locus-tag class description CH48_RS00030 PF02504 Fatty acid synthesis protein CH48_RS00080 PF12111 Polyribonucleotide phosphorylase C terminal CH48_RS00080 PF10150 Ribonuclease E/G family CH48_RS00080 PF00575 S1 RNA binding domain CH48_RS00140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS00140 PF00384 Molybdopterin oxidoreductase CH48_RS00140 PF01568 Molydopterin dinucleotide binding domain CH48_RS00170 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS00170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS00185 PF03279 Bacterial lipid A biosynthesis acyltransferase CH48_RS00455 PF01063 Amino-transferase class IV CH48_RS00460 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_RS00460 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_RS00465 PF00550 Phosphopantetheine attachment site CH48_RS00475 PF00698 Acyl transferase domain CH48_RS00480 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH48_RS00480 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH48_RS00485 PF02504 Fatty acid synthesis protein CH48_RS00490 PF01783 Ribosomal L32p protein family CH48_RS00495 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH48_RS00500 PF02545 Maf-like protein CH48_RS00505 PF00849 RNA pseudouridylate synthase CH48_RS00505 PF01479 S4 domain CH48_RS00510 PF12111 Polyribonucleotide phosphorylase C terminal CH48_RS00510 PF00575 S1 RNA binding domain CH48_RS00510 PF10150 Ribonuclease E/G family CH48_RS00515 PF03992 Antibiotic biosynthesis monooxygenase CH48_RS00520 PF01979 Amidohydrolase family CH48_RS00525 PF06183 DinI-like family CH48_RS00530 PF13991 BssS protein family CH48_RS00535 PF01266 FAD dependent oxidoreductase CH48_RS00540 PF00196 Bacterial regulatory proteins, luxR family CH48_RS00545 PF01594 AI-2E family transporter CH48_RS00550 PF00581 Rhodanese-like domain CH48_RS00550 PF12368 Rhodanase C-terminal CH48_RS00550 PF17773 UPF0176 acylphosphatase like domain CH48_RS00560 PF01568 Molydopterin dinucleotide binding domain CH48_RS00560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS00560 PF00384 Molybdopterin oxidoreductase CH48_RS00565 PF03916 Polysulphide reductase, NrfD CH48_RS00570 PF13247 4Fe-4S dicluster domain CH48_RS00575 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS00575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS00580 PF00072 Response regulator receiver domain CH48_RS00580 PF00196 Bacterial regulatory proteins, luxR family CH48_RS00585 PF03279 Bacterial lipid A biosynthesis acyltransferase CH48_RS00600 PF07681 DoxX CH48_RS00610 PF00854 POT family CH48_RS00630 PF07119 Protein of unknown function (DUF1375) CH48_RS00635 PF00535 Glycosyl transferase family 2 CH48_RS00640 PF04349 Periplasmic glucan biosynthesis protein, MdoG CH48_RS00645 PF01757 Acyltransferase family CH48_RS00660 PF02080 TrkA-C domain CH48_RS00660 PF00999 Sodium/hydrogen exchanger family CH48_RS00660 PF03471 Transporter associated domain CH48_RS00670 PF00765 Autoinducer synthase CH48_RS00675 PF03472 Autoinducer binding domain CH48_RS00675 PF00196 Bacterial regulatory proteins, luxR family CH48_RS00685 PF03918 Cytochrome C biogenesis protein CH48_RS00690 PF08534 Redoxin CH48_RS00695 PF01578 Cytochrome C assembly protein CH48_RS00695 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH48_RS00700 PF03916 Polysulphide reductase, NrfD CH48_RS00705 PF13247 4Fe-4S dicluster domain CH48_RS00705 PF00037 4Fe-4S binding domain CH48_RS00710 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CH48_RS00710 PF13435 Cytochrome c554 and c-prime CH48_RS00715 PF02335 Cytochrome c552 CH48_RS00725 PF04358 DsrC like protein CH48_RS00730 PF00708 Acylphosphatase CH48_RS00745 PF10672 S-adenosylmethionine-dependent methyltransferase CH48_RS00745 PF17785 PUA-like domain CH48_RS00750 PF08755 Hemimethylated DNA-binding protein YccV like CH48_RS00755 PF13380 CoA binding domain CH48_RS00760 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH48_RS00765 PF02142 MGS-like domain CH48_RS00770 PF13361 UvrD-like helicase C-terminal domain CH48_RS00770 PF12462 DNA helicase IV / RNA helicase N terminal CH48_RS00770 PF00580 UvrD/REP helicase N-terminal domain CH48_RS00775 PF03733 Inner membrane component domain CH48_RS00780 PF12805 FUSC-like inner membrane protein yccS CH48_RS00785 PF04994 TfoX C-terminal domain CH48_RS00785 PF04993 TfoX N-terminal domain CH48_RS00790 PF03846 Cell division inhibitor SulA CH48_RS00795 PF01389 OmpA-like transmembrane domain CH48_RS00795 PF00691 OmpA family CH48_RS00800 PF06303 MatP N-terminal domain CH48_RS00800 PF17414 MatP C-terminal ribbon-helix-helix domain CH48_RS00805 PF05362 Lon protease (S16) C-terminal proteolytic domain CH48_RS00805 PF13654 AAA domain CH48_RS00810 PF07977 FabA-like domain CH48_RS00825 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_RS00825 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_RS00830 PF03886 ABC-type transport auxiliary lipoprotein component CH48_RS00835 PF02470 MlaD protein CH48_RS00840 PF04403 Paraquat-inducible protein A CH48_RS00845 PF12848 ABC transporter CH48_RS00845 PF00005 ABC transporter CH48_RS00845 PF16326 ABC transporter C-terminal domain CH48_RS00850 PF01170 Putative RNA methylase family UPF0020 CH48_RS00850 PF10672 S-adenosylmethionine-dependent methyltransferase CH48_RS00850 PF02926 THUMP domain CH48_RS00855 PF03473 MOSC domain CH48_RS00855 PF03476 MOSC N-terminal beta barrel domain CH48_RS00855 PF00111 2Fe-2S iron-sulfur cluster binding domain CH48_RS00860 PF07126 Cell-division protein ZapC CH48_RS00865 PF01180 Dihydroorotate dehydrogenase CH48_RS00870 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH48_RS00870 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH48_RS00870 PF01433 Peptidase family M1 domain CH48_RS00875 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH48_RS00875 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH48_RS00880 PF00152 tRNA synthetases class II (D, K and N) CH48_RS00880 PF01336 OB-fold nucleic acid binding domain CH48_RS00885 PF00267 Gram-negative porin CH48_RS00890 PF00155 Aminotransferase class I and II CH48_RS00900 PF00563 EAL domain CH48_RS00900 PF12792 CSS motif domain associated with EAL CH48_RS00905 PF00753 Metallo-beta-lactamase superfamily CH48_RS00910 PF05951 Bacterial protein of unknown function (DUF882) CH48_RS00915 PF01471 Putative peptidoglycan binding domain CH48_RS00915 PF03734 L,D-transpeptidase catalytic domain CH48_RS00920 PF16330 MukB hinge domain CH48_RS00920 PF04310 MukB N-terminal CH48_RS00925 PF04288 MukE-like family CH48_RS00930 PF17192 MukF middle domain CH48_RS00930 PF17193 MukF C-terminal domain CH48_RS00930 PF03882 MukF winged-helix domain CH48_RS00935 PF13847 Methyltransferase domain CH48_RS00940 PF02698 DUF218 domain CH48_RS00945 PF01636 Phosphotransferase enzyme family CH48_RS00950 PF02348 Cytidylyltransferase CH48_RS00955 PF03966 Trm112p-like protein CH48_RS00960 PF00313 'Cold-shock' DNA-binding domain CH48_RS00965 PF00313 'Cold-shock' DNA-binding domain CH48_RS00970 PF07063 Domain of unknown function (DUF1338) CH48_RS00975 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH48_RS00980 PF00664 ABC transporter transmembrane region CH48_RS00980 PF00005 ABC transporter CH48_RS00985 PF00753 Metallo-beta-lactamase superfamily CH48_RS00985 PF03772 Competence protein CH48_RS00990 PF00216 Bacterial DNA-binding protein CH48_RS00995 PF00575 S1 RNA binding domain CH48_RS01000 PF02224 Cytidylate kinase CH48_RS01005 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH48_RS01010 PF00266 Aminotransferase class-V CH48_RS01015 PF04239 Protein of unknown function (DUF421) CH48_RS01020 PF00710 Asparaginase, N-terminal CH48_RS01020 PF17763 Glutaminase/Asparaginase C-terminal domain CH48_RS01025 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH48_RS01025 PF18381 YcaO cyclodehydratase C-terminal domain CH48_RS01030 PF01226 Formate/nitrite transporter CH48_RS01035 PF01228 Glycine radical CH48_RS01035 PF02901 Pyruvate formate lyase-like CH48_RS01040 PF04055 Radical SAM superfamily CH48_RS01045 PF07690 Major Facilitator Superfamily CH48_RS01055 PF02403 Seryl-tRNA synthetase N-terminal domain CH48_RS01055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH48_RS01060 PF16193 AAA C-terminal domain CH48_RS01060 PF12002 MgsA AAA+ ATPase C terminal CH48_RS01060 PF00004 ATPase family associated with various cellular activities (AAA) CH48_RS01065 PF03548 Outer membrane lipoprotein carrier protein LolA CH48_RS01070 PF09397 Ftsk gamma domain CH48_RS01070 PF01580 FtsK/SpoIIIE family CH48_RS01070 PF17854 FtsK alpha domain CH48_RS01070 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH48_RS01075 PF01037 Lrp/AsnC ligand binding domain CH48_RS01080 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_RS01085 PF00005 ABC transporter CH48_RS01085 PF00664 ABC transporter transmembrane region CH48_RS01090 PF00005 ABC transporter CH48_RS01090 PF00664 ABC transporter transmembrane region CH48_RS01095 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH48_RS01100 PF01176 Translation initiation factor 1A / IF-1 CH48_RS01105 PF02861 Clp amino terminal domain, pathogenicity island component CH48_RS01105 PF00004 ATPase family associated with various cellular activities (AAA) CH48_RS01105 PF10431 C-terminal, D2-small domain, of ClpB protein CH48_RS01105 PF17871 AAA lid domain CH48_RS01105 PF07724 AAA domain (Cdc48 subfamily) CH48_RS01110 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH48_RS01120 PF00313 'Cold-shock' DNA-binding domain CH48_RS01125 PF00005 ABC transporter CH48_RS01125 PF02687 FtsX-like permease family CH48_RS01125 PF12704 MacB-like periplasmic core domain CH48_RS01130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_RS01135 PF04393 Protein of unknown function (DUF535) CH48_RS01140 PF11398 Protein of unknown function (DUF2813) CH48_RS01145 PF03956 Lysine exporter LysO CH48_RS01150 PF03063 Prismane/CO dehydrogenase family CH48_RS01155 PF00175 Oxidoreductase NAD-binding domain CH48_RS01155 PF00111 2Fe-2S iron-sulfur cluster binding domain CH48_RS01155 PF00970 Oxidoreductase FAD-binding domain CH48_RS01160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_RS01160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_RS01160 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_RS01165 PF04072 Leucine carboxyl methyltransferase CH48_RS01170 PF01212 Beta-eliminating lyase CH48_RS01175 PF13460 NAD(P)H-binding CH48_RS01175 PF11066 Protein of unknown function (DUF2867) CH48_RS01180 PF01370 NAD dependent epimerase/dehydratase family CH48_RS01185 PF12883 Protein of unknown function (DUF3828) CH48_RS01190 PF00005 ABC transporter CH48_RS01195 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS01200 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS01205 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS01210 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS01215 PF05958 tRNA (Uracil-5-)-methyltransferase CH48_RS01220 PF10767 Protein of unknown function (DUF2593) CH48_RS01225 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS01230 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS01235 PF08402 TOBE domain CH48_RS01235 PF00005 ABC transporter CH48_RS01240 PF13416 Bacterial extracellular solute-binding protein CH48_RS01245 PF10722 Putative bacterial sensory transduction regulator CH48_RS01250 PF07214 Protein of unknown function (DUF1418) CH48_RS01255 PF00462 Glutaredoxin CH48_RS01260 PF06826 Predicted Permease Membrane Region CH48_RS01260 PF02080 TrkA-C domain CH48_RS01270 PF01569 PAP2 superfamily CH48_RS01275 PF01791 DeoC/LacD family aldolase CH48_RS01280 PF08220 DeoR-like helix-turn-helix domain CH48_RS01280 PF00455 DeoR C terminal sensor domain CH48_RS01290 PF03315 Serine dehydratase beta chain CH48_RS01290 PF03313 Serine dehydratase alpha chain CH48_RS01300 PF07943 Penicillin-binding protein 5, C-terminal domain CH48_RS01300 PF00768 D-alanyl-D-alanine carboxypeptidase CH48_RS01305 PF00291 Pyridoxal-phosphate dependent enzyme CH48_RS01305 PF00571 CBS domain CH48_RS01310 PF01053 Cys/Met metabolism PLP-dependent enzyme CH48_RS01315 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS01320 PF09383 NIL domain CH48_RS01320 PF00005 ABC transporter CH48_RS01325 PF03180 NLPA lipoprotein CH48_RS01340 PF00043 Glutathione S-transferase, C-terminal domain CH48_RS01340 PF13417 Glutathione S-transferase, N-terminal domain CH48_RS01345 PF07715 TonB-dependent Receptor Plug Domain CH48_RS01345 PF00593 TonB dependent receptor CH48_RS01350 PF00005 ABC transporter CH48_RS01355 PF01032 FecCD transport family CH48_RS01360 PF00324 Amino acid permease CH48_RS01365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS01365 PF03466 LysR substrate binding domain CH48_RS01380 PF03601 Conserved hypothetical protein 698 CH48_RS01385 PF01261 Xylose isomerase-like TIM barrel CH48_RS01390 PF00577 Outer membrane usher protein CH48_RS01390 PF13953 PapC C-terminal domain CH48_RS01390 PF13954 PapC N-terminal domain CH48_RS01395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_RS01395 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_RS01405 PF17550 Family of unknown function CH48_RS01410 PF00486 Transcriptional regulatory protein, C terminal CH48_RS01415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH48_RS01415 PF02378 Phosphotransferase system, EIIC CH48_RS01420 PF00294 pfkB family carbohydrate kinase CH48_RS01425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_RS01425 PF00381 PTS HPr component phosphorylation site CH48_RS01430 PF00293 NUDIX domain CH48_RS01430 PF13344 Haloacid dehalogenase-like hydrolase CH48_RS01435 PF03264 NapC/NirT cytochrome c family, N-terminal region CH48_RS01440 PF01568 Molydopterin dinucleotide binding domain CH48_RS01440 PF18364 Molybdopterin oxidoreductase N-terminal domain CH48_RS01440 PF00384 Molybdopterin oxidoreductase CH48_RS01445 PF03692 Putative zinc- or iron-chelating domain CH48_RS01450 PF03222 Tryptophan/tyrosine permease family CH48_RS01455 PF08207 Elongation factor P (EF-P) KOW-like domain CH48_RS01455 PF09285 Elongation factor P, C-terminal CH48_RS01455 PF01132 Elongation factor P (EF-P) OB domain CH48_RS01460 PF03786 D-mannonate dehydratase (UxuA) CH48_RS01470 PF08125 Mannitol dehydrogenase C-terminal domain CH48_RS01470 PF01232 Mannitol dehydrogenase Rossmann domain CH48_RS01475 PF00392 Bacterial regulatory proteins, gntR family CH48_RS01475 PF07729 FCD domain CH48_RS01485 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH48_RS01485 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH48_RS01490 PF01569 PAP2 superfamily CH48_RS01495 PF00877 NlpC/P60 family CH48_RS01505 PF12792 CSS motif domain associated with EAL CH48_RS01505 PF00563 EAL domain CH48_RS01510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_RS01515 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS01520 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS01520 PF12911 N-terminal TM domain of oligopeptide transport permease C CH48_RS01525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_RS01525 PF00005 ABC transporter CH48_RS01530 PF13989 YejG-like protein CH48_RS01535 PF07690 Major Facilitator Superfamily CH48_RS01540 PF00849 RNA pseudouridylate synthase CH48_RS01540 PF01479 S4 domain CH48_RS01545 PF04851 Type III restriction enzyme, res subunit CH48_RS01545 PF00271 Helicase conserved C-terminal domain CH48_RS01550 PF01386 Ribosomal L25p family CH48_RS01555 PF04245 37-kD nucleoid-associated bacterial protein CH48_RS01560 PF07208 Protein of unknown function (DUF1414) CH48_RS01565 PF11893 Domain of unknown function (DUF3413) CH48_RS01565 PF00884 Sulfatase CH48_RS01585 PF00872 Transposase, Mutator family CH48_RS01615 PF00194 Eukaryotic-type carbonic anhydrase CH48_RS01620 PF00232 Glycosyl hydrolase family 1 CH48_RS01625 PF00367 phosphotransferase system, EIIB CH48_RS01625 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH48_RS01625 PF02378 Phosphotransferase system, EIIC CH48_RS01630 PF01380 SIS domain CH48_RS01630 PF01418 Helix-turn-helix domain, rpiR family CH48_RS01650 PF06530 Phage antitermination protein Q CH48_RS01660 PF06183 DinI-like family CH48_RS01665 PF01278 Omptin family CH48_RS01670 PF02743 Cache domain CH48_RS01670 PF00672 HAMP domain CH48_RS01670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_RS01675 PF12706 Beta-lactamase superfamily domain CH48_RS01685 PF00144 Beta-lactamase CH48_RS01700 PF00267 Gram-negative porin CH48_RS01720 PF07690 Major Facilitator Superfamily CH48_RS01725 PF01627 Hpt domain CH48_RS01725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS01725 PF16359 RcsD-ABL domain CH48_RS01730 PF00196 Bacterial regulatory proteins, luxR family CH48_RS01730 PF00072 Response regulator receiver domain CH48_RS01735 PF00072 Response regulator receiver domain CH48_RS01735 PF09456 RcsC Alpha-Beta-Loop (ABL) CH48_RS01735 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS01735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS01745 PF00521 DNA gyrase/topoisomerase IV, subunit A CH48_RS01745 PF03989 DNA gyrase C-terminal domain, beta-propeller CH48_RS01755 PF02867 Ribonucleotide reductase, barrel domain CH48_RS01755 PF03477 ATP cone domain CH48_RS01755 PF00317 Ribonucleotide reductase, all-alpha domain CH48_RS01760 PF00268 Ribonucleotide reductase, small chain CH48_RS01765 PF00111 2Fe-2S iron-sulfur cluster binding domain CH48_RS01770 PF03974 Ecotin CH48_RS01775 PF00082 Subtilase family CH48_RS01790 PF00994 Probable molybdopterin binding domain CH48_RS01795 PF03222 Tryptophan/tyrosine permease family CH48_RS01800 PF07437 YfaZ precursor CH48_RS01805 PF06628 Catalase-related immune-responsive CH48_RS01805 PF00199 Catalase CH48_RS01810 PF00501 AMP-binding enzyme CH48_RS01810 PF13193 AMP-binding enzyme C-terminal domain CH48_RS01815 PF13378 Enolase C-terminal domain-like CH48_RS01820 PF00378 Enoyl-CoA hydratase/isomerase CH48_RS01825 PF12697 Alpha/beta hydrolase family CH48_RS01830 PF16582 Middle domain of thiamine pyrophosphate CH48_RS01830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_RS01830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_RS01835 PF00425 chorismate binding enzyme CH48_RS01840 PF00872 Transposase, Mutator family CH48_RS01845 PF05957 Bacterial protein of unknown function (DUF883) CH48_RS01855 PF03928 Haem-degrading CH48_RS01860 PF07690 Major Facilitator Superfamily CH48_RS01865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_RS01865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH48_RS01875 PF00106 short chain dehydrogenase CH48_RS01880 PF01202 Shikimate kinase CH48_RS01890 PF06496 Protein of unknown function (DUF1097) CH48_RS01900 PF00361 Proton-conducting membrane transporter CH48_RS01905 PF00361 Proton-conducting membrane transporter CH48_RS01910 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH48_RS01910 PF00361 Proton-conducting membrane transporter CH48_RS01915 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH48_RS01920 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH48_RS01925 PF12838 4Fe-4S dicluster domain CH48_RS01930 PF00146 NADH dehydrogenase CH48_RS01935 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS01935 PF00384 Molybdopterin oxidoreductase CH48_RS01935 PF01568 Molydopterin dinucleotide binding domain CH48_RS01935 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH48_RS01940 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH48_RS01940 PF10531 SLBB domain CH48_RS01940 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH48_RS01950 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH48_RS01950 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH48_RS01955 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH48_RS01960 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH48_RS01965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS01965 PF03466 LysR substrate binding domain CH48_RS01970 PF00155 Aminotransferase class I and II CH48_RS01980 PF02080 TrkA-C domain CH48_RS01980 PF03600 Citrate transporter CH48_RS01990 PF13419 Haloacid dehalogenase-like hydrolase CH48_RS01995 PF03887 YfbU domain CH48_RS02000 PF04217 Protein of unknown function, DUF412 CH48_RS02005 PF00871 Acetokinase family CH48_RS02010 PF07085 DRTGG domain CH48_RS02010 PF01515 Phosphate acetyl/butaryl transferase CH48_RS02015 PF00356 Bacterial regulatory proteins, lacI family CH48_RS02015 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_RS02020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_RS02030 PF03611 PTS system sugar-specific permease component CH48_RS02045 PF00293 NUDIX domain CH48_RS02050 PF12850 Calcineurin-like phosphoesterase superfamily domain CH48_RS02060 PF08338 Domain of unknown function (DUF1731) CH48_RS02060 PF01370 NAD dependent epimerase/dehydratase family CH48_RS02070 PF00005 ABC transporter CH48_RS02075 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS02080 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS02085 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS02090 PF02441 Flavoprotein CH48_RS02095 PF00156 Phosphoribosyl transferase domain CH48_RS02100 PF02674 Colicin V production protein CH48_RS02105 PF05036 Sporulation related domain CH48_RS02110 PF08245 Mur ligase middle domain CH48_RS02110 PF02875 Mur ligase family, glutamate ligase domain CH48_RS02115 PF01039 Carboxyl transferase domain CH48_RS02115 PF17848 Acetyl-coA carboxylase zinc finger domain CH48_RS02120 PF09335 SNARE associated Golgi protein CH48_RS02125 PF01416 tRNA pseudouridine synthase CH48_RS02130 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH48_RS02130 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH48_RS02150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH48_RS02150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_RS02150 PF11890 Domain of unknown function (DUF3410) CH48_RS02160 PF00892 EamA-like transporter family CH48_RS02165 PF00892 EamA-like transporter family CH48_RS02170 PF00155 Aminotransferase class I and II CH48_RS02175 PF00578 AhpC/TSA family CH48_RS02185 PF11412 Disulphide bond corrector protein DsbC CH48_RS02185 PF02683 Cytochrome C biogenesis protein transmembrane region CH48_RS02200 PF03600 Citrate transporter CH48_RS02205 PF00328 Histidine phosphatase superfamily (branch 2) CH48_RS02210 PF00356 Bacterial regulatory proteins, lacI family CH48_RS02215 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH48_RS02220 PF02378 Phosphotransferase system, EIIC CH48_RS02225 PF00232 Glycosyl hydrolase family 1 CH48_RS02230 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH48_RS02240 PF01177 Asp/Glu/Hydantoin racemase CH48_RS02245 PF17151 Periplasmic sensor domain CH48_RS02245 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS02250 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_RS02250 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_RS02255 PF01266 FAD dependent oxidoreductase CH48_RS02255 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH48_RS02260 PF08891 YfcL protein CH48_RS02265 PF04315 Elongation factor P hydroxylase CH48_RS02270 PF01925 Sulfite exporter TauE/SafE CH48_RS02275 PF03411 Penicillin-insensitive murein endopeptidase CH48_RS02280 PF01264 Chorismate synthase CH48_RS02285 PF05175 Methyltransferase small domain CH48_RS02290 PF01713 Smr domain CH48_RS02295 PF00300 Histidine phosphatase superfamily (branch 1) CH48_RS02300 PF00378 Enoyl-CoA hydratase/isomerase CH48_RS02300 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH48_RS02300 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH48_RS02305 PF00108 Thiolase, N-terminal domain CH48_RS02305 PF02803 Thiolase, C-terminal domain CH48_RS02310 PF04175 Protein of unknown function (DUF406) CH48_RS02315 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH48_RS02320 PF04333 MlaA lipoprotein CH48_RS02325 PF03918 Cytochrome C biogenesis protein CH48_RS02330 PF03918 Cytochrome C biogenesis protein CH48_RS02335 PF08534 Redoxin CH48_RS02340 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH48_RS02340 PF01578 Cytochrome C assembly protein CH48_RS02345 PF03100 CcmE CH48_RS02350 PF04995 Heme exporter protein D (CcmD) CH48_RS02355 PF01578 Cytochrome C assembly protein CH48_RS02360 PF03379 CcmB protein CH48_RS02365 PF00005 ABC transporter CH48_RS02375 PF02685 Glucokinase CH48_RS02385 PF03466 LysR substrate binding domain CH48_RS02385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS02390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_RS02390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_RS02390 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_RS02395 PF00248 Aldo/keto reductase family CH48_RS02405 PF01566 Natural resistance-associated macrophage protein CH48_RS02410 PF07670 Nucleoside recognition CH48_RS02410 PF01773 Na+ dependent nucleoside transporter N-terminus CH48_RS02410 PF07662 Na+ dependent nucleoside transporter C-terminus CH48_RS02435 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH48_RS02465 PF12843 Putative quorum-sensing-regulated virulence factor CH48_RS02470 PF12826 Helix-hairpin-helix motif CH48_RS02470 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH48_RS02470 PF03120 NAD-dependent DNA ligase OB-fold domain CH48_RS02470 PF01653 NAD-dependent DNA ligase adenylation domain CH48_RS02470 PF00533 BRCA1 C Terminus (BRCT) domain CH48_RS02475 PF04354 ZipA, C-terminal FtsZ-binding domain CH48_RS02485 PF00291 Pyridoxal-phosphate dependent enzyme CH48_RS02490 PF00381 PTS HPr component phosphorylation site CH48_RS02495 PF02896 PEP-utilising enzyme, TIM barrel domain CH48_RS02495 PF00391 PEP-utilising enzyme, mobile domain CH48_RS02495 PF05524 PEP-utilising enzyme, N-terminal CH48_RS02500 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH48_RS02505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS02505 PF16527 Two-component sensor protein CpxA, periplasmic domain CH48_RS02505 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS02505 PF00672 HAMP domain CH48_RS02510 PF00486 Transcriptional regulatory protein, C terminal CH48_RS02510 PF00072 Response regulator receiver domain CH48_RS02515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_RS02520 PF00005 ABC transporter CH48_RS02520 PF02687 FtsX-like permease family CH48_RS02520 PF12704 MacB-like periplasmic core domain CH48_RS02525 PF00291 Pyridoxal-phosphate dependent enzyme CH48_RS02530 PF00005 ABC transporter CH48_RS02535 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS02540 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS02550 PF07690 Major Facilitator Superfamily CH48_RS02555 PF01380 SIS domain CH48_RS02555 PF01418 Helix-turn-helix domain, rpiR family CH48_RS02560 PF04074 YhcH/YjgK/YiaL CH48_RS02565 PF00480 ROK family CH48_RS02570 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH48_RS02575 PF00701 Dihydrodipicolinate synthetase family CH48_RS02585 PF04261 Dyp-type peroxidase family CH48_RS02590 PF06572 Protein of unknown function (DUF1131) CH48_RS02595 PF04076 Bacterial OB fold (BOF) protein CH48_RS02600 PF00583 Acetyltransferase (GNAT) family CH48_RS02605 PF01218 Coproporphyrinogen III oxidase CH48_RS02610 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH48_RS02615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS02615 PF03466 LysR substrate binding domain CH48_RS02630 PF01515 Phosphate acetyl/butaryl transferase CH48_RS02630 PF03949 Malic enzyme, NAD binding domain CH48_RS02630 PF00390 Malic enzyme, N-terminal domain CH48_RS02635 PF00293 NUDIX domain CH48_RS02640 PF03264 NapC/NirT cytochrome c family, N-terminal region CH48_RS02645 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH48_RS02650 PF00384 Molybdopterin oxidoreductase CH48_RS02650 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH48_RS02650 PF01568 Molydopterin dinucleotide binding domain CH48_RS02650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS02655 PF03927 NapD protein CH48_RS02665 PF00072 Response regulator receiver domain CH48_RS02665 PF00196 Bacterial regulatory proteins, luxR family CH48_RS02675 PF00873 AcrB/AcrD/AcrF family CH48_RS02690 PF03960 ArsC family CH48_RS02695 PF01546 Peptidase family M20/M25/M40 CH48_RS02695 PF07687 Peptidase dimerisation domain CH48_RS02700 PF02557 D-alanyl-D-alanine carboxypeptidase CH48_RS02705 PF13980 Uncharacterised protein family (UPF0370) CH48_RS02715 PF13505 Outer membrane protein beta-barrel domain CH48_RS02730 PF02371 Transposase IS116/IS110/IS902 family CH48_RS02730 PF01548 Transposase CH48_RS02735 PF03245 Bacteriophage Rz lysis protein CH48_RS02745 PF02230 Phospholipase/Carboxylesterase CH48_RS02760 PF17176 tRNA-binding domain CH48_RS02760 PF05127 Helicase CH48_RS02760 PF13718 GNAT acetyltransferase 2 CH48_RS02765 PF04284 Protein of unknown function (DUF441) CH48_RS02770 PF04228 Putative neutral zinc metallopeptidase CH48_RS02775 PF01259 SAICAR synthetase CH48_RS02780 PF06804 NlpB/DapX lipoprotein CH48_RS02785 PF00701 Dihydrodipicolinate synthetase family CH48_RS02790 PF01842 ACT domain CH48_RS02795 PF00578 AhpC/TSA family CH48_RS02800 PF01594 AI-2E family transporter CH48_RS02805 PF07720 Tetratricopeptide repeat CH48_RS02805 PF01435 Peptidase family M48 CH48_RS02810 PF03960 ArsC family CH48_RS02815 PF00308 Bacterial dnaA protein CH48_RS02820 PF00860 Permease family CH48_RS02830 PF00586 AIR synthase related protein, N-terminal domain CH48_RS02830 PF02769 AIR synthase related protein, C-terminal domain CH48_RS02835 PF00551 Formyl transferase CH48_RS02840 PF13302 Acetyltransferase (GNAT) domain CH48_RS02850 PF00005 ABC transporter CH48_RS02855 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS02860 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS02865 PF13089 Polyphosphate kinase N-terminal domain CH48_RS02865 PF13090 Polyphosphate kinase C-terminal domain 2 CH48_RS02865 PF02503 Polyphosphate kinase middle domain CH48_RS02865 PF17941 Polyphosphate kinase C-terminal domain 1 CH48_RS02870 PF02541 Ppx/GppA phosphatase family CH48_RS02880 PF03448 MgtE intracellular N domain CH48_RS02880 PF01769 Divalent cation transporter CH48_RS02880 PF00571 CBS domain CH48_RS02885 PF05231 MASE1 CH48_RS02885 PF13426 PAS domain CH48_RS02885 PF08448 PAS fold CH48_RS02885 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS02885 PF00563 EAL domain CH48_RS02885 PF08447 PAS fold CH48_RS02890 PF00012 Hsp70 protein CH48_RS02895 PF13533 Biotin-lipoyl like CH48_RS02900 PF00873 AcrB/AcrD/AcrF family CH48_RS02905 