CH48_RS00460 SM00825 Beta-ketoacyl synthase CH48_RS00470 SM00822 CH48_RS00470 CH48_RS00475 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH48_RS00505 SM00363 S4 RNA-binding domain CH48_RS00510 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_RS00540 SM00421 helix_turn_helix, Lux Regulon CH48_RS00550 SM00450 Rhodanese Homology Domain CH48_RS00560 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS00575 SM00387 Histidine kinase-like ATPases CH48_RS00580 SM00421 helix_turn_helix, Lux Regulon CH48_RS00580 SM00448 cheY-homologous receiver domain CH48_RS00660 SM01091 Transporter associated domain CH48_RS00675 SM00421 helix_turn_helix, Lux Regulon CH48_RS00745 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH48_RS00750 SM00992 Hemimethylated DNA-binding protein YccV like CH48_RS00755 SM00881 CoA binding domain CH48_RS00765 SM00851 MGS-like domain CH48_RS00825 SM00825 Beta-ketoacyl synthase CH48_RS00845 SM00382 ATPases associated with a variety of cellular activities CH48_RS00850 SM00981 CH48_RS00850 CH48_RS00900 SM00052 Putative diguanylate phosphodiesterase CH48_RS00905 SM00849 Metallo-beta-lactamase superfamily CH48_RS00960 SM00357 Cold shock protein domain CH48_RS00965 SM00357 Cold shock protein domain CH48_RS00970 SM01150 CH48_RS00970 CH48_RS00980 SM00382 ATPases associated with a variety of cellular activities CH48_RS00985 SM00849 Metallo-beta-lactamase superfamily CH48_RS00990 SM00411 bacterial (prokaryotic) histone like domain CH48_RS00995 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_RS01020 SM00870 CH48_RS01020 CH48_RS01060 SM00382 ATPases associated with a variety of cellular activities CH48_RS01070 SM00843 CH48_RS01070 CH48_RS01075 SM00344 helix_turn_helix ASNC type CH48_RS01085 SM00382 ATPases associated with a variety of cellular activities CH48_RS01090 SM00382 ATPases associated with a variety of cellular activities CH48_RS01100 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_RS01105 SM00382 ATPases associated with a variety of cellular activities CH48_RS01105 SM01086 C-terminal, D2-small domain, of ClpB protein CH48_RS01120 SM00357 Cold shock protein domain CH48_RS01125 SM00382 ATPases associated with a variety of cellular activities CH48_RS01190 SM00382 ATPases associated with a variety of cellular activities CH48_RS01195 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS01195 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH48_RS01210 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS01210 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH48_RS01235 SM00382 ATPases associated with a variety of cellular activities CH48_RS01270 SM00014 Acid phosphatase homologues CH48_RS01275 SM01133 CH48_RS01275 CH48_RS01280 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_RS01280 SM01134 CH48_RS01280 CH48_RS01300 SM00936 Penicillin-binding protein 5, C-terminal domain CH48_RS01305 SM00116 Domain in cystathionine beta-synthase and other proteins. CH48_RS01320 SM00382 ATPases associated with a variety of cellular activities CH48_RS01320 SM00930 CH48_RS01320 CH48_RS01350 SM00382 ATPases associated with a variety of cellular activities CH48_RS01385 SM00518 AP endonuclease family 2 CH48_RS01410 SM00862 Transcriptional regulatory protein, C terminal CH48_RS01455 SM00841 Elongation factor P, C-terminal CH48_RS01455 SM01185 CH48_RS01455 CH48_RS01475 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS01475 SM00895 CH48_RS01475 CH48_RS01485 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH48_RS01490 SM00014 Acid phosphatase homologues CH48_RS01505 SM00052 Putative diguanylate phosphodiesterase CH48_RS01525 SM00382 ATPases associated with a variety of cellular activities CH48_RS01540 SM00363 S4 RNA-binding domain CH48_RS01545 SM00487 DEAD-like helicases superfamily CH48_RS01545 SM00490 helicase superfamily c-terminal domain CH48_RS01615 SM01057 Eukaryotic-type carbonic anhydrase CH48_RS01655 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS01670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_RS01670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS01725 SM00387 Histidine kinase-like ATPases CH48_RS01725 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS01730 SM00421 helix_turn_helix, Lux Regulon CH48_RS01730 SM00448 cheY-homologous receiver domain CH48_RS01735 SM00387 Histidine kinase-like ATPases CH48_RS01735 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS01735 SM00448 cheY-homologous receiver domain CH48_RS01745 SM00434 DNA Topoisomerase IV CH48_RS01790 SM00852 Probable molybdopterin binding domain CH48_RS01805 SM01060 CH48_RS01805 CH48_RS01815 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH48_RS01935 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS01935 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH48_RS01940 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH48_RS01975 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_RS02015 SM00354 helix_turn _helix lactose operon repressor CH48_RS02055 SM00052 Putative diguanylate phosphodiesterase CH48_RS02070 SM00382 ATPases associated with a variety of cellular activities CH48_RS02085 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS02130 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH48_RS02155 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS02170 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS02210 SM00354 helix_turn _helix lactose operon repressor CH48_RS02245 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_RS02245 SM00091 PAS domain CH48_RS02245 SM00267 diguanylate cyclase CH48_RS02250 SM00825 Beta-ketoacyl synthase CH48_RS02290 SM00463 Small MutS-related domain CH48_RS02365 SM00382 ATPases associated with a variety of cellular activities CH48_RS02470 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH48_RS02470 SM00292 breast cancer carboxy-terminal domain CH48_RS02470 SM00532 Ligase N family CH48_RS02475 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH48_RS02505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS02505 SM00387 Histidine kinase-like ATPases CH48_RS02505 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS02510 SM00448 cheY-homologous receiver domain CH48_RS02510 SM00862 Transcriptional regulatory protein, C terminal CH48_RS02520 SM00382 ATPases associated with a variety of cellular activities CH48_RS02530 SM00382 ATPases associated with a variety of cellular activities CH48_RS02575 SM01130 CH48_RS02575 CH48_RS02630 SM00919 Malic enzyme, NAD binding domain CH48_RS02630 SM01274 CH48_RS02630 CH48_RS02650 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS02665 SM00421 helix_turn_helix, Lux Regulon CH48_RS02665 SM00448 cheY-homologous receiver