref=Genbank:WP_160165118.1;Name=WP_160165118.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10180;product=hypothetical protein;protein_id=WP_160165118.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2452391 2452657 . + . ID=gene-LPH40_RS10185;Name=LPH40_RS10185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10185;old_locus_tag=LPH40_10185 NZ_CP087685.1 GeneMarkS-2+ CDS 2452391 2452657 . + 0 ID=cds-WP_152536567.1;Parent=gene-LPH40_RS10185;Dbxref=Genbank:WP_152536567.1;Name=WP_152536567.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10185;product=hypothetical protein;protein_id=WP_152536567.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2452912 2453463 . + . ID=gene-LPH40_RS10190;Name=LPH40_RS10190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10190;old_locus_tag=LPH40_10190 NZ_CP087685.1 Protein Homology CDS 2452912 2453463 . + 0 ID=cds-WP_230428197.1;Parent=gene-LPH40_RS10190;Dbxref=Genbank:WP_230428197.1;Name=WP_230428197.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090977.1;locus_tag=LPH40_RS10190;product=hypothetical protein;protein_id=WP_230428197.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2453630 2456734 . - . ID=gene-LPH40_RS10195;Name=LPH40_RS10195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10195;old_locus_tag=LPH40_10195 NZ_CP087685.1 Protein Homology CDS 2453630 2456734 . - 0 ID=cds-WP_038270212.1;Parent=gene-LPH40_RS10195;Dbxref=Genbank:WP_038270212.1;Name=WP_038270212.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852089.1;locus_tag=LPH40_RS10195;product=efflux RND transporter permease subunit;protein_id=WP_038270212.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2456823 2460050 . - . ID=gene-LPH40_RS10200;Name=LPH40_RS10200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10200;old_locus_tag=LPH40_10200 NZ_CP087685.1 Protein Homology CDS 2456823 2460050 . - 0 ID=cds-WP_038270209.1;Parent=gene-LPH40_RS10200;Dbxref=Genbank:WP_038270209.1;Name=WP_038270209.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852090.1;locus_tag=LPH40_RS10200;product=efflux RND transporter permease subunit;protein_id=WP_038270209.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2460118 2461356 . - . ID=gene-LPH40_RS10205;Name=LPH40_RS10205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10205;old_locus_tag=LPH40_10205 NZ_CP087685.1 Protein Homology CDS 2460118 2461356 . - 0 ID=cds-WP_038270206.1;Parent=gene-LPH40_RS10205;Dbxref=Genbank:WP_038270206.1;Name=WP_038270206.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849343.1;locus_tag=LPH40_RS10205;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_038270206.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2461541 2462356 . + . ID=gene-LPH40_RS10210;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=LPH40_RS10210;old_locus_tag=LPH40_10210 NZ_CP087685.1 Protein Homology CDS 2461541 2462356 . + 0 ID=cds-WP_038270204.1;Parent=gene-LPH40_RS10210;Dbxref=Genbank:WP_038270204.1;Name=WP_038270204.1;Note=Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;Ontology_term=GO:0008616,GO:0033739,GO:0043867;gbkey=CDS;gene=queF;go_function=preQ1 synthase activity|0033739||IEA,7-cyano-7-deazaguanine tRNA-ribosyltransferase activity|0043867||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171998.1;locus_tag=LPH40_RS10210;product=NADPH-dependent 7-cyano-7-deazaguanine reductase QueF;protein_id=WP_038270204.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2462671 2462907 . + . ID=gene-LPH40_RS10215;Name=LPH40_RS10215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10215;old_locus_tag=LPH40_10215 NZ_CP087685.1 GeneMarkS-2+ CDS 2462671 2462907 . + 0 ID=cds-WP_152536565.1;Parent=gene-LPH40_RS10215;Dbxref=Genbank:WP_152536565.1;Name=WP_152536565.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10215;product=hypothetical protein;protein_id=WP_152536565.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2463036 2463158 . + . ID=gene-LPH40_RS12050;Name=LPH40_RS12050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS12050 NZ_CP087685.1 GeneMarkS-2+ CDS 2463036 2463158 . + 0 ID=cds-WP_267903177.1;Parent=gene-LPH40_RS12050;Dbxref=Genbank:WP_267903177.1;Name=WP_267903177.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS12050;product=hypothetical protein;protein_id=WP_267903177.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2463364 2463669 . - . ID=gene-LPH40_RS10220;Name=LPH40_RS10220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10220;old_locus_tag=LPH40_10220 NZ_CP087685.1 Protein Homology CDS 2463364 2463669 . - 0 ID=cds-WP_038270202.1;Parent=gene-LPH40_RS10220;Dbxref=Genbank:WP_038270202.1;Name=WP_038270202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090997.1;locus_tag=LPH40_RS10220;product=hypothetical protein;protein_id=WP_038270202.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2463666 2463992 . - . ID=gene-LPH40_RS10225;Name=LPH40_RS10225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10225;old_locus_tag=LPH40_10225 NZ_CP087685.1 GeneMarkS-2+ CDS 2463666 2463992 . - 0 ID=cds-WP_152536564.1;Parent=gene-LPH40_RS10225;Dbxref=Genbank:WP_152536564.1;Name=WP_152536564.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10225;product=hypothetical protein;protein_id=WP_152536564.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2466042 2467469 . + . ID=gene-LPH40_RS10230;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=LPH40_RS10230;old_locus_tag=LPH40_10230 NZ_CP087685.1 Protein Homology CDS 2466042 2467469 . + 0 ID=cds-WP_038270200.1;Parent=gene-LPH40_RS10230;Dbxref=Genbank:WP_038270200.1;Name=WP_038270200.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuC;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015277365.1;locus_tag=LPH40_RS10230;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_038270200.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2467772 2468419 . + . ID=gene-LPH40_RS10235;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=LPH40_RS10235;old_locus_tag=LPH40_10235 NZ_CP087685.1 Protein Homology CDS 2467772 2468419 . + 0 ID=cds-WP_038270325.1;Parent=gene-LPH40_RS10235;Dbxref=Genbank:WP_038270325.1;Name=WP_038270325.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuD;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301096.1;locus_tag=LPH40_RS10235;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_038270325.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2469029 2470102 . + . ID=gene-LPH40_RS10240;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;locus_tag=LPH40_RS10240;old_locus_tag=LPH40_10240 NZ_CP087685.1 Protein Homology CDS 2469029 2470102 . + 0 ID=cds-WP_038270194.1;Parent=gene-LPH40_RS10240;Dbxref=Genbank:WP_038270194.1;Name=WP_038270194.1;Ontology_term=GO:0009098,GO:0003862;gbkey=CDS;gene=leuB;go_function=3-isopropylmalate dehydrogenase activity|0003862||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912018.1;locus_tag=LPH40_RS10240;product=3-isopropylmalate dehydrogenase;protein_id=WP_038270194.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2470829 2471527 . + . ID=gene-LPH40_RS10245;Name=LPH40_RS10245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10245;old_locus_tag=LPH40_10245 NZ_CP087685.1 Protein Homology CDS 2470829 2471527 . + 0 ID=cds-WP_038270191.1;Parent=gene-LPH40_RS10245;Dbxref=Genbank:WP_038270191.1;Name=WP_038270191.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085793.1;locus_tag=LPH40_RS10245;product=polysaccharide export protein;protein_id=WP_038270191.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2471509 2472909 . + . ID=gene-LPH40_RS10250;Name=LPH40_RS10250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10250;old_locus_tag=LPH40_10250 NZ_CP087685.1 Protein Homology CDS 2471509 2472909 . + 0 ID=cds-WP_171898076.1;Parent=gene-LPH40_RS10250;Dbxref=Genbank:WP_171898076.1;Name=WP_171898076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157116.1;locus_tag=LPH40_RS10250;product=Wzz/FepE/Etk N-terminal domain-containing protein;protein_id=WP_171898076.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2473143 2474597 . + . ID=gene-LPH40_RS10255;Name=LPH40_RS10255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10255;old_locus_tag=LPH40_10255 NZ_CP087685.1 Protein Homology CDS 2473143 2474597 . + 0 ID=cds-WP_038270186.1;Parent=gene-LPH40_RS10255;Dbxref=Genbank:WP_038270186.1;Name=WP_038270186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914017.1;locus_tag=LPH40_RS10255;product=undecaprenyl-phosphate glucose phosphotransferase;protein_id=WP_038270186.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2474655 2475917 . + . ID=gene-LPH40_RS10260;Name=LPH40_RS10260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10260;old_locus_tag=LPH40_10260 NZ_CP087685.1 Protein Homology CDS 2474655 2475917 . + 0 ID=cds-WP_171898077.1;Parent=gene-LPH40_RS10260;Dbxref=Genbank:WP_171898077.1;Name=WP_171898077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117349.1;locus_tag=LPH40_RS10260;product=polysaccharide biosynthesis protein GumE;protein_id=WP_171898077.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2475914 2476999 . + . ID=gene-LPH40_RS10265;Name=LPH40_RS10265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10265;old_locus_tag=LPH40_10265 NZ_CP087685.1 Protein Homology CDS 2475914 2476999 . + 0 ID=cds-WP_230428198.1;Parent=gene-LPH40_RS10265;Dbxref=Genbank:WP_230428198.1;Name=WP_230428198.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098087.1;locus_tag=LPH40_RS10265;product=acyltransferase family protein;protein_id=WP_230428198.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2477446 2478588 . + . ID=gene-LPH40_RS10270;Name=LPH40_RS10270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10270;old_locus_tag=LPH40_10270 NZ_CP087685.1 Protein Homology CDS 2477446 2478588 . + 0 ID=cds-WP_038270324.1;Parent=gene-LPH40_RS10270;Dbxref=Genbank:WP_038270324.1;Name=WP_038270324.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851288.1;locus_tag=LPH40_RS10270;product=glycosyltransferase family 4 protein;protein_id=WP_038270324.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2478828 2479199 . + . ID=gene-LPH40_RS10275;Name=LPH40_RS10275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10275;old_locus_tag=LPH40_10275 NZ_CP087685.1 GeneMarkS-2+ CDS 2478828 2479199 . + 0 ID=cds-WP_162814090.1;Parent=gene-LPH40_RS10275;Dbxref=Genbank:WP_162814090.1;Name=WP_162814090.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10275;product=hypothetical protein;protein_id=WP_162814090.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2479196 2480728 . + . ID=gene-LPH40_RS10280;Name=LPH40_RS10280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10280;old_locus_tag=LPH40_10280 NZ_CP087685.1 Protein Homology CDS 2479196 2480728 . + 0 ID=cds-WP_038270183.1;Parent=gene-LPH40_RS10280;Dbxref=Genbank:WP_038270183.1;Name=WP_038270183.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851287.1;locus_tag=LPH40_RS10280;product=lipopolysaccharide biosynthesis protein;protein_id=WP_038270183.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2480848 2481981 . + . ID=gene-LPH40_RS10285;Name=LPH40_RS10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10285;old_locus_tag=LPH40_10285 NZ_CP087685.1 Protein Homology CDS 2480848 2481981 . + 0 ID=cds-WP_038270322.1;Parent=gene-LPH40_RS10285;Dbxref=Genbank:WP_038270322.1;Name=WP_038270322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098085.1;locus_tag=LPH40_RS10285;product=glycosyltransferase;protein_id=WP_038270322.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2482845 2483615 . + . ID=gene-LPH40_RS10290;Name=LPH40_RS10290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10290;old_locus_tag=LPH40_10290 NZ_CP087685.1 Protein Homology CDS 2482845 2483615 . + 0 ID=cds-WP_051482240.1;Parent=gene-LPH40_RS10290;Dbxref=Genbank:WP_051482240.1;Name=WP_051482240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851285.1;locus_tag=LPH40_RS10290;product=WecB/TagA/CpsF family glycosyltransferase;protein_id=WP_051482240.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2483841 2484560 . - . ID=gene-LPH40_RS10295;Name=LPH40_RS10295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10295;old_locus_tag=LPH40_10295 NZ_CP087685.1 Protein Homology CDS 2483841 2484560 . - 0 ID=cds-WP_038270180.1;Parent=gene-LPH40_RS10295;Dbxref=Genbank:WP_038270180.1;Name=WP_038270180.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851284.1;locus_tag=LPH40_RS10295;product=response regulator;protein_id=WP_038270180.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2484751 2486082 . + . ID=gene-LPH40_RS10300;Name=rlmD;gbkey=Gene;gene=rlmD;gene_biotype=protein_coding;locus_tag=LPH40_RS10300;old_locus_tag=LPH40_10300 NZ_CP087685.1 Protein Homology CDS 2484751 2486082 . + 0 ID=cds-WP_038270321.1;Parent=gene-LPH40_RS10300;Dbxref=Genbank:WP_038270321.1;Name=WP_038270321.1;Ontology_term=GO:0006396,GO:0008173;gbkey=CDS;gene=rlmD;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337972.1;locus_tag=LPH40_RS10300;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=WP_038270321.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2486145 2486642 . + . ID=gene-LPH40_RS10305;Name=LPH40_RS10305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10305;old_locus_tag=LPH40_10305 NZ_CP087685.1 Protein Homology CDS 2486145 2486642 . + 0 ID=cds-WP_038270320.1;Parent=gene-LPH40_RS10305;Dbxref=Genbank:WP_038270320.1;Name=WP_038270320.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851283.1;locus_tag=LPH40_RS10305;product=CYTH domain-containing protein;protein_id=WP_038270320.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2486929 2487936 . + . ID=gene-LPH40_RS10310;Name=nagZ;gbkey=Gene;gene=nagZ;gene_biotype=protein_coding;locus_tag=LPH40_RS10310;old_locus_tag=LPH40_10310 NZ_CP087685.1 Protein Homology CDS 2486929 2487936 . + 0 ID=cds-WP_038270178.1;Parent=gene-LPH40_RS10310;Dbxref=Genbank:WP_038270178.1;Name=WP_038270178.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=nagZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851282.1;locus_tag=LPH40_RS10310;product=beta-N-acetylhexosaminidase;protein_id=WP_038270178.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2487936 2488490 . + . ID=gene-LPH40_RS10315;Name=LPH40_RS10315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10315;old_locus_tag=LPH40_10315 NZ_CP087685.1 Protein Homology CDS 2487936 2488490 . + 0 ID=cds-WP_038270175.1;Parent=gene-LPH40_RS10315;Dbxref=Genbank:WP_038270175.1;Name=WP_038270175.1;Ontology_term=GO:0009116;gbkey=CDS;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449878.1;locus_tag=LPH40_RS10315;product=hypoxanthine-guanine phosphoribosyltransferase;protein_id=WP_038270175.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2488498 2489250 . + . ID=gene-LPH40_RS10320;Name=LPH40_RS10320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10320;old_locus_tag=LPH40_10320 NZ_CP087685.1 Protein Homology CDS 2488498 2489250 . + 0 ID=cds-WP_114867214.1;Parent=gene-LPH40_RS10320;Dbxref=Genbank:WP_114867214.1;Name=WP_114867214.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408258.1;locus_tag=LPH40_RS10320;product=S-methyl-5'-thioinosine phosphorylase;protein_id=WP_114867214.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2489339 2489542 . + . ID=gene-LPH40_RS10325;Name=LPH40_RS10325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10325;old_locus_tag=LPH40_10325 NZ_CP087685.1 Protein Homology CDS 2489339 2489542 . + 0 ID=cds-WP_038270170.1;Parent=gene-LPH40_RS10325;Dbxref=Genbank:WP_038270170.1;Name=WP_038270170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003419650.1;locus_tag=LPH40_RS10325;product=cold-shock protein;protein_id=WP_038270170.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2491036 2493555 . + . ID=gene-LPH40_RS10330;Name=LPH40_RS10330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10330;old_locus_tag=LPH40_10330 NZ_CP087685.1 Protein Homology CDS 2491036 2493555 . + 0 ID=cds-WP_230428199.1;Parent=gene-LPH40_RS10330;Dbxref=Genbank:WP_230428199.1;Name=WP_230428199.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894795.1;locus_tag=LPH40_RS10330;product=autotransporter domain-containing protein;protein_id=WP_230428199.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2493772 2494275 . - . ID=gene-LPH40_RS10335;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=LPH40_RS10335;old_locus_tag=LPH40_10335 NZ_CP087685.1 Protein Homology CDS 2493772 2494275 . - 0 ID=cds-WP_038270168.1;Parent=gene-LPH40_RS10335;Dbxref=Genbank:WP_038270168.1;Name=WP_038270168.1;Ontology_term=GO:0003723;gbkey=CDS;gene=smpB;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050971.1;locus_tag=LPH40_RS10335;product=SsrA-binding protein SmpB;protein_id=WP_038270168.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2494339 2494776 . + . ID=gene-LPH40_RS10340;Name=LPH40_RS10340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10340;old_locus_tag=LPH40_10340 NZ_CP087685.1 Protein Homology CDS 2494339 2494776 . + 0 ID=cds-WP_038270167.1;Parent=gene-LPH40_RS10340;Dbxref=Genbank:WP_038270167.1;Name=WP_038270167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894793.1;locus_tag=LPH40_RS10340;product=type II toxin-antitoxin system RatA family toxin;protein_id=WP_038270167.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2494773 2495027 . + . ID=gene-LPH40_RS10345;Name=LPH40_RS10345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10345;old_locus_tag=LPH40_10345 NZ_CP087685.1 Protein Homology CDS 2494773 2495027 . + 0 ID=cds-WP_038270165.1;Parent=gene-LPH40_RS10345;Dbxref=Genbank:WP_038270165.1;Name=WP_038270165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089800.1;locus_tag=LPH40_RS10345;product=RnfH family protein;protein_id=WP_038270165.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2495056 2495448 . - . ID=gene-LPH40_RS10350;Name=LPH40_RS10350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10350;old_locus_tag=LPH40_10350 NZ_CP087685.1 Protein Homology CDS 2495056 2495448 . - 0 ID=cds-WP_038270157.1;Parent=gene-LPH40_RS10350;Dbxref=Genbank:WP_038270157.1;Name=WP_038270157.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085841.1;locus_tag=LPH40_RS10350;product=outer membrane protein assembly factor BamE;protein_id=WP_038270157.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2495561 2495971 . + . ID=gene-LPH40_RS10355;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=LPH40_RS10355;old_locus_tag=LPH40_10355 NZ_CP087685.1 Protein Homology CDS 2495561 2495971 . + 0 ID=cds-WP_038270156.1;Parent=gene-LPH40_RS10355;Dbxref=Genbank:WP_038270156.1;Name=WP_038270156.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=fur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804358.1;locus_tag=LPH40_RS10355;product=ferric iron uptake transcriptional regulator;protein_id=WP_038270156.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2496107 2497780 . - . ID=gene-LPH40_RS10360;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=LPH40_RS10360;old_locus_tag=LPH40_10360 NZ_CP087685.1 Protein Homology CDS 2496107 2497780 . - 0 ID=cds-WP_038270155.1;Parent=gene-LPH40_RS10360;Dbxref=Genbank:WP_038270155.1;Name=WP_038270155.1;Ontology_term=GO:0006281,GO:0006310,GO:0005524;gbkey=CDS;gene=recN;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894789.1;locus_tag=LPH40_RS10360;product=DNA repair protein RecN;protein_id=WP_038270155.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2497899 2498948 . + . ID=gene-LPH40_RS10365;Name=hrcA;gbkey=Gene;gene=hrcA;gene_biotype=protein_coding;locus_tag=LPH40_RS10365;old_locus_tag=LPH40_10365 NZ_CP087685.1 Protein Homology CDS 2497899 2498948 . + 0 ID=cds-WP_038270316.1;Parent=gene-LPH40_RS10365;Dbxref=Genbank:WP_038270316.1;Name=WP_038270316.1;Ontology_term=GO:0009408,GO:0005737;gbkey=CDS;gene=hrcA;go_component=cytoplasm|0005737||IEA;go_process=response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237768.1;locus_tag=LPH40_RS10365;product=heat-inducible transcriptional repressor HrcA;protein_id=WP_038270316.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2499069 2499587 . + . ID=gene-LPH40_RS10370;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=LPH40_RS10370;old_locus_tag=LPH40_10370 NZ_CP087685.1 Protein Homology CDS 2499069 2499587 . + 0 ID=cds-WP_038270153.1;Parent=gene-LPH40_RS10370;Dbxref=Genbank:WP_038270153.1;Name=WP_038270153.1;gbkey=CDS;gene=grpE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483633.1;locus_tag=LPH40_RS10370;product=nucleotide exchange factor GrpE;protein_id=WP_038270153.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2499719 2501632 . + . ID=gene-LPH40_RS10375;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=LPH40_RS10375;old_locus_tag=LPH40_10375 NZ_CP087685.1 Protein Homology CDS 2499719 2501632 . + 0 ID=cds-WP_038270151.1;Parent=gene-LPH40_RS10375;Dbxref=Genbank:WP_038270151.1;Name=WP_038270151.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887;gbkey=CDS;gene=dnaK;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380232.1;locus_tag=LPH40_RS10375;product=molecular chaperone DnaK;protein_id=WP_038270151.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2501768 2502880 . + . ID=gene-LPH40_RS10380;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;locus_tag=LPH40_RS10380;old_locus_tag=LPH40_10380 NZ_CP087685.1 Protein Homology CDS 2501768 2502880 . + 0 ID=cds-WP_114867099.1;Parent=gene-LPH40_RS10380;Dbxref=Genbank:WP_114867099.1;Name=WP_114867099.1;Ontology_term=GO:0006457,GO:0009408,GO:0005515;gbkey=CDS;gene=dnaJ;go_function=protein binding|0005515||IEA;go_process=protein folding|0006457||IEA,response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438731.1;locus_tag=LPH40_RS10380;product=molecular chaperone DnaJ;protein_id=WP_114867099.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2503185 2504306 . + . ID=gene-LPH40_RS10385;Name=LPH40_RS10385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10385;old_locus_tag=LPH40_10385 NZ_CP087685.1 Protein Homology CDS 2503185 2504306 . + 0 ID=cds-WP_038270314.1;Parent=gene-LPH40_RS10385;Dbxref=Genbank:WP_038270314.1;Name=WP_038270314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098075.1;locus_tag=LPH40_RS10385;product=prephenate dehydrogenase;protein_id=WP_038270314.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2505664 2506377 . + . ID=gene-LPH40_RS10390;Name=LPH40_RS10390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10390;old_locus_tag=LPH40_10390 NZ_CP087685.1 Protein Homology CDS 2505664 2506377 . + 0 ID=cds-WP_038270312.1;Parent=gene-LPH40_RS10390;Dbxref=Genbank:WP_038270312.1;Name=WP_038270312.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019661106.1;locus_tag=LPH40_RS10390;product=response regulator transcription factor;protein_id=WP_038270312.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2506686 2507066 . + . ID=gene-LPH40_RS10395;Name=LPH40_RS10395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10395;old_locus_tag=LPH40_10395 NZ_CP087685.1 Protein Homology CDS 2506686 2507066 . + 0 ID=cds-WP_038270150.1;Parent=gene-LPH40_RS10395;Dbxref=Genbank:WP_038270150.1;Name=WP_038270150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811893.1;locus_tag=LPH40_RS10395;product=diacylglycerol kinase;protein_id=WP_038270150.