locus-tag class description LI89_RS00005 PF00258 Flavodoxin LI89_RS00010 PF01037 Lrp/AsnC ligand binding domain LI89_RS00015 PF03590 Aspartate-ammonia ligase LI89_RS00025 PF05762 VWA domain containing CoxE-like protein LI89_RS00030 PF12592 Protein of unknown function (DUF3763) LI89_RS00030 PF17868 AAA lid domain LI89_RS00030 PF07728 AAA domain (dynein-related subfamily) LI89_RS00035 PF02705 K+ potassium transporter LI89_RS00040 PF05025 RbsD / FucU transport protein family LI89_RS00045 PF00005 ABC transporter LI89_RS00050 PF02653 Branched-chain amino acid transport system / permease component LI89_RS00055 PF13407 Periplasmic binding protein domain LI89_RS00060 PF00294 pfkB family carbohydrate kinase LI89_RS00065 PF00356 Bacterial regulatory proteins, lacI family LI89_RS00070 PF07690 Major Facilitator Superfamily LI89_RS00075 PF00392 Bacterial regulatory proteins, gntR family LI89_RS00075 PF07729 FCD domain LI89_RS00100 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LI89_RS00105 PF12804 MobA-like NTP transferase domain LI89_RS00110 PF06288 Protein of unknown function (DUF1040) LI89_RS00115 PF01636 Phosphotransferase enzyme family LI89_RS00120 PF01323 DSBA-like thioredoxin domain LI89_RS00125 PF01367 5'-3' exonuclease, C-terminal SAM fold LI89_RS00125 PF01612 3'-5' exonuclease LI89_RS00125 PF00476 DNA polymerase family A LI89_RS00125 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LI89_RS00130 PF01926 50S ribosome-binding GTPase LI89_RS00135 PF04220 Der GTPase activator (YihI) LI89_RS00140 PF06969 HemN C-terminal domain LI89_RS00140 PF04055 Radical SAM superfamily LI89_RS00145 PF02954 Bacterial regulatory protein, Fis family LI89_RS00145 PF00072 Response regulator receiver domain LI89_RS00145 PF00158 Sigma-54 interaction domain LI89_RS00150 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS00150 PF00989 PAS fold LI89_RS00150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS00155 PF03951 Glutamine synthetase, beta-Grasp domain LI89_RS00155 PF00120 Glutamine synthetase, catalytic domain LI89_RS00160 PF00009 Elongation factor Tu GTP binding domain LI89_RS00160 PF03144 Elongation factor Tu domain 2 LI89_RS00160 PF00679 Elongation factor G C-terminus LI89_RS00165 PF13419 Haloacid dehalogenase-like hydrolase LI89_RS00170 PF03631 Virulence factor BrkB LI89_RS00175 PF02580 D-Tyr-tRNA(Tyr) deacylase LI89_RS00180 PF09500 Putative thioesterase (yiiD_Cterm) LI89_RS00180 PF00583 Acetyltransferase (GNAT) family LI89_RS00185 PF13693 Winged helix-turn-helix DNA-binding LI89_RS00205 PF05170 AsmA family LI89_RS00210 PF00860 Permease family LI89_RS00215 PF03616 Sodium/glutamate symporter LI89_RS00220 PF00271 Helicase conserved C-terminal domain LI89_RS00220 PF00270 DEAD/DEAH box helicase LI89_RS00220 PF17191 RecG wedge domain LI89_RS00225 PF12105 SpoU, rRNA methylase, C-terminal LI89_RS00225 PF00588 SpoU rRNA Methylase family LI89_RS00230 PF04607 Region found in RelA / SpoT proteins LI89_RS00230 PF13291 ACT domain LI89_RS00230 PF02824 TGS domain LI89_RS00235 PF01192 RNA polymerase Rpb6 LI89_RS00240 PF00625 Guanylate kinase LI89_RS00245 PF01653 NAD-dependent DNA ligase adenylation domain LI89_RS00245 PF03120 NAD-dependent DNA ligase OB-fold domain LI89_RS00250 PF03458 UPF0126 domain LI89_RS00260 PF07670 Nucleoside recognition LI89_RS00260 PF07662 Na+ dependent nucleoside transporter C-terminus LI89_RS00260 PF01773 Na+ dependent nucleoside transporter N-terminus LI89_RS00265 PF00378 Enoyl-CoA hydratase/isomerase LI89_RS00270 PF13426 PAS domain LI89_RS00270 PF00563 EAL domain LI89_RS00270 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS00285 PF03755 YicC-like family, N-terminal region LI89_RS00285 PF08340 Domain of unknown function (DUF1732) LI89_RS00290 PF01138 3' exoribonuclease family, domain 1 LI89_RS00290 PF03725 3' exoribonuclease family, domain 2 LI89_RS00295 PF00156 Phosphoribosyl transferase domain LI89_RS00300 PF00440 Bacterial regulatory proteins, tetR family LI89_RS00305 PF00692 dUTPase LI89_RS00310 PF02441 Flavoprotein LI89_RS00310 PF04127 DNA / pantothenate metabolism flavoprotein LI89_RS00315 PF04002 RadC-like JAB domain LI89_RS00320 PF00830 Ribosomal L28 family LI89_RS00325 PF00471 Ribosomal protein L33 LI89_RS00330 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LI89_RS00330 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LI89_RS00330 PF06827 Zinc finger found in FPG and IleRS LI89_RS00335 PF01467 Cytidylyltransferase-like LI89_RS00340 PF00535 Glycosyl transferase family 2 LI89_RS00345 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LI89_RS00350 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LI89_RS00355 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LI89_RS00360 PF01370 NAD dependent epimerase/dehydratase family LI89_RS00365 PF00155 Aminotransferase class I and II LI89_RS00370 PF00107 Zinc-binding dehydrogenase LI89_RS00370 PF08240 Alcohol dehydrogenase GroES-like domain LI89_RS00375 PF04748 Divergent polysaccharide deacetylase LI89_RS00380 PF01551 Peptidase family M23 LI89_RS00385 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LI89_RS00385 PF01676 Metalloenzyme superfamily LI89_RS00390 PF00581 Rhodanese-like domain LI89_RS00395 PF00462 Glutaredoxin LI89_RS00400 PF02556 Preprotein translocase subunit SecB LI89_RS00405 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LI89_RS00405 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LI89_RS00410 PF00132 Bacterial transferase hexapeptide (six repeats) LI89_RS00410 PF06426 Serine acetyltransferase, N-terminal LI89_RS00415 PF00588 SpoU rRNA Methylase family LI89_RS00420 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LI89_RS00420 PF02805 Metal binding domain of Ada LI89_RS00420 PF12833 Helix-turn-helix domain LI89_RS00420 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LI89_RS00425 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS00425 PF16527 Two-component sensor protein CpxA, periplasmic domain LI89_RS00425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS00425 PF00672 HAMP domain LI89_RS00430 PF00072 Response regulator receiver domain LI89_RS00430 PF00486 Transcriptional regulatory protein, C terminal LI89_RS00435 PF07813 LTXXQ motif family protein LI89_RS00440 PF16916 Dimerisation domain of Zinc Transporter LI89_RS00440 PF01545 Cation efflux family LI89_RS00445 PF00365 Phosphofructokinase LI89_RS00460 PF00121 Triosephosphate isomerase LI89_RS00465 PF07305 Protein of unknown function (DUF1454) LI89_RS00470 PF05656 Protein of unknown function (DUF805) LI89_RS00475 PF00175 Oxidoreductase NAD-binding domain LI89_RS00475 PF00970 Oxidoreductase FAD-binding domain LI89_RS00480 PF07690 Major Facilitator Superfamily LI89_RS00485 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LI89_RS00490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LI89_RS00490 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LI89_RS00495 PF00230 Major intrinsic protein LI89_RS00505 PF06005 Cell division protein ZapB LI89_RS00510 PF03737 Aldolase/RraA LI89_RS00515 PF01040 UbiA prenyltransferase family LI89_RS00520 PF10431 C-terminal, D2-small domain, of ClpB protein LI89_RS00520 PF07724 AAA domain (Cdc48 subfamily) LI89_RS00520 PF00004 ATPase family associated with various cellular activities (AAA) LI89_RS00525 PF00227 Proteasome subunit LI89_RS00530 PF05036 Sporulation related domain LI89_RS00535 PF00356 Bacterial regulatory proteins, lacI family LI89_RS00540 PF00271 Helicase conserved C-terminal domain LI89_RS00540 PF17764 3′ DNA-binding domain (3′BD) LI89_RS00540 PF18074 Primosomal protein N C-terminal domain LI89_RS00540 PF00270 DEAD/DEAH box helicase LI89_RS00540 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LI89_RS00545 PF01197 Ribosomal protein L31 LI89_RS00550 PF01340 Met Apo-repressor, MetJ LI89_RS00555 PF01053 Cys/Met metabolism PLP-dependent enzyme LI89_RS00560 PF00742 Homoserine dehydrogenase LI89_RS00560 PF00696 Amino acid kinase family LI89_RS00560 PF03447 Homoserine dehydrogenase, NAD binding domain LI89_RS00565 PF02219 Methylenetetrahydrofolate reductase LI89_RS00570 PF00311 Phosphoenolpyruvate carboxylase LI89_RS00575 PF07687 Peptidase dimerisation domain LI89_RS00575 PF01546 Peptidase family M20/M25/M40 LI89_RS00580 PF02774 Semialdehyde dehydrogenase, dimerisation domain LI89_RS00580 PF01118 Semialdehyde dehydrogenase, NAD binding domain LI89_RS00585 PF00696 Amino acid kinase family LI89_RS00590 PF14698 Argininosuccinate lyase C-terminal LI89_RS00590 PF00206 Lyase LI89_RS00595 PF07715 TonB-dependent Receptor Plug Domain LI89_RS00595 PF00593 TonB dependent receptor LI89_RS00620 PF00005 ABC transporter LI89_RS00620 PF00664 ABC transporter transmembrane region LI89_RS00625 PF00529 HlyD membrane-fusion protein of T1SS LI89_RS00635 PF07992 Pyridine nucleotide-disulphide oxidoreductase LI89_RS00635 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LI89_RS00640 PF00462 Glutaredoxin LI89_RS00640 PF08534 Redoxin LI89_RS00645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS00645 PF03466 LysR substrate binding domain LI89_RS00650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LI89_RS00650 PF07992 Pyridine nucleotide-disulphide oxidoreductase LI89_RS00655 PF00440 Bacterial regulatory proteins, tetR family LI89_RS00660 PF07226 Protein of unknown function (DUF1422) LI89_RS00665 PF05958 tRNA (Uracil-5-)-methyltransferase LI89_RS00670 PF00593 TonB dependent receptor LI89_RS00670 PF07715 TonB-dependent Receptor Plug Domain LI89_RS00675 PF01177 Asp/Glu/Hydantoin racemase LI89_RS00705 PF10043 Predicted periplasmic lipoprotein (DUF2279) LI89_RS00710 PF13091 PLD-like domain LI89_RS00730 PF01177 Asp/Glu/Hydantoin racemase LI89_RS00770 PF13407 Periplasmic binding protein domain LI89_RS00775 PF00005 ABC transporter LI89_RS00780 PF02653 Branched-chain amino acid transport system / permease component LI89_RS00785 PF02653 Branched-chain amino acid transport system / permease component LI89_RS00790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS00790 PF03466 LysR substrate binding domain LI89_RS00795 PF04219 Protein of unknown function, DUF LI89_RS00800 PF13335 Magnesium chelatase, subunit ChlI C-terminal LI89_RS00800 PF01078 Magnesium chelatase, subunit ChlI LI89_RS00805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LI89_RS00805 PF00205 Thiamine pyrophosphate enzyme, central domain LI89_RS00805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LI89_RS00815 PF01063 Amino-transferase class IV LI89_RS00820 PF00920 Dehydratase family LI89_RS00825 PF00585 C-terminal regulatory domain of Threonine dehydratase LI89_RS00825 PF00291 Pyridoxal-phosphate dependent enzyme LI89_RS00835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS00835 PF03466 LysR substrate binding domain LI89_RS00840 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LI89_RS00840 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LI89_RS00855 PF03513 Cloacin immunity protein LI89_RS00860 PF01320 Colicin immunity protein / pyocin immunity protein LI89_RS00865 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS00865 PF02753 Pili assembly chaperone PapD, C-terminal domain LI89_RS00875 PF13954 PapC N-terminal domain LI89_RS00875 PF13953 PapC C-terminal domain LI89_RS00875 PF00577 Outer membrane usher protein LI89_RS00880 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS00880 PF02753 Pili assembly chaperone PapD, C-terminal domain LI89_RS00895 PF13361 UvrD-like helicase C-terminal domain LI89_RS00895 PF00580 UvrD/REP helicase N-terminal domain LI89_RS00900 PF00295 Glycosyl hydrolases family 28 LI89_RS00905 PF02541 Ppx/GppA phosphatase family LI89_RS00910 PF00270 DEAD/DEAH box helicase LI89_RS00910 PF00271 Helicase conserved C-terminal domain LI89_RS00915 PF00085 Thioredoxin LI89_RS00920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LI89_RS00920 PF07497 Rho termination factor, RNA-binding domain LI89_RS00920 PF07498 Rho termination factor, N-terminal domain LI89_RS00925 PF00953 Glycosyl transferase family 4 LI89_RS00930 PF02706 Chain length determinant protein LI89_RS00935 PF02350 UDP-N-acetylglucosamine 2-epimerase LI89_RS00940 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LI89_RS00940 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LI89_RS00940 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LI89_RS00945 PF16363 GDP-mannose 4,6 dehydratase LI89_RS00950 PF00483 Nucleotidyl transferase LI89_RS00960 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LI89_RS00965 PF01943 Polysaccharide biosynthesis protein LI89_RS00970 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 LI89_RS00975 PF06899 WzyE protein, O-antigen assembly polymerase LI89_RS00980 PF03808 Glycosyl transferase WecB/TagA/CpsF family LI89_RS00985 PF00324 Amino acid permease LI89_RS01010 PF07219 HemY protein N-terminus LI89_RS01010 PF07719 Tetratricopeptide repeat LI89_RS01015 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LI89_RS01020 PF02602 Uroporphyrinogen-III synthase HemD LI89_RS01025 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LI89_RS01025 PF03900 Porphobilinogen deaminase, C-terminal domain LI89_RS01030 PF01295 Adenylate cyclase, class-I LI89_RS01030 PF12633 Adenylate cyclase NT domain LI89_RS01035 PF01491 Frataxin-like domain LI89_RS01040 PF13627 Prokaryotic lipoprotein-attachment site LI89_RS01045 PF01678 Diaminopimelate epimerase LI89_RS01050 PF04340 Protein of unknown function, DUF484 LI89_RS01055 PF00589 Phage integrase family LI89_RS01055 PF02899 Phage integrase, N-terminal SAM-like domain LI89_RS01060 PF13419 Haloacid dehalogenase-like hydrolase LI89_RS01065 PF13361 UvrD-like helicase C-terminal domain LI89_RS01065 PF00580 UvrD/REP helicase N-terminal domain LI89_RS01080 PF09370 Phosphoenolpyruvate hydrolase-like LI89_RS01085 PF01544 CorA-like Mg2+ transporter protein LI89_RS01090 PF00892 EamA-like transporter family LI89_RS01095 PF03061 Thioesterase superfamily LI89_RS01100 PF02253 Phospholipase A1 LI89_RS01105 PF09382 RQC domain LI89_RS01105 PF00271 Helicase conserved C-terminal domain LI89_RS01105 PF00570 HRDC domain LI89_RS01105 PF16124 RecQ zinc-binding LI89_RS01105 PF00270 DEAD/DEAH box helicase LI89_RS01110 PF01810 LysE type translocator LI89_RS01115 PF01810 LysE type translocator LI89_RS01120 PF12146 Serine aminopeptidase, S33 LI89_RS01130 PF03009 Glycerophosphoryl diester phosphodiesterase family LI89_RS01135 PF07690 Major Facilitator Superfamily LI89_RS01140 PF04324 BFD-like [2Fe-2S] binding domain LI89_RS01140 PF01266 FAD dependent oxidoreductase LI89_RS01145 PF00890 FAD binding domain LI89_RS01150 PF13183 4Fe-4S dicluster domain LI89_RS01150 PF02754 Cysteine-rich domain LI89_RS01155 PF08786 DcrB LI89_RS01160 PF02592 Putative vitamin uptake transporter LI89_RS01165 PF01206 Sulfurtransferase TusA LI89_RS01170 PF00403 Heavy-metal-associated domain LI89_RS01175 PF07947 YhhN family LI89_RS01190 PF06611 Protein of unknown function (DUF1145) LI89_RS01200 PF00448 SRP54-type protein, GTPase domain LI89_RS01200 PF02881 SRP54-type protein, helical bundle domain LI89_RS01205 PF00005 ABC transporter LI89_RS01210 PF18075 FtsX extracellular domain LI89_RS01210 PF02687 FtsX-like permease family LI89_RS01215 PF04545 Sigma-70, region 4 LI89_RS01215 PF00140 Sigma-70 factor, region 1.2 LI89_RS01215 PF04542 Sigma-70 region 2 LI89_RS01220 PF12568 Acetyltransferase (GNAT) domain, PanZ LI89_RS01225 PF13458 Periplasmic binding