PF00873 AcrB/AcrD/AcrF family CH48_RS02910 PF07690 Major Facilitator Superfamily CH48_RS02915 PF00672 HAMP domain CH48_RS02915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS02915 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS02920 PF00072 Response regulator receiver domain CH48_RS02920 PF00486 Transcriptional regulatory protein, C terminal CH48_RS02925 PF07411 Domain of unknown function (DUF1508) CH48_RS02930 PF01136 Peptidase family U32 CH48_RS02930 PF16325 Peptidase family U32 C-terminal domain CH48_RS02935 PF00781 Diacylglycerol kinase catalytic domain CH48_RS02940 PF03608 PTS system enzyme II sorbitol-specific factor CH48_RS02945 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CH48_RS02945 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CH48_RS02950 PF03829 PTS system glucitol/sorbitol-specific IIA component CH48_RS02955 PF00106 short chain dehydrogenase CH48_RS02960 PF06923 Glucitol operon activator protein (GutM) CH48_RS02965 PF00455 DeoR C terminal sensor domain CH48_RS02965 PF08220 DeoR-like helix-turn-helix domain CH48_RS02970 PF00571 CBS domain CH48_RS02970 PF01380 SIS domain CH48_RS02985 PF08543 Phosphomethylpyrimidine kinase CH48_RS03000 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH48_RS03000 PF00034 Cytochrome c CH48_RS03005 PF05199 GMC oxidoreductase CH48_RS03005 PF00732 GMC oxidoreductase CH48_RS03020 PF00117 Glutamine amidotransferase class-I CH48_RS03020 PF00958 GMP synthase C terminal domain CH48_RS03020 PF02540 NAD synthase CH48_RS03025 PF00478 IMP dehydrogenase / GMP reductase domain CH48_RS03025 PF00571 CBS domain CH48_RS03030 PF13742 OB-fold nucleic acid binding domain CH48_RS03030 PF02601 Exonuclease VII, large subunit CH48_RS03035 PF07191 zinc-ribbons CH48_RS03050 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH48_RS03050 PF01926 50S ribosome-binding GTPase CH48_RS03060 PF13360 PQQ-like domain CH48_RS03065 PF09976 Tetratricopeptide repeat-like domain CH48_RS03070 PF13393 Histidyl-tRNA synthetase CH48_RS03070 PF03129 Anticodon binding domain CH48_RS03075 PF04551 GcpE protein CH48_RS03080 PF13464 Domain of unknown function (DUF4115) CH48_RS03090 PF04055 Radical SAM superfamily CH48_RS03095 PF00334 Nucleoside diphosphate kinase CH48_RS03105 PF00905 Penicillin binding protein transpeptidase domain CH48_RS03105 PF06832 Penicillin-Binding Protein C-terminus Family CH48_RS03105 PF00912 Transglycosylase CH48_RS03110 PF00207 Alpha-2-macroglobulin family CH48_RS03110 PF01835 MG2 domain CH48_RS03110 PF17962 Bacterial macroglobulin domain 6 CH48_RS03110 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH48_RS03110 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CH48_RS03110 PF07678 A-macroglobulin TED domain CH48_RS03110 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH48_RS03110 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH48_RS03110 PF07703 Alpha-2-macroglobulin bait region domain CH48_RS03115 PF03212 Pertactin CH48_RS03115 PF03797 Autotransporter beta-domain CH48_RS03115 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH48_RS03120 PF14581 SseB protein C-terminal domain CH48_RS03120 PF07179 SseB protein N-terminal domain CH48_RS03125 PF12404 Peptidase CH48_RS03125 PF00883 Cytosol aminopeptidase family, catalytic domain CH48_RS03130 PF04384 Iron-sulphur cluster assembly CH48_RS03135 PF00111 2Fe-2S iron-sulfur cluster binding domain CH48_RS03140 PF00012 Hsp70 protein CH48_RS03145 PF07743 HSCB C-terminal oligomerisation domain CH48_RS03145 PF00226 DnaJ domain CH48_RS03150 PF01521 Iron-sulphur cluster biosynthesis CH48_RS03155 PF01592 NifU-like N terminal domain CH48_RS03160 PF00266 Aminotransferase class-V CH48_RS03165 PF02082 Transcriptional regulator CH48_RS03170 PF00588 SpoU rRNA Methylase family CH48_RS03175 PF00459 Inositol monophosphatase family CH48_RS03180 PF03824 High-affinity nickel-transport protein CH48_RS03185 PF06226 Protein of unknown function (DUF1007) CH48_RS03190 PF00874 PRD domain CH48_RS03195 PF12832 MFS_1 like family CH48_RS03200 PF00464 Serine hydroxymethyltransferase CH48_RS03205 PF00175 Oxidoreductase NAD-binding domain CH48_RS03205 PF00042 Globin CH48_RS03205 PF00970 Oxidoreductase FAD-binding domain CH48_RS03210 PF14502 Helix-turn-helix domain CH48_RS03210 PF14503 YhfZ C-terminal domain CH48_RS03215 PF14503 YhfZ C-terminal domain CH48_RS03215 PF14502 Helix-turn-helix domain CH48_RS03225 PF01168 Alanine racemase, N-terminal domain CH48_RS03230 PF02126 Phosphotriesterase family CH48_RS03235 PF10941 Protein of unknown function DUF2620 CH48_RS03240 PF10797 Protein of unknown function CH48_RS03245 PF00543 Nitrogen regulatory protein P-II CH48_RS03250 PF02540 NAD synthase CH48_RS03250 PF00795 Carbon-nitrogen hydrolase CH48_RS03255 PF00158 Sigma-54 interaction domain CH48_RS03255 PF00072 Response regulator receiver domain CH48_RS03260 PF13942 YfhG lipoprotein CH48_RS03265 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS03265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS03275 PF02769 AIR synthase related protein, C-terminal domain CH48_RS03275 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH48_RS03275 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH48_RS03280 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS03280 PF01464 Transglycosylase SLT domain CH48_RS03285 PF14437 MafB19-like deaminase CH48_RS03300 PF01380 SIS domain CH48_RS03305 PF01418 Helix-turn-helix domain, rpiR family CH48_RS03305 PF01380 SIS domain CH48_RS03310 PF12838 4Fe-4S dicluster domain CH48_RS03315 PF02447 GntP family permease CH48_RS03320 PF01648 4'-phosphopantetheinyl transferase superfamily CH48_RS03325 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH48_RS03330 PF11967 Recombination protein O N terminal CH48_RS03330 PF02565 Recombination protein O C terminal CH48_RS03335 PF07650 KH domain CH48_RS03335 PF01926 50S ribosome-binding GTPase CH48_RS03340 PF00035 Double-stranded RNA binding motif CH48_RS03340 PF14622 Ribonuclease-III-like CH48_RS03345 PF10502 Signal peptidase, peptidase S26 CH48_RS03350 PF00679 Elongation factor G C-terminus CH48_RS03350 PF03144 Elongation factor Tu domain 2 CH48_RS03350 PF00009 Elongation factor Tu GTP binding domain CH48_RS03350 PF06421 GTP-binding protein LepA C-terminus CH48_RS03365 PF17188 MucB/RseB C-terminal domain CH48_RS03365 PF03888 MucB/RseB N-terminal domain CH48_RS03370 PF03873 Anti sigma-E protein RseA, C-terminal domain CH48_RS03370 PF03872 Anti sigma-E protein RseA, N-terminal domain CH48_RS03375 PF08281 Sigma-70, region 4 CH48_RS03375 PF04542 Sigma-70 region 2 CH48_RS03380 PF00890 FAD binding domain CH48_RS03380 PF02910 Fumarate reductase flavoprotein C-term CH48_RS03385 PF05175 Methyltransferase small domain CH48_RS03390 PF00270 DEAD/DEAH box helicase CH48_RS03390 PF00271 Helicase conserved C-terminal domain CH48_RS03395 PF01548 Transposase CH48_RS03395 PF02371 Transposase IS116/IS110/IS902 family CH48_RS03405 PF12796 Ankyrin repeats (3 copies) CH48_RS03420 PF01228 Glycine radical CH48_RS03425 PF03167 Uracil DNA glycosylase superfamily CH48_RS03430 PF01025 GrpE CH48_RS03435 PF01513 ATP-NAD kinase CH48_RS03440 PF02463 RecF/RecN/SMC N terminal domain CH48_RS03445 PF04355 SmpA / OmlA family CH48_RS03450 PF03658 RnfH family Ubiquitin CH48_RS03455 PF03364 Polyketide cyclase / dehydrase and lipid transport CH48_RS03460 PF01668 SmpB protein CH48_RS03465 PF00589 Phage integrase family CH48_RS03465 PF13356 Arm DNA-binding domain CH48_RS03485 PF00145 C-5 cytosine-specific DNA methylase CH48_RS03490 PF04917 Bacterial shufflon protein, N-terminal constant region CH48_RS03505 PF17841 BID domain of Bartonella effector protein (Bep) CH48_RS03505 PF03389 MobA/MobL family CH48_RS03505 PF01443 Viral (Superfamily 1) RNA helicase CH48_RS03510 PF01695 IstB-like ATP binding protein CH48_RS03515 PF00665 Integrase core domain CH48_RS03525 PF04794 YdjC-like protein CH48_RS03530 PF12833 Helix-turn-helix domain CH48_RS03530 PF07883 Cupin domain CH48_RS03535 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH48_RS03540 PF00232 Glycosyl hydrolase family 1 CH48_RS03545 PF02378 Phosphotransferase system, EIIC CH48_RS03550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH48_RS03555 PF07995 Glucose / Sorbosone dehydrogenase CH48_RS03570 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH48_RS03575 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH48_RS03580 PF02254 TrkA-N domain CH48_RS03580 PF07885 Ion channel CH48_RS03585 PF06411 HdeA/HdeB family CH48_RS03590 PF03824 High-affinity nickel-transport protein CH48_RS03595 PF03253 Urea transporter CH48_RS03600 PF01774 UreD urease accessory protein CH48_RS03605 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH48_RS03610 PF01730 UreF CH48_RS03615 PF05194 UreE urease accessory protein, C-terminal domain CH48_RS03615 PF02814 UreE urease accessory protein, N-terminal domain CH48_RS03620 PF01979 Amidohydrolase family CH48_RS03620 PF00449 Urease alpha-subunit, N-terminal domain CH48_RS03625 PF00699 Urease beta subunit CH48_RS03630 PF00547 Urease, gamma subunit CH48_RS03635 PF00005 ABC transporter CH48_RS03640 PF00005 ABC transporter CH48_RS03645 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS03645 PF12911 N-terminal TM domain of oligopeptide transport permease C CH48_RS03650 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS03655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_RS03685 PF00313 'Cold-shock' DNA-binding domain CH48_RS03700 PF09400 Protein of unknown function (DUF2002) CH48_RS03705 PF07690 Major Facilitator Superfamily CH48_RS03710 PF12833 Helix-turn-helix domain CH48_RS03720 PF06392 Acid shock protein repeat CH48_RS03730 PF05957 Bacterial protein of unknown function (DUF883) CH48_RS03735 PF00392 Bacterial regulatory proteins, gntR family CH48_RS03735 PF00155 Aminotransferase class I and II CH48_RS03740 PF02627 Carboxymuconolactone decarboxylase family CH48_RS03750 PF07972 NrdI Flavodoxin like CH48_RS03755 PF02867 Ribonucleotide reductase, barrel domain CH48_RS03755 PF00317 Ribonucleotide reductase, all-alpha domain CH48_RS03755 PF08343 Ribonucleotide reductase N-terminal CH48_RS03760 PF00268 Ribonucleotide reductase, small chain CH48_RS03765 PF00571 CBS domain CH48_RS03765 PF00005 ABC transporter CH48_RS03770 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS03775 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH48_RS03785 PF00929 Exonuclease CH48_RS03790 PF00075 RNase H CH48_RS03795 PF08241 Methyltransferase domain CH48_RS03800 PF00753 Metallo-beta-lactamase superfamily CH48_RS03800 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH48_RS03805 PF01464 Transglycosylase SLT domain CH48_RS03805 PF01476 LysM domain CH48_RS03810 PF01548 Transposase CH48_RS03810 PF02371 Transposase IS116/IS110/IS902 family CH48_RS03815 PF03372 Endonuclease/Exonuclease/phosphatase family CH48_RS03820 PF07690 Major Facilitator Superfamily CH48_RS03825 PF03466 LysR substrate binding domain CH48_RS03825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS03830 PF00248 Aldo/keto reductase family CH48_RS03835 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_RS03835 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_RS03875 PF09383 NIL domain CH48_RS03875 PF00005 ABC transporter CH48_RS03880 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS03885 PF03180 NLPA lipoprotein CH48_RS03890 PF16358 RcsF lipoprotein CH48_RS03895 PF01980 tRNA-methyltransferase O CH48_RS03895 PF18389 TrmO C-terminal domain CH48_RS03900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH48_RS03900 PF04073 Aminoacyl-tRNA editing domain CH48_RS03900 PF03129 Anticodon binding domain CH48_RS03905 PF17185 NlpE C-terminal OB domain CH48_RS03905 PF04170 NlpE N-terminal domain CH48_RS03910 PF00472 RF-1 domain CH48_RS03915 PF07152 YaeQ protein CH48_RS03920 PF06786 Uncharacterised protein family (UPF0253) CH48_RS03925 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH48_RS03930 PF00034 Cytochrome c CH48_RS03935 PF11734 TilS substrate C-terminal domain CH48_RS03935 PF01171 PP-loop family CH48_RS03935 PF09179 TilS substrate binding domain CH48_RS03940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH48_RS03945 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH48_RS03945 PF01276 Orn/Lys/Arg decarboxylase, major domain CH48_RS03945 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH48_RS03950 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH48_RS03955 PF02811 PHP domain CH48_RS03955 PF01336 OB-fold nucleic acid binding domain CH48_RS03955 PF14579 Helix-hairpin-helix motif CH48_RS03955 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH48_RS03955 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH48_RS03960 PF01351 Ribonuclease HII CH48_RS03965 PF02684 Lipid-A-disaccharide synthetase CH48_RS03970 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH48_RS03970 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_RS03975 PF07977 FabA-like domain CH48_RS03980 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH48_RS03980 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_RS03985 PF03938 Outer membrane protein (OmpH-like) CH48_RS03990 PF07244 Surface antigen variable number repeat CH48_RS03990 PF01103 Surface antigen CH48_RS03995 PF02163 Peptidase family M50 CH48_RS03995 PF17820 PDZ domain CH48_RS04005 PF01255 Putative undecaprenyl diphosphate synthase CH48_RS04010 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH48_RS04010 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH48_RS04010 PF13288 DXP reductoisomerase C-terminal domain CH48_RS04015 PF01765 Ribosome recycling factor CH48_RS04020 PF00696 Amino acid kinase family CH48_RS04025 PF00889 Elongation factor TS CH48_RS04030 PF00318 Ribosomal protein S2 CH48_RS04035 PF00557 Metallopeptidase family M24 CH48_RS04040 PF01966 HD domain CH48_RS04040 PF08335 GlnD PII-uridylyltransferase CH48_RS04040 PF01842 ACT domain CH48_RS04040 PF01909 Nucleotidyltransferase domain CH48_RS04045 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH48_RS04045 PF14602 Hexapeptide repeat of succinyl-transferase CH48_RS04045 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_RS04050 PF11944 Protein of unknown function (DUF3461) CH48_RS04055 PF00258 Flavodoxin CH48_RS04060 PF00849 RNA pseudouridylate synthase CH48_RS04065 PF04287 tRNA pseudouridine synthase C CH48_RS04070 PF07348 Syd protein (SUKH-2) CH48_RS04075 PF14489 QueF-like protein CH48_RS04075 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH48_RS04080 PF11892 Domain of unknown function (DUF3412) CH48_RS04080 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH48_RS04080 PF03641 Possible lysine decarboxylase CH48_RS04085 PF01367 5'-3' exonuclease, C-terminal SAM fold CH48_RS04085 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH48_RS04095 PF18125 RlmM ferredoxin-like domain CH48_RS04095 PF01728 FtsJ-like methyltransferase CH48_RS04100 PF04241 Protein of unknown function (DUF423) CH48_RS04105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS04105 PF03466 LysR substrate binding domain CH48_RS04110 PF06004 Bacterial protein of unknown function (DUF903) CH48_RS04115 PF00266 Aminotransferase class-V CH48_RS04120 PF02657 Fe-S metabolism associated domain CH48_RS04125 PF00899 ThiF family CH48_RS04130 PF06725 3D domain CH48_RS04130 PF03562 MltA specific insert domain CH48_RS04150 PF11741 AMIN domain CH48_RS04150 PF01520 N-acetylmuramoyl-L-alanine amidase CH48_RS04155 PF00583 Acetyltransferase (GNAT) family CH48_RS04155 PF00696 Amino acid kinase family CH48_RS04165 PF13538 UvrD-like helicase C-terminal domain CH48_RS04170 PF12705 PD-(D/E)XK nuclease superfamily CH48_RS04170 PF00580 UvrD/REP helicase N-terminal domain CH48_RS04170 PF13361 UvrD-like helicase C-terminal domain CH48_RS04175 PF00675 Insulinase (Peptidase family M16) CH48_RS04175 PF05193 Peptidase M16 inactive domain CH48_RS04175 PF16187 Middle or third domain of peptidase_M16 CH48_RS04180 PF17946 RecC C-terminal domain CH48_RS04200 PF07963 Prokaryotic N-terminal methylation motif CH48_RS04205 PF00303 Thymidylate synthase CH48_RS04210 PF01790 Prolipoprotein diacylglyceryl transferase CH48_RS04215 PF01590 GAF domain CH48_RS04215 PF05524 PEP-utilising enzyme, N-terminal CH48_RS04215 PF00391 PEP-utilising enzyme, mobile domain CH48_RS04215 PF02896 PEP-utilising enzyme, TIM barrel domain CH48_RS04220 PF00293 NUDIX domain CH48_RS04230 PF02976 DNA mismatch repair enzyme MutH CH48_RS04235 PF03741 Integral membrane protein TerC family CH48_RS04240 PF00248 Aldo/keto reductase family CH48_RS04245 PF07690 Major Facilitator Superfamily CH48_RS04250 PF01553 Acyltransferase CH48_RS04250 PF00501 AMP-binding enzyme CH48_RS04250 PF13193 AMP-binding enzyme C-terminal domain CH48_RS04260 PF00384 Molybdopterin oxidoreductase CH48_RS04260 PF01568 Molydopterin dinucleotide binding domain CH48_RS04265 PF00356 Bacterial regulatory proteins, lacI family CH48_RS04270 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH48_RS04270 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH48_RS04275 PF03466 LysR substrate binding domain CH48_RS04275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS04280 PF07690 Major Facilitator Superfamily CH48_RS04285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS04285 PF03466 LysR substrate binding domain CH48_RS04320 PF06750 Bacterial Peptidase A24 N-terminal domain CH48_RS04320 PF01478 Type IV leader peptidase family CH48_RS04350 PF07963 Prokaryotic N-terminal methylation motif CH48_RS04350 PF08334 Type II secretion system (T2SS), protein G CH48_RS04355 PF00482 Type II secretion system (T2SS), protein F CH48_RS04360 PF00437 Type II/IV secretion system protein CH48_RS04365 PF00263 Bacterial type II and III secretion system protein CH48_RS04365 PF03958 Bacterial type II/III secretion system short domain CH48_RS04380 PF00484 Carbonic anhydrase CH48_RS04385 PF01638 HxlR-like helix-turn-helix CH48_RS04400 PF00226 DnaJ domain CH48_RS04400 PF01556 DnaJ C terminal domain CH48_RS04410 PF08448 PAS fold CH48_RS04410 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS04415 PF13474 SnoaL-like domain CH48_RS04430 PF00872 Transposase, Mutator family CH48_RS04435 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CH48_RS04440 PF15723 Motility quorum-sensing regulator, toxin of MqsA CH48_RS04455 PF01381 Helix-turn-helix CH48_RS04470 PF02796 Helix-turn-helix domain of resolvase CH48_RS04470 PF00239 Resolvase, N terminal domain CH48_RS04490 PF00665 Integrase core domain CH48_RS04495 PF01695 IstB-like ATP binding protein CH48_RS04510 PF01336 OB-fold nucleic acid binding domain CH48_RS04510 PF00152 tRNA synthetases class II (D, K and N) CH48_RS04515 PF00472 RF-1 domain CH48_RS04515 PF03462 PCRF domain CH48_RS04520 PF01368 DHH family CH48_RS04520 PF02272 DHHA1 domain CH48_RS04520 PF17768 RecJ OB domain CH48_RS04525 PF10411 Disulfide bond isomerase protein N-terminus CH48_RS04525 PF13098 Thioredoxin-like domain CH48_RS04530 PF02899 Phage integrase, N-terminal SAM-like domain CH48_RS04530 PF00589 Phage integrase family CH48_RS04535 PF00258 Flavodoxin CH48_RS04540 PF06123 Inner membrane protein CreD CH48_RS04545 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS04545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS04545 PF00672 HAMP domain CH48_RS04550 PF00486 Transcriptional regulatory protein, C terminal CH48_RS04550 PF00072 Response regulator receiver domain CH48_RS04555 PF07254 Membrane-bound toxin component of toxin-antitoxin system CH48_RS04560 PF03937 Flavinator of succinate dehydrogenase CH48_RS04565 PF01571 Aminomethyltransferase folate-binding domain CH48_RS04575 PF03006 Haemolysin-III related CH48_RS04595 PF02347 Glycine cleavage system P-protein CH48_RS04600 PF01597 Glycine cleavage H-protein CH48_RS04605 PF01571 Aminomethyltransferase folate-binding domain CH48_RS04605 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH48_RS04610 PF01494 FAD binding domain CH48_RS04615 PF01494 FAD binding domain CH48_RS04620 PF00557 Metallopeptidase family M24 CH48_RS04620 PF05195 Aminopeptidase P, N-terminal domain CH48_RS04625 PF03695 Uncharacterised protein family (UPF0149) CH48_RS04630 PF05164 Cell division protein ZapA CH48_RS04635 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH48_RS04640 PF00113 Enolase, C-terminal TIM barrel domain CH48_RS04640 PF03952 Enolase, N-terminal domain CH48_RS04645 PF00117 Glutamine amidotransferase class-I CH48_RS04645 PF06418 CTP synthase N-terminus CH48_RS04650 PF03819 MazG nucleotide pyrophosphohydrolase domain CH48_RS04655 PF02824 TGS domain CH48_RS04655 PF04607 Region found in RelA / SpoT proteins CH48_RS04655 PF13291 ACT domain CH48_RS04660 PF01938 TRAM domain CH48_RS04660 PF05958 tRNA (Uracil-5-)-methyltransferase CH48_RS04665 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH48_RS04665 PF00072 Response regulator receiver domain CH48_RS04665 PF01627 Hpt domain CH48_RS04665 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS04665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS04665 PF00672 HAMP domain CH48_RS04670 PF00595 PDZ domain CH48_RS04675 PF13286 Phosphohydrolase-associated domain CH48_RS04675 PF01966 HD domain CH48_RS04680 PF01048 Phosphorylase superfamily CH48_RS04685 PF01497 Periplasmic binding protein CH48_RS04690 PF03458 UPF0126 domain CH48_RS04695 PF01521 Iron-sulphur cluster biosynthesis CH48_RS04700 PF00654 Voltage gated chloride channel CH48_RS04705 PF00202 Aminotransferase class-III CH48_RS04710 PF07690 Major Facilitator Superfamily CH48_RS04715 PF01032 FecCD transport family CH48_RS04720 PF01497 Periplasmic binding protein CH48_RS04725 PF00005 ABC transporter CH48_RS04730 PF14814 Bifunctional transglycosylase second domain CH48_RS04730 PF00905 Penicillin binding protein transpeptidase domain CH48_RS04730 PF00912 Transglycosylase CH48_RS04730 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH48_RS04735 PF00270 DEAD/DEAH box helicase CH48_RS04735 PF08482 ATP-dependent helicase C-terminal CH48_RS04735 PF04408 Helicase associated domain (HA2) CH48_RS04735 PF00271 Helicase conserved C-terminal domain CH48_RS04740 PF02834 LigT like Phosphoesterase CH48_RS04745 PF03749 Sugar fermentation stimulation protein RE domain CH48_RS04745 PF17746 SfsA N-terminal OB domain CH48_RS04750 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH48_RS04755 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH48_RS04760 PF01743 Poly A polymerase head domain CH48_RS04760 PF12627 Probable RNA and SrmB- binding site of polymerase A CH48_RS04760 PF12626 Polymerase A arginine-rich C-terminus CH48_RS04765 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH48_RS04770 PF02548 Ketopantoate hydroxymethyltransferase CH48_RS04775 PF02569 Pantoate-beta-alanine ligase CH48_RS04780 PF02261 Aspartate decarboxylase CH48_RS04785 PF01522 Polysaccharide deacetylase CH48_RS04790 PF01061 ABC-2 type transporter CH48_RS04795 PF00005 ABC transporter CH48_RS04800 PF00484 Carbonic anhydrase CH48_RS04805 PF00156 Phosphoribosyl transferase domain CH48_RS04810 PF00394 Multicopper oxidase CH48_RS04810 PF07731 Multicopper oxidase CH48_RS04810 PF07732 Multicopper oxidase CH48_RS04810 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH48_RS04815 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH48_RS04820 PF17284 Spermidine synthase tetramerisation domain CH48_RS04825 PF02675 S-adenosylmethionine decarboxylase CH48_RS04830 PF18624 CDI immunity protein CH48_RS04835 PF00892 EamA-like transporter family CH48_RS04840 PF06062 Uncharacterised protein family (UPF0231) CH48_RS04845 PF00330 Aconitase family (aconitate hydratase) CH48_RS04845 PF06434 Aconitate hydratase 2 N-terminus CH48_RS04845 PF11791 Aconitate B N-terminal domain CH48_RS04850 PF07715 TonB-dependent Receptor Plug Domain CH48_RS04850 PF00593 TonB dependent receptor CH48_RS04855 PF12833 Helix-turn-helix domain CH48_RS04855 PF01965 DJ-1/PfpI family CH48_RS04865 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_RS04865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH48_RS04870 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH48_RS04870 PF00364 Biotin-requiring enzyme CH48_RS04870 PF02817 e3 binding domain CH48_RS04875 PF00456 Transketolase, thiamine diphosphate binding domain CH48_RS04875 PF17831 Pyruvate dehydrogenase E1 component middle domain CH48_RS04880 PF07729 FCD domain CH48_RS04880 PF00392 Bacterial regulatory proteins, gntR family CH48_RS04885 PF00324 Amino acid permease CH48_RS04890 PF17113 Regulatory signalling modulator protein AmpE CH48_RS04895 PF01510 N-acetylmuramoyl-L-alanine amidase CH48_RS04900 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH48_RS04900 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH48_RS04905 PF07963 Prokaryotic N-terminal methylation motif CH48_RS04910 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH48_RS04910 PF00437 Type II/IV secretion system protein CH48_RS04915 PF00482 Type II secretion system (T2SS), protein F CH48_RS04920 PF00478 IMP dehydrogenase / GMP reductase domain CH48_RS04925 PF01121 Dephospho-CoA kinase CH48_RS04930 PF07072 Cell division protein CH48_RS04935 PF03884 DNA gyrase inhibitor YacG CH48_RS04940 PF00293 NUDIX domain CH48_RS04945 PF07516 SecA Wing and Scaffold domain CH48_RS04945 PF02810 SEC-C motif CH48_RS04945 PF07517 SecA DEAD-like domain CH48_RS04945 PF01043 SecA preprotein cross-linking domain CH48_RS04950 PF06558 Secretion monitor precursor protein (SecM) CH48_RS04960 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH48_RS04965 PF12327 FtsZ family, C-terminal domain CH48_RS04965 PF00091 Tubulin/FtsZ family, GTPase domain CH48_RS04970 PF02491 SHS2 domain inserted in FTSA CH48_RS04975 PF03799 Cell division protein FtsQ CH48_RS04975 PF08478 POTRA domain, FtsQ-type CH48_RS04980 PF01820 D-ala D-ala ligase N-terminus CH48_RS04980 PF07478 D-ala D-ala ligase C-terminus CH48_RS04985 PF08245 Mur ligase middle domain CH48_RS04985 PF02875 Mur ligase family, glutamate ligase domain CH48_RS04985 PF01225 Mur ligase family, catalytic domain CH48_RS04990 PF04101 Glycosyltransferase family 28 C-terminal domain CH48_RS04990 PF03033 Glycosyltransferase family 28 N-terminal domain CH48_RS04995 PF01098 Cell cycle protein CH48_RS05000 PF02875 Mur ligase family, glutamate ligase domain CH48_RS05000 PF08245 Mur ligase middle domain CH48_RS05005 PF00953 Glycosyl transferase family 4 CH48_RS05005 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH48_RS05010 PF08245 Mur ligase middle domain CH48_RS05010 PF02875 Mur ligase family, glutamate ligase domain CH48_RS05010 PF01225 Mur ligase family, catalytic domain CH48_RS05015 PF08245 Mur ligase middle domain CH48_RS05015 PF02875 Mur ligase family, glutamate ligase domain CH48_RS05015 PF01225 Mur ligase family, catalytic domain CH48_RS05020 PF00905 Penicillin binding protein transpeptidase domain CH48_RS05020 PF03717 Penicillin-binding Protein dimerisation domain CH48_RS05025 PF04999 Cell division protein FtsL CH48_RS05030 PF01795 MraW methylase family CH48_RS05035 PF02381 MraZ protein, putative antitoxin-like CH48_RS05045 PF06610 L-alanine exporter CH48_RS05050 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_RS05050 PF00356 Bacterial regulatory proteins, lacI family CH48_RS05055 PF10369 Small subunit of acetolactate synthase CH48_RS05060 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_RS05060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_RS05060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_RS05065 PF00501 AMP-binding enzyme CH48_RS05070 PF03466 LysR substrate binding domain CH48_RS05070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS05075 PF00682 HMGL-like CH48_RS05075 PF08502 LeuA allosteric (dimerisation) domain CH48_RS05080 PF00180 Isocitrate/isopropylmalate dehydrogenase CH48_RS05085 PF00330 Aconitase family (aconitate hydratase) CH48_RS05090 PF00694 Aconitase C-terminal domain CH48_RS05100 PF01212 Beta-eliminating lyase CH48_RS05105 PF03222 Tryptophan/tyrosine permease family CH48_RS05115 PF07690 Major Facilitator Superfamily CH48_RS05120 PF02901 Pyruvate formate lyase-like CH48_RS05120 PF01228 Glycine radical CH48_RS05125 PF04055 Radical SAM superfamily CH48_RS05130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_RS05130 PF12793 Sugar transport-related sRNA regulator N-term CH48_RS05150 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS05155 PF00005 ABC transporter CH48_RS05160 PF09335 SNARE associated Golgi protein CH48_RS05165 PF03104 DNA polymerase family B, exonuclease domain CH48_RS05165 PF00136 DNA polymerase family B CH48_RS05170 PF18337 RapA N-terminal Tudor like domain CH48_RS05170 PF18339 RapA N-terminal Tudor like domain 1 CH48_RS05170 PF00176 SNF2 family N-terminal domain CH48_RS05170 PF12137 RNA polymerase recycling family C-terminal CH48_RS05170 PF00271 Helicase conserved C-terminal domain CH48_RS05175 PF09134 Invasin, domain 3 CH48_RS05175 PF02369 Bacterial Ig-like domain (group 1) CH48_RS05175 PF11924 Inverse autotransporter, beta-domain CH48_RS05180 PF00849 RNA pseudouridylate synthase CH48_RS05185 PF05099 Tellurite resistance protein TerB CH48_RS05185 PF00226 DnaJ domain CH48_RS05190 PF04453 LPS transport system D CH48_RS05190 PF03968 OstA-like protein CH48_RS05195 PF00639 PPIC-type PPIASE domain CH48_RS05195 PF09312 SurA N-terminal domain CH48_RS05200 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH48_RS05205 PF00398 Ribosomal RNA adenine dimethylase CH48_RS05210 PF04379 ApaG domain CH48_RS05215 PF00149 Calcineurin-like phosphoesterase CH48_RS05220 PF00186 Dihydrofolate reductase CH48_RS05225 PF12821 Threonine/Serine exporter, ThrE CH48_RS05230 PF06738 Putative threonine/serine exporter CH48_RS05235 PF01810 LysE type translocator CH48_RS05240 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH48_RS05240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH48_RS05240 PF02142 MGS-like domain CH48_RS05245 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH48_RS05245 PF00117 Glutamine amidotransferase class-I CH48_RS05250 PF01113 Dihydrodipicolinate reductase, N-terminus CH48_RS05250 PF05173 Dihydrodipicolinate reductase, C-terminus CH48_RS05255 PF02401 LytB protein CH48_RS05260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH48_RS05265 PF01252 Signal peptidase (SPase) II CH48_RS05270 PF00133 tRNA synthetases class I (I, L, M and V) CH48_RS05270 PF08264 