domain CH48_RS02785 SM01130 CH48_RS02785 CH48_RS02850 SM00382 ATPases associated with a variety of cellular activities CH48_RS02880 SM00924 MgtE intracellular N domain CH48_RS02885 SM00052 Putative diguanylate phosphodiesterase CH48_RS02885 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_RS02885 SM00091 PAS domain CH48_RS02885 SM00267 diguanylate cyclase CH48_RS02915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS02915 SM00387 Histidine kinase-like ATPases CH48_RS02915 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS02920 SM00448 cheY-homologous receiver domain CH48_RS02920 SM00862 Transcriptional regulatory protein, C terminal CH48_RS02935 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH48_RS02965 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_RS02965 SM01134 CH48_RS02965 CH48_RS02970 SM00116 Domain in cystathionine beta-synthase and other proteins. CH48_RS03025 SM00116 Domain in cystathionine beta-synthase and other proteins. CH48_RS03025 SM01240 CH48_RS03025 CH48_RS03050 SM00382 ATPases associated with a variety of cellular activities CH48_RS03060 SM00564 beta-propeller repeat CH48_RS03080 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS03085 SM00028 Tetratricopeptide repeats CH48_RS03095 SM00562 CH48_RS03095 CH48_RS03100 SM00247 Beta/gamma crystallins CH48_RS03110 SM01359 CH48_RS03110 CH48_RS03110 SM01360 CH48_RS03110 CH48_RS03115 SM00869 Autotransporter beta-domain CH48_RS03145 SM00271 DnaJ molecular chaperone homology domain CH48_RS03245 SM00938 Nitrogen regulatory protein P-II CH48_RS03255 SM00382 ATPases associated with a variety of cellular activities CH48_RS03255 SM00448 cheY-homologous receiver domain CH48_RS03265 SM00387 Histidine kinase-like ATPases CH48_RS03265 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS03275 SM01211 CH48_RS03275 CH48_RS03280 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS03340 SM00358 Double-stranded RNA binding motif CH48_RS03340 SM00535 Ribonuclease III family CH48_RS03390 SM00487 DEAD-like helicases superfamily CH48_RS03390 SM00490 helicase superfamily c-terminal domain CH48_RS03405 SM00248 ankyrin repeats CH48_RS03425 SM00986 Uracil DNA glycosylase superfamily CH48_RS03425 SM00987 UreE urease accessory protein, C-terminal domain CH48_RS03510 SM00382 ATPases associated with a variety of cellular activities CH48_RS03530 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS03615 SM00988 UreE urease accessory protein, N-terminal domain CH48_RS03635 SM00382 ATPases associated with a variety of cellular activities CH48_RS03640 SM00382 ATPases associated with a variety of cellular activities CH48_RS03670 SM00450 Rhodanese Homology Domain CH48_RS03685 SM00357 Cold shock protein domain CH48_RS03710 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS03735 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS03765 SM00382 ATPases associated with a variety of cellular activities CH48_RS03785 SM00479 CH48_RS03785 CH48_RS03800 SM00849 Metallo-beta-lactamase superfamily CH48_RS03805 SM00257 Lysin motif CH48_RS03835 SM00825 Beta-ketoacyl synthase CH48_RS03875 SM00382 ATPases associated with a variety of cellular activities CH48_RS03875 SM00930 CH48_RS03875 CH48_RS03915 SM01322 CH48_RS03915 CH48_RS03935 SM00977 TilS substrate C-terminal domain CH48_RS03955 SM00481 DNA polymerase alpha chain like domain CH48_RS03985 SM00935 Outer membrane protein (OmpH-like) CH48_RS03995 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH48_RS04040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_RS04085 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH48_RS04085 SM00475 5'-3' exonuclease CH48_RS04130 SM00925 MltA specific insert domain CH48_RS04150 SM00646 CH48_RS04150 CH48_RS04215 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH48_RS04230 SM00927 DNA mismatch repair enzyme MutH CH48_RS04250 SM00563 Phosphate acyltransferases CH48_RS04265 SM00354 helix_turn _helix lactose operon repressor CH48_RS04290 SM00849 Metallo-beta-lactamase superfamily CH48_RS04310 SM00862 Transcriptional regulatory protein, C terminal CH48_RS04360 SM00382 ATPases associated with a variety of cellular activities CH48_RS04380 SM00947 Carbonic anhydrase CH48_RS04390 SM00822 CH48_RS04390 CH48_RS04400 SM00271 DnaJ molecular chaperone homology domain CH48_RS04410 SM00091 PAS domain CH48_RS04410 SM00267 diguanylate cyclase CH48_RS04435 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS04445 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS04455 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS04470 SM00857 Resolvase, N terminal domain CH48_RS04495 SM00382 ATPases associated with a variety of cellular activities CH48_RS04515 SM00937 CH48_RS04515 CH48_RS04545 SM00387 Histidine kinase-like ATPases CH48_RS04545 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS04550 SM00448 cheY-homologous receiver domain CH48_RS04550 SM00862 Transcriptional regulatory protein, C terminal CH48_RS04585 SM00822 CH48_RS04585 CH48_RS04620 SM01011 Aminopeptidase P, N-terminal domain CH48_RS04640 SM01192 CH48_RS04640 CH48_RS04640 SM01193 CH48_RS04640 CH48_RS04655 SM00954 Region found in RelA / SpoT proteins CH48_RS04665 SM00073 Histidine Phosphotransfer domain CH48_RS04665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS04665 SM00387 Histidine kinase-like ATPases CH48_RS04665 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS04665 SM00448 cheY-homologous receiver domain CH48_RS04670 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH48_RS04675 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_RS04725 SM00382 ATPases associated with a variety of cellular activities CH48_RS04735 SM00487 DEAD-like helicases superfamily CH48_RS04735 SM00490 helicase superfamily c-terminal domain CH48_RS04735 SM00847 Helicase associated domain (HA2) Add an annotation CH48_RS04795 SM00382 ATPases associated with a variety of cellular activities CH48_RS04800 SM00947 Carbonic anhydrase CH48_RS04855 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS04880 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS04880 SM00895 CH48_RS04880 CH48_RS04895 SM00644 CH48_RS04895 CH48_RS04920 SM01240 CH48_RS04920 CH48_RS04945 SM00957 SecA DEAD-like domain CH48_RS04945 SM00958 SecA preprotein cross-linking domain CH48_RS04965 SM00864 Tubulin/FtsZ family, GTPase domain CH48_RS04965 SM00865 Tubulin/FtsZ family, C-terminal domain CH48_RS04970 SM00842 Cell division protein FtsA CH48_RS05050 SM00354 helix_turn _helix lactose operon repressor CH48_RS05075 SM00917 LeuA allosteric (dimerisation) domain CH48_RS05080 SM01329 CH48_RS05080 CH48_RS05155 SM00382 ATPases associated with a variety of cellular activities CH48_RS05165 SM00486 DNA