protein LI89_RS01230 PF02653 Branched-chain amino acid transport system / permease component LI89_RS01235 PF02653 Branched-chain amino acid transport system / permease component LI89_RS01235 PF11862 Domain of unknown function (DUF3382) LI89_RS01240 PF12399 Branched-chain amino acid ATP-binding cassette transporter LI89_RS01240 PF00005 ABC transporter LI89_RS01245 PF00005 ABC transporter LI89_RS01280 PF13416 Bacterial extracellular solute-binding protein LI89_RS01285 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS01290 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS01295 PF00005 ABC transporter LI89_RS01295 PF17912 MalK OB fold domain LI89_RS01300 PF03009 Glycerophosphoryl diester phosphodiesterase family LI89_RS01305 PF03547 Membrane transport protein LI89_RS01310 PF00892 EamA-like transporter family LI89_RS01315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS01315 PF03466 LysR substrate binding domain LI89_RS01320 PF01717 Cobalamin-independent synthase, Catalytic domain LI89_RS01320 PF08267 Cobalamin-independent synthase, N-terminal domain LI89_RS01325 PF01738 Dienelactone hydrolase family LI89_RS01330 PF01048 Phosphorylase superfamily LI89_RS01340 PF02554 Carbon starvation protein CstA LI89_RS01340 PF13722 5TM C-terminal transporter carbon starvation CstA LI89_RS01345 PF09335 SNARE associated Golgi protein LI89_RS01350 PF02646 RmuC family LI89_RS01355 PF01209 ubiE/COQ5 methyltransferase family LI89_RS01360 PF02036 SCP-2 sterol transfer family LI89_RS01365 PF03109 ABC1 family LI89_RS01370 PF02416 mttA/Hcf106 family LI89_RS01380 PF00902 Sec-independent protein translocase protein (TatC) LI89_RS01385 PF01026 TatD related DNase LI89_RS01390 PF00490 Delta-aminolevulinic acid dehydratase LI89_RS01395 PF02357 Transcription termination factor nusG LI89_RS01400 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LI89_RS01405 PF00970 Oxidoreductase FAD-binding domain LI89_RS01405 PF00175 Oxidoreductase NAD-binding domain LI89_RS01410 PF00108 Thiolase, N-terminal domain LI89_RS01410 PF02803 Thiolase, C-terminal domain LI89_RS01415 PF00378 Enoyl-CoA hydratase/isomerase LI89_RS01415 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LI89_RS01415 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LI89_RS01420 PF00557 Metallopeptidase family M24 LI89_RS01425 PF09186 Domain of unknown function (DUF1949) LI89_RS01425 PF01205 Uncharacterized protein family UPF0029 LI89_RS01430 PF02386 Cation transport protein LI89_RS01435 PF12724 Flavodoxin domain LI89_RS01460 PF01565 FAD binding domain LI89_RS01460 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LI89_RS01465 PF02237 Biotin protein ligase C terminal domain LI89_RS01465 PF08279 HTH domain LI89_RS01465 PF03099 Biotin/lipoate A/B protein ligase family LI89_RS01470 PF00485 Phosphoribulokinase / Uridine kinase family LI89_RS01475 PF13673 Acetyltransferase (GNAT) domain LI89_RS01505 PF03143 Elongation factor Tu C-terminal domain LI89_RS01505 PF00009 Elongation factor Tu GTP binding domain LI89_RS01505 PF03144 Elongation factor Tu domain 2 LI89_RS01510 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LI89_RS01515 PF00467 KOW motif LI89_RS01515 PF02357 Transcription termination factor nusG LI89_RS01520 PF00298 Ribosomal protein L11, RNA binding domain LI89_RS01520 PF03946 Ribosomal protein L11, N-terminal domain LI89_RS01525 PF00687 Ribosomal protein L1p/L10e family LI89_RS01530 PF00466 Ribosomal protein L10 LI89_RS01535 PF00542 Ribosomal protein L7/L12 C-terminal domain LI89_RS01535 PF16320 Ribosomal protein L7/L12 dimerisation domain LI89_RS01540 PF04563 RNA polymerase beta subunit LI89_RS01540 PF04561 RNA polymerase Rpb2, domain 2 LI89_RS01540 PF04565 RNA polymerase Rpb2, domain 3 LI89_RS01540 PF10385 RNA polymerase beta subunit external 1 domain LI89_RS01540 PF00562 RNA polymerase Rpb2, domain 6 LI89_RS01540 PF04560 RNA polymerase Rpb2, domain 7 LI89_RS01545 PF04998 RNA polymerase Rpb1, domain 5 LI89_RS01545 PF05000 RNA polymerase Rpb1, domain 4 LI89_RS01545 PF04997 RNA polymerase Rpb1, domain 1 LI89_RS01545 PF04983 RNA polymerase Rpb1, domain 3 LI89_RS01545 PF00623 RNA polymerase Rpb1, domain 2 LI89_RS01550 PF04055 Radical SAM superfamily LI89_RS01550 PF06968 Biotin and Thiamin Synthesis associated domain LI89_RS01555 PF05690 Thiazole biosynthesis protein ThiG LI89_RS01560 PF02597 ThiS family LI89_RS01565 PF00899 ThiF family LI89_RS01570 PF02581 Thiamine monophosphate synthase LI89_RS01575 PF13667 ThiC-associated domain LI89_RS01575 PF01964 Radical SAM ThiC family LI89_RS01580 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LI89_RS01585 PF09297 NADH pyrophosphatase zinc ribbon domain LI89_RS01585 PF00293 NUDIX domain LI89_RS01595 PF01208 Uroporphyrinogen decarboxylase (URO-D) LI89_RS01600 PF04493 Endonuclease V LI89_RS01605 PF04222 Protein of unknown function (DUF416) LI89_RS01610 PF00216 Bacterial DNA-binding protein LI89_RS01615 PF07356 Protein of unknown function (DUF1481) LI89_RS01620 PF02844 Phosphoribosylglycinamide synthetase, N domain LI89_RS01620 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LI89_RS01620 PF02843 Phosphoribosylglycinamide synthetase, C domain LI89_RS01625 PF01808 AICARFT/IMPCHase bienzyme LI89_RS01625 PF02142 MGS-like domain LI89_RS01675 PF00474 Sodium:solute symporter family LI89_RS01680 PF04341 Protein of unknown function, DUF485 LI89_RS01685 PF00501 AMP-binding enzyme LI89_RS01685 PF16177 Acetyl-coenzyme A synthetase N-terminus LI89_RS01685 PF13193 AMP-binding enzyme C-terminal domain LI89_RS01690 PF00375 Sodium:dicarboxylate symporter family LI89_RS01695 PF00072 Response regulator receiver domain LI89_RS01695 PF00196 Bacterial regulatory proteins, luxR family LI89_RS01700 PF00072 Response regulator receiver domain LI89_RS01700 PF09456 RcsC Alpha-Beta-Loop (ABL) LI89_RS01700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS01700 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS01710 PF00263 Bacterial type II and III secretion system protein LI89_RS01710 PF03958 Bacterial type II/III secretion system short domain LI89_RS01730 PF03433 EspA-like secreted protein LI89_RS01740 PF04888 Secretion system effector C (SseC) like family LI89_RS01765 PF12833 Helix-turn-helix domain LI89_RS01765 PF14525 AraC-binding-like domain LI89_RS01785 PF01514 Secretory protein of YscJ/FliF family LI89_RS01800 PF07201 HrpJ-like domain LI89_RS01810 PF00771 FHIPEP family LI89_RS01815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LI89_RS01815 PF18269 T3SS EscN ATPase C-terminal domain LI89_RS01830 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LI89_RS01835 PF00813 FliP family LI89_RS01840 PF01313 Bacterial export proteins, family 3 LI89_RS01845 PF01311 Bacterial export proteins, family 1 LI89_RS01850 PF01312 FlhB HrpN YscU SpaS Family LI89_RS01855 PF04143 Sulphur transport LI89_RS01860 PF01206 Sulfurtransferase TusA LI89_RS01875 PF04773 FecR protein LI89_RS01875 PF16220 Domain of unknown function (DUF4880) LI89_RS01880 PF07715 TonB-dependent Receptor Plug Domain LI89_RS01885 PF00005 ABC transporter LI89_RS01885 PF06472 ABC transporter transmembrane region 2 LI89_RS01890 PF00675 Insulinase (Peptidase family M16) LI89_RS01890 PF05193 Peptidase M16 inactive domain LI89_RS01895 PF12794 Mechanosensitive ion channel inner membrane domain 1 LI89_RS01895 PF00924 Mechanosensitive ion channel LI89_RS01895 PF12795 Mechanosensitive ion channel porin domain LI89_RS01900 PF07715 TonB-dependent Receptor Plug Domain LI89_RS01900 PF00593 TonB dependent receptor LI89_RS01910 PF00155 Aminotransferase class I and II LI89_RS01910 PF00392 Bacterial regulatory proteins, gntR family LI89_RS01915 PF00005 ABC transporter LI89_RS01920 PF01032 FecCD transport family LI89_RS01925 PF01497 Periplasmic binding protein LI89_RS01930 PF05171 Haemin-degrading HemS.ChuX domain LI89_RS01935 PF07715 TonB-dependent Receptor Plug Domain LI89_RS01935 PF00593 TonB dependent receptor LI89_RS01940 PF10636 Hemin uptake protein hemP LI89_RS01945 PF13460 NAD(P)H-binding LI89_RS01950 PF06228 Haem utilisation ChuX/HutX LI89_RS01955 PF04055 Radical SAM superfamily LI89_RS01960 PF00291 Pyridoxal-phosphate dependent enzyme LI89_RS01965 PF01490 Transmembrane amino acid transporter protein LI89_RS01970 PF00871 Acetokinase family LI89_RS01975 PF01228 Glycine radical LI89_RS01975 PF02901 Pyruvate formate lyase-like LI89_RS01990 PF02595 Glycerate kinase family LI89_RS01995 PF02683 Cytochrome C biogenesis protein transmembrane region LI89_RS01995 PF11412 Disulphide bond corrector protein DsbC LI89_RS02000 PF03091 CutA1 divalent ion tolerance protein LI89_RS02005 PF03605 Anaerobic c4-dicarboxylate membrane transporter LI89_RS02010 PF00206 Lyase LI89_RS02010 PF10415 Fumarase C C-terminus LI89_RS02015 PF04186 FxsA cytoplasmic membrane protein LI89_RS02020 PF00166 Chaperonin 10 Kd subunit LI89_RS02025 PF00118 TCP-1/cpn60 chaperonin family LI89_RS02035 PF13698 Domain of unknown function (DUF4156) LI89_RS02040 PF04055 Radical SAM superfamily LI89_RS02045 PF01132 Elongation factor P (EF-P) OB domain LI89_RS02045 PF09285 Elongation factor P, C-terminal LI89_RS02045 PF08207 Elongation factor P (EF-P) KOW-like domain LI89_RS02050 PF08085 Entericidin EcnA/B family LI89_RS02055 PF00893 Small Multidrug Resistance protein LI89_RS02060 PF08212 Lipocalin-like domain LI89_RS02065 PF02313 Fumarate reductase subunit D LI89_RS02070 PF02300 Fumarate reductase subunit C LI89_RS02075 PF13085 2Fe-2S iron-sulfur cluster binding domain LI89_RS02075 PF13183 4Fe-4S dicluster domain LI89_RS02080 PF00890 FAD binding domain LI89_RS02080 PF02910 Fumarate reductase flavoprotein C-term LI89_RS02085 PF00152 tRNA synthetases class II (D, K and N) LI89_RS02090 PF00924 Mechanosensitive ion channel LI89_RS02090 PF12794 Mechanosensitive ion channel inner membrane domain 1 LI89_RS02090 PF12795 Mechanosensitive ion channel porin domain LI89_RS02095 PF02666 Phosphatidylserine decarboxylase LI89_RS02100 PF03193 RsgA GTPase LI89_RS02105 PF00929 Exonuclease LI89_RS02125 PF08331 Domain of unknown function (DUF1730) LI89_RS02130 PF03853 YjeF-related protein N-terminus LI89_RS02130 PF01256 Carbohydrate kinase LI89_RS02135 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LI89_RS02140 PF01520 N-acetylmuramoyl-L-alanine amidase LI89_RS02145 PF01119 DNA mismatch repair protein, C-terminal domain LI89_RS02145 PF08676 MutL C terminal dimerisation domain LI89_RS02155 PF17209 Hfq protein LI89_RS02160 PF16360 GTP-binding GTPase Middle Region LI89_RS02160 PF01926 50S ribosome-binding GTPase LI89_RS02160 PF13167 GTP-binding GTPase N-terminal LI89_RS02165 PF01145 SPFH domain / Band 7 family LI89_RS02165 PF12221 Bacterial membrane protein N terminal LI89_RS02170 PF01145 SPFH domain / Band 7 family LI89_RS02175 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LI89_RS02180 PF00709 Adenylosuccinate synthetase LI89_RS02185 PF02082 Transcriptional regulator LI89_RS02190 PF00773 RNB domain LI89_RS02190 PF08461 Ribonuclease R winged-helix domain LI89_RS02190 PF17876 Cold shock domain LI89_RS02190 PF08206 Ribonuclease B OB domain LI89_RS02190 PF00575 S1 RNA binding domain LI89_RS02195 PF08032 RNA 2'-O ribose methyltransferase substrate binding LI89_RS02195 PF00588 SpoU rRNA Methylase family LI89_RS02200 PF02770 Acyl-CoA dehydrogenase, middle domain LI89_RS02200 PF18158 Adaptive response protein AidB N-terminal domain LI89_RS02200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LI89_RS02205 PF07338 Protein of unknown function (DUF1471) LI89_RS02210 PF00326 Prolyl oligopeptidase family LI89_RS02220 PF01250 Ribosomal protein S6 LI89_RS02225 PF00436 Single-strand binding protein family LI89_RS02230 PF01084 Ribosomal protein S18 LI89_RS02235 PF03948 Ribosomal protein L9, C-terminal domain LI89_RS02235 PF01281 Ribosomal protein L9, N-terminal domain LI89_RS02245 PF04225 Opacity-associated protein A LysM-like domain LI89_RS02245 PF08525 Opacity-associated protein A N-terminal motif LI89_RS02250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LI89_RS02250 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LI89_RS02255 PF04405 Domain of Unknown function (DUF542) LI89_RS02255 PF01814 Hemerythrin HHE cation binding domain LI89_RS02260 PF02872 5'-nucleotidase, C-terminal domain LI89_RS02260 PF00149 Calcineurin-like phosphoesterase LI89_RS02265 PF00459 Inositol monophosphatase family LI89_RS02270 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LI89_RS02275 PF06526 Protein of unknown function (DUF1107) LI89_RS02280 PF01595 Cyclin M transmembrane N-terminal domain LI89_RS02280 PF00571 CBS domain LI89_RS02280 PF03471 Transporter associated domain LI89_RS02285 PF01625 Peptide methionine sulfoxide reductase LI89_RS02290 PF01103 Surface antigen LI89_RS02290 PF17243 POTRA domain TamA domain 1 LI89_RS02290 PF07244 Surface antigen variable number repeat LI89_RS02295 PF04357 TamB, inner membrane protein subunit of TAM complex LI89_RS02300 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LI89_RS02305 PF00719 Inorganic pyrophosphatase LI89_RS02310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LI89_RS02310 PF00672 HAMP domain LI89_RS02310 PF02203 Tar ligand binding domain homologue LI89_RS02315 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LI89_RS02320 PF01225 Mur ligase family, catalytic domain LI89_RS02320 PF02875 Mur ligase family, glutamate ligase domain LI89_RS02320 PF08245 Mur ligase middle domain LI89_RS02330 PF02863 Arginine repressor, C-terminal domain LI89_RS02330 PF01316 Arginine repressor, DNA binding domain LI89_RS02335 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LI89_RS02335 PF00056 lactate/malate dehydrogenase, NAD binding domain LI89_RS02340 PF13693 Winged helix-turn-helix DNA-binding LI89_RS02350 PF00348 Polyprenyl synthetase LI89_RS02355 PF00829 Ribosomal prokaryotic L21 protein LI89_RS02360 PF01016 Ribosomal L27 protein LI89_RS02365 PF00892 EamA-like transporter family LI89_RS02370 PF01926 50S ribosome-binding GTPase LI89_RS02370 PF01018 GTP1/OBG LI89_RS02375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS02375 PF00672 HAMP domain LI89_RS02375 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS02380 PF00486 Transcriptional regulatory protein, C terminal LI89_RS02380 PF00072 Response regulator receiver domain LI89_RS02385 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LI89_RS02390 PF03449 Transcription elongation factor, N-terminal LI89_RS02390 PF01272 Transcription elongation factor, GreA/GreB, C-term LI89_RS02395 PF01985 CRS1 / YhbY (CRM) domain LI89_RS02400 PF01728 FtsJ-like methyltransferase LI89_RS02405 PF00004 ATPase family associated with various cellular activities (AAA) LI89_RS02405 PF06480 FtsH Extracellular LI89_RS02405 PF17862 AAA+ lid domain LI89_RS02405 PF01434 Peptidase family M41 LI89_RS02410 PF00809 Pterin binding enzyme LI89_RS02415 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LI89_RS02415 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LI89_RS02415 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LI89_RS02415 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LI89_RS02420 PF03840 Preprotein translocase SecG subunit LI89_RS02435 PF02576 RimP N-terminal domain LI89_RS02435 PF17384 RimP C-terminal SH3 domain LI89_RS02440 PF08529 NusA N-terminal domain LI89_RS02440 PF00575 S1 RNA binding domain LI89_RS02440 PF13184 NusA-like KH domain LI89_RS02445 PF08364 Bacterial