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2507153 2508058 . + . ID=gene-LPH40_RS10400;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=LPH40_RS10400;old_locus_tag=LPH40_10400 NZ_CP087685.1 Protein Homology CDS 2507153 2508058 . + 0 ID=cds-WP_038270310.1;Parent=gene-LPH40_RS10400;Dbxref=Genbank:WP_038270310.1;Name=WP_038270310.1;Ontology_term=GO:0009249,GO:0008961,GO:0016020;gbkey=CDS;gene=lgt;go_component=membrane|0016020||IEA;go_function=phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity|0008961||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085861.1;locus_tag=LPH40_RS10400;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_038270310.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2508055 2508849 . + . ID=gene-LPH40_RS10405;Name=LPH40_RS10405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10405;old_locus_tag=LPH40_10405 NZ_CP087685.1 Protein Homology CDS 2508055 2508849 . + 0 ID=cds-WP_038270148.1;Parent=gene-LPH40_RS10405;Dbxref=Genbank:WP_038270148.1;Name=WP_038270148.1;Ontology_term=GO:0006231,GO:0004799;gbkey=CDS;go_function=thymidylate synthase activity|0004799||IEA;go_process=dTMP biosynthetic process|0006231||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260172.1;locus_tag=LPH40_RS10405;product=thymidylate synthase;protein_id=WP_038270148.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2509172 2509672 . + . ID=gene-LPH40_RS10410;Name=LPH40_RS10410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10410;old_locus_tag=LPH40_10410 NZ_CP087685.1 Protein Homology CDS 2509172 2509672 . + 0 ID=cds-WP_038270308.1;Parent=gene-LPH40_RS10410;Dbxref=Genbank:WP_038270308.1;Name=WP_038270308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018974382.1;locus_tag=LPH40_RS10410;product=dihydrofolate reductase;protein_id=WP_038270308.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2510053 2510388 . - . ID=gene-LPH40_RS10415;Name=LPH40_RS10415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10415;old_locus_tag=LPH40_10415 NZ_CP087685.1 Protein Homology CDS 2510053 2510388 . - 0 ID=cds-WP_230428281.1;Parent=gene-LPH40_RS10415;Dbxref=Genbank:WP_230428281.1;Name=WP_230428281.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013676.2;locus_tag=LPH40_RS10415;product=Tn3 family transposase;protein_id=WP_230428281.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2510507 2510695 . - . ID=gene-LPH40_RS10420;Name=LPH40_RS10420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10420;old_locus_tag=LPH40_10420 NZ_CP087685.1 Protein Homology CDS 2510507 2510695 . - 0 ID=cds-WP_230428200.1;Parent=gene-LPH40_RS10420;Dbxref=Genbank:WP_230428200.1;Name=WP_230428200.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013676.2;locus_tag=LPH40_RS10420;product=transposase;protein_id=WP_230428200.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2511524 2512216 . - . ID=gene-LPH40_RS10425;Name=LPH40_RS10425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10425;old_locus_tag=LPH40_10425 NZ_CP087685.1 Protein Homology CDS 2511524 2512216 . - 0 ID=cds-WP_200866177.1;Parent=gene-LPH40_RS10425;Dbxref=Genbank:WP_200866177.1;Name=WP_200866177.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: protein motif:HMM:NF012301.2;locus_tag=LPH40_RS10425;product=response regulator;protein_id=WP_200866177.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2512213 2514891 . - . ID=gene-LPH40_RS10430;Name=LPH40_RS10430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10430;old_locus_tag=LPH40_10430 NZ_CP087685.1 Protein Homology CDS 2512213 2514891 . - 0 ID=cds-WP_038270144.1;Parent=gene-LPH40_RS10430;Dbxref=Genbank:WP_038270144.1;Name=WP_038270144.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014728.2;locus_tag=LPH40_RS10430;product=sensor histidine kinase KdpD;protein_id=WP_038270144.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2514888 2515472 . - . ID=gene-LPH40_RS10435;Name=kdpC;gbkey=Gene;gene=kdpC;gene_biotype=protein_coding;locus_tag=LPH40_RS10435;old_locus_tag=LPH40_10435 NZ_CP087685.1 Protein Homology CDS 2514888 2515472 . - 0 ID=cds-WP_038270142.1;Parent=gene-LPH40_RS10435;Dbxref=Genbank:WP_038270142.1;Name=WP_038270142.1;Ontology_term=GO:0006813,GO:0008556,GO:0016020;gbkey=CDS;gene=kdpC;go_component=membrane|0016020||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007807711.1;locus_tag=LPH40_RS10435;product=potassium-transporting ATPase subunit KdpC;protein_id=WP_038270142.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2515484 2517514 . - . ID=gene-LPH40_RS10440;Name=kdpB;gbkey=Gene;gene=kdpB;gene_biotype=protein_coding;locus_tag=LPH40_RS10440;old_locus_tag=LPH40_10440 NZ_CP087685.1 Protein Homology CDS 2515484 2517514 . - 0 ID=cds-WP_038270140.1;Parent=gene-LPH40_RS10440;Dbxref=Genbank:WP_038270140.1;Name=WP_038270140.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpB;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018973802.1;locus_tag=LPH40_RS10440;product=potassium-transporting ATPase subunit KdpB;protein_id=WP_038270140.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2517530 2519233 . - . ID=gene-LPH40_RS10445;Name=kdpA;gbkey=Gene;gene=kdpA;gene_biotype=protein_coding;locus_tag=LPH40_RS10445;old_locus_tag=LPH40_10445 NZ_CP087685.1 Protein Homology CDS 2517530 2519233 . - 0 ID=cds-WP_038270138.1;Parent=gene-LPH40_RS10445;Dbxref=Genbank:WP_038270138.1;Name=WP_038270138.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpA;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017461263.1;locus_tag=LPH40_RS10445;product=potassium-transporting ATPase subunit KdpA;protein_id=WP_038270138.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2519247 2519336 . - . ID=gene-LPH40_RS10450;Name=kdpF;gbkey=Gene;gene=kdpF;gene_biotype=protein_coding;locus_tag=LPH40_RS10450;old_locus_tag=LPH40_10450 NZ_CP087685.1 Protein Homology CDS 2519247 2519336 . - 0 ID=cds-WP_038270136.1;Parent=gene-LPH40_RS10450;Dbxref=Genbank:WP_038270136.1;Name=WP_038270136.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpF;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007681729.1;locus_tag=LPH40_RS10450;product=K(+)-transporting ATPase subunit F;protein_id=WP_038270136.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2519442 2520299 . - . ID=gene-LPH40_RS10455;Name=LPH40_RS10455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10455;old_locus_tag=LPH40_10455 NZ_CP087685.1 Protein Homology CDS 2519442 2520299 . - 0 ID=cds-WP_230430682.1;Parent=gene-LPH40_RS10455;Dbxref=Genbank:WP_230430682.1;Name=WP_230430682.1;Ontology_term=GO:0015288;gbkey=CDS;go_function=porin activity|0015288||IEA;inference=COORDINATES: protein motif:HMM:TIGR02001.1;locus_tag=LPH40_RS10455;product=TorF family putative porin;protein_id=WP_230430682.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2521952 2522833 . - . ID=gene-LPH40_RS10460;Name=LPH40_RS10460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10460;old_locus_tag=LPH40_10460 NZ_CP087685.1 Protein Homology CDS 2521952 2522833 . - 0 ID=cds-WP_038270133.1;Parent=gene-LPH40_RS10460;Dbxref=Genbank:WP_038270133.1;Name=WP_038270133.1;Ontology_term=GO:0008803;gbkey=CDS;go_function=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity|0008803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852663.1;locus_tag=LPH40_RS10460;product=symmetrical bis(5'-nucleosyl)-tetraphosphatase;protein_id=WP_038270133.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2522847 2523230 . - . ID=gene-LPH40_RS10465;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=LPH40_RS10465;old_locus_tag=LPH40_10465 NZ_CP087685.1 Protein Homology CDS 2522847 2523230 . - 0 ID=cds-WP_038270131.1;Parent=gene-LPH40_RS10465;Dbxref=Genbank:WP_038270131.1;Name=WP_038270131.1;gbkey=CDS;gene=apaG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894598.1;locus_tag=LPH40_RS10465;product=Co2+/Mg2+ efflux protein ApaG;protein_id=WP_038270131.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2523267 2524064 . - . ID=gene-LPH40_RS10470;Name=rsmA;gbkey=Gene;gene=rsmA;gene_biotype=protein_coding;locus_tag=LPH40_RS10470;old_locus_tag=LPH40_10470 NZ_CP087685.1 Protein Homology CDS 2523267 2524064 . - 0 ID=cds-WP_038270130.1;Parent=gene-LPH40_RS10470;Dbxref=Genbank:WP_038270130.1;Name=WP_038270130.1;Ontology_term=GO:0000179;gbkey=CDS;gene=rsmA;go_function=rRNA (adenine-N6%2CN6-)-dimethyltransferase activity|0000179||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894597.1;locus_tag=LPH40_RS10470;product=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA;protein_id=WP_038270130.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2525214 2525846 . - . ID=gene-LPH40_RS10475;Name=rnt;gbkey=Gene;gene=rnt;gene_biotype=protein_coding;locus_tag=LPH40_RS10475;old_locus_tag=LPH40_10475 NZ_CP087685.1 Protein Homology CDS 2525214 2525846 . - 0 ID=cds-WP_038270127.1;Parent=gene-LPH40_RS10475;Dbxref=Genbank:WP_038270127.1;Name=WP_038270127.1;Ontology_term=GO:0006364,GO:0042780,GO:0016896;gbkey=CDS;gene=rnt;go_function=exoribonuclease activity%2C producing 5'-phosphomonoesters|0016896||IEA;go_process=rRNA processing|0006364||IEA,tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086100.1;locus_tag=LPH40_RS10475;product=ribonuclease T;protein_id=WP_038270127.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2526092 2526802 . - . ID=gene-LPH40_RS10480;Name=phoU;gbkey=Gene;gene=phoU;gene_biotype=protein_coding;locus_tag=LPH40_RS10480;old_locus_tag=LPH40_10480 NZ_CP087685.1 Protein Homology CDS 2526092 2526802 . - 0 ID=cds-WP_038270125.1;Parent=gene-LPH40_RS10480;Dbxref=Genbank:WP_038270125.1;Name=WP_038270125.1;Ontology_term=GO:0051049,GO:0003700;gbkey=CDS;gene=phoU;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transport|0051049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894594.1;locus_tag=LPH40_RS10480;product=phosphate signaling complex protein PhoU;protein_id=WP_038270125.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2526821 2527651 . - . ID=gene-LPH40_RS10485;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=LPH40_RS10485;old_locus_tag=LPH40_10485 NZ_CP087685.1 Protein Homology CDS 2526821 2527651 . - 0 ID=cds-WP_038270123.1;Parent=gene-LPH40_RS10485;Dbxref=Genbank:WP_038270123.1;Name=WP_038270123.1;Ontology_term=GO:0005524,GO:0015415,GO:0009898,GO:0055052;gbkey=CDS;gene=pstB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237787.1;locus_tag=LPH40_RS10485;product=phosphate ABC transporter ATP-binding protein PstB;protein_id=WP_038270123.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2527672 2528535 . - . ID=gene-LPH40_RS10490;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=LPH40_RS10490;old_locus_tag=LPH40_10490 NZ_CP087685.1 Protein Homology CDS 2527672 2528535 . - 0 ID=cds-WP_038270121.1;Parent=gene-LPH40_RS10490;Dbxref=Genbank:WP_038270121.1;Name=WP_038270121.1;Ontology_term=GO:0015415,GO:0005886,GO:0055052;gbkey=CDS;gene=pstA;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155848.1;locus_tag=LPH40_RS10490;product=phosphate ABC transporter permease PstA;protein_id=WP_038270121.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2528535 2529509 . - . ID=gene-LPH40_RS10495;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=LPH40_RS10495;old_locus_tag=LPH40_10495 NZ_CP087685.1 Protein Homology CDS 2528535 2529509 . - 0 ID=cds-WP_038270116.1;Parent=gene-LPH40_RS10495;Dbxref=Genbank:WP_038270116.1;Name=WP_038270116.1;Ontology_term=GO:0015415,GO:0005886,GO:0055052;gbkey=CDS;gene=pstC;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572163.1;locus_tag=LPH40_RS10495;product=phosphate ABC transporter permease subunit PstC;protein_id=WP_038270116.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2529621 2530715 . - . ID=gene-LPH40_RS10500;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=LPH40_RS10500;old_locus_tag=LPH40_10500 NZ_CP087685.1 Protein Homology CDS 2529621 2530715 . - 0 ID=cds-WP_038270114.1;Parent=gene-LPH40_RS10500;Dbxref=Genbank:WP_038270114.1;Name=WP_038270114.1;Ontology_term=GO:0015415,GO:0042301,GO:0009897,GO:0030288,GO:0055052;gbkey=CDS;gene=pstS;go_component=external side of plasma membrane|0009897||IEA,outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA,phosphate ion binding|0042301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966222.1;locus_tag=LPH40_RS10500;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=WP_038270114.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2531193 2532887 . - . ID=gene-LPH40_RS10505;Name=LPH40_RS10505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10505;old_locus_tag=LPH40_10505 NZ_CP087685.1 Protein Homology CDS 2531193 2532887 . - 0 ID=cds-WP_038270112.1;Parent=gene-LPH40_RS10505;Dbxref=Genbank:WP_038270112.1;Name=WP_038270112.1;Ontology_term=GO:0006813,GO:0008324,GO:0015299,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=cation transmembrane transporter activity|0008324||IEA,solute:proton antiporter activity|0015299||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088642.1;locus_tag=LPH40_RS10505;product=Kef family K(+) transporter;protein_id=WP_038270112.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2533602 2535965 . - . ID=gene-LPH40_RS10510;Name=LPH40_RS10510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10510;old_locus_tag=LPH40_10510 NZ_CP087685.1 Protein Homology CDS 2533602 2535965 . - 0 ID=cds-WP_038270110.1;Parent=gene-LPH40_RS10510;Dbxref=Genbank:WP_038270110.1;Name=WP_038270110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086090.1;locus_tag=LPH40_RS10510;product=TonB-dependent receptor;protein_id=WP_038270110.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2537299 2537970 . + . ID=gene-LPH40_RS10515;Name=LPH40_RS10515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10515;old_locus_tag=LPH40_10515 NZ_CP087685.1 Protein Homology CDS 2537299 2537970 . + 0 ID=cds-WP_038270092.1;Parent=gene-LPH40_RS10515;Dbxref=Genbank:WP_038270092.1;Name=WP_038270092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088644.1;locus_tag=LPH40_RS10515;product=DsbA family oxidoreductase;protein_id=WP_038270092.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2538061 2540336 . - . ID=gene-LPH40_RS10520;Name=LPH40_RS10520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS10520;old_locus_tag=LPH40_10520;pseudo=true NZ_CP087685.1 Protein Homology CDS 2538061 2540336 . - 0 ID=cds-LPH40_RS10520;Parent=gene-LPH40_RS10520;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097995.1;locus_tag=LPH40_RS10520;product=TonB-dependent receptor;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2540489 2542426 . + . ID=gene-LPH40_RS10525;Name=LPH40_RS10525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10525;old_locus_tag=LPH40_10525 NZ_CP087685.1 Protein Homology CDS 2540489 2542426 . + 0 ID=cds-WP_038270089.1;Parent=gene-LPH40_RS10525;Dbxref=Genbank:WP_038270089.1;Name=WP_038270089.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924596.1;locus_tag=LPH40_RS10525;product=ATP-binding cassette domain-containing protein;protein_id=WP_038270089.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2544181 2544254 . - . ID=gene-LPH40_RS10530;Name=LPH40_RS10530;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS10530;old_locus_tag=LPH40_10530 NZ_CP087685.1 tRNAscan-SE tRNA 2544181 2544254 . - . ID=rna-LPH40_RS10530;Parent=gene-LPH40_RS10530;anticodon=(pos:complement(2544220..2544222));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS10530;product=tRNA-Cys NZ_CP087685.1 tRNAscan-SE exon 2544181 2544254 . - . ID=exon-LPH40_RS10530-1;Parent=rna-LPH40_RS10530;anticodon=(pos:complement(2544220..2544222));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS10530;product=tRNA-Cys NZ_CP087685.1 RefSeq gene 2544325 2544400 . - . ID=gene-LPH40_RS10535;Name=LPH40_RS10535;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS10535;old_locus_tag=LPH40_10535 NZ_CP087685.1 tRNAscan-SE tRNA 2544325 2544400 . - . ID=rna-LPH40_RS10535;Parent=gene-LPH40_RS10535;anticodon=(pos:complement(2544365..2544367));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS10535;product=tRNA-Gly NZ_CP087685.1 tRNAscan-SE exon 2544325 2544400 . - . ID=exon-LPH40_RS10535-1;Parent=rna-LPH40_RS10535;anticodon=(pos:complement(2544365..2544367));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS10535;product=tRNA-Gly NZ_CP087685.1 RefSeq gene 2544437 2545072 . - . ID=gene-LPH40_RS10540;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=LPH40_RS10540;old_locus_tag=LPH40_10540 NZ_CP087685.1 Protein Homology CDS 2544437 2545072 . - 0 ID=cds-WP_038270086.1;Parent=gene-LPH40_RS10540;Dbxref=Genbank:WP_038270086.1;Name=WP_038270086.1;Ontology_term=GO:0008654,GO:0008444;gbkey=CDS;gene=pgsA;go_function=CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|0008444||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894757.1;locus_tag=LPH40_RS10540;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_038270086.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2545072 2546934 . - . ID=gene-LPH40_RS10545;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=LPH40_RS10545;old_locus_tag=LPH40_10545 NZ_CP087685.1 Protein Homology CDS 2545072 2546934 . - 0 ID=cds-WP_038270083.1;Parent=gene-LPH40_RS10545;Dbxref=Genbank:WP_038270083.1;Name=WP_038270083.1;Ontology_term=GO:0006289,GO:0009381,GO:0009380;gbkey=CDS;gene=uvrC;go_component=excinuclease repair complex|0009380||IEA;go_function=excinuclease ABC activity|0009381||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098050.1;locus_tag=LPH40_RS10545;product=excinuclease ABC subunit UvrC;protein_id=WP_038270083.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2547768 2548232 . - . ID=gene-LPH40_RS10550;Name=LPH40_RS10550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10550;old_locus_tag=LPH40_10550 NZ_CP087685.1 Protein Homology CDS 2547768 2548232 . - 0 ID=cds-WP_038270078.1;Parent=gene-LPH40_RS10550;Dbxref=Genbank:WP_038270078.1;Name=WP_038270078.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916712.1;locus_tag=LPH40_RS10550;product=low molecular weight phosphotyrosine protein phosphatase;protein_id=WP_038270078.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2548229 2549002 . - . ID=gene-LPH40_RS10555;Name=kdsB;gbkey=Gene;gene=kdsB;gene_biotype=protein_coding;locus_tag=LPH40_RS10555;old_locus_tag=LPH40_10555 NZ_CP087685.1 Protein Homology CDS 2548229 2549002 . - 0 ID=cds-WP_038270076.1;Parent=gene-LPH40_RS10555;Dbxref=Genbank:WP_038270076.1;Name=WP_038270076.1;Ontology_term=GO:0009244,GO:0008690;gbkey=CDS;gene=kdsB;go_function=3-deoxy-manno-octulosonate cytidylyltransferase activity|0008690||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852623.1;locus_tag=LPH40_RS10555;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_038270076.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2550009 2550896 . + . ID=gene-LPH40_RS10560;Name=apbC;gbkey=Gene;gene=apbC;gene_biotype=protein_coding;locus_tag=LPH40_RS10560;old_locus_tag=LPH40_10560 NZ_CP087685.1 Protein Homology CDS 2550009 2550896 . + 0 ID=cds-WP_051482243.1;Parent=gene-LPH40_RS10560;Dbxref=Genbank:WP_051482243.1;Name=WP_051482243.1;Ontology_term=GO:0016226,GO:0005524,GO:0016887,GO:0051536;gbkey=CDS;gene=apbC;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852622.1;locus_tag=LPH40_RS10560;product=iron-sulfur cluster carrier protein ApbC;protein_id=WP_051482243.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2551057 2552364 . - . ID=gene-LPH40_RS10565;Name=hemL;gbkey=Gene;gene=hemL;gene_biotype=protein_coding;locus_tag=LPH40_RS10565;old_locus_tag=LPH40_10565 NZ_CP087685.1 Protein Homology CDS 2551057 2552364 . - 0 ID=cds-WP_038270070.1;Parent=gene-LPH40_RS10565;Dbxref=Genbank:WP_038270070.1;Name=WP_038270070.1;Ontology_term=GO:0006779,GO:0042286,GO:0005737;gbkey=CDS;gene=hemL;go_component=cytoplasm|0005737||IEA;go_function=glutamate-1-semialdehyde 2%2C1-aminomutase activity|0042286||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085701.1;locus_tag=LPH40_RS10565;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=WP_038270070.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2553376 2554224 . + . ID=gene-LPH40_RS10570;Name=LPH40_RS10570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10570;old_locus_tag=LPH40_10570 NZ_CP087685.1 Protein Homology CDS 2553376 2554224 . + 0 ID=cds-WP_081755396.1;Parent=gene-LPH40_RS10570;Dbxref=Genbank:WP_081755396.1;Name=WP_081755396.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340307.1;locus_tag=LPH40_RS10570;product=DNA/RNA non-specific endonuclease;protein_id=WP_081755396.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2554139 2555143 . - . ID=gene-LPH40_RS10575;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;locus_tag=LPH40_RS10575;old_locus_tag=LPH40_10575 NZ_CP087685.1 Protein Homology CDS 2554139 2555143 . - 0 ID=cds-WP_038270065.1;Parent=gene-LPH40_RS10575;Dbxref=Genbank:WP_038270065.1;Name=WP_038270065.1;Ontology_term=GO:0033014,GO:0003824,GO:0004655,GO:0046872;gbkey=CDS;gene=hemB;go_function=catalytic activity|0003824||IEA,porphobilinogen synthase activity|0004655||IEA,metal ion binding|0046872||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852618.1;locus_tag=LPH40_RS10575;product=porphobilinogen synthase;protein_id=WP_038270065.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2555856 2556326 . + . ID=gene-LPH40_RS10580;Name=LPH40_RS10580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10580;old_locus_tag=LPH40_10580 NZ_CP087685.1 Protein Homology CDS 2555856 2556326 . + 0 ID=cds-WP_081755393.1;Parent=gene-LPH40_RS10580;Dbxref=Genbank:WP_081755393.1;Name=WP_081755393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808472.1;locus_tag=LPH40_RS10580;product=hypothetical protein;protein_id=WP_081755393.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2556544 2557329 . + . ID=gene-LPH40_RS10585;Name=pcaD;gbkey=Gene;gene=pcaD;gene_biotype=protein_coding;locus_tag=LPH40_RS10585;old_locus_tag=LPH40_10585 NZ_CP087685.1 Protein Homology CDS 2556544 2557329 . + 0 ID=cds-WP_038270300.1;Parent=gene-LPH40_RS10585;Dbxref=Genbank:WP_038270300.1;Name=WP_038270300.1;Ontology_term=GO:0042952,GO:0047570;gbkey=CDS;gene=pcaD;go_function=3-oxoadipate enol-lactonase activity|0047570||IEA;go_process=beta-ketoadipate pathway|0042952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346074.1;locus_tag=LPH40_RS10585;product=3-oxoadipate enol-lactonase;protein_id=WP_038270300.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2557407 2558189 . - . ID=gene-LPH40_RS10590;Name=LPH40_RS10590;end_range=2558189,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS10590;old_locus_tag=LPH40_10590;partial=true;pseudo=true NZ_CP087685.1 Protein Homology CDS 2557407 2558189 . - 0 ID=cds-LPH40_RS10590;Parent=gene-LPH40_RS10590;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006355,GO:0003677;end_range=2558189,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017908152.1;locus_tag=LPH40_RS10590;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2558700 2559131 . - . ID=gene-LPH40_RS10595;Name=LPH40_RS10595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10595;old_locus_tag=LPH40_10595 NZ_CP087685.1 GeneMarkS-2+ CDS 2558700 2559131 . - 0 ID=cds-WP_038270055.1;Parent=gene-LPH40_RS10595;Dbxref=Genbank:WP_038270055.1;Name=WP_038270055.