polymerase type-B family CH48_RS05170 SM00487 DEAD-like helicases superfamily CH48_RS05170 SM00490 helicase superfamily c-terminal domain CH48_RS05175 SM00634 Bacterial Ig-like domain (group 1) CH48_RS05185 SM00271 DnaJ molecular chaperone homology domain CH48_RS05205 SM00650 Ribosomal RNA adenine dimethylases CH48_RS05240 SM00851 MGS-like domain CH48_RS05240 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH48_RS05245 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH48_RS05275 SM00904 Riboflavin kinase CH48_RS05300 SM00271 DnaJ molecular chaperone homology domain CH48_RS05315 SM00247 Beta/gamma crystallins CH48_RS05330 SM00852 Probable molybdopterin binding domain CH48_RS05370 SM00448 cheY-homologous receiver domain CH48_RS05370 SM00862 Transcriptional regulatory protein, C terminal CH48_RS05380 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS05380 SM00871 Bacterial transcription activator, effector binding domain CH48_RS05385 SM00855 Phosphoglycerate mutase family CH48_RS05405 SM00831 Cation transporter/ATPase, N-terminus CH48_RS05415 SM00267 diguanylate cyclase CH48_RS05425 SM00382 ATPases associated with a variety of cellular activities CH48_RS05440 SM00829 Enoylreductase CH48_RS05445 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS05450 SM00382 ATPases associated with a variety of cellular activities CH48_RS05475 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH48_RS05480 SM01133 CH48_RS05480 CH48_RS05500 SM00749 bacterial OsmY and nodulation domain CH48_RS05550 SM00267 diguanylate cyclase CH48_RS05580 SM00640 Glycosyl hydrolases family 32 CH48_RS05585 SM00354 helix_turn _helix lactose operon repressor CH48_RS05590 SM00091 PAS domain CH48_RS05635 SM01120 CH48_RS05635 CH48_RS05690 SM00382 ATPases associated with a variety of cellular activities CH48_RS05710 SM01133 CH48_RS05710 CH48_RS05760 SM00421 helix_turn_helix, Lux Regulon CH48_RS05780 SM00382 ATPases associated with a variety of cellular activities CH48_RS05795 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS05885 SM00382 ATPases associated with a variety of cellular activities CH48_RS05890 SM00382 ATPases associated with a variety of cellular activities CH48_RS05920 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS05920 SM00866 CH48_RS05920 CH48_RS05945 SM00382 ATPases associated with a variety of cellular activities CH48_RS05950 SM00382 ATPases associated with a variety of cellular activities CH48_RS05960 SM00072 Guanylate kinase homologues. CH48_RS05970 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH48_RS05995 SM00382 ATPases associated with a variety of cellular activities CH48_RS06085 SM00487 DEAD-like helicases superfamily CH48_RS06085 SM00490 helicase superfamily c-terminal domain CH48_RS06090 SM00028 Tetratricopeptide repeats CH48_RS06095 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_RS06095 SM00322 K homology RNA-binding domain CH48_RS06100 SM01387 CH48_RS06100 CH48_RS06115 SM00173 Ras subfamily of RAS small GTPases CH48_RS06120 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_RS06120 SM00322 K homology RNA-binding domain CH48_RS06155 SM00382 ATPases associated with a variety of cellular activities CH48_RS06165 SM01103 CH48_RS06165 CH48_RS06180 SM00448 cheY-homologous receiver domain CH48_RS06180 SM00862 Transcriptional regulatory protein, C terminal CH48_RS06185 SM00387 Histidine kinase-like ATPases CH48_RS06185 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS06260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_RS06260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS06295 SM01091 Transporter associated domain CH48_RS06380 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH48_RS06385 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_RS06385 SM00357 Cold shock protein domain CH48_RS06385 SM00955 CH48_RS06385 CH48_RS06395 SM00788 Adenylosuccinate synthetase CH48_RS06405 SM00244 prohibitin homologues CH48_RS06410 SM00244 prohibitin homologues CH48_RS06430 SM00853 MutL C terminal dimerisation domain CH48_RS06430 SM01340 CH48_RS06430 CH48_RS06435 SM00257 Lysin motif CH48_RS06435 SM00646 CH48_RS06435 CH48_RS06465 SM00479 CH48_RS06465 CH48_RS06525 SM00841 Elongation factor P, C-terminal CH48_RS06525 SM01185 CH48_RS06525 CH48_RS06550 SM00883 Chaperonin 10 Kd subunit CH48_RS06615 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_RS06655 SM00382 ATPases associated with a variety of cellular activities CH48_RS06660 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS06690 SM00382 ATPases associated with a variety of cellular activities CH48_RS06695 SM00965 Secretin and TonB N terminus short domain CH48_RS06760 SM00382 ATPases associated with a variety of cellular activities CH48_RS06810 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS06875 SM00387 Histidine kinase-like ATPases CH48_RS06875 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS06875 SM00448 cheY-homologous receiver domain CH48_RS06880 SM00421 helix_turn_helix, Lux Regulon CH48_RS06880 SM00448 cheY-homologous receiver domain CH48_RS07005 SM00422 helix_turn_helix, mercury resistance CH48_RS07020 SM00662 RNA polymerases D CH48_RS07025 SM00363 S4 RNA-binding domain CH48_RS07025 SM01390 CH48_RS07025 CH48_RS07090 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH48_RS07095 SM01374 CH48_RS07095 CH48_RS07115 SM00322 K homology RNA-binding domain CH48_RS07130 SM01382 CH48_RS07130 CH48_RS07130 SM01383 CH48_RS07130 CH48_RS07150 SM01403 CH48_RS07150 CH48_RS07170 SM00838 Elongation factor G C-terminus CH48_RS07170 SM00889 Elongation factor G, domain IV CH48_RS07235 SM00382 ATPases associated with a variety of cellular activities CH48_RS07260 SM00382 ATPases associated with a variety of cellular activities CH48_RS07265 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS07300 SM00100 Cyclic nucleotide-monophosphate binding domain CH48_RS07300 SM00419 helix_turn_helix, cAMP Regulatory protein CH48_RS07320 SM00382 ATPases associated with a variety of cellular activities CH48_RS07335 SM00354 helix_turn _helix lactose operon repressor CH48_RS07450 SM00363 S4 RNA-binding domain CH48_RS07470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS07470 SM00387 Histidine kinase-like ATPases CH48_RS07470 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS07475 SM00448 cheY-homologous receiver domain CH48_RS07475 SM00862 Transcriptional regulatory protein, C terminal CH48_RS07505 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_RS07505 SM00732 Likely ribonuclease with RNase H fold. CH48_RS07510 SM00899 CH48_RS07510 CH48_RS07570 SM00421 helix_turn_helix, Lux Regulon CH48_RS07580 SM00450 Rhodanese Homology Domain CH48_RS07590 