translation initiation factor IF-2 associated region LI89_RS02445 PF11987 Translation-initiation factor 2 LI89_RS02445 PF04760 Translation initiation factor IF-2, N-terminal region LI89_RS02445 PF00009 Elongation factor Tu GTP binding domain LI89_RS02445 PF03144 Elongation factor Tu domain 2 LI89_RS02450 PF02033 Ribosome-binding factor A LI89_RS02455 PF01509 TruB family pseudouridylate synthase (N terminal domain) LI89_RS02455 PF16198 tRNA pseudouridylate synthase B C-terminal domain LI89_RS02455 PF09157 Pseudouridine synthase II TruB, C-terminal LI89_RS02460 PF00312 Ribosomal protein S15 LI89_RS02465 PF00575 S1 RNA binding domain LI89_RS02465 PF01138 3' exoribonuclease family, domain 1 LI89_RS02465 PF00013 KH domain LI89_RS02465 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LI89_RS02465 PF03725 3' exoribonuclease family, domain 2 LI89_RS02470 PF13181 Tetratricopeptide repeat LI89_RS02470 PF07719 Tetratricopeptide repeat LI89_RS02475 PF00270 DEAD/DEAH box helicase LI89_RS02475 PF00271 Helicase conserved C-terminal domain LI89_RS02475 PF03880 DbpA RNA binding domain LI89_RS02475 PF12343 Cold shock protein DEAD box A LI89_RS02485 PF00296 Luciferase-like monooxygenase LI89_RS02490 PF00529 HlyD membrane-fusion protein of T1SS LI89_RS02490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LI89_RS02495 PF00873 AcrB/AcrD/AcrF family LI89_RS02500 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LI89_RS02500 PF02321 Outer membrane efflux protein LI89_RS02510 PF03313 Serine dehydratase alpha chain LI89_RS02515 PF01136 Peptidase family U32 LI89_RS02520 PF01136 Peptidase family U32 LI89_RS02525 PF02036 SCP-2 sterol transfer family LI89_RS02530 PF13508 Acetyltransferase (GNAT) domain LI89_RS02535 PF01541 GIY-YIG catalytic domain LI89_RS02540 PF13520 Amino acid permease LI89_RS02545 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LI89_RS02545 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LI89_RS02545 PF01276 Orn/Lys/Arg decarboxylase, major domain LI89_RS02550 PF05426 Alginate lyase LI89_RS02550 PF07940 Heparinase II/III-like protein LI89_RS02560 PF13416 Bacterial extracellular solute-binding protein LI89_RS02565 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS02570 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS02575 PF03459 TOBE domain LI89_RS02575 PF17912 MalK OB fold domain LI89_RS02575 PF00005 ABC transporter LI89_RS02595 PF13460 NAD(P)H-binding LI89_RS02600 PF12706 Beta-lactamase superfamily domain LI89_RS02610 PF07969 Amidohydrolase family LI89_RS02615 PF00005 ABC transporter LI89_RS02620 PF00005 ABC transporter LI89_RS02625 PF06007 Phosphonate metabolism protein PhnJ LI89_RS02630 PF05861 Bacterial phosphonate metabolism protein (PhnI) LI89_RS02635 PF05845 Bacterial phosphonate metabolism protein (PhnH) LI89_RS02665 PF13597 Anaerobic ribonucleoside-triphosphate reductase LI89_RS02665 PF03477 ATP cone domain LI89_RS02670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS02670 PF03466 LysR substrate binding domain LI89_RS02675 PF02525 Flavodoxin-like fold LI89_RS02690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LI89_RS02690 PF00005 ABC transporter LI89_RS02695 PF00005 ABC transporter LI89_RS02695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LI89_RS02700 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS02700 PF12911 N-terminal TM domain of oligopeptide transport permease C LI89_RS02705 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS02715 PF04074 YhcH/YjgK/YiaL LI89_RS02720 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LI89_RS02720 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LI89_RS02725 PF06877 Regulator of ribonuclease activity B LI89_RS02730 PF00583 Acetyltransferase (GNAT) family LI89_RS02735 PF08264 Anticodon-binding domain of tRNA LI89_RS02735 PF00133 tRNA synthetases class I (I, L, M and V) LI89_RS02735 PF10458 Valyl tRNA synthetase tRNA binding arm LI89_RS02740 PF04364 DNA polymerase III chi subunit, HolC LI89_RS02745 PF02789 Cytosol aminopeptidase family, N-terminal domain LI89_RS02745 PF00883 Cytosol aminopeptidase family, catalytic domain LI89_RS02750 PF03739 Lipopolysaccharide export system permease LptF/LptG LI89_RS02755 PF03739 Lipopolysaccharide export system permease LptF/LptG LI89_RS02765 PF00589 Phage integrase family LI89_RS02765 PF13356 Arm DNA-binding domain LI89_RS02770 PF01555 DNA methylase LI89_RS02770 PF18273 Type III R-M EcoP15I C-terminal domain LI89_RS02775 PF08774 VRR-NUC domain LI89_RS02775 PF04851 Type III restriction enzyme, res subunit LI89_RS02785 PF04917 Bacterial shufflon protein, N-terminal constant region LI89_RS02800 PF01443 Viral (Superfamily 1) RNA helicase LI89_RS02800 PF03389 MobA/MobL family LI89_RS02800 PF17841 BID domain of Bartonella effector protein (Bep) LI89_RS02855 PF00583 Acetyltransferase (GNAT) family LI89_RS02880 PF10696 Protein of unknown function (DUF2501) LI89_RS02890 PF03992 Antibiotic biosynthesis monooxygenase LI89_RS02895 PF01791 DeoC/LacD family aldolase LI89_RS02900 PF13407 Periplasmic binding protein domain LI89_RS02905 PF02653 Branched-chain amino acid transport system / permease component LI89_RS02910 PF02653 Branched-chain amino acid transport system / permease component LI89_RS02915 PF00005 ABC transporter LI89_RS02920 PF04198 Putative sugar-binding domain LI89_RS02920 PF00325 Bacterial regulatory proteins, crp family LI89_RS02925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LI89_RS02925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LI89_RS02930 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LI89_RS02940 PF13520 Amino acid permease LI89_RS02950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LI89_RS02955 PF00873 AcrB/AcrD/AcrF family LI89_RS02960 PF00465 Iron-containing alcohol dehydrogenase LI89_RS02965 PF02733 Dak1 domain LI89_RS02970 PF02734 DAK2 domain LI89_RS02975 PF00381 PTS HPr component phosphorylation site LI89_RS02975 PF00391 PEP-utilising enzyme, mobile domain LI89_RS02975 PF05524 PEP-utilising enzyme, N-terminal LI89_RS02975 PF03610 PTS system fructose IIA component LI89_RS02985 PF16861 Carbamoyltransferase C-terminus LI89_RS02985 PF02543 Carbamoyltransferase N-terminus LI89_RS03010 PF01095 Pectinesterase LI89_RS03015 PF00989 PAS fold LI89_RS03015 PF02954 Bacterial regulatory protein, Fis family LI89_RS03015 PF00158 Sigma-54 interaction domain LI89_RS03020 PF00356 Bacterial regulatory proteins, lacI family LI89_RS03025 PF00251 Glycosyl hydrolases family 32 N-terminal domain LI89_RS03025 PF08244 Glycosyl hydrolases family 32 C terminal LI89_RS03030 PF00367 phosphotransferase system, EIIB LI89_RS03030 PF02378 Phosphotransferase system, EIIC LI89_RS03035 PF11471 Maltoporin periplasmic N-terminal extension LI89_RS03035 PF02264 LamB porin LI89_RS03040 PF00294 pfkB family carbohydrate kinase LI89_RS03050 PF00593 TonB dependent receptor LI89_RS03050 PF07660 Secretin and TonB N terminus short domain LI89_RS03050 PF07715 TonB-dependent Receptor Plug Domain LI89_RS03055 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS03060 PF07256 Protein of unknown function (DUF1435) LI89_RS03075 PF03466 LysR substrate binding domain LI89_RS03075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS03080 PF00248 Aldo/keto reductase family LI89_RS03085 PF05175 Methyltransferase small domain LI89_RS03085 PF08468 Methyltransferase small domain N-terminal LI89_RS03090 PF03603 DNA polymerase III psi subunit LI89_RS03095 PF00583 Acetyltransferase (GNAT) family LI89_RS03100 PF16658 Class II release factor RF3, C-terminal domain LI89_RS03100 PF03144 Elongation factor Tu domain 2 LI89_RS03100 PF00009 Elongation factor Tu GTP binding domain LI89_RS03105 PF04972 BON domain LI89_RS03110 PF01734 Patatin-like phospholipase LI89_RS03115 PF01026 TatD related DNase LI89_RS03120 PF07670 Nucleoside recognition LI89_RS03120 PF07662 Na+ dependent nucleoside transporter C-terminus LI89_RS03120 PF01773 Na+ dependent nucleoside transporter N-terminus LI89_RS03125 PF01791 DeoC/LacD family aldolase LI89_RS03130 PF00591 Glycosyl transferase family, a/b domain LI89_RS03130 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LI89_RS03130 PF02885 Glycosyl transferase family, helical bundle domain LI89_RS03135 PF01676 Metalloenzyme superfamily LI89_RS03140 PF01048 Phosphorylase superfamily LI89_RS03145 PF10144 Bacterial virulence factor haemolysin LI89_RS03150 PF18429 Domain of unknown function (DUF5609) LI89_RS03155 PF18073 Rubredoxin metal binding domain LI89_RS03165 PF01548 Transposase LI89_RS03165 PF02371 Transposase IS116/IS110/IS902 family LI89_RS03175 PF01381 Helix-turn-helix LI89_RS03175 PF13521 AAA domain LI89_RS03180 PF08240 Alcohol dehydrogenase GroES-like domain LI89_RS03180 PF00107 Zinc-binding dehydrogenase LI89_RS03185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS03185 PF03466 LysR substrate binding domain LI89_RS03190 PF00005 ABC transporter LI89_RS03190 PF12848 ABC transporter LI89_RS03195 PF00691 OmpA family LI89_RS03200 PF17152 Periplasmic sensor domain LI89_RS03200 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS03210 PF00689 Cation transporting ATPase, C-terminus LI89_RS03210 PF00690 Cation transporter/ATPase, N-terminus LI89_RS03215 PF14718 Soluble lytic murein transglycosylase L domain LI89_RS03215 PF01464 Transglycosylase SLT domain LI89_RS03220 PF01371 Trp repressor protein LI89_RS03225 PF01931 Protein of unknown function DUF84 LI89_RS03230 PF00300 Histidine phosphatase superfamily (branch 1) LI89_RS03235 PF06445 GyrI-like small molecule binding domain LI89_RS03235 PF12833 Helix-turn-helix domain LI89_RS03240 PF05981 CreA protein LI89_RS03245 PF00072 Response regulator receiver domain LI89_RS03245 PF00486 Transcriptional regulatory protein, C terminal LI89_RS03255 PF03447 Homoserine dehydrogenase, NAD binding domain LI89_RS03255 PF00742 Homoserine dehydrogenase LI89_RS03255 PF01842 ACT domain LI89_RS03255 PF00696 Amino acid kinase family LI89_RS03255 PF13840 ACT domain LI89_RS03260 PF08544 GHMP kinases C terminal LI89_RS03260 PF00288 GHMP kinases N terminal domain LI89_RS03265 PF14821 Threonine synthase N terminus LI89_RS03265 PF00291 Pyridoxal-phosphate dependent enzyme LI89_RS03270 PF03883 Peroxide stress protein YaaA LI89_RS03275 PF00923 Transaldolase/Fructose-6-phosphate aldolase LI89_RS03280 PF00994 Probable molybdopterin binding domain LI89_RS03285 PF07690 Major Facilitator Superfamily LI89_RS03295 PF01184 GPR1/FUN34/yaaH family LI89_RS03300 PF00012 Hsp70 protein LI89_RS03305 PF00684 DnaJ central domain LI89_RS03305 PF01556 DnaJ C terminal domain LI89_RS03305 PF00226 DnaJ domain LI89_RS03310 PF06965 Na+/H+ antiporter 1 LI89_RS03315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS03315 PF03466 LysR substrate binding domain LI89_RS03320 PF01649 Ribosomal protein S20 LI89_RS03325 PF01687 Riboflavin kinase LI89_RS03325 PF06574 FAD synthetase LI89_RS03330 PF06827 Zinc finger found in FPG and IleRS LI89_RS03330 PF08264 Anticodon-binding domain of tRNA LI89_RS03330 PF00133 tRNA synthetases class I (I, L, M and V) LI89_RS03335 PF01252 Signal peptidase (SPase) II LI89_RS03340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LI89_RS03345 PF02401 LytB protein LI89_RS03350 PF01113 Dihydrodipicolinate reductase, N-terminus LI89_RS03350 PF05173 Dihydrodipicolinate reductase, C-terminus LI89_RS03355 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LI89_RS03355 PF00117 Glutamine amidotransferase class-I LI89_RS03360 PF02142 MGS-like domain LI89_RS03360 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LI89_RS03360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LI89_RS03365 PF01810 LysE type translocator LI89_RS03370 PF06738 Putative threonine/serine exporter LI89_RS03375 PF12821 Threonine/Serine exporter, ThrE LI89_RS03380 PF00186 Dihydrofolate reductase LI89_RS03385 PF00149 Calcineurin-like phosphoesterase LI89_RS03390 PF04379 ApaG domain LI89_RS03395 PF00398 Ribosomal RNA adenine dimethylase LI89_RS03400 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LI89_RS03405 PF09312 SurA N-terminal domain LI89_RS03405 PF00639 PPIC-type PPIASE domain LI89_RS03410 PF03968 OstA-like protein LI89_RS03410 PF04453 LPS transport system D LI89_RS03415 PF05099 Tellurite resistance protein TerB LI89_RS03415 PF00226 DnaJ domain LI89_RS03420 PF00849 RNA pseudouridylate synthase LI89_RS03425 PF02369 Bacterial Ig-like domain (group 1) LI89_RS03425 PF09134 Invasin, domain 3 LI89_RS03425 PF07979 Intimin C-type lectin domain LI89_RS03425 PF11924 Inverse autotransporter, beta-domain LI89_RS03430 PF00271 Helicase conserved C-terminal domain LI89_RS03430 PF18337 RapA N-terminal Tudor like domain LI89_RS03430 PF12137 RNA polymerase recycling family C-terminal LI89_RS03430 PF18339 RapA N-terminal Tudor like domain 1 LI89_RS03430 PF00176 SNF2 family N-terminal domain LI89_RS03435 PF03104 DNA polymerase family B, exonuclease domain LI89_RS03435 PF00136 DNA polymerase family B LI89_RS03440 PF09335 SNARE associated Golgi protein LI89_RS03445 PF00005 ABC transporter LI89_RS03450 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS03470 PF12793 Sugar transport-related sRNA regulator N-term LI89_RS03470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LI89_RS03475 PF04055 Radical SAM superfamily LI89_RS03480 PF01228 Glycine radical LI89_RS03480 PF02901 Pyruvate formate lyase-like LI89_RS03490 PF07690 Major Facilitator Superfamily LI89_RS03495 PF03222 Tryptophan/tyrosine permease family LI89_RS03500 PF01212 Beta-eliminating lyase LI89_RS03510 PF00694 Aconitase C-terminal domain LI89_RS03515 PF00330 Aconitase family (aconitate hydratase) LI89_RS03520 PF00180 Isocitrate/isopropylmalate dehydrogenase LI89_RS03525 PF00682 HMGL-like LI89_RS03525 PF08502 LeuA allosteric (dimerisation) domain LI89_RS03530 PF03466 LysR substrate binding domain LI89_RS03530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS03535 PF00501 AMP-binding enzyme LI89_RS03540 PF00205 Thiamine pyrophosphate enzyme, central domain LI89_RS03540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LI89_RS03540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LI89_RS03545 PF10369 Small subunit of acetolactate synthase LI89_RS03550 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LI89_RS03550 PF00356 Bacterial regulatory proteins, lacI family LI89_RS03555 PF06610 L-alanine exporter LI89_RS03560 PF02381 MraZ protein, putative antitoxin-like LI89_RS03565 PF01795 MraW methylase family LI89_RS03570 PF04999 Cell division protein FtsL LI89_RS03575 PF00905 Penicillin binding protein transpeptidase domain LI89_RS03575 PF03717 Penicillin-binding Protein dimerisation domain LI89_RS03580 PF02875 Mur ligase family, glutamate ligase domain LI89_RS03580 PF08245 Mur ligase middle domain LI89_RS03580 PF01225 Mur ligase family, catalytic domain LI89_RS03585 PF08245 Mur ligase middle domain LI89_RS03585 PF01225 Mur ligase family, catalytic domain LI89_RS03585 PF02875 Mur ligase family, glutamate ligase domain LI89_RS03590 PF00953 Glycosyl transferase family 4 LI89_RS03590 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LI89_RS03595 PF08245 Mur ligase middle domain LI89_RS03595 PF02875 Mur ligase family, glutamate ligase domain LI89_RS03600 PF01098 Cell cycle protein LI89_RS03605 PF03033 Glycosyltransferase family 28 N-terminal domain LI89_RS03605 PF04101 Glycosyltransferase family 28 C-terminal domain LI89_RS03610 PF08245 