Anticodon-binding domain of tRNA CH48_RS05270 PF06827 Zinc finger found in FPG and IleRS CH48_RS05275 PF01687 Riboflavin kinase CH48_RS05275 PF06574 FAD synthetase CH48_RS05285 PF01649 Ribosomal protein S20 CH48_RS05290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS05290 PF03466 LysR substrate binding domain CH48_RS05295 PF06965 Na+/H+ antiporter 1 CH48_RS05300 PF00226 DnaJ domain CH48_RS05300 PF01556 DnaJ C terminal domain CH48_RS05300 PF00684 DnaJ central domain CH48_RS05305 PF00012 Hsp70 protein CH48_RS05310 PF01184 GPR1/FUN34/yaaH family CH48_RS05325 PF07690 Major Facilitator Superfamily CH48_RS05330 PF00994 Probable molybdopterin binding domain CH48_RS05335 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH48_RS05340 PF03883 Peroxide stress protein YaaA CH48_RS05350 PF14821 Threonine synthase N terminus CH48_RS05350 PF00291 Pyridoxal-phosphate dependent enzyme CH48_RS05355 PF00288 GHMP kinases N terminal domain CH48_RS05355 PF08544 GHMP kinases C terminal CH48_RS05360 PF00696 Amino acid kinase family CH48_RS05360 PF03447 Homoserine dehydrogenase, NAD binding domain CH48_RS05360 PF00742 Homoserine dehydrogenase CH48_RS05360 PF13840 ACT domain CH48_RS05360 PF01842 ACT domain CH48_RS05370 PF00486 Transcriptional regulatory protein, C terminal CH48_RS05370 PF00072 Response regulator receiver domain CH48_RS05375 PF05981 CreA protein CH48_RS05380 PF12833 Helix-turn-helix domain CH48_RS05380 PF06445 GyrI-like small molecule binding domain CH48_RS05385 PF00300 Histidine phosphatase superfamily (branch 1) CH48_RS05390 PF01931 Protein of unknown function DUF84 CH48_RS05395 PF01371 Trp repressor protein CH48_RS05400 PF14718 Soluble lytic murein transglycosylase L domain CH48_RS05400 PF01464 Transglycosylase SLT domain CH48_RS05405 PF00689 Cation transporting ATPase, C-terminus CH48_RS05405 PF00690 Cation transporter/ATPase, N-terminus CH48_RS05415 PF17152 Periplasmic sensor domain CH48_RS05415 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS05420 PF00691 OmpA family CH48_RS05425 PF12848 ABC transporter CH48_RS05425 PF00005 ABC transporter CH48_RS05430 PF02661 Fic/DOC family CH48_RS05435 PF03466 LysR substrate binding domain CH48_RS05435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS05440 PF00107 Zinc-binding dehydrogenase CH48_RS05440 PF08240 Alcohol dehydrogenase GroES-like domain CH48_RS05445 PF01381 Helix-turn-helix CH48_RS05445 PF13521 AAA domain CH48_RS05450 PF18073 Rubredoxin metal binding domain CH48_RS05455 PF18429 Domain of unknown function (DUF5609) CH48_RS05460 PF10144 Bacterial virulence factor haemolysin CH48_RS05465 PF01048 Phosphorylase superfamily CH48_RS05470 PF01676 Metalloenzyme superfamily CH48_RS05475 PF02885 Glycosyl transferase family, helical bundle domain CH48_RS05475 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH48_RS05475 PF00591 Glycosyl transferase family, a/b domain CH48_RS05480 PF01791 DeoC/LacD family aldolase CH48_RS05485 PF01773 Na+ dependent nucleoside transporter N-terminus CH48_RS05485 PF07670 Nucleoside recognition CH48_RS05485 PF07662 Na+ dependent nucleoside transporter C-terminus CH48_RS05490 PF01026 TatD related DNase CH48_RS05495 PF01734 Patatin-like phospholipase CH48_RS05500 PF04972 BON domain CH48_RS05505 PF03144 Elongation factor Tu domain 2 CH48_RS05505 PF00009 Elongation factor Tu GTP binding domain CH48_RS05505 PF16658 Class II release factor RF3, C-terminal domain CH48_RS05510 PF00583 Acetyltransferase (GNAT) family CH48_RS05515 PF03603 DNA polymerase III psi subunit CH48_RS05520 PF08468 Methyltransferase small domain N-terminal CH48_RS05520 PF05175 Methyltransferase small domain CH48_RS05525 PF00248 Aldo/keto reductase family CH48_RS05530 PF03466 LysR substrate binding domain CH48_RS05530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS05545 PF07256 Protein of unknown function (DUF1435) CH48_RS05550 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS05555 PF07715 TonB-dependent Receptor Plug Domain CH48_RS05555 PF00593 TonB dependent receptor CH48_RS05555 PF07660 Secretin and TonB N terminus short domain CH48_RS05565 PF00294 pfkB family carbohydrate kinase CH48_RS05570 PF11471 Maltoporin periplasmic N-terminal extension CH48_RS05570 PF02264 LamB porin CH48_RS05575 PF00367 phosphotransferase system, EIIB CH48_RS05575 PF02378 Phosphotransferase system, EIIC CH48_RS05580 PF08244 Glycosyl hydrolases family 32 C terminal CH48_RS05580 PF00251 Glycosyl hydrolases family 32 N-terminal domain CH48_RS05585 PF13407 Periplasmic binding protein domain CH48_RS05585 PF00356 Bacterial regulatory proteins, lacI family CH48_RS05590 PF00158 Sigma-54 interaction domain CH48_RS05590 PF00989 PAS fold CH48_RS05590 PF02954 Bacterial regulatory protein, Fis family CH48_RS05620 PF02543 Carbamoyltransferase N-terminus CH48_RS05620 PF16861 Carbamoyltransferase C-terminus CH48_RS05630 PF00391 PEP-utilising enzyme, mobile domain CH48_RS05630 PF05524 PEP-utilising enzyme, N-terminal CH48_RS05630 PF00381 PTS HPr component phosphorylation site CH48_RS05630 PF03610 PTS system fructose IIA component CH48_RS05635 PF02734 DAK2 domain CH48_RS05640 PF02733 Dak1 domain CH48_RS05645 PF00465 Iron-containing alcohol dehydrogenase CH48_RS05650 PF00873 AcrB/AcrD/AcrF family CH48_RS05655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_RS05665 PF13520 Amino acid permease CH48_RS05675 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH48_RS05680 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH48_RS05680 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH48_RS05685 PF00325 Bacterial regulatory proteins, crp family CH48_RS05685 PF04198 Putative sugar-binding domain CH48_RS05690 PF00005 ABC transporter CH48_RS05695 PF02653 Branched-chain amino acid transport system / permease component CH48_RS05700 PF02653 Branched-chain amino acid transport system / permease component CH48_RS05705 PF13407 Periplasmic binding protein domain CH48_RS05710 PF01791 DeoC/LacD family aldolase CH48_RS05715 PF03992 Antibiotic biosynthesis monooxygenase CH48_RS05725 PF10696 Protein of unknown function (DUF2501) CH48_RS05730 PF00872 Transposase, Mutator family CH48_RS05765 PF00583 Acetyltransferase (GNAT) family CH48_RS05770 PF13091 PLD-like domain CH48_RS05770 PF13087 AAA domain CH48_RS05775 PF00665 Integrase core domain CH48_RS05780 PF01695 IstB-like ATP binding protein CH48_RS05785 PF13333 Integrase core domain CH48_RS05785 PF13276 HTH-like domain CH48_RS05785 PF00665 Integrase core domain CH48_RS05820 PF03739 Lipopolysaccharide export system permease LptF/LptG CH48_RS05825 PF03739 Lipopolysaccharide export system permease LptF/LptG CH48_RS05830 PF00883 Cytosol aminopeptidase family, catalytic domain CH48_RS05830 PF02789 Cytosol aminopeptidase family, N-terminal domain CH48_RS05835 PF04364 DNA polymerase III chi subunit, HolC CH48_RS05840 PF08264 Anticodon-binding domain of tRNA CH48_RS05840 PF10458 Valyl tRNA synthetase tRNA binding arm CH48_RS05840 PF00133 tRNA synthetases class I (I, L, M and V) CH48_RS05845 PF00583 Acetyltransferase (GNAT) family CH48_RS05855 PF06877 Regulator of ribonuclease activity B CH48_RS05860 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH48_RS05860 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH48_RS05865 PF04074 YhcH/YjgK/YiaL CH48_RS05875 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS05880 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS05880 PF12911 N-terminal TM domain of oligopeptide transport permease C CH48_RS05885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_RS05885 PF00005 ABC transporter CH48_RS05890 PF00005 ABC transporter CH48_RS05890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_RS05900 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH48_RS05900 PF03477 ATP cone domain CH48_RS05920 PF00392 Bacterial regulatory proteins, gntR family CH48_RS05920 PF07702 UTRA domain CH48_RS05925 PF06754 Phosphonate metabolism protein PhnG CH48_RS05930 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH48_RS05935 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH48_RS05940 PF06007 Phosphonate metabolism protein PhnJ CH48_RS05945 PF00005 ABC transporter CH48_RS05950 PF00005 ABC transporter CH48_RS05955 PF07969 Amidohydrolase family CH48_RS05965 PF12706 Beta-lactamase superfamily domain CH48_RS05970 PF13460 NAD(P)H-binding CH48_RS05975 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CH48_RS05995 PF00005 ABC transporter CH48_RS05995 PF03459 TOBE domain CH48_RS05995 PF17912 MalK OB fold domain CH48_RS06000 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS06005 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS06010 PF13416 Bacterial extracellular solute-binding protein CH48_RS06020 PF05426 Alginate lyase CH48_RS06020 PF07940 Heparinase II/III-like protein CH48_RS06025 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH48_RS06025 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH48_RS06025 PF01276 Orn/Lys/Arg decarboxylase, major domain CH48_RS06030 PF13520 Amino acid permease CH48_RS06035 PF01541 GIY-YIG catalytic domain CH48_RS06040 PF13508 Acetyltransferase (GNAT) domain CH48_RS06045 PF02036 SCP-2 sterol transfer family CH48_RS06050 PF01136 Peptidase family U32 CH48_RS06055 PF01136 Peptidase family U32 CH48_RS06060 PF03313 Serine dehydratase alpha chain CH48_RS06070 PF02321 Outer membrane efflux protein CH48_RS06070 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH48_RS06075 PF00296 Luciferase-like monooxygenase CH48_RS06085 PF00271 Helicase conserved C-terminal domain CH48_RS06085 PF12343 Cold shock protein DEAD box A CH48_RS06085 PF03880 DbpA RNA binding domain CH48_RS06085 PF00270 DEAD/DEAH box helicase CH48_RS06090 PF13181 Tetratricopeptide repeat CH48_RS06090 PF07719 Tetratricopeptide repeat CH48_RS06095 PF00013 KH domain CH48_RS06095 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH48_RS06095 PF01138 3' exoribonuclease family, domain 1 CH48_RS06095 PF03725 3' exoribonuclease family, domain 2 CH48_RS06095 PF00575 S1 RNA binding domain CH48_RS06100 PF00312 Ribosomal protein S15 CH48_RS06105 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH48_RS06105 PF09157 Pseudouridine synthase II TruB, C-terminal CH48_RS06105 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH48_RS06110 PF02033 Ribosome-binding factor A CH48_RS06115 PF04760 Translation initiation factor IF-2, N-terminal region CH48_RS06115 PF08364 Bacterial translation initiation factor IF-2 associated region CH48_RS06115 PF11987 Translation-initiation factor 2 CH48_RS06115 PF03144 Elongation factor Tu domain 2 CH48_RS06115 PF00009 Elongation factor Tu GTP binding domain CH48_RS06120 PF08529 NusA N-terminal domain CH48_RS06120 PF00575 S1 RNA binding domain CH48_RS06120 PF13184 NusA-like KH domain CH48_RS06125 PF02576 RimP N-terminal domain CH48_RS06125 PF17384 RimP C-terminal SH3 domain CH48_RS06140 PF03840 Preprotein translocase SecG subunit CH48_RS06145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH48_RS06145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH48_RS06145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH48_RS06145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH48_RS06150 PF00809 Pterin binding enzyme CH48_RS06155 PF17862 AAA+ lid domain CH48_RS06155 PF00004 ATPase family associated with various cellular activities (AAA) CH48_RS06155 PF01434 Peptidase family M41 CH48_RS06155 PF06480 FtsH Extracellular CH48_RS06160 PF01728 FtsJ-like methyltransferase CH48_RS06165 PF01985 CRS1 / YhbY (CRM) domain CH48_RS06170 PF01272 Transcription elongation factor, GreA/GreB, C-term CH48_RS06170 PF03449 Transcription elongation factor, N-terminal CH48_RS06175 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH48_RS06180 PF00486 Transcriptional regulatory protein, C terminal CH48_RS06180 PF00072 Response regulator receiver domain CH48_RS06185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS06185 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS06185 PF00672 HAMP domain CH48_RS06190 PF01926 50S ribosome-binding GTPase CH48_RS06190 PF01018 GTP1/OBG CH48_RS06195 PF00892 EamA-like transporter family CH48_RS06200 PF01016 Ribosomal L27 protein CH48_RS06205 PF00829 Ribosomal prokaryotic L21 protein CH48_RS06210 PF00348 Polyprenyl synthetase CH48_RS06220 PF13693 Winged helix-turn-helix DNA-binding CH48_RS06225 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH48_RS06225 PF00056 lactate/malate dehydrogenase, NAD binding domain CH48_RS06230 PF01316 Arginine repressor, DNA binding domain CH48_RS06230 PF02863 Arginine repressor, C-terminal domain CH48_RS06240 PF02875 Mur ligase family, glutamate ligase domain CH48_RS06240 PF08245 Mur ligase middle domain CH48_RS06240 PF01225 Mur ligase family, catalytic domain CH48_RS06250 PF01225 Mur ligase family, catalytic domain CH48_RS06250 PF02875 Mur ligase family, glutamate ligase domain CH48_RS06250 PF08245 Mur ligase middle domain CH48_RS06255 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH48_RS06260 PF00672 HAMP domain CH48_RS06260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_RS06260 PF02203 Tar ligand binding domain homologue CH48_RS06265 PF00719 Inorganic pyrophosphatase CH48_RS06275 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH48_RS06280 PF04357 TamB, inner membrane protein subunit of TAM complex CH48_RS06285 PF01103 Surface antigen CH48_RS06285 PF07244 Surface antigen variable number repeat CH48_RS06285 PF17243 POTRA domain TamA domain 1 CH48_RS06290 PF01625 Peptide methionine sulfoxide reductase CH48_RS06295 PF01595 Cyclin M transmembrane N-terminal domain CH48_RS06295 PF03471 Transporter associated domain CH48_RS06295 PF00571 CBS domain CH48_RS06300 PF06526 Protein of unknown function (DUF1107) CH48_RS06305 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH48_RS06310 PF00459 Inositol monophosphatase family CH48_RS06315 PF00149 Calcineurin-like phosphoesterase CH48_RS06315 PF02872 5'-nucleotidase, C-terminal domain CH48_RS06320 PF04405 Domain of Unknown function (DUF542) CH48_RS06320 PF01814 Hemerythrin HHE cation binding domain CH48_RS06325 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH48_RS06325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH48_RS06330 PF04225 Opacity-associated protein A LysM-like domain CH48_RS06330 PF08525 Opacity-associated protein A N-terminal motif CH48_RS06340 PF01281 Ribosomal protein L9, N-terminal domain CH48_RS06340 PF03948 Ribosomal protein L9, C-terminal domain CH48_RS06345 PF01084 Ribosomal protein S18 CH48_RS06350 PF00436 Single-strand binding protein family CH48_RS06355 PF01250 Ribosomal protein S6 CH48_RS06365 PF00326 Prolyl oligopeptidase family CH48_RS06370 PF07338 Protein of unknown function (DUF1471) CH48_RS06375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH48_RS06375 PF02770 Acyl-CoA dehydrogenase, middle domain CH48_RS06375 PF18158 Adaptive response protein AidB N-terminal domain CH48_RS06380 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH48_RS06380 PF00588 SpoU rRNA Methylase family CH48_RS06385 PF08461 Ribonuclease R winged-helix domain CH48_RS06385 PF00773 RNB domain CH48_RS06385 PF00575 S1 RNA binding domain CH48_RS06385 PF08206 Ribonuclease B OB domain CH48_RS06385 PF17876 Cold shock domain CH48_RS06390 PF02082 Transcriptional regulator CH48_RS06395 PF00709 Adenylosuccinate synthetase CH48_RS06400 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH48_RS06405 PF01145 SPFH domain / Band 7 family CH48_RS06410 PF01145 SPFH domain / Band 7 family CH48_RS06410 PF12221 Bacterial membrane protein N terminal CH48_RS06415 PF16360 GTP-binding GTPase Middle Region CH48_RS06415 PF01926 50S ribosome-binding GTPase CH48_RS06415 PF13167 GTP-binding GTPase N-terminal CH48_RS06420 PF17209 Hfq protein CH48_RS06430 PF08676 MutL C terminal dimerisation domain CH48_RS06430 PF01119 DNA mismatch repair protein, C-terminal domain CH48_RS06435 PF01520 N-acetylmuramoyl-L-alanine amidase CH48_RS06440 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH48_RS06445 PF01256 Carbohydrate kinase CH48_RS06445 PF03853 YjeF-related protein N-terminus CH48_RS06450 PF08331 Domain of unknown function (DUF1730) CH48_RS06465 PF00929 Exonuclease CH48_RS06470 PF03193 RsgA GTPase CH48_RS06475 PF02666 Phosphatidylserine decarboxylase CH48_RS06480 PF00924 Mechanosensitive ion channel CH48_RS06480 PF12795 Mechanosensitive ion channel porin domain CH48_RS06480 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH48_RS06485 PF00152 tRNA synthetases class II (D, K and N) CH48_RS06490 PF02910 Fumarate reductase flavoprotein C-term CH48_RS06490 PF00890 FAD binding domain CH48_RS06495 PF13085 2Fe-2S iron-sulfur cluster binding domain CH48_RS06495 PF13183 4Fe-4S dicluster domain CH48_RS06500 PF02300 Fumarate reductase subunit C CH48_RS06505 PF02313 Fumarate reductase subunit D CH48_RS06510 PF08212 Lipocalin-like domain CH48_RS06515 PF00893 Small Multidrug Resistance protein CH48_RS06520 PF08085 Entericidin EcnA/B family CH48_RS06525 PF08207 Elongation factor P (EF-P) KOW-like domain CH48_RS06525 PF09285 Elongation factor P, C-terminal CH48_RS06525 PF01132 Elongation factor P (EF-P) OB domain CH48_RS06530 PF04055 Radical SAM superfamily CH48_RS06535 PF13698 Domain of unknown function (DUF4156) CH48_RS06545 PF00118 TCP-1/cpn60 chaperonin family CH48_RS06550 PF00166 Chaperonin 10 Kd subunit CH48_RS06555 PF04186 FxsA cytoplasmic membrane protein CH48_RS06560 PF10415 Fumarase C C-terminus CH48_RS06560 PF00206 Lyase CH48_RS06565 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH48_RS06570 PF03091 CutA1 divalent ion tolerance protein CH48_RS06575 PF02683 Cytochrome C biogenesis protein transmembrane region CH48_RS06575 PF11412 Disulphide bond corrector protein DsbC CH48_RS06580 PF02595 Glycerate kinase family CH48_RS06595 PF01228 Glycine radical CH48_RS06595 PF02901 Pyruvate formate lyase-like CH48_RS06600 PF00871 Acetokinase family CH48_RS06605 PF01490 Transmembrane amino acid transporter protein CH48_RS06610 PF00291 Pyridoxal-phosphate dependent enzyme CH48_RS06615 PF04055 Radical SAM superfamily CH48_RS06620 PF06228 Haem utilisation ChuX/HutX CH48_RS06630 PF10636 Hemin uptake protein hemP CH48_RS06635 PF07715 TonB-dependent Receptor Plug Domain CH48_RS06635 PF00593 TonB dependent receptor CH48_RS06640 PF05171 Haemin-degrading HemS.ChuX domain CH48_RS06645 PF01497 Periplasmic binding protein CH48_RS06650 PF01032 FecCD transport family CH48_RS06655 PF00005 ABC transporter CH48_RS06660 PF00392 Bacterial regulatory proteins, gntR family CH48_RS06660 PF00155 Aminotransferase class I and II CH48_RS06665 PF00593 TonB dependent receptor CH48_RS06665 PF07715 TonB-dependent Receptor Plug Domain CH48_RS06670 PF00924 Mechanosensitive ion channel CH48_RS06670 PF12795 Mechanosensitive ion channel porin domain CH48_RS06670 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH48_RS06675 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CH48_RS06680 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CH48_RS06685 PF05193 Peptidase M16 inactive domain CH48_RS06685 PF00675 Insulinase (Peptidase family M16) CH48_RS06690 PF06472 ABC transporter transmembrane region 2 CH48_RS06690 PF00005 ABC transporter CH48_RS06695 PF07715 TonB-dependent Receptor Plug Domain CH48_RS06700 PF04773 FecR protein CH48_RS06700 PF16220 Domain of unknown function (DUF4880) CH48_RS06715 PF01206 Sulfurtransferase TusA CH48_RS06720 PF04143 Sulphur transport CH48_RS06725 PF01312 FlhB HrpN YscU SpaS Family CH48_RS06730 PF01311 Bacterial export proteins, family 1 CH48_RS06735 PF01313 Bacterial export proteins, family 3 CH48_RS06740 PF00813 FliP family CH48_RS06745 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH48_RS06760 PF18269 T3SS EscN ATPase C-terminal domain CH48_RS06760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_RS06765 PF00771 FHIPEP family CH48_RS06775 PF07201 HrpJ-like domain CH48_RS06790 PF01514 Secretory protein of YscJ/FliF family CH48_RS06810 PF14525 AraC-binding-like domain CH48_RS06810 PF12833 Helix-turn-helix domain CH48_RS06835 PF04888 Secretion system effector C (SseC) like family CH48_RS06865 PF03958 Bacterial type II/III secretion system short domain CH48_RS06865 PF00263 Bacterial type II and III secretion system protein CH48_RS06875 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH48_RS06875 PF00072 Response regulator receiver domain CH48_RS06875 PF01627 Hpt domain CH48_RS06875 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS06875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS06875 PF00672 HAMP domain CH48_RS06880 PF00196 Bacterial regulatory proteins, luxR family CH48_RS06880 PF00072 Response regulator receiver domain CH48_RS06885 PF00375 Sodium:dicarboxylate symporter family CH48_RS06890 PF13193 AMP-binding enzyme C-terminal domain CH48_RS06890 PF00501 AMP-binding enzyme CH48_RS06890 PF16177 Acetyl-coenzyme A synthetase N-terminus CH48_RS06895 PF04341 Protein of unknown function, DUF485 CH48_RS06900 PF00474 Sodium:solute symporter family CH48_RS06940 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_RS06945 PF08501 Shikimate dehydrogenase substrate binding domain CH48_RS06945 PF01488 Shikimate / quinate 5-dehydrogenase CH48_RS06945 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH48_RS06950 PF01300 Telomere recombination CH48_RS06955 PF01396 Topoisomerase DNA binding C4 zinc finger CH48_RS06960 PF04361 Protein of unknown function (DUF494) CH48_RS06965 PF02481 DNA recombination-mediator protein A CH48_RS06965 PF17782 DprA winged helix domain CH48_RS06970 PF01327 Polypeptide deformylase CH48_RS06975 PF02911 Formyl transferase, C-terminal domain CH48_RS06975 PF00551 Formyl transferase CH48_RS06980 PF01029 NusB family CH48_RS06980 PF01189 16S rRNA methyltransferase RsmB/F CH48_RS06985 PF02080 TrkA-C domain CH48_RS06985 PF02254 TrkA-N domain CH48_RS06990 PF01741 Large-conductance mechanosensitive channel, MscL CH48_RS07000 PF03889 Alternative ribosome-rescue factor A CH48_RS07005 PF13411 MerR HTH family regulatory protein CH48_RS07010 PF09350 Domain of unknown function (DUF1992) CH48_RS07015 PF01196 Ribosomal protein L17 CH48_RS07020 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH48_RS07020 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH48_RS07020 PF01000 RNA polymerase Rpb3/RpoA insert domain CH48_RS07025 PF00163 Ribosomal protein S4/S9 N-terminal domain CH48_RS07025 PF01479 S4 domain CH48_RS07030 PF00411 Ribosomal protein S11 CH48_RS07035 PF00416 Ribosomal protein S13/S18 CH48_RS07040 PF00444 Ribosomal protein L36 CH48_RS07045 PF00344 SecY translocase CH48_RS07050 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH48_RS07055 PF00327 Ribosomal protein L30p/L7e CH48_RS07060 PF00333 Ribosomal protein S5, N-terminal domain CH48_RS07060 PF03719 Ribosomal protein S5, C-terminal domain CH48_RS07065 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH48_RS07070 PF00347 Ribosomal protein L6 CH48_RS07075 PF00410 Ribosomal protein S8 CH48_RS07080 PF00253 Ribosomal protein S14p/S29e CH48_RS07085 PF00281 Ribosomal protein L5 CH48_RS07085 PF00673 ribosomal L5P family C-terminus CH48_RS07090 PF00467 KOW motif CH48_RS07090 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH48_RS07095 PF00238 Ribosomal protein L14p/L23e CH48_RS07100 PF00366 Ribosomal protein S17 CH48_RS07105 PF00831 Ribosomal L29 protein CH48_RS07110 PF00252 Ribosomal protein L16p/L10e CH48_RS07115 PF07650 KH domain CH48_RS07115 PF00189 Ribosomal protein S3, C-terminal domain CH48_RS07120 PF00237 Ribosomal protein L22p/L17e CH48_RS07125 PF00203 Ribosomal protein S19 CH48_RS07130 PF00181 Ribosomal Proteins L2, RNA binding domain CH48_RS07130 PF03947 Ribosomal Proteins L2, C-terminal domain CH48_RS07135 PF00276 Ribosomal protein L23 CH48_RS07140 PF00573 Ribosomal protein L4/L1 family CH48_RS07145 PF00297 Ribosomal protein L3 CH48_RS07150 PF00338 Ribosomal protein S10p/S20e CH48_RS07155 PF00210 Ferritin-like domain CH48_RS07160 PF04324 BFD-like [2Fe-2S] binding domain CH48_RS07165 PF03144 Elongation factor Tu domain 2 CH48_RS07165 PF00009 Elongation factor Tu GTP binding domain CH48_RS07165 PF03143 Elongation factor Tu C-terminal domain CH48_RS07170 PF03764 Elongation factor G, domain IV CH48_RS07170 PF00009 Elongation factor Tu GTP binding domain CH48_RS07170 PF14492 Elongation Factor G, domain II CH48_RS07170 PF00679 Elongation factor G C-terminus CH48_RS07170 PF03144 Elongation factor Tu domain 2 CH48_RS07175 PF00177 Ribosomal protein S7p/S5e CH48_RS07180 PF00164 Ribosomal protein S12/S23 CH48_RS07185 PF04077 DsrH like protein CH48_RS07190 PF02635 DsrE/DsrF-like family CH48_RS07195 PF02635 DsrE/DsrF-like family CH48_RS07200 PF13309 HTH domain CH48_RS07200 PF08348 YheO-like PAS domain CH48_RS07205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH48_RS07205 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH48_RS07210 PF04102 SlyX CH48_RS07215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH48_RS07220 PF09526 Probable metal-binding protein (DUF2387) CH48_RS07225 PF02254 TrkA-N domain CH48_RS07225 PF00999 Sodium/hydrogen exchanger family CH48_RS07230 PF02525 Flavodoxin-like fold CH48_RS07235 PF00005 ABC transporter CH48_RS07235 PF12848 ABC transporter CH48_RS07240 PF00535 Glycosyl transferase family 2 CH48_RS07250 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH48_RS07255 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS07260 PF00005 ABC transporter CH48_RS07265 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH48_RS07270 PF02567 Phenazine biosynthesis-like protein CH48_RS07275 PF01810 LysE type translocator CH48_RS07280 PF00561 alpha/beta hydrolase fold CH48_RS07285 PF06794 Uncharacterised protein family (UPF0270) CH48_RS07290 PF00485 Phosphoribulokinase / Uridine kinase family CH48_RS07295 PF02566 OsmC-like protein CH48_RS07300 PF13545 Crp-like helix-turn-helix domain CH48_RS07300 PF00027 Cyclic nucleotide-binding domain CH48_RS07305 PF12805 FUSC-like inner membrane protein yccS CH48_RS07310 PF00202 Aminotransferase class-III CH48_RS07315 PF00117 Glutamine amidotransferase class-I CH48_RS07320 PF05872 Bacterial protein of unknown function (DUF853) CH48_RS07325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH48_RS07330 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH48_RS07330 PF02056 Family 4 glycosyl hydrolase CH48_RS07335 PF00356 Bacterial regulatory proteins, lacI family CH48_RS07340 PF07690 Major Facilitator Superfamily CH48_RS07345 PF07969 Amidohydrolase family CH48_RS07350 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH48_RS07350 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_RS07350 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH48_RS07350 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH48_RS07350 PF04324 BFD-like [2Fe-2S] binding domain CH48_RS07355 PF13806 Rieske-like [2Fe-2S] domain CH48_RS07360 PF01226 Formate/nitrite transporter CH48_RS07365 PF14824 Sirohaem biosynthesis protein central CH48_RS07365 PF10414 Sirohaem synthase dimerisation region CH48_RS07365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_RS07370 PF00579 tRNA synthetases class I (W and Y) CH48_RS07375 PF13419 Haloacid dehalogenase-like hydrolase CH48_RS07380 PF00834 Ribulose-phosphate 3 epimerase family CH48_RS07385 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH48_RS07390 PF05036 Sporulation related domain CH48_RS07395 PF01761 3-dehydroquinate synthase CH48_RS07400 PF01202 Shikimate kinase CH48_RS07405 PF00263 Bacterial type II and III secretion system protein CH48_RS07405 PF03958 Bacterial type II/III secretion system short domain CH48_RS07430 PF00905 Penicillin binding protein transpeptidase domain CH48_RS07430 PF17092 Penicillin-binding protein OB-like domain CH48_RS07430 PF00912 Transglycosylase CH48_RS07435 PF00293 NUDIX domain CH48_RS07440 PF07095 Intracellular growth attenuator protein IgaA CH48_RS07445 PF13419 Haloacid dehalogenase-like hydrolase CH48_RS07450 PF01479 S4 domain CH48_RS07455 PF01430 Hsp33 protein CH48_RS07460 PF01293 Phosphoenolpyruvate carboxykinase CH48_RS07470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS07470 PF00672 HAMP domain CH48_RS07470 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS07475 PF00072 Response regulator receiver domain CH48_RS07475 PF00486 Transcriptional regulatory protein, C terminal CH48_RS07480 PF03449 Transcription elongation factor, N-terminal CH48_RS07480 PF01272 Transcription elongation factor, GreA/GreB, C-term CH48_RS07505 PF16921 Tex protein YqgF-like domain CH48_RS07505 PF09371 Tex-like protein N-terminal domain CH48_RS07505 PF17674 HHH domain CH48_RS07505 PF00575 S1 RNA binding domain CH48_RS07510 PF04023 FeoA domain CH48_RS07515 PF02421 Ferrous iron transport protein B CH48_RS07515 PF17910 FeoB cytosolic helical domain CH48_RS07515 PF07664 Ferrous iron transport protein B C terminus CH48_RS07515 PF07670 Nucleoside recognition CH48_RS07520 PF09012 FeoC like transcriptional regulator CH48_RS07525 PF07338 Protein of unknown function (DUF1471) CH48_RS07530 PF00561 alpha/beta hydrolase fold CH48_RS07535 PF00156 Phosphoribosyl transferase domain CH48_RS07540 PF01521 Iron-sulphur cluster biosynthesis CH48_RS07540 PF01106 NifU-like domain CH48_RS07550 PF02446 4-alpha-glucanotransferase CH48_RS07555 PF00343 Carbohydrate phosphorylase CH48_RS07565 PF00343 Carbohydrate phosphorylase CH48_RS07570 PF17874 MalT-like TPR region CH48_RS07570 PF00196 Bacterial regulatory proteins, luxR family CH48_RS07580 PF00581 Rhodanese-like domain CH48_RS07585 PF01694 Rhomboid family CH48_RS07585 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH48_RS07590 PF08220 DeoR-like helix-turn-helix domain CH48_RS07590 PF00455 DeoR C terminal sensor domain CH48_RS07600 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH48_RS07600 PF01266 FAD dependent oxidoreductase CH48_RS07605 PF00343 Carbohydrate phosphorylase CH48_RS07610 PF00534 Glycosyl transferases group 1 CH48_RS07610 PF08323 Starch synthase catalytic domain CH48_RS07615 PF00483 Nucleotidyl transferase CH48_RS07620 PF18390 Glycogen debranching enzyme C-terminal domain CH48_RS07620 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH48_RS07620 PF00128 Alpha amylase, catalytic domain CH48_RS07625 PF02806 Alpha amylase, C-terminal all-beta domain CH48_RS07625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH48_RS07625 PF00128 Alpha amylase, catalytic domain