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10595;product=hypothetical protein;protein_id=WP_038270055.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2559436 2561325 . - . ID=gene-LPH40_RS10600;Name=mnmG;gbkey=Gene;gene=mnmG;gene_biotype=protein_coding;locus_tag=LPH40_RS10600;old_locus_tag=LPH40_10600 NZ_CP087685.1 Protein Homology CDS 2559436 2561325 . - 0 ID=cds-WP_038270052.1;Parent=gene-LPH40_RS10600;Dbxref=Genbank:WP_038270052.1;Name=WP_038270052.1;Ontology_term=GO:0002098,GO:0008033,GO:0050660;gbkey=CDS;gene=mnmG;go_function=flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA wobble uridine modification|0002098||IEA,tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437137.1;locus_tag=LPH40_RS10600;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG;protein_id=WP_038270052.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2562605 2562772 . + . ID=gene-LPH40_RS10605;Name=LPH40_RS10605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10605;old_locus_tag=LPH40_10605 NZ_CP087685.1 GeneMarkS-2+ CDS 2562605 2562772 . + 0 ID=cds-WP_160165115.1;Parent=gene-LPH40_RS10605;Dbxref=Genbank:WP_160165115.1;Name=WP_160165115.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10605;product=hypothetical protein;protein_id=WP_160165115.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2562929 2563525 . + . ID=gene-LPH40_RS10610;Name=LPH40_RS10610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10610;old_locus_tag=LPH40_10610 NZ_CP087685.1 Protein Homology CDS 2562929 2563525 . + 0 ID=cds-WP_230428282.1;Parent=gene-LPH40_RS10610;Dbxref=Genbank:WP_230428282.1;Name=WP_230428282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097781.1;locus_tag=LPH40_RS10610;product=YdcF family protein;protein_id=WP_230428282.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2564510 2565415 . - . ID=gene-LPH40_RS10615;Name=lpxO;gbkey=Gene;gene=lpxO;gene_biotype=protein_coding;locus_tag=LPH40_RS10615;old_locus_tag=LPH40_10615 NZ_CP087685.1 Protein Homology CDS 2564510 2565415 . - 0 ID=cds-WP_038270046.1;Parent=gene-LPH40_RS10615;Dbxref=Genbank:WP_038270046.1;Name=WP_038270046.1;Ontology_term=GO:0018193;gbkey=CDS;gene=lpxO;go_process=peptidyl-amino acid modification|0018193||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014404353.1;locus_tag=LPH40_RS10615;product=lipid A hydroxylase LpxO;protein_id=WP_038270046.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2565491 2566378 . - . ID=gene-LPH40_RS10620;Name=bioC;gbkey=Gene;gene=bioC;gene_biotype=protein_coding;locus_tag=LPH40_RS10620;old_locus_tag=LPH40_10620 NZ_CP087685.1 Protein Homology CDS 2565491 2566378 . - 0 ID=cds-WP_038270294.1;Parent=gene-LPH40_RS10620;Dbxref=Genbank:WP_038270294.1;Name=WP_038270294.1;Ontology_term=GO:0009102,GO:0008171;gbkey=CDS;gene=bioC;go_function=O-methyltransferase activity|0008171||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851129.1;locus_tag=LPH40_RS10620;product=malonyl-ACP O-methyltransferase BioC;protein_id=WP_038270294.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2566773 2566910 . + . ID=gene-LPH40_RS10625;Name=LPH40_RS10625;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS10625;old_locus_tag=LPH40_10625;partial=true;pseudo=true;start_range=.,2566773 NZ_CP087685.1 Protein Homology CDS 2566773 2566910 . + 0 ID=cds-LPH40_RS10625;Parent=gene-LPH40_RS10625;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LPH40_RS10625;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,2566773;transl_table=11 NZ_CP087685.1 RefSeq gene 2567768 2567992 . - . ID=gene-LPH40_RS10630;Name=LPH40_RS10630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10630;old_locus_tag=LPH40_10630 NZ_CP087685.1 Protein Homology CDS 2567768 2567992 . - 0 ID=cds-WP_038270037.1;Parent=gene-LPH40_RS10630;Dbxref=Genbank:WP_038270037.1;Name=WP_038270037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097784.1;locus_tag=LPH40_RS10630;product=hypothetical protein;protein_id=WP_038270037.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2568376 2568936 . + . ID=gene-LPH40_RS10635;Name=LPH40_RS10635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10635;old_locus_tag=LPH40_10635 NZ_CP087685.1 Protein Homology CDS 2568376 2568936 . + 0 ID=cds-WP_162814091.1;Parent=gene-LPH40_RS10635;Dbxref=Genbank:WP_162814091.1;Name=WP_162814091.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: protein motif:HMM:NF013670.2;locus_tag=LPH40_RS10635;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_162814091.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2569089 2569994 . + . ID=gene-LPH40_RS10640;Name=folE2;gbkey=Gene;gene=folE2;gene_biotype=protein_coding;locus_tag=LPH40_RS10640;old_locus_tag=LPH40_10640 NZ_CP087685.1 Protein Homology CDS 2569089 2569994 . + 0 ID=cds-WP_171898079.1;Parent=gene-LPH40_RS10640;Dbxref=Genbank:WP_171898079.1;Name=WP_171898079.1;Ontology_term=GO:0035998,GO:0003933;gbkey=CDS;gene=folE2;go_function=GTP cyclohydrolase activity|0003933||IEA;go_process=7%2C8-dihydroneopterin 3'-triphosphate biosynthetic process|0035998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051138.1;locus_tag=LPH40_RS10640;product=GTP cyclohydrolase FolE2;protein_id=WP_171898079.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2570057 2570617 . + . ID=gene-LPH40_RS10645;Name=LPH40_RS10645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10645;old_locus_tag=LPH40_10645 NZ_CP087685.1 Protein Homology CDS 2570057 2570617 . + 0 ID=cds-WP_038270030.1;Parent=gene-LPH40_RS10645;Dbxref=Genbank:WP_038270030.1;Name=WP_038270030.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382543.1;locus_tag=LPH40_RS10645;product=carbonate dehydratase;protein_id=WP_038270030.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2570813 2573980 . - . ID=gene-LPH40_RS10650;Name=LPH40_RS10650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10650;old_locus_tag=LPH40_10650 NZ_CP087685.1 Protein Homology CDS 2570813 2573980 . - 0 ID=cds-WP_038270028.1;Parent=gene-LPH40_RS10650;Dbxref=Genbank:WP_038270028.1;Name=WP_038270028.1;Ontology_term=GO:0042908,GO:0055085,GO:0015562,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=xenobiotic transport|0042908||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851125.1;locus_tag=LPH40_RS10650;product=multidrug efflux RND transporter permease subunit;protein_id=WP_038270028.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2573995 2575188 . - . ID=gene-LPH40_RS10655;Name=LPH40_RS10655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10655;old_locus_tag=LPH40_10655 NZ_CP087685.1 Protein Homology CDS 2573995 2575188 . - 0 ID=cds-WP_038270025.1;Parent=gene-LPH40_RS10655;Dbxref=Genbank:WP_038270025.1;Name=WP_038270025.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086749.1;locus_tag=LPH40_RS10655;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_038270025.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2576232 2581223 . + . ID=gene-LPH40_RS10660;Name=LPH40_RS10660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10660;old_locus_tag=LPH40_10660 NZ_CP087685.1 Protein Homology CDS 2576232 2581223 . + 0 ID=cds-WP_038270022.1;Parent=gene-LPH40_RS10660;Dbxref=Genbank:WP_038270022.1;Name=WP_038270022.1;Ontology_term=GO:0019551,GO:0004352;gbkey=CDS;go_function=glutamate dehydrogenase (NAD+) activity|0004352||IEA;go_process=glutamate catabolic process to 2-oxoglutarate|0019551||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851123.1;locus_tag=LPH40_RS10660;product=NAD-glutamate dehydrogenase;protein_id=WP_038270022.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2581319 2582086 . + . ID=gene-LPH40_RS10665;Name=LPH40_RS10665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10665;old_locus_tag=LPH40_10665 NZ_CP087685.1 Protein Homology CDS 2581319 2582086 . + 0 ID=cds-WP_038270019.1;Parent=gene-LPH40_RS10665;Dbxref=Genbank:WP_038270019.1;Name=WP_038270019.1;Ontology_term=GO:0006741,GO:0019674,GO:0003951;gbkey=CDS;go_function=NAD+ kinase activity|0003951||IEA;go_process=NADP biosynthetic process|0006741||IEA,NAD metabolic process|0019674||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919766.1;locus_tag=LPH40_RS10665;product=NAD kinase;protein_id=WP_038270019.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2582172 2583131 . + . ID=gene-LPH40_RS10670;Name=LPH40_RS10670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10670;old_locus_tag=LPH40_10670 NZ_CP087685.1 Protein Homology CDS 2582172 2583131 . + 0 ID=cds-WP_038270016.1;Parent=gene-LPH40_RS10670;Dbxref=Genbank:WP_038270016.1;Name=WP_038270016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894542.1;locus_tag=LPH40_RS10670;product=5'-nucleotidase;protein_id=WP_038270016.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2583591 2584049 . - . ID=gene-LPH40_RS10675;Name=LPH40_RS10675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10675;old_locus_tag=LPH40_10675 NZ_CP087685.1 GeneMarkS-2+ CDS 2583591 2584049 . - 0 ID=cds-WP_038270011.1;Parent=gene-LPH40_RS10675;Dbxref=Genbank:WP_038270011.1;Name=WP_038270011.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10675;product=hypothetical protein;protein_id=WP_038270011.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2584780 2585199 . + . ID=gene-LPH40_RS10680;Name=LPH40_RS10680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10680;old_locus_tag=LPH40_10680 NZ_CP087685.1 Protein Homology CDS 2584780 2585199 . + 0 ID=cds-WP_038270292.1;Parent=gene-LPH40_RS10680;Dbxref=Genbank:WP_038270292.1;Name=WP_038270292.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086769.1;locus_tag=LPH40_RS10680;product=cupin domain-containing protein;protein_id=WP_038270292.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2586294 2587352 . - . ID=gene-LPH40_RS10685;Name=LPH40_RS10685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10685;old_locus_tag=LPH40_10685 NZ_CP087685.1 Protein Homology CDS 2586294 2587352 . - 0 ID=cds-WP_051482238.1;Parent=gene-LPH40_RS10685;Dbxref=Genbank:WP_051482238.1;Name=WP_051482238.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894481.1;locus_tag=LPH40_RS10685;product=MBL fold metallo-hydrolase;protein_id=WP_051482238.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2587793 2588479 . - . ID=gene-LPH40_RS10690;Name=LPH40_RS10690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10690;old_locus_tag=LPH40_10690 NZ_CP087685.1 Protein Homology CDS 2587793 2588479 . - 0 ID=cds-WP_038270005.1;Parent=gene-LPH40_RS10690;Dbxref=Genbank:WP_038270005.1;Name=WP_038270005.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996685.1;locus_tag=LPH40_RS10690;product=TIGR02453 family protein;protein_id=WP_038270005.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2588476 2589921 . - . ID=gene-LPH40_RS10695;Name=sbcB;gbkey=Gene;gene=sbcB;gene_biotype=protein_coding;locus_tag=LPH40_RS10695;old_locus_tag=LPH40_10695 NZ_CP087685.1 Protein Homology CDS 2588476 2589921 . - 0 ID=cds-WP_038270002.1;Parent=gene-LPH40_RS10695;Dbxref=Genbank:WP_038270002.1;Name=WP_038270002.1;Ontology_term=GO:0006281,GO:0000175,GO:0003676,GO:0008852;gbkey=CDS;gene=sbcB;go_function=3'-5'-exoribonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA,exodeoxyribonuclease I activity|0008852||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366550.1;locus_tag=LPH40_RS10695;product=exodeoxyribonuclease I;protein_id=WP_038270002.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2590284 2590442 . + . ID=gene-LPH40_RS10700;Name=LPH40_RS10700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10700;old_locus_tag=LPH40_10700 NZ_CP087685.1 GeneMarkS-2+ CDS 2590284 2590442 . + 0 ID=cds-WP_160165114.1;Parent=gene-LPH40_RS10700;Dbxref=Genbank:WP_160165114.1;Name=WP_160165114.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10700;product=hypothetical protein;protein_id=WP_160165114.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2591436 2591648 . + . ID=gene-LPH40_RS10705;Name=LPH40_RS10705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10705;old_locus_tag=LPH40_10705 NZ_CP087685.1 GeneMarkS-2+ CDS 2591436 2591648 . + 0 ID=cds-WP_051482237.1;Parent=gene-LPH40_RS10705;Dbxref=Genbank:WP_051482237.1;Name=WP_051482237.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10705;product=hypothetical protein;protein_id=WP_051482237.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2591666 2591824 . + . ID=gene-LPH40_RS10710;Name=LPH40_RS10710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10710;old_locus_tag=LPH40_10710 NZ_CP087685.1 GeneMarkS-2+ CDS 2591666 2591824 . + 0 ID=cds-WP_230428202.1;Parent=gene-LPH40_RS10710;Dbxref=Genbank:WP_230428202.1;Name=WP_230428202.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10710;product=hypothetical protein;protein_id=WP_230428202.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2592570 2594207 . + . ID=gene-LPH40_RS10715;Name=LPH40_RS10715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10715;old_locus_tag=LPH40_10715 NZ_CP087685.1 Protein Homology CDS 2592570 2594207 . + 0 ID=cds-WP_114867104.1;Parent=gene-LPH40_RS10715;Dbxref=Genbank:WP_114867104.1;Name=WP_114867104.1;Ontology_term=GO:0006814,GO:0006885,GO:1902600,GO:0015385;gbkey=CDS;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504747.1;locus_tag=LPH40_RS10715;product=Na+/H+ antiporter;protein_id=WP_114867104.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2594604 2595152 . + . ID=gene-LPH40_RS10720;Name=LPH40_RS10720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10720;old_locus_tag=LPH40_10720 NZ_CP087685.1 Protein Homology CDS 2594604 2595152 . + 0 ID=cds-WP_038269994.1;Parent=gene-LPH40_RS10720;Dbxref=Genbank:WP_038269994.1;Name=WP_038269994.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452585.1;locus_tag=LPH40_RS10720;product=hypothetical protein;protein_id=WP_038269994.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2595356 2596003 . - . ID=gene-LPH40_RS10725;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=LPH40_RS10725;old_locus_tag=LPH40_10725 NZ_CP087685.1 Protein Homology CDS 2595356 2596003 . - 0 ID=cds-WP_038269991.1;Parent=gene-LPH40_RS10725;Dbxref=Genbank:WP_038269991.1;Name=WP_038269991.1;Ontology_term=GO:0009052,GO:0004751;gbkey=CDS;gene=rpiA;go_function=ribose-5-phosphate isomerase activity|0004751||IEA;go_process=pentose-phosphate shunt%2C non-oxidative branch|0009052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994531.1;locus_tag=LPH40_RS10725;product=ribose-5-phosphate isomerase RpiA;protein_id=WP_038269991.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2596062 2596532 . - . ID=gene-LPH40_RS10730;Name=LPH40_RS10730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10730;old_locus_tag=LPH40_10730 NZ_CP087685.1 Protein Homology CDS 2596062 2596532 . - 0 ID=cds-WP_038269989.1;Parent=gene-LPH40_RS10730;Dbxref=Genbank:WP_038269989.1;Name=WP_038269989.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091182.1;locus_tag=LPH40_RS10730;product=EVE domain-containing protein;protein_id=WP_038269989.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2596529 2597116 . - . ID=gene-LPH40_RS10735;Name=LPH40_RS10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10735;old_locus_tag=LPH40_10735 NZ_CP087685.1 Protein Homology CDS 2596529 2597116 . - 0 ID=cds-WP_038269986.1;Parent=gene-LPH40_RS10735;Dbxref=Genbank:WP_038269986.1;Name=WP_038269986.1;Ontology_term=GO:0006730,GO:0030272;gbkey=CDS;go_function=5-formyltetrahydrofolate cyclo-ligase activity|0030272||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091180.1;locus_tag=LPH40_RS10735;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_038269986.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2598118 2598302 . - . ID=gene-LPH40_RS10740;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=ncRNA;locus_tag=LPH40_RS10740;old_locus_tag=LPH40_10740 NZ_CP087685.1 cmsearch ncRNA 2598118 2598302 . - . ID=rna-LPH40_RS10740;Parent=gene-LPH40_RS10740;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS10740;product=6S RNA NZ_CP087685.1 cmsearch exon 2598118 2598302 . - . ID=exon-LPH40_RS10740-1;Parent=rna-LPH40_RS10740;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LPH40_RS10740;product=6S RNA NZ_CP087685.1 RefSeq gene 2598404 2598703 . - . ID=gene-LPH40_RS10745;Name=LPH40_RS10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10745;old_locus_tag=LPH40_10745 NZ_CP087685.1 Protein Homology CDS 2598404 2598703 . - 0 ID=cds-WP_038269984.1;Parent=gene-LPH40_RS10745;Dbxref=Genbank:WP_038269984.1;Name=WP_038269984.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894469.1;locus_tag=LPH40_RS10745;product=cell division protein ZapA;protein_id=WP_038269984.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2598700 2598921 . - . ID=gene-LPH40_RS10750;Name=LPH40_RS10750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10750;old_locus_tag=LPH40_10750 NZ_CP087685.1 Protein Homology CDS 2598700 2598921 . - 0 ID=cds-WP_038269981.1;Parent=gene-LPH40_RS10750;Dbxref=Genbank:WP_038269981.1;Name=WP_038269981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812462.1;locus_tag=LPH40_RS10750;product=TIGR02449 family protein;protein_id=WP_038269981.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2599080 2599622 . + . ID=gene-LPH40_RS10755;Name=LPH40_RS10755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10755;old_locus_tag=LPH40_10755 NZ_CP087685.1 Protein Homology CDS 2599080 2599622 . + 0 ID=cds-WP_038269978.1;Parent=gene-LPH40_RS10755;Dbxref=Genbank:WP_038269978.1;Name=WP_038269978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156855.1;locus_tag=LPH40_RS10755;product=YecA family protein;protein_id=WP_038269978.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2599631 2600959 . + . ID=gene-LPH40_RS10760;Name=LPH40_RS10760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10760;old_locus_tag=LPH40_10760 NZ_CP087685.1 Protein Homology CDS 2599631 2600959 . + 0 ID=cds-WP_038269975.1;Parent=gene-LPH40_RS10760;Dbxref=Genbank:WP_038269975.1;Name=WP_038269975.1;Ontology_term=GO:0030145,GO:0070006;gbkey=CDS;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085379.1;locus_tag=LPH40_RS10760;product=aminopeptidase P N-terminal domain-containing protein;protein_id=WP_038269975.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2601069 2601620 . - . ID=gene-LPH40_RS10765;Name=LPH40_RS10765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10765;old_locus_tag=LPH40_10765 NZ_CP087685.1 Protein Homology CDS 2601069 2601620 . - 0 ID=cds-WP_038269973.1;Parent=gene-LPH40_RS10765;Dbxref=Genbank:WP_038269973.1;Name=WP_038269973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382549.1;locus_tag=LPH40_RS10765;product=NUDIX hydrolase;protein_id=WP_038269973.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2601897 2602187 . + . ID=gene-LPH40_RS10770;Name=LPH40_RS10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10770;old_locus_tag=LPH40_10770 NZ_CP087685.1 GeneMarkS-2+ CDS 2601897 2602187 . + 0 ID=cds-WP_038269970.1;Parent=gene-LPH40_RS10770;Dbxref=Genbank:WP_038269970.1;Name=WP_038269970.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10770;product=hypothetical protein;protein_id=WP_038269970.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2602696 2603271 . - . ID=gene-LPH40_RS10775;Name=LPH40_RS10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10775;old_locus_tag=LPH40_10775 NZ_CP087685.1 Protein Homology CDS 2602696 2603271 . - 0 ID=cds-WP_038269967.1;Parent=gene-LPH40_RS10775;Dbxref=Genbank:WP_038269967.1;Name=WP_038269967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091174.1;locus_tag=LPH40_RS10775;product=nitroreductase;protein_id=WP_038269967.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2603456 2604838 . + . ID=gene-LPH40_RS10780;Name=LPH40_RS10780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10780;old_locus_tag=LPH40_10780 NZ_CP087685.1 Protein Homology CDS 2603456 2604838 . + 0 ID=cds-WP_081755389.1;Parent=gene-LPH40_RS10780;Dbxref=Genbank:WP_081755389.1;Name=WP_081755389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851083.1;locus_tag=LPH40_RS10780;product=DUF1631 family protein;protein_id=WP_081755389.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2605103 2607367 . + . ID=gene-LPH40_RS10785;Name=LPH40_RS10785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10785;old_locus_tag=LPH40_10785 NZ_CP087685.1 Protein Homology CDS 2605103 2607367 . + 0 ID=cds-WP_038270283.1;Parent=gene-LPH40_RS10785;Dbxref=Genbank:WP_038270283.1;Name=WP_038270283.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017356619.1;locus_tag=LPH40_RS10785;product=DUF1631 domain-containing protein;protein_id=WP_038270283.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2607579 2607998 . - . ID=gene-LPH40_RS10790;Name=LPH40_RS10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10790;old_locus_tag=LPH40_10790 NZ_CP087685.1 Protein Homology CDS 2607579 2607998 . - 0 ID=cds-WP_038269965.1;Parent=gene-LPH40_RS10790;Dbxref=Genbank:WP_038269965.1;Name=WP_038269965.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156959.1;locus_tag=LPH40_RS10790;product=hypothetical protein;protein_id=WP_038269965.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2608129 2608680 . + . ID=gene-LPH40_RS10795;Name=sufT;gbkey=Gene;gene=sufT;gene_biotype=protein_coding;locus_tag=LPH40_RS10795;old_locus_tag=LPH40_10795 NZ_CP087685.1 Protein Homology CDS 2608129 2608680 . + 0 ID=cds-WP_038272808.1;Parent=gene-LPH40_RS10795;Dbxref=Genbank:WP_038272808.1;Name=WP_038272808.1;Ontology_term=GO:0016226,GO:0003674;gbkey=CDS;gene=sufT;go_function=molecular_function|0003674||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488784.1;locus_tag=LPH40_RS10795;product=putative Fe-S cluster assembly protein SufT;protein_id=WP_038272808.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2608739 2609827 . + . ID=gene-LPH40_RS10800;Name=LPH40_RS10800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10800;old_locus_tag=LPH40_10800 NZ_CP087685.1 Protein Homology CDS 2608739 2609827 . + 0 ID=cds-WP_038272810.1;Parent=gene-LPH40_RS10800;Dbxref=Genbank:WP_038272810.1;Name=WP_038272810.1;Ontology_term=GO:0009081,GO:0004084;gbkey=CDS;go_function=branched-chain-amino-acid transaminase activity|0004084||IEA;go_process=branched-chain amino acid metabolic process|0009081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036086.1;locus_tag=LPH40_RS10800;product=branched-chain amino acid aminotransferase;protein_id=WP_038272810.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2609938 2610255 . - . ID=gene-LPH40_RS10805;Name=LPH40_RS10805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10805;old_locus_tag=LPH40_10805 NZ_CP087685.1 GeneMarkS-2+ CDS 2609938 2610255 . - 0 ID=cds-WP_152536663.1;Parent=gene-LPH40_RS10805;Dbxref=Genbank:WP_152536663.1;Name=WP_152536663.