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_RS07590 SM01134 CH48_RS07590 CH48_RS07620 SM00642 Alpha-amylase domain CH48_RS07625 SM00642 Alpha-amylase domain CH48_RS07650 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH48_RS07670 SM00354 helix_turn _helix lactose operon repressor CH48_RS07820 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH48_RS07850 SM00869 Autotransporter beta-domain CH48_RS07870 SM00052 Putative diguanylate phosphodiesterase CH48_RS07910 SM00052 Putative diguanylate phosphodiesterase CH48_RS07965 SM00382 ATPases associated with a variety of cellular activities CH48_RS07970 SM00382 ATPases associated with a variety of cellular activities CH48_RS08005 SM00421 helix_turn_helix, Lux Regulon CH48_RS08005 SM00448 cheY-homologous receiver domain CH48_RS08010 SM00387 Histidine kinase-like ATPases CH48_RS08035 SM00912 haemagglutination activity domain CH48_RS08070 SM00354 helix_turn _helix lactose operon repressor CH48_RS08145 SM00382 ATPases associated with a variety of cellular activities CH48_RS08175 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS08185 SM00382 ATPases associated with a variety of cellular activities CH48_RS08215 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS08260 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS08275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_RS08275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS08275 SM01358 CH48_RS08275 CH48_RS08290 SM00966 SpoVT / AbrB like domain CH48_RS08300 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS08380 SM00642 Alpha-amylase domain CH48_RS08430 SM00387 Histidine kinase-like ATPases CH48_RS08430 SM00433 TopoisomeraseII CH48_RS08440 SM00480 DNA polymerase III beta subunit CH48_RS08445 SM00382 ATPases associated with a variety of cellular activities CH48_RS08445 SM00760 Bacterial dnaA protein helix-turn-helix domain CH48_RS08460 SM01234 CH48_RS08460 CH48_RS08485 SM00382 ATPases associated with a variety of cellular activities CH48_RS08485 SM00930 CH48_RS08485 CH48_RS08495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_RS08495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS08505 SM00387 Histidine kinase-like ATPases CH48_RS08505 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS08510 SM00421 helix_turn_helix, Lux Regulon CH48_RS08510 SM00448 cheY-homologous receiver domain CH48_RS08540 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS08555 SM00382 ATPases associated with a variety of cellular activities CH48_RS08595 SM00382 ATPases associated with a variety of cellular activities CH48_RS08640 SM01228 CH48_RS08640 CH48_RS08650 SM00344 helix_turn_helix ASNC type CH48_RS08665 SM00327 von Willebrand factor (vWF) type A domain CH48_RS08670 SM00382 ATPases associated with a variety of cellular activities CH48_RS08685 SM00382 ATPases associated with a variety of cellular activities CH48_RS08705 SM00354 helix_turn _helix lactose operon repressor CH48_RS08715 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS08715 SM00895 CH48_RS08715 CH48_RS08775 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH48_RS08775 SM00474 3'-5' exonuclease CH48_RS08775 SM00475 5'-3' exonuclease CH48_RS08775 SM00482 DNA polymerase A domain CH48_RS08790 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_RS08795 SM00382 ATPases associated with a variety of cellular activities CH48_RS08795 SM00448 cheY-homologous receiver domain CH48_RS08800 SM00091 PAS domain CH48_RS08800 SM00387 Histidine kinase-like ATPases CH48_RS08800 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS08810 SM01230 CH48_RS08810 CH48_RS08845 SM00421 helix_turn_helix, Lux Regulon CH48_RS08850 SM00421 helix_turn_helix, Lux Regulon CH48_RS08855 SM00421 helix_turn_helix, Lux Regulon CH48_RS08880 SM00487 DEAD-like helicases superfamily CH48_RS08880 SM00490 helicase superfamily c-terminal domain CH48_RS08890 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_RS08890 SM00954 Region found in RelA / SpoT proteins CH48_RS08895 SM01409 CH48_RS08895 CH48_RS08900 SM00072 Guanylate kinase homologues. CH48_RS08930 SM00052 Putative diguanylate phosphodiesterase CH48_RS08930 SM00091 PAS domain CH48_RS08930 SM00267 diguanylate cyclase CH48_RS08940 SM00849 Metallo-beta-lactamase superfamily CH48_RS08990 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH48_RS08990 SM01232 CH48_RS08990 CH48_RS09030 SM00829 Enoylreductase CH48_RS09065 SM00450 Rhodanese Homology Domain CH48_RS09085 SM00971 Serine acetyltransferase, N-terminal CH48_RS09095 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS09100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS09100 SM00387 Histidine kinase-like ATPases CH48_RS09100 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS09105 SM00448 cheY-homologous receiver domain CH48_RS09105 SM00862 Transcriptional regulatory protein, C terminal CH48_RS09200 SM00382 ATPases associated with a variety of cellular activities CH48_RS09200 SM01086 C-terminal, D2-small domain, of ClpB protein CH48_RS09215 SM00354 helix_turn _helix lactose operon repressor CH48_RS09220 SM00487 DEAD-like helicases superfamily CH48_RS09220 SM00490 helicase superfamily c-terminal domain CH48_RS09260 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH48_RS09295 SM00382 ATPases associated with a variety of cellular activities CH48_RS09400 SM00382 ATPases associated with a variety of cellular activities CH48_RS09425 SM00382 ATPases associated with a variety of cellular activities CH48_RS09535 SM00060 Fibronectin type 3 domain CH48_RS09545 SM00487 DEAD-like helicases superfamily CH48_RS09545 SM00490 helicase superfamily c-terminal domain CH48_RS09555 SM00357 Cold shock protein domain CH48_RS09555 SM00382 ATPases associated with a variety of cellular activities CH48_RS09555 SM00959 Rho termination factor, N-terminal domain CH48_RS09580 SM00984 UDP binding domain CH48_RS09680 SM01219 CH48_RS09680 CH48_RS09750 SM00341 Helicase and RNase D C-terminal CH48_RS09750 SM00487 DEAD-like helicases superfamily CH48_RS09750 SM00490 helicase superfamily c-terminal domain CH48_RS09750 SM00956 CH48_RS09750 CH48_RS09845 SM00382 ATPases associated with a variety of cellular activities CH48_RS09845 SM00962 SRP54-type protein, GTPase domain CH48_RS09845 SM00963 SRP54-type protein, helical bundle domain CH48_RS09850 SM00382 ATPases associated with a variety of cellular activities CH48_RS09895 SM00382 ATPases associated with a variety of cellular activities CH48_RS09900 SM00382 ATPases associated with a variety of cellular activities CH48_RS09950 SM00382 ATPases associated with a variety of cellular activities CH48_RS10050 SM01004 Delta-aminolevulinic acid dehydratase CH48_RS10055 