CH48_RS07630 PF07694 5TMR of 5TMR-LYT CH48_RS07630 PF06580 Histidine kinase CH48_RS07635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS07635 PF03466 LysR substrate binding domain CH48_RS07640 PF03306 Alpha-acetolactate decarboxylase CH48_RS07645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_RS07645 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_RS07645 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_RS07650 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH48_RS07650 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH48_RS07655 PF01914 MarC family integral membrane protein CH48_RS07660 PF01202 Shikimate kinase CH48_RS07665 PF02447 GntP family permease CH48_RS07670 PF00356 Bacterial regulatory proteins, lacI family CH48_RS07670 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_RS07675 PF02678 Pirin CH48_RS07675 PF17954 Quercetinase C-terminal cupin domain CH48_RS07680 PF00583 Acetyltransferase (GNAT) family CH48_RS07685 PF01261 Xylose isomerase-like TIM barrel CH48_RS07690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH48_RS07690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH48_RS07695 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_RS07695 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_RS07695 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_RS07700 PF00294 pfkB family carbohydrate kinase CH48_RS07710 PF04962 KduI/IolB family CH48_RS07715 PF00171 Aldehyde dehydrogenase family CH48_RS07720 PF07690 Major Facilitator Superfamily CH48_RS07725 PF03466 LysR substrate binding domain CH48_RS07725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS07740 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH48_RS07745 PF05681 Fumarate hydratase (Fumerase) CH48_RS07745 PF05683 Fumarase C-terminus CH48_RS07750 PF03466 LysR substrate binding domain CH48_RS07750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS07755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_RS07755 PF10414 Sirohaem synthase dimerisation region CH48_RS07755 PF14824 Sirohaem biosynthesis protein central CH48_RS07760 PF00288 GHMP kinases N terminal domain CH48_RS07765 PF02310 B12 binding domain CH48_RS07770 PF13941 MutL protein CH48_RS07775 PF06368 Methylaspartate mutase E chain (MutE) CH48_RS07780 PF05034 Methylaspartate ammonia-lyase N-terminus CH48_RS07780 PF07476 Methylaspartate ammonia-lyase C-terminus CH48_RS07795 PF00375 Sodium:dicarboxylate symporter family CH48_RS07805 PF01384 Phosphate transporter family CH48_RS07810 PF10625 Universal stress protein B (UspB) CH48_RS07815 PF00582 Universal stress protein family CH48_RS07820 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH48_RS07820 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH48_RS07825 PF08548 Peptidase M10 serralysin C terminal CH48_RS07825 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH48_RS07825 PF00413 Matrixin CH48_RS07830 PF04445 Putative SAM-dependent methyltransferase CH48_RS07835 PF01432 Peptidase family M3 CH48_RS07840 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH48_RS07845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH48_RS07845 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_RS07850 PF03797 Autotransporter beta-domain CH48_RS07855 PF03631 Virulence factor BrkB CH48_RS07860 PF02611 CDP-diacylglycerol pyrophosphatase CH48_RS07865 PF05170 AsmA family CH48_RS07870 PF00563 EAL domain CH48_RS07875 PF01361 Tautomerase enzyme CH48_RS07880 PF00294 pfkB family carbohydrate kinase CH48_RS07885 PF05193 Peptidase M16 inactive domain CH48_RS07885 PF00675 Insulinase (Peptidase family M16) CH48_RS07890 PF00375 Sodium:dicarboxylate symporter family CH48_RS07900 PF06917 Periplasmic pectate lyase CH48_RS07905 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH48_RS07910 PF17154 Gammaproteobacterial periplasmic sensor domain CH48_RS07910 PF00563 EAL domain CH48_RS07910 PF00672 HAMP domain CH48_RS07910 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS07925 PF01270 Glycosyl hydrolases family 8 CH48_RS07930 PF03170 Bacterial cellulose synthase subunit CH48_RS07935 PF07238 PilZ domain CH48_RS07935 PF03552 Cellulose synthase CH48_RS07935 PF00535 Glycosyl transferase family 2 CH48_RS07940 PF06564 Cellulose biosynthesis protein BcsQ CH48_RS07950 PF10995 Cellulose biosynthesis GIL CH48_RS07955 PF11120 Cellulose biosynthesis protein BcsF CH48_RS07960 PF11658 Cellulose biosynthesis protein BcsG CH48_RS07965 PF00005 ABC transporter CH48_RS07965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_RS07970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_RS07970 PF00005 ABC transporter CH48_RS07975 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS07975 PF12911 N-terminal TM domain of oligopeptide transport permease C CH48_RS07980 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS07985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_RS07995 PF02566 OsmC-like protein CH48_RS08000 PF08019 Phosphoethanolamine transferase EptA/EptB CH48_RS08000 PF00884 Sulfatase CH48_RS08005 PF00196 Bacterial regulatory proteins, luxR family CH48_RS08005 PF00072 Response regulator receiver domain CH48_RS08010 PF05231 MASE1 CH48_RS08010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS08010 PF07730 Histidine kinase CH48_RS08015 PF07690 Major Facilitator Superfamily CH48_RS08030 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH48_RS08030 PF08479 POTRA domain, ShlB-type CH48_RS08030 PF17287 POTRA domain CH48_RS08035 PF04829 Pre-toxin domain with VENN motif CH48_RS08035 PF13332 Hemagglutinin repeat CH48_RS08035 PF13018 Extended Signal Peptide of Type V secretion system CH48_RS08035 PF05860 haemagglutination activity domain CH48_RS08040 PF12146 Serine aminopeptidase, S33 CH48_RS08045 PF00872 Transposase, Mutator family CH48_RS08050 PF06755 CbtA_toxin of type IV toxin-antitoxin system CH48_RS08070 PF00356 Bacterial regulatory proteins, lacI family CH48_RS08075 PF00480 ROK family CH48_RS08080 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH48_RS08085 PF02378 Phosphotransferase system, EIIC CH48_RS08090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH48_RS08095 PF02378 Phosphotransferase system, EIIC CH48_RS08110 PF00232 Glycosyl hydrolase family 1 CH48_RS08115 PF01238 Phosphomannose isomerase type I CH48_RS08120 PF13954 PapC N-terminal domain CH48_RS08120 PF00577 Outer membrane usher protein CH48_RS08120 PF13953 PapC C-terminal domain CH48_RS08130 PF01175 Urocanase Rossmann-like domain CH48_RS08130 PF17392 Urocanase C-terminal domain CH48_RS08130 PF17391 Urocanase N-terminal domain CH48_RS08135 PF00221 Aromatic amino acid lyase CH48_RS08140 PF00324 Amino acid permease CH48_RS08145 PF01695 IstB-like ATP binding protein CH48_RS08170 PF00589 Phage integrase family CH48_RS08170 PF14659 Phage integrase, N-terminal SAM-like domain CH48_RS08170 PF13356 Arm DNA-binding domain CH48_RS08175 PF12833 Helix-turn-helix domain CH48_RS08180 PF02653 Branched-chain amino acid transport system / permease component CH48_RS08185 PF00005 ABC transporter CH48_RS08190 PF13407 Periplasmic binding protein domain CH48_RS08200 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH48_RS08200 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH48_RS08205 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_RS08205 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_RS08220 PF01757 Acyltransferase family CH48_RS08225 PF07690 Major Facilitator Superfamily CH48_RS08230 PF09107 Elongation factor SelB, winged helix CH48_RS08230 PF00009 Elongation factor Tu GTP binding domain CH48_RS08230 PF03144 Elongation factor Tu domain 2 CH48_RS08230 PF09106 Elongation factor SelB, winged helix CH48_RS08235 PF12390 Selenocysteine synthase N terminal CH48_RS08235 PF03841 L-seryl-tRNA selenium transferase CH48_RS08240 PF04216 Protein involved in formate dehydrogenase formation CH48_RS08245 PF01292 Prokaryotic cytochrome b561 CH48_RS08250 PF09163 Formate dehydrogenase N, transmembrane CH48_RS08250 PF13247 4Fe-4S dicluster domain CH48_RS08255 PF01568 Molydopterin dinucleotide binding domain CH48_RS08255 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS08255 PF00384 Molybdopterin oxidoreductase CH48_RS08260 PF01568 Molydopterin dinucleotide binding domain CH48_RS08260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS08260 PF00384 Molybdopterin oxidoreductase CH48_RS08265 PF02634 FdhD/NarQ family CH48_RS08270 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH48_RS08270 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH48_RS08275 PF02203 Tar ligand binding domain homologue CH48_RS08275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_RS08275 PF00672 HAMP domain CH48_RS08280 PF03475 3-alpha domain CH48_RS08280 PF03473 MOSC domain CH48_RS08285 PF01850 PIN domain CH48_RS08290 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CH48_RS08295 PF10928 Protein of unknown function (DUF2810) CH48_RS08300 PF00392 Bacterial regulatory proteins, gntR family CH48_RS08300 PF00155 Aminotransferase class I and II CH48_RS08310 PF05068 Mannitol repressor CH48_RS08315 PF01232 Mannitol dehydrogenase Rossmann domain CH48_RS08315 PF08125 Mannitol dehydrogenase C-terminal domain CH48_RS08320 PF02378 Phosphotransferase system, EIIC CH48_RS08320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH48_RS08320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_RS08325 PF11254 Protein of unknown function (DUF3053) CH48_RS08330 PF02092 Glycyl-tRNA synthetase beta subunit CH48_RS08330 PF05746 DALR anticodon binding domain CH48_RS08335 PF02091 Glycyl-tRNA synthetase alpha subunit CH48_RS08340 PF03352 Methyladenine glycosylase CH48_RS08345 PF00583 Acetyltransferase (GNAT) family CH48_RS08370 PF07690 Major Facilitator Superfamily CH48_RS08375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH48_RS08375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_RS08380 PF00128 Alpha amylase, catalytic domain CH48_RS08385 PF00155 Aminotransferase class I and II CH48_RS08390 PF06826 Predicted Permease Membrane Region CH48_RS08390 PF02080 TrkA-C domain CH48_RS08395 PF00011 Hsp20/alpha crystallin family CH48_RS08400 PF00011 Hsp20/alpha crystallin family CH48_RS08405 PF07119 Protein of unknown function (DUF1375) CH48_RS08410 PF07676 WD40-like Beta Propeller Repeat CH48_RS08410 PF12566 Protein of unknown function (DUF3748) CH48_RS08415 PF00291 Pyridoxal-phosphate dependent enzyme CH48_RS08420 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH48_RS08430 PF01751 Toprim domain CH48_RS08430 PF00986 DNA gyrase B subunit, carboxyl terminus CH48_RS08430 PF00204 DNA gyrase B CH48_RS08430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS08430 PF18053 DNA gyrase B subunit insert domain CH48_RS08435 PF02463 RecF/RecN/SMC N terminal domain CH48_RS08440 PF00712 DNA polymerase III beta subunit, N-terminal domain CH48_RS08440 PF02767 DNA polymerase III beta subunit, central domain CH48_RS08440 PF02768 DNA polymerase III beta subunit, C-terminal domain CH48_RS08445 PF00308 Bacterial dnaA protein CH48_RS08445 PF11638 DnaA N-terminal domain CH48_RS08445 PF08299 Bacterial dnaA protein helix-turn-helix CH48_RS08450 PF00468 Ribosomal protein L34 CH48_RS08455 PF00825 Ribonuclease P CH48_RS08460 PF01809 Putative membrane protein insertion efficiency factor CH48_RS08465 PF02096 60Kd inner membrane protein CH48_RS08465 PF14849 YidC periplasmic domain CH48_RS08470 PF10396 GTP-binding protein TrmE N-terminus CH48_RS08470 PF01926 50S ribosome-binding GTPase CH48_RS08470 PF12631 MnmE helical domain CH48_RS08475 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH48_RS08475 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH48_RS08475 PF07055 Enoyl reductase FAD binding domain CH48_RS08485 PF00005 ABC transporter CH48_RS08485 PF09383 NIL domain CH48_RS08490 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS08495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_RS08495 PF02203 Tar ligand binding domain homologue CH48_RS08495 PF00672 HAMP domain CH48_RS08500 PF03358 NADPH-dependent FMN reductase CH48_RS08505 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS08505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS08510 PF00196 Bacterial regulatory proteins, luxR family CH48_RS08510 PF00072 Response regulator receiver domain CH48_RS08520 PF00860 Permease family CH48_RS08525 PF13419 Haloacid dehalogenase-like hydrolase CH48_RS08530 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS08535 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS08540 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS08550 PF01895 PhoU domain CH48_RS08555 PF00005 ABC transporter CH48_RS08560 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS08565 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS08570 PF12849 PBP superfamily domain CH48_RS08580 PF01380 SIS domain CH48_RS08585 PF12804 MobA-like NTP transferase domain CH48_RS08585 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_RS08590 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH48_RS08590 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH48_RS08595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_RS08595 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH48_RS08600 PF00231 ATP synthase CH48_RS08605 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH48_RS08605 PF00306 ATP synthase alpha/beta chain, C terminal domain CH48_RS08605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_RS08610 PF00213 ATP synthase delta (OSCP) subunit CH48_RS08615 PF00430 ATP synthase B/B' CF(0) CH48_RS08620 PF00137 ATP synthase subunit C CH48_RS08625 PF00119 ATP synthase A chain CH48_RS08630 PF03899 ATP synthase I chain CH48_RS08635 PF02527 rRNA small subunit methyltransferase G CH48_RS08640 PF01134 Glucose inhibited division protein A CH48_RS08640 PF13932 GidA associated domain CH48_RS08645 PF00258 Flavodoxin CH48_RS08650 PF01037 Lrp/AsnC ligand binding domain CH48_RS08655 PF03590 Aspartate-ammonia ligase CH48_RS08665 PF05762 VWA domain containing CoxE-like protein CH48_RS08670 PF07728 AAA domain (dynein-related subfamily) CH48_RS08670 PF17868 AAA lid domain CH48_RS08670 PF12592 Protein of unknown function (DUF3763) CH48_RS08675 PF02705 K+ potassium transporter CH48_RS08680 PF05025 RbsD / FucU transport protein family CH48_RS08685 PF00005 ABC transporter CH48_RS08690 PF02653 Branched-chain amino acid transport system / permease component CH48_RS08695 PF13407 Periplasmic binding protein domain CH48_RS08700 PF00294 pfkB family carbohydrate kinase CH48_RS08705 PF00356 Bacterial regulatory proteins, lacI family CH48_RS08715 PF00392 Bacterial regulatory proteins, gntR family CH48_RS08715 PF07729 FCD domain CH48_RS08745 PF13276 HTH-like domain CH48_RS08745 PF00665 Integrase core domain CH48_RS08745 PF13333 Integrase core domain CH48_RS08750 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH48_RS08755 PF12804 MobA-like NTP transferase domain CH48_RS08760 PF06288 Protein of unknown function (DUF1040) CH48_RS08765 PF01636 Phosphotransferase enzyme family CH48_RS08770 PF01323 DSBA-like thioredoxin domain CH48_RS08775 PF01612 3'-5' exonuclease CH48_RS08775 PF00476 DNA polymerase family A CH48_RS08775 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH48_RS08775 PF01367 5'-3' exonuclease, C-terminal SAM fold CH48_RS08780 PF01926 50S ribosome-binding GTPase CH48_RS08785 PF04220 Der GTPase activator (YihI) CH48_RS08790 PF04055 Radical SAM superfamily CH48_RS08790 PF06969 HemN C-terminal domain CH48_RS08795 PF00072 Response regulator receiver domain CH48_RS08795 PF00158 Sigma-54 interaction domain CH48_RS08795 PF02954 Bacterial regulatory protein, Fis family CH48_RS08800 PF00989 PAS fold CH48_RS08800 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS08800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS08810 PF00120 Glutamine synthetase, catalytic domain CH48_RS08810 PF03951 Glutamine synthetase, beta-Grasp domain CH48_RS08815 PF00679 Elongation factor G C-terminus CH48_RS08815 PF00009 Elongation factor Tu GTP binding domain CH48_RS08815 PF03144 Elongation factor Tu domain 2 CH48_RS08820 PF13419 Haloacid dehalogenase-like hydrolase CH48_RS08825 PF03631 Virulence factor BrkB CH48_RS08830 PF02580 D-Tyr-tRNA(Tyr) deacylase CH48_RS08835 PF09500 Putative thioesterase (yiiD_Cterm) CH48_RS08835 PF00583 Acetyltransferase (GNAT) family CH48_RS08840 PF13693 Winged helix-turn-helix DNA-binding CH48_RS08860 PF05170 AsmA family CH48_RS08865 PF00860 Permease family CH48_RS08870 PF03616 Sodium/glutamate symporter CH48_RS08880 PF17191 RecG wedge domain CH48_RS08880 PF00270 DEAD/DEAH box helicase CH48_RS08880 PF00271 Helicase conserved C-terminal domain CH48_RS08885 PF12105 SpoU, rRNA methylase, C-terminal CH48_RS08885 PF00588 SpoU rRNA Methylase family CH48_RS08890 PF13291 ACT domain CH48_RS08890 PF04607 Region found in RelA / SpoT proteins CH48_RS08890 PF02824 TGS domain CH48_RS08895 PF01192 RNA polymerase Rpb6 CH48_RS08900 PF00625 Guanylate kinase CH48_RS08910 PF03458 UPF0126 domain CH48_RS08920 PF07662 Na+ dependent nucleoside transporter C-terminus CH48_RS08920 PF01773 Na+ dependent nucleoside transporter N-terminus CH48_RS08920 PF07670 Nucleoside recognition CH48_RS08925 PF00378 Enoyl-CoA hydratase/isomerase CH48_RS08930 PF13426 PAS domain CH48_RS08930 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS08930 PF00563 EAL domain CH48_RS08945 PF03755 YicC-like family, N-terminal region CH48_RS08945 PF08340 Domain of unknown function (DUF1732) CH48_RS08950 PF01138 3' exoribonuclease family, domain 1 CH48_RS08950 PF03725 3' exoribonuclease family, domain 2 CH48_RS08955 PF00156 Phosphoribosyl transferase domain CH48_RS08960 PF00440 Bacterial regulatory proteins, tetR family CH48_RS08965 PF00692 dUTPase CH48_RS08970 PF04127 DNA / pantothenate metabolism flavoprotein CH48_RS08970 PF02441 Flavoprotein CH48_RS08975 PF04002 RadC-like JAB domain CH48_RS08980 PF00830 Ribosomal L28 family CH48_RS08985 PF00471 Ribosomal protein L33 CH48_RS08990 PF06827 Zinc finger found in FPG and IleRS CH48_RS08990 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH48_RS08990 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH48_RS08995 PF01467 Cytidylyltransferase-like CH48_RS09000 PF00535 Glycosyl transferase family 2 CH48_RS09005 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH48_RS09010 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH48_RS09015 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH48_RS09020 PF01370 NAD dependent epimerase/dehydratase family CH48_RS09025 PF00155 Aminotransferase class I and II CH48_RS09030 PF00107 Zinc-binding dehydrogenase CH48_RS09030 PF08240 Alcohol dehydrogenase GroES-like domain CH48_RS09050 PF04748 Divergent polysaccharide deacetylase CH48_RS09055 PF01551 Peptidase family M23 CH48_RS09060 PF01676 Metalloenzyme superfamily CH48_RS09060 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH48_RS09065 PF00581 Rhodanese-like domain CH48_RS09070 PF00462 Glutaredoxin CH48_RS09075 PF02556 Preprotein translocase subunit SecB CH48_RS09080 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH48_RS09080 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH48_RS09085 PF06426 Serine acetyltransferase, N-terminal CH48_RS09085 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_RS09090 PF00588 SpoU rRNA Methylase family CH48_RS09095 PF12833 Helix-turn-helix domain CH48_RS09095 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH48_RS09095 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH48_RS09095 PF02805 Metal binding domain of Ada CH48_RS09100 PF16527 Two-component sensor protein CpxA, periplasmic domain CH48_RS09100 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS09100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS09100 PF00672 HAMP domain CH48_RS09105 PF00072 Response regulator receiver domain CH48_RS09105 PF00486 Transcriptional regulatory protein, C terminal CH48_RS09110 PF07813 LTXXQ motif family protein CH48_RS09115 PF16916 Dimerisation domain of Zinc Transporter CH48_RS09115 PF01545 Cation efflux family CH48_RS09120 PF00365 Phosphofructokinase CH48_RS09135 PF00121 Triosephosphate isomerase CH48_RS09140 PF07305 Protein of unknown function (DUF1454) CH48_RS09145 PF05656 Protein of unknown function (DUF805) CH48_RS09150 PF00175 Oxidoreductase NAD-binding domain CH48_RS09150 PF00970 Oxidoreductase FAD-binding domain CH48_RS09165 PF07690 Major Facilitator Superfamily CH48_RS09170 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH48_RS09175 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH48_RS09175 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH48_RS09180 PF00230 Major intrinsic protein CH48_RS09185 PF06005 Cell division protein ZapB CH48_RS09190 PF03737 Aldolase/RraA CH48_RS09195 PF01040 UbiA prenyltransferase family CH48_RS09200 PF07724 AAA domain (Cdc48 subfamily) CH48_RS09200 PF10431 C-terminal, D2-small domain, of ClpB protein CH48_RS09200 PF00004 ATPase family associated with various cellular activities (AAA) CH48_RS09205 PF00227 Proteasome subunit CH48_RS09210 PF05036 Sporulation related domain CH48_RS09215 PF00356 Bacterial regulatory proteins, lacI family CH48_RS09220 PF00271 Helicase conserved C-terminal domain CH48_RS09220 PF17764 3′ DNA-binding domain (3′BD) CH48_RS09220 PF18074 Primosomal protein N C-terminal domain CH48_RS09220 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH48_RS09220 PF00270 DEAD/DEAH box helicase CH48_RS09225 PF01197 Ribosomal protein L31 CH48_RS09230 PF01340 Met Apo-repressor, MetJ CH48_RS09235 PF01053 Cys/Met metabolism PLP-dependent enzyme CH48_RS09240 PF03447 Homoserine dehydrogenase, NAD binding domain CH48_RS09240 PF00742 Homoserine dehydrogenase CH48_RS09240 PF00696 Amino acid kinase family CH48_RS09245 PF02219 Methylenetetrahydrofolate reductase CH48_RS09250 PF00311 Phosphoenolpyruvate carboxylase CH48_RS09255 PF07687 Peptidase dimerisation domain CH48_RS09255 PF01546 Peptidase family M20/M25/M40 CH48_RS09260 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH48_RS09260 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH48_RS09265 PF00696 Amino acid kinase family CH48_RS09270 PF00206 Lyase CH48_RS09270 PF14698 Argininosuccinate lyase C-terminal CH48_RS09275 PF07715 TonB-dependent Receptor Plug Domain CH48_RS09275 PF00593 TonB dependent receptor CH48_RS09295 PF00005 ABC transporter CH48_RS09295 PF00664 ABC transporter transmembrane region CH48_RS09300 PF00529 HlyD membrane-fusion protein of T1SS CH48_RS09310 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_RS09310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH48_RS09315 PF08534 Redoxin CH48_RS09315 PF00462 Glutaredoxin CH48_RS09320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS09320 PF03466 LysR substrate binding domain CH48_RS09325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH48_RS09325 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_RS09330 PF00440 Bacterial regulatory proteins, tetR family CH48_RS09335 PF07226 Protein of unknown function (DUF1422) CH48_RS09345 PF05958 tRNA (Uracil-5-)-methyltransferase CH48_RS09350 PF07715 TonB-dependent Receptor Plug Domain CH48_RS09350 PF00593 TonB dependent receptor CH48_RS09355 PF01177 Asp/Glu/Hydantoin racemase CH48_RS09395 PF13407 Periplasmic binding protein domain CH48_RS09400 PF00005 ABC transporter CH48_RS09405 PF02653 Branched-chain amino acid transport system / permease component CH48_RS09410 PF02653 Branched-chain amino acid transport system / permease component CH48_RS09415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS09415 PF03466 LysR substrate binding domain CH48_RS09420 PF04219 Protein of unknown function, DUF CH48_RS09425 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH48_RS09425 PF01078 Magnesium chelatase, subunit ChlI CH48_RS09430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_RS09430 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_RS09430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_RS09440 PF01063 Amino-transferase class IV CH48_RS09445 PF00920 Dehydratase family CH48_RS09450 PF00291 Pyridoxal-phosphate dependent enzyme CH48_RS09450 PF00585 C-terminal regulatory domain of Threonine dehydratase CH48_RS09470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS09470 PF03466 LysR substrate binding domain CH48_RS09475 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH48_RS09475 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH48_RS09485 PF01320 Colicin immunity protein / pyocin immunity protein CH48_RS09490 PF01320 Colicin immunity protein / pyocin immunity protein CH48_RS09500 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_RS09500 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_RS09510 PF00577 Outer membrane usher protein CH48_RS09510 PF13954 PapC N-terminal domain CH48_RS09510 PF13953 PapC C-terminal domain CH48_RS09515 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_RS09515 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_RS09530 PF13361 UvrD-like helicase C-terminal domain CH48_RS09530 PF00580 UvrD/REP helicase N-terminal domain CH48_RS09535 PF00295 Glycosyl hydrolases family 28 CH48_RS09540 PF02541 Ppx/GppA phosphatase family CH48_RS09545 PF00271 Helicase conserved C-terminal domain CH48_RS09545 PF00270 DEAD/DEAH box helicase CH48_RS09550 PF00085 Thioredoxin CH48_RS09555 PF07498 Rho termination factor, N-terminal domain CH48_RS09555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_RS09555 PF07497 Rho termination factor, RNA-binding domain CH48_RS09565 PF00953 Glycosyl transferase family 4 CH48_RS09570 PF02706 Chain length determinant protein CH48_RS09575 PF02350 UDP-N-acetylglucosamine 2-epimerase CH48_RS09580 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH48_RS09580 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH48_RS09580 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH48_RS09585 PF16363 GDP-mannose 4,6 dehydratase CH48_RS09590 PF00483 Nucleotidyl transferase CH48_RS09600 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH48_RS09605 PF01943 Polysaccharide biosynthesis protein CH48_RS09610 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH48_RS09615 PF06899 WzyE protein, O-antigen assembly polymerase CH48_RS09620 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH48_RS09625 PF00324 Amino acid permease CH48_RS09655 PF07219 HemY protein N-terminus CH48_RS09655 PF07719 Tetratricopeptide repeat CH48_RS09660 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH48_RS09665 PF02602 Uroporphyrinogen-III synthase HemD CH48_RS09670 PF03900 Porphobilinogen deaminase, C-terminal domain CH48_RS09670 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH48_RS09675 PF01295 Adenylate cyclase, class-I CH48_RS09675 PF12633 Adenylate cyclase NT domain CH48_RS09680 PF01491 Frataxin-like domain CH48_RS09685 PF13627 Prokaryotic lipoprotein-attachment site CH48_RS09690 PF01678 Diaminopimelate epimerase CH48_RS09695 PF04340 Protein of unknown function, DUF484 CH48_RS09700 PF02899 Phage integrase, N-terminal SAM-like domain CH48_RS09700 PF00589 Phage integrase family CH48_RS09705 PF13419 Haloacid dehalogenase-like hydrolase CH48_RS09710 PF13361 UvrD-like helicase C-terminal domain CH48_RS09710 PF00580 UvrD/REP helicase N-terminal domain CH48_RS09725 PF09370 Phosphoenolpyruvate hydrolase-like CH48_RS09730 PF01544 CorA-like Mg2+ transporter protein CH48_RS09735 PF00892 EamA-like transporter family CH48_RS09740 PF03061 Thioesterase superfamily CH48_RS09745 PF02253 Phospholipase A1 CH48_RS09750 PF09382 RQC domain CH48_RS09750 PF00271 Helicase conserved C-terminal domain CH48_RS09750 PF00570 HRDC domain CH48_RS09750 PF16124 RecQ zinc-binding CH48_RS09750 PF00270 DEAD/DEAH box helicase CH48_RS09755 PF01810 LysE type translocator CH48_RS09760 PF01810 LysE type translocator CH48_RS09765 PF12146 Serine aminopeptidase, S33 CH48_RS09775 PF03009 Glycerophosphoryl diester phosphodiesterase family CH48_RS09780 PF07690 Major Facilitator Superfamily CH48_RS09785 PF04324 BFD-like [2Fe-2S] binding domain CH48_RS09785 PF01266 FAD dependent oxidoreductase CH48_RS09790 PF00890 FAD binding domain CH48_RS09795 PF13183 4Fe-4S dicluster domain CH48_RS09795 PF02754 Cysteine-rich domain CH48_RS09800 PF08786 DcrB CH48_RS09805 PF02592 Putative vitamin uptake transporter CH48_RS09810 PF01206 Sulfurtransferase TusA CH48_RS09815 PF00403 Heavy-metal-associated domain CH48_RS09820 PF07947 YhhN family CH48_RS09835 PF06611 Protein of unknown function (DUF1145) CH48_RS09845 PF00448 SRP54-type protein, GTPase domain CH48_RS09845 PF02881 SRP54-type protein, helical bundle domain CH48_RS09850 PF00005 ABC transporter CH48_RS09855 PF18075 FtsX extracellular domain CH48_RS09855 PF02687 FtsX-like permease family CH48_RS09860 PF04542 Sigma-70 region 2 CH48_RS09860 PF00140 Sigma-70 factor, region 1.2 CH48_RS09860 PF04545 Sigma-70, region 4 CH48_RS09875 PF12568 Acetyltransferase (GNAT) domain, PanZ CH48_RS09880 PF13458 Periplasmic binding protein CH48_RS09885 PF02653 Branched-chain amino acid transport system / permease component CH48_RS09890 PF02653 Branched-chain amino acid transport system / permease component CH48_RS09890 PF11862 Domain of unknown function (DUF3382) CH48_RS09895 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH48_RS09895 PF00005 ABC transporter CH48_RS09900 PF00005 ABC transporter CH48_RS09935 PF13416 Bacterial extracellular solute-binding protein CH48_RS09940 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS09945 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS09950 PF17912 MalK OB fold domain CH48_RS09950 PF00005 ABC transporter CH48_RS09955 PF03009 Glycerophosphoryl diester phosphodiesterase family CH48_RS09960 PF03547 Membrane transport protein CH48_RS09965 PF00892 EamA-like transporter family CH48_RS09970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS09970 PF03466 LysR substrate binding domain CH48_RS09975 PF01717 Cobalamin-independent synthase, Catalytic domain CH48_RS09975 PF08267 Cobalamin-independent synthase, N-terminal domain CH48_RS09980 PF01738 Dienelactone hydrolase family CH48_RS09985 PF01048 Phosphorylase superfamily CH48_RS10000 PF13722 5TM C-terminal transporter carbon starvation CstA CH48_RS10000 PF02554 Carbon starvation protein CstA CH48_RS10005 PF09335 SNARE associated Golgi protein CH48_RS10010 PF02646 RmuC family CH48_RS10015 PF01209 ubiE/COQ5 methyltransferase