Mur ligase middle domain LI89_RS03610 PF01225 Mur ligase family, catalytic domain LI89_RS03610 PF02875 Mur ligase family, glutamate ligase domain LI89_RS03615 PF01820 D-ala D-ala ligase N-terminus LI89_RS03615 PF07478 D-ala D-ala ligase C-terminus LI89_RS03620 PF03799 Cell division protein FtsQ LI89_RS03620 PF08478 POTRA domain, FtsQ-type LI89_RS03625 PF02491 SHS2 domain inserted in FTSA LI89_RS03630 PF12327 FtsZ family, C-terminal domain LI89_RS03630 PF00091 Tubulin/FtsZ family, GTPase domain LI89_RS03635 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LI89_RS03645 PF06558 Secretion monitor precursor protein (SecM) LI89_RS03650 PF07516 SecA Wing and Scaffold domain LI89_RS03650 PF02810 SEC-C motif LI89_RS03650 PF01043 SecA preprotein cross-linking domain LI89_RS03650 PF07517 SecA DEAD-like domain LI89_RS03655 PF00293 NUDIX domain LI89_RS03660 PF03884 DNA gyrase inhibitor YacG LI89_RS03665 PF07072 Cell division protein LI89_RS03670 PF01121 Dephospho-CoA kinase LI89_RS03675 PF00478 IMP dehydrogenase / GMP reductase domain LI89_RS03680 PF00482 Type II secretion system (T2SS), protein F LI89_RS03685 PF00437 Type II/IV secretion system protein LI89_RS03685 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LI89_RS03690 PF07963 Prokaryotic N-terminal methylation motif LI89_RS03695 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LI89_RS03695 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LI89_RS03700 PF01510 N-acetylmuramoyl-L-alanine amidase LI89_RS03705 PF17113 Regulatory signalling modulator protein AmpE LI89_RS03710 PF00324 Amino acid permease LI89_RS03715 PF07729 FCD domain LI89_RS03715 PF00392 Bacterial regulatory proteins, gntR family LI89_RS03720 PF17831 Pyruvate dehydrogenase E1 component middle domain LI89_RS03720 PF00456 Transketolase, thiamine diphosphate binding domain LI89_RS03725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LI89_RS03725 PF02817 e3 binding domain LI89_RS03725 PF00364 Biotin-requiring enzyme LI89_RS03730 PF07992 Pyridine nucleotide-disulphide oxidoreductase LI89_RS03730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LI89_RS03745 PF00593 TonB dependent receptor LI89_RS03745 PF07715 TonB-dependent Receptor Plug Domain LI89_RS03750 PF06434 Aconitate hydratase 2 N-terminus LI89_RS03750 PF11791 Aconitate B N-terminal domain LI89_RS03750 PF00330 Aconitase family (aconitate hydratase) LI89_RS03755 PF06062 Uncharacterised protein family (UPF0231) LI89_RS03760 PF00892 EamA-like transporter family LI89_RS03770 PF07262 CDI immunity protein LI89_RS03785 PF02675 S-adenosylmethionine decarboxylase LI89_RS03790 PF17284 Spermidine synthase tetramerisation domain LI89_RS03795 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LI89_RS03800 PF10518 TAT (twin-arginine translocation) pathway signal sequence LI89_RS03800 PF07732 Multicopper oxidase LI89_RS03800 PF07731 Multicopper oxidase LI89_RS03800 PF00394 Multicopper oxidase LI89_RS03810 PF00156 Phosphoribosyl transferase domain LI89_RS03815 PF00484 Carbonic anhydrase LI89_RS03820 PF00005 ABC transporter LI89_RS03825 PF01061 ABC-2 type transporter LI89_RS03830 PF01522 Polysaccharide deacetylase LI89_RS03835 PF02261 Aspartate decarboxylase LI89_RS03840 PF02569 Pantoate-beta-alanine ligase LI89_RS03845 PF02548 Ketopantoate hydroxymethyltransferase LI89_RS03850 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LI89_RS03855 PF12626 Polymerase A arginine-rich C-terminus LI89_RS03855 PF01743 Poly A polymerase head domain LI89_RS03855 PF12627 Probable RNA and SrmB- binding site of polymerase A LI89_RS03860 PF00749 tRNA synthetases class I (E and Q), catalytic domain LI89_RS03865 PF01258 Prokaryotic dksA/traR C4-type zinc finger LI89_RS03870 PF03749 Sugar fermentation stimulation protein RE domain LI89_RS03870 PF17746 SfsA N-terminal OB domain LI89_RS03875 PF02834 LigT like Phosphoesterase LI89_RS03880 PF00271 Helicase conserved C-terminal domain LI89_RS03880 PF08482 ATP-dependent helicase C-terminal LI89_RS03880 PF04408 Helicase associated domain (HA2) LI89_RS03880 PF00270 DEAD/DEAH box helicase LI89_RS03885 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal LI89_RS03885 PF00912 Transglycosylase LI89_RS03885 PF14814 Bifunctional transglycosylase second domain LI89_RS03885 PF00905 Penicillin binding protein transpeptidase domain LI89_RS03890 PF00005 ABC transporter LI89_RS03895 PF01497 Periplasmic binding protein LI89_RS03900 PF01032 FecCD transport family LI89_RS03905 PF00202 Aminotransferase class-III LI89_RS03910 PF00654 Voltage gated chloride channel LI89_RS03915 PF01521 Iron-sulphur cluster biosynthesis LI89_RS03920 PF03458 UPF0126 domain LI89_RS03925 PF01497 Periplasmic binding protein LI89_RS03930 PF01048 Phosphorylase superfamily LI89_RS03935 PF13286 Phosphohydrolase-associated domain LI89_RS03935 PF01966 HD domain LI89_RS03940 PF00595 PDZ domain LI89_RS03945 PF00072 Response regulator receiver domain LI89_RS03945 PF01627 Hpt domain LI89_RS03945 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS03945 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LI89_RS03945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS03945 PF00672 HAMP domain LI89_RS03950 PF05958 tRNA (Uracil-5-)-methyltransferase LI89_RS03950 PF01938 TRAM domain LI89_RS03955 PF04607 Region found in RelA / SpoT proteins LI89_RS03955 PF13291 ACT domain LI89_RS03955 PF02824 TGS domain LI89_RS03960 PF03819 MazG nucleotide pyrophosphohydrolase domain LI89_RS03965 PF06418 CTP synthase N-terminus LI89_RS03965 PF00117 Glutamine amidotransferase class-I LI89_RS03970 PF03952 Enolase, N-terminal domain LI89_RS03970 PF00113 Enolase, C-terminal TIM barrel domain LI89_RS03985 PF01053 Cys/Met metabolism PLP-dependent enzyme LI89_RS03995 PF00080 Copper/zinc superoxide dismutase (SODC) LI89_RS04000 PF04055 Radical SAM superfamily LI89_RS04005 PF01242 6-pyruvoyl tetrahydropterin synthase LI89_RS04010 PF00667 FAD binding domain LI89_RS04010 PF00258 Flavodoxin LI89_RS04010 PF00175 Oxidoreductase NAD-binding domain LI89_RS04015 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LI89_RS04015 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LI89_RS04020 PF01507 Phosphoadenosine phosphosulfate reductase family LI89_RS04035 PF04389 Peptidase family M28 LI89_RS04040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LI89_RS04040 PF10414 Sirohaem synthase dimerisation region LI89_RS04040 PF14824 Sirohaem biosynthesis protein central LI89_RS04045 PF01507 Phosphoadenosine phosphosulfate reductase family LI89_RS04050 PF00009 Elongation factor Tu GTP binding domain LI89_RS04060 PF12084 Protein of unknown function (DUF3561) LI89_RS04065 PF00005 ABC transporter LI89_RS04070 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS04075 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS04080 PF04977 Septum formation initiator LI89_RS04085 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LI89_RS04090 PF02542 YgbB family LI89_RS04095 PF01142 tRNA pseudouridine synthase D (TruD) LI89_RS04100 PF01975 Survival protein SurE LI89_RS04110 PF01476 LysM domain LI89_RS04110 PF01551 Peptidase family M23 LI89_RS04115 PF04542 Sigma-70 region 2 LI89_RS04115 PF04539 Sigma-70 region 3 LI89_RS04115 PF00140 Sigma-70 factor, region 1.2 LI89_RS04115 PF04545 Sigma-70, region 4 LI89_RS04120 PF05190 MutS family domain IV LI89_RS04120 PF05192 MutS domain III LI89_RS04120 PF05188 MutS domain II LI89_RS04120 PF00488 MutS domain V LI89_RS04120 PF01624 MutS domain I LI89_RS04135 PF00419 Fimbrial protein LI89_RS04140 PF00419 Fimbrial protein LI89_RS04145 PF13954 PapC N-terminal domain LI89_RS04145 PF13953 PapC C-terminal domain LI89_RS04145 PF00577 Outer membrane usher protein LI89_RS04150 PF02753 Pili assembly chaperone PapD, C-terminal domain LI89_RS04150 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS04160 PF00419 Fimbrial protein LI89_RS04165 PF00419 Fimbrial protein LI89_RS04190 PF00664 ABC transporter transmembrane region LI89_RS04190 PF00005 ABC transporter LI89_RS04190 PF03412 Peptidase C39 family LI89_RS04195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LI89_RS04200 PF12704 MacB-like periplasmic core domain LI89_RS04200 PF02687 FtsX-like permease family LI89_RS04200 PF00005 ABC transporter LI89_RS04205 PF02321 Outer membrane efflux protein LI89_RS04210 PF02801 Beta-ketoacyl synthase, C-terminal domain LI89_RS04210 PF00109 Beta-ketoacyl synthase, N-terminal domain LI89_RS04230 PF03212 Pertactin LI89_RS04230 PF13018 Extended Signal Peptide of Type V secretion system LI89_RS04230 PF03797 Autotransporter beta-domain LI89_RS04230 PF16168 Adhesin of bacterial autotransporter system, probable stalk LI89_RS04235 PF03466 LysR substrate binding domain LI89_RS04235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS04240 PF02447 GntP family permease LI89_RS04245 PF00291 Pyridoxal-phosphate dependent enzyme LI89_RS04250 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS04255 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS04260 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS04265 PF00005 ABC transporter LI89_RS04270 PF01546 Peptidase family M20/M25/M40 LI89_RS04275 PF09347 Domain of unknown function (DUF1989) LI89_RS04290 PF00009 Elongation factor Tu GTP binding domain LI89_RS04290 PF03144 Elongation factor Tu domain 2 LI89_RS04290 PF03764 Elongation factor G, domain IV LI89_RS04290 PF00679 Elongation factor G C-terminus LI89_RS04290 PF14492 Elongation Factor G, domain II LI89_RS04295 PF01022 Bacterial regulatory protein, arsR family LI89_RS04300 PF08240 Alcohol dehydrogenase GroES-like domain LI89_RS04300 PF00107 Zinc-binding dehydrogenase LI89_RS04305 PF03613 PTS system mannose/fructose/sorbose family IID component LI89_RS04310 PF03609 PTS system sorbose-specific iic component LI89_RS04315 PF03830 PTS system sorbose subfamily IIB component LI89_RS04320 PF03610 PTS system fructose IIA component LI89_RS04325 PF04198 Putative sugar-binding domain LI89_RS04325 PF13936 Helix-turn-helix domain LI89_RS04330 PF00795 Carbon-nitrogen hydrolase LI89_RS04350 PF00005 ABC transporter LI89_RS04355 PF00005 ABC transporter LI89_RS04360 PF11862 Domain of unknown function (DUF3382) LI89_RS04360 PF02653 Branched-chain amino acid transport system / permease component LI89_RS04365 PF02653 Branched-chain amino acid transport system / permease component LI89_RS04370 PF13458 Periplasmic binding protein LI89_RS04375 PF05681 Fumarate hydratase (Fumerase) LI89_RS04375 PF05683 Fumarase C-terminus LI89_RS04380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LI89_RS04380 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LI89_RS04385 PF01261 Xylose isomerase-like TIM barrel LI89_RS04390 PF02653 Branched-chain amino acid transport system / permease component LI89_RS04395 PF02653 Branched-chain amino acid transport system / permease component LI89_RS04400 PF00005 ABC transporter LI89_RS04410 PF08220 DeoR-like helix-turn-helix domain LI89_RS04410 PF00455 DeoR C terminal sensor domain LI89_RS04415 PF00596 Class II Aldolase and Adducin N-terminal domain LI89_RS04420 PF08220 DeoR-like helix-turn-helix domain LI89_RS04420 PF00455 DeoR C terminal sensor domain LI89_RS04425 PF05025 RbsD / FucU transport protein family LI89_RS04430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LI89_RS04430 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LI89_RS04435 PF02952 L-fucose isomerase, C-terminal domain LI89_RS04435 PF07882 L-fucose isomerase, second N-terminal domain LI89_RS04435 PF07881 L-fucose isomerase, first N-terminal domain LI89_RS04440 PF07690 Major Facilitator Superfamily LI89_RS04445 PF00596 Class II Aldolase and Adducin N-terminal domain LI89_RS04450 PF00465 Iron-containing alcohol dehydrogenase LI89_RS04455 PF00384 Molybdopterin oxidoreductase LI89_RS04455 PF01568 Molydopterin dinucleotide binding domain LI89_RS04455 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS04460 PF13247 4Fe-4S dicluster domain LI89_RS04460 PF12800 4Fe-4S binding domain LI89_RS04465 PF04976 DMSO reductase anchor subunit (DmsC) LI89_RS04470 PF02613 Nitrate reductase delta subunit LI89_RS04485 PF13407 Periplasmic binding protein domain LI89_RS04495 PF00005 ABC transporter LI89_RS04500 PF02653 Branched-chain amino acid transport system / permease component LI89_RS04505 PF00456 Transketolase, thiamine diphosphate binding domain LI89_RS04510 PF02780 Transketolase, C-terminal domain LI89_RS04510 PF02779 Transketolase, pyrimidine binding domain LI89_RS04515 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LI89_RS04515 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LI89_RS04530 PF07690 Major Facilitator Superfamily LI89_RS04535 PF02464 Competence-damaged protein LI89_RS04540 PF00154 recA bacterial DNA recombination protein LI89_RS04545 PF02631 RecX family LI89_RS04550 PF02272 DHHA1 domain LI89_RS04550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LI89_RS04550 PF01411 tRNA synthetases class II (A) LI89_RS04555 PF02599 Global regulator protein family LI89_RS04590 PF13419 Haloacid dehalogenase-like hydrolase LI89_RS04595 PF09335 SNARE associated Golgi protein LI89_RS04600 PF04262 Glutamate-cysteine ligase LI89_RS04605 PF02664 S-Ribosylhomocysteinase (LuxS) LI89_RS04610 PF03471 Transporter associated domain LI89_RS04610 PF01595 Cyclin M transmembrane N-terminal domain LI89_RS04610 PF00571 CBS domain LI89_RS04615 PF01578 Cytochrome C assembly protein LI89_RS04620 PF00448 SRP54-type protein, GTPase domain LI89_RS04620 PF02881 SRP54-type protein, helical bundle domain LI89_RS04620 PF02978 Signal peptide binding domain LI89_RS04625 PF00886 Ribosomal protein S16 LI89_RS04630 PF05239 PRC-barrel domain LI89_RS04630 PF01782 RimM N-terminal domain LI89_RS04635 PF01746 tRNA (Guanine-1)-methyltransferase LI89_RS04640 PF01245 Ribosomal protein L19 LI89_RS04645 PF04338 Protein of unknown function, DUF481 LI89_RS04650 PF03605 Anaerobic c4-dicarboxylate membrane transporter LI89_RS04655 PF00072 Response regulator receiver domain LI89_RS04655 PF04397 LytTr DNA-binding domain LI89_RS04660 PF00793 DAHP synthetase I family LI89_RS04665 PF02153 Prephenate dehydrogenase LI89_RS04665 PF01817 Chorismate mutase type II LI89_RS04670 PF00800 Prephenate dehydratase LI89_RS04670 PF01817 Chorismate mutase type II LI89_RS04675 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LI89_RS04680 PF13525 Outer membrane lipoprotein LI89_RS04685 PF01479 S4 domain LI89_RS04685 PF00849 RNA pseudouridylate synthase LI89_RS04690 PF02578 Multi-copper polyphenol oxidoreductase laccase LI89_RS04695 PF07724 AAA domain (Cdc48 subfamily) LI89_RS04695 PF00004 ATPase family associated with various cellular activities (AAA) LI89_RS04695 PF02861 Clp amino terminal domain, pathogenicity island component LI89_RS04695 PF17871 AAA lid domain LI89_RS04695 PF10431 C-terminal, D2-small domain, of ClpB protein LI89_RS04735 PF10043 Predicted periplasmic lipoprotein (DUF2279) LI89_RS04740 PF13091 PLD-like domain LI89_RS04745 PF13607 Succinyl-CoA ligase like flavodoxin domain LI89_RS04745 PF13380 CoA binding domain LI89_RS04745 PF00583 Acetyltransferase (GNAT) family LI89_RS04750 PF03942 DTW domain LI89_RS04755 PF00085 Thioredoxin LI89_RS04760 PF08032 RNA 2'-O ribose methyltransferase substrate binding LI89_RS04760 PF00588 SpoU rRNA Methylase family LI89_RS04765 PF07690 Major Facilitator Superfamily LI89_RS04770 PF00529 HlyD membrane-fusion protein of T1SS