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10805;product=hypothetical protein;protein_id=WP_152536663.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2610419 2610760 . - . ID=gene-LPH40_RS10810;Name=LPH40_RS10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10810;old_locus_tag=LPH40_10810 NZ_CP087685.1 GeneMarkS-2+ CDS 2610419 2610760 . - 0 ID=cds-WP_038272812.1;Parent=gene-LPH40_RS10810;Dbxref=Genbank:WP_038272812.1;Name=WP_038272812.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10810;product=hypothetical protein;protein_id=WP_038272812.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2610979 2611251 . - . ID=gene-LPH40_RS10815;Name=fis;gbkey=Gene;gene=fis;gene_biotype=protein_coding;locus_tag=LPH40_RS10815;old_locus_tag=LPH40_10815 NZ_CP087685.1 Protein Homology CDS 2610979 2611251 . - 0 ID=cds-WP_038272815.1;Parent=gene-LPH40_RS10815;Dbxref=Genbank:WP_038272815.1;Name=WP_038272815.1;gbkey=CDS;gene=fis;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091159.1;locus_tag=LPH40_RS10815;product=DNA-binding transcriptional regulator Fis;protein_id=WP_038272815.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2611337 2612026 . - . ID=gene-LPH40_RS10820;Name=LPH40_RS10820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10820;old_locus_tag=LPH40_10820 NZ_CP087685.1 Protein Homology CDS 2611337 2612026 . - 0 ID=cds-WP_038272817.1;Parent=gene-LPH40_RS10820;Dbxref=Genbank:WP_038272817.1;Name=WP_038272817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085492.1;locus_tag=LPH40_RS10820;product=DUF3426 domain-containing protein;protein_id=WP_038272817.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2612078 2612452 . - . ID=gene-LPH40_RS10825;Name=LPH40_RS10825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10825;old_locus_tag=LPH40_10825 NZ_CP087685.1 Protein Homology CDS 2612078 2612452 . - 0 ID=cds-WP_038272819.1;Parent=gene-LPH40_RS10825;Dbxref=Genbank:WP_038272819.1;Name=WP_038272819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607712.1;locus_tag=LPH40_RS10825;product=helix-turn-helix transcriptional regulator;protein_id=WP_038272819.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2612962 2613228 . + . ID=gene-LPH40_RS10830;Name=LPH40_RS10830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10830;old_locus_tag=LPH40_10830 NZ_CP087685.1 GeneMarkS-2+ CDS 2612962 2613228 . + 0 ID=cds-WP_114867105.1;Parent=gene-LPH40_RS10830;Dbxref=Genbank:WP_114867105.1;Name=WP_114867105.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10830;product=hypothetical protein;protein_id=WP_114867105.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2613503 2614732 . + . ID=gene-LPH40_RS10835;Name=LPH40_RS10835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10835;old_locus_tag=LPH40_10835 NZ_CP087685.1 Protein Homology CDS 2613503 2614732 . + 0 ID=cds-WP_038272822.1;Parent=gene-LPH40_RS10835;Dbxref=Genbank:WP_038272822.1;Name=WP_038272822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851076.1;locus_tag=LPH40_RS10835;product=O-antigen ligase;protein_id=WP_038272822.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2614772 2615635 . + . ID=gene-LPH40_RS10840;Name=LPH40_RS10840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10840;old_locus_tag=LPH40_10840 NZ_CP087685.1 Protein Homology CDS 2614772 2615635 . + 0 ID=cds-WP_051482381.1;Parent=gene-LPH40_RS10840;Dbxref=Genbank:WP_051482381.1;Name=WP_051482381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085488.1;locus_tag=LPH40_RS10840;product=glycosyltransferase family 2 protein;protein_id=WP_051482381.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2615632 2616666 . + . ID=gene-LPH40_RS10845;Name=LPH40_RS10845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10845;old_locus_tag=LPH40_10845 NZ_CP087685.1 Protein Homology CDS 2615632 2616666 . + 0 ID=cds-WP_038272823.1;Parent=gene-LPH40_RS10845;Dbxref=Genbank:WP_038272823.1;Name=WP_038272823.1;Ontology_term=GO:0047355,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=CDP-glycerol glycerophosphotransferase activity|0047355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851074.1;locus_tag=LPH40_RS10845;product=CDP-glycerol glycerophosphotransferase family protein;protein_id=WP_038272823.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2617515 2618711 . - . ID=gene-LPH40_RS10850;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=LPH40_RS10850;old_locus_tag=LPH40_10850 NZ_CP087685.1 Protein Homology CDS 2617515 2618711 . - 0 ID=cds-WP_038272824.1;Parent=gene-LPH40_RS10850;Dbxref=Genbank:WP_038272824.1;Name=WP_038272824.1;gbkey=CDS;gene=ribA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851073.1;locus_tag=LPH40_RS10850;product=GTP cyclohydrolase II RibA;protein_id=WP_038272824.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2618803 2618967 . - . ID=gene-LPH40_RS10855;Name=LPH40_RS10855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10855;old_locus_tag=LPH40_10855 NZ_CP087685.1 GeneMarkS-2+ CDS 2618803 2618967 . - 0 ID=cds-WP_160165225.1;Parent=gene-LPH40_RS10855;Dbxref=Genbank:WP_160165225.1;Name=WP_160165225.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10855;product=hypothetical protein;protein_id=WP_160165225.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2621376 2621927 . + . ID=gene-LPH40_RS10860;Name=LPH40_RS10860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10860;old_locus_tag=LPH40_10860 NZ_CP087685.1 Protein Homology CDS 2621376 2621927 . + 0 ID=cds-WP_038272837.1;Parent=gene-LPH40_RS10860;Dbxref=Genbank:WP_038272837.1;Name=WP_038272837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851072.1;locus_tag=LPH40_RS10860;product=TlpA disulfide reductase family protein;protein_id=WP_038272837.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2622237 2623445 . + . ID=gene-LPH40_RS10865;Name=LPH40_RS10865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10865;old_locus_tag=LPH40_10865 NZ_CP087685.1 Protein Homology CDS 2622237 2623445 . + 0 ID=cds-WP_038272829.1;Parent=gene-LPH40_RS10865;Dbxref=Genbank:WP_038272829.1;Name=WP_038272829.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851071.1;locus_tag=LPH40_RS10865;product=hypothetical protein;protein_id=WP_038272829.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2623947 2624267 . - . ID=gene-LPH40_RS10870;Name=LPH40_RS10870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10870;old_locus_tag=LPH40_10870 NZ_CP087685.1 GeneMarkS-2+ CDS 2623947 2624267 . - 0 ID=cds-WP_038272832.1;Parent=gene-LPH40_RS10870;Dbxref=Genbank:WP_038272832.1;Name=WP_038272832.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10870;product=hypothetical protein;protein_id=WP_038272832.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2624339 2625055 . - . ID=gene-LPH40_RS10875;Name=LPH40_RS10875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10875;old_locus_tag=LPH40_10875 NZ_CP087685.1 Protein Homology CDS 2624339 2625055 . - 0 ID=cds-WP_160165226.1;Parent=gene-LPH40_RS10875;Dbxref=Genbank:WP_160165226.1;Name=WP_160165226.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027825.2;locus_tag=LPH40_RS10875;product=portal protein;protein_id=WP_160165226.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2625052 2626158 . - . ID=gene-LPH40_RS10880;Name=LPH40_RS10880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10880;old_locus_tag=LPH40_10880 NZ_CP087685.1 Protein Homology CDS 2625052 2626158 . - 0 ID=cds-WP_114867106.1;Parent=gene-LPH40_RS10880;Dbxref=Genbank:WP_114867106.1;Name=WP_114867106.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016359.2;locus_tag=LPH40_RS10880;product=phage terminase large subunit;protein_id=WP_114867106.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2626155 2626556 . - . ID=gene-LPH40_RS10885;Name=LPH40_RS10885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10885;old_locus_tag=LPH40_10885 NZ_CP087685.1 Protein Homology CDS 2626155 2626556 . - 0 ID=cds-WP_114867107.1;Parent=gene-LPH40_RS10885;Dbxref=Genbank:WP_114867107.1;Name=WP_114867107.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853008.1;locus_tag=LPH40_RS10885;product=lysozyme;protein_id=WP_114867107.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2626809 2627144 . - . ID=gene-LPH40_RS10890;Name=LPH40_RS10890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10890;old_locus_tag=LPH40_10890 NZ_CP087685.1 Protein Homology CDS 2626809 2627144 . - 0 ID=cds-WP_038273322.1;Parent=gene-LPH40_RS10890;Dbxref=Genbank:WP_038273322.1;Name=WP_038273322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085025.1;locus_tag=LPH40_RS10890;product=type II toxin-antitoxin system HicB family antitoxin;protein_id=WP_038273322.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2627141 2627395 . - . ID=gene-LPH40_RS10895;Name=LPH40_RS10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10895;old_locus_tag=LPH40_10895 NZ_CP087685.1 Protein Homology CDS 2627141 2627395 . - 0 ID=cds-WP_038273324.1;Parent=gene-LPH40_RS10895;Dbxref=Genbank:WP_038273324.1;Name=WP_038273324.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089517.1;locus_tag=LPH40_RS10895;product=type II toxin-antitoxin system HicA family toxin;protein_id=WP_038273324.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2627497 2628195 . - . ID=gene-LPH40_RS10900;Name=LPH40_RS10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10900;old_locus_tag=LPH40_10900 NZ_CP087685.1 Protein Homology CDS 2627497 2628195 . - 0 ID=cds-WP_114867108.1;Parent=gene-LPH40_RS10900;Dbxref=Genbank:WP_114867108.1;Name=WP_114867108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852371.1;locus_tag=LPH40_RS10900;product=hypothetical protein;protein_id=WP_114867108.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2628152 2629345 . + . ID=gene-LPH40_RS10905;Name=LPH40_RS10905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10905;old_locus_tag=LPH40_10905 NZ_CP087685.1 GeneMarkS-2+ CDS 2628152 2629345 . + 0 ID=cds-WP_230428203.1;Parent=gene-LPH40_RS10905;Dbxref=Genbank:WP_230428203.1;Name=WP_230428203.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS10905;product=hypothetical protein;protein_id=WP_230428203.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2629349 2629621 . + . ID=gene-LPH40_RS10910;Name=LPH40_RS10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10910;old_locus_tag=LPH40_10910 NZ_CP087685.1 Protein Homology CDS 2629349 2629621 . + 0 ID=cds-WP_114867070.1-3;Parent=gene-LPH40_RS10910;Dbxref=Genbank:WP_114867070.1;Name=WP_114867070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382732.1;locus_tag=LPH40_RS10910;product=VRR-NUC domain-containing protein;protein_id=WP_114867070.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2629623 2629973 . - . ID=gene-LPH40_RS10915;Name=LPH40_RS10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10915;old_locus_tag=LPH40_10915 NZ_CP087685.1 Protein Homology CDS 2629623 2629973 . - 0 ID=cds-WP_114867109.1;Parent=gene-LPH40_RS10915;Dbxref=Genbank:WP_114867109.1;Name=WP_114867109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382639.1;locus_tag=LPH40_RS10915;product=DUF1640 domain-containing protein;protein_id=WP_114867109.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2630049 2631395 . + . ID=gene-LPH40_RS10920;Name=LPH40_RS10920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10920;old_locus_tag=LPH40_10920 NZ_CP087685.1 Protein Homology CDS 2630049 2631395 . + 0 ID=cds-WP_114867110.1;Parent=gene-LPH40_RS10920;Dbxref=Genbank:WP_114867110.1;Name=WP_114867110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085030.1;locus_tag=LPH40_RS10920;product=DEAD/DEAH box helicase;protein_id=WP_114867110.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2631410 2632294 . + . ID=gene-LPH40_RS10925;Name=LPH40_RS10925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10925;old_locus_tag=LPH40_10925 NZ_CP087685.1 Protein Homology CDS 2631410 2632294 . + 0 ID=cds-WP_114867111.1;Parent=gene-LPH40_RS10925;Dbxref=Genbank:WP_114867111.1;Name=WP_114867111.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012360.2;locus_tag=LPH40_RS10925;product=hypothetical protein;protein_id=WP_114867111.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2632358 2632894 . + . ID=gene-LPH40_RS10930;Name=LPH40_RS10930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10930;old_locus_tag=LPH40_10930 NZ_CP087685.1 Protein Homology CDS 2632358 2632894 . + 0 ID=cds-WP_038273354.1-3;Parent=gene-LPH40_RS10930;Dbxref=Genbank:WP_038273354.1;Name=WP_038273354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337723.1;locus_tag=LPH40_RS10930;product=pilin;protein_id=WP_038273354.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2632945 2633181 . + . ID=gene-LPH40_RS10935;Name=LPH40_RS10935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10935;old_locus_tag=LPH40_10935 NZ_CP087685.1 Protein Homology CDS 2632945 2633181 . + 0 ID=cds-WP_069636229.1-2;Parent=gene-LPH40_RS10935;Dbxref=Genbank:WP_069636229.1;Name=WP_069636229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852651.1;locus_tag=LPH40_RS10935;product=DUF4224 domain-containing protein;protein_id=WP_069636229.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2633194 2634255 . + . ID=gene-LPH40_RS10940;Name=LPH40_RS10940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10940;old_locus_tag=LPH40_10940 NZ_CP087685.1 Protein Homology CDS 2633194 2634255 . + 0 ID=cds-WP_038273275.1-2;Parent=gene-LPH40_RS10940;Dbxref=Genbank:WP_038273275.1;Name=WP_038273275.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852652.1;locus_tag=LPH40_RS10940;product=tyrosine-type recombinase/integrase;protein_id=WP_038273275.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2634522 2635286 . - . ID=gene-LPH40_RS10945;Name=gloB;gbkey=Gene;gene=gloB;gene_biotype=protein_coding;locus_tag=LPH40_RS10945;old_locus_tag=LPH40_10945 NZ_CP087685.1 Protein Homology CDS 2634522 2635286 . - 0 ID=cds-WP_038272090.1;Parent=gene-LPH40_RS10945;Dbxref=Genbank:WP_038272090.1;Name=WP_038272090.1;Ontology_term=GO:0019243,GO:0004416;gbkey=CDS;gene=gloB;go_function=hydroxyacylglutathione hydrolase activity|0004416||IEA;go_process=methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione|0019243||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346589.1;locus_tag=LPH40_RS10945;product=hydroxyacylglutathione hydrolase;protein_id=WP_038272090.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2635331 2635945 . + . ID=gene-LPH40_RS10950;Name=LPH40_RS10950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10950;old_locus_tag=LPH40_10950 NZ_CP087685.1 Protein Homology CDS 2635331 2635945 . + 0 ID=cds-WP_230428204.1;Parent=gene-LPH40_RS10950;Dbxref=Genbank:WP_230428204.1;Name=WP_230428204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894608.1;locus_tag=LPH40_RS10950;product=class I SAM-dependent methyltransferase;protein_id=WP_230428204.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2635959 2636411 . + . ID=gene-LPH40_RS10955;Name=rnhA;gbkey=Gene;gene=rnhA;gene_biotype=protein_coding;locus_tag=LPH40_RS10955;old_locus_tag=LPH40_10955 NZ_CP087685.1 Protein Homology CDS 2635959 2636411 . + 0 ID=cds-WP_038272094.1;Parent=gene-LPH40_RS10955;Dbxref=Genbank:WP_038272094.1;Name=WP_038272094.1;Ontology_term=GO:0003676,GO:0004523;gbkey=CDS;gene=rnhA;go_function=nucleic acid binding|0003676||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088617.1;locus_tag=LPH40_RS10955;product=ribonuclease HI;protein_id=WP_038272094.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2636408 2637130 . + . ID=gene-LPH40_RS10960;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=LPH40_RS10960;old_locus_tag=LPH40_10960 NZ_CP087685.1 Protein Homology CDS 2636408 2637130 . + 0 ID=cds-WP_038272095.1;Parent=gene-LPH40_RS10960;Dbxref=Genbank:WP_038272095.1;Name=WP_038272095.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=dnaQ;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894606.1;locus_tag=LPH40_RS10960;product=DNA polymerase III subunit epsilon;protein_id=WP_038272095.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2637181 2637897 . - . ID=gene-LPH40_RS10965;Name=LPH40_RS10965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10965;old_locus_tag=LPH40_10965 NZ_CP087685.1 Protein Homology CDS 2637181 2637897 . - 0 ID=cds-WP_038272160.1;Parent=gene-LPH40_RS10965;Dbxref=Genbank:WP_038272160.1;Name=WP_038272160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483822.1;locus_tag=LPH40_RS10965;product=serine/threonine-protein phosphatase;protein_id=WP_038272160.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2638020 2638110 . + . ID=gene-LPH40_RS10970;Name=LPH40_RS10970;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS10970;old_locus_tag=LPH40_10970 NZ_CP087685.1 tRNAscan-SE tRNA 2638020 2638110 . + . ID=rna-LPH40_RS10970;Parent=gene-LPH40_RS10970;anticodon=(pos:2638054..2638056);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS10970;product=tRNA-Ser NZ_CP087685.1 tRNAscan-SE exon 2638020 2638110 . + . ID=exon-LPH40_RS10970-1;Parent=rna-LPH40_RS10970;anticodon=(pos:2638054..2638056);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS10970;product=tRNA-Ser NZ_CP087685.1 RefSeq gene 2639843 2640250 . + . ID=gene-LPH40_RS10975;Name=LPH40_RS10975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10975;old_locus_tag=LPH40_10975 NZ_CP087685.1 Protein Homology CDS 2639843 2640250 . + 0 ID=cds-WP_038272096.1;Parent=gene-LPH40_RS10975;Dbxref=Genbank:WP_038272096.1;Name=WP_038272096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086118.1;locus_tag=LPH40_RS10975;product=DUF6165 family protein;protein_id=WP_038272096.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2640268 2641320 . - . ID=gene-LPH40_RS10980;Name=LPH40_RS10980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10980;old_locus_tag=LPH40_10980 NZ_CP087685.1 Protein Homology CDS 2640268 2641320 . - 0 ID=cds-WP_038272098.1;Parent=gene-LPH40_RS10980;Dbxref=Genbank:WP_038272098.1;Name=WP_038272098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088625.1;locus_tag=LPH40_RS10980;product=glycosyltransferase family 9 protein;protein_id=WP_038272098.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2641342 2642091 . + . ID=gene-LPH40_RS10985;Name=LPH40_RS10985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10985;old_locus_tag=LPH40_10985 NZ_CP087685.1 Protein Homology CDS 2641342 2642091 . + 0 ID=cds-WP_038272101.1;Parent=gene-LPH40_RS10985;Dbxref=Genbank:WP_038272101.1;Name=WP_038272101.1;Ontology_term=GO:0016773;gbkey=CDS;go_function=phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004088627.1;locus_tag=LPH40_RS10985;product=3-deoxy-D-manno-octulosonic acid kinase;protein_id=WP_038272101.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2642663 2644567 . + . ID=gene-LPH40_RS10990;Name=mdoH;gbkey=Gene;gene=mdoH;gene_biotype=protein_coding;locus_tag=LPH40_RS10990;old_locus_tag=LPH40_10990 NZ_CP087685.1 Protein Homology CDS 2642663 2644567 . + 0 ID=cds-WP_230428205.1;Parent=gene-LPH40_RS10990;Dbxref=Genbank:WP_230428205.1;Name=WP_230428205.1;gbkey=CDS;gene=mdoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084963.1;locus_tag=LPH40_RS10990;product=glucans biosynthesis glucosyltransferase MdoH;protein_id=WP_230428205.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2644600 2645271 . + . ID=gene-LPH40_RS10995;Name=LPH40_RS10995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS10995;old_locus_tag=LPH40_10995 NZ_CP087685.1 Protein Homology CDS 2644600 2645271 . + 0 ID=cds-WP_038272161.1;Parent=gene-LPH40_RS10995;Dbxref=Genbank:WP_038272161.1;Name=WP_038272161.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894120.1;locus_tag=LPH40_RS10995;product=alpha/beta hydrolase;protein_id=WP_038272161.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2645323 2646321 . + . ID=gene-LPH40_RS11000;Name=LPH40_RS11000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11000;old_locus_tag=LPH40_11000 NZ_CP087685.1 Protein Homology CDS 2645323 2646321 . + 0 ID=cds-WP_051482362.1;Parent=gene-LPH40_RS11000;Dbxref=Genbank:WP_051482362.1;Name=WP_051482362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903807.1;locus_tag=LPH40_RS11000;product=sensor histidine kinase;protein_id=WP_051482362.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2646337 2647095 . + . ID=gene-LPH40_RS11005;Name=LPH40_RS11005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11005;old_locus_tag=LPH40_11005 NZ_CP087685.1 Protein Homology CDS 2646337 2647095 . + 0 ID=cds-WP_038272104.1;Parent=gene-LPH40_RS11005;Dbxref=Genbank:WP_038272104.1;Name=WP_038272104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851686.1;locus_tag=LPH40_RS11005;product=LytTR family DNA-binding domain-containing protein;protein_id=WP_038272104.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2647103 2648020 . + . ID=gene-LPH40_RS11010;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=LPH40_RS11010;old_locus_tag=LPH40_11010 NZ_CP087685.1 Protein Homology CDS 2647103 2648020 . + 0 ID=cds-WP_038272106.1;Parent=gene-LPH40_RS11010;Dbxref=Genbank:WP_038272106.1;Name=WP_038272106.1;Ontology_term=GO:0006779,GO:0004418,GO:0005737;gbkey=CDS;gene=hemC;go_component=cytoplasm|0005737||IEA;go_function=hydroxymethylbilane synthase activity|0004418||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894123.1;locus_tag=LPH40_RS11010;product=hydroxymethylbilane synthase;protein_id=WP_038272106.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2648058 2648867 . - . ID=gene-LPH40_RS11015;Name=LPH40_RS11015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11015;old_locus_tag=LPH40_11015 NZ_CP087685.1 Protein Homology CDS 2648058 2648867 . - 0 ID=cds-WP_038272108.1;Parent=gene-LPH40_RS11015;Dbxref=Genbank:WP_038272108.1;Name=WP_038272108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302001.1;locus_tag=LPH40_RS11015;product=DUF481 domain-containing protein;protein_id=WP_038272108.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2649044 2649844 . - . ID=gene-LPH40_RS11020;Name=LPH40_RS11020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11020;old_locus_tag=LPH40_11020 NZ_CP087685.1 GeneMarkS-2+ CDS 2649044 2649844 . - 0 ID=cds-WP_230428206.1;Parent=gene-LPH40_RS11020;Dbxref=Genbank:WP_230428206.1;Name=WP_230428206.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11020;product=hypothetical protein;protein_id=WP_230428206.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2650002 2650900 . + . ID=gene-LPH40_RS11025;Name=LPH40_RS11025;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS11025;old_locus_tag=LPH40_11025;pseudo=true NZ_CP087685.1 Protein Homology CDS 2650002 2650900 . + 0 ID=cds-LPH40_RS11025;Parent=gene-LPH40_RS11025;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451607.1;locus_tag=LPH40_RS11025;product=WYL domain-containing protein;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2651131 2652261 . - . ID=gene-LPH40_RS11030;Name=LPH40_RS11030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11030;old_locus_tag=LPH40_11030 NZ_CP087685.1 Protein Homology CDS 2651131 2652261 . - 0 ID=cds-WP_038272110.1;Parent=gene-LPH40_RS11030;Dbxref=Genbank:WP_038272110.1;Name=WP_038272110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851681.1;locus_tag=LPH40_RS11030;product=PilT/PilU family type 4a pilus ATPase;protein_id=WP_038272110.