family CH48_RS10020 PF02036 SCP-2 sterol transfer family CH48_RS10025 PF03109 ABC1 family CH48_RS10030 PF02416 mttA/Hcf106 family CH48_RS10040 PF00902 Sec-independent protein translocase protein (TatC) CH48_RS10045 PF01026 TatD related DNase CH48_RS10050 PF00490 Delta-aminolevulinic acid dehydratase CH48_RS10055 PF02357 Transcription termination factor nusG CH48_RS10060 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH48_RS10065 PF00175 Oxidoreductase NAD-binding domain CH48_RS10065 PF00970 Oxidoreductase FAD-binding domain CH48_RS10070 PF00108 Thiolase, N-terminal domain CH48_RS10070 PF02803 Thiolase, C-terminal domain CH48_RS10075 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH48_RS10075 PF00378 Enoyl-CoA hydratase/isomerase CH48_RS10075 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH48_RS10080 PF00557 Metallopeptidase family M24 CH48_RS10085 PF09186 Domain of unknown function (DUF1949) CH48_RS10085 PF01205 Uncharacterized protein family UPF0029 CH48_RS10090 PF02386 Cation transport protein CH48_RS10095 PF12724 Flavodoxin domain CH48_RS10125 PF02371 Transposase IS116/IS110/IS902 family CH48_RS10125 PF01548 Transposase CH48_RS10130 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH48_RS10130 PF01565 FAD binding domain CH48_RS10135 PF02237 Biotin protein ligase C terminal domain CH48_RS10135 PF03099 Biotin/lipoate A/B protein ligase family CH48_RS10135 PF08279 HTH domain CH48_RS10140 PF00485 Phosphoribulokinase / Uridine kinase family CH48_RS10145 PF13673 Acetyltransferase (GNAT) domain CH48_RS10170 PF03144 Elongation factor Tu domain 2 CH48_RS10170 PF03143 Elongation factor Tu C-terminal domain CH48_RS10170 PF00009 Elongation factor Tu GTP binding domain CH48_RS10175 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH48_RS10180 PF02357 Transcription termination factor nusG CH48_RS10180 PF00467 KOW motif CH48_RS10185 PF00298 Ribosomal protein L11, RNA binding domain CH48_RS10185 PF03946 Ribosomal protein L11, N-terminal domain CH48_RS10190 PF00687 Ribosomal protein L1p/L10e family CH48_RS10195 PF00466 Ribosomal protein L10 CH48_RS10200 PF00542 Ribosomal protein L7/L12 C-terminal domain CH48_RS10200 PF16320 Ribosomal protein L7/L12 dimerisation domain CH48_RS10205 PF04563 RNA polymerase beta subunit CH48_RS10205 PF04565 RNA polymerase Rpb2, domain 3 CH48_RS10205 PF00562 RNA polymerase Rpb2, domain 6 CH48_RS10205 PF04561 RNA polymerase Rpb2, domain 2 CH48_RS10205 PF04560 RNA polymerase Rpb2, domain 7 CH48_RS10205 PF10385 RNA polymerase beta subunit external 1 domain CH48_RS10210 PF04997 RNA polymerase Rpb1, domain 1 CH48_RS10210 PF00623 RNA polymerase Rpb1, domain 2 CH48_RS10210 PF04983 RNA polymerase Rpb1, domain 3 CH48_RS10210 PF05000 RNA polymerase Rpb1, domain 4 CH48_RS10210 PF04998 RNA polymerase Rpb1, domain 5 CH48_RS10220 PF06968 Biotin and Thiamin Synthesis associated domain CH48_RS10220 PF04055 Radical SAM superfamily CH48_RS10225 PF05690 Thiazole biosynthesis protein ThiG CH48_RS10230 PF02597 ThiS family CH48_RS10235 PF00899 ThiF family CH48_RS10240 PF02581 Thiamine monophosphate synthase CH48_RS10245 PF01964 Radical SAM ThiC family CH48_RS10245 PF13667 ThiC-associated domain CH48_RS10250 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH48_RS10255 PF09297 NADH pyrophosphatase zinc ribbon domain CH48_RS10255 PF00293 NUDIX domain CH48_RS10260 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH48_RS10265 PF04493 Endonuclease V CH48_RS10270 PF04222 Protein of unknown function (DUF416) CH48_RS10275 PF00216 Bacterial DNA-binding protein CH48_RS10280 PF07356 Protein of unknown function (DUF1481) CH48_RS10285 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH48_RS10285 PF02844 Phosphoribosylglycinamide synthetase, N domain CH48_RS10285 PF02843 Phosphoribosylglycinamide synthetase, C domain CH48_RS10290 PF01808 AICARFT/IMPCHase bienzyme CH48_RS10290 PF02142 MGS-like domain CH48_RS10325 PF02371 Transposase IS116/IS110/IS902 family CH48_RS10325 PF01548 Transposase CH48_RS10330 PF04204 Homoserine O-succinyltransferase CH48_RS10335 PF01274 Malate synthase CH48_RS10340 PF00463 Isocitrate lyase family CH48_RS10345 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH48_RS10350 PF09339 IclR helix-turn-helix domain CH48_RS10350 PF01614 Bacterial transcriptional regulator CH48_RS10355 PF02574 Homocysteine S-methyltransferase CH48_RS10355 PF00809 Pterin binding enzyme CH48_RS10355 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH48_RS10355 PF02607 B12 binding domain CH48_RS10355 PF02310 B12 binding domain CH48_RS10360 PF05860 haemagglutination activity domain CH48_RS10360 PF13332 Hemagglutinin repeat CH48_RS10365 PF08479 POTRA domain, ShlB-type CH48_RS10365 PF17287 POTRA domain CH48_RS10365 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH48_RS10370 PF01758 Sodium Bile acid symporter family CH48_RS10375 PF00696 Amino acid kinase family CH48_RS10375 PF01842 ACT domain CH48_RS10380 PF00342 Phosphoglucose isomerase CH48_RS10385 PF06146 Phosphate-starvation-inducible E CH48_RS10390 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS10395 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS10395 PF14785 Maltose transport system permease protein MalF P2 domain CH48_RS10400 PF01547 Bacterial extracellular solute-binding protein CH48_RS10405 PF00005 ABC transporter CH48_RS10405 PF17912 MalK OB fold domain CH48_RS10410 PF02264 LamB porin CH48_RS10415 PF07148 Maltose operon periplasmic protein precursor (MalM) CH48_RS10425 PF04345 Chorismate lyase CH48_RS10430 PF01040 UbiA prenyltransferase family CH48_RS10435 PF01553 Acyltransferase CH48_RS10440 PF01219 Prokaryotic diacylglycerol kinase CH48_RS10445 PF01726 LexA DNA binding domain CH48_RS10445 PF00717 Peptidase S24-like CH48_RS10450 PF05532 CsbD-like CH48_RS10455 PF01475 Ferric uptake regulator family CH48_RS10460 PF01757 Acyltransferase family CH48_RS10465 PF01207 Dihydrouridine synthase (Dus) CH48_RS10470 PF09583 Phage shock protein G (Phageshock_PspG) CH48_RS10480 PF00107 Zinc-binding dehydrogenase CH48_RS10480 PF08240 Alcohol dehydrogenase GroES-like domain CH48_RS10485 PF00772 DnaB-like helicase N terminal domain CH48_RS10485 PF03796 DnaB-like helicase C terminal domain CH48_RS10490 PF00842 Alanine racemase, C-terminal domain CH48_RS10490 PF01168 Alanine racemase, N-terminal domain CH48_RS10495 PF00155 Aminotransferase class I and II CH48_RS10505 PF04237 YjbR CH48_RS10510 PF00005 ABC transporter CH48_RS10510 PF17760 UvrA interaction domain CH48_RS10510 PF17755 UvrA DNA-binding domain CH48_RS10515 PF00436 Single-strand binding protein family CH48_RS10520 PF13657 HipA N-terminal domain CH48_RS10520 PF07804 HipA-like C-terminal domain CH48_RS10535 PF00860 Permease family CH48_RS10540 PF00999 Sodium/hydrogen exchanger family CH48_RS10545 PF03466 LysR substrate binding domain CH48_RS10545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS10550 PF03788 LrgA family CH48_RS10560 PF00005 ABC transporter CH48_RS10565 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS10570 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS10575 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS10585 PF03279 Bacterial lipid A biosynthesis acyltransferase CH48_RS10590 PF00939 Sodium:sulfate symporter transmembrane region CH48_RS10595 PF00313 'Cold-shock' DNA-binding domain CH48_RS10600 PF00313 'Cold-shock' DNA-binding domain CH48_RS10605 PF05433 Glycine zipper 2TM domain CH48_RS10610 PF00072 Response regulator receiver domain CH48_RS10610 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS10615 PF02954 Bacterial regulatory protein, Fis family CH48_RS10620 PF01207 Dihydrouridine synthase (Dus) CH48_RS10630 PF00474 Sodium:solute symporter family CH48_RS10635 PF06196 Protein of unknown function (DUF997) CH48_RS10640 PF02785 Biotin carboxylase C-terminal domain CH48_RS10640 PF00289 Biotin carboxylase, N-terminal domain CH48_RS10640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH48_RS10645 PF00364 Biotin-requiring enzyme CH48_RS10650 PF01220 Dehydroquinase class II CH48_RS10655 PF01794 Ferric reductase like transmembrane component CH48_RS10660 PF00174 Oxidoreductase molybdopterin binding domain CH48_RS10665 PF08240 Alcohol dehydrogenase GroES-like domain CH48_RS10665 PF00107 Zinc-binding dehydrogenase CH48_RS10670 PF00563 EAL domain CH48_RS10670 PF17157 Gammaproteobacterial periplasmic sensor domain CH48_RS10670 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS10680 PF04085 rod shape-determining protein MreC CH48_RS10685 PF04093 rod shape-determining protein MreD CH48_RS10690 PF02545 Maf-like protein CH48_RS10695 PF10150 Ribonuclease E/G family CH48_RS10695 PF00575 S1 RNA binding domain CH48_RS10700 PF13116 Protein of unknown function CH48_RS10700 PF13502 AsmA-like C-terminal region CH48_RS10705 PF00795 Carbon-nitrogen hydrolase CH48_RS10710 PF01523 Putative modulator of DNA gyrase CH48_RS10725 PF14431 YwqJ-like deaminase CH48_RS10725 PF18807 Tripartite Tc toxins repeat CH48_RS10730 PF18807 Tripartite Tc toxins repeat CH48_RS10730 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH48_RS10755 PF18413 Neuraminidase-like domain CH48_RS10755 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain CH48_RS10770 PF03466 LysR substrate binding domain CH48_RS10770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS10775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS10775 PF03466 LysR substrate binding domain CH48_RS10780 PF07869 Protein of unknown function (DUF1656) CH48_RS10785 PF13533 Biotin-lipoyl like CH48_RS10790 PF04632 Fusaric acid resistance protein family CH48_RS10795 PF00171 Aldehyde dehydrogenase family CH48_RS10805 PF01337 Barstar (barnase inhibitor) CH48_RS10810 PF04751 Protein of unknown function (DUF615) CH48_RS10815 PF01523 Putative modulator of DNA gyrase CH48_RS10825 PF07361 Cytochrome b562 CH48_RS10830 PF14760 Rnk N-terminus CH48_RS10830 PF01272 Transcription elongation factor, GreA/GreB, C-term CH48_RS10860 PF01979 Amidohydrolase family CH48_RS10865 PF03841 L-seryl-tRNA selenium transferase CH48_RS10870 PF07071 KDGP aldolase CH48_RS10875 PF10282 Lactonase, 7-bladed beta-propeller CH48_RS10880 PF05043 Mga helix-turn-helix domain CH48_RS10880 PF00874 PRD domain CH48_RS10880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_RS10880 PF08279 HTH domain CH48_RS10885 PF01381 Helix-turn-helix CH48_RS10890 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB CH48_RS10895 PF00689 Cation transporting ATPase, C-terminus CH48_RS10895 PF00690 Cation transporter/ATPase, N-terminus CH48_RS10900 PF00356 Bacterial regulatory proteins, lacI family CH48_RS10905 PF00367 phosphotransferase system, EIIB CH48_RS10905 PF02378 Phosphotransferase system, EIIC CH48_RS10910 PF11941 Domain of unknown function (DUF3459) CH48_RS10910 PF00128 Alpha amylase, catalytic domain CH48_RS10925 PF04168 A predicted alpha-helical domain with a conserved ER motif. CH48_RS10925 PF14403 Circularly permuted ATP-grasp type 2 CH48_RS10930 PF14403 Circularly permuted ATP-grasp type 2 CH48_RS10935 PF01042 Endoribonuclease L-PSP CH48_RS10940 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH48_RS10940 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH48_RS10945 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH48_RS10945 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH48_RS10950 PF00381 PTS HPr component phosphorylation site CH48_RS10955 PF03668 P-loop ATPase protein family CH48_RS10960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_RS10965 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH48_RS10970 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH48_RS10970 PF04963 Sigma-54 factor, core binding domain CH48_RS10970 PF04552 Sigma-54, DNA binding domain CH48_RS10975 PF00005 ABC transporter CH48_RS10975 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH48_RS10980 PF03968 OstA-like protein CH48_RS10985 PF06835 Lipopolysaccharide-assembly, LptC-related CH48_RS10995 PF00571 CBS domain CH48_RS10995 PF01380 SIS domain CH48_RS11000 PF01699 Sodium/calcium exchanger protein CH48_RS11005 PF00005 ABC transporter CH48_RS11010 PF02405 Permease MlaE CH48_RS11015 PF02470 MlaD protein CH48_RS11020 PF05494 MlaC protein CH48_RS11025 PF13466 STAS domain CH48_RS11030 PF01722 BolA-like protein CH48_RS11035 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH48_RS11040 PF13180 PDZ domain CH48_RS11045 PF00595 PDZ domain CH48_RS11045 PF13180 PDZ domain CH48_RS11050 PF06295 Protein of unknown function (DUF1043) CH48_RS11055 PF03969 AFG1-like ATPase CH48_RS11060 PF00572 Ribosomal protein L13 CH48_RS11065 PF00380 Ribosomal protein S9/S16 CH48_RS11070 PF00043 Glutathione S-transferase, C-terminal domain CH48_RS11070 PF02798 Glutathione S-transferase, N-terminal domain CH48_RS11075 PF04386 Stringent starvation protein B CH48_RS11090 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_RS11090 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH48_RS11095 PF01493 GXGXG motif CH48_RS11095 PF01645 Conserved region in glutamate synthase CH48_RS11095 PF04898 Glutamate synthase central domain CH48_RS11095 PF00310 Glutamine amidotransferases class-II CH48_RS11100 PF16199 Radical_SAM C-terminal domain CH48_RS11100 PF04055 Radical SAM superfamily CH48_RS11105 PF00072 Response regulator receiver domain CH48_RS11105 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH48_RS11105 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS11105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS11105 PF01627 Hpt domain CH48_RS11105 PF00989 PAS fold CH48_RS11115 PF00912 Transglycosylase CH48_RS11120 PF04972 BON domain CH48_RS11125 PF13580 SIS domain CH48_RS11130 PF02021 Uncharacterised protein family UPF0102 CH48_RS11135 PF04348 LppC putative lipoprotein CH48_RS11140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_RS11155 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_RS11155 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_RS11160 PF00577 Outer membrane usher protein CH48_RS11160 PF13954 PapC N-terminal domain CH48_RS11160 PF13953 PapC C-terminal domain CH48_RS11170 PF03466 LysR substrate binding domain CH48_RS11170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS11175 PF00248 Aldo/keto reductase family CH48_RS11180 PF00107 Zinc-binding dehydrogenase CH48_RS11180 PF08240 Alcohol dehydrogenase GroES-like domain CH48_RS11185 PF17954 Quercetinase C-terminal cupin domain CH48_RS11185 PF02678 Pirin CH48_RS11190 PF03466 LysR substrate binding domain CH48_RS11190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS11195 PF13409 Glutathione S-transferase, N-terminal domain CH48_RS11200 PF07681 DoxX CH48_RS11205 PF13997 YqjK-like protein CH48_RS11210 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH48_RS11215 PF05957 Bacterial protein of unknown function (DUF883) CH48_RS11225 PF13721 SecD export protein N-terminal TM region CH48_RS11230 PF09335 SNARE associated Golgi protein CH48_RS11240 PF00392 Bacterial regulatory proteins, gntR family CH48_RS11240 PF07729 FCD domain CH48_RS11245 PF07690 Major Facilitator Superfamily CH48_RS11250 PF02614 Glucuronate isomerase CH48_RS11255 PF01232 Mannitol dehydrogenase Rossmann domain CH48_RS11255 PF08125 Mannitol dehydrogenase C-terminal domain CH48_RS11260 PF08666 SAF domain CH48_RS11260 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH48_RS11265 PF10688 Bacterial inner membrane protein CH48_RS11270 PF00375 Sodium:dicarboxylate symporter family CH48_RS11275 PF03741 Integral membrane protein TerC family CH48_RS11285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH48_RS11290 PF01863 Protein of unknown function DUF45 CH48_RS11305 PF03797 Autotransporter beta-domain CH48_RS11310 PF05175 Methyltransferase small domain CH48_RS11320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH48_RS11320 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_RS11325 PF00892 EamA-like transporter family CH48_RS11330 PF03729 Short repeat of unknown function (DUF308) CH48_RS11340 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH48_RS11345 PF13520 Amino acid permease CH48_RS11350 PF04960 Glutaminase CH48_RS11355 PF02378 Phosphotransferase system, EIIC CH48_RS11355 PF00367 phosphotransferase system, EIIB CH48_RS11360 PF13580 SIS domain CH48_RS11365 PF01380 SIS domain CH48_RS11365 PF01418 Helix-turn-helix domain, rpiR family CH48_RS11370 PF00933 Glycosyl hydrolase family 3 N terminal domain CH48_RS11370 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH48_RS11380 PF07075 Protein of unknown function (DUF1343) CH48_RS11395 PF04542 Sigma-70 region 2 CH48_RS11395 PF03979 Sigma-70 factor, region 1.1 CH48_RS11395 PF04539 Sigma-70 region 3 CH48_RS11395 PF00140 Sigma-70 factor, region 1.2 CH48_RS11395 PF04546 Sigma-70, non-essential region CH48_RS11395 PF04545 Sigma-70, region 4 CH48_RS11400 PF08278 DNA primase DnaG DnaB-binding CH48_RS11400 PF10410 DnaB-helicase binding domain of primase CH48_RS11400 PF08275 DNA primase catalytic core, N-terminal domain CH48_RS11400 PF01807 CHC2 zinc finger CH48_RS11405 PF01165 Ribosomal protein S21 CH48_RS11410 PF00814 Glycoprotease family CH48_RS11415 PF02660 Glycerol-3-phosphate acyltransferase CH48_RS11420 PF02152 Dihydroneopterin aldolase CH48_RS11425 PF02673 Bacitracin resistance protein BacA CH48_RS11430 PF12627 Probable RNA and SrmB- binding site of polymerase A CH48_RS11430 PF01743 Poly A polymerase head domain CH48_RS11430 PF01966 HD domain CH48_RS11435 PF08239 Bacterial SH3 domain CH48_RS11440 PF01928 CYTH domain CH48_RS11445 PF03710 Glutamate-ammonia ligase adenylyltransferase CH48_RS11445 PF08335 GlnD PII-uridylyltransferase CH48_RS11450 PF00294 pfkB family carbohydrate kinase CH48_RS11450 PF01467 Cytidylyltransferase-like CH48_RS11455 PF13520 Amino acid permease CH48_RS11460 PF04380 Membrane fusogenic activity CH48_RS11465 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH48_RS11470 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH48_RS11475 PF03738 Glutathionylspermidine synthase preATP-grasp CH48_RS11480 PF06693 Protein of unknown function (DUF1190) CH48_RS11485 PF02321 Outer membrane efflux protein CH48_RS11490 PF00293 NUDIX domain CH48_RS11495 PF06853 Protein of unknown function (DUF1249) CH48_RS11500 PF00149 Calcineurin-like phosphoesterase CH48_RS11505 PF05728 Uncharacterised protein family (UPF0227) CH48_RS11510 PF00204 DNA gyrase B CH48_RS11510 PF01751 Toprim domain CH48_RS11510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS11510 PF00986 DNA gyrase B subunit, carboxyl terminus CH48_RS11515 PF03466 LysR substrate binding domain CH48_RS11515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS11520 PF03992 Antibiotic biosynthesis monooxygenase CH48_RS11525 PF02525 Flavodoxin-like fold CH48_RS11530 PF03989 DNA gyrase C-terminal domain, beta-propeller CH48_RS11530 PF00521 DNA gyrase/topoisomerase IV, subunit A CH48_RS11535 PF01553 Acyltransferase CH48_RS11540 PF07731 Multicopper oxidase CH48_RS11540 PF07732 Multicopper oxidase CH48_RS11545 PF08497 Radical SAM N-terminal CH48_RS11545 PF11842 Domain of unknown function (DUF3362) CH48_RS11545 PF04055 Radical SAM superfamily CH48_RS11550 PF00248 Aldo/keto reductase family CH48_RS11555 PF00465 Iron-containing alcohol dehydrogenase CH48_RS11560 PF12833 Helix-turn-helix domain CH48_RS11560 PF06719 AraC-type transcriptional regulator N-terminus CH48_RS11565 PF09335 SNARE associated Golgi protein CH48_RS11570 PF01053 Cys/Met metabolism PLP-dependent enzyme CH48_RS11575 PF01618 MotA/TolQ/ExbB proton channel family CH48_RS11580 PF02472 Biopolymer transport protein ExbD/TolR CH48_RS11615 PF00437 Type II/IV secretion system protein CH48_RS11630 PF04972 BON domain CH48_RS11630 PF13629 Pilus formation protein N terminal region CH48_RS11630 PF00263 Bacterial type II and III secretion system protein CH48_RS11655 PF13532 2OG-Fe(II) oxygenase superfamily CH48_RS11660 PF00873 AcrB/AcrD/AcrF family CH48_RS11665 PF02586 SOS response associated peptidase (SRAP) CH48_RS11680 PF12833 Helix-turn-helix domain CH48_RS11700 PF02687 FtsX-like permease family CH48_RS11700 PF00005 ABC transporter CH48_RS11700 PF12704 MacB-like periplasmic core domain CH48_RS11705 PF12833 Helix-turn-helix domain CH48_RS11715 PF13276 HTH-like domain CH48_RS11715 PF00665 Integrase core domain CH48_RS11715 PF13333 Integrase core domain CH48_RS11725 PF11806 Domain of unknown function (DUF3327) CH48_RS11725 PF00756 Putative esterase CH48_RS11730 PF00005 ABC transporter CH48_RS11735 PF01032 FecCD transport family CH48_RS11740 PF01032 FecCD transport family CH48_RS11745 PF01497 Periplasmic binding protein CH48_RS11750 PF07690 Major Facilitator Superfamily CH48_RS11755 PF01370 NAD dependent epimerase/dehydratase family CH48_RS11760 PF00672 HAMP domain CH48_RS11760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_RS11760 PF02203 Tar ligand binding domain homologue CH48_RS11770 PF00771 FHIPEP family CH48_RS11775 PF01312 FlhB HrpN YscU SpaS Family CH48_RS11780 PF01311 Bacterial export proteins, family 1 CH48_RS11785 PF01313 Bacterial export proteins, family 3 CH48_RS11790 PF00813 FliP family CH48_RS11795 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH48_RS11805 PF00158 Sigma-54 interaction domain CH48_RS11805 PF02954 Bacterial regulatory protein, Fis family CH48_RS11805 PF00072 Response regulator receiver domain CH48_RS11810 PF02049 Flagellar hook-basal body complex protein FliE CH48_RS11815 PF08345 Flagellar M-ring protein C-terminal CH48_RS11815 PF01514 Secretory protein of YscJ/FliF family CH48_RS11830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_RS11830 PF18269 T3SS EscN ATPase C-terminal domain CH48_RS11860 PF00460 Flagella basal body rod protein CH48_RS11865 PF00460 Flagella basal body rod protein CH48_RS11865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_RS11870 PF13860 FlgD Ig-like domain CH48_RS11870 PF13861 FlgD Tudor-like domain CH48_RS11870 PF03963 Flagellar hook capping protein - N-terminal region CH48_RS11875 PF00460 Flagella basal body rod protein CH48_RS11875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_RS11875 PF07559 Flagellar basal body protein FlaE CH48_RS11880 PF00460 Flagella basal body rod protein CH48_RS11880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_RS11885 PF00460 Flagella basal body rod protein CH48_RS11885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_RS11890 PF02107 Flagellar L-ring protein CH48_RS11895 PF02119 Flagellar P-ring protein CH48_RS11925 PF00486 Transcriptional regulatory protein, C terminal CH48_RS11925 PF18500 CadC C-terminal domain 1 CH48_RS11930 PF00669 Bacterial flagellin N-terminal helical region CH48_RS11930 PF00700 Bacterial flagellin C-terminal helical region CH48_RS11935 PF07196 Flagellin hook IN motif CH48_RS11935 PF07195 Flagellar hook-associated protein 2 C-terminus CH48_RS11935 PF02465 Flagellar hook-associated protein 2 N-terminus CH48_RS11940 PF02561 Flagellar protein FliS CH48_RS11960 PF04545 Sigma-70, region 4 CH48_RS11960 PF04542 Sigma-70 region 2 CH48_RS11965 PF01618 MotA/TolQ/ExbB proton channel family CH48_RS11970 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH48_RS11970 PF00691 OmpA family CH48_RS11975 PF05433 Glycine zipper 2TM domain CH48_RS11980 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH48_RS11980 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CH48_RS11985 PF13247 4Fe-4S dicluster domain CH48_RS11990 PF03916 Polysulphide reductase, NrfD CH48_RS11995 PF00374 Nickel-dependent hydrogenase CH48_RS12000 PF01750 Hydrogenase maturation protease CH48_RS12005 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CH48_RS12010 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH48_RS12015 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH48_RS12020 PF01455 HupF/HypC family CH48_RS12025 PF01924 Hydrogenase formation hypA family CH48_RS12030 PF02769 AIR synthase related protein, C-terminal domain CH48_RS12030 PF00586 AIR synthase related protein, N-terminal domain CH48_RS12035 PF07503 HypF finger CH48_RS12035 PF01300 Telomere recombination CH48_RS12035 PF17788 HypF Kae1-like domain CH48_RS12035 PF00708 Acylphosphatase CH48_RS12040 PF02661 Fic/DOC family CH48_RS12040 PF13784 Fic/DOC family N-terminal CH48_RS12045 PF02110 Hydroxyethylthiazole kinase family CH48_RS12055 PF08448 PAS fold CH48_RS12055 PF08447 PAS fold CH48_RS12055 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS12055 PF00563 EAL domain CH48_RS12060 PF13533 Biotin-lipoyl like CH48_RS12065 PF00873 AcrB/AcrD/AcrF family CH48_RS12075 PF08946 Osmosensory transporter coiled coil CH48_RS12075 PF00083 Sugar (and other) transporter CH48_RS12090 PF02690 Na+/Pi-cotransporter CH48_RS12095 PF01156 Inosine-uridine preferring nucleoside hydrolase CH48_RS12100 PF00356 Bacterial regulatory proteins, lacI family CH48_RS12105 PF07690 Major Facilitator Superfamily CH48_RS12105 PF00083 Sugar (and other) transporter CH48_RS12120 PF00892 EamA-like transporter family CH48_RS12135 PF01497 Periplasmic binding protein CH48_RS12140 PF01032 FecCD transport family CH48_RS12145 PF01032 FecCD transport family CH48_RS12150 PF00005 ABC transporter CH48_RS12155 PF00557 Metallopeptidase family M24 CH48_RS12175 PF00529 HlyD membrane-fusion protein of T1SS CH48_RS12175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_RS12180 PF04632 Fusaric acid resistance protein family CH48_RS12190 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH48_RS12190 PF01276 Orn/Lys/Arg decarboxylase, major domain CH48_RS12190 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH48_RS12195 PF13520 Amino acid permease CH48_RS12210 PF03400 IS1 transposase CH48_RS12215 PF12759 InsA C-terminal domain CH48_RS12215 PF03811 InsA N-terminal domain CH48_RS12235 PF00589 Phage integrase family CH48_RS12250 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH48_RS12250 PF01276 Orn/Lys/Arg decarboxylase, major domain CH48_RS12250 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH48_RS12260 PF01464 Transglycosylase SLT domain CH48_RS12260 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH48_RS12265 PF04362 Bacterial Fe(2+) trafficking CH48_RS12270 PF14815 NUDIX domain CH48_RS12270 PF00730 HhH-GPD superfamily base excision DNA repair protein CH48_RS12270 PF00633 Helix-hairpin-helix motif CH48_RS12270 PF10576 Iron-sulfur binding domain of endonuclease III CH48_RS12275 PF02390 Putative methyltransferase CH48_RS12280 PF04320 Protein with unknown function (DUF469) CH48_RS12285 PF04960 Glutaminase CH48_RS12290 PF11101 Protein of unknown function (DUF2884) CH48_RS12295 PF04055 Radical SAM superfamily CH48_RS12295 PF06969 HemN C-terminal domain CH48_RS12300 PF01725 Ham1 family CH48_RS12305 PF02594 Uncharacterised ACR, YggU family COG1872 CH48_RS12310 PF02325 YGGT family CH48_RS12315 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH48_RS12315 PF03807 NADP oxidoreductase coenzyme F420-dependent CH48_RS12320 PF01168 Alanine racemase, N-terminal domain CH48_RS12325 PF00437 Type II/IV secretion system protein CH48_RS12330 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH48_RS12335 PF00795 Carbon-nitrogen hydrolase CH48_RS12340 PF03652 Holliday junction resolvase CH48_RS12345 PF02622 Uncharacterized ACR, COG1678 CH48_RS12350 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH48_RS12350 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH48_RS12355 PF04452 RNA methyltransferase CH48_RS12360 PF04231 Endonuclease I CH48_RS12365 PF10263 SprT-like family CH48_RS12365 PF17283 SprT-like zinc ribbon domain CH48_RS12375 PF04143 Sulphur transport CH48_RS12385 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH48_RS12385 PF02772 S-adenosylmethionine synthetase, central domain CH48_RS12385 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH48_RS12390 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH48_RS12390 PF17810 Arginine decarboxylase helical bundle domain CH48_RS12390 PF17944 Arginine decarboxylase C-terminal helical extension CH48_RS12395 PF00355 Rieske [2Fe-2S] domain CH48_RS12400 PF01435 Peptidase family M48 CH48_RS12405 PF02779 Transketolase, pyrimidine binding domain CH48_RS12405 PF02780 Transketolase, C-terminal domain CH48_RS12405 PF00456 Transketolase, thiamine diphosphate binding domain CH48_RS12410 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH48_RS12410 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH48_RS12415 PF00162 Phosphoglycerate kinase CH48_RS12420 PF01116 Fructose-bisphosphate aldolase class-II CH48_RS12425 PF09013 YopH, N-terminal CH48_RS12425 PF00102 Protein-tyrosine phosphatase CH48_RS12430 PF00924 Mechanosensitive ion channel CH48_RS12430 PF05552 Conserved TM helix CH48_RS12440 PF01810 LysE type translocator CH48_RS12445 PF04402 Protein of unknown function (DUF541) CH48_RS12450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS12450 PF03466 LysR substrate binding domain CH48_RS12455 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH48_RS12460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_RS12460 PF01842 ACT domain CH48_RS12460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH48_RS12490 PF00080 Copper/zinc superoxide dismutase (SODC) CH48_RS12495 PF04055 Radical SAM superfamily CH48_RS12520 PF01242 6-pyruvoyl tetrahydropterin synthase CH48_RS12525 PF00258 Flavodoxin CH48_RS12525 PF00667 FAD binding domain CH48_RS12525 PF00175 Oxidoreductase NAD-binding domain CH48_RS12530 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH48_RS12530 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH48_RS12535 PF01507 Phosphoadenosine phosphosulfate reductase family CH48_RS12550 PF04389 Peptidase family M28 CH48_RS12555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_RS12555 PF14824 Sirohaem biosynthesis protein central CH48_RS12555 PF10414 Sirohaem synthase dimerisation region CH48_RS12560 PF01507 Phosphoadenosine phosphosulfate reductase family CH48_RS12565 PF00009 Elongation factor Tu GTP binding domain CH48_RS12575 PF12084 Protein of unknown function (DUF3561) CH48_RS12580 PF04977 Septum formation initiator CH48_RS12585 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH48_RS12590 PF02542 YgbB family CH48_RS12595 PF01142 tRNA pseudouridine synthase D (TruD) CH48_RS12600 PF01975 Survival protein SurE CH48_RS12610 PF01551 Peptidase family M23 CH48_RS12610 PF01476 LysM domain CH48_RS12615 PF04542 Sigma-70 region 2 CH48_RS12615 PF04539 Sigma-70 