LI89_RS04770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LI89_RS04775 PF02321 Outer membrane efflux protein LI89_RS04780 PF01047 MarR family LI89_RS04785 PF05437 Branched-chain amino acid transport protein (AzlD) LI89_RS04790 PF03591 AzlC protein LI89_RS04795 PF07690 Major Facilitator Superfamily LI89_RS04805 PF01425 Amidase LI89_RS04825 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS04830 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS04835 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS04840 PF00005 ABC transporter LI89_RS04845 PF00266 Aminotransferase class-V LI89_RS04850 PF01546 Peptidase family M20/M25/M40 LI89_RS04850 PF07687 Peptidase dimerisation domain LI89_RS04855 PF00795 Carbon-nitrogen hydrolase LI89_RS04860 PF00155 Aminotransferase class I and II LI89_RS04865 PF00596 Class II Aldolase and Adducin N-terminal domain LI89_RS04875 PF03079 ARD/ARD' family LI89_RS04880 PF01008 Initiation factor 2 subunit family LI89_RS04885 PF01636 Phosphotransferase enzyme family LI89_RS04890 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LI89_RS04890 PF08479 POTRA domain, ShlB-type LI89_RS04895 PF05860 haemagglutination activity domain LI89_RS04900 PF18071 HMW1C N-terminal LI89_RS04900 PF18254 HMW1 domain 2 LI89_RS04905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LI89_RS04905 PF09317 Domain of unknown function (DUF1974) LI89_RS04905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LI89_RS04910 PF13580 SIS domain LI89_RS04915 PF13230 Glutamine amidotransferases class-II LI89_RS04920 PF03734 L,D-transpeptidase catalytic domain LI89_RS04925 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LI89_RS04925 PF11973 NQRA C-terminal domain LI89_RS04930 PF03116 NQR2, RnfD, RnfE family LI89_RS04935 PF04205 FMN-binding domain LI89_RS04940 PF02508 Rnf-Nqr subunit, membrane protein LI89_RS04945 PF02508 Rnf-Nqr subunit, membrane protein LI89_RS04950 PF00970 Oxidoreductase FAD-binding domain LI89_RS04950 PF00111 2Fe-2S iron-sulfur cluster binding domain LI89_RS04950 PF00175 Oxidoreductase NAD-binding domain LI89_RS04955 PF02424 ApbE family LI89_RS04960 PF04400 (Na+)-NQR maturation NqrM LI89_RS04965 PF03009 Glycerophosphoryl diester phosphodiesterase family LI89_RS04970 PF01820 D-ala D-ala ligase N-terminus LI89_RS04970 PF07478 D-ala D-ala ligase C-terminus LI89_RS04975 PF13309 HTH domain LI89_RS04975 PF08348 YheO-like PAS domain LI89_RS04980 PF00291 Pyridoxal-phosphate dependent enzyme LI89_RS04990 PF00817 impB/mucB/samB family LI89_RS04990 PF11798 IMS family HHH motif LI89_RS04990 PF11799 impB/mucB/samB family C-terminal domain LI89_RS04995 PF07687 Peptidase dimerisation domain LI89_RS04995 PF01546 Peptidase family M20/M25/M40 LI89_RS05000 PF00156 Phosphoribosyl transferase domain LI89_RS05005 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LI89_RS05010 PF07417 Sigma factor-binding transcriptional regulator Crl LI89_RS05015 PF01472 PUA domain LI89_RS05015 PF00696 Amino acid kinase family LI89_RS05020 PF00171 Aldehyde dehydrogenase family LI89_RS05025 PF07702 UTRA domain LI89_RS05025 PF00392 Bacterial regulatory proteins, gntR family LI89_RS05030 PF02378 Phosphotransferase system, EIIC LI89_RS05030 PF00367 phosphotransferase system, EIIB LI89_RS05035 PF02056 Family 4 glycosyl hydrolase LI89_RS05035 PF11975 Family 4 glycosyl hydrolase C-terminal domain LI89_RS05040 PF07238 PilZ domain LI89_RS05040 PF07317 Flagellar regulator YcgR LI89_RS05045 PF10091 Putative glucoamylase LI89_RS05045 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LI89_RS05045 PF06165 Glycosyltransferase family 36 LI89_RS05060 PF08241 Methyltransferase domain LI89_RS05075 PF01497 Periplasmic binding protein LI89_RS05080 PF07715 TonB-dependent Receptor Plug Domain LI89_RS05080 PF00593 TonB dependent receptor LI89_RS05085 PF01202 Shikimate kinase LI89_RS05090 PF06865 Pyrimidine/purine nucleoside phosphorylase LI89_RS05095 PF04381 Putative exonuclease, RdgC LI89_RS05100 PF00480 ROK family LI89_RS05105 PF13476 AAA domain LI89_RS05110 PF00149 Calcineurin-like phosphoesterase LI89_RS05110 PF12320 Type 5 capsule protein repressor C-terminal domain LI89_RS05115 PF00072 Response regulator receiver domain LI89_RS05115 PF00486 Transcriptional regulatory protein, C terminal LI89_RS05120 PF11808 Phosphate regulon sensor protein PhoR LI89_RS05120 PF00989 PAS fold LI89_RS05120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS05120 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS05125 PF12849 PBP superfamily domain LI89_RS05130 PF05525 Branched-chain amino acid transport protein LI89_RS05135 PF00324 Amino acid permease LI89_RS05140 PF02903 Alpha amylase, N-terminal ig-like domain LI89_RS05140 PF00128 Alpha amylase, catalytic domain LI89_RS05155 PF00578 AhpC/TSA family LI89_RS05155 PF10417 C-terminal domain of 1-Cys peroxiredoxin LI89_RS05160 PF04336 Acyl carrier protein phosphodiesterase LI89_RS05165 PF02547 Queuosine biosynthesis protein LI89_RS05175 PF01702 Queuine tRNA-ribosyltransferase LI89_RS05180 PF02699 Preprotein translocase subunit LI89_RS05185 PF13721 SecD export protein N-terminal TM region LI89_RS05185 PF07549 SecD/SecF GG Motif LI89_RS05185 PF02355 Protein export membrane protein LI89_RS05190 PF02355 Protein export membrane protein LI89_RS05190 PF07549 SecD/SecF GG Motif LI89_RS05200 PF03477 ATP cone domain LI89_RS05205 PF01872 RibD C-terminal domain LI89_RS05205 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LI89_RS05210 PF00885 6,7-dimethyl-8-ribityllumazine synthase LI89_RS05215 PF01029 NusB family LI89_RS05220 PF02769 AIR synthase related protein, C-terminal domain LI89_RS05220 PF00586 AIR synthase related protein, N-terminal domain LI89_RS05225 PF04608 Phosphatidylglycerophosphatase A LI89_RS05230 PF02780 Transketolase, C-terminal domain LI89_RS05230 PF02779 Transketolase, pyrimidine binding domain LI89_RS05230 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LI89_RS05235 PF00348 Polyprenyl synthetase LI89_RS05240 PF02609 Exonuclease VII small subunit LI89_RS05245 PF02568 Thiamine biosynthesis protein (ThiI) LI89_RS05245 PF02926 THUMP domain LI89_RS05250 PF01965 DJ-1/PfpI family LI89_RS05255 PF02558 Ketopantoate reductase PanE/ApbA LI89_RS05255 PF08546 Ketopantoate reductase PanE/ApbA C terminal LI89_RS05260 PF04461 Protein of unknown function (DUF520) LI89_RS05265 PF07690 Major Facilitator Superfamily LI89_RS05270 PF01040 UbiA prenyltransferase family LI89_RS05275 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LI89_RS05280 PF00510 Cytochrome c oxidase subunit III LI89_RS05285 PF00115 Cytochrome C and Quinol oxidase polypeptide I LI89_RS05290 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LI89_RS05290 PF06481 COX Aromatic Rich Motif LI89_RS05295 PF03502 Nucleoside-specific channel-forming protein, Tsx LI89_RS05300 PF07690 Major Facilitator Superfamily LI89_RS05305 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LI89_RS05305 PF03923 Uncharacterized lipoprotein LI89_RS05310 PF01722 BolA-like protein LI89_RS05315 PF05698 Bacterial trigger factor protein (TF) C-terminus LI89_RS05315 PF05697 Bacterial trigger factor protein (TF) LI89_RS05315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LI89_RS05320 PF00574 Clp protease LI89_RS05325 PF06689 ClpX C4-type zinc finger LI89_RS05325 PF07724 AAA domain (Cdc48 subfamily) LI89_RS05325 PF10431 C-terminal, D2-small domain, of ClpB protein LI89_RS05330 PF00004 ATPase family associated with various cellular activities (AAA) LI89_RS05330 PF05362 Lon protease (S16) C-terminal proteolytic domain LI89_RS05330 PF02190 ATP-dependent protease La (LON) substrate-binding domain LI89_RS05335 PF00216 Bacterial DNA-binding protein LI89_RS05340 PF13145 PPIC-type PPIASE domain LI89_RS05355 PF06508 Queuosine biosynthesis protein QueC LI89_RS05360 PF12793 Sugar transport-related sRNA regulator N-term LI89_RS05360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LI89_RS05375 PF01037 Lrp/AsnC ligand binding domain LI89_RS05375 PF13404 AsnC-type helix-turn-helix domain LI89_RS05380 PF00005 ABC transporter LI89_RS05380 PF00664 ABC transporter transmembrane region LI89_RS05385 PF00005 ABC transporter LI89_RS05385 PF00664 ABC transporter transmembrane region LI89_RS05390 PF00543 Nitrogen regulatory protein P-II LI89_RS05395 PF00909 Ammonium Transporter Family LI89_RS05405 PF09619 Type III secretion system lipoprotein chaperone (YscW) LI89_RS05410 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LI89_RS05420 PF05321 Haemolysin expression modulating protein LI89_RS05425 PF10757 Biofilm formation regulator YbaJ LI89_RS05440 PF00005 ABC transporter LI89_RS05445 PF00950 ABC 3 transport family LI89_RS05450 PF01297 Zinc-uptake complex component A periplasmic LI89_RS05455 PF00444 Ribosomal protein L36 LI89_RS05460 PF01197 Ribosomal protein L31 LI89_RS05465 PF10797 Protein of unknown function LI89_RS05470 PF10941 Protein of unknown function DUF2620 LI89_RS05475 PF01676 Metalloenzyme superfamily LI89_RS05480 PF01168 Alanine racemase, N-terminal domain LI89_RS05490 PF00873 AcrB/AcrD/AcrF family LI89_RS05495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LI89_RS05495 PF00529 HlyD membrane-fusion protein of T1SS LI89_RS05500 PF00440 Bacterial regulatory proteins, tetR family LI89_RS05500 PF08361 MAATS-type transcriptional repressor, C-terminal region LI89_RS05505 PF02635 DsrE/DsrF-like family LI89_RS05510 PF00924 Mechanosensitive ion channel LI89_RS05510 PF12795 Mechanosensitive ion channel porin domain LI89_RS05510 PF12794 Mechanosensitive ion channel inner membrane domain 1 LI89_RS05515 PF10689 Protein of unknown function (DUF2496) LI89_RS05525 PF04304 Protein of unknown function (DUF454) LI89_RS05530 PF00156 Phosphoribosyl transferase domain LI89_RS05535 PF12170 DNA polymerase III tau subunit V interacting with alpha LI89_RS05535 PF12169 DNA polymerase III subunits gamma and tau domain III LI89_RS05535 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LI89_RS05540 PF02575 YbaB/EbfC DNA-binding family LI89_RS05545 PF02132 RecR protein LI89_RS05545 PF13662 Toprim domain LI89_RS05550 PF00183 Hsp90 protein LI89_RS05550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS05555 PF05191 Adenylate kinase, active site lid LI89_RS05560 PF00762 Ferrochelatase LI89_RS05565 PF01943 Polysaccharide biosynthesis protein LI89_RS05570 PF00535 Glycosyl transferase family 2 LI89_RS05570 PF01501 Glycosyl transferase family 8 LI89_RS05575 PF00535 Glycosyl transferase family 2 LI89_RS05575 PF01501 Glycosyl transferase family 8 LI89_RS05580 PF13439 Glycosyltransferase Family 4 LI89_RS05580 PF00534 Glycosyl transferases group 1 LI89_RS05585 PF03033 Glycosyltransferase family 28 N-terminal domain LI89_RS05585 PF04101 Glycosyltransferase family 28 C-terminal domain LI89_RS05590 PF00953 Glycosyl transferase family 4 LI89_RS05595 PF02719 Polysaccharide biosynthesis protein LI89_RS05600 PF00534 Glycosyl transferases group 1 LI89_RS05600 PF13439 Glycosyltransferase Family 4 LI89_RS05605 PF16363 GDP-mannose 4,6 dehydratase LI89_RS05610 PF00294 pfkB family carbohydrate kinase LI89_RS05615 PF02254 TrkA-N domain LI89_RS05615 PF00999 Sodium/hydrogen exchanger family LI89_RS05620 PF07690 Major Facilitator Superfamily LI89_RS05625 PF02872 5'-nucleotidase, C-terminal domain LI89_RS05625 PF00149 Calcineurin-like phosphoesterase LI89_RS05630 PF04073 Aminoacyl-tRNA editing domain LI89_RS05635 PF01963 TraB family LI89_RS05640 PF00403 Heavy-metal-associated domain LI89_RS05645 PF13411 MerR HTH family regulatory protein LI89_RS05650 PF01957 NfeD-like C-terminal, partner-binding LI89_RS05655 PF01145 SPFH domain / Band 7 family LI89_RS05655 PF16200 C-terminal region of band_7 LI89_RS05660 PF00085 Thioredoxin LI89_RS05665 PF00106 short chain dehydrogenase LI89_RS05670 PF13472 GDSL-like Lipase/Acylhydrolase family LI89_RS05675 PF00005 ABC transporter LI89_RS05685 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LI89_RS05685 PF02222 ATP-grasp domain LI89_RS05690 PF00731 AIR carboxylase LI89_RS05695 PF00149 Calcineurin-like phosphoesterase LI89_RS05700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LI89_RS05705 PF01406 tRNA synthetases class I (C) catalytic domain LI89_RS05705 PF09190 DALR domain LI89_RS05715 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LI89_RS05715 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LI89_RS05730 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LI89_RS05735 PF03466 LysR substrate binding domain LI89_RS05735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS05745 PF00248 Aldo/keto reductase family LI89_RS05765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS05765 PF00672 HAMP domain LI89_RS05765 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS05770 PF00072 Response regulator receiver domain LI89_RS05770 PF00486 Transcriptional regulatory protein, C terminal LI89_RS05775 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LI89_RS05785 PF08007 Cupin superfamily protein LI89_RS05790 PF00221 Aromatic amino acid lyase LI89_RS05795 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LI89_RS05800 PF00005 ABC transporter LI89_RS05800 PF00664 ABC transporter transmembrane region LI89_RS05815 PF00149 Calcineurin-like phosphoesterase LI89_RS05825 PF00196 Bacterial regulatory proteins, luxR family LI89_RS05830 PF00313 'Cold-shock' DNA-binding domain LI89_RS05835 PF00313 'Cold-shock' DNA-binding domain LI89_RS05840 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LI89_RS05845 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS05845 PF05230 MASE2 domain LI89_RS05850 PF02416 mttA/Hcf106 family LI89_RS05855 PF04055 Radical SAM superfamily LI89_RS05855 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LI89_RS05860 PF03099 Biotin/lipoate A/B protein ligase family LI89_RS05865 PF04359 Protein of unknown function (DUF493) LI89_RS05870 PF07943 Penicillin-binding protein 5, C-terminal domain LI89_RS05870 PF00768 D-alanyl-D-alanine carboxypeptidase LI89_RS05875 PF03330 Lytic transglycolase LI89_RS05875 PF05036 Sporulation related domain LI89_RS05880 PF01098 Cell cycle protein LI89_RS05885 PF03717 Penicillin-binding Protein dimerisation domain LI89_RS05885 PF00905 Penicillin binding protein transpeptidase domain LI89_RS05890 PF02590 Predicted SPOUT methyltransferase LI89_RS05900 PF01467 Cytidylyltransferase-like LI89_RS05905 PF06144 DNA polymerase III, delta subunit LI89_RS05905 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LI89_RS05910 PF04390 Lipopolysaccharide-assembly LI89_RS05915 PF13603 Leucyl-tRNA synthetase, Domain 2 LI89_RS05915 PF00133 tRNA synthetases class I (I, L, M and V) LI89_RS05915 PF08264 Anticodon-binding domain of tRNA LI89_RS05920 PF07295 Zinc-ribbon containing domain LI89_RS05930 PF00005 ABC transporter LI89_RS05935 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS05940 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS05945 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS05955 PF00795 Carbon-nitrogen hydrolase LI89_RS05960 PF00571 CBS domain LI89_RS05960 PF03471 Transporter associated domain LI89_RS05965 PF02130 Uncharacterized protein family UPF0054 LI89_RS05970 PF02562 PhoH-like protein LI89_RS05975 PF00919 Uncharacterized protein family UPF0004 LI89_RS05975 PF01938 TRAM domain LI89_RS05975 PF04055 Radical SAM superfamily LI89_RS05980 PF01494 FAD binding domain LI89_RS06015 PF13537 Glutamine amidotransferase domain LI89_RS06015 