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2652419 2653453 . - . ID=gene-LPH40_RS11035;Name=LPH40_RS11035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11035;old_locus_tag=LPH40_11035 NZ_CP087685.1 Protein Homology CDS 2652419 2653453 . - 0 ID=cds-WP_038272165.1;Parent=gene-LPH40_RS11035;Dbxref=Genbank:WP_038272165.1;Name=WP_038272165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003084552.1;locus_tag=LPH40_RS11035;product=type IV pilus twitching motility protein PilT;protein_id=WP_038272165.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2655058 2655909 . + . ID=gene-LPH40_RS11040;Name=LPH40_RS11040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11040;old_locus_tag=LPH40_11040 NZ_CP087685.1 Protein Homology CDS 2655058 2655909 . + 0 ID=cds-WP_081755470.1;Parent=gene-LPH40_RS11040;Dbxref=Genbank:WP_081755470.1;Name=WP_081755470.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017356673.1;locus_tag=LPH40_RS11040;product=glycosyltransferase family 2 protein;protein_id=WP_081755470.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2656080 2657333 . + . ID=gene-LPH40_RS11045;Name=LPH40_RS11045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11045;old_locus_tag=LPH40_11045 NZ_CP087685.1 Protein Homology CDS 2656080 2657333 . + 0 ID=cds-WP_038272115.1;Parent=gene-LPH40_RS11045;Dbxref=Genbank:WP_038272115.1;Name=WP_038272115.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009606734.1;locus_tag=LPH40_RS11045;product=flavohemoglobin expression-modulating QEGLA motif protein;protein_id=WP_038272115.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2657665 2658465 . - . ID=gene-LPH40_RS11050;Name=LPH40_RS11050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11050;old_locus_tag=LPH40_11050 NZ_CP087685.1 Protein Homology CDS 2657665 2658465 . - 0 ID=cds-WP_038272117.1;Parent=gene-LPH40_RS11050;Dbxref=Genbank:WP_038272117.1;Name=WP_038272117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571170.1;locus_tag=LPH40_RS11050;product=glycosyltransferase family 2 protein;protein_id=WP_038272117.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2658462 2659235 . - . ID=gene-LPH40_RS11055;Name=LPH40_RS11055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11055;old_locus_tag=LPH40_11055 NZ_CP087685.1 Protein Homology CDS 2658462 2659235 . - 0 ID=cds-WP_171898080.1;Parent=gene-LPH40_RS11055;Dbxref=Genbank:WP_171898080.1;Name=WP_171898080.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302406.1;locus_tag=LPH40_RS11055;product=beta-ketoacyl synthase chain length factor;protein_id=WP_171898080.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2659238 2660464 . - . ID=gene-LPH40_RS11060;Name=LPH40_RS11060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11060;old_locus_tag=LPH40_11060 NZ_CP087685.1 Protein Homology CDS 2659238 2660464 . - 0 ID=cds-WP_230428207.1;Parent=gene-LPH40_RS11060;Dbxref=Genbank:WP_230428207.1;Name=WP_230428207.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337879.1;locus_tag=LPH40_RS11060;product=beta-ketoacyl-[acyl-carrier-protein] synthase family protein;protein_id=WP_230428207.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2660728 2660877 . + . ID=gene-LPH40_RS11065;Name=LPH40_RS11065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11065;old_locus_tag=LPH40_11065 NZ_CP087685.1 GeneMarkS-2+ CDS 2660728 2660877 . + 0 ID=cds-WP_160165206.1;Parent=gene-LPH40_RS11065;Dbxref=Genbank:WP_160165206.1;Name=WP_160165206.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11065;product=hypothetical protein;protein_id=WP_160165206.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2660870 2664187 . + . ID=gene-LPH40_RS11070;Name=LPH40_RS11070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11070;old_locus_tag=LPH40_11070 NZ_CP087685.1 Protein Homology CDS 2660870 2664187 . + 0 ID=cds-WP_038272125.1;Parent=gene-LPH40_RS11070;Dbxref=Genbank:WP_038272125.1;Name=WP_038272125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087287.1;locus_tag=LPH40_RS11070;product=ankyrin repeat domain-containing protein;protein_id=WP_038272125.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2665293 2667881 . - . ID=gene-LPH40_RS11075;Name=mprF;gbkey=Gene;gene=mprF;gene_biotype=protein_coding;locus_tag=LPH40_RS11075;old_locus_tag=LPH40_11075 NZ_CP087685.1 Protein Homology CDS 2665293 2667881 . - 0 ID=cds-WP_038272132.1;Parent=gene-LPH40_RS11075;Dbxref=Genbank:WP_038272132.1;Name=WP_038272132.1;gbkey=CDS;gene=mprF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084924.1;locus_tag=LPH40_RS11075;product=bifunctional lysylphosphatidylglycerol flippase/synthetase MprF;protein_id=WP_038272132.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2668504 2668848 . + . ID=gene-LPH40_RS11080;Name=LPH40_RS11080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11080;old_locus_tag=LPH40_11080 NZ_CP087685.1 Protein Homology CDS 2668504 2668848 . + 0 ID=cds-WP_038272135.1;Parent=gene-LPH40_RS11080;Dbxref=Genbank:WP_038272135.1;Name=WP_038272135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084923.1;locus_tag=LPH40_RS11080;product=RidA family protein;protein_id=WP_038272135.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2669233 2669309 . + . ID=gene-LPH40_RS11085;Name=LPH40_RS11085;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS11085;old_locus_tag=LPH40_11085 NZ_CP087685.1 tRNAscan-SE tRNA 2669233 2669309 . + . ID=rna-LPH40_RS11085;Parent=gene-LPH40_RS11085;anticodon=(pos:2669267..2669269);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS11085;product=tRNA-Arg NZ_CP087685.1 tRNAscan-SE exon 2669233 2669309 . + . ID=exon-LPH40_RS11085-1;Parent=rna-LPH40_RS11085;anticodon=(pos:2669267..2669269);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS11085;product=tRNA-Arg NZ_CP087685.1 RefSeq gene 2669499 2670326 . - . ID=gene-LPH40_RS11090;Name=LPH40_RS11090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11090;old_locus_tag=LPH40_11090 NZ_CP087685.1 Protein Homology CDS 2669499 2670326 . - 0 ID=cds-WP_038272169.1;Parent=gene-LPH40_RS11090;Dbxref=Genbank:WP_038272169.1;Name=WP_038272169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572079.1;locus_tag=LPH40_RS11090;product=hypothetical protein;protein_id=WP_038272169.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2670472 2671374 . - . ID=gene-LPH40_RS11095;Name=LPH40_RS11095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11095;old_locus_tag=LPH40_11095 NZ_CP087685.1 Protein Homology CDS 2670472 2671374 . - 0 ID=cds-WP_051482360.1;Parent=gene-LPH40_RS11095;Dbxref=Genbank:WP_051482360.1;Name=WP_051482360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852738.1;locus_tag=LPH40_RS11095;product=Hsp33 family molecular chaperone HslO;protein_id=WP_051482360.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2671450 2672181 . + . ID=gene-LPH40_RS11100;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=protein_coding;locus_tag=LPH40_RS11100;old_locus_tag=LPH40_11100 NZ_CP087685.1 Protein Homology CDS 2671450 2672181 . + 0 ID=cds-WP_230428283.1;Parent=gene-LPH40_RS11100;Dbxref=Genbank:WP_230428283.1;Name=WP_230428283.1;Ontology_term=GO:0009252,GO:0009274,GO:0016020;gbkey=CDS;gene=mtgA;go_component=peptidoglycan-based cell wall|0009274||IEA,membrane|0016020||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382616.1;locus_tag=LPH40_RS11100;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=WP_230428283.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2673028 2675634 . + . ID=gene-LPH40_RS11105;Name=mutS;gbkey=Gene;gene=mutS;gene_biotype=protein_coding;locus_tag=LPH40_RS11105;old_locus_tag=LPH40_11105 NZ_CP087685.1 Protein Homology CDS 2673028 2675634 . + 0 ID=cds-WP_162814115.1;Parent=gene-LPH40_RS11105;Dbxref=Genbank:WP_162814115.1;Name=WP_162814115.1;Ontology_term=GO:0006298,GO:0005524;gbkey=CDS;gene=mutS;go_function=ATP binding|0005524||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031336652.1;locus_tag=LPH40_RS11105;product=DNA mismatch repair protein MutS;protein_id=WP_162814115.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2675681 2676487 . - . ID=gene-LPH40_RS11110;Name=LPH40_RS11110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11110;old_locus_tag=LPH40_11110 NZ_CP087685.1 Protein Homology CDS 2675681 2676487 . - 0 ID=cds-WP_038272139.1;Parent=gene-LPH40_RS11110;Dbxref=Genbank:WP_038272139.1;Name=WP_038272139.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852741.1;locus_tag=LPH40_RS11110;product=YggS family pyridoxal phosphate-dependent enzyme;protein_id=WP_038272139.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2676892 2676967 . + . ID=gene-LPH40_RS11115;Name=LPH40_RS11115;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS11115;old_locus_tag=LPH40_11115 NZ_CP087685.1 tRNAscan-SE tRNA 2676892 2676967 . + . ID=rna-LPH40_RS11115;Parent=gene-LPH40_RS11115;anticodon=(pos:2676925..2676927);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS11115;product=tRNA-Gly NZ_CP087685.1 tRNAscan-SE exon 2676892 2676967 . + . ID=exon-LPH40_RS11115-1;Parent=rna-LPH40_RS11115;anticodon=(pos:2676925..2676927);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS11115;product=tRNA-Gly NZ_CP087685.1 RefSeq gene 2677113 2677442 . + . ID=gene-LPH40_RS11120;Name=LPH40_RS11120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11120;old_locus_tag=LPH40_11120 NZ_CP087685.1 GeneMarkS-2+ CDS 2677113 2677442 . + 0 ID=cds-WP_152536648.1;Parent=gene-LPH40_RS11120;Dbxref=Genbank:WP_152536648.1;Name=WP_152536648.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11120;product=hypothetical protein;protein_id=WP_152536648.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2678148 2679101 . + . ID=gene-LPH40_RS11125;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;locus_tag=LPH40_RS11125;old_locus_tag=LPH40_11125 NZ_CP087685.1 Protein Homology CDS 2678148 2679101 . + 0 ID=cds-WP_038272140.1;Parent=gene-LPH40_RS11125;Dbxref=Genbank:WP_038272140.1;Name=WP_038272140.1;Ontology_term=GO:0006355,GO:0036211,GO:0004077;gbkey=CDS;gene=birA;go_function=biotin-[acetyl-CoA-carboxylase] ligase activity|0004077||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257360.1;locus_tag=LPH40_RS11125;product=bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;protein_id=WP_038272140.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2679098 2679823 . + . ID=gene-LPH40_RS11130;Name=LPH40_RS11130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11130;old_locus_tag=LPH40_11130 NZ_CP087685.1 Protein Homology CDS 2679098 2679823 . + 0 ID=cds-WP_038272143.1;Parent=gene-LPH40_RS11130;Dbxref=Genbank:WP_038272143.1;Name=WP_038272143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894264.1;locus_tag=LPH40_RS11130;product=type III pantothenate kinase;protein_id=WP_038272143.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2679834 2680460 . + . ID=gene-LPH40_RS11135;Name=LPH40_RS11135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11135;old_locus_tag=LPH40_11135 NZ_CP087685.1 Protein Homology CDS 2679834 2680460 . + 0 ID=cds-WP_038272144.1;Parent=gene-LPH40_RS11135;Dbxref=Genbank:WP_038272144.1;Name=WP_038272144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089397.1;locus_tag=LPH40_RS11135;product=SPOR domain-containing protein;protein_id=WP_038272144.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2680618 2680693 . + . ID=gene-LPH40_RS11140;Name=LPH40_RS11140;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS11140;old_locus_tag=LPH40_11140 NZ_CP087685.1 tRNAscan-SE tRNA 2680618 2680693 . + . ID=rna-LPH40_RS11140;Parent=gene-LPH40_RS11140;anticodon=(pos:2680651..2680653);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS11140;product=tRNA-Thr NZ_CP087685.1 tRNAscan-SE exon 2680618 2680693 . + . ID=exon-LPH40_RS11140-1;Parent=rna-LPH40_RS11140;anticodon=(pos:2680651..2680653);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS11140;product=tRNA-Thr NZ_CP087685.1 RefSeq gene 2681725 2682024 . + . ID=gene-LPH40_RS11145;Name=LPH40_RS11145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11145;old_locus_tag=LPH40_11145 NZ_CP087685.1 GeneMarkS-2+ CDS 2681725 2682024 . + 0 ID=cds-WP_038272145.1;Parent=gene-LPH40_RS11145;Dbxref=Genbank:WP_038272145.1;Name=WP_038272145.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11145;product=hypothetical protein;protein_id=WP_038272145.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2682151 2682393 . + . ID=gene-LPH40_RS11150;Name=LPH40_RS11150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11150;old_locus_tag=LPH40_11150 NZ_CP087685.1 Protein Homology CDS 2682151 2682393 . + 0 ID=cds-WP_160165207.1;Parent=gene-LPH40_RS11150;Dbxref=Genbank:WP_160165207.1;Name=WP_160165207.1;Ontology_term=GO:0019068,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: protein motif:HMM:NF016991.2;locus_tag=LPH40_RS11150;product=phage portal protein;protein_id=WP_160165207.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2682464 2682934 . + . ID=gene-LPH40_RS11155;Name=LPH40_RS11155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11155;old_locus_tag=LPH40_11155 NZ_CP087685.1 Protein Homology CDS 2682464 2682934 . + 0 ID=cds-WP_114867113.1;Parent=gene-LPH40_RS11155;Dbxref=Genbank:WP_114867113.1;Name=WP_114867113.1;Ontology_term=GO:0019068,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: protein motif:HMM:NF016991.2;locus_tag=LPH40_RS11155;product=phage portal protein;protein_id=WP_114867113.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2683161 2683778 . + . ID=gene-LPH40_RS11160;Name=LPH40_RS11160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11160;old_locus_tag=LPH40_11160 NZ_CP087685.1 Protein Homology CDS 2683161 2683778 . + 0 ID=cds-WP_038272147.1;Parent=gene-LPH40_RS11160;Dbxref=Genbank:WP_038272147.1;Name=WP_038272147.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894838.1;locus_tag=LPH40_RS11160;product=glycoside hydrolase family 25 protein;protein_id=WP_038272147.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2684563 2684668 . + . ID=gene-LPH40_RS11165;Name=LPH40_RS11165;end_range=2684668,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS11165;old_locus_tag=LPH40_11165;partial=true;pseudo=true;start_range=.,2684563 NZ_CP087685.1 Protein Homology CDS 2684563 2684668 . + 0 ID=cds-LPH40_RS11165;Parent=gene-LPH40_RS11165;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2684668,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097944.1;locus_tag=LPH40_RS11165;partial=true;product=BRO family protein;pseudo=true;start_range=.,2684563;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2684735 2684917 . + . ID=gene-LPH40_RS11170;Name=LPH40_RS11170;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS11170;old_locus_tag=LPH40_11170;partial=true;pseudo=true;start_range=.,2684735 NZ_CP087685.1 Protein Homology CDS 2684735 2684917 . + 0 ID=cds-LPH40_RS11170;Parent=gene-LPH40_RS11170;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852371.1;locus_tag=LPH40_RS11170;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2684735;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2685039 2685336 . + . ID=gene-LPH40_RS11175;Name=LPH40_RS11175;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS11175;old_locus_tag=LPH40_11175;pseudo=true NZ_CP087685.1 Protein Homology CDS 2685039 2685336 . + 0 ID=cds-LPH40_RS11175;Parent=gene-LPH40_RS11175;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894094.1;locus_tag=LPH40_RS11175;product=type II toxin-antitoxin system RelE/ParE family toxin;pseudo=true;transl_table=11 NZ_CP087685.1 RefSeq gene 2685333 2685632 . + . ID=gene-LPH40_RS11180;Name=LPH40_RS11180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11180;old_locus_tag=LPH40_11180 NZ_CP087685.1 Protein Homology CDS 2685333 2685632 . + 0 ID=cds-WP_171898051.1;Parent=gene-LPH40_RS11180;Dbxref=Genbank:WP_171898051.1;Name=WP_171898051.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009580422.1;locus_tag=LPH40_RS11180;product=putative addiction module antidote protein;protein_id=WP_171898051.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2685948 2686316 . + . ID=gene-LPH40_RS11185;Name=LPH40_RS11185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11185;old_locus_tag=LPH40_11185 NZ_CP087685.1 Protein Homology CDS 2685948 2686316 . + 0 ID=cds-WP_038272150.1;Parent=gene-LPH40_RS11185;Dbxref=Genbank:WP_038272150.1;Name=WP_038272150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085010.1;locus_tag=LPH40_RS11185;product=DUF4054 domain-containing protein;protein_id=WP_038272150.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2686364 2686930 . - . ID=gene-LPH40_RS11190;Name=LPH40_RS11190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11190;old_locus_tag=LPH40_11190 NZ_CP087685.1 Protein Homology CDS 2686364 2686930 . - 0 ID=cds-WP_038272151.1;Parent=gene-LPH40_RS11190;Dbxref=Genbank:WP_038272151.1;Name=WP_038272151.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084910.1;locus_tag=LPH40_RS11190;product=pilin;protein_id=WP_038272151.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2686978 2687433 . - . ID=gene-LPH40_RS11195;Name=LPH40_RS11195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11195;old_locus_tag=LPH40_11195 NZ_CP087685.1 GeneMarkS-2+ CDS 2686978 2687433 . - 0 ID=cds-WP_160199346.1;Parent=gene-LPH40_RS11195;Dbxref=Genbank:WP_160199346.1;Name=WP_160199346.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11195;product=hypothetical protein;protein_id=WP_160199346.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2687472 2687864 . + . ID=gene-LPH40_RS11200;Name=LPH40_RS11200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11200;old_locus_tag=LPH40_11200 NZ_CP087685.1 Protein Homology CDS 2687472 2687864 . + 0 ID=cds-WP_069636218.1;Parent=gene-LPH40_RS11200;Dbxref=Genbank:WP_069636218.1;Name=WP_069636218.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090296.1;locus_tag=LPH40_RS11200;product=hypothetical protein;protein_id=WP_069636218.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2687794 2688603 . + . ID=gene-LPH40_RS11205;Name=LPH40_RS11205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11205;old_locus_tag=LPH40_11205 NZ_CP087685.1 GeneMarkS-2+ CDS 2687794 2688603 . + 0 ID=cds-WP_200866208.1;Parent=gene-LPH40_RS11205;Dbxref=Genbank:WP_200866208.1;Name=WP_200866208.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11205;product=VWA domain-containing protein;protein_id=WP_200866208.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2688596 2689108 . + . ID=gene-LPH40_RS11210;Name=LPH40_RS11210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11210;old_locus_tag=LPH40_11210 NZ_CP087685.1 Protein Homology CDS 2688596 2689108 . + 0 ID=cds-WP_038272154.1;Parent=gene-LPH40_RS11210;Dbxref=Genbank:WP_038272154.1;Name=WP_038272154.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894567.1;locus_tag=LPH40_RS11210;product=hypothetical protein;protein_id=WP_038272154.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2689111 2689530 . + . ID=gene-LPH40_RS11215;Name=LPH40_RS11215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11215;old_locus_tag=LPH40_11215 NZ_CP087685.1 Protein Homology CDS 2689111 2689530 . + 0 ID=cds-WP_038272155.1;Parent=gene-LPH40_RS11215;Dbxref=Genbank:WP_038272155.1;Name=WP_038272155.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083636.1;locus_tag=LPH40_RS11215;product=hypothetical protein;protein_id=WP_038272155.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2689882 2690277 . - . ID=gene-LPH40_RS11220;Name=LPH40_RS11220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11220;old_locus_tag=LPH40_11220 NZ_CP087685.1 Protein Homology CDS 2689882 2690277 . - 0 ID=cds-WP_038272158.1;Parent=gene-LPH40_RS11220;Dbxref=Genbank:WP_038272158.1;Name=WP_038272158.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1;locus_tag=LPH40_RS11220;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_038272158.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2690274 2690540 . - . ID=gene-LPH40_RS11225;Name=LPH40_RS11225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11225;old_locus_tag=LPH40_11225 NZ_CP087685.1 Protein Homology CDS 2690274 2690540 . - 0 ID=cds-WP_038272159.1;Parent=gene-LPH40_RS11225;Dbxref=Genbank:WP_038272159.1;Name=WP_038272159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852902.1;locus_tag=LPH40_RS11225;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_038272159.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2690658 2691098 . - . ID=gene-LPH40_RS11230;Name=LPH40_RS11230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11230;old_locus_tag=LPH40_11230 NZ_CP087685.1 Protein Homology CDS 2690658 2691098 . - 0 ID=cds-WP_069636219.1;Parent=gene-LPH40_RS11230;Dbxref=Genbank:WP_069636219.1;Name=WP_069636219.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023888.2;locus_tag=LPH40_RS11230;product=DUF3693 domain-containing protein;protein_id=WP_069636219.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2691243 2691503 . + . ID=gene-LPH40_RS11235;Name=LPH40_RS11235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11235;old_locus_tag=LPH40_11235 NZ_CP087685.1 GeneMarkS-2+ CDS 2691243 2691503 . + 0 ID=cds-WP_152536649.1;Parent=gene-LPH40_RS11235;Dbxref=Genbank:WP_152536649.1;Name=WP_152536649.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11235;product=hypothetical protein;protein_id=WP_152536649.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2691534 2691716 . + . ID=gene-LPH40_RS11240;Name=LPH40_RS11240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11240;old_locus_tag=LPH40_11240 NZ_CP087685.1 Protein Homology CDS 2691534 2691716 . + 0 ID=cds-WP_114867114.1;Parent=gene-LPH40_RS11240;Dbxref=Genbank:WP_114867114.1;Name=WP_114867114.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853101.1;locus_tag=LPH40_RS11240;product=hypothetical protein;protein_id=WP_114867114.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2692147 2693295 . + . ID=gene-LPH40_RS11245;Name=LPH40_RS11245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11245;old_locus_tag=LPH40_11245 NZ_CP087685.1 Protein Homology CDS 2692147 2693295 . + 0 ID=cds-WP_038273097.1-2;Parent=gene-LPH40_RS11245;Dbxref=Genbank:WP_038273097.1;Name=WP_038273097.1;Ontology_term=GO:0006270,GO:0003677,GO:0003916;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA replication initiation|0006270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853102.1;locus_tag=LPH40_RS11245;product=replication initiation factor domain-containing protein;protein_id=WP_038273097.