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH48_RS10180 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH48_RS10180 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH48_RS10185 SM00649 Ribosomal protein L11/L12 CH48_RS10210 SM00663 RNA polymerase I subunit A N-terminus CH48_RS10220 SM00876 Biotin and Thiamin Synthesis associated domain CH48_RS10275 SM00411 bacterial (prokaryotic) histone like domain CH48_RS10285 SM01209 CH48_RS10285 CH48_RS10285 SM01210 CH48_RS10285 CH48_RS10290 SM00798 AICARFT/IMPCHase bienzyme CH48_RS10290 SM00851 MGS-like domain CH48_RS10350 SM00346 helix_turn_helix isocitrate lyase regulation CH48_RS10355 SM01018 B12 binding domain CH48_RS10360 SM00912 haemagglutination activity domain CH48_RS10405 SM00382 ATPases associated with a variety of cellular activities CH48_RS10435 SM00563 Phosphate acyltransferases CH48_RS10480 SM00829 Enoylreductase CH48_RS10485 SM00382 ATPases associated with a variety of cellular activities CH48_RS10490 SM01005 Alanine racemase, C-terminal domain CH48_RS10525 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS10560 SM00382 ATPases associated with a variety of cellular activities CH48_RS10575 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS10595 SM00357 Cold shock protein domain CH48_RS10600 SM00357 Cold shock protein domain CH48_RS10610 SM00267 diguanylate cyclase CH48_RS10640 SM00878 Biotin carboxylase C-terminal domain CH48_RS10665 SM00829 Enoylreductase CH48_RS10670 SM00052 Putative diguanylate phosphodiesterase CH48_RS10670 SM00267 diguanylate cyclase CH48_RS10695 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_RS10885 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS10895 SM00831 Cation transporter/ATPase, N-terminus CH48_RS10900 SM00354 helix_turn _helix lactose operon repressor CH48_RS10910 SM00642 Alpha-amylase domain CH48_RS10920 SM00460 Transglutaminase/protease-like homologues CH48_RS10975 SM00382 ATPases associated with a variety of cellular activities CH48_RS11005 SM00382 ATPases associated with a variety of cellular activities CH48_RS11040 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH48_RS11045 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH48_RS11100 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_RS11105 SM00073 Histidine Phosphotransfer domain CH48_RS11105 SM00091 PAS domain CH48_RS11105 SM00387 Histidine kinase-like ATPases CH48_RS11105 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS11105 SM00448 cheY-homologous receiver domain CH48_RS11120 SM00749 bacterial OsmY and nodulation domain CH48_RS11180 SM00829 Enoylreductase CH48_RS11240 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS11240 SM00895 CH48_RS11240 CH48_RS11260 SM00858 CH48_RS11260 CH48_RS11295 SM00869 Autotransporter beta-domain CH48_RS11305 SM00869 Autotransporter beta-domain CH48_RS11400 SM00400 zinc finger CH48_RS11400 SM00493 CH48_RS11400 CH48_RS11400 SM00766 DNA primase DnaG DnaB-binding CH48_RS11415 SM01207 CH48_RS11415 CH48_RS11420 SM00905 Dihydroneopterin aldolase CH48_RS11430 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_RS11435 SM00287 Bacterial SH3 domain homologues CH48_RS11440 SM01118 CH48_RS11440 CH48_RS11510 SM00387 Histidine kinase-like ATPases CH48_RS11510 SM00433 TopoisomeraseII CH48_RS11530 SM00434 DNA Topoisomerase IV CH48_RS11535 SM00563 Phosphate acyltransferases CH48_RS11545 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_RS11560 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS11680 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS11700 SM00382 ATPases associated with a variety of cellular activities CH48_RS11730 SM00382 ATPases associated with a variety of cellular activities CH48_RS11760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_RS11805 SM00382 ATPases associated with a variety of cellular activities CH48_RS11830 SM00382 ATPases associated with a variety of cellular activities CH48_RS11855 SM00858 CH48_RS11855 CH48_RS11925 SM00862 Transcriptional regulatory protein, C terminal CH48_RS12055 SM00052 Putative diguanylate phosphodiesterase CH48_RS12055 SM00091 PAS domain CH48_RS12055 SM00267 diguanylate cyclase CH48_RS12100 SM00354 helix_turn _helix lactose operon repressor CH48_RS12150 SM00382 ATPases associated with a variety of cellular activities CH48_RS12270 SM00478 endonuclease III CH48_RS12270 SM00525 CH48_RS12270 CH48_RS12295 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_RS12305 SM01152 CH48_RS12305 CH48_RS12340 SM00732 Likely ribonuclease with RNase H fold. CH48_RS12365 SM00731 SprT homologues. CH48_RS12370 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH48_RS12405 SM00861 Transketolase, pyrimidine binding domain CH48_RS12410 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH48_RS12425 SM00194 Protein tyrosine phosphatase, catalytic domain CH48_RS12425 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH48_RS12610 SM00257 Lysin motif CH48_RS12620 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH48_RS12620 SM00534 ATPase domain of DNA mismatch repair MUTS family CH48_RS12690 SM00382 ATPases associated with a variety of cellular activities CH48_RS12700 SM00382 ATPases associated with a variety of cellular activities CH48_RS12710 SM00825 Beta-ketoacyl synthase CH48_RS12725 SM00822 CH48_RS12725 CH48_RS12740 SM01235 CH48_RS12740 CH48_RS12750 SM00838 Elongation factor G C-terminus CH48_RS12750 SM00889 Elongation factor G, domain IV CH48_RS12755 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH48_RS12795 SM01012 CH48_RS12795 CH48_RS12810 SM00382 ATPases associated with a variety of cellular activities CH48_RS12840 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS12875 SM00382 ATPases associated with a variety of cellular activities CH48_RS12885 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH48_RS12940 SM01091 Transporter associated domain CH48_RS12950 SM00382 ATPases associated with a variety of cellular activities CH48_RS12950 SM00962 SRP54-type protein, GTPase domain CH48_RS12950 SM00963 SRP54-type protein, helical bundle domain CH48_RS12985 SM00448 cheY-homologous receiver domain CH48_RS12985 SM00850 LytTr DNA-binding domain CH48_RS12995 SM00830 Chorismate mutase type II CH48_RS13000 SM00830 Chorismate mutase type II CH48_RS13015 SM00382 ATPases associated with a variety of cellular activities CH48_RS13015 SM01086 C-terminal, D2-small domain, of ClpB protein CH48_RS13025 SM00363 S4 RNA-binding domain CH48_RS13070 SM00155 Phospholipase D. Active site motifs. CH48_RS13075 SM00881 CoA binding domain CH48_RS13080 SM01144 CH48_RS13080 CH48_RS13090 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH48_RS13120 SM00347 helix_turn_helix multiple antibiotic resistance protein