region 3 CH48_RS12615 PF04545 Sigma-70, region 4 CH48_RS12615 PF00140 Sigma-70 factor, region 1.2 CH48_RS12620 PF05190 MutS family domain IV CH48_RS12620 PF05192 MutS domain III CH48_RS12620 PF05188 MutS domain II CH48_RS12620 PF00488 MutS domain V CH48_RS12620 PF01624 MutS domain I CH48_RS12635 PF00419 Fimbrial protein CH48_RS12640 PF00419 Fimbrial protein CH48_RS12650 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_RS12650 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_RS12660 PF00419 Fimbrial protein CH48_RS12665 PF00419 Fimbrial protein CH48_RS12690 PF03412 Peptidase C39 family CH48_RS12690 PF00005 ABC transporter CH48_RS12690 PF00664 ABC transporter transmembrane region CH48_RS12695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_RS12700 PF02687 FtsX-like permease family CH48_RS12700 PF00005 ABC transporter CH48_RS12700 PF12704 MacB-like periplasmic core domain CH48_RS12705 PF02321 Outer membrane efflux protein CH48_RS12710 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_RS12710 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_RS12735 PF00155 Aminotransferase class I and II CH48_RS12740 PF14376 Haem-binding domain CH48_RS12740 PF00034 Cytochrome c CH48_RS12740 PF03150 Di-haem cytochrome c peroxidase CH48_RS12750 PF03764 Elongation factor G, domain IV CH48_RS12750 PF03144 Elongation factor Tu domain 2 CH48_RS12750 PF00679 Elongation factor G C-terminus CH48_RS12750 PF00009 Elongation factor Tu GTP binding domain CH48_RS12750 PF14492 Elongation Factor G, domain II CH48_RS12755 PF01022 Bacterial regulatory protein, arsR family CH48_RS12760 PF00107 Zinc-binding dehydrogenase CH48_RS12760 PF08240 Alcohol dehydrogenase GroES-like domain CH48_RS12765 PF03613 PTS system mannose/fructose/sorbose family IID component CH48_RS12770 PF03609 PTS system sorbose-specific iic component CH48_RS12775 PF03830 PTS system sorbose subfamily IIB component CH48_RS12780 PF03610 PTS system fructose IIA component CH48_RS12785 PF13936 Helix-turn-helix domain CH48_RS12785 PF04198 Putative sugar-binding domain CH48_RS12790 PF00795 Carbon-nitrogen hydrolase CH48_RS12810 PF00005 ABC transporter CH48_RS12815 PF00005 ABC transporter CH48_RS12820 PF11862 Domain of unknown function (DUF3382) CH48_RS12820 PF02653 Branched-chain amino acid transport system / permease component CH48_RS12825 PF02653 Branched-chain amino acid transport system / permease component CH48_RS12830 PF13458 Periplasmic binding protein CH48_RS12835 PF05681 Fumarate hydratase (Fumerase) CH48_RS12835 PF05683 Fumarase C-terminus CH48_RS12840 PF00384 Molybdopterin oxidoreductase CH48_RS12840 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS12840 PF01568 Molydopterin dinucleotide binding domain CH48_RS12845 PF12800 4Fe-4S binding domain CH48_RS12845 PF13247 4Fe-4S dicluster domain CH48_RS12850 PF04976 DMSO reductase anchor subunit (DmsC) CH48_RS12855 PF02613 Nitrate reductase delta subunit CH48_RS12865 PF07690 Major Facilitator Superfamily CH48_RS12870 PF02464 Competence-damaged protein CH48_RS12875 PF00154 recA bacterial DNA recombination protein CH48_RS12880 PF02631 RecX family CH48_RS12885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH48_RS12885 PF01411 tRNA synthetases class II (A) CH48_RS12885 PF02272 DHHA1 domain CH48_RS12890 PF02599 Global regulator protein family CH48_RS12915 PF13419 Haloacid dehalogenase-like hydrolase CH48_RS12920 PF09335 SNARE associated Golgi protein CH48_RS12925 PF04262 Glutamate-cysteine ligase CH48_RS12930 PF02664 S-Ribosylhomocysteinase (LuxS) CH48_RS12940 PF03471 Transporter associated domain CH48_RS12940 PF00571 CBS domain CH48_RS12940 PF01595 Cyclin M transmembrane N-terminal domain CH48_RS12945 PF01578 Cytochrome C assembly protein CH48_RS12950 PF02881 SRP54-type protein, helical bundle domain CH48_RS12950 PF00448 SRP54-type protein, GTPase domain CH48_RS12950 PF02978 Signal peptide binding domain CH48_RS12955 PF00886 Ribosomal protein S16 CH48_RS12960 PF05239 PRC-barrel domain CH48_RS12960 PF01782 RimM N-terminal domain CH48_RS12965 PF01746 tRNA (Guanine-1)-methyltransferase CH48_RS12970 PF01245 Ribosomal protein L19 CH48_RS12975 PF04338 Protein of unknown function, DUF481 CH48_RS12980 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH48_RS12985 PF04397 LytTr DNA-binding domain CH48_RS12985 PF00072 Response regulator receiver domain CH48_RS12990 PF00793 DAHP synthetase I family CH48_RS12995 PF02153 Prephenate dehydrogenase CH48_RS12995 PF01817 Chorismate mutase type II CH48_RS13000 PF01817 Chorismate mutase type II CH48_RS13000 PF00800 Prephenate dehydratase CH48_RS13005 PF01548 Transposase CH48_RS13005 PF02371 Transposase IS116/IS110/IS902 family CH48_RS13010 PF01548 Transposase CH48_RS13010 PF02371 Transposase IS116/IS110/IS902 family CH48_RS13015 PF02861 Clp amino terminal domain, pathogenicity island component CH48_RS13015 PF10431 C-terminal, D2-small domain, of ClpB protein CH48_RS13015 PF17871 AAA lid domain CH48_RS13015 PF07724 AAA domain (Cdc48 subfamily) CH48_RS13015 PF00004 ATPase family associated with various cellular activities (AAA) CH48_RS13020 PF02578 Multi-copper polyphenol oxidoreductase laccase CH48_RS13025 PF00849 RNA pseudouridylate synthase CH48_RS13025 PF01479 S4 domain CH48_RS13030 PF13525 Outer membrane lipoprotein CH48_RS13035 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH48_RS13065 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH48_RS13070 PF13091 PLD-like domain CH48_RS13075 PF13380 CoA binding domain CH48_RS13075 PF00583 Acetyltransferase (GNAT) family CH48_RS13075 PF13607 Succinyl-CoA ligase like flavodoxin domain CH48_RS13080 PF03942 DTW domain CH48_RS13085 PF00085 Thioredoxin CH48_RS13090 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH48_RS13090 PF00588 SpoU rRNA Methylase family CH48_RS13105 PF07690 Major Facilitator Superfamily CH48_RS13110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_RS13110 PF00529 HlyD membrane-fusion protein of T1SS CH48_RS13115 PF02321 Outer membrane efflux protein CH48_RS13120 PF01047 MarR family CH48_RS13125 PF05437 Branched-chain amino acid transport protein (AzlD) CH48_RS13130 PF03591 AzlC protein CH48_RS13135 PF07690 Major Facilitator Superfamily CH48_RS13155 PF01425 Amidase CH48_RS13170 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS13175 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS13180 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS13185 PF00005 ABC transporter CH48_RS13190 PF00266 Aminotransferase class-V CH48_RS13195 PF07687 Peptidase dimerisation domain CH48_RS13195 PF01546 Peptidase family M20/M25/M40 CH48_RS13200 PF00795 Carbon-nitrogen hydrolase CH48_RS13205 PF00155 Aminotransferase class I and II CH48_RS13210 PF00596 Class II Aldolase and Adducin N-terminal domain CH48_RS13220 PF03079 ARD/ARD' family CH48_RS13225 PF01008 Initiation factor 2 subunit family CH48_RS13230 PF01636 Phosphotransferase enzyme family CH48_RS13235 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH48_RS13235 PF08479 POTRA domain, ShlB-type CH48_RS13240 PF05860 haemagglutination activity domain CH48_RS13245 PF18254 HMW1 domain 2 CH48_RS13245 PF18071 HMW1C N-terminal CH48_RS13250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH48_RS13250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH48_RS13250 PF09317 Domain of unknown function (DUF1974) CH48_RS13255 PF13580 SIS domain CH48_RS13260 PF13230 Glutamine amidotransferases class-II CH48_RS13265 PF03734 L,D-transpeptidase catalytic domain CH48_RS13270 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH48_RS13270 PF11973 NQRA C-terminal domain CH48_RS13275 PF03116 NQR2, RnfD, RnfE family CH48_RS13280 PF04205 FMN-binding domain CH48_RS13285 PF02508 Rnf-Nqr subunit, membrane protein CH48_RS13290 PF02508 Rnf-Nqr subunit, membrane protein CH48_RS13295 PF00111 2Fe-2S iron-sulfur cluster binding domain CH48_RS13295 PF00970 Oxidoreductase FAD-binding domain CH48_RS13295 PF00175 Oxidoreductase NAD-binding domain CH48_RS13300 PF02424 ApbE family CH48_RS13305 PF04400 (Na+)-NQR maturation NqrM CH48_RS13310 PF03009 Glycerophosphoryl diester phosphodiesterase family CH48_RS13315 PF07478 D-ala D-ala ligase C-terminus CH48_RS13315 PF01820 D-ala D-ala ligase N-terminus CH48_RS13320 PF08348 YheO-like PAS domain CH48_RS13320 PF13309 HTH domain CH48_RS13325 PF00291 Pyridoxal-phosphate dependent enzyme CH48_RS13335 PF00817 impB/mucB/samB family CH48_RS13335 PF11799 impB/mucB/samB family C-terminal domain CH48_RS13335 PF11798 IMS family HHH motif CH48_RS13340 PF07687 Peptidase dimerisation domain CH48_RS13340 PF01546 Peptidase family M20/M25/M40 CH48_RS13345 PF00156 Phosphoribosyl transferase domain CH48_RS13350 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CH48_RS13355 PF07417 Sigma factor-binding transcriptional regulator Crl CH48_RS13360 PF00696 Amino acid kinase family CH48_RS13360 PF01472 PUA domain CH48_RS13365 PF00171 Aldehyde dehydrogenase family CH48_RS13370 PF07702 UTRA domain CH48_RS13370 PF00392 Bacterial regulatory proteins, gntR family CH48_RS13375 PF00367 phosphotransferase system, EIIB CH48_RS13375 PF02378 Phosphotransferase system, EIIC CH48_RS13380 PF02056 Family 4 glycosyl hydrolase CH48_RS13380 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH48_RS13385 PF07238 PilZ domain CH48_RS13385 PF07317 Flagellar regulator YcgR CH48_RS13390 PF06165 Glycosyltransferase family 36 CH48_RS13390 PF10091 Putative glucoamylase CH48_RS13390 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH48_RS13405 PF08241 Methyltransferase domain CH48_RS13425 PF00593 TonB dependent receptor CH48_RS13425 PF07715 TonB-dependent Receptor Plug Domain CH48_RS13430 PF01202 Shikimate kinase CH48_RS13435 PF06865 Pyrimidine/purine nucleoside phosphorylase CH48_RS13440 PF04381 Putative exonuclease, RdgC CH48_RS13445 PF00480 ROK family CH48_RS13450 PF13476 AAA domain CH48_RS13455 PF12320 Type 5 capsule protein repressor C-terminal domain CH48_RS13455 PF00149 Calcineurin-like phosphoesterase CH48_RS13460 PF00072 Response regulator receiver domain CH48_RS13460 PF00486 Transcriptional regulatory protein, C terminal CH48_RS13465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS13465 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS13465 PF00989 PAS fold CH48_RS13465 PF11808 Phosphate regulon sensor protein PhoR CH48_RS13470 PF12849 PBP superfamily domain CH48_RS13475 PF05525 Branched-chain amino acid transport protein CH48_RS13480 PF00324 Amino acid permease CH48_RS13485 PF00128 Alpha amylase, catalytic domain CH48_RS13485 PF02903 Alpha amylase, N-terminal ig-like domain CH48_RS13500 PF01848 Hok/gef family CH48_RS13505 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH48_RS13505 PF00578 AhpC/TSA family CH48_RS13510 PF04336 Acyl carrier protein phosphodiesterase CH48_RS13515 PF02547 Queuosine biosynthesis protein CH48_RS13530 PF01702 Queuine tRNA-ribosyltransferase CH48_RS13535 PF02699 Preprotein translocase subunit CH48_RS13540 PF13721 SecD export protein N-terminal TM region CH48_RS13540 PF07549 SecD/SecF GG Motif CH48_RS13540 PF02355 Protein export membrane protein CH48_RS13545 PF02355 Protein export membrane protein CH48_RS13545 PF07549 SecD/SecF GG Motif CH48_RS13565 PF03477 ATP cone domain CH48_RS13570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH48_RS13570 PF01872 RibD C-terminal domain CH48_RS13575 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH48_RS13580 PF01029 NusB family CH48_RS13585 PF02769 AIR synthase related protein, C-terminal domain CH48_RS13585 PF00586 AIR synthase related protein, N-terminal domain CH48_RS13590 PF04608 Phosphatidylglycerophosphatase A CH48_RS13600 PF02780 Transketolase, C-terminal domain CH48_RS13600 PF02779 Transketolase, pyrimidine binding domain CH48_RS13600 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH48_RS13605 PF00348 Polyprenyl synthetase CH48_RS13610 PF02609 Exonuclease VII small subunit CH48_RS13615 PF02926 THUMP domain CH48_RS13615 PF02568 Thiamine biosynthesis protein (ThiI) CH48_RS13620 PF01965 DJ-1/PfpI family CH48_RS13625 PF02558 Ketopantoate reductase PanE/ApbA CH48_RS13625 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH48_RS13630 PF04461 Protein of unknown function (DUF520) CH48_RS13635 PF07690 Major Facilitator Superfamily CH48_RS13640 PF01040 UbiA prenyltransferase family CH48_RS13645 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH48_RS13650 PF00510 Cytochrome c oxidase subunit III CH48_RS13655 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH48_RS13660 PF06481 COX Aromatic Rich Motif CH48_RS13660 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH48_RS13665 PF03502 Nucleoside-specific channel-forming protein, Tsx CH48_RS13670 PF07690 Major Facilitator Superfamily CH48_RS13675 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH48_RS13675 PF03923 Uncharacterized lipoprotein CH48_RS13680 PF01722 BolA-like protein CH48_RS13690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH48_RS13690 PF05698 Bacterial trigger factor protein (TF) C-terminus CH48_RS13690 PF05697 Bacterial trigger factor protein (TF) CH48_RS13695 PF00574 Clp protease CH48_RS13700 PF06689 ClpX C4-type zinc finger CH48_RS13700 PF07724 AAA domain (Cdc48 subfamily) CH48_RS13700 PF10431 C-terminal, D2-small domain, of ClpB protein CH48_RS13705 PF05362 Lon protease (S16) C-terminal proteolytic domain CH48_RS13705 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH48_RS13705 PF00004 ATPase family associated with various cellular activities (AAA) CH48_RS13710 PF00216 Bacterial DNA-binding protein CH48_RS13715 PF13145 PPIC-type PPIASE domain CH48_RS13730 PF06508 Queuosine biosynthesis protein QueC CH48_RS13735 PF12793 Sugar transport-related sRNA regulator N-term CH48_RS13735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_RS13750 PF01037 Lrp/AsnC ligand binding domain CH48_RS13750 PF13404 AsnC-type helix-turn-helix domain CH48_RS13755 PF00664 ABC transporter transmembrane region CH48_RS13755 PF00005 ABC transporter CH48_RS13760 PF00664 ABC transporter transmembrane region CH48_RS13760 PF00005 ABC transporter CH48_RS13765 PF00543 Nitrogen regulatory protein P-II CH48_RS13770 PF00909 Ammonium Transporter Family CH48_RS13780 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH48_RS13785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH48_RS13790 PF05321 Haemolysin expression modulating protein CH48_RS13795 PF10757 Biofilm formation regulator YbaJ CH48_RS13805 PF00005 ABC transporter CH48_RS13810 PF00950 ABC 3 transport family CH48_RS13815 PF01297 Zinc-uptake complex component A periplasmic CH48_RS13820 PF00444 Ribosomal protein L36 CH48_RS13825 PF01197 Ribosomal protein L31 CH48_RS13835 PF10941 Protein of unknown function DUF2620 CH48_RS13840 PF01676 Metalloenzyme superfamily CH48_RS13845 PF01168 Alanine racemase, N-terminal domain CH48_RS13855 PF00873 AcrB/AcrD/AcrF family CH48_RS13860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_RS13860 PF00529 HlyD membrane-fusion protein of T1SS CH48_RS13865 PF08361 MAATS-type transcriptional repressor, C-terminal region CH48_RS13865 PF00440 Bacterial regulatory proteins, tetR family CH48_RS13870 PF02635 DsrE/DsrF-like family CH48_RS13875 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH48_RS13875 PF00924 Mechanosensitive ion channel CH48_RS13875 PF12795 Mechanosensitive ion channel porin domain CH48_RS13880 PF10689 Protein of unknown function (DUF2496) CH48_RS13890 PF04304 Protein of unknown function (DUF454) CH48_RS13895 PF00156 Phosphoribosyl transferase domain CH48_RS13900 PF12169 DNA polymerase III subunits gamma and tau domain III CH48_RS13900 PF12170 DNA polymerase III tau subunit V interacting with alpha CH48_RS13900 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH48_RS13905 PF02575 YbaB/EbfC DNA-binding family CH48_RS13910 PF02132 RecR protein CH48_RS13910 PF13662 Toprim domain CH48_RS13915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS13915 PF00183 Hsp90 protein CH48_RS13920 PF05191 Adenylate kinase, active site lid CH48_RS13925 PF00762 Ferrochelatase CH48_RS13930 PF01943 Polysaccharide biosynthesis protein CH48_RS13935 PF00535 Glycosyl transferase family 2 CH48_RS13935 PF01501 Glycosyl transferase family 8 CH48_RS13940 PF00535 Glycosyl transferase family 2 CH48_RS13945 PF00534 Glycosyl transferases group 1 CH48_RS13945 PF13439 Glycosyltransferase Family 4 CH48_RS13950 PF04101 Glycosyltransferase family 28 C-terminal domain CH48_RS13950 PF03033 Glycosyltransferase family 28 N-terminal domain CH48_RS13955 PF00953 Glycosyl transferase family 4 CH48_RS13960 PF02719 Polysaccharide biosynthesis protein CH48_RS13965 PF13439 Glycosyltransferase Family 4 CH48_RS13965 PF00534 Glycosyl transferases group 1 CH48_RS13970 PF16363 GDP-mannose 4,6 dehydratase CH48_RS13975 PF00294 pfkB family carbohydrate kinase CH48_RS13980 PF02254 TrkA-N domain CH48_RS13980 PF00999 Sodium/hydrogen exchanger family CH48_RS13985 PF07690 Major Facilitator Superfamily CH48_RS13990 PF02872 5'-nucleotidase, C-terminal domain CH48_RS13990 PF00149 Calcineurin-like phosphoesterase CH48_RS14000 PF04073 Aminoacyl-tRNA editing domain CH48_RS14005 PF01963 TraB family CH48_RS14010 PF00403 Heavy-metal-associated domain CH48_RS14015 PF13411 MerR HTH family regulatory protein CH48_RS14020 PF01957 NfeD-like C-terminal, partner-binding CH48_RS14025 PF01145 SPFH domain / Band 7 family CH48_RS14025 PF16200 C-terminal region of band_7 CH48_RS14030 PF00085 Thioredoxin CH48_RS14035 PF00106 short chain dehydrogenase CH48_RS14040 PF13472 GDSL-like Lipase/Acylhydrolase family CH48_RS14045 PF00005 ABC transporter CH48_RS14055 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH48_RS14055 PF02222 ATP-grasp domain CH48_RS14060 PF00731 AIR carboxylase CH48_RS14065 PF00149 Calcineurin-like phosphoesterase CH48_RS14070 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH48_RS14075 PF01406 tRNA synthetases class I (C) catalytic domain CH48_RS14075 PF09190 DALR domain CH48_RS14085 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH48_RS14085 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH48_RS14095 PF00589 Phage integrase family CH48_RS14100 PF01695 IstB-like ATP binding protein CH48_RS14105 PF00665 Integrase core domain CH48_RS14120 PF00072 Response regulator receiver domain CH48_RS14120 PF00486 Transcriptional regulatory protein, C terminal CH48_RS14140 PF08007 Cupin superfamily protein CH48_RS14145 PF00221 Aromatic amino acid lyase CH48_RS14150 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH48_RS14155 PF00664 ABC transporter transmembrane region CH48_RS14155 PF00005 ABC transporter CH48_RS14170 PF00149 Calcineurin-like phosphoesterase CH48_RS14180 PF00196 Bacterial regulatory proteins, luxR family CH48_RS14185 PF00313 'Cold-shock' DNA-binding domain CH48_RS14190 PF00313 'Cold-shock' DNA-binding domain CH48_RS14195 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH48_RS14200 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS14200 PF05230 MASE2 domain CH48_RS14205 PF02416 mttA/Hcf106 family CH48_RS14210 PF04055 Radical SAM superfamily CH48_RS14210 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH48_RS14215 PF03099 Biotin/lipoate A/B protein ligase family CH48_RS14220 PF04359 Protein of unknown function (DUF493) CH48_RS14225 PF07943 Penicillin-binding protein 5, C-terminal domain CH48_RS14225 PF00768 D-alanyl-D-alanine carboxypeptidase CH48_RS14230 PF03330 Lytic transglycolase CH48_RS14230 PF05036 Sporulation related domain CH48_RS14235 PF01098 Cell cycle protein CH48_RS14240 PF00905 Penicillin binding protein transpeptidase domain CH48_RS14240 PF03717 Penicillin-binding Protein dimerisation domain CH48_RS14245 PF02590 Predicted SPOUT methyltransferase CH48_RS14255 PF01467 Cytidylyltransferase-like CH48_RS14260 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH48_RS14260 PF06144 DNA polymerase III, delta subunit CH48_RS14265 PF04390 Lipopolysaccharide-assembly CH48_RS14270 PF08264 Anticodon-binding domain of tRNA CH48_RS14270 PF13603 Leucyl-tRNA synthetase, Domain 2 CH48_RS14270 PF00133 tRNA synthetases class I (I, L, M and V) CH48_RS14275 PF07295 Zinc-ribbon containing domain CH48_RS14280 PF00005 ABC transporter CH48_RS14285 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS14290 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS14295 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS14305 PF00795 Carbon-nitrogen hydrolase CH48_RS14310 PF00571 CBS domain CH48_RS14310 PF03471 Transporter associated domain CH48_RS14315 PF02130 Uncharacterized protein family UPF0054 CH48_RS14320 PF02562 PhoH-like protein CH48_RS14325 PF04055 Radical SAM superfamily CH48_RS14325 PF00919 Uncharacterized protein family UPF0004 CH48_RS14325 PF01938 TRAM domain CH48_RS14330 PF01494 FAD binding domain CH48_RS14365 PF13537 Glutamine amidotransferase domain CH48_RS14365 PF00733 Asparagine synthase CH48_RS14370 PF13344 Haloacid dehalogenase-like hydrolase CH48_RS14375 PF01047 MarR family CH48_RS14375 PF00480 ROK family CH48_RS14380 PF01979 Amidohydrolase family CH48_RS14385 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH48_RS14390 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH48_RS14390 PF02378 Phosphotransferase system, EIIC CH48_RS14390 PF00367 phosphotransferase system, EIIB CH48_RS14395 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH48_RS14395 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH48_RS14400 PF03573 outer membrane porin, OprD family CH48_RS14405 PF13982 YbfN-like lipoprotein CH48_RS14410 PF02838 Glycosyl hydrolase family 20, domain 2 CH48_RS14410 PF00728 Glycosyl hydrolase family 20, catalytic domain CH48_RS14410 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH48_RS14410 PF03173 Putative carbohydrate binding domain CH48_RS14415 PF01475 Ferric uptake regulator family CH48_RS14420 PF00258 Flavodoxin CH48_RS14425 PF02203 Tar ligand binding domain homologue CH48_RS14425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_RS14425 PF00672 HAMP domain CH48_RS14430 PF01402 Ribbon-helix-helix protein, copG family CH48_RS14435 PF12697 Alpha/beta hydrolase family CH48_RS14440 PF17206 SeqA protein N-terminal domain CH48_RS14440 PF03925 SeqA protein C-terminal domain CH48_RS14445 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH48_RS14445 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH48_RS14445 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH48_RS14445 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH48_RS14455 PF00892 EamA-like transporter family CH48_RS14460 PF00072 Response regulator receiver domain CH48_RS14460 PF00486 Transcriptional regulatory protein, C terminal CH48_RS14465 PF13492 GAF domain CH48_RS14465 PF13493 Domain of unknown function (DUF4118) CH48_RS14465 PF02702 Osmosensitive K+ channel His kinase sensor domain CH48_RS14465 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS14465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS14470 PF02669 K+-transporting ATPase, c chain CH48_RS14480 PF03814 Potassium-transporting ATPase A subunit CH48_RS14485 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) CH48_RS14490 PF10725 Protein of unknown function (DUF2517) CH48_RS14500 PF02794 RTX toxin acyltransferase family CH48_RS14505 PF11647 Membrane Localization Domain CH48_RS14505 PF07634 RtxA repeat CH48_RS14505 PF11713 Peptidase C80 family CH48_RS14505 PF11713 Peptidase C80 family CH48_RS14505 PF12146 Serine aminopeptidase, S33 CH48_RS14505 PF16671 Actin cross-linking domain CH48_RS14505 PF11647 Membrane Localization Domain CH48_RS14505 PF07634 RtxA repeat CH48_RS14505 PF12146 Serine aminopeptidase, S33 CH48_RS14505 PF16671 Actin cross-linking domain CH48_RS14510 PF08349 Protein of unknown function (DUF1722) CH48_RS14515 PF03441 FAD binding domain of DNA photolyase CH48_RS14515 PF00875 DNA photolyase CH48_RS14520 PF02112 cAMP phosphodiesterases class-II CH48_RS14525 PF01784 NIF3 (NGG1p interacting factor 3) CH48_RS14530 PF02682 Carboxyltransferase domain, subdomain C and D CH48_RS14535 PF02626 Carboxyltransferase domain, subdomain A and B CH48_RS14540 PF03746 LamB/YcsF family CH48_RS14555 PF01470 Pyroglutamyl peptidase CH48_RS14560 PF00285 Citrate synthase, C-terminal domain CH48_RS14565 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH48_RS14570 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH48_RS14575 PF00890 FAD binding domain CH48_RS14575 PF02910 Fumarate reductase flavoprotein C-term CH48_RS14580 PF13085 2Fe-2S iron-sulfur cluster binding domain CH48_RS14585 PF16078 2-oxoglutarate dehydrogenase N-terminus CH48_RS14585 PF16870 2-oxoglutarate dehydrogenase C-terminal CH48_RS14585 PF00676 Dehydrogenase E1 component CH48_RS14585 PF02779 Transketolase, pyrimidine binding domain CH48_RS14590 PF02817 e3 binding domain CH48_RS14590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH48_RS14590 PF00364 Biotin-requiring enzyme CH48_RS14595 PF00549 CoA-ligase CH48_RS14595 PF08442 ATP-grasp domain CH48_RS14600 PF00549 CoA-ligase CH48_RS14600 PF02629 CoA binding domain CH48_RS14610 PF02872 5'-nucleotidase, C-terminal domain CH48_RS14610 PF00149 Calcineurin-like phosphoesterase CH48_RS14615 PF01654 Cytochrome bd terminal oxidase subunit I CH48_RS14620 PF02322 Cytochrome bd terminal oxidase subunit II CH48_RS14625 PF08173 Membrane bound YbgT-like protein CH48_RS14630 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH48_RS14635 PF03061 Thioesterase superfamily CH48_RS14640 PF01618 MotA/TolQ/ExbB proton channel family CH48_RS14645 PF02472 Biopolymer transport protein ExbD/TolR CH48_RS14650 PF06519 TolA C-terminal CH48_RS14650 PF06519 TolA C-terminal CH48_RS14655 PF04052 TolB amino-terminal domain CH48_RS14655 PF07676 WD40-like Beta Propeller Repeat CH48_RS14660 PF00691 OmpA family CH48_RS14665 PF13174 Tetratricopeptide repeat CH48_RS14665 PF16331 TolA binding protein trimerisation CH48_RS14690 PF02445 Quinolinate synthetase A protein CH48_RS14695 PF04973 Nicotinamide mononucleotide transporter CH48_RS14700 PF01545 Cation efflux family CH48_RS14705 PF00793 DAHP synthetase I family CH48_RS14710 PF00300 Histidine phosphatase superfamily (branch 1) CH48_RS14715 PF01223 DNA/RNA non-specific endonuclease CH48_RS14725 PF00082 Subtilase family CH48_RS14735 PF01263 Aldose 1-epimerase CH48_RS14740 PF00288 GHMP kinases N terminal domain CH48_RS14740 PF08544 GHMP kinases C terminal CH48_RS14740 PF10509 Galactokinase galactose-binding signature CH48_RS14745 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH48_RS14745 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH48_RS14750 PF16363 GDP-mannose 4,6 dehydratase CH48_RS14760 PF00005 ABC transporter CH48_RS14765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS14765 PF03459 TOBE domain CH48_RS14770 PF10766 Multidrug efflux pump-associated protein AcrZ CH48_RS14780 PF13356 Arm DNA-binding domain CH48_RS14780 PF00589 Phage integrase family CH48_RS14960 PF00959 Phage lysozyme CH48_RS14970 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS14975 PF03459 TOBE domain CH48_RS14975 PF00005 ABC transporter CH48_RS14985 PF10282 Lactonase, 7-bladed beta-propeller CH48_RS14990 PF00202 Aminotransferase class-III CH48_RS14995 PF06968 Biotin and Thiamin Synthesis associated domain CH48_RS14995 PF04055 Radical SAM superfamily CH48_RS15000 PF00155 Aminotransferase class I and II CH48_RS15005 PF08241 Methyltransferase domain CH48_RS15015 PF00005 ABC transporter CH48_RS15020 PF04851 Type III restriction enzyme, res subunit CH48_RS15020 PF02151 UvrB/uvrC motif CH48_RS15020 PF00271 Helicase conserved C-terminal domain CH48_RS15020 PF17757 UvrB interaction domain CH48_RS15020 PF12344 Ultra-violet resistance protein B CH48_RS15025 PF09905 DNA-binding protein VF530 CH48_RS15030 PF01933 Uncharacterised protein family UPF0052 CH48_RS15035 PF06463 Molybdenum Cofactor Synthesis C CH48_RS15035 PF04055 Radical SAM superfamily CH48_RS15040 PF01967 MoaC family CH48_RS15045 PF02597 ThiS family CH48_RS15050 PF02391 MoaE protein CH48_RS15055 PF01027 Inhibitor of apoptosis-promoting Bax1 CH48_RS15070 PF00005 ABC transporter CH48_RS15075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_RS15080 PF00440 Bacterial regulatory proteins, tetR family CH48_RS15080 PF09209 Tetracyclin repressor-like, C-terminal domain CH48_RS15085 PF00271 Helicase conserved C-terminal domain CH48_RS15085 PF00270 DEAD/DEAH box helicase CH48_RS15090 PF01207 Dihydrouridine synthase (Dus) CH48_RS15100 PF01769 Divalent cation transporter CH48_RS15100 PF03448 MgtE intracellular N domain CH48_RS15100 PF00571 CBS domain CH48_RS15110 PF00768 D-alanyl-D-alanine carboxypeptidase CH48_RS15115 PF01565 FAD binding domain CH48_RS15115 PF09330 D-lactate dehydrogenase, membrane binding CH48_RS15120 PF01928 CYTH domain CH48_RS15125 PF01844 HNH endonuclease CH48_RS15135 PF04226 Transglycosylase associated protein CH48_RS15140 PF00005 ABC transporter CH48_RS15150 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS15155 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS15160 PF07308 Protein of unknown function (DUF1456) CH48_RS15170 PF02653 Branched-chain amino acid transport system / permease component CH48_RS15175 PF02653 Branched-chain amino acid transport system / permease component CH48_RS15180 PF00005 ABC transporter CH48_RS15185 PF00005 ABC transporter CH48_RS15190 PF00581 Rhodanese-like domain CH48_RS15195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH48_RS15195 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH48_RS15205 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH48_RS15210 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS15215 PF00005 ABC transporter CH48_RS15220 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS15235 PF03466 LysR substrate binding domain CH48_RS15235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS15245 PF00892 EamA-like transporter family CH48_RS15255 PF00267 Gram-negative porin CH48_RS15260 PF06733 DEAD_2 CH48_RS15260 PF13307 Helicase C-terminal domain CH48_RS15265 PF00230 Major intrinsic protein CH48_RS15270 PF02885 Glycosyl transferase family, helical bundle domain CH48_RS15290 PF05971 RNA methyltransferase CH48_RS15295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_RS15295 PF13426 PAS domain CH48_RS15295 PF08447 PAS fold CH48_RS15300 PF00005 ABC transporter CH48_RS15305 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS15310 