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2693341 2693634 . + . ID=gene-LPH40_RS11250;Name=LPH40_RS11250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11250;old_locus_tag=LPH40_11250 NZ_CP087685.1 Protein Homology CDS 2693341 2693634 . + 0 ID=cds-WP_038273093.1-2;Parent=gene-LPH40_RS11250;Dbxref=Genbank:WP_038273093.1;Name=WP_038273093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097860.1;locus_tag=LPH40_RS11250;product=single-stranded DNA-binding protein;protein_id=WP_038273093.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2693634 2693843 . + . ID=gene-LPH40_RS11255;Name=LPH40_RS11255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11255;old_locus_tag=LPH40_11255 NZ_CP087685.1 Protein Homology CDS 2693634 2693843 . + 0 ID=cds-WP_230428208.1-2;Parent=gene-LPH40_RS11255;Dbxref=Genbank:WP_230428208.1;Name=WP_230428208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382571.1;locus_tag=LPH40_RS11255;product=hypothetical protein;protein_id=WP_230428208.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2693852 2694070 . + . ID=gene-LPH40_RS11260;Name=LPH40_RS11260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11260;old_locus_tag=LPH40_11260 NZ_CP087685.1 Protein Homology CDS 2693852 2694070 . + 0 ID=cds-WP_051482398.1-2;Parent=gene-LPH40_RS11260;Dbxref=Genbank:WP_051482398.1;Name=WP_051482398.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017194.2;locus_tag=LPH40_RS11260;product=major capsid protein;protein_id=WP_051482398.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2694538 2695605 . + . ID=gene-LPH40_RS11265;Name=LPH40_RS11265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11265;old_locus_tag=LPH40_11265 NZ_CP087685.1 Protein Homology CDS 2694538 2695605 . + 0 ID=cds-WP_152536670.1-2;Parent=gene-LPH40_RS11265;Dbxref=Genbank:WP_152536670.1;Name=WP_152536670.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF041109.1;locus_tag=LPH40_RS11265;product=virulence factor TspB C-terminal domain-related protein;protein_id=WP_152536670.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2695609 2695950 . + . ID=gene-LPH40_RS11270;Name=LPH40_RS11270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11270;old_locus_tag=LPH40_11270 NZ_CP087685.1 Protein Homology CDS 2695609 2695950 . + 0 ID=cds-WP_038273089.1-2;Parent=gene-LPH40_RS11270;Dbxref=Genbank:WP_038273089.1;Name=WP_038273089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097845.1;locus_tag=LPH40_RS11270;product=DUF2523 family protein;protein_id=WP_038273089.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2695950 2697098 . + . ID=gene-LPH40_RS11275;Name=LPH40_RS11275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11275;old_locus_tag=LPH40_11275 NZ_CP087685.1 Protein Homology CDS 2695950 2697098 . + 0 ID=cds-WP_069636227.1-2;Parent=gene-LPH40_RS11275;Dbxref=Genbank:WP_069636227.1;Name=WP_069636227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382577.1;locus_tag=LPH40_RS11275;product=hypothetical protein;protein_id=WP_069636227.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2697103 2697459 . - . ID=gene-LPH40_RS11280;Name=LPH40_RS11280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11280;old_locus_tag=LPH40_11280 NZ_CP087685.1 Protein Homology CDS 2697103 2697459 . - 0 ID=cds-WP_200866198.1;Parent=gene-LPH40_RS11280;Dbxref=Genbank:WP_200866198.1;Name=WP_200866198.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051576.1;locus_tag=LPH40_RS11280;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_200866198.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2697402 2697674 . - . ID=gene-LPH40_RS11285;Name=LPH40_RS11285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11285;old_locus_tag=LPH40_11285 NZ_CP087685.1 Protein Homology CDS 2697402 2697674 . - 0 ID=cds-WP_038271292.1;Parent=gene-LPH40_RS11285;Dbxref=Genbank:WP_038271292.1;Name=WP_038271292.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004371118.1;locus_tag=LPH40_RS11285;product=CopG family ribbon-helix-helix protein;protein_id=WP_038271292.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2698016 2698888 . + . ID=gene-LPH40_RS11290;Name=LPH40_RS11290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11290;old_locus_tag=LPH40_11290 NZ_CP087685.1 Protein Homology CDS 2698016 2698888 . + 0 ID=cds-WP_051482318.1;Parent=gene-LPH40_RS11290;Dbxref=Genbank:WP_051482318.1;Name=WP_051482318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087203.1;locus_tag=LPH40_RS11290;product=site-specific integrase;protein_id=WP_051482318.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2698901 2699293 . - . ID=gene-LPH40_RS11295;Name=LPH40_RS11295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11295;old_locus_tag=LPH40_11295 NZ_CP087685.1 GeneMarkS-2+ CDS 2698901 2699293 . - 0 ID=cds-WP_051482319.1;Parent=gene-LPH40_RS11295;Dbxref=Genbank:WP_051482319.1;Name=WP_051482319.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11295;product=hypothetical protein;protein_id=WP_051482319.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2699480 2699638 . - . ID=gene-LPH40_RS11300;Name=LPH40_RS11300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11300;old_locus_tag=LPH40_11300 NZ_CP087685.1 GeneMarkS-2+ CDS 2699480 2699638 . - 0 ID=cds-WP_160165178.1;Parent=gene-LPH40_RS11300;Dbxref=Genbank:WP_160165178.1;Name=WP_160165178.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11300;product=hypothetical protein;protein_id=WP_160165178.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2699635 2700213 . - . ID=gene-LPH40_RS11305;Name=LPH40_RS11305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11305;old_locus_tag=LPH40_11305 NZ_CP087685.1 Protein Homology CDS 2699635 2700213 . - 0 ID=cds-WP_081755441.1;Parent=gene-LPH40_RS11305;Dbxref=Genbank:WP_081755441.1;Name=WP_081755441.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086808.1;locus_tag=LPH40_RS11305;product=lysozyme;protein_id=WP_081755441.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2700229 2700441 . - . ID=gene-LPH40_RS11310;Name=LPH40_RS11310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11310;old_locus_tag=LPH40_11310 NZ_CP087685.1 Protein Homology CDS 2700229 2700441 . - 0 ID=cds-WP_038271294.1;Parent=gene-LPH40_RS11310;Dbxref=Genbank:WP_038271294.1;Name=WP_038271294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086826.1;locus_tag=LPH40_RS11310;product=hypothetical protein;protein_id=WP_038271294.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2700519 2700893 . - . ID=gene-LPH40_RS11315;Name=LPH40_RS11315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11315;old_locus_tag=LPH40_11315 NZ_CP087685.1 Protein Homology CDS 2700519 2700893 . - 0 ID=cds-WP_038271295.1;Parent=gene-LPH40_RS11315;Dbxref=Genbank:WP_038271295.1;Name=WP_038271295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893040.1;locus_tag=LPH40_RS11315;product=DUF2190 family protein;protein_id=WP_038271295.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2700956 2703211 . - . ID=gene-LPH40_RS11320;Name=LPH40_RS11320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11320;old_locus_tag=LPH40_11320 NZ_CP087685.1 Protein Homology CDS 2700956 2703211 . - 0 ID=cds-WP_081755442.1;Parent=gene-LPH40_RS11320;Dbxref=Genbank:WP_081755442.1;Name=WP_081755442.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851147.1;locus_tag=LPH40_RS11320;product=Clp protease ClpP;protein_id=WP_081755442.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2703208 2704767 . - . ID=gene-LPH40_RS11325;Name=LPH40_RS11325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11325;old_locus_tag=LPH40_11325 NZ_CP087685.1 Protein Homology CDS 2703208 2704767 . - 0 ID=cds-WP_038271296.1;Parent=gene-LPH40_RS11325;Dbxref=Genbank:WP_038271296.1;Name=WP_038271296.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086805.1;locus_tag=LPH40_RS11325;product=phage portal protein;protein_id=WP_038271296.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2704764 2704979 . - . ID=gene-LPH40_RS11330;Name=LPH40_RS11330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11330;old_locus_tag=LPH40_11330 NZ_CP087685.1 Protein Homology CDS 2704764 2704979 . - 0 ID=cds-WP_038271297.1;Parent=gene-LPH40_RS11330;Dbxref=Genbank:WP_038271297.1;Name=WP_038271297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337727.1;locus_tag=LPH40_RS11330;product=hypothetical protein;protein_id=WP_038271297.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2705174 2705500 . + . ID=gene-LPH40_RS11335;Name=LPH40_RS11335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11335;old_locus_tag=LPH40_11335 NZ_CP087685.1 Protein Homology CDS 2705174 2705500 . + 0 ID=cds-WP_038271298.1;Parent=gene-LPH40_RS11335;Dbxref=Genbank:WP_038271298.1;Name=WP_038271298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011798663.1;locus_tag=LPH40_RS11335;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_038271298.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2705594 2705908 . + . ID=gene-LPH40_RS11340;Name=LPH40_RS11340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11340;old_locus_tag=LPH40_11340 NZ_CP087685.1 Protein Homology CDS 2705594 2705908 . + 0 ID=cds-WP_038271299.1;Parent=gene-LPH40_RS11340;Dbxref=Genbank:WP_038271299.1;Name=WP_038271299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004167230.1;locus_tag=LPH40_RS11340;product=addiction module antidote protein;protein_id=WP_038271299.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2706051 2706305 . - . ID=gene-LPH40_RS11345;Name=LPH40_RS11345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11345;old_locus_tag=LPH40_11345 NZ_CP087685.1 Protein Homology CDS 2706051 2706305 . - 0 ID=cds-WP_200866200.1;Parent=gene-LPH40_RS11345;Dbxref=Genbank:WP_200866200.1;Name=WP_200866200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011342941.1;locus_tag=LPH40_RS11345;product=antitoxin of toxin-antitoxin stability system;protein_id=WP_200866200.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2707006 2707257 . + . ID=gene-LPH40_RS11350;Name=LPH40_RS11350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11350;old_locus_tag=LPH40_11350 NZ_CP087685.1 Protein Homology CDS 2707006 2707257 . + 0 ID=cds-WP_038271367.1;Parent=gene-LPH40_RS11350;Dbxref=Genbank:WP_038271367.1;Name=WP_038271367.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1;locus_tag=LPH40_RS11350;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_038271367.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2707254 2707652 . + . ID=gene-LPH40_RS11355;Name=LPH40_RS11355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11355;old_locus_tag=LPH40_11355 NZ_CP087685.1 Protein Homology CDS 2707254 2707652 . + 0 ID=cds-WP_038271302.1;Parent=gene-LPH40_RS11355;Dbxref=Genbank:WP_038271302.1;Name=WP_038271302.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1;locus_tag=LPH40_RS11355;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_038271302.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2709344 2709649 . - . ID=gene-LPH40_RS11360;Name=LPH40_RS11360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11360;old_locus_tag=LPH40_11360 NZ_CP087685.1 Protein Homology CDS 2709344 2709649 . - 0 ID=cds-WP_051482325.1;Parent=gene-LPH40_RS11360;Dbxref=Genbank:WP_051482325.1;Name=WP_051482325.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997832.1;locus_tag=LPH40_RS11360;product=metalloregulator ArsR/SmtB family transcription factor;protein_id=WP_051482325.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2709679 2710041 . - . ID=gene-LPH40_RS11365;Name=LPH40_RS11365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11365;old_locus_tag=LPH40_11365 NZ_CP087685.1 Protein Homology CDS 2709679 2710041 . - 0 ID=cds-WP_051482320.1;Parent=gene-LPH40_RS11365;Dbxref=Genbank:WP_051482320.1;Name=WP_051482320.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009579511.1;locus_tag=LPH40_RS11365;product=rhodanese-like domain-containing protein;protein_id=WP_051482320.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2710174 2711889 . + . ID=gene-LPH40_RS11370;Name=LPH40_RS11370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11370;old_locus_tag=LPH40_11370 NZ_CP087685.1 Protein Homology CDS 2710174 2711889 . + 0 ID=cds-WP_051482321.1;Parent=gene-LPH40_RS11370;Dbxref=Genbank:WP_051482321.1;Name=WP_051482321.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: protein motif:HMM:TIGR01730.1;locus_tag=LPH40_RS11370;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_051482321.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2711882 2715145 . + . ID=gene-LPH40_RS11375;Name=LPH40_RS11375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11375;old_locus_tag=LPH40_11375 NZ_CP087685.1 Protein Homology CDS 2711882 2715145 . + 0 ID=cds-WP_038271305.1;Parent=gene-LPH40_RS11375;Dbxref=Genbank:WP_038271305.1;Name=WP_038271305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017917373.1;locus_tag=LPH40_RS11375;product=efflux RND transporter permease subunit;protein_id=WP_038271305.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2715426 2716595 . - . ID=gene-LPH40_RS11380;Name=LPH40_RS11380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11380;old_locus_tag=LPH40_11380 NZ_CP087685.1 Protein Homology CDS 2715426 2716595 . - 0 ID=cds-WP_038271306.1;Parent=gene-LPH40_RS11380;Dbxref=Genbank:WP_038271306.1;Name=WP_038271306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089406.1;locus_tag=LPH40_RS11380;product=porphyrin biosynthesis protein;protein_id=WP_038271306.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2716592 2717572 . - . ID=gene-LPH40_RS11385;Name=LPH40_RS11385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11385;old_locus_tag=LPH40_11385 NZ_CP087685.1 Protein Homology CDS 2716592 2717572 . - 0 ID=cds-WP_038271307.1;Parent=gene-LPH40_RS11385;Dbxref=Genbank:WP_038271307.1;Name=WP_038271307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488502.1;locus_tag=LPH40_RS11385;product=uroporphyrinogen-III C-methyltransferase;protein_id=WP_038271307.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2717620 2718393 . - . ID=gene-LPH40_RS11390;Name=LPH40_RS11390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11390;old_locus_tag=LPH40_11390 NZ_CP087685.1 Protein Homology CDS 2717620 2718393 . - 0 ID=cds-WP_038271371.1;Parent=gene-LPH40_RS11390;Dbxref=Genbank:WP_038271371.1;Name=WP_038271371.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370608.1;locus_tag=LPH40_RS11390;product=uroporphyrinogen-III synthase;protein_id=WP_038271371.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2718537 2718974 . + . ID=gene-LPH40_RS11395;Name=LPH40_RS11395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11395;old_locus_tag=LPH40_11395 NZ_CP087685.1 Protein Homology CDS 2718537 2718974 . + 0 ID=cds-WP_038271308.1;Parent=gene-LPH40_RS11395;Dbxref=Genbank:WP_038271308.1;Name=WP_038271308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004089413.1;locus_tag=LPH40_RS11395;product=hypothetical protein;protein_id=WP_038271308.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2719051 2719488 . + . ID=gene-LPH40_RS11400;Name=LPH40_RS11400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11400;old_locus_tag=LPH40_11400 NZ_CP087685.1 Protein Homology CDS 2719051 2719488 . + 0 ID=cds-WP_038271309.1;Parent=gene-LPH40_RS11400;Dbxref=Genbank:WP_038271309.1;Name=WP_038271309.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084894.1;locus_tag=LPH40_RS11400;product=rhodanese-like domain-containing protein;protein_id=WP_038271309.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2719605 2720123 . + . ID=gene-LPH40_RS11405;Name=secB;gbkey=Gene;gene=secB;gene_biotype=protein_coding;locus_tag=LPH40_RS11405;old_locus_tag=LPH40_11405 NZ_CP087685.1 Protein Homology CDS 2719605 2720123 . + 0 ID=cds-WP_038271310.1;Parent=gene-LPH40_RS11405;Dbxref=Genbank:WP_038271310.1;Name=WP_038271310.1;gbkey=CDS;gene=secB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894270.1;locus_tag=LPH40_RS11405;product=protein-export chaperone SecB;protein_id=WP_038271310.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2720145 2721194 . + . ID=gene-LPH40_RS11410;Name=LPH40_RS11410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11410;old_locus_tag=LPH40_11410 NZ_CP087685.1 Protein Homology CDS 2720145 2721194 . + 0 ID=cds-WP_038271311.1;Parent=gene-LPH40_RS11410;Dbxref=Genbank:WP_038271311.1;Name=WP_038271311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572788.1;locus_tag=LPH40_RS11410;product=NAD(P)-dependent glycerol-3-phosphate dehydrogenase;protein_id=WP_038271311.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2721345 2721917 . - . ID=gene-LPH40_RS11415;Name=LPH40_RS11415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11415;old_locus_tag=LPH40_11415 NZ_CP087685.1 Protein Homology CDS 2721345 2721917 . - 0 ID=cds-WP_038271312.1;Parent=gene-LPH40_RS11415;Dbxref=Genbank:WP_038271312.1;Name=WP_038271312.1;Ontology_term=GO:0009372;gbkey=CDS;go_process=quorum sensing|0009372||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451122.1;locus_tag=LPH40_RS11415;product=Ax21 family protein;protein_id=WP_038271312.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2722648 2722884 . + . ID=gene-LPH40_RS11420;Name=LPH40_RS11420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11420;old_locus_tag=LPH40_11420 NZ_CP087685.1 GeneMarkS-2+ CDS 2722648 2722884 . + 0 ID=cds-WP_152536622.1;Parent=gene-LPH40_RS11420;Dbxref=Genbank:WP_152536622.1;Name=WP_152536622.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11420;product=hypothetical protein;protein_id=WP_152536622.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2724976 2725131 . - . ID=gene-LPH40_RS11425;Name=LPH40_RS11425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11425;old_locus_tag=LPH40_11425 NZ_CP087685.1 GeneMarkS-2+ CDS 2724976 2725131 . - 0 ID=cds-WP_160165180.1;Parent=gene-LPH40_RS11425;Dbxref=Genbank:WP_160165180.1;Name=WP_160165180.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11425;product=hypothetical protein;protein_id=WP_160165180.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2725607 2725699 . - . ID=gene-LPH40_RS11430;Name=LPH40_RS11430;gbkey=Gene;gene_biotype=tRNA;locus_tag=LPH40_RS11430;old_locus_tag=LPH40_11430 NZ_CP087685.1 tRNAscan-SE tRNA 2725607 2725699 . - . ID=rna-LPH40_RS11430;Parent=gene-LPH40_RS11430;anticodon=(pos:complement(2725663..2725665));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS11430;product=tRNA-Ser NZ_CP087685.1 tRNAscan-SE exon 2725607 2725699 . - . ID=exon-LPH40_RS11430-1;Parent=rna-LPH40_RS11430;anticodon=(pos:complement(2725663..2725665));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LPH40_RS11430;product=tRNA-Ser NZ_CP087685.1 RefSeq gene 2725846 2727738 . + . ID=gene-LPH40_RS11435;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=LPH40_RS11435;old_locus_tag=LPH40_11435 NZ_CP087685.1 Protein Homology CDS 2725846 2727738 . + 0 ID=cds-WP_038271314.1;Parent=gene-LPH40_RS11435;Dbxref=Genbank:WP_038271314.1;Name=WP_038271314.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0005524,GO:0009360;gbkey=CDS;gene=dnaX;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155800.1;locus_tag=LPH40_RS11435;product=DNA polymerase III subunit gamma/tau;protein_id=WP_038271314.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2727745 2728065 . + . ID=gene-LPH40_RS11440;Name=LPH40_RS11440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11440;old_locus_tag=LPH40_11440 NZ_CP087685.1 Protein Homology CDS 2727745 2728065 . + 0 ID=cds-WP_038271372.1;Parent=gene-LPH40_RS11440;Dbxref=Genbank:WP_038271372.1;Name=WP_038271372.1;Ontology_term=GO:0008150,GO:0003677,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346622.1;locus_tag=LPH40_RS11440;product=YbaB/EbfC family nucleoid-associated protein;protein_id=WP_038271372.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2728251 2728847 . + . ID=gene-LPH40_RS11445;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=LPH40_RS11445;old_locus_tag=LPH40_11445 NZ_CP087685.1 Protein Homology CDS 2728251 2728847 . + 0 ID=cds-WP_038271315.1;Parent=gene-LPH40_RS11445;Dbxref=Genbank:WP_038271315.1;Name=WP_038271315.1;Ontology_term=GO:0006281,GO:0006310;gbkey=CDS;gene=recR;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483843.1;locus_tag=LPH40_RS11445;product=recombination mediator RecR;protein_id=WP_038271315.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2728924 2729268 . + . ID=gene-LPH40_RS11450;Name=LPH40_RS11450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11450;old_locus_tag=LPH40_11450 NZ_CP087685.1 Protein Homology CDS 2728924 2729268 . + 0 ID=cds-WP_038271316.1;Parent=gene-LPH40_RS11450;Dbxref=Genbank:WP_038271316.1;Name=WP_038271316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894278.1;locus_tag=LPH40_RS11450;product=histidine triad nucleotide-binding protein;protein_id=WP_038271316.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2729337 2729858 . - . ID=gene-LPH40_RS11455;Name=LPH40_RS11455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11455;old_locus_tag=LPH40_11455 NZ_CP087685.1 Protein Homology CDS 2729337 2729858 . - 0 ID=cds-WP_038271317.1;Parent=gene-LPH40_RS11455;Dbxref=Genbank:WP_038271317.1;Name=WP_038271317.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920486.1;locus_tag=LPH40_RS11455;product=Slp family lipoprotein;protein_id=WP_038271317.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2729752 2731797 . - . ID=gene-LPH40_RS11460;Name=LPH40_RS11460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11460;old_locus_tag=LPH40_11460 NZ_CP087685.1 Protein Homology CDS 2729752 2731797 . - 0 ID=cds-WP_038271318.1;Parent=gene-LPH40_RS11460;Dbxref=Genbank:WP_038271318.1;Name=WP_038271318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572798.1;locus_tag=LPH40_RS11460;product=DUF3488 and transglutaminase-like domain-containing protein;protein_id=WP_038271318.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2731790 2732749 . - . ID=gene-LPH40_RS11465;Name=LPH40_RS11465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11465;old_locus_tag=LPH40_11465 NZ_CP087685.1 Protein Homology CDS 2731790 2732749 . - 0 ID=cds-WP_038271319.1;Parent=gene-LPH40_RS11465;Dbxref=Genbank:WP_038271319.1;Name=WP_038271319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850007.1;locus_tag=LPH40_RS11465;product=DUF58 domain-containing protein;protein_id=WP_038271319.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2732752 2733711 . - . ID=gene-LPH40_RS11470;Name=LPH40_RS11470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11470;old_locus_tag=LPH40_11470 NZ_CP087685.1 Protein Homology CDS 2732752 2733711 . - 0 ID=cds-WP_114867219.1;Parent=gene-LPH40_RS11470;Dbxref=Genbank:WP_114867219.1;Name=WP_114867219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502249.1;locus_tag=LPH40_RS11470;product=MoxR family ATPase;protein_id=WP_114867219.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2733739 2735568 . + . ID=gene-LPH40_RS11475;Name=LPH40_RS11475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11475;old_locus_tag=LPH40_11475 NZ_CP087685.1 Protein Homology CDS 2733739 2735568 . + 0 ID=cds-WP_171898081.1;Parent=gene-LPH40_RS11475;Dbxref=Genbank:WP_171898081.1;Name=WP_171898081.