CH48_RS13170 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS13185 SM00382 ATPases associated with a variety of cellular activities CH48_RS13210 SM01007 Class II Aldolase and Adducin N-terminal domain CH48_RS13240 SM00710 Parallel beta-helix repeats CH48_RS13240 SM00912 haemagglutination activity domain CH48_RS13280 SM00900 CH48_RS13280 CH48_RS13360 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH48_RS13370 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS13370 SM00866 CH48_RS13370 CH48_RS13390 SM01068 Putative carbohydrate binding domain CH48_RS13460 SM00448 cheY-homologous receiver domain CH48_RS13460 SM00862 Transcriptional regulatory protein, C terminal CH48_RS13465 SM00091 PAS domain CH48_RS13465 SM00387 Histidine kinase-like ATPases CH48_RS13465 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS13485 SM00642 Alpha-amylase domain CH48_RS13535 SM01323 CH48_RS13535 CH48_RS13600 SM00861 Transketolase, pyrimidine binding domain CH48_RS13615 SM00981 CH48_RS13615 CH48_RS13700 SM00382 ATPases associated with a variety of cellular activities CH48_RS13700 SM00994 ClpX C4-type zinc finger CH48_RS13700 SM01086 C-terminal, D2-small domain, of ClpB protein CH48_RS13705 SM00382 ATPases associated with a variety of cellular activities CH48_RS13705 SM00464 Found in ATP-dependent protease La (LON) CH48_RS13710 SM00411 bacterial (prokaryotic) histone like domain CH48_RS13720 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH48_RS13750 SM00344 helix_turn_helix ASNC type CH48_RS13755 SM00382 ATPases associated with a variety of cellular activities CH48_RS13760 SM00382 ATPases associated with a variety of cellular activities CH48_RS13765 SM00938 Nitrogen regulatory protein P-II CH48_RS13805 SM00382 ATPases associated with a variety of cellular activities CH48_RS13900 SM00382 ATPases associated with a variety of cellular activities CH48_RS13910 SM00493 CH48_RS13910 CH48_RS13915 SM00387 Histidine kinase-like ATPases CH48_RS14015 SM00422 helix_turn_helix, mercury resistance CH48_RS14025 SM00244 prohibitin homologues CH48_RS14035 SM00822 CH48_RS14035 CH48_RS14045 SM00382 ATPases associated with a variety of cellular activities CH48_RS14060 SM01001 AIR carboxylase CH48_RS14075 SM00840 CH48_RS14075 CH48_RS14100 SM00382 ATPases associated with a variety of cellular activities CH48_RS14120 SM00448 cheY-homologous receiver domain CH48_RS14120 SM00862 Transcriptional regulatory protein, C terminal CH48_RS14140 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH48_RS14155 SM00382 ATPases associated with a variety of cellular activities CH48_RS14180 SM00421 helix_turn_helix, Lux Regulon CH48_RS14190 SM00357 Cold shock protein domain CH48_RS14200 SM00267 diguanylate cyclase CH48_RS14210 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_RS14225 SM00936 Penicillin-binding protein 5, C-terminal domain CH48_RS14280 SM00382 ATPases associated with a variety of cellular activities CH48_RS14295 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS14310 SM00116 Domain in cystathionine beta-synthase and other proteins. CH48_RS14310 SM01091 Transporter associated domain CH48_RS14325 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_RS14410 SM01081 Putative carbohydrate binding domain CH48_RS14425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_RS14460 SM00448 cheY-homologous receiver domain CH48_RS14460 SM00862 Transcriptional regulatory protein, C terminal CH48_RS14465 SM00387 Histidine kinase-like ATPases CH48_RS14465 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS14530 SM00796 Allophanate hydrolase subunit 1 CH48_RS14535 SM00797 Allophanate hydrolase subunit 2 CH48_RS14585 SM00861 Transketolase, pyrimidine binding domain CH48_RS14600 SM00881 CoA binding domain CH48_RS14710 SM00855 Phosphoglycerate mutase family CH48_RS14715 SM00477 DNA/RNA non-specific endonuclease CH48_RS14715 SM00892 DNA/RNA non-specific endonuclease CH48_RS14760 SM00382 ATPases associated with a variety of cellular activities CH48_RS14790 SM00487 DEAD-like helicases superfamily CH48_RS14800 SM00990 CH48_RS14800 CH48_RS14810 SM00482 DNA polymerase A domain CH48_RS14840 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS14845 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS14975 SM00382 ATPases associated with a variety of cellular activities CH48_RS14995 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_RS14995 SM00876 Biotin and Thiamin Synthesis associated domain CH48_RS15015 SM00382 ATPases associated with a variety of cellular activities CH48_RS15020 SM00487 DEAD-like helicases superfamily CH48_RS15020 SM00490 helicase superfamily c-terminal domain CH48_RS15035 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_RS15070 SM00382 ATPases associated with a variety of cellular activities CH48_RS15085 SM00487 DEAD-like helicases superfamily CH48_RS15085 SM00490 helicase superfamily c-terminal domain CH48_RS15100 SM00116 Domain in cystathionine beta-synthase and other proteins. CH48_RS15120 SM01118 CH48_RS15120 CH48_RS15125 SM00507 HNH nucleases CH48_RS15140 SM00382 ATPases associated with a variety of cellular activities CH48_RS15185 SM00382 ATPases associated with a variety of cellular activities CH48_RS15190 SM00450 Rhodanese Homology Domain CH48_RS15215 SM00382 ATPases associated with a variety of cellular activities CH48_RS15260 SM00487 DEAD-like helicases superfamily CH48_RS15260 SM00488 CH48_RS15260 CH48_RS15260 SM00491 CH48_RS15260 CH48_RS15285 SM00903 Flavin reductase like domain CH48_RS15295 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_RS15295 SM00091 PAS domain CH48_RS15295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_RS15300 SM00382 ATPases associated with a variety of cellular activities CH48_RS15310 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS15310 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH48_RS15340 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CH48_RS15380 SM00382 ATPases associated with a variety of cellular activities CH48_RS15395 SM00852 Probable molybdopterin binding domain CH48_RS15410 SM00382 ATPases associated with a variety of cellular activities CH48_RS15435 SM00829 Enoylreductase CH48_RS15460 SM00354 helix_turn _helix lactose operon repressor CH48_RS15470 SM00382 ATPases associated with a variety of cellular activities CH48_RS15480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH48_RS15480 SM00382 ATPases associated with a variety of cellular activities CH48_RS15485 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_RS15565 SM00919 Malic enzyme, NAD binding domain CH48_RS15565 SM01274 CH48_RS15565 CH48_RS15640 SM01091 Transporter associated domain CH48_RS15680 SM00382 ATPases