PF00733 Asparagine synthase LI89_RS06020 PF13344 Haloacid dehalogenase-like hydrolase LI89_RS06025 PF00480 ROK family LI89_RS06025 PF01047 MarR family LI89_RS06030 PF01979 Amidohydrolase family LI89_RS06035 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LI89_RS06040 PF02378 Phosphotransferase system, EIIC LI89_RS06040 PF00367 phosphotransferase system, EIIB LI89_RS06040 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LI89_RS06045 PF00749 tRNA synthetases class I (E and Q), catalytic domain LI89_RS06045 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LI89_RS06050 PF03573 outer membrane porin, OprD family LI89_RS06055 PF13982 YbfN-like lipoprotein LI89_RS06060 PF03173 Putative carbohydrate binding domain LI89_RS06060 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LI89_RS06060 PF00728 Glycosyl hydrolase family 20, catalytic domain LI89_RS06060 PF02838 Glycosyl hydrolase family 20, domain 2 LI89_RS06065 PF01475 Ferric uptake regulator family LI89_RS06070 PF00258 Flavodoxin LI89_RS06075 PF02203 Tar ligand binding domain homologue LI89_RS06075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LI89_RS06075 PF00672 HAMP domain LI89_RS06080 PF01402 Ribbon-helix-helix protein, copG family LI89_RS06085 PF12697 Alpha/beta hydrolase family LI89_RS06090 PF03925 SeqA protein C-terminal domain LI89_RS06090 PF17206 SeqA protein N-terminal domain LI89_RS06095 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LI89_RS06095 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LI89_RS06095 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LI89_RS06095 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LI89_RS06110 PF00486 Transcriptional regulatory protein, C terminal LI89_RS06110 PF00072 Response regulator receiver domain LI89_RS06115 PF02702 Osmosensitive K+ channel His kinase sensor domain LI89_RS06115 PF13493 Domain of unknown function (DUF4118) LI89_RS06115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS06115 PF13492 GAF domain LI89_RS06115 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS06120 PF02669 K+-transporting ATPase, c chain LI89_RS06130 PF03814 Potassium-transporting ATPase A subunit LI89_RS06135 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) LI89_RS06140 PF10725 Protein of unknown function (DUF2517) LI89_RS06150 PF02794 RTX toxin acyltransferase family LI89_RS06155 PF11647 Membrane Localization Domain LI89_RS06155 PF11713 Peptidase C80 family LI89_RS06155 PF07634 RtxA repeat LI89_RS06155 PF12146 Serine aminopeptidase, S33 LI89_RS06155 PF16671 Actin cross-linking domain LI89_RS06155 PF12146 Serine aminopeptidase, S33 LI89_RS06155 PF11647 Membrane Localization Domain LI89_RS06155 PF16671 Actin cross-linking domain LI89_RS06155 PF11713 Peptidase C80 family LI89_RS06155 PF07634 RtxA repeat LI89_RS06160 PF08349 Protein of unknown function (DUF1722) LI89_RS06165 PF00875 DNA photolyase LI89_RS06165 PF03441 FAD binding domain of DNA photolyase LI89_RS06170 PF02112 cAMP phosphodiesterases class-II LI89_RS06175 PF01784 NIF3 (NGG1p interacting factor 3) LI89_RS06180 PF02682 Carboxyltransferase domain, subdomain C and D LI89_RS06185 PF02626 Carboxyltransferase domain, subdomain A and B LI89_RS06190 PF03746 LamB/YcsF family LI89_RS06205 PF01470 Pyroglutamyl peptidase LI89_RS06210 PF00285 Citrate synthase, C-terminal domain LI89_RS06215 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LI89_RS06220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LI89_RS06225 PF02910 Fumarate reductase flavoprotein C-term LI89_RS06225 PF00890 FAD binding domain LI89_RS06230 PF13085 2Fe-2S iron-sulfur cluster binding domain LI89_RS06235 PF16870 2-oxoglutarate dehydrogenase C-terminal LI89_RS06235 PF16078 2-oxoglutarate dehydrogenase N-terminus LI89_RS06235 PF00676 Dehydrogenase E1 component LI89_RS06235 PF02779 Transketolase, pyrimidine binding domain LI89_RS06240 PF02817 e3 binding domain LI89_RS06240 PF00364 Biotin-requiring enzyme LI89_RS06240 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LI89_RS06245 PF00549 CoA-ligase LI89_RS06245 PF08442 ATP-grasp domain LI89_RS06250 PF02629 CoA binding domain LI89_RS06250 PF00549 CoA-ligase LI89_RS06255 PF00149 Calcineurin-like phosphoesterase LI89_RS06255 PF02872 5'-nucleotidase, C-terminal domain LI89_RS06260 PF01654 Cytochrome bd terminal oxidase subunit I LI89_RS06265 PF02322 Cytochrome bd terminal oxidase subunit II LI89_RS06270 PF08173 Membrane bound YbgT-like protein LI89_RS06275 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LI89_RS06280 PF03061 Thioesterase superfamily LI89_RS06285 PF01618 MotA/TolQ/ExbB proton channel family LI89_RS06290 PF02472 Biopolymer transport protein ExbD/TolR LI89_RS06295 PF06519 TolA C-terminal LI89_RS06295 PF06519 TolA C-terminal LI89_RS06300 PF04052 TolB amino-terminal domain LI89_RS06300 PF07676 WD40-like Beta Propeller Repeat LI89_RS06305 PF00691 OmpA family LI89_RS06310 PF13174 Tetratricopeptide repeat LI89_RS06310 PF16331 TolA binding protein trimerisation LI89_RS06355 PF02445 Quinolinate synthetase A protein LI89_RS06360 PF04973 Nicotinamide mononucleotide transporter LI89_RS06365 PF01545 Cation efflux family LI89_RS06370 PF00793 DAHP synthetase I family LI89_RS06375 PF00300 Histidine phosphatase superfamily (branch 1) LI89_RS06380 PF01223 DNA/RNA non-specific endonuclease LI89_RS06390 PF01263 Aldose 1-epimerase LI89_RS06395 PF10509 Galactokinase galactose-binding signature LI89_RS06395 PF00288 GHMP kinases N terminal domain LI89_RS06395 PF08544 GHMP kinases C terminal LI89_RS06400 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LI89_RS06400 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LI89_RS06405 PF16363 GDP-mannose 4,6 dehydratase LI89_RS06415 PF00005 ABC transporter LI89_RS06420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS06420 PF03459 TOBE domain LI89_RS06425 PF10766 Multidrug efflux pump-associated protein AcrZ LI89_RS06435 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS06440 PF00005 ABC transporter LI89_RS06440 PF03459 TOBE domain LI89_RS06450 PF10282 Lactonase, 7-bladed beta-propeller LI89_RS06455 PF00202 Aminotransferase class-III LI89_RS06460 PF06968 Biotin and Thiamin Synthesis associated domain LI89_RS06460 PF04055 Radical SAM superfamily LI89_RS06465 PF00155 Aminotransferase class I and II LI89_RS06470 PF08241 Methyltransferase domain LI89_RS06480 PF00005 ABC transporter LI89_RS06485 PF12344 Ultra-violet resistance protein B LI89_RS06485 PF17757 UvrB interaction domain LI89_RS06485 PF04851 Type III restriction enzyme, res subunit LI89_RS06485 PF02151 UvrB/uvrC motif LI89_RS06485 PF00271 Helicase conserved C-terminal domain LI89_RS06490 PF09905 DNA-binding protein VF530 LI89_RS06495 PF01933 Uncharacterised protein family UPF0052 LI89_RS06500 PF04055 Radical SAM superfamily LI89_RS06500 PF06463 Molybdenum Cofactor Synthesis C LI89_RS06505 PF01967 MoaC family LI89_RS06510 PF02597 ThiS family LI89_RS06515 PF02391 MoaE protein LI89_RS06520 PF01027 Inhibitor of apoptosis-promoting Bax1 LI89_RS06535 PF00005 ABC transporter LI89_RS06540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LI89_RS06545 PF00440 Bacterial regulatory proteins, tetR family LI89_RS06545 PF09209 Tetracyclin repressor-like, C-terminal domain LI89_RS06550 PF00271 Helicase conserved C-terminal domain LI89_RS06550 PF00270 DEAD/DEAH box helicase LI89_RS06555 PF01207 Dihydrouridine synthase (Dus) LI89_RS06565 PF00768 D-alanyl-D-alanine carboxypeptidase LI89_RS06570 PF09330 D-lactate dehydrogenase, membrane binding LI89_RS06570 PF01565 FAD binding domain LI89_RS06575 PF01928 CYTH domain LI89_RS06580 PF01844 HNH endonuclease LI89_RS06590 PF04226 Transglycosylase associated protein LI89_RS06595 PF00005 ABC transporter LI89_RS06605 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS06610 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS06615 PF07308 Protein of unknown function (DUF1456) LI89_RS06620 PF13458 Periplasmic binding protein LI89_RS06625 PF02653 Branched-chain amino acid transport system / permease component LI89_RS06630 PF02653 Branched-chain amino acid transport system / permease component LI89_RS06635 PF12399 Branched-chain amino acid ATP-binding cassette transporter LI89_RS06635 PF00005 ABC transporter LI89_RS06640 PF00005 ABC transporter LI89_RS06645 PF00581 Rhodanese-like domain LI89_RS06660 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LI89_RS06665 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS06670 PF00005 ABC transporter LI89_RS06675 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS06690 PF03466 LysR substrate binding domain LI89_RS06690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS06700 PF00892 EamA-like transporter family LI89_RS06710 PF00267 Gram-negative porin LI89_RS06715 PF06733 DEAD_2 LI89_RS06715 PF13307 Helicase C-terminal domain LI89_RS06720 PF00230 Major intrinsic protein LI89_RS06725 PF02885 Glycosyl transferase family, helical bundle domain LI89_RS06735 PF07338 Protein of unknown function (DUF1471) LI89_RS06745 PF05971 RNA methyltransferase LI89_RS06750 PF13426 PAS domain LI89_RS06750 PF08447 PAS fold LI89_RS06750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LI89_RS06755 PF00005 ABC transporter LI89_RS06760 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS06765 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS06770 PF01258 Prokaryotic dksA/traR C4-type zinc finger LI89_RS06775 PF00210 Ferritin-like domain LI89_RS06780 PF13847 Methyltransferase domain LI89_RS06795 PF02469 Fasciclin domain LI89_RS06805 PF00892 EamA-like transporter family LI89_RS06815 PF13505 Outer membrane protein beta-barrel domain LI89_RS06835 PF00005 ABC transporter LI89_RS06835 PF12848 ABC transporter LI89_RS06840 PF00899 ThiF family LI89_RS06845 PF00994 Probable molybdopterin binding domain LI89_RS06845 PF03454 MoeA C-terminal region (domain IV) LI89_RS06845 PF03453 MoeA N-terminal region (domain I and II) LI89_RS06860 PF00005 ABC transporter LI89_RS06860 PF02687 FtsX-like permease family LI89_RS06860 PF12704 MacB-like periplasmic core domain LI89_RS06880 PF00756 Putative esterase LI89_RS06885 PF00107 Zinc-binding dehydrogenase LI89_RS06885 PF08240 Alcohol dehydrogenase GroES-like domain LI89_RS06890 PF03466 LysR substrate binding domain LI89_RS06890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS06895 PF06779 Uncharacterised MFS-type transporter YbfB LI89_RS06900 PF01227 GTP cyclohydrolase I LI89_RS06905 PF04235 Protein of unknown function (DUF418) LI89_RS06910 PF00356 Bacterial regulatory proteins, lacI family LI89_RS06915 PF13407 Periplasmic binding protein domain LI89_RS06920 PF00005 ABC transporter LI89_RS06925 PF02653 Branched-chain amino acid transport system / permease component LI89_RS06930 PF01226 Formate/nitrite transporter LI89_RS06935 PF00158 Sigma-54 interaction domain LI89_RS06935 PF01590 GAF domain LI89_RS06940 PF00384 Molybdopterin oxidoreductase LI89_RS06940 PF01568 Molydopterin dinucleotide binding domain LI89_RS06940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS06945 PF13247 4Fe-4S dicluster domain LI89_RS06945 PF12800 4Fe-4S binding domain LI89_RS06950 PF01750 Hydrogenase maturation protease LI89_RS06955 PF07450 Formate hydrogenlyase maturation protein HycH LI89_RS06960 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LI89_RS06965 PF12838 4Fe-4S dicluster domain LI89_RS06970 PF00374 Nickel-dependent hydrogenase LI89_RS06970 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LI89_RS06970 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LI89_RS06975 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LI89_RS06975 PF00361 Proton-conducting membrane transporter LI89_RS06980 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LI89_RS06985 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LI89_RS06985 PF00361 Proton-conducting membrane transporter LI89_RS06990 PF00146 NADH dehydrogenase LI89_RS06995 PF00361 Proton-conducting membrane transporter LI89_RS07000 PF00037 4Fe-4S binding domain LI89_RS07000 PF12798 4Fe-4S binding domain LI89_RS07005 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LI89_RS07010 PF01455 HupF/HypC family LI89_RS07015 PF02698 DUF218 domain LI89_RS07020 PF00390 Malic enzyme, N-terminal domain LI89_RS07020 PF03949 Malic enzyme, NAD binding domain LI89_RS07030 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LI89_RS07030 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LI89_RS07035 PF04172 LrgB-like family LI89_RS07040 PF03788 LrgA family LI89_RS07045 PF07690 Major Facilitator Superfamily LI89_RS07065 PF01588 Putative tRNA binding domain LI89_RS07065 PF09334 tRNA synthetases class I (M) LI89_RS07070 PF10609 NUBPL iron-transfer P-loop NTPase LI89_RS07075 PF00485 Phosphoribulokinase / Uridine kinase family LI89_RS07080 PF00692 dUTPase LI89_RS07085 PF05170 AsmA family LI89_RS07090 PF03606 C4-dicarboxylate anaerobic carrier LI89_RS07095 PF03471 Transporter associated domain LI89_RS07095 PF00571 CBS domain LI89_RS07095 PF03741 Integral membrane protein TerC family LI89_RS07100 PF00483 Nucleotidyl transferase LI89_RS07105 PF00483 Nucleotidyl transferase LI89_RS07110 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LI89_RS07110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LI89_RS07115 PF01502 Phosphoribosyl-AMP cyclohydrolase LI89_RS07115 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LI89_RS07120 PF00977 Histidine biosynthesis protein LI89_RS07125 PF00977 Histidine biosynthesis protein LI89_RS07130 PF00117 Glutamine amidotransferase class-I LI89_RS07135 PF00475 Imidazoleglycerol-phosphate dehydratase LI89_RS07140 PF00155 Aminotransferase class I and II LI89_RS07145 PF00815 Histidinol dehydrogenase LI89_RS07150 PF01634 ATP phosphoribosyltransferase LI89_RS07150 PF08029 HisG, C-terminal domain LI89_RS07155 PF01370 NAD dependent epimerase/dehydratase family LI89_RS07160 PF02653 Branched-chain amino acid transport system / permease component LI89_RS07165 PF00005 ABC transporter LI89_RS07170 PF01548 Transposase LI89_RS07170 PF02371 Transposase IS116/IS110/IS902 family LI89_RS07175 PF00005 ABC transporter LI89_RS07180 PF00465 Iron-containing alcohol dehydrogenase LI89_RS07190 PF13520 Amino acid permease LI89_RS07195 PF08411 Exonuclease C-terminal LI89_RS07195 PF00929 Exonuclease LI89_RS07200 PF00550 Phosphopantetheine attachment site LI89_RS07200 PF07993 Male sterility protein LI89_RS07200 PF00501 AMP-binding enzyme LI89_RS07205 PF04632 Fusaric acid resistance protein family LI89_RS07210 PF04363 Protein of unknown function (DUF496) LI89_RS07215 PF02653 Branched-chain amino acid transport system / permease component LI89_RS07220 PF02653 Branched-chain amino acid transport system / permease component LI89_RS07225 PF00005 ABC transporter LI89_RS07230 PF13407 Periplasmic binding protein domain LI89_RS07240 PF00196 Bacterial regulatory proteins, luxR family LI89_RS07240 PF03472 Autoinducer binding domain LI89_RS07245 PF00288 GHMP kinases N terminal domain LI89_RS07250 PF00155 Aminotransferase class I and II LI89_RS07255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LI89_RS07255 PF14824 Sirohaem biosynthesis protein central LI89_RS07255 PF10414 Sirohaem synthase dimerisation region LI89_RS07260 PF00871 Acetokinase family LI89_RS07265 PF10662 Ethanolamine utilisation - propanediol utilisation LI89_RS07270 PF00936 BMC domain LI89_RS07280 PF13375 RnfC Barrel sandwich hybrid