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115355.1;locus_tag=LPH40_RS11475;product=glycosyltransferase family 39 protein;protein_id=WP_171898081.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2736077 2736586 . + . ID=gene-LPH40_RS11480;Name=LPH40_RS11480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11480;old_locus_tag=LPH40_11480 NZ_CP087685.1 Protein Homology CDS 2736077 2736586 . + 0 ID=cds-WP_038271323.1;Parent=gene-LPH40_RS11480;Dbxref=Genbank:WP_038271323.1;Name=WP_038271323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814328.1;locus_tag=LPH40_RS11480;product=YceD family protein;protein_id=WP_038271323.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2736685 2736879 . + . ID=gene-LPH40_RS11485;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=LPH40_RS11485;old_locus_tag=LPH40_11485 NZ_CP087685.1 Protein Homology CDS 2736685 2736879 . + 0 ID=cds-WP_038271324.1;Parent=gene-LPH40_RS11485;Dbxref=Genbank:WP_038271324.1;Name=WP_038271324.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmF;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302036.1;locus_tag=LPH40_RS11485;product=50S ribosomal protein L32;protein_id=WP_038271324.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2736977 2737951 . + . ID=gene-LPH40_RS11490;Name=LPH40_RS11490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11490;old_locus_tag=LPH40_11490 NZ_CP087685.1 Protein Homology CDS 2736977 2737951 . + 0 ID=cds-WP_038271325.1;Parent=gene-LPH40_RS11490;Dbxref=Genbank:WP_038271325.1;Name=WP_038271325.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502254.1;locus_tag=LPH40_RS11490;product=ketoacyl-ACP synthase III;protein_id=WP_038271325.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2738196 2738429 . - . ID=gene-LPH40_RS11495;Name=LPH40_RS11495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11495;old_locus_tag=LPH40_11495 NZ_CP087685.1 Protein Homology CDS 2738196 2738429 . - 0 ID=cds-WP_038271326.1;Parent=gene-LPH40_RS11495;Dbxref=Genbank:WP_038271326.1;Name=WP_038271326.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013676.2;locus_tag=LPH40_RS11495;product=hypothetical protein;protein_id=WP_038271326.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2739487 2739678 . - . ID=gene-LPH40_RS11500;Name=LPH40_RS11500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11500;old_locus_tag=LPH40_11500 NZ_CP087685.1 GeneMarkS-2+ CDS 2739487 2739678 . - 0 ID=cds-WP_081755444.1;Parent=gene-LPH40_RS11500;Dbxref=Genbank:WP_081755444.1;Name=WP_081755444.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11500;product=hypothetical protein;protein_id=WP_081755444.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2740488 2742455 . - . ID=gene-LPH40_RS11505;Name=LPH40_RS11505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11505;old_locus_tag=LPH40_11505 NZ_CP087685.1 Protein Homology CDS 2740488 2742455 . - 0 ID=cds-WP_069636213.1;Parent=gene-LPH40_RS11505;Dbxref=Genbank:WP_069636213.1;Name=WP_069636213.1;Ontology_term=GO:0030245,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=cellulose catabolic process|0030245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084038.1;locus_tag=LPH40_RS11505;product=glycoside hydrolase family 6 protein;protein_id=WP_069636213.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2743746 2745305 . - . ID=gene-LPH40_RS11510;Name=LPH40_RS11510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11510;old_locus_tag=LPH40_11510 NZ_CP087685.1 Protein Homology CDS 2743746 2745305 . - 0 ID=cds-WP_038271330.1;Parent=gene-LPH40_RS11510;Dbxref=Genbank:WP_038271330.1;Name=WP_038271330.1;Ontology_term=GO:0009098,GO:0019752,GO:0003852;gbkey=CDS;go_function=2-isopropylmalate synthase activity|0003852||IEA;go_process=leucine biosynthetic process|0009098||IEA,carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156818.1;locus_tag=LPH40_RS11510;product=2-isopropylmalate synthase;protein_id=WP_038271330.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2745360 2746412 . - . ID=gene-LPH40_RS11515;Name=LPH40_RS11515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11515;old_locus_tag=LPH40_11515 NZ_CP087685.1 Protein Homology CDS 2745360 2746412 . - 0 ID=cds-WP_038271331.1;Parent=gene-LPH40_RS11515;Dbxref=Genbank:WP_038271331.1;Name=WP_038271331.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572807.1;locus_tag=LPH40_RS11515;product=threonine dehydratase;protein_id=WP_038271331.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2746530 2746775 . - . ID=gene-LPH40_RS11520;Name=LPH40_RS11520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11520;old_locus_tag=LPH40_11520 NZ_CP087685.1 Protein Homology CDS 2746530 2746775 . - 0 ID=cds-WP_038271332.1;Parent=gene-LPH40_RS11520;Dbxref=Genbank:WP_038271332.1;Name=WP_038271332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084875.1;locus_tag=LPH40_RS11520;product=acetolactate synthase;protein_id=WP_038271332.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2746759 2748516 . - . ID=gene-LPH40_RS11525;Name=ilvG;gbkey=Gene;gene=ilvG;gene_biotype=protein_coding;locus_tag=LPH40_RS11525;old_locus_tag=LPH40_11525 NZ_CP087685.1 Protein Homology CDS 2746759 2748516 . - 0 ID=cds-WP_038271333.1;Parent=gene-LPH40_RS11525;Dbxref=Genbank:WP_038271333.1;Name=WP_038271333.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvG;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804901.1;locus_tag=LPH40_RS11525;product=acetolactate synthase 2 catalytic subunit;protein_id=WP_038271333.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2748562 2749569 . - . ID=gene-LPH40_RS11530;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;locus_tag=LPH40_RS11530;old_locus_tag=LPH40_11530 NZ_CP087685.1 Protein Homology CDS 2748562 2749569 . - 0 ID=cds-WP_038271334.1;Parent=gene-LPH40_RS11530;Dbxref=Genbank:WP_038271334.1;Name=WP_038271334.1;gbkey=CDS;gene=ilvC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852238.1;locus_tag=LPH40_RS11530;product=ketol-acid reductoisomerase;protein_id=WP_038271334.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2750722 2752905 . - . ID=gene-LPH40_RS11535;Name=LPH40_RS11535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11535;old_locus_tag=LPH40_11535 NZ_CP087685.1 Protein Homology CDS 2750722 2752905 . - 0 ID=cds-WP_038271335.1;Parent=gene-LPH40_RS11535;Dbxref=Genbank:WP_038271335.1;Name=WP_038271335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482716.1;locus_tag=LPH40_RS11535;product=carboxy terminal-processing peptidase;protein_id=WP_038271335.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2753901 2754890 . - . ID=gene-LPH40_RS11540;Name=LPH40_RS11540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11540;old_locus_tag=LPH40_11540 NZ_CP087685.1 Protein Homology CDS 2753901 2754890 . - 0 ID=cds-WP_038271336.1;Parent=gene-LPH40_RS11540;Dbxref=Genbank:WP_038271336.1;Name=WP_038271336.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084871.1;locus_tag=LPH40_RS11540;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_038271336.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2755277 2755708 . - . ID=gene-LPH40_RS11545;Name=LPH40_RS11545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11545;old_locus_tag=LPH40_11545 NZ_CP087685.1 Protein Homology CDS 2755277 2755708 . - 0 ID=cds-WP_038271337.1;Parent=gene-LPH40_RS11545;Dbxref=Genbank:WP_038271337.1;Name=WP_038271337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084870.1;locus_tag=LPH40_RS11545;product=organic hydroperoxide resistance protein;protein_id=WP_038271337.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2756210 2757382 . - . ID=gene-LPH40_RS11550;Name=zapE;gbkey=Gene;gene=zapE;gene_biotype=protein_coding;locus_tag=LPH40_RS11550;old_locus_tag=LPH40_11550 NZ_CP087685.1 Protein Homology CDS 2756210 2757382 . - 0 ID=cds-WP_038271338.1;Parent=gene-LPH40_RS11550;Dbxref=Genbank:WP_038271338.1;Name=WP_038271338.1;Ontology_term=GO:0051301,GO:0005524,GO:0016887;gbkey=CDS;gene=zapE;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974994.1;locus_tag=LPH40_RS11550;product=cell division protein ZapE;protein_id=WP_038271338.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2757427 2758089 . - . ID=gene-LPH40_RS11555;Name=LPH40_RS11555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11555;old_locus_tag=LPH40_11555 NZ_CP087685.1 Protein Homology CDS 2757427 2758089 . - 0 ID=cds-WP_038271377.1;Parent=gene-LPH40_RS11555;Dbxref=Genbank:WP_038271377.1;Name=WP_038271377.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035515.1;locus_tag=LPH40_RS11555;product=alpha/beta hydrolase;protein_id=WP_038271377.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2758428 2759756 . - . ID=gene-LPH40_RS11560;Name=LPH40_RS11560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11560;old_locus_tag=LPH40_11560 NZ_CP087685.1 Protein Homology CDS 2758428 2759756 . - 0 ID=cds-WP_038271339.1;Parent=gene-LPH40_RS11560;Dbxref=Genbank:WP_038271339.1;Name=WP_038271339.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851403.1;locus_tag=LPH40_RS11560;product=GTP-binding protein;protein_id=WP_038271339.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2760226 2760390 . - . ID=gene-LPH40_RS11565;Name=LPH40_RS11565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11565;old_locus_tag=LPH40_11565 NZ_CP087685.1 GeneMarkS-2+ CDS 2760226 2760390 . - 0 ID=cds-WP_114867124.1;Parent=gene-LPH40_RS11565;Dbxref=Genbank:WP_114867124.1;Name=WP_114867124.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11565;product=transposase;protein_id=WP_114867124.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2760707 2761558 . - . ID=gene-LPH40_RS11570;Name=purU;gbkey=Gene;gene=purU;gene_biotype=protein_coding;locus_tag=LPH40_RS11570;old_locus_tag=LPH40_11570 NZ_CP087685.1 Protein Homology CDS 2760707 2761558 . - 0 ID=cds-WP_038271340.1;Parent=gene-LPH40_RS11570;Dbxref=Genbank:WP_038271340.1;Name=WP_038271340.1;Ontology_term=GO:0009152,GO:0008864;gbkey=CDS;gene=purU;go_function=formyltetrahydrofolate deformylase activity|0008864||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237160.1;locus_tag=LPH40_RS11570;product=formyltetrahydrofolate deformylase;protein_id=WP_038271340.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2762479 2763126 . + . ID=gene-LPH40_RS11575;Name=LPH40_RS11575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11575;old_locus_tag=LPH40_11575 NZ_CP087685.1 Protein Homology CDS 2762479 2763126 . + 0 ID=cds-WP_038271341.1;Parent=gene-LPH40_RS11575;Dbxref=Genbank:WP_038271341.1;Name=WP_038271341.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894298.1;locus_tag=LPH40_RS11575;product=SCP2 sterol-binding domain-containing protein;protein_id=WP_038271341.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2763123 2764781 . + . ID=gene-LPH40_RS11580;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;locus_tag=LPH40_RS11580;old_locus_tag=LPH40_11580 NZ_CP087685.1 Protein Homology CDS 2763123 2764781 . + 0 ID=cds-WP_038271342.1;Parent=gene-LPH40_RS11580;Dbxref=Genbank:WP_038271342.1;Name=WP_038271342.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiB;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084864.1;locus_tag=LPH40_RS11580;product=ubiquinone biosynthesis regulatory protein kinase UbiB;protein_id=WP_038271342.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2764970 2765431 . - . ID=gene-LPH40_RS11585;Name=LPH40_RS11585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11585;old_locus_tag=LPH40_11585 NZ_CP087685.1 Protein Homology CDS 2764970 2765431 . - 0 ID=cds-WP_038271343.1;Parent=gene-LPH40_RS11585;Dbxref=Genbank:WP_038271343.1;Name=WP_038271343.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894300.1;locus_tag=LPH40_RS11585;product=thioredoxin family protein;protein_id=WP_038271343.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2765723 2766928 . - . ID=gene-LPH40_RS11590;Name=LPH40_RS11590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11590;old_locus_tag=LPH40_11590 NZ_CP087685.1 Protein Homology CDS 2765723 2766928 . - 0 ID=cds-WP_038271378.1;Parent=gene-LPH40_RS11590;Dbxref=Genbank:WP_038271378.1;Name=WP_038271378.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894301.1;locus_tag=LPH40_RS11590;product=trans-2-enoyl-CoA reductase family protein;protein_id=WP_038271378.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2768046 2768438 . - . ID=gene-LPH40_RS11595;Name=LPH40_RS11595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11595;old_locus_tag=LPH40_11595 NZ_CP087685.1 Protein Homology CDS 2768046 2768438 . - 0 ID=cds-WP_230428210.1;Parent=gene-LPH40_RS11595;Dbxref=Genbank:WP_230428210.1;Name=WP_230428210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014607767.1;locus_tag=LPH40_RS11595;product=hypothetical protein;protein_id=WP_230428210.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2768597 2769445 . - . ID=gene-LPH40_RS11600;Name=LPH40_RS11600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11600;old_locus_tag=LPH40_11600 NZ_CP087685.1 Protein Homology CDS 2768597 2769445 . - 0 ID=cds-WP_038271345.1;Parent=gene-LPH40_RS11600;Dbxref=Genbank:WP_038271345.1;Name=WP_038271345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894303.1;locus_tag=LPH40_RS11600;product=DUF2145 domain-containing protein;protein_id=WP_038271345.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2769473 2770438 . - . ID=gene-LPH40_RS11605;Name=LPH40_RS11605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11605;old_locus_tag=LPH40_11605 NZ_CP087685.1 Protein Homology CDS 2769473 2770438 . - 0 ID=cds-WP_038271346.1;Parent=gene-LPH40_RS11605;Dbxref=Genbank:WP_038271346.1;Name=WP_038271346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572824.1;locus_tag=LPH40_RS11605;product=ELM1/GtrOC1 family putative glycosyltransferase;protein_id=WP_038271346.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2770553 2771143 . + . ID=gene-LPH40_RS11610;Name=LPH40_RS11610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11610;old_locus_tag=LPH40_11610 NZ_CP087685.1 Protein Homology CDS 2770553 2771143 . + 0 ID=cds-WP_038271347.1;Parent=gene-LPH40_RS11610;Dbxref=Genbank:WP_038271347.1;Name=WP_038271347.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159505.1;locus_tag=LPH40_RS11610;product=malonic semialdehyde reductase;protein_id=WP_038271347.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2771206 2771919 . + . ID=gene-LPH40_RS11615;Name=LPH40_RS11615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11615;old_locus_tag=LPH40_11615 NZ_CP087685.1 Protein Homology CDS 2771206 2771919 . + 0 ID=cds-WP_081755445.1;Parent=gene-LPH40_RS11615;Dbxref=Genbank:WP_081755445.1;Name=WP_081755445.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851394.1;locus_tag=LPH40_RS11615;product=YceI family protein;protein_id=WP_081755445.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2772188 2772973 . - . ID=gene-LPH40_RS11620;Name=LPH40_RS11620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11620;old_locus_tag=LPH40_11620 NZ_CP087685.1 Protein Homology CDS 2772188 2772973 . - 0 ID=cds-WP_038271348.1;Parent=gene-LPH40_RS11620;Dbxref=Genbank:WP_038271348.1;Name=WP_038271348.1;Ontology_term=GO:0016311,GO:0050380,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;go_process=dephosphorylation|0016311||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341074.1;locus_tag=LPH40_RS11620;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_038271348.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2773168 2774577 . + . ID=gene-LPH40_RS11625;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=LPH40_RS11625;old_locus_tag=LPH40_11625 NZ_CP087685.1 Protein Homology CDS 2773168 2774577 . + 0 ID=cds-WP_038271349.1;Parent=gene-LPH40_RS11625;Dbxref=Genbank:WP_038271349.1;Name=WP_038271349.1;Ontology_term=GO:0006542,GO:0004356;gbkey=CDS;gene=glnA;go_function=glutamate-ammonia ligase activity|0004356||IEA;go_process=glutamine biosynthetic process|0006542||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157345.1;locus_tag=LPH40_RS11625;product=type I glutamate--ammonia ligase;protein_id=WP_038271349.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2774858 2775196 . + . ID=gene-LPH40_RS11630;Name=LPH40_RS11630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11630;old_locus_tag=LPH40_11630 NZ_CP087685.1 Protein Homology CDS 2774858 2775196 . + 0 ID=cds-WP_038271350.1;Parent=gene-LPH40_RS11630;Dbxref=Genbank:WP_038271350.1;Name=WP_038271350.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016654695.1;locus_tag=LPH40_RS11630;product=P-II family nitrogen regulator;protein_id=WP_038271350.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2775216 2776664 . + . ID=gene-LPH40_RS11635;Name=amt;gbkey=Gene;gene=amt;gene_biotype=protein_coding;locus_tag=LPH40_RS11635;old_locus_tag=LPH40_11635 NZ_CP087685.1 Protein Homology CDS 2775216 2776664 . + 0 ID=cds-WP_081755446.1;Parent=gene-LPH40_RS11635;Dbxref=Genbank:WP_081755446.1;Name=WP_081755446.1;Ontology_term=GO:0072488,GO:0008519;gbkey=CDS;gene=amt;go_function=ammonium transmembrane transporter activity|0008519||IEA;go_process=ammonium transmembrane transport|0072488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237112.1;locus_tag=LPH40_RS11635;product=ammonium transporter;protein_id=WP_081755446.1;transl_table=11 NZ_CP087685.1 RefSeq pseudogene 2776886 2777371 . + . ID=gene-LPH40_RS11640;Name=LPH40_RS11640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LPH40_RS11640;old_locus_tag=LPH40_11640;partial=true;pseudo=true;start_range=.,2776886 NZ_CP087685.1 Protein Homology CDS 2776886 2777371 . + 0 ID=cds-LPH40_RS11640;Parent=gene-LPH40_RS11640;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894314.1;locus_tag=LPH40_RS11640;partial=true;product=nitrogen regulation protein NR(I);pseudo=true;start_range=.,2776886;transl_table=11 NZ_CP087685.1 RefSeq gene 2777729 2778193 . + . ID=gene-LPH40_RS11645;Name=LPH40_RS11645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11645;old_locus_tag=LPH40_11645 NZ_CP087685.1 GeneMarkS-2+ CDS 2777729 2778193 . + 0 ID=cds-WP_038271352.1;Parent=gene-LPH40_RS11645;Dbxref=Genbank:WP_038271352.1;Name=WP_038271352.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11645;product=hypothetical protein;protein_id=WP_038271352.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2778300 2779169 . - . ID=gene-LPH40_RS11650;Name=nadC;gbkey=Gene;gene=nadC;gene_biotype=protein_coding;locus_tag=LPH40_RS11650;old_locus_tag=LPH40_11650 NZ_CP087685.1 Protein Homology CDS 2778300 2779169 . - 0 ID=cds-WP_038271353.1;Parent=gene-LPH40_RS11650;Dbxref=Genbank:WP_038271353.1;Name=WP_038271353.1;Ontology_term=GO:0019363,GO:0004514;gbkey=CDS;gene=nadC;go_function=nicotinate-nucleotide diphosphorylase (carboxylating) activity|0004514||IEA;go_process=pyridine nucleotide biosynthetic process|0019363||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572874.1;locus_tag=LPH40_RS11650;product=carboxylating nicotinate-nucleotide diphosphorylase;protein_id=WP_038271353.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2779166 2780704 . - . ID=gene-LPH40_RS11655;Name=LPH40_RS11655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11655;old_locus_tag=LPH40_11655 NZ_CP087685.1 Protein Homology CDS 2779166 2780704 . - 0 ID=cds-WP_038271354.1;Parent=gene-LPH40_RS11655;Dbxref=Genbank:WP_038271354.1;Name=WP_038271354.1;Ontology_term=GO:0009435,GO:0008734;gbkey=CDS;go_function=L-aspartate oxidase activity|0008734||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572875.1;locus_tag=LPH40_RS11655;product=L-aspartate oxidase;protein_id=WP_038271354.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2780717 2781718 . - . ID=gene-LPH40_RS11660;Name=nadA;gbkey=Gene;gene=nadA;gene_biotype=protein_coding;locus_tag=LPH40_RS11660;old_locus_tag=LPH40_11660 NZ_CP087685.1 Protein Homology CDS 2780717 2781718 . - 0 ID=cds-WP_201745829.1;Parent=gene-LPH40_RS11660;Dbxref=Genbank:WP_201745829.1;Name=WP_201745829.1;Ontology_term=GO:0009435,GO:0008987,GO:0051539;gbkey=CDS;gene=nadA;go_function=quinolinate synthetase A activity|0008987||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572876.1;locus_tag=LPH40_RS11660;product=quinolinate synthase NadA;protein_id=WP_201745829.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2782400 2783146 . - . ID=gene-LPH40_RS11665;Name=LPH40_RS11665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11665;old_locus_tag=LPH40_11665 NZ_CP087685.1 Protein Homology CDS 2782400 2783146 . - 0 ID=cds-WP_114867125.1;Parent=gene-LPH40_RS11665;Dbxref=Genbank:WP_114867125.1;Name=WP_114867125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894387.1;locus_tag=LPH40_RS11665;product=superoxide dismutase;protein_id=WP_114867125.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2783807 2784613 . + . ID=gene-LPH40_RS11670;Name=LPH40_RS11670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11670;old_locus_tag=LPH40_11670 NZ_CP087685.1 Protein Homology CDS 2783807 2784613 . + 0 ID=cds-WP_038271356.1;Parent=gene-LPH40_RS11670;Dbxref=Genbank:WP_038271356.1;Name=WP_038271356.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340561.1;locus_tag=LPH40_RS11670;product=TatD family hydrolase;protein_id=WP_038271356.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2784719 2785732 . + . ID=gene-LPH40_RS11675;Name=LPH40_RS11675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11675;old_locus_tag=LPH40_11675 NZ_CP087685.1 Protein Homology CDS 2784719 2785732 . + 0 ID=cds-WP_038271357.1;Parent=gene-LPH40_RS11675;Dbxref=Genbank:WP_038271357.1;Name=WP_038271357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894341.1;locus_tag=LPH40_RS11675;product=zonular occludens toxin domain-containing protein;protein_id=WP_038271357.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2785778 2786017 . - . ID=gene-LPH40_RS11680;Name=LPH40_RS11680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11680;old_locus_tag=LPH40_11680 NZ_CP087685.1 Protein Homology CDS 2785778 2786017 . - 0 ID=cds-WP_038271358.1;Parent=gene-LPH40_RS11680;Dbxref=Genbank:WP_038271358.1;Name=WP_038271358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004084072.1;locus_tag=LPH40_RS11680;product=hypothetical protein;protein_id=WP_038271358.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2786094 2786438 . - . ID=gene-LPH40_RS11685;Name=LPH40_RS11685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11685;old_locus_tag=LPH40_11685 NZ_CP087685.1 Protein Homology CDS 2786094 2786438 . - 0 ID=cds-WP_038271360.1;Parent=gene-LPH40_RS11685;Dbxref=Genbank:WP_038271360.1;Name=WP_038271360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004091322.1;locus_tag=LPH40_RS11685;product=DUF3653 domain-containing protein;protein_id=WP_038271360.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2786497 2786982 . - . ID=gene-LPH40_RS11690;Name=LPH40_RS11690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11690;old_locus_tag=LPH40_11690 NZ_CP087685.1 Protein Homology CDS 2786497 2786982 . - 0 ID=cds-WP_038271361.1;Parent=gene-LPH40_RS11690;Dbxref=Genbank:WP_038271361.1;Name=WP_038271361.