associated with a variety of cellular activities CH48_RS15705 SM01350 CH48_RS15705 CH48_RS15765 SM00382 ATPases associated with a variety of cellular activities CH48_RS15815 SM00382 ATPases associated with a variety of cellular activities CH48_RS15850 SM00877 CH48_RS15850 CH48_RS15855 SM00877 CH48_RS15855 CH48_RS15895 SM00877 CH48_RS15895 CH48_RS15900 SM00877 CH48_RS15900 CH48_RS15930 SM00877 CH48_RS15930 CH48_RS15935 SM00877 CH48_RS15935 CH48_RS15945 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS16025 SM00382 ATPases associated with a variety of cellular activities CH48_RS16045 SM00855 Phosphoglycerate mutase family CH48_RS16065 SM00421 helix_turn_helix, Lux Regulon CH48_RS16110 SM00382 ATPases associated with a variety of cellular activities CH48_RS16110 SM01086 C-terminal, D2-small domain, of ClpB protein CH48_RS16220 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_RS16220 SM01134 CH48_RS16220 CH48_RS16230 SM00260 Two component signalling adaptor domain CH48_RS16230 SM00448 cheY-homologous receiver domain CH48_RS16260 SM00382 ATPases associated with a variety of cellular activities CH48_RS16280 SM00387 Histidine kinase-like ATPases CH48_RS16285 SM00421 helix_turn_helix, Lux Regulon CH48_RS16285 SM00448 cheY-homologous receiver domain CH48_RS16290 SM00448 cheY-homologous receiver domain CH48_RS16295 SM00091 PAS domain CH48_RS16295 SM00387 Histidine kinase-like ATPases CH48_RS16420 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS16420 SM00387 Histidine kinase-like ATPases CH48_RS16420 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS16420 SM00448 cheY-homologous receiver domain CH48_RS16425 SM00421 helix_turn_helix, Lux Regulon CH48_RS16425 SM00448 cheY-homologous receiver domain CH48_RS16500 SM00344 helix_turn_helix ASNC type CH48_RS16510 SM00829 Enoylreductase CH48_RS16520 SM01038 Beta galactosidase small chain CH48_RS16525 SM00354 helix_turn _helix lactose operon repressor CH48_RS16530 SM00357 Cold shock protein domain CH48_RS16540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_RS16540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS16560 SM00831 Cation transporter/ATPase, N-terminus CH48_RS16565 SM00829 Enoylreductase CH48_RS16595 SM00073 Histidine Phosphotransfer domain CH48_RS16595 SM00260 Two component signalling adaptor domain CH48_RS16595 SM00387 Histidine kinase-like ATPases CH48_RS16595 SM01231 CH48_RS16595 CH48_RS16600 SM00260 Two component signalling adaptor domain CH48_RS16605 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_RS16605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS16605 SM00319 Homologues of the ligand binding domain of Tar CH48_RS16610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_RS16610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS16610 SM00319 Homologues of the ligand binding domain of Tar CH48_RS16615 SM00138 Methyltransferase, chemotaxis proteins CH48_RS16620 SM00448 cheY-homologous receiver domain CH48_RS16625 SM00448 cheY-homologous receiver domain CH48_RS16655 SM00634 Bacterial Ig-like domain (group 1) CH48_RS16670 SM00858 CH48_RS16670 CH48_RS16715 SM00047 Lysozyme subfamily 2 CH48_RS16775 SM00382 ATPases associated with a variety of cellular activities CH48_RS16830 SM00478 endonuclease III CH48_RS16835 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_RS16840 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS16895 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS16895 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH48_RS16905 SM00382 ATPases associated with a variety of cellular activities CH48_RS16965 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS16970 SM00612 CH48_RS16970 CH48_RS16985 SM00903 Flavin reductase like domain CH48_RS17060 SM00642 Alpha-amylase domain CH48_RS17080 SM00421 helix_turn_helix, Lux Regulon CH48_RS17080 SM00448 cheY-homologous receiver domain CH48_RS17085 SM00465 GIY-YIG type nucleases (URI domain) CH48_RS17295 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS17375 SM01400 CH48_RS17375 CH48_RS17395 SM00937 CH48_RS17395 CH48_RS17425 SM00267 diguanylate cyclase CH48_RS17450 SM00481 DNA polymerase alpha chain like domain CH48_RS17520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS17520 SM00387 Histidine kinase-like ATPases CH48_RS17535 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS17595 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS17595 SM00866 CH48_RS17595 CH48_RS17620 SM00869 Autotransporter beta-domain CH48_RS17635 SM00257 Lysin motif CH48_RS17675 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_RS17675 SM01134 CH48_RS17675 CH48_RS17695 SM00363 S4 RNA-binding domain CH48_RS17770 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH48_RS17775 SM00382 ATPases associated with a variety of cellular activities CH48_RS17790 SM00382 ATPases associated with a variety of cellular activities CH48_RS17800 SM00257 Lysin motif CH48_RS17855 SM00487 DEAD-like helicases superfamily CH48_RS17855 SM00491 CH48_RS17855 CH48_RS17875 SM00341 Helicase and RNase D C-terminal CH48_RS17875 SM00474 3'-5' exonuclease CH48_RS17960 SM01022 CH48_RS17960 CH48_RS17970 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_RS17970 SM00091 PAS domain CH48_RS17970 SM00267 diguanylate cyclase CH48_RS17975 SM00972 Spore Coat Protein U domain CH48_RS17990 SM00972 Spore Coat Protein U domain CH48_RS17995 SM00972 Spore Coat Protein U domain CH48_RS18000 SM00972 Spore Coat Protein U domain CH48_RS18025 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH48_RS18030 SM00945 ProQ/FINO family CH48_RS18035 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH48_RS18035 SM00245 tail specific protease CH48_RS18060 SM00346 helix_turn_helix isocitrate lyase regulation CH48_RS18065 SM00644 CH48_RS18065 CH48_RS18095 SM00382 ATPases associated with a variety of cellular activities CH48_RS18180 SM00382 ATPases associated with a variety of cellular activities CH48_RS18230 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH48_RS18255 SM00873 B3/4 domain CH48_RS18255 SM00874 tRNA synthetase B5 domain CH48_RS18255 SM00896 Ferredoxin-fold anticodon binding domain CH48_RS18260 SM00411 bacterial (prokaryotic) histone like domain CH48_RS18285 SM00382 ATPases associated with a variety of cellular activities CH48_RS18410 SM00382 ATPases associated with a variety of cellular activities CH48_RS18485 SM00354 helix_turn _helix lactose operon repressor CH48_RS18505 SM00479 CH48_RS18505 CH48_RS18555 SM00347 helix_turn_helix multiple antibiotic resistance protein CH48_RS18580 SM00363 S4 RNA-binding domain CH48_RS18630 SM00382 ATPases associated with a variety of cellular activities CH48_RS18635 SM00382 ATPases associated with