domain LI89_RS07280 PF10531 SLBB domain LI89_RS07280 PF13237 4Fe-4S dicluster domain LI89_RS07280 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LI89_RS07285 PF00465 Iron-containing alcohol dehydrogenase LI89_RS07290 PF00171 Aldehyde dehydrogenase family LI89_RS07295 PF01923 Cobalamin adenosyltransferase LI89_RS07300 PF03319 Ethanolamine utilisation protein EutN/carboxysome LI89_RS07310 PF06130 Phosphate propanoyltransferase LI89_RS07320 PF00936 BMC domain LI89_RS07330 PF08841 Diol dehydratase reactivase ATPase-like domain LI89_RS07330 PF18427 DD-reactivating factor swiveling domain LI89_RS07335 PF02287 Dehydratase small subunit LI89_RS07340 PF02288 Dehydratase medium subunit LI89_RS07345 PF02286 Dehydratase large subunit LI89_RS07350 PF00936 BMC domain LI89_RS07355 PF00936 BMC domain LI89_RS07360 PF00230 Major intrinsic protein LI89_RS07365 PF10114 Sensory domain found in PocR LI89_RS07365 PF12833 Helix-turn-helix domain LI89_RS07370 PF07685 CobB/CobQ-like glutamine amidotransferase domain LI89_RS07370 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LI89_RS07375 PF03186 CobD/Cbib protein LI89_RS07380 PF02570 Precorrin-8X methylmutase LI89_RS07385 PF01888 CbiD LI89_RS07390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LI89_RS07395 PF05175 Methyltransferase small domain LI89_RS07400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LI89_RS07405 PF01890 Cobalamin synthesis G C-terminus LI89_RS07405 PF11761 Cobalamin biosynthesis central region LI89_RS07405 PF11760 Cobalamin synthesis G N-terminal LI89_RS07410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LI89_RS07415 PF02571 Precorrin-6x reductase CbiJ/CobK LI89_RS07420 PF06180 Cobalt chelatase (CbiK) LI89_RS07425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LI89_RS07430 PF01891 Cobalt uptake substrate-specific transmembrane region LI89_RS07435 PF02553 Cobalt transport protein component CbiN LI89_RS07440 PF02361 Cobalt transport protein LI89_RS07445 PF00005 ABC transporter LI89_RS07450 PF07685 CobB/CobQ-like glutamine amidotransferase domain LI89_RS07455 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LI89_RS07460 PF02654 Cobalamin-5-phosphate synthase LI89_RS07465 PF00300 Histidine phosphatase superfamily (branch 1) LI89_RS07470 PF02277 Phosphoribosyltransferase LI89_RS07475 PF03466 LysR substrate binding domain LI89_RS07475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS07485 PF01048 Phosphorylase superfamily LI89_RS07490 PF03825 Nucleoside H+ symporter LI89_RS07535 PF05947 Type VI secretion system, TssF LI89_RS07540 PF00004 ATPase family associated with various cellular activities (AAA) LI89_RS07540 PF07724 AAA domain (Cdc48 subfamily) LI89_RS07540 PF17871 AAA lid domain LI89_RS07540 PF10431 C-terminal, D2-small domain, of ClpB protein LI89_RS07545 PF00419 Fimbrial protein LI89_RS07550 PF02753 Pili assembly chaperone PapD, C-terminal domain LI89_RS07550 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS07555 PF13953 PapC C-terminal domain LI89_RS07555 PF13954 PapC N-terminal domain LI89_RS07555 PF00577 Outer membrane usher protein LI89_RS07565 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LI89_RS07570 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LI89_RS07585 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LI89_RS07595 PF06744 Type VI secretion protein IcmF C-terminal LI89_RS07595 PF14331 ImcF-related N-terminal domain LI89_RS07595 PF06761 Intracellular multiplication and human macrophage-killing LI89_RS07600 PF04717 Type VI secretion system, phage-baseplate injector LI89_RS07610 PF07024 ImpE protein LI89_RS07620 PF00764 Arginosuccinate synthase LI89_RS07625 PF01554 MatE LI89_RS07635 PF02581 Thiamine monophosphate synthase LI89_RS07645 PF00455 DeoR C terminal sensor domain LI89_RS07645 PF08220 DeoR-like helix-turn-helix domain LI89_RS07650 PF00144 Beta-lactamase LI89_RS07655 PF01584 CheW-like domain LI89_RS07655 PF00072 Response regulator receiver domain LI89_RS07665 PF00106 short chain dehydrogenase LI89_RS07675 PF00005 ABC transporter LI89_RS07685 PF02653 Branched-chain amino acid transport system / permease component LI89_RS07695 PF02653 Branched-chain amino acid transport system / permease component LI89_RS07705 PF00107 Zinc-binding dehydrogenase LI89_RS07705 PF08240 Alcohol dehydrogenase GroES-like domain LI89_RS07710 PF00392 Bacterial regulatory proteins, gntR family LI89_RS07710 PF00155 Aminotransferase class I and II LI89_RS07720 PF02558 Ketopantoate reductase PanE/ApbA LI89_RS07720 PF08546 Ketopantoate reductase PanE/ApbA C terminal LI89_RS07730 PF02753 Pili assembly chaperone PapD, C-terminal domain LI89_RS07730 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS07740 PF13954 PapC N-terminal domain LI89_RS07740 PF13953 PapC C-terminal domain LI89_RS07740 PF00577 Outer membrane usher protein LI89_RS07745 PF02753 Pili assembly chaperone PapD, C-terminal domain LI89_RS07745 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS07755 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS07755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS07755 PF00989 PAS fold LI89_RS07755 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS07755 PF00072 Response regulator receiver domain LI89_RS07755 PF01627 Hpt domain LI89_RS07760 PF00196 Bacterial regulatory proteins, luxR family LI89_RS07760 PF00072 Response regulator receiver domain LI89_RS07785 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LI89_RS07800 PF01527 Transposase LI89_RS07805 PF00665 Integrase core domain LI89_RS07815 PF08402 TOBE domain LI89_RS07815 PF00005 ABC transporter LI89_RS07820 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS07830 PF07690 Major Facilitator Superfamily LI89_RS07835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS07835 PF05231 MASE1 LI89_RS07835 PF07730 Histidine kinase LI89_RS07840 PF00072 Response regulator receiver domain LI89_RS07840 PF00196 Bacterial regulatory proteins, luxR family LI89_RS07845 PF00072 Response regulator receiver domain LI89_RS07845 PF12431 Transcriptional regulator LI89_RS07850 PF17203 Single cache domain 3 LI89_RS07850 PF00989 PAS fold LI89_RS07850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS07850 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LI89_RS07855 PF08218 Citrate lyase ligase C-terminal domain LI89_RS07860 PF06857 Malonate decarboxylase delta subunit (MdcD) LI89_RS07865 PF03328 HpcH/HpaI aldolase/citrate lyase family LI89_RS07870 PF04223 Citrate lyase, alpha subunit (CitF) LI89_RS07875 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase LI89_RS07880 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LI89_RS07885 PF00939 Sodium:sulfate symporter transmembrane region LI89_RS07890 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LI89_RS07900 PF03480 Bacterial extracellular solute-binding protein, family 7 LI89_RS07905 PF01648 4'-phosphopantetheinyl transferase superfamily LI89_RS07905 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LI89_RS07915 PF00083 Sugar (and other) transporter LI89_RS07920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LI89_RS07920 PF00381 PTS HPr component phosphorylation site LI89_RS07945 PF00005 ABC transporter LI89_RS07945 PF02687 FtsX-like permease family LI89_RS07945 PF12704 MacB-like periplasmic core domain LI89_RS07950 PF00005 ABC transporter LI89_RS07950 PF02687 FtsX-like permease family LI89_RS07950 PF12704 MacB-like periplasmic core domain LI89_RS07955 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LI89_RS07960 PF00849 RNA pseudouridylate synthase LI89_RS07970 PF06167 Glucose-regulated metallo-peptidase M90 LI89_RS07980 PF00005 ABC transporter LI89_RS07985 PF02653 Branched-chain amino acid transport system / permease component LI89_RS07990 PF02653 Branched-chain amino acid transport system / permease component LI89_RS07995 PF00294 pfkB family carbohydrate kinase LI89_RS08000 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LI89_RS08000 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LI89_RS08005 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LI89_RS08005 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LI89_RS08025 PF13953 PapC C-terminal domain LI89_RS08025 PF13954 PapC N-terminal domain LI89_RS08025 PF00577 Outer membrane usher protein LI89_RS08030 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS08035 PF00483 Nucleotidyl transferase LI89_RS08040 PF00328 Histidine phosphatase superfamily (branch 2) LI89_RS08045 PF14001 YdfZ protein LI89_RS08060 PF10777 Inner membrane protein YlaC LI89_RS08065 PF00107 Zinc-binding dehydrogenase LI89_RS08065 PF14765 Polyketide synthase dehydratase LI89_RS08065 PF00550 Phosphopantetheine attachment site LI89_RS08065 PF00698 Acyl transferase domain LI89_RS08065 PF08659 KR domain LI89_RS08065 PF08240 Alcohol dehydrogenase GroES-like domain LI89_RS08065 PF00109 Beta-ketoacyl synthase, N-terminal domain LI89_RS08065 PF16197 Ketoacyl-synthetase C-terminal extension LI89_RS08065 PF02801 Beta-ketoacyl synthase, C-terminal domain LI89_RS08070 PF00703 Glycosyl hydrolases family 2 LI89_RS08070 PF02929 Beta galactosidase small chain LI89_RS08070 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LI89_RS08070 PF02837 Glycosyl hydrolases family 2, sugar binding domain LI89_RS08070 PF16353 Domain of unknown function(DUF4981) LI89_RS08075 PF00356 Bacterial regulatory proteins, lacI family LI89_RS08080 PF00313 'Cold-shock' DNA-binding domain LI89_RS08085 PF10781 Dextransucrase DSRB LI89_RS08090 PF02203 Tar ligand binding domain homologue LI89_RS08090 PF00672 HAMP domain LI89_RS08090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LI89_RS08095 PF02515 CoA-transferase family III LI89_RS08100 PF02308 MgtC family LI89_RS08105 PF00689 Cation transporting ATPase, C-terminus LI89_RS08105 PF00690 Cation transporter/ATPase, N-terminus LI89_RS08110 PF16884 N-terminal domain of oxidoreductase LI89_RS08110 PF00107 Zinc-binding dehydrogenase LI89_RS08115 PF00582 Universal stress protein family LI89_RS08120 PF05247 Flagellar transcriptional activator (FlhD) LI89_RS08125 PF05280 Flagellar transcriptional activator (FlhC) LI89_RS08130 PF01618 MotA/TolQ/ExbB proton channel family LI89_RS08135 PF13677 Membrane MotB of proton-channel complex MotA/MotB LI89_RS08135 PF00691 OmpA family LI89_RS08140 PF09078 CheY binding LI89_RS08140 PF02895 Signal transducing histidine kinase, homodimeric domain LI89_RS08140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS08140 PF01627 Hpt domain LI89_RS08140 PF01584 CheW-like domain LI89_RS08145 PF01584 CheW-like domain LI89_RS08150 PF02203 Tar ligand binding domain homologue LI89_RS08150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LI89_RS08150 PF00672 HAMP domain LI89_RS08155 PF02203 Tar ligand binding domain homologue LI89_RS08155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LI89_RS08155 PF00672 HAMP domain LI89_RS08160 PF01739 CheR methyltransferase, SAM binding domain LI89_RS08160 PF03705 CheR methyltransferase, all-alpha domain LI89_RS08165 PF00072 Response regulator receiver domain LI89_RS08165 PF01339 CheB methylesterase LI89_RS08170 PF00072 Response regulator receiver domain LI89_RS08175 PF04344 Chemotaxis phosphatase, CheZ LI89_RS08180 PF01483 Proprotein convertase P-domain LI89_RS08180 PF00082 Subtilase family LI89_RS08185 PF01312 FlhB HrpN YscU SpaS Family LI89_RS08190 PF00771 FHIPEP family LI89_RS08195 PF06366 Flagellar protein FlhE LI89_RS08200 PF11924 Inverse autotransporter, beta-domain LI89_RS08200 PF02369 Bacterial Ig-like domain (group 1) LI89_RS08200 PF09134 Invasin, domain 3 LI89_RS08200 PF07979 Intimin C-type lectin domain LI89_RS08205 PF05130 FlgN protein LI89_RS08210 PF04316 Anti-sigma-28 factor, FlgM LI89_RS08215 PF13144 Chaperone for flagella basal body P-ring formation LI89_RS08215 PF17656 FlgA N-terminal domain LI89_RS08220 PF00460 Flagella basal body rod protein LI89_RS08225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LI89_RS08225 PF00460 Flagella basal body rod protein LI89_RS08230 PF03963 Flagellar hook capping protein - N-terminal region LI89_RS08230 PF13860 FlgD Ig-like domain LI89_RS08230 PF13861 FlgD Tudor-like domain LI89_RS08235 PF07559 Flagellar basal body protein FlaE LI89_RS08235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LI89_RS08235 PF00460 Flagella basal body rod protein LI89_RS08240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LI89_RS08240 PF00460 Flagella basal body rod protein LI89_RS08245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LI89_RS08245 PF00460 Flagella basal body rod protein LI89_RS08250 PF02107 Flagellar L-ring protein LI89_RS08255 PF02119 Flagellar P-ring protein LI89_RS08260 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LI89_RS08260 PF10135 Rod binding protein LI89_RS08265 PF00460 Flagella basal body rod protein LI89_RS08265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LI89_RS08270 PF00669 Bacterial flagellin N-terminal helical region LI89_RS08275 PF01311 Bacterial export proteins, family 1 LI89_RS08280 PF01313 Bacterial export proteins, family 3 LI89_RS08285 PF00813 FliP family LI89_RS08290 PF04347 Flagellar biosynthesis protein, FliO LI89_RS08295 PF16973 Flagellar motor switch protein FliN N-terminal LI89_RS08295 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LI89_RS08300 PF02154 Flagellar motor switch protein FliM LI89_RS08300 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LI89_RS08305 PF03748 Flagellar basal body-associated protein FliL LI89_RS08310 PF02120 Flagellar hook-length control protein FliK LI89_RS08315 PF02050 Flagellar FliJ protein LI89_RS08320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LI89_RS08320 PF18269 T3SS EscN ATPase C-terminal domain LI89_RS08325 PF02108 Flagellar assembly protein FliH LI89_RS08330 PF14841 FliG middle domain LI89_RS08330 PF01706 FliG C-terminal domain LI89_RS08330 PF14842 FliG N-terminal domain LI89_RS08335 PF01514 Secretory protein of YscJ/FliF family LI89_RS08335 PF08345 Flagellar M-ring protein C-terminal LI89_RS08340 PF02049 Flagellar hook-basal body complex protein FliE LI89_RS08345 PF00730 HhH-GPD superfamily base excision DNA repair protein LI89_RS08350 PF01966 HD domain LI89_RS08355 PF12833 Helix-turn-helix domain LI89_RS08360 PF05400 Flagellar protein FliT LI89_RS08365 PF02561 Flagellar protein FliS LI89_RS08370 PF07196 Flagellin hook IN motif LI89_RS08370 PF07195 Flagellar hook-associated protein 2 C-terminus LI89_RS08370 PF02465 Flagellar hook-associated protein 2 N-terminus LI89_RS08375 PF00700 Bacterial flagellin C-terminal helical region LI89_RS08375 PF00669 Bacterial flagellin N-terminal helical region LI89_RS08375 PF08884 Flagellin D3 domain LI89_RS08380 PF00700 Bacterial flagellin C-terminal helical region LI89_RS08380 PF00669 Bacterial flagellin N-terminal helical region LI89_RS08380 PF08884 Flagellin D3 domain LI89_RS08385 PF00669 Bacterial flagellin N-terminal helical region LI89_RS08385 PF00700 Bacterial flagellin C-terminal helical region LI89_RS08385 PF08884 Flagellin D3 domain LI89_RS08390 PF08884 Flagellin D3 domain LI89_RS08390 PF00669 Bacterial flagellin N-terminal helical region LI89_RS08390 PF00700 Bacterial flagellin C-terminal helical region LI89_RS08400 PF04542 Sigma-70 region 2 LI89_RS08400 PF04539 Sigma-70 region 3 LI89_RS08400 PF04545 Sigma-70, region 4 LI89_RS08405 PF02899 Phage integrase, N-terminal SAM-like domain