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS15315 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH48_RS15320 PF00210 Ferritin-like domain CH48_RS15325 PF13847 Methyltransferase domain CH48_RS15340 PF02469 Fasciclin domain CH48_RS15350 PF00892 EamA-like transporter family CH48_RS15360 PF13505 Outer membrane protein beta-barrel domain CH48_RS15380 PF12848 ABC transporter CH48_RS15380 PF00005 ABC transporter CH48_RS15390 PF00899 ThiF family CH48_RS15395 PF03453 MoeA N-terminal region (domain I and II) CH48_RS15395 PF00994 Probable molybdopterin binding domain CH48_RS15395 PF03454 MoeA C-terminal region (domain IV) CH48_RS15410 PF00005 ABC transporter CH48_RS15410 PF02687 FtsX-like permease family CH48_RS15410 PF12704 MacB-like periplasmic core domain CH48_RS15430 PF00756 Putative esterase CH48_RS15435 PF00107 Zinc-binding dehydrogenase CH48_RS15435 PF08240 Alcohol dehydrogenase GroES-like domain CH48_RS15440 PF03466 LysR substrate binding domain CH48_RS15440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS15445 PF06779 Uncharacterised MFS-type transporter YbfB CH48_RS15450 PF01227 GTP cyclohydrolase I CH48_RS15455 PF04235 Protein of unknown function (DUF418) CH48_RS15460 PF00356 Bacterial regulatory proteins, lacI family CH48_RS15465 PF13407 Periplasmic binding protein domain CH48_RS15470 PF00005 ABC transporter CH48_RS15475 PF02653 Branched-chain amino acid transport system / permease component CH48_RS15480 PF00158 Sigma-54 interaction domain CH48_RS15480 PF01590 GAF domain CH48_RS15485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS15485 PF00384 Molybdopterin oxidoreductase CH48_RS15485 PF01568 Molydopterin dinucleotide binding domain CH48_RS15490 PF12800 4Fe-4S binding domain CH48_RS15490 PF13247 4Fe-4S dicluster domain CH48_RS15495 PF01750 Hydrogenase maturation protease CH48_RS15500 PF07450 Formate hydrogenlyase maturation protein HycH CH48_RS15505 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH48_RS15510 PF12838 4Fe-4S dicluster domain CH48_RS15515 PF00374 Nickel-dependent hydrogenase CH48_RS15515 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH48_RS15515 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH48_RS15520 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH48_RS15520 PF00361 Proton-conducting membrane transporter CH48_RS15525 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH48_RS15530 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH48_RS15530 PF00361 Proton-conducting membrane transporter CH48_RS15535 PF00146 NADH dehydrogenase CH48_RS15540 PF00361 Proton-conducting membrane transporter CH48_RS15545 PF00037 4Fe-4S binding domain CH48_RS15545 PF12798 4Fe-4S binding domain CH48_RS15550 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH48_RS15555 PF01455 HupF/HypC family CH48_RS15560 PF02698 DUF218 domain CH48_RS15565 PF00390 Malic enzyme, N-terminal domain CH48_RS15565 PF03949 Malic enzyme, NAD binding domain CH48_RS15575 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH48_RS15575 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH48_RS15580 PF04172 LrgB-like family CH48_RS15585 PF03788 LrgA family CH48_RS15590 PF07690 Major Facilitator Superfamily CH48_RS15610 PF09334 tRNA synthetases class I (M) CH48_RS15610 PF01588 Putative tRNA binding domain CH48_RS15615 PF10609 NUBPL iron-transfer P-loop NTPase CH48_RS15620 PF00485 Phosphoribulokinase / Uridine kinase family CH48_RS15625 PF00692 dUTPase CH48_RS15630 PF05170 AsmA family CH48_RS15635 PF03606 C4-dicarboxylate anaerobic carrier CH48_RS15640 PF03741 Integral membrane protein TerC family CH48_RS15640 PF00571 CBS domain CH48_RS15640 PF03471 Transporter associated domain CH48_RS15645 PF00483 Nucleotidyl transferase CH48_RS15645 PF01050 Mannose-6-phosphate isomerase CH48_RS15650 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH48_RS15650 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH48_RS15650 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH48_RS15650 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH48_RS15655 PF00483 Nucleotidyl transferase CH48_RS15660 PF00483 Nucleotidyl transferase CH48_RS15665 PF16363 GDP-mannose 4,6 dehydratase CH48_RS15670 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH48_RS15680 PF00005 ABC transporter CH48_RS15695 PF00551 Formyl transferase CH48_RS15695 PF02911 Formyl transferase, C-terminal domain CH48_RS15700 PF13439 Glycosyltransferase Family 4 CH48_RS15700 PF00534 Glycosyl transferases group 1 CH48_RS15705 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH48_RS15705 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH48_RS15710 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH48_RS15710 PF01502 Phosphoribosyl-AMP cyclohydrolase CH48_RS15715 PF00977 Histidine biosynthesis protein CH48_RS15720 PF00977 Histidine biosynthesis protein CH48_RS15725 PF00117 Glutamine amidotransferase class-I CH48_RS15730 PF00475 Imidazoleglycerol-phosphate dehydratase CH48_RS15735 PF00155 Aminotransferase class I and II CH48_RS15740 PF00815 Histidinol dehydrogenase CH48_RS15745 PF01634 ATP phosphoribosyltransferase CH48_RS15745 PF08029 HisG, C-terminal domain CH48_RS15750 PF01370 NAD dependent epimerase/dehydratase family CH48_RS15760 PF02653 Branched-chain amino acid transport system / permease component CH48_RS15765 PF00005 ABC transporter CH48_RS15780 PF13520 Amino acid permease CH48_RS15785 PF08411 Exonuclease C-terminal CH48_RS15785 PF00929 Exonuclease CH48_RS15790 PF07993 Male sterility protein CH48_RS15790 PF00501 AMP-binding enzyme CH48_RS15790 PF00550 Phosphopantetheine attachment site CH48_RS15795 PF04632 Fusaric acid resistance protein family CH48_RS15800 PF04363 Protein of unknown function (DUF496) CH48_RS15805 PF02653 Branched-chain amino acid transport system / permease component CH48_RS15810 PF02653 Branched-chain amino acid transport system / permease component CH48_RS15815 PF00005 ABC transporter CH48_RS15820 PF13407 Periplasmic binding protein domain CH48_RS15825 PF00288 GHMP kinases N terminal domain CH48_RS15830 PF00155 Aminotransferase class I and II CH48_RS15835 PF10414 Sirohaem synthase dimerisation region CH48_RS15835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_RS15835 PF14824 Sirohaem biosynthesis protein central CH48_RS15840 PF00871 Acetokinase family CH48_RS15845 PF10662 Ethanolamine utilisation - propanediol utilisation CH48_RS15850 PF00936 BMC domain CH48_RS15860 PF13237 4Fe-4S dicluster domain CH48_RS15860 PF13375 RnfC Barrel sandwich hybrid domain CH48_RS15860 PF10531 SLBB domain CH48_RS15860 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH48_RS15865 PF00465 Iron-containing alcohol dehydrogenase CH48_RS15870 PF00171 Aldehyde dehydrogenase family CH48_RS15875 PF01923 Cobalamin adenosyltransferase CH48_RS15880 PF03319 Ethanolamine utilisation protein EutN/carboxysome CH48_RS15890 PF06130 Phosphate propanoyltransferase CH48_RS15900 PF00936 BMC domain CH48_RS15910 PF08841 Diol dehydratase reactivase ATPase-like domain CH48_RS15910 PF18427 DD-reactivating factor swiveling domain CH48_RS15915 PF02287 Dehydratase small subunit CH48_RS15920 PF02288 Dehydratase medium subunit CH48_RS15925 PF02286 Dehydratase large subunit CH48_RS15930 PF00936 BMC domain CH48_RS15935 PF00936 BMC domain CH48_RS15940 PF00230 Major intrinsic protein CH48_RS15945 PF12833 Helix-turn-helix domain CH48_RS15945 PF10114 Sensory domain found in PocR CH48_RS15950 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH48_RS15950 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH48_RS15955 PF03186 CobD/Cbib protein CH48_RS15960 PF02570 Precorrin-8X methylmutase CH48_RS15965 PF01888 CbiD CH48_RS15970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_RS15975 PF05175 Methyltransferase small domain CH48_RS15980 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_RS15985 PF11761 Cobalamin biosynthesis central region CH48_RS15985 PF11760 Cobalamin synthesis G N-terminal CH48_RS15985 PF01890 Cobalamin synthesis G C-terminus CH48_RS15990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_RS15995 PF02571 Precorrin-6x reductase CbiJ/CobK CH48_RS16000 PF06180 Cobalt chelatase (CbiK) CH48_RS16005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_RS16010 PF01891 Cobalt uptake substrate-specific transmembrane region CH48_RS16015 PF02553 Cobalt transport protein component CbiN CH48_RS16020 PF02361 Cobalt transport protein CH48_RS16025 PF00005 ABC transporter CH48_RS16030 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH48_RS16035 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CH48_RS16040 PF02654 Cobalamin-5-phosphate synthase CH48_RS16045 PF00300 Histidine phosphatase superfamily (branch 1) CH48_RS16050 PF02277 Phosphoribosyltransferase CH48_RS16105 PF05947 Type VI secretion system, TssF CH48_RS16110 PF10431 C-terminal, D2-small domain, of ClpB protein CH48_RS16110 PF00004 ATPase family associated with various cellular activities (AAA) CH48_RS16110 PF07724 AAA domain (Cdc48 subfamily) CH48_RS16110 PF17871 AAA lid domain CH48_RS16115 PF00419 Fimbrial protein CH48_RS16120 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_RS16120 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_RS16125 PF13954 PapC N-terminal domain CH48_RS16125 PF13953 PapC C-terminal domain CH48_RS16125 PF00577 Outer membrane usher protein CH48_RS16135 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 CH48_RS16140 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CH48_RS16155 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CH48_RS16165 PF14331 ImcF-related N-terminal domain CH48_RS16165 PF06761 Intracellular multiplication and human macrophage-killing CH48_RS16165 PF06744 Type VI secretion protein IcmF C-terminal CH48_RS16170 PF04717 Type VI secretion system, phage-baseplate injector CH48_RS16185 PF07024 ImpE protein CH48_RS16195 PF00764 Arginosuccinate synthase CH48_RS16200 PF01554 MatE CH48_RS16210 PF02581 Thiamine monophosphate synthase CH48_RS16220 PF00455 DeoR C terminal sensor domain CH48_RS16220 PF08220 DeoR-like helix-turn-helix domain CH48_RS16225 PF00144 Beta-lactamase CH48_RS16230 PF01584 CheW-like domain CH48_RS16230 PF00072 Response regulator receiver domain CH48_RS16250 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH48_RS16250 PF02558 Ketopantoate reductase PanE/ApbA CH48_RS16260 PF08402 TOBE domain CH48_RS16260 PF00005 ABC transporter CH48_RS16265 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS16275 PF07690 Major Facilitator Superfamily CH48_RS16280 PF05231 MASE1 CH48_RS16280 PF07730 Histidine kinase CH48_RS16280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS16285 PF00196 Bacterial regulatory proteins, luxR family CH48_RS16285 PF00072 Response regulator receiver domain CH48_RS16290 PF12431 Transcriptional regulator CH48_RS16290 PF00072 Response regulator receiver domain CH48_RS16295 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH48_RS16295 PF17203 Single cache domain 3 CH48_RS16295 PF00989 PAS fold CH48_RS16295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS16305 PF06857 Malonate decarboxylase delta subunit (MdcD) CH48_RS16310 PF03328 HpcH/HpaI aldolase/citrate lyase family CH48_RS16315 PF04223 Citrate lyase, alpha subunit (CitF) CH48_RS16320 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH48_RS16320 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CH48_RS16325 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH48_RS16330 PF00939 Sodium:sulfate symporter transmembrane region CH48_RS16335 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH48_RS16345 PF03480 Bacterial extracellular solute-binding protein, family 7 CH48_RS16355 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH48_RS16355 PF01648 4'-phosphopantetheinyl transferase superfamily CH48_RS16365 PF00083 Sugar (and other) transporter CH48_RS16370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_RS16370 PF00381 PTS HPr component phosphorylation site CH48_RS16375 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH48_RS16380 PF00849 RNA pseudouridylate synthase CH48_RS16395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_RS16395 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_RS16405 PF13953 PapC C-terminal domain CH48_RS16405 PF13954 PapC N-terminal domain CH48_RS16405 PF00577 Outer membrane usher protein CH48_RS16410 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_RS16410 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_RS16420 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS16420 PF00072 Response regulator receiver domain CH48_RS16420 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS16420 PF01627 Hpt domain CH48_RS16420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS16420 PF00989 PAS fold CH48_RS16425 PF00072 Response regulator receiver domain CH48_RS16425 PF00196 Bacterial regulatory proteins, luxR family CH48_RS16435 PF06167 Glucose-regulated metallo-peptidase M90 CH48_RS16445 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH48_RS16445 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH48_RS16465 PF00577 Outer membrane usher protein CH48_RS16465 PF13954 PapC N-terminal domain CH48_RS16465 PF13953 PapC C-terminal domain CH48_RS16470 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_RS16485 PF00328 Histidine phosphatase superfamily (branch 2) CH48_RS16490 PF14001 YdfZ protein CH48_RS16505 PF10777 Inner membrane protein YlaC CH48_RS16510 PF08240 Alcohol dehydrogenase GroES-like domain CH48_RS16510 PF00107 Zinc-binding dehydrogenase CH48_RS16510 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_RS16510 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_RS16510 PF08659 KR domain CH48_RS16510 PF00550 Phosphopantetheine attachment site CH48_RS16510 PF14765 Polyketide synthase dehydratase CH48_RS16510 PF00698 Acyl transferase domain CH48_RS16510 PF16197 Ketoacyl-synthetase C-terminal extension CH48_RS16520 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH48_RS16520 PF02929 Beta galactosidase small chain CH48_RS16520 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH48_RS16520 PF00703 Glycosyl hydrolases family 2 CH48_RS16520 PF16353 Domain of unknown function(DUF4981) CH48_RS16525 PF00356 Bacterial regulatory proteins, lacI family CH48_RS16530 PF00313 'Cold-shock' DNA-binding domain CH48_RS16535 PF10781 Dextransucrase DSRB CH48_RS16540 PF02203 Tar ligand binding domain homologue CH48_RS16540 PF00672 HAMP domain CH48_RS16540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_RS16555 PF02308 MgtC family CH48_RS16560 PF00689 Cation transporting ATPase, C-terminus CH48_RS16560 PF00690 Cation transporter/ATPase, N-terminus CH48_RS16565 PF16884 N-terminal domain of oxidoreductase CH48_RS16565 PF00107 Zinc-binding dehydrogenase CH48_RS16570 PF00582 Universal stress protein family CH48_RS16575 PF05247 Flagellar transcriptional activator (FlhD) CH48_RS16580 PF05280 Flagellar transcriptional activator (FlhC) CH48_RS16585 PF01618 MotA/TolQ/ExbB proton channel family CH48_RS16590 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH48_RS16590 PF00691 OmpA family CH48_RS16595 PF02895 Signal transducing histidine kinase, homodimeric domain CH48_RS16595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS16595 PF09078 CheY binding CH48_RS16595 PF01584 CheW-like domain CH48_RS16595 PF01627 Hpt domain CH48_RS16600 PF01584 CheW-like domain CH48_RS16605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_RS16605 PF02203 Tar ligand binding domain homologue CH48_RS16605 PF00672 HAMP domain CH48_RS16610 PF00672 HAMP domain CH48_RS16610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_RS16610 PF02203 Tar ligand binding domain homologue CH48_RS16615 PF03705 CheR methyltransferase, all-alpha domain CH48_RS16615 PF01739 CheR methyltransferase, SAM binding domain CH48_RS16620 PF01339 CheB methylesterase CH48_RS16620 PF00072 Response regulator receiver domain CH48_RS16625 PF00072 Response regulator receiver domain CH48_RS16630 PF04344 Chemotaxis phosphatase, CheZ CH48_RS16635 PF00082 Subtilase family CH48_RS16635 PF01483 Proprotein convertase P-domain CH48_RS16640 PF01312 FlhB HrpN YscU SpaS Family CH48_RS16645 PF00771 FHIPEP family CH48_RS16650 PF06366 Flagellar protein FlhE CH48_RS16655 PF02369 Bacterial Ig-like domain (group 1) CH48_RS16655 PF11924 Inverse autotransporter, beta-domain CH48_RS16655 PF07979 Intimin C-type lectin domain CH48_RS16655 PF09134 Invasin, domain 3 CH48_RS16660 PF05130 FlgN protein CH48_RS16665 PF04316 Anti-sigma-28 factor, FlgM CH48_RS16670 PF13144 Chaperone for flagella basal body P-ring formation CH48_RS16670 PF17656 FlgA N-terminal domain CH48_RS16675 PF00460 Flagella basal body rod protein CH48_RS16680 PF00460 Flagella basal body rod protein CH48_RS16680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_RS16685 PF03963 Flagellar hook capping protein - N-terminal region CH48_RS16685 PF13860 FlgD Ig-like domain CH48_RS16685 PF13861 FlgD Tudor-like domain CH48_RS16690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_RS16690 PF00460 Flagella basal body rod protein CH48_RS16690 PF07559 Flagellar basal body protein FlaE CH48_RS16695 PF00460 Flagella basal body rod protein CH48_RS16695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_RS16700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_RS16700 PF00460 Flagella basal body rod protein CH48_RS16705 PF02107 Flagellar L-ring protein CH48_RS16710 PF02119 Flagellar P-ring protein CH48_RS16715 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH48_RS16715 PF10135 Rod binding protein CH48_RS16720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_RS16720 PF00460 Flagella basal body rod protein CH48_RS16725 PF00669 Bacterial flagellin N-terminal helical region CH48_RS16730 PF01311 Bacterial export proteins, family 1 CH48_RS16735 PF01313 Bacterial export proteins, family 3 CH48_RS16740 PF00813 FliP family CH48_RS16745 PF04347 Flagellar biosynthesis protein, FliO CH48_RS16750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH48_RS16750 PF16973 Flagellar motor switch protein FliN N-terminal CH48_RS16755 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH48_RS16755 PF02154 Flagellar motor switch protein FliM CH48_RS16760 PF03748 Flagellar basal body-associated protein FliL CH48_RS16765 PF02120 Flagellar hook-length control protein FliK CH48_RS16770 PF02050 Flagellar FliJ protein CH48_RS16775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_RS16775 PF18269 T3SS EscN ATPase C-terminal domain CH48_RS16780 PF02108 Flagellar assembly protein FliH CH48_RS16785 PF01706 FliG C-terminal domain CH48_RS16785 PF14842 FliG N-terminal domain CH48_RS16785 PF14841 FliG middle domain CH48_RS16790 PF08345 Flagellar M-ring protein C-terminal CH48_RS16790 PF01514 Secretory protein of YscJ/FliF family CH48_RS16795 PF02049 Flagellar hook-basal body complex protein FliE CH48_RS16820 PF06183 DinI-like family CH48_RS16830 PF00730 HhH-GPD superfamily base excision DNA repair protein CH48_RS16835 PF01966 HD domain CH48_RS16840 PF12833 Helix-turn-helix domain CH48_RS16845 PF05400 Flagellar protein FliT CH48_RS16850 PF02561 Flagellar protein FliS CH48_RS16855 PF02465 Flagellar hook-associated protein 2 N-terminus CH48_RS16855 PF07195 Flagellar hook-associated protein 2 C-terminus CH48_RS16855 PF07196 Flagellin hook IN motif CH48_RS16860 PF00700 Bacterial flagellin C-terminal helical region CH48_RS16860 PF08884 Flagellin D3 domain CH48_RS16860 PF00669 Bacterial flagellin N-terminal helical region CH48_RS16865 PF08884 Flagellin D3 domain CH48_RS16865 PF00669 Bacterial flagellin N-terminal helical region CH48_RS16865 PF00700 Bacterial flagellin C-terminal helical region CH48_RS16870 PF00700 Bacterial flagellin C-terminal helical region CH48_RS16870 PF08884 Flagellin D3 domain CH48_RS16870 PF00669 Bacterial flagellin N-terminal helical region CH48_RS16880 PF04539 Sigma-70 region 3 CH48_RS16880 PF04542 Sigma-70 region 2 CH48_RS16880 PF04545 Sigma-70, region 4 CH48_RS16885 PF02899 Phage integrase, N-terminal SAM-like domain CH48_RS16890 PF00291 Pyridoxal-phosphate dependent enzyme CH48_RS16895 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS16900 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS16905 PF00005 ABC transporter CH48_RS16920 PF00171 Aldehyde dehydrogenase family CH48_RS16920 PF01619 Proline dehydrogenase CH48_RS16920 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH48_RS16920 PF14850 DNA-binding domain of Proline dehydrogenase CH48_RS16925 PF00474 Sodium:solute symporter family CH48_RS16935 PF05638 Type VI secretion system effector, Hcp CH48_RS16945 PF03239 Iron permease FTR1 family CH48_RS16950 PF13473 Cupredoxin-like domain CH48_RS16950 PF09375 Imelysin CH48_RS16955 PF04261 Dyp-type peroxidase family CH48_RS16960 PF03358 NADPH-dependent FMN reductase CH48_RS16970 PF01344 Kelch motif CH48_RS16985 PF01613 Flavin reductase like domain CH48_RS16990 PF00881 Nitroreductase family CH48_RS16995 PF12697 Alpha/beta hydrolase family CH48_RS17000 PF01042 Endoribonuclease L-PSP CH48_RS17005 PF00857 Isochorismatase family CH48_RS17010 PF00296 Luciferase-like monooxygenase CH48_RS17015 PF08362 YcdC-like protein, C-terminal region CH48_RS17015 PF00440 Bacterial regulatory proteins, tetR family CH48_RS17020 PF00324 Amino acid permease CH48_RS17030 PF00589 Phage integrase family CH48_RS17035 PF01527 Transposase CH48_RS17045 PF08241 Methyltransferase domain CH48_RS17060 PF02806 Alpha amylase, C-terminal all-beta domain CH48_RS17060 PF00128 Alpha amylase, catalytic domain CH48_RS17070 PF06942 GlpM protein CH48_RS17075 PF10769 Protein of unknown function (DUF2594) CH48_RS17080 PF00072 Response regulator receiver domain CH48_RS17080 PF00196 Bacterial regulatory proteins, luxR family CH48_RS17085 PF08459 UvrC Helix-hairpin-helix N-terminal CH48_RS17085 PF01541 GIY-YIG catalytic domain CH48_RS17085 PF02151 UvrB/uvrC motif CH48_RS17090 PF01066 CDP-alcohol phosphatidyltransferase CH48_RS17110 PF04606 Ogr/Delta-like zinc finger CH48_RS17145 PF04984 Phage tail sheath protein subtilisin-like domain CH48_RS17145 PF17482 Phage tail sheath C-terminal domain CH48_RS17155 PF04754 Putative transposase, YhgA-like CH48_RS17175 PF04221 RelB antitoxin CH48_RS17180 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ CH48_RS17195 PF07484 Phage Tail Collar Domain CH48_RS17270 PF01527 Transposase CH48_RS17280 PF00872 Transposase, Mutator family CH48_RS17290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS17290 PF03466 LysR substrate binding domain CH48_RS17300 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_RS17310 PF06530 Phage antitermination protein Q CH48_RS17315 PF10753 Toxin GhoT_OrtT CH48_RS17325 PF00959 Phage lysozyme CH48_RS17330 PF00561 alpha/beta hydrolase fold CH48_RS17335 PF04391 Protein of unknown function (DUF533) CH48_RS17340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS17340 PF03466 LysR substrate binding domain CH48_RS17345 PF00144 Beta-lactamase CH48_RS17350 PF01926 50S ribosome-binding GTPase CH48_RS17350 PF06071 Protein of unknown function (DUF933) CH48_RS17360 PF01195 Peptidyl-tRNA hydrolase CH48_RS17365 PF10762 Protein of unknown function (DUF2583) CH48_RS17375 PF14572 Phosphoribosyl synthetase-associated domain CH48_RS17375 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH48_RS17380 PF00288 GHMP kinases N terminal domain CH48_RS17380 PF08544 GHMP kinases C terminal CH48_RS17385 PF03550 Outer membrane lipoprotein LolB CH48_RS17390 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH48_RS17390 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH48_RS17390 PF01488 Shikimate / quinate 5-dehydrogenase CH48_RS17395 PF00472 RF-1 domain CH48_RS17395 PF03462 PCRF domain CH48_RS17400 PF13847 Methyltransferase domain CH48_RS17400 PF17827 PrmC N-terminal domain CH48_RS17405 PF04247 Invasion gene expression up-regulator, SirB CH48_RS17410 PF13369 Transglutaminase-like superfamily CH48_RS17415 PF00793 DAHP synthetase I family CH48_RS17425 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS17435 PF03009 Glycerophosphoryl diester phosphodiesterase family CH48_RS17445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_RS17450 PF02811 PHP domain CH48_RS17455 PF02613 Nitrate reductase delta subunit CH48_RS17460 PF07273 Protein of unknown function (DUF1439) CH48_RS17465 PF07690 Major Facilitator Superfamily CH48_RS17480 PF13302 Acetyltransferase (GNAT) domain CH48_RS17485 PF04337 Protein of unknown function, DUF480 CH48_RS17490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH48_RS17495 PF03023 Lipid II flippase MurJ CH48_RS17500 PF01699 Sodium/calcium exchanger protein CH48_RS17515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS17515 PF03466 LysR substrate binding domain CH48_RS17520 PF07730 Histidine kinase CH48_RS17520 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH48_RS17520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS17520 PF00672 HAMP domain CH48_RS17525 PF02322 Cytochrome bd terminal oxidase subunit II CH48_RS17530 PF01654 Cytochrome bd terminal oxidase subunit I CH48_RS17535 PF00392 Bacterial regulatory proteins, gntR family CH48_RS17535 PF00155 Aminotransferase class I and II CH48_RS17540 PF00202 Aminotransferase class-III CH48_RS17545 PF04958 Arginine N-succinyltransferase beta subunit CH48_RS17550 PF00171 Aldehyde dehydrogenase family CH48_RS17555 PF04996 Succinylarginine dihydrolase CH48_RS17560 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH48_RS17565 PF00267 Gram-negative porin CH48_RS17570 PF13276 HTH-like domain CH48_RS17570 PF00665 Integrase core domain CH48_RS17570 PF13333 Integrase core domain CH48_RS17590 PF01979 Amidohydrolase family CH48_RS17595 PF07702 UTRA domain CH48_RS17595 PF00392 Bacterial regulatory proteins, gntR family CH48_RS17600 PF01979 Amidohydrolase family CH48_RS17605 PF05962 HutD CH48_RS17610 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CH48_RS17635 PF01476 LysM domain CH48_RS17635 PF01551 Peptidase family M23 CH48_RS17640 PF01116 Fructose-bisphosphate aldolase class-II CH48_RS17645 PF01380 SIS domain CH48_RS17650 PF03610 PTS system fructose IIA component CH48_RS17655 PF03613 PTS system mannose/fructose/sorbose family IID component CH48_RS17660 PF03609 PTS system sorbose-specific iic component CH48_RS17665 PF03830 PTS system sorbose subfamily IIB component CH48_RS17670 PF08013 Tagatose 6 phosphate kinase CH48_RS17675 PF08220 DeoR-like helix-turn-helix domain CH48_RS17675 PF00455 DeoR C terminal sensor domain CH48_RS17695 PF01479 S4 domain CH48_RS17695 PF00849 RNA pseudouridylate synthase CH48_RS17700 PF03616 Sodium/glutamate symporter CH48_RS17710 PF02371 Transposase IS116/IS110/IS902 family CH48_RS17710 PF01548 Transposase CH48_RS17715 PF02371 Transposase IS116/IS110/IS902 family CH48_RS17715 PF01548 Transposase CH48_RS17720 PF08003 Protein of unknown function (DUF1698) CH48_RS17725 PF13649 Methyltransferase domain CH48_RS17730 PF01124 MAPEG family CH48_RS17735 PF01904 Protein of unknown function DUF72 CH48_RS17740 PF00857 Isochorismatase family CH48_RS17750 PF02938 GAD domain CH48_RS17750 PF00152 tRNA synthetases class II (D, K and N) CH48_RS17750 PF01336 OB-fold nucleic acid binding domain CH48_RS17755 PF00293 NUDIX domain CH48_RS17760 PF01709 Transcriptional regulator CH48_RS17765 PF02075 Crossover junction endodeoxyribonuclease RuvC CH48_RS17770 PF07499 RuvA, C-terminal domain CH48_RS17770 PF01330 RuvA N terminal domain CH48_RS17775 PF17864 RuvB AAA lid domain CH48_RS17775 PF05491 RuvB C-terminal winged helix domain CH48_RS17775 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH48_RS17780 PF00854 POT family CH48_RS17785 PF00950 ABC 3 transport family CH48_RS17790 PF00005 ABC transporter CH48_RS17795 PF01297 Zinc-uptake complex component A periplasmic CH48_RS17800 PF01476 LysM domain CH48_RS17800 PF08525 Opacity-associated protein A N-terminal motif CH48_RS17800 PF01551 Peptidase family M23 CH48_RS17805 PF03279 Bacterial lipid A biosynthesis acyltransferase CH48_RS17815 PF00872 Transposase, Mutator family CH48_RS17820 PF00224 Pyruvate kinase, barrel domain CH48_RS17820 PF02887 Pyruvate kinase, alpha/beta domain CH48_RS17825 PF01418 Helix-turn-helix domain, rpiR family CH48_RS17825 PF01380 SIS domain CH48_RS17830 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH48_RS17830 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH48_RS17835 PF01081 KDPG and KHG aldolase CH48_RS17840 PF00893 Small Multidrug Resistance protein CH48_RS17845 PF00893 Small Multidrug Resistance protein CH48_RS17850 PF01042 Endoribonuclease L-PSP CH48_RS17855 PF13307 Helicase C-terminal domain CH48_RS17855 PF04851 Type III restriction enzyme, res subunit CH48_RS17860 PF00814 Glycoprotease family CH48_RS17865 PF03843 Outer membrane lipoprotein Slp family CH48_RS17870 PF13193 AMP-binding enzyme C-terminal domain CH48_RS17870 PF00501 AMP-binding enzyme CH48_RS17875 PF01612 3'-5' exonuclease CH48_RS17875 PF00570 HRDC domain CH48_RS17880 PF03776 Septum formation topological specificity factor MinE CH48_RS17885 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH48_RS17890 PF03775 Septum formation inhibitor MinC, C-terminal domain CH48_RS17890 PF05209 Septum formation inhibitor MinC, N-terminal domain CH48_RS17900 PF05166 YcgL domain CH48_RS17905 PF13406 Transglycosylase SLT domain CH48_RS17910 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH48_RS17915 PF03692 Putative zinc- or iron-chelating domain CH48_RS17940 PF00924 Mechanosensitive ion channel CH48_RS17945 PF14834 Glutathione S-transferase, C-terminal domain CH48_RS17945 PF02798 Glutathione S-transferase, N-terminal domain CH48_RS17965 PF07351 Protein of unknown function (DUF1480) CH48_RS17970 PF00563 EAL domain CH48_RS17970 PF00360 Phytochrome region CH48_RS17970 PF01590 GAF domain CH48_RS17970 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS18005 PF07690 Major Facilitator Superfamily CH48_RS18010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS18010 PF03466 LysR substrate binding domain CH48_RS18015 PF02470 MlaD protein CH48_RS18020 PF04403 Paraquat-inducible protein A CH48_RS18025 PF13185 GAF domain CH48_RS18030 PF04352 ProQ/FINO family CH48_RS18030 PF17516 ProQ C-terminal domain CH48_RS18035 PF03572 Peptidase family S41 CH48_RS18035 PF17804 Tail specific protease N-terminal domain CH48_RS18035 PF00595 PDZ domain CH48_RS18035 PF11818 C-terminal domain