a variety of cellular activities CH48_RS18665 SM00382 ATPases associated with a variety of cellular activities CH48_RS18700 SM00953 CH48_RS18700 CH48_RS18710 SM00091 PAS domain CH48_RS18710 SM00382 ATPases associated with a variety of cellular activities CH48_RS18720 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH48_RS18745 SM00148 Phospholipase C, catalytic domain (part); domain X CH48_RS18750 SM00890 Domain of unknown function CH48_RS18795 SM00382 ATPases associated with a variety of cellular activities CH48_RS18795 SM00487 DEAD-like helicases superfamily CH48_RS18795 SM00490 helicase superfamily c-terminal domain CH48_RS18795 SM00847 Helicase associated domain (HA2) Add an annotation CH48_RS18805 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS18810 SM00020 Trypsin-like serine protease CH48_RS18825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_RS18825 SM00387 Histidine kinase-like ATPases CH48_RS18825 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS18830 SM00448 cheY-homologous receiver domain CH48_RS18830 SM00862 Transcriptional regulatory protein, C terminal CH48_RS18855 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH48_RS18855 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH48_RS18870 SM00100 Cyclic nucleotide-monophosphate binding domain CH48_RS18870 SM00419 helix_turn_helix, cAMP Regulatory protein CH48_RS18890 SM00871 Bacterial transcription activator, effector binding domain CH48_RS18895 SM00822 CH48_RS18895 CH48_RS18900 SM00098 Alkaline phosphatase homologues CH48_RS18945 SM00644 CH48_RS18945 CH48_RS18985 SM00354 helix_turn _helix lactose operon repressor CH48_RS19000 SM00857 Resolvase, N terminal domain CH48_RS19030 SM00062 Bacterial periplasmic substrate-binding proteins CH48_RS19045 SM00344 helix_turn_helix ASNC type CH48_RS19055 SM00347 helix_turn_helix multiple antibiotic resistance protein CH48_RS19095 SM00421 helix_turn_helix, Lux Regulon CH48_RS19315 SM00421 helix_turn_helix, Lux Regulon CH48_RS19340 SM00354 helix_turn _helix lactose operon repressor CH48_RS19370 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS19380 SM00382 ATPases associated with a variety of cellular activities CH48_RS19405 SM00382 ATPases associated with a variety of cellular activities CH48_RS19450 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS19460 SM00900 CH48_RS19460 CH48_RS19470 SM00478 endonuclease III CH48_RS19470 SM00525 CH48_RS19470 CH48_RS19495 SM00357 Cold shock protein domain CH48_RS19495 SM00955 CH48_RS19495 CH48_RS19515 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_RS19515 SM01134 CH48_RS19515 CH48_RS19525 SM01007 Class II Aldolase and Adducin N-terminal domain CH48_RS19545 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH48_RS19560 SM00530 Helix-turn-helix XRE-family like proteins CH48_RS19570 SM00028 Tetratricopeptide repeats CH48_RS19580 SM00014 Acid phosphatase homologues CH48_RS19610 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH48_RS19610 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH48_RS19610 SM00493 CH48_RS19610 CH48_RS19625 SM00822 CH48_RS19625 CH48_RS19640 SM00363 S4 RNA-binding domain CH48_RS19650 SM00481 DNA polymerase alpha chain like domain CH48_RS19685 SM00749 bacterial OsmY and nodulation domain CH48_RS19735 SM00052 Putative diguanylate phosphodiesterase CH48_RS19740 SM00155 Phospholipase D. Active site motifs. CH48_RS19750 SM00382 ATPases associated with a variety of cellular activities CH48_RS19755 SM00382 ATPases associated with a variety of cellular activities CH48_RS19800 SM00528 Domain in histone-like proteins of HNS family CH48_RS19805 SM00984 UDP binding domain CH48_RS19810 SM00448 cheY-homologous receiver domain CH48_RS19865 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH48_RS19865 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH48_RS19865 SM00493 CH48_RS19865 CH48_RS19885 SM00870 CH48_RS19885 CH48_RS19910 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH48_RS19925 SM00763 PrkA AAA domain CH48_RS19955 SM00052 Putative diguanylate phosphodiesterase CH48_RS19955 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH48_RS19955 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_RS19955 SM00091 PAS domain CH48_RS19955 SM00267 diguanylate cyclase CH48_RS19965 SM01005 Alanine racemase, C-terminal domain CH48_RS19980 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_RS20020 SM00836 DALR anticodon binding domain CH48_RS20020 SM01016 Arginyl tRNA synthetase N terminal dom CH48_RS20100 SM00382 ATPases associated with a variety of cellular activities CH48_RS20150 SM01007 Class II Aldolase and Adducin N-terminal domain CH48_RS20160 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_RS20160 SM01134 CH48_RS20160 CH48_RS20165 SM00387 Histidine kinase-like ATPases CH48_RS20170 SM00448 cheY-homologous receiver domain CH48_RS20230 SM00421 helix_turn_helix, Lux Regulon CH48_RS20305 SM00479 CH48_RS20305 CH48_RS20320 SM01022 CH48_RS20320 CH48_RS20330 SM00487 DEAD-like helicases superfamily CH48_RS20330 SM00490 helicase superfamily c-terminal domain CH48_RS20365 SM01091 Transporter associated domain CH48_RS20400 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_RS20400 SM00091 PAS domain CH48_RS20400 SM00267 diguanylate cyclase CH48_RS20425 SM00357 Cold shock protein domain CH48_RS20475 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS20495 SM00382 ATPases associated with a variety of cellular activities CH48_RS20500 SM00090 RIO-like kinase CH48_RS20515 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_RS20515 SM00091 PAS domain CH48_RS20515 SM00267 diguanylate cyclase CH48_RS20535 SM00342 helix_turn_helix, arabinose operon control protein CH48_RS20585 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_RS20585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_RS20595 SM00354 helix_turn _helix lactose operon repressor CH48_RS20600 SM00640 Glycosyl hydrolases family 32 CH48_RS20655 SM01329 CH48_RS20655 CH48_RS20690 SM00448 cheY-homologous receiver domain CH48_RS20690 SM00862 Transcriptional regulatory protein, C terminal CH48_RS20695 SM00387 Histidine kinase-like ATPases CH48_RS20695 SM00388 His Kinase A (phosphoacceptor) domain CH48_RS20700 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH48_RS20725 SM00382 ATPases associated with a variety of cellular activities CH48_RS20735 SM00487 DEAD-like helicases superfamily CH48_RS20735 SM00490 helicase superfamily c-terminal domain CH48_RS20735 SM00982 CH48_RS20735 CH48_RS20735 SM01058 CarD-like/TRCF domain CH48_RS20800 SM00382 ATPases associated with a variety of cellular activities CH48_RS20865 SM00912 haemagglutination activity domain CH48_RS20905 SM00822 CH48_RS20905