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013540.2;locus_tag=LPH40_RS11690;product=DUF3693 domain-containing protein;protein_id=WP_038271361.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2787053 2787214 . + . ID=gene-LPH40_RS11695;Name=LPH40_RS11695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11695;old_locus_tag=LPH40_11695 NZ_CP087685.1 GeneMarkS-2+ CDS 2787053 2787214 . + 0 ID=cds-WP_160165182.1;Parent=gene-LPH40_RS11695;Dbxref=Genbank:WP_160165182.1;Name=WP_160165182.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11695;product=hypothetical protein;protein_id=WP_160165182.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2787218 2787481 . + . ID=gene-LPH40_RS11700;Name=LPH40_RS11700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11700;old_locus_tag=LPH40_11700 NZ_CP087685.1 GeneMarkS-2+ CDS 2787218 2787481 . + 0 ID=cds-WP_162814095.1-2;Parent=gene-LPH40_RS11700;Dbxref=Genbank:WP_162814095.1;Name=WP_162814095.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11700;product=hypothetical protein;protein_id=WP_162814095.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2787530 2787730 . + . ID=gene-LPH40_RS11705;Name=LPH40_RS11705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11705;old_locus_tag=LPH40_11705 NZ_CP087685.1 Protein Homology CDS 2787530 2787730 . + 0 ID=cds-WP_038273077.1-2;Parent=gene-LPH40_RS11705;Dbxref=Genbank:WP_038273077.1;Name=WP_038273077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020853101.1;locus_tag=LPH40_RS11705;product=hypothetical protein;protein_id=WP_038273077.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2787850 2787993 . + . ID=gene-LPH40_RS11710;Name=LPH40_RS11710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11710;old_locus_tag=LPH40_11710 NZ_CP087685.1 GeneMarkS-2+ CDS 2787850 2787993 . + 0 ID=cds-WP_160165233.1-2;Parent=gene-LPH40_RS11710;Dbxref=Genbank:WP_160165233.1;Name=WP_160165233.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LPH40_RS11710;product=hypothetical protein;protein_id=WP_160165233.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2788190 2788777 . + . ID=gene-LPH40_RS11715;Name=LPH40_RS11715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11715;old_locus_tag=LPH40_11715 NZ_CP087685.1 Protein Homology CDS 2788190 2788777 . + 0 ID=cds-WP_038273076.1-2;Parent=gene-LPH40_RS11715;Dbxref=Genbank:WP_038273076.1;Name=WP_038273076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894347.1;locus_tag=LPH40_RS11715;product=hypothetical protein;protein_id=WP_038273076.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2789053 2789367 . + . ID=gene-LPH40_RS11720;Name=LPH40_RS11720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11720;old_locus_tag=LPH40_11720 NZ_CP087685.1 Protein Homology CDS 2789053 2789367 . + 0 ID=cds-WP_230428211.1-2;Parent=gene-LPH40_RS11720;Dbxref=Genbank:WP_230428211.1;Name=WP_230428211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003474436.1;locus_tag=LPH40_RS11720;product=hypothetical protein;protein_id=WP_230428211.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2789370 2789576 . + . ID=gene-LPH40_RS11725;Name=LPH40_RS11725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11725;old_locus_tag=LPH40_11725 NZ_CP087685.1 Protein Homology CDS 2789370 2789576 . + 0 ID=cds-WP_038273075.1-2;Parent=gene-LPH40_RS11725;Dbxref=Genbank:WP_038273075.1;Name=WP_038273075.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382571.1;locus_tag=LPH40_RS11725;product=hypothetical protein;protein_id=WP_038273075.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2789585 2789821 . + . ID=gene-LPH40_RS11730;Name=LPH40_RS11730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11730;old_locus_tag=LPH40_11730 NZ_CP087685.1 Protein Homology CDS 2789585 2789821 . + 0 ID=cds-WP_230428212.1-2;Parent=gene-LPH40_RS11730;Dbxref=Genbank:WP_230428212.1;Name=WP_230428212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382572.1;locus_tag=LPH40_RS11730;product=major capsid protein;protein_id=WP_230428212.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2790001 2791386 . + . ID=gene-LPH40_RS11735;Name=LPH40_RS11735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11735;old_locus_tag=LPH40_11735 NZ_CP087685.1 Protein Homology CDS 2790001 2791386 . + 0 ID=cds-WP_230428213.1-2;Parent=gene-LPH40_RS11735;Dbxref=Genbank:WP_230428213.1;Name=WP_230428213.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097844.1;locus_tag=LPH40_RS11735;product=furin-like repeat-containing protein;protein_id=WP_230428213.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2791389 2791733 . + . ID=gene-LPH40_RS11740;Name=LPH40_RS11740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11740;old_locus_tag=LPH40_11740 NZ_CP087685.1 Protein Homology CDS 2791389 2791733 . + 0 ID=cds-WP_038273069.1-2;Parent=gene-LPH40_RS11740;Dbxref=Genbank:WP_038273069.1;Name=WP_038273069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097845.1;locus_tag=LPH40_RS11740;product=DUF2523 family protein;protein_id=WP_038273069.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2791746 2792873 . + . ID=gene-LPH40_RS11745;Name=LPH40_RS11745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11745;old_locus_tag=LPH40_11745 NZ_CP087685.1 Protein Homology CDS 2791746 2792873 . + 0 ID=cds-WP_114867127.1-2;Parent=gene-LPH40_RS11745;Dbxref=Genbank:WP_114867127.1;Name=WP_114867127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012382577.1;locus_tag=LPH40_RS11745;product=hypothetical protein;protein_id=WP_114867127.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2792963 2793235 . + . ID=gene-LPH40_RS11750;Name=LPH40_RS11750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11750;old_locus_tag=LPH40_11750 NZ_CP087685.1 Protein Homology CDS 2792963 2793235 . + 0 ID=cds-WP_038272460.1;Parent=gene-LPH40_RS11750;Dbxref=Genbank:WP_038272460.1;Name=WP_038272460.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: protein motif:HMM:NF015947.2;locus_tag=LPH40_RS11750;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_038272460.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2793244 2793648 . + . ID=gene-LPH40_RS11755;Name=LPH40_RS11755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11755;old_locus_tag=LPH40_11755 NZ_CP087685.1 Protein Homology CDS 2793244 2793648 . + 0 ID=cds-WP_200866210.1;Parent=gene-LPH40_RS11755;Dbxref=Genbank:WP_200866210.1;Name=WP_200866210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851658.1;locus_tag=LPH40_RS11755;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_200866210.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2793711 2794055 . - . ID=gene-LPH40_RS11760;Name=LPH40_RS11760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11760;old_locus_tag=LPH40_11760 NZ_CP087685.1 Protein Homology CDS 2793711 2794055 . - 0 ID=cds-WP_038272464.1;Parent=gene-LPH40_RS11760;Dbxref=Genbank:WP_038272464.1;Name=WP_038272464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004087000.1;locus_tag=LPH40_RS11760;product=DUF3653 domain-containing protein;protein_id=WP_038272464.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2794046 2794378 . - . ID=gene-LPH40_RS11765;Name=LPH40_RS11765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11765;old_locus_tag=LPH40_11765 NZ_CP087685.1 Protein Homology CDS 2794046 2794378 . - 0 ID=cds-WP_268980386.1;Parent=gene-LPH40_RS11765;Dbxref=Genbank:WP_268980386.1;Name=WP_268980386.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023888.2;locus_tag=LPH40_RS11765;product=DUF3693 domain-containing protein;protein_id=WP_268980386.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2794875 2795489 . - . ID=gene-LPH40_RS11770;Name=LPH40_RS11770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11770;old_locus_tag=LPH40_11770 NZ_CP087685.1 Protein Homology CDS 2794875 2795489 . - 0 ID=cds-WP_081755477.1;Parent=gene-LPH40_RS11770;Dbxref=Genbank:WP_081755477.1;Name=WP_081755477.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852792.1;locus_tag=LPH40_RS11770;product=HNH endonuclease;protein_id=WP_081755477.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2795765 2796238 . - . ID=gene-LPH40_RS11775;Name=LPH40_RS11775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11775;old_locus_tag=LPH40_11775 NZ_CP087685.1 Protein Homology CDS 2795765 2796238 . - 0 ID=cds-WP_038272510.1;Parent=gene-LPH40_RS11775;Dbxref=Genbank:WP_038272510.1;Name=WP_038272510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448491.1;locus_tag=LPH40_RS11775;product=LEA type 2 family protein;protein_id=WP_038272510.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2797083 2798294 . + . ID=gene-LPH40_RS11780;Name=ftsY;gbkey=Gene;gene=ftsY;gene_biotype=protein_coding;locus_tag=LPH40_RS11780;old_locus_tag=LPH40_11780 NZ_CP087685.1 Protein Homology CDS 2797083 2798294 . + 0 ID=cds-WP_038272508.1;Parent=gene-LPH40_RS11780;Dbxref=Genbank:WP_038272508.1;Name=WP_038272508.1;Ontology_term=GO:0009306,GO:0003924,GO:0005047;gbkey=CDS;gene=ftsY;go_function=GTPase activity|0003924||IEA,signal recognition particle binding|0005047||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852793.1;locus_tag=LPH40_RS11780;product=signal recognition particle-docking protein FtsY;protein_id=WP_038272508.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2798386 2799435 . + . ID=gene-LPH40_RS11785;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=protein_coding;locus_tag=LPH40_RS11785;old_locus_tag=LPH40_11785 NZ_CP087685.1 Protein Homology CDS 2798386 2799435 . + 0 ID=cds-WP_038272506.1;Parent=gene-LPH40_RS11785;Dbxref=Genbank:WP_038272506.1;Name=WP_038272506.1;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0004844;gbkey=CDS;gene=mutY;go_function=uracil DNA N-glycosylase activity|0004844||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572892.1;locus_tag=LPH40_RS11785;product=A/G-specific adenine glycosylase;protein_id=WP_038272506.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2799470 2799742 . + . ID=gene-LPH40_RS11790;Name=LPH40_RS11790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11790;old_locus_tag=LPH40_11790 NZ_CP087685.1 Protein Homology CDS 2799470 2799742 . + 0 ID=cds-WP_038272505.1;Parent=gene-LPH40_RS11790;Dbxref=Genbank:WP_038272505.1;Name=WP_038272505.1;Ontology_term=GO:0005506;gbkey=CDS;go_function=iron ion binding|0005506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031337777.1;locus_tag=LPH40_RS11790;product=oxidative damage protection protein;protein_id=WP_038272505.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2800039 2800518 . + . ID=gene-LPH40_RS11795;Name=LPH40_RS11795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11795;old_locus_tag=LPH40_11795 NZ_CP087685.1 Protein Homology CDS 2800039 2800518 . + 0 ID=cds-WP_081755474.1;Parent=gene-LPH40_RS11795;Dbxref=Genbank:WP_081755474.1;Name=WP_081755474.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012337826.1;locus_tag=LPH40_RS11795;product=DUF2726 domain-containing protein;protein_id=WP_081755474.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2802399 2803133 . + . ID=gene-LPH40_RS11800;Name=LPH40_RS11800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11800;old_locus_tag=LPH40_11800 NZ_CP087685.1 Protein Homology CDS 2802399 2803133 . + 0 ID=cds-WP_038272500.1;Parent=gene-LPH40_RS11800;Dbxref=Genbank:WP_038272500.1;Name=WP_038272500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052063.1;locus_tag=LPH40_RS11800;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_038272500.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2803238 2803759 . + . ID=gene-LPH40_RS11805;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=LPH40_RS11805;old_locus_tag=LPH40_11805 NZ_CP087685.1 Protein Homology CDS 2803238 2803759 . + 0 ID=cds-WP_038272498.1;Parent=gene-LPH40_RS11805;Dbxref=Genbank:WP_038272498.1;Name=WP_038272498.1;Ontology_term=GO:0006310,GO:0008821;gbkey=CDS;gene=ruvC;go_function=crossover junction endodeoxyribonuclease activity|0008821||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097831.1;locus_tag=LPH40_RS11805;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_038272498.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2803848 2804432 . + . ID=gene-LPH40_RS11810;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=LPH40_RS11810;old_locus_tag=LPH40_11810 NZ_CP087685.1 Protein Homology CDS 2803848 2804432 . + 0 ID=cds-WP_038272496.1;Parent=gene-LPH40_RS11810;Dbxref=Genbank:WP_038272496.1;Name=WP_038272496.1;Ontology_term=GO:0006310,GO:0009378,GO:0009379;gbkey=CDS;gene=ruvA;go_component=Holliday junction helicase complex|0009379||IEA;go_function=four-way junction helicase activity|0009378||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258432.1;locus_tag=LPH40_RS11810;product=Holliday junction branch migration protein RuvA;protein_id=WP_038272496.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2804489 2806393 . + . ID=gene-LPH40_RS11815;Name=LPH40_RS11815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11815;old_locus_tag=LPH40_11815 NZ_CP087685.1 Protein Homology CDS 2804489 2806393 . + 0 ID=cds-WP_038272494.1;Parent=gene-LPH40_RS11815;Dbxref=Genbank:WP_038272494.1;Name=WP_038272494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572898.1;locus_tag=LPH40_RS11815;product=potassium transporter Kup;protein_id=WP_038272494.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2806502 2807533 . + . ID=gene-LPH40_RS11820;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=LPH40_RS11820;old_locus_tag=LPH40_11820 NZ_CP087685.1 Protein Homology CDS 2806502 2807533 . + 0 ID=cds-WP_038272492.1;Parent=gene-LPH40_RS11820;Dbxref=Genbank:WP_038272492.1;Name=WP_038272492.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0005524,GO:0009378;gbkey=CDS;gene=ruvB;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085423.1;locus_tag=LPH40_RS11820;product=Holliday junction branch migration DNA helicase RuvB;protein_id=WP_038272492.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2807560 2808012 . + . ID=gene-LPH40_RS11825;Name=ybgC;gbkey=Gene;gene=ybgC;gene_biotype=protein_coding;locus_tag=LPH40_RS11825;old_locus_tag=LPH40_11825 NZ_CP087685.1 Protein Homology CDS 2807560 2808012 . + 0 ID=cds-WP_038272516.1;Parent=gene-LPH40_RS11825;Dbxref=Genbank:WP_038272516.1;Name=WP_038272516.1;Ontology_term=GO:0005515,GO:0047617,GO:0005737;gbkey=CDS;gene=ybgC;go_component=cytoplasm|0005737||IEA;go_function=protein binding|0005515||IEA,acyl-CoA hydrolase activity|0047617||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003472570.1;locus_tag=LPH40_RS11825;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_038272516.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2808009 2808782 . + . ID=gene-LPH40_RS11830;Name=tolQ;gbkey=Gene;gene=tolQ;gene_biotype=protein_coding;locus_tag=LPH40_RS11830;old_locus_tag=LPH40_11830 NZ_CP087685.1 Protein Homology CDS 2808009 2808782 . + 0 ID=cds-WP_038272490.1;Parent=gene-LPH40_RS11830;Dbxref=Genbank:WP_038272490.1;Name=WP_038272490.1;Ontology_term=GO:1902600,GO:0015078,GO:0005886;gbkey=CDS;gene=tolQ;go_component=plasma membrane|0005886||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410752.1;locus_tag=LPH40_RS11830;product=protein TolQ;protein_id=WP_038272490.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2808815 2809258 . + . ID=gene-LPH40_RS11835;Name=LPH40_RS11835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11835;old_locus_tag=LPH40_11835 NZ_CP087685.1 Protein Homology CDS 2808815 2809258 . + 0 ID=cds-WP_038272488.1;Parent=gene-LPH40_RS11835;Dbxref=Genbank:WP_038272488.1;Name=WP_038272488.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852772.1;locus_tag=LPH40_RS11835;product=ExbD/TolR family protein;protein_id=WP_038272488.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2809248 2810273 . + . ID=gene-LPH40_RS11840;Name=tolA;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=LPH40_RS11840;old_locus_tag=LPH40_11840 NZ_CP087685.1 Protein Homology CDS 2809248 2810273 . + 0 ID=cds-WP_038272486.1;Parent=gene-LPH40_RS11840;Dbxref=Genbank:WP_038272486.1;Name=WP_038272486.1;Ontology_term=GO:0006810,GO:0005215,GO:0098567;gbkey=CDS;gene=tolA;go_component=periplasmic side of plasma membrane|0098567||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085419.1;locus_tag=LPH40_RS11840;product=cell envelope integrity protein TolA;protein_id=WP_038272486.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2810739 2812064 . + . ID=gene-LPH40_RS11845;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=LPH40_RS11845;old_locus_tag=LPH40_11845 NZ_CP087685.1 Protein Homology CDS 2810739 2812064 . + 0 ID=cds-WP_038272484.1;Parent=gene-LPH40_RS11845;Dbxref=Genbank:WP_038272484.1;Name=WP_038272484.1;Ontology_term=GO:0006810,GO:0005215,GO:0030288;gbkey=CDS;gene=tolB;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445349.1;locus_tag=LPH40_RS11845;product=Tol-Pal system beta propeller repeat protein TolB;protein_id=WP_038272484.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2812127 2812660 . + . ID=gene-LPH40_RS11850;Name=pal;gbkey=Gene;gene=pal;gene_biotype=protein_coding;locus_tag=LPH40_RS11850;old_locus_tag=LPH40_11850 NZ_CP087685.1 Protein Homology CDS 2812127 2812660 . + 0 ID=cds-WP_038272481.1;Parent=gene-LPH40_RS11850;Dbxref=Genbank:WP_038272481.1;Name=WP_038272481.1;Ontology_term=GO:0009279;gbkey=CDS;gene=pal;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010344309.1;locus_tag=LPH40_RS11850;product=peptidoglycan-associated lipoprotein Pal;protein_id=WP_038272481.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2812664 2813491 . + . ID=gene-LPH40_RS11855;Name=ybgF;gbkey=Gene;gene=ybgF;gene_biotype=protein_coding;locus_tag=LPH40_RS11855;old_locus_tag=LPH40_11855 NZ_CP087685.1 Protein Homology CDS 2812664 2813491 . + 0 ID=cds-WP_038272479.1;Parent=gene-LPH40_RS11855;Dbxref=Genbank:WP_038272479.1;Name=WP_038272479.1;Ontology_term=GO:0005515;gbkey=CDS;gene=ybgF;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572906.1;locus_tag=LPH40_RS11855;product=tol-pal system protein YbgF;protein_id=WP_038272479.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2813536 2814216 . + . ID=gene-LPH40_RS11860;Name=queE;gbkey=Gene;gene=queE;gene_biotype=protein_coding;locus_tag=LPH40_RS11860;old_locus_tag=LPH40_11860 NZ_CP087685.1 Protein Homology CDS 2813536 2814216 . + 0 ID=cds-WP_051482372.1;Parent=gene-LPH40_RS11860;Dbxref=Genbank:WP_051482372.1;Name=WP_051482372.1;Ontology_term=GO:0006400,GO:0051539,GO:1904047;gbkey=CDS;gene=queE;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159812.1;locus_tag=LPH40_RS11860;product=7-carboxy-7-deazaguanine synthase QueE;protein_id=WP_051482372.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2814287 2815036 . - . ID=gene-LPH40_RS11865;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=LPH40_RS11865;old_locus_tag=LPH40_11865 NZ_CP087685.1 Protein Homology CDS 2814287 2815036 . - 0 ID=cds-WP_038272477.1;Parent=gene-LPH40_RS11865;Dbxref=Genbank:WP_038272477.1;Name=WP_038272477.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmA;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167506.1;locus_tag=LPH40_RS11865;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase;protein_id=WP_038272477.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2815132 2815854 . + . ID=gene-LPH40_RS11870;Name=nfi;gbkey=Gene;gene=nfi;gene_biotype=protein_coding;locus_tag=LPH40_RS11870;old_locus_tag=LPH40_11870 NZ_CP087685.1 Protein Homology CDS 2815132 2815854 . + 0 ID=cds-WP_171898053.1;Parent=gene-LPH40_RS11870;Dbxref=Genbank:WP_171898053.1;Name=WP_171898053.1;Note=cleaves DNA at apurinic or apyrimidinic sites;Ontology_term=GO:0006281,GO:0004519;gbkey=CDS;gene=nfi;go_function=endonuclease activity|0004519||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010894358.1;locus_tag=LPH40_RS11870;product=deoxyribonuclease V;protein_id=WP_171898053.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2816017 2817549 . - . ID=gene-LPH40_RS11875;Name=LPH40_RS11875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11875;old_locus_tag=LPH40_11875 NZ_CP087685.1 Protein Homology CDS 2816017 2817549 . - 0 ID=cds-WP_038272473.1;Parent=gene-LPH40_RS11875;Dbxref=Genbank:WP_038272473.1;Name=WP_038272473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852766.1;locus_tag=LPH40_RS11875;product=peptide MFS transporter;protein_id=WP_038272473.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2818114 2818605 . + . ID=gene-LPH40_RS11880;Name=LPH40_RS11880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11880;old_locus_tag=LPH40_11880 NZ_CP087685.1 Protein Homology CDS 2818114 2818605 . + 0 ID=cds-WP_038272471.1;Parent=gene-LPH40_RS11880;Dbxref=Genbank:WP_038272471.1;Name=WP_038272471.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572911.1;locus_tag=LPH40_RS11880;product=glutathione peroxidase;protein_id=WP_038272471.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2818609 2819388 . - . ID=gene-LPH40_RS11885;Name=LPH40_RS11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11885;old_locus_tag=LPH40_11885 NZ_CP087685.1 Protein Homology CDS 2818609 2819388 . - 0 ID=cds-WP_038272469.1;Parent=gene-LPH40_RS11885;Dbxref=Genbank:WP_038272469.1;Name=WP_038272469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966679.1;locus_tag=LPH40_RS11885;product=ferredoxin--NADP reductase;protein_id=WP_038272469.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2819523 2821280 . - . ID=gene-LPH40_RS11890;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;locus_tag=LPH40_RS11890;old_locus_tag=LPH40_11890 NZ_CP087685.1 Protein Homology CDS 2819523 2821280 . - 0 ID=cds-WP_051482371.1;Parent=gene-LPH40_RS11890;Dbxref=Genbank:WP_051482371.1;Name=WP_051482371.1;Ontology_term=GO:0009228,GO:0051536;gbkey=CDS;gene=thiC;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011097836.1;locus_tag=LPH40_RS11890;product=phosphomethylpyrimidine synthase ThiC;protein_id=WP_051482371.1;transl_table=11 NZ_CP087685.1 cmsearch riboswitch 2821386 2821484 . - . ID=id-NZ_CP087685.1:2821386..2821484;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch NZ_CP087685.1 RefSeq gene 2821732 2823807 . + . ID=gene-LPH40_RS11895;Name=LPH40_RS11895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11895;old_locus_tag=LPH40_11895 NZ_CP087685.1 Protein Homology CDS 2821732 2823807 . + 0 ID=cds-WP_230428285.1;Parent=gene-LPH40_RS11895;Dbxref=Genbank:WP_230428285.1;Name=WP_230428285.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004572915.1;locus_tag=LPH40_RS11895;product=S46 family peptidase;protein_id=WP_230428285.1;transl_table=11 NZ_CP087685.1 RefSeq gene 2823914 2824558 . + . ID=gene-LPH40_RS11900;Name=LPH40_RS11900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LPH40_RS11900;old_locus_tag=LPH40_11900 NZ_CP087685.1 Protein Homology CDS 2823914 2824558 . + 0 ID=cds-WP_038272466.1;Parent=gene-LPH40_RS11900;Dbxref=Genbank:WP_038272466.1;Name=WP_038272466.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017910762.1;locus_tag=LPH40_RS11900;product=histidine phosphatase family protein;protein_id=WP_038272466.1;transl_table=11 ###