of tail specific protease (DUF3340) CH48_RS18040 PF01435 Peptidase family M48 CH48_RS18050 PF07690 Major Facilitator Superfamily CH48_RS18055 PF14583 Oligogalacturonate lyase CH48_RS18060 PF01614 Bacterial transcriptional regulator CH48_RS18060 PF09339 IclR helix-turn-helix domain CH48_RS18065 PF01510 N-acetylmuramoyl-L-alanine amidase CH48_RS18070 PF00375 Sodium:dicarboxylate symporter family CH48_RS18075 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH48_RS18085 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH48_RS18090 PF01547 Bacterial extracellular solute-binding protein CH48_RS18095 PF03459 TOBE domain CH48_RS18095 PF00005 ABC transporter CH48_RS18095 PF17912 MalK OB fold domain CH48_RS18100 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS18105 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS18110 PF06917 Periplasmic pectate lyase CH48_RS18120 PF04962 KduI/IolB family CH48_RS18125 PF07883 Cupin domain CH48_RS18130 PF13419 Haloacid dehalogenase-like hydrolase CH48_RS18135 PF14002 YniB-like protein CH48_RS18140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS18140 PF03466 LysR substrate binding domain CH48_RS18145 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH48_RS18145 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH48_RS18150 PF00378 Enoyl-CoA hydratase/isomerase CH48_RS18160 PF02310 B12 binding domain CH48_RS18160 PF01642 Methylmalonyl-CoA mutase CH48_RS18165 PF03881 Fructosamine kinase CH48_RS18170 PF00950 ABC 3 transport family CH48_RS18175 PF00950 ABC 3 transport family CH48_RS18180 PF00005 ABC transporter CH48_RS18185 PF01297 Zinc-uptake complex component A periplasmic CH48_RS18190 PF01464 Transglycosylase SLT domain CH48_RS18195 PF01914 MarC family integral membrane protein CH48_RS18220 PF04474 Protein of unknown function (DUF554) CH48_RS18225 PF13619 KTSC domain CH48_RS18230 PF02824 TGS domain CH48_RS18230 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH48_RS18230 PF03129 Anticodon binding domain CH48_RS18230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH48_RS18235 PF00707 Translation initiation factor IF-3, C-terminal domain CH48_RS18235 PF05198 Translation initiation factor IF-3, N-terminal domain CH48_RS18240 PF01632 Ribosomal protein L35 CH48_RS18245 PF00453 Ribosomal protein L20 CH48_RS18250 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH48_RS18250 PF01409 tRNA synthetases class II core domain (F) CH48_RS18255 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH48_RS18255 PF01588 Putative tRNA binding domain CH48_RS18255 PF03147 Ferredoxin-fold anticodon binding domain CH48_RS18255 PF03484 tRNA synthetase B5 domain CH48_RS18255 PF03483 B3/4 domain CH48_RS18260 PF00216 Bacterial DNA-binding protein CH48_RS18265 PF05154 TM2 domain CH48_RS18275 PF01032 FecCD transport family CH48_RS18280 PF00255 Glutathione peroxidase CH48_RS18285 PF00005 ABC transporter CH48_RS18290 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH48_RS18295 PF00535 Glycosyl transferase family 2 CH48_RS18300 PF01370 NAD dependent epimerase/dehydratase family CH48_RS18300 PF02911 Formyl transferase, C-terminal domain CH48_RS18300 PF00551 Formyl transferase CH48_RS18305 PF01522 Polysaccharide deacetylase CH48_RS18310 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH48_RS18315 PF00892 EamA-like transporter family CH48_RS18325 PF00877 NlpC/P60 family CH48_RS18330 PF10437 Bacterial lipoate protein ligase C-terminus CH48_RS18330 PF03099 Biotin/lipoate A/B protein ligase family CH48_RS18335 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH48_RS18340 PF01497 Periplasmic binding protein CH48_RS18345 PF05171 Haemin-degrading HemS.ChuX domain CH48_RS18350 PF07715 TonB-dependent Receptor Plug Domain CH48_RS18350 PF00593 TonB dependent receptor CH48_RS18355 PF10636 Hemin uptake protein hemP CH48_RS18360 PF00793 DAHP synthetase I family CH48_RS18365 PF03618 Kinase/pyrophosphorylase CH48_RS18375 PF02896 PEP-utilising enzyme, TIM barrel domain CH48_RS18375 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH48_RS18375 PF00391 PEP-utilising enzyme, mobile domain CH48_RS18380 PF01594 AI-2E family transporter CH48_RS18385 PF02913 FAD linked oxidases, C-terminal domain CH48_RS18385 PF13183 4Fe-4S dicluster domain CH48_RS18385 PF01565 FAD binding domain CH48_RS18395 PF03061 Thioesterase superfamily CH48_RS18400 PF01521 Iron-sulphur cluster biosynthesis CH48_RS18405 PF01458 Uncharacterized protein family (UPF0051) CH48_RS18410 PF00005 ABC transporter CH48_RS18415 PF01458 Uncharacterized protein family (UPF0051) CH48_RS18420 PF00266 Aminotransferase class-V CH48_RS18425 PF02657 Fe-S metabolism associated domain CH48_RS18430 PF17969 L,D-transpeptidase C-terminal domain CH48_RS18430 PF01476 LysM domain CH48_RS18430 PF03734 L,D-transpeptidase catalytic domain CH48_RS18435 PF04728 Lipoprotein leucine-zipper CH48_RS18440 PF02887 Pyruvate kinase, alpha/beta domain CH48_RS18440 PF00224 Pyruvate kinase, barrel domain CH48_RS18460 PF01554 MatE CH48_RS18465 PF00677 Lumazine binding domain CH48_RS18475 PF07690 Major Facilitator Superfamily CH48_RS18480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS18480 PF03466 LysR substrate binding domain CH48_RS18485 PF00356 Bacterial regulatory proteins, lacI family CH48_RS18490 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH48_RS18490 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH48_RS18495 PF00877 NlpC/P60 family CH48_RS18500 PF00462 Glutaredoxin CH48_RS18505 PF00929 Exonuclease CH48_RS18510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH48_RS18515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH48_RS18520 PF16925 Tetracyclin repressor-like, C-terminal domain CH48_RS18520 PF00440 Bacterial regulatory proteins, tetR family CH48_RS18525 PF08019 Phosphoethanolamine transferase EptA/EptB CH48_RS18525 PF00884 Sulfatase CH48_RS18530 PF06945 Protein of unknown function (DUF1289) CH48_RS18535 PF00248 Aldo/keto reductase family CH48_RS18540 PF04632 Fusaric acid resistance protein family CH48_RS18545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_RS18545 PF00529 HlyD membrane-fusion protein of T1SS CH48_RS18550 PF07869 Protein of unknown function (DUF1656) CH48_RS18555 PF01047 MarR family CH48_RS18560 PF05433 Glycine zipper 2TM domain CH48_RS18565 PF03702 Anhydro-N-acetylmuramic acid kinase CH48_RS18570 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH48_RS18575 PF01243 Pyridoxamine 5'-phosphate oxidase CH48_RS18575 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH48_RS18580 PF00579 tRNA synthetases class I (W and Y) CH48_RS18580 PF01479 S4 domain CH48_RS18585 PF08543 Phosphomethylpyrimidine kinase CH48_RS18590 PF00043 Glutathione S-transferase, C-terminal domain CH48_RS18590 PF02798 Glutathione S-transferase, N-terminal domain CH48_RS18595 PF11656 YjbD family (DUF3811) CH48_RS18600 PF04893 Yip1 domain CH48_RS18610 PF00854 POT family CH48_RS18615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS18615 PF03466 LysR substrate binding domain CH48_RS18630 PF00005 ABC transporter CH48_RS18635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_RS18635 PF00005 ABC transporter CH48_RS18640 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS18640 PF12911 N-terminal TM domain of oligopeptide transport permease C CH48_RS18645 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS18650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_RS18655 PF02917 Pertussis toxin, subunit 1 CH48_RS18665 PF02954 Bacterial regulatory protein, Fis family CH48_RS18665 PF00158 Sigma-54 interaction domain CH48_RS18670 PF04012 PspA/IM30 family CH48_RS18675 PF06667 Phage shock protein B CH48_RS18680 PF04024 PspC domain CH48_RS18690 PF04317 YcjX-like family, DUF463 CH48_RS18695 PF05128 Domain of unknown function (DUF697) CH48_RS18700 PF08808 RES domain CH48_RS18705 PF09722 Protein of unknown function (DUF2384) CH48_RS18710 PF00158 Sigma-54 interaction domain CH48_RS18710 PF18024 Helix-turn-helix domain CH48_RS18715 PF08534 Redoxin CH48_RS18720 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH48_RS18720 PF13378 Enolase C-terminal domain-like CH48_RS18725 PF00246 Zinc carboxypeptidase CH48_RS18730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_RS18735 PF01544 CorA-like Mg2+ transporter protein CH48_RS18740 PF01171 PP-loop family CH48_RS18745 PF00388 Phosphatidylinositol-specific phospholipase C, X domain CH48_RS18750 PF10371 Domain of unknown function CH48_RS18750 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH48_RS18750 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH48_RS18750 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH48_RS18750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_RS18755 PF00893 Small Multidrug Resistance protein CH48_RS18760 PF02308 MgtC family CH48_RS18765 PF03891 Domain of unknown function (DUF333) CH48_RS18770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH48_RS18770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_RS18775 PF11739 Dicarboxylate transport CH48_RS18780 PF13617 YnbE-like lipoprotein CH48_RS18785 PF07027 Protein of unknown function (DUF1318) CH48_RS18790 PF02525 Flavodoxin-like fold CH48_RS18795 PF00271 Helicase conserved C-terminal domain CH48_RS18795 PF00270 DEAD/DEAH box helicase CH48_RS18795 PF11898 Domain of unknown function (DUF3418) CH48_RS18795 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH48_RS18795 PF04408 Helicase associated domain (HA2) CH48_RS18810 PF00089 Trypsin CH48_RS18820 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH48_RS18825 PF00512 His Kinase A (phospho-acceptor) domain CH48_RS18825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS18825 PF00672 HAMP domain CH48_RS18830 PF00486 Transcriptional regulatory protein, C terminal CH48_RS18830 PF00072 Response regulator receiver domain CH48_RS18840 PF13520 Amino acid permease CH48_RS18845 PF07338 Protein of unknown function (DUF1471) CH48_RS18855 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH48_RS18855 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH48_RS18855 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH48_RS18860 PF02233 NAD(P) transhydrogenase beta subunit CH48_RS18865 PF00582 Universal stress protein family CH48_RS18870 PF00027 Cyclic nucleotide-binding domain CH48_RS18870 PF13545 Crp-like helix-turn-helix domain CH48_RS18875 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH48_RS18875 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH48_RS18890 PF06445 GyrI-like small molecule binding domain CH48_RS18900 PF00245 Alkaline phosphatase CH48_RS18905 PF00294 pfkB family carbohydrate kinase CH48_RS18910 PF07690 Major Facilitator Superfamily CH48_RS18925 PF13419 Haloacid dehalogenase-like hydrolase CH48_RS18930 PF01842 ACT domain CH48_RS18935 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_RS18935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_RS18935 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_RS18945 PF01510 N-acetylmuramoyl-L-alanine amidase CH48_RS18975 PF07690 Major Facilitator Superfamily CH48_RS18980 PF00459 Inositol monophosphatase family CH48_RS18985 PF00356 Bacterial regulatory proteins, lacI family CH48_RS18990 PF01048 Phosphorylase superfamily CH48_RS18990 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH48_RS18995 PF13700 Domain of unknown function (DUF4158) CH48_RS18995 PF01526 Tn3 transposase DDE domain CH48_RS19000 PF00239 Resolvase, N terminal domain CH48_RS19000 PF02796 Helix-turn-helix domain of resolvase CH48_RS19005 PF02661 Fic/DOC family CH48_RS19005 PF13784 Fic/DOC family N-terminal CH48_RS19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS19015 PF03466 LysR substrate binding domain CH48_RS19030 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_RS19035 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS19040 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS19045 PF01037 Lrp/AsnC ligand binding domain CH48_RS19075 PF02798 Glutathione S-transferase, N-terminal domain CH48_RS19110 PF00263 Bacterial type II and III secretion system protein CH48_RS19110 PF00263 Bacterial type II and III secretion system protein CH48_RS19110 PF03958 Bacterial type II/III secretion system short domain CH48_RS19110 PF03958 Bacterial type II/III secretion system short domain CH48_RS19235 PF07338 Protein of unknown function (DUF1471) CH48_RS19245 PF00106 short chain dehydrogenase CH48_RS19250 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CH48_RS19260 PF06932 Protein of unknown function (DUF1283) CH48_RS19265 PF06649 Protein of unknown function (DUF1161) CH48_RS19275 PF00654 Voltage gated chloride channel CH48_RS19285 PF00480 ROK family CH48_RS19290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS19290 PF03466 LysR substrate binding domain CH48_RS19295 PF07690 Major Facilitator Superfamily CH48_RS19310 PF05472 DNA replication terminus site-binding protein (Ter protein) CH48_RS19320 PF10415 Fumarase C C-terminus CH48_RS19320 PF00206 Lyase CH48_RS19325 PF01238 Phosphomannose isomerase type I CH48_RS19330 PF06097 Bacterial protein of unknown function (DUF945) CH48_RS19335 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_RS19340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_RS19340 PF00356 Bacterial regulatory proteins, lacI family CH48_RS19345 PF00367 phosphotransferase system, EIIB CH48_RS19345 PF02378 Phosphotransferase system, EIIC CH48_RS19350 PF00155 Aminotransferase class I and II CH48_RS19355 PF00962 Adenosine/AMP deaminase CH48_RS19360 PF13593 SBF-like CPA transporter family (DUF4137) CH48_RS19365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH48_RS19365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH48_RS19370 PF12833 Helix-turn-helix domain CH48_RS19370 PF02311 AraC-like ligand binding domain CH48_RS19375 PF02653 Branched-chain amino acid transport system / permease component CH48_RS19380 PF00005 ABC transporter CH48_RS19385 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_RS19390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH48_RS19395 PF11762 L-arabinose isomerase C-terminal domain CH48_RS19395 PF02610 L-arabinose isomerase CH48_RS19400 PF02463 RecF/RecN/SMC N terminal domain CH48_RS19405 PF03412 Peptidase C39 family CH48_RS19405 PF00005 ABC transporter CH48_RS19405 PF00664 ABC transporter transmembrane region CH48_RS19420 PF01268 Formate--tetrahydrofolate ligase CH48_RS19425 PF10754 Protein of unknown function (DUF2569) CH48_RS19430 PF02508 Rnf-Nqr subunit, membrane protein CH48_RS19435 PF04060 Putative Fe-S cluster CH48_RS19440 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH48_RS19440 PF13237 4Fe-4S dicluster domain CH48_RS19440 PF13375 RnfC Barrel sandwich hybrid domain CH48_RS19440 PF10531 SLBB domain CH48_RS19450 PF06445 GyrI-like small molecule binding domain CH48_RS19450 PF12833 Helix-turn-helix domain CH48_RS19455 PF03116 NQR2, RnfD, RnfE family CH48_RS19460 PF04205 FMN-binding domain CH48_RS19465 PF02508 Rnf-Nqr subunit, membrane protein CH48_RS19470 PF00730 HhH-GPD superfamily base excision DNA repair protein CH48_RS19470 PF10576 Iron-sulfur binding domain of endonuclease III CH48_RS19470 PF00633 Helix-hairpin-helix motif CH48_RS19490 PF00384 Molybdopterin oxidoreductase CH48_RS19495 PF08206 Ribonuclease B OB domain CH48_RS19495 PF00773 RNB domain CH48_RS19495 PF00575 S1 RNA binding domain CH48_RS19500 PF13722 5TM C-terminal transporter carbon starvation CstA CH48_RS19500 PF02554 Carbon starvation protein CstA CH48_RS19505 PF04328 Selenoprotein, putative CH48_RS19510 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH48_RS19515 PF00455 DeoR C terminal sensor domain CH48_RS19515 PF08220 DeoR-like helix-turn-helix domain CH48_RS19525 PF00596 Class II Aldolase and Adducin N-terminal domain CH48_RS19530 PF05433 Glycine zipper 2TM domain CH48_RS19540 PF01253 Translation initiation factor SUI1 CH48_RS19545 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH48_RS19550 PF07338 Protein of unknown function (DUF1471) CH48_RS19555 PF03594 Benzoate membrane transport protein CH48_RS19560 PF01381 Helix-turn-helix CH48_RS19560 PF07883 Cupin domain CH48_RS19570 PF18073 Rubredoxin metal binding domain CH48_RS19575 PF06305 Lipopolysaccharide assembly protein A domain CH48_RS19580 PF01569 PAP2 superfamily CH48_RS19585 PF00925 GTP cyclohydrolase II CH48_RS19595 PF00330 Aconitase family (aconitate hydratase) CH48_RS19595 PF00694 Aconitase C-terminal domain CH48_RS19605 PF03466 LysR substrate binding domain CH48_RS19605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS19610 PF01396 Topoisomerase DNA binding C4 zinc finger CH48_RS19610 PF01751 Toprim domain CH48_RS19610 PF01131 DNA topoisomerase CH48_RS19610 PF08272 Topoisomerase I zinc-ribbon-like CH48_RS19615 PF10692 Protein of unknown function (DUF2498) CH48_RS19620 PF08496 Peptidase family S49 N-terminal CH48_RS19620 PF01343 Peptidase family S49 CH48_RS19625 PF00106 short chain dehydrogenase CH48_RS19630 PF12557 Cob(I)alamin adenosyltransferase N terminal CH48_RS19630 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH48_RS19640 PF00849 RNA pseudouridylate synthase CH48_RS19640 PF01479 S4 domain CH48_RS19645 PF01300 Telomere recombination CH48_RS19650 PF02811 PHP domain CH48_RS19655 PF00425 chorismate binding enzyme CH48_RS19655 PF04715 Anthranilate synthase component I, N terminal region CH48_RS19660 PF00117 Glutamine amidotransferase class-I CH48_RS19665 PF02885 Glycosyl transferase family, helical bundle domain CH48_RS19665 PF00591 Glycosyl transferase family, a/b domain CH48_RS19670 PF00218 Indole-3-glycerol phosphate synthase CH48_RS19670 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH48_RS19675 PF00291 Pyridoxal-phosphate dependent enzyme CH48_RS19680 PF00290 Tryptophan synthase alpha chain CH48_RS19690 PF03922 OmpW family CH48_RS19695 PF03692 Putative zinc- or iron-chelating domain CH48_RS19710 PF04279 Intracellular septation protein A CH48_RS19715 PF03061 Thioesterase superfamily CH48_RS19720 PF03544 Gram-negative bacterial TonB protein C-terminal CH48_RS19725 PF03795 YCII-related domain CH48_RS19740 PF13091 PLD-like domain CH48_RS19740 PF13396 Phospholipase_D-nuclease N-terminal CH48_RS19745 PF04269 Protein of unknown function, DUF440 CH48_RS19750 PF00005 ABC transporter CH48_RS19750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_RS19755 PF00005 ABC transporter CH48_RS19755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_RS19760 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS19760 PF12911 N-terminal TM domain of oligopeptide transport permease C CH48_RS19765 PF00528 Binding-protein-dependent transport system inner membrane component CH48_RS19770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_RS19775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_RS19780 PF01914 MarC family integral membrane protein CH48_RS19785 PF00465 Iron-containing alcohol dehydrogenase CH48_RS19785 PF00171 Aldehyde dehydrogenase family CH48_RS19790 PF00265 Thymidine kinase CH48_RS19800 PF00816 H-NS histone family CH48_RS19805 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH48_RS19805 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH48_RS19805 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH48_RS19810 PF00072 Response regulator receiver domain CH48_RS19815 PF01734 Patatin-like phospholipase CH48_RS19825 PF02810 SEC-C motif CH48_RS19830 PF01842 ACT domain CH48_RS19830 PF00551 Formyl transferase CH48_RS19845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS19845 PF03466 LysR substrate binding domain CH48_RS19850 PF03372 Endonuclease/Exonuclease/phosphatase family CH48_RS19855 PF00293 NUDIX domain CH48_RS19860 PF07383 Protein of unknown function (DUF1496) CH48_RS19865 PF01751 Toprim domain CH48_RS19865 PF01131 DNA topoisomerase CH48_RS19870 PF02769 AIR synthase related protein, C-terminal domain CH48_RS19870 PF00586 AIR synthase related protein, N-terminal domain CH48_RS19875 PF00881 Nitroreductase family CH48_RS19880 PF01343 Peptidase family S49 CH48_RS19885 PF17763 Glutaminase/Asparaginase C-terminal domain CH48_RS19885 PF00710 Asparaginase, N-terminal CH48_RS19890 PF00857 Isochorismatase family CH48_RS19900 PF07023 Protein of unknown function (DUF1315) CH48_RS19905 PF01641 SelR domain CH48_RS19910 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH48_RS19910 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH48_RS19915 PF01263 Aldose 1-epimerase CH48_RS19920 PF06629 MltA-interacting protein MipA CH48_RS19925 PF08298 PrkA AAA domain CH48_RS19925 PF06798 PrkA serine protein kinase C-terminal domain CH48_RS19930 PF04285 Protein of unknown function (DUF444) CH48_RS19945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS19945 PF03466 LysR substrate binding domain CH48_RS19950 PF05726 Pirin C-terminal cupin domain CH48_RS19950 PF02678 Pirin CH48_RS19955 PF13426 PAS domain CH48_RS19955 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS19955 PF00563 EAL domain CH48_RS19960 PF07690 Major Facilitator Superfamily CH48_RS19965 PF00842 Alanine racemase, C-terminal domain CH48_RS19965 PF01168 Alanine racemase, N-terminal domain CH48_RS19970 PF01266 FAD dependent oxidoreductase CH48_RS19975 PF04293 SpoVR like protein CH48_RS19980 PF00392 Bacterial regulatory proteins, gntR family CH48_RS19980 PF07840 FadR C-terminal domain CH48_RS19985 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH48_RS19990 PF02600 Disulfide bond formation protein DsbB CH48_RS20010 PF03932 CutC family CH48_RS20015 PF06185 YecM protein CH48_RS20020 PF03485 Arginyl tRNA synthetase N terminal domain CH48_RS20020 PF05746 DALR anticodon binding domain CH48_RS20020 PF00750 tRNA synthetases class I (R) CH48_RS20030 PF02562 PhoH-like protein CH48_RS20045 PF13994 PgaD-like protein CH48_RS20050 PF00535 Glycosyl transferase family 2 CH48_RS20055 PF14883 Hypothetical glycosyl hydrolase family 13 CH48_RS20055 PF01522 Polysaccharide deacetylase CH48_RS20065 PF00557 Metallopeptidase family M24 CH48_RS20070 PF11575 FhuF 2Fe-2S C-terminal domain CH48_RS20070 PF06276 Ferric iron reductase FhuF-like transporter CH48_RS20075 PF02272 DHHA1 domain CH48_RS20075 PF01411 tRNA synthetases class II (A) CH48_RS20075 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH48_RS20080 PF03466 LysR substrate binding domain CH48_RS20080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_RS20085 PF09313 Domain of unknown function (DUF1971) CH48_RS20085 PF03848 Tellurite resistance protein TehB CH48_RS20095 PF00578 AhpC/TSA family CH48_RS20100 PF00005 ABC transporter CH48_RS20100 PF02687 FtsX-like permease family CH48_RS20100 PF12704 MacB-like periplasmic core domain CH48_RS20110 PF02687 FtsX-like permease family CH48_RS20110 PF00005 ABC transporter CH48_RS20110 PF12704 MacB-like periplasmic core domain CH48_RS20120 PF10634 Fe2+ transport protein CH48_RS20125 PF03239 Iron permease FTR1 family CH48_RS20140 PF04960 Glutaminase CH48_RS20145 PF01261 Xylose isomerase-like TIM barrel CH48_RS20150 PF00596 Class II Aldolase and Adducin N-terminal domain CH48_RS20155 PF17042 Nucleotide-binding C-terminal domain CH48_RS20155 PF07005 Sugar-binding N-terminal domain CH48_RS20160 PF00455 DeoR C terminal sensor domain CH48_RS20160 PF08220 DeoR-like helix-turn-helix domain CH48_RS20165 PF17203 Single cache domain 3 CH48_RS20165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS20165 PF00989 PAS fold CH48_RS20165 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH48_RS20170 PF00072 Response regulator receiver domain CH48_RS20175 PF03390 2-hydroxycarboxylate transporter family CH48_RS20180 PF00324 Amino acid permease CH48_RS20195 PF07690 Major Facilitator Superfamily CH48_RS20210 PF00872 Transposase, Mutator family CH48_RS20215 PF08242 Methyltransferase domain CH48_RS20225 PF00872 Transposase, Mutator family CH48_RS20270 PF02899 Phage integrase, N-terminal SAM-like domain CH48_RS20270 PF00589 Phage integrase family CH48_RS20275 PF10709 Protein of unknown function (DUF2511) CH48_RS20280 PF05425 Copper resistance protein D CH48_RS20285 PF04234 CopC domain CH48_RS20290 PF00210 Ferritin-like domain CH48_RS20295 PF06440 DNA polymerase III, theta subunit CH48_RS20300 PF00561 alpha/beta hydrolase fold CH48_RS20305 PF00929 Exonuclease CH48_RS20310 PF00326 Prolyl oligopeptidase family CH48_RS20310 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH48_RS20315 PF13995 YebF-like protein CH48_RS20320 PF04266 ASCH domain CH48_RS20325 PF07130 YebG protein CH48_RS20330 PF00271 Helicase conserved C-terminal domain CH48_RS20330 PF00270 DEAD/DEAH box helicase CH48_RS20330 PF03880 DbpA RNA binding domain CH48_RS20335 PF02222 ATP-grasp domain CH48_RS20340 PF03701 Uncharacterised protein family (UPF0181) CH48_RS20345 PF04715 Anthranilate synthase component I, N terminal region CH48_RS20345 PF00425 chorismate binding enzyme CH48_RS20350 PF00293 NUDIX domain CH48_RS20355 PF03313 Serine dehydratase alpha chain CH48_RS20355 PF03315 Serine dehydratase beta chain CH48_RS20365 PF03471 Transporter associated domain CH48_RS20365 PF03741 Integral membrane protein TerC family CH48_RS20370 PF03610 PTS system fructose IIA component CH48_RS20370 PF03830 PTS system sorbose subfamily IIB component CH48_RS20375 PF03609 PTS system sorbose-specific iic component CH48_RS20380 PF03613 PTS system mannose/fructose/sorbose family IID component CH48_RS20385 PF06173 Protein of unknown function (DUF986) CH48_RS20390 PF02659 Putative manganese efflux pump CH48_RS20395 PF00593 TonB dependent receptor CH48_RS20395 PF07715 TonB-dependent Receptor Plug Domain CH48_RS20400 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS20400 PF13426 PAS domain CH48_RS20400 PF08448 PAS fold CH48_RS20400 PF08447 PAS fold CH48_RS20400 PF05231 MASE1 CH48_RS20400 PF00563 EAL domain CH48_RS20410 PF13847 Methyltransferase domain CH48_RS20415 PF00905 Penicillin binding protein transpeptidase domain CH48_RS20415 PF03717 Penicillin-binding Protein dimerisation domain CH48_RS20420 PF02578 Multi-copper polyphenol oxidoreductase laccase CH48_RS20425 PF00313 'Cold-shock' DNA-binding domain CH48_RS20430 PF10736 Protein of unknown function (DUF2627) CH48_RS20435 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH48_RS20440 PF00324 Amino acid permease CH48_RS20455 PF13974 YebO-like protein CH48_RS20460 PF13996 YobH-like protein CH48_RS20465 PF10964 Protein of unknown function (DUF2766) CH48_RS20475 PF12833 Helix-turn-helix domain CH48_RS20485 PF13520 Amino acid permease CH48_RS20495 PF00664 ABC transporter transmembrane region CH48_RS20495 PF00005 ABC transporter CH48_RS20505 PF03372 Endonuclease/Exonuclease/phosphatase family CH48_RS20515 PF01590 GAF domain CH48_RS20515 PF00563 EAL domain CH48_RS20515 PF00360 Phytochrome region CH48_RS20515 PF00990 Diguanylate cyclase, GGDEF domain CH48_RS20525 PF06411 HdeA/HdeB family CH48_RS20530 PF07007 Lysozyme inhibitor LprI CH48_RS20540 PF00892 EamA-like transporter family CH48_RS20555 PF01638 HxlR-like helix-turn-helix CH48_RS20560 PF05368 NmrA-like family CH48_RS20575 PF00717 Peptidase S24-like CH48_RS20580 PF13438 Domain of unknown function (DUF4113) CH48_RS20580 PF11799 impB/mucB/samB family C-terminal domain CH48_RS20580 PF00817 impB/mucB/samB family CH48_RS20585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_RS20585 PF08447 PAS fold CH48_RS20595 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_RS20595 PF00356 Bacterial regulatory proteins, lacI family CH48_RS20600 PF00251 Glycosyl hydrolases family 32 N-terminal domain CH48_RS20600 PF08244 Glycosyl hydrolases family 32 C terminal CH48_RS20605 PF01306 LacY proton/sugar symporter CH48_RS20620 PF00180 Isocitrate/isopropylmalate dehydrogenase CH48_RS20655 PF00180 Isocitrate/isopropylmalate dehydrogenase CH48_RS20660 PF00849 RNA pseudouridylate synthase CH48_RS20665 PF00293 NUDIX domain CH48_RS20675 PF04356 Protein of unknown function (DUF489) CH48_RS20680 PF00206 Lyase CH48_RS20680 PF08328 Adenylosuccinate lyase C-terminal CH48_RS20690 PF00486 Transcriptional regulatory protein, C terminal CH48_RS20690 PF00072 Response regulator receiver domain CH48_RS20695 PF08918 PhoQ Sensor CH48_RS20695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_RS20700 PF08007 Cupin superfamily protein CH48_RS20705 PF01546 Peptidase family M20/M25/M40 CH48_RS20705 PF07687 Peptidase dimerisation domain CH48_RS20710 PF02146 Sir2 family CH48_RS20715 PF00480 ROK family CH48_RS20720 PF12704 MacB-like periplasmic core domain CH48_RS20720 PF02687 FtsX-like permease family CH48_RS20725 PF00005 ABC transporter CH48_RS20730 PF12704 MacB-like periplasmic core domain CH48_RS20730 PF02687 FtsX-like permease family CH48_RS20735 PF17757 UvrB interaction domain CH48_RS20735 PF00271 Helicase conserved C-terminal domain CH48_RS20735 PF00270 DEAD/DEAH box helicase CH48_RS20735 PF02559 CarD-like/TRCF domain CH48_RS20735 PF03461 TRCF domain CH48_RS20740 PF05433 Glycine zipper 2TM domain CH48_RS20745 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_RS20750 PF05728 Uncharacterised protein family (UPF0227) CH48_RS20755 PF00933 Glycosyl hydrolase family 3 N terminal domain CH48_RS20760 PF01636 Phosphotransferase enzyme family CH48_RS20765 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH48_RS20765 PF13036 Peptidoglycan-synthase activator LpoB CH48_RS20770 PF07233 Protein of unknown function (DUF1425) CH48_RS20775 PF01230 HIT domain CH48_RS20780 PF08501 Shikimate dehydrogenase substrate binding domain CH48_RS20785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_RS20785 PF12793 Sugar transport-related sRNA regulator N-term CH48_RS20790 PF13186 Iron-sulfur cluster-binding domain CH48_RS20790 PF04055 Radical SAM superfamily CH48_RS20800 PF03412 Peptidase C39 family CH48_RS20800 PF00005 ABC transporter CH48_RS20800 PF00664 ABC transporter transmembrane region CH48_RS20810 PF02378 Phosphotransferase system, EIIC CH48_RS20810 PF00367 phosphotransferase system, EIIB CH48_RS20815 PF01026 TatD related DNase CH48_RS20820 PF09115 DNA polymerase III, delta subunit, C terminal CH48_RS20825 PF02223 Thymidylate kinase CH48_RS20865 PF13332 Hemagglutinin repeat CH48_RS20865 PF13018 Extended Signal Peptide of Type V secretion system CH48_RS20865 PF03543 Yersinia/Haemophilus virulence surface antigen CH48_RS20865 PF05860 haemagglutination activity domain CH48_RS20865 PF02661 Fic/DOC family CH48_RS20905 PF00106 short chain dehydrogenase