LI89_RS08410 PF00291 Pyridoxal-phosphate dependent enzyme LI89_RS08415 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS08420 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS08425 PF00005 ABC transporter LI89_RS08440 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LI89_RS08440 PF01619 Proline dehydrogenase LI89_RS08440 PF00171 Aldehyde dehydrogenase family LI89_RS08440 PF14850 DNA-binding domain of Proline dehydrogenase LI89_RS08445 PF00474 Sodium:solute symporter family LI89_RS08450 PF03239 Iron permease FTR1 family LI89_RS08455 PF13473 Cupredoxin-like domain LI89_RS08455 PF09375 Imelysin LI89_RS08460 PF04261 Dyp-type peroxidase family LI89_RS08465 PF03358 NADPH-dependent FMN reductase LI89_RS08475 PF01344 Kelch motif LI89_RS08480 PF00860 Permease family LI89_RS08485 PF01613 Flavin reductase like domain LI89_RS08490 PF00881 Nitroreductase family LI89_RS08495 PF12697 Alpha/beta hydrolase family LI89_RS08500 PF01042 Endoribonuclease L-PSP LI89_RS08505 PF00857 Isochorismatase family LI89_RS08510 PF00296 Luciferase-like monooxygenase LI89_RS08515 PF00440 Bacterial regulatory proteins, tetR family LI89_RS08515 PF08362 YcdC-like protein, C-terminal region LI89_RS08520 PF00324 Amino acid permease LI89_RS08540 PF08241 Methyltransferase domain LI89_RS08555 PF00128 Alpha amylase, catalytic domain LI89_RS08555 PF02806 Alpha amylase, C-terminal all-beta domain LI89_RS08565 PF06942 GlpM protein LI89_RS08570 PF10769 Protein of unknown function (DUF2594) LI89_RS08575 PF00072 Response regulator receiver domain LI89_RS08575 PF00196 Bacterial regulatory proteins, luxR family LI89_RS08580 PF02151 UvrB/uvrC motif LI89_RS08580 PF08459 UvrC Helix-hairpin-helix N-terminal LI89_RS08580 PF01541 GIY-YIG catalytic domain LI89_RS08585 PF01066 CDP-alcohol phosphatidyltransferase LI89_RS08755 PF05840 Bacteriophage replication gene A protein (GPA) LI89_RS08785 PF06892 Phage regulatory protein CII (CP76) LI89_RS08800 PF02899 Phage integrase, N-terminal SAM-like domain LI89_RS08800 PF00589 Phage integrase family LI89_RS08855 PF00717 Peptidase S24-like LI89_RS08855 PF01381 Helix-turn-helix LI89_RS08880 PF00772 DnaB-like helicase N terminal domain LI89_RS08880 PF03796 DnaB-like helicase C terminal domain LI89_RS08920 PF07102 Protein of unknown function (DUF1364) LI89_RS08935 PF00959 Phage lysozyme LI89_RS09025 PF03544 Gram-negative bacterial TonB protein C-terminal LI89_RS09110 PF03797 Autotransporter beta-domain LI89_RS09115 PF07508 Recombinase LI89_RS09115 PF13408 Recombinase zinc beta ribbon domain LI89_RS09115 PF00239 Resolvase, N terminal domain LI89_RS09120 PF01527 Transposase LI89_RS09125 PF00665 Integrase core domain LI89_RS09125 PF13333 Integrase core domain LI89_RS09125 PF13276 HTH-like domain LI89_RS09135 PF07690 Major Facilitator Superfamily LI89_RS09145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LI89_RS09160 PF00324 Amino acid permease LI89_RS09165 PF03390 2-hydroxycarboxylate transporter family LI89_RS09170 PF00072 Response regulator receiver domain LI89_RS09175 PF17203 Single cache domain 3 LI89_RS09175 PF00989 PAS fold LI89_RS09175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS09175 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LI89_RS09180 PF08220 DeoR-like helix-turn-helix domain LI89_RS09180 PF00455 DeoR C terminal sensor domain LI89_RS09185 PF07005 Sugar-binding N-terminal domain LI89_RS09185 PF17042 Nucleotide-binding C-terminal domain LI89_RS09190 PF00596 Class II Aldolase and Adducin N-terminal domain LI89_RS09195 PF01261 Xylose isomerase-like TIM barrel LI89_RS09200 PF04960 Glutaminase LI89_RS09215 PF03239 Iron permease FTR1 family LI89_RS09220 PF10634 Fe2+ transport protein LI89_RS09230 PF12704 MacB-like periplasmic core domain LI89_RS09230 PF00005 ABC transporter LI89_RS09230 PF02687 FtsX-like permease family LI89_RS09240 PF00005 ABC transporter LI89_RS09240 PF02687 FtsX-like permease family LI89_RS09240 PF12704 MacB-like periplasmic core domain LI89_RS09255 PF03848 Tellurite resistance protein TehB LI89_RS09255 PF09313 Domain of unknown function (DUF1971) LI89_RS09260 PF03466 LysR substrate binding domain LI89_RS09260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS09265 PF01411 tRNA synthetases class II (A) LI89_RS09265 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LI89_RS09265 PF02272 DHHA1 domain LI89_RS09270 PF11575 FhuF 2Fe-2S C-terminal domain LI89_RS09270 PF06276 Ferric iron reductase FhuF-like transporter LI89_RS09275 PF00557 Metallopeptidase family M24 LI89_RS09285 PF14883 Hypothetical glycosyl hydrolase family 13 LI89_RS09285 PF01522 Polysaccharide deacetylase LI89_RS09290 PF00535 Glycosyl transferase family 2 LI89_RS09295 PF13994 PgaD-like protein LI89_RS09310 PF02562 PhoH-like protein LI89_RS09315 PF01699 Sodium/calcium exchanger protein LI89_RS09325 PF07690 Major Facilitator Superfamily LI89_RS09330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS09330 PF03466 LysR substrate binding domain LI89_RS09335 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LI89_RS09335 PF07730 Histidine kinase LI89_RS09335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS09335 PF00672 HAMP domain LI89_RS09340 PF02322 Cytochrome bd terminal oxidase subunit II LI89_RS09345 PF01654 Cytochrome bd terminal oxidase subunit I LI89_RS09350 PF00155 Aminotransferase class I and II LI89_RS09350 PF00392 Bacterial regulatory proteins, gntR family LI89_RS09355 PF00202 Aminotransferase class-III LI89_RS09360 PF04958 Arginine N-succinyltransferase beta subunit LI89_RS09365 PF00171 Aldehyde dehydrogenase family LI89_RS09370 PF04996 Succinylarginine dihydrolase LI89_RS09375 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LI89_RS09380 PF00267 Gram-negative porin LI89_RS09390 PF01979 Amidohydrolase family LI89_RS09395 PF07702 UTRA domain LI89_RS09395 PF00392 Bacterial regulatory proteins, gntR family LI89_RS09400 PF01979 Amidohydrolase family LI89_RS09405 PF05962 HutD LI89_RS09410 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment LI89_RS09420 PF01476 LysM domain LI89_RS09420 PF01551 Peptidase family M23 LI89_RS09425 PF01116 Fructose-bisphosphate aldolase class-II LI89_RS09430 PF01380 SIS domain LI89_RS09435 PF03610 PTS system fructose IIA component LI89_RS09440 PF03613 PTS system mannose/fructose/sorbose family IID component LI89_RS09445 PF03609 PTS system sorbose-specific iic component LI89_RS09450 PF03830 PTS system sorbose subfamily IIB component LI89_RS09455 PF08013 Tagatose 6 phosphate kinase LI89_RS09460 PF00455 DeoR C terminal sensor domain LI89_RS09460 PF08220 DeoR-like helix-turn-helix domain LI89_RS09475 PF01479 S4 domain LI89_RS09475 PF00849 RNA pseudouridylate synthase LI89_RS09480 PF03616 Sodium/glutamate symporter LI89_RS09500 PF00924 Mechanosensitive ion channel LI89_RS09505 PF02798 Glutathione S-transferase, N-terminal domain LI89_RS09505 PF14834 Glutathione S-transferase, C-terminal domain LI89_RS09525 PF07351 Protein of unknown function (DUF1480) LI89_RS09530 PF00360 Phytochrome region LI89_RS09530 PF00563 EAL domain LI89_RS09530 PF01590 GAF domain LI89_RS09530 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS09565 PF07690 Major Facilitator Superfamily LI89_RS09570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS09570 PF03466 LysR substrate binding domain LI89_RS09575 PF02470 MlaD protein LI89_RS09580 PF04403 Paraquat-inducible protein A LI89_RS09585 PF13185 GAF domain LI89_RS09590 PF04352 ProQ/FINO family LI89_RS09590 PF17516 ProQ C-terminal domain LI89_RS09595 PF17804 Tail specific protease N-terminal domain LI89_RS09595 PF11818 C-terminal domain of tail specific protease (DUF3340) LI89_RS09595 PF00595 PDZ domain LI89_RS09595 PF03572 Peptidase family S41 LI89_RS09600 PF01435 Peptidase family M48 LI89_RS09625 PF07690 Major Facilitator Superfamily LI89_RS09630 PF14583 Oligogalacturonate lyase LI89_RS09635 PF01614 Bacterial transcriptional regulator LI89_RS09635 PF09339 IclR helix-turn-helix domain LI89_RS09640 PF01510 N-acetylmuramoyl-L-alanine amidase LI89_RS09645 PF00375 Sodium:dicarboxylate symporter family LI89_RS09650 PF04307 LexA-binding, inner membrane-associated putative hydrolase LI89_RS09660 PF06178 Oligogalacturonate-specific porin protein (KdgM) LI89_RS09665 PF01547 Bacterial extracellular solute-binding protein LI89_RS09670 PF03459 TOBE domain LI89_RS09670 PF17912 MalK OB fold domain LI89_RS09670 PF00005 ABC transporter LI89_RS09675 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS09680 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS09685 PF06917 Periplasmic pectate lyase LI89_RS09690 PF06917 Periplasmic pectate lyase LI89_RS09700 PF04962 KduI/IolB family LI89_RS09705 PF07883 Cupin domain LI89_RS09710 PF13419 Haloacid dehalogenase-like hydrolase LI89_RS09715 PF14002 YniB-like protein LI89_RS09720 PF03466 LysR substrate binding domain LI89_RS09720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS09725 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LI89_RS09725 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LI89_RS09730 PF00378 Enoyl-CoA hydratase/isomerase LI89_RS09740 PF01642 Methylmalonyl-CoA mutase LI89_RS09740 PF02310 B12 binding domain LI89_RS09745 PF03881 Fructosamine kinase LI89_RS09750 PF00950 ABC 3 transport family LI89_RS09755 PF00950 ABC 3 transport family LI89_RS09760 PF00005 ABC transporter LI89_RS09765 PF01297 Zinc-uptake complex component A periplasmic LI89_RS09770 PF01464 Transglycosylase SLT domain LI89_RS09775 PF01914 MarC family integral membrane protein LI89_RS09800 PF04474 Protein of unknown function (DUF554) LI89_RS09805 PF13619 KTSC domain LI89_RS09810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LI89_RS09810 PF03129 Anticodon binding domain LI89_RS09810 PF02824 TGS domain LI89_RS09810 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LI89_RS09820 PF01632 Ribosomal protein L35 LI89_RS09825 PF00453 Ribosomal protein L20 LI89_RS09830 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LI89_RS09830 PF01409 tRNA synthetases class II core domain (F) LI89_RS09835 PF03147 Ferredoxin-fold anticodon binding domain LI89_RS09835 PF03484 tRNA synthetase B5 domain LI89_RS09835 PF03483 B3/4 domain LI89_RS09835 PF01588 Putative tRNA binding domain LI89_RS09835 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LI89_RS09840 PF00216 Bacterial DNA-binding protein LI89_RS09850 PF01032 FecCD transport family LI89_RS09855 PF00255 Glutathione peroxidase LI89_RS09860 PF00005 ABC transporter LI89_RS09865 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LI89_RS09870 PF00535 Glycosyl transferase family 2 LI89_RS09875 PF00551 Formyl transferase LI89_RS09875 PF01370 NAD dependent epimerase/dehydratase family LI89_RS09875 PF02911 Formyl transferase, C-terminal domain LI89_RS09880 PF01522 Polysaccharide deacetylase LI89_RS09885 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LI89_RS09890 PF00892 EamA-like transporter family LI89_RS09900 PF00877 NlpC/P60 family LI89_RS09905 PF10437 Bacterial lipoate protein ligase C-terminus LI89_RS09905 PF03099 Biotin/lipoate A/B protein ligase family LI89_RS09910 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LI89_RS09915 PF01497 Periplasmic binding protein LI89_RS09920 PF05171 Haemin-degrading HemS.ChuX domain LI89_RS09925 PF00593 TonB dependent receptor LI89_RS09925 PF07715 TonB-dependent Receptor Plug Domain LI89_RS09930 PF10636 Hemin uptake protein hemP LI89_RS09935 PF00793 DAHP synthetase I family LI89_RS09940 PF03618 Kinase/pyrophosphorylase LI89_RS09945 PF00391 PEP-utilising enzyme, mobile domain LI89_RS09945 PF02896 PEP-utilising enzyme, TIM barrel domain LI89_RS09945 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LI89_RS09955 PF01594 AI-2E family transporter LI89_RS09960 PF01565 FAD binding domain LI89_RS09960 PF13183 4Fe-4S dicluster domain LI89_RS09960 PF02913 FAD linked oxidases, C-terminal domain LI89_RS09965 PF03061 Thioesterase superfamily LI89_RS09970 PF01521 Iron-sulphur cluster biosynthesis LI89_RS09975 PF01458 Uncharacterized protein family (UPF0051) LI89_RS09980 PF00005 ABC transporter LI89_RS09985 PF01458 Uncharacterized protein family (UPF0051) LI89_RS09990 PF00266 Aminotransferase class-V LI89_RS09995 PF02657 Fe-S metabolism associated domain LI89_RS10000 PF01476 LysM domain LI89_RS10000 PF03734 L,D-transpeptidase catalytic domain LI89_RS10000 PF17969 L,D-transpeptidase C-terminal domain LI89_RS10005 PF04728 Lipoprotein leucine-zipper LI89_RS10010 PF00224 Pyruvate kinase, barrel domain LI89_RS10010 PF02887 Pyruvate kinase, alpha/beta domain LI89_RS10030 PF01554 MatE LI89_RS10035 PF00677 Lumazine binding domain LI89_RS10045 PF07690 Major Facilitator Superfamily LI89_RS10050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS10050 PF03466 LysR substrate binding domain LI89_RS10055 PF00356 Bacterial regulatory proteins, lacI family LI89_RS10060 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LI89_RS10060 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LI89_RS10065 PF00877 NlpC/P60 family LI89_RS10070 PF00462 Glutaredoxin LI89_RS10075 PF00929 Exonuclease LI89_RS10080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LI89_RS10085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LI89_RS10090 PF00440 Bacterial regulatory proteins, tetR family LI89_RS10090 PF16925 Tetracyclin repressor-like, C-terminal domain LI89_RS10095 PF08019 Phosphoethanolamine transferase EptA/EptB LI89_RS10095 PF00884 Sulfatase LI89_RS10100 PF06945 Protein of unknown function (DUF1289) LI89_RS10105 PF00248 Aldo/keto reductase family LI89_RS10110 PF04632 Fusaric acid resistance protein family LI89_RS10115 PF00529 HlyD membrane-fusion protein of T1SS LI89_RS10115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LI89_RS10120 PF07869 Protein of unknown function (DUF1656) LI89_RS10125 PF01047 MarR family LI89_RS10130 PF05433 Glycine zipper 2TM domain LI89_RS10135 PF03702 Anhydro-N-acetylmuramic acid kinase LI89_RS10140 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme LI89_RS10145 PF01243 Pyridoxamine 5'-phosphate oxidase LI89_RS10145 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LI89_RS10150 PF00579 tRNA synthetases class I (W and Y) LI89_RS10150 PF01479 S4 domain LI89_RS10155 PF08543 Phosphomethylpyrimidine kinase LI89_RS10160 PF02798 Glutathione S-transferase, N-terminal domain LI89_RS10160 PF00043 Glutathione S-transferase, C-terminal domain LI89_RS10165 PF11656 YjbD family (DUF3811) LI89_RS10170 PF04893 Yip1 domain LI89_RS10180 PF00854 POT family LI89_RS10185 PF03466 LysR substrate binding domain LI89_RS10185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS10200 PF00005 ABC transporter LI89_RS10205 PF00005 ABC transporter LI89_RS10205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LI89_RS10210 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS10210 PF12911 N-terminal TM domain of oligopeptide transport permease C LI89_RS10215 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS10220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LI89_RS10225 PF02917 Pertussis toxin, subunit 1 LI89_RS10235 PF00158 Sigma-54 interaction domain LI89_RS10235 PF02954 Bacterial regulatory protein, Fis family LI89_RS10240 PF04012 PspA/IM30 family LI89_RS10245 PF06667 Phage shock protein B LI89_RS10250 PF04024 PspC domain LI89_RS10260 PF04317 YcjX-like family, DUF463 LI89_RS10265 PF05128 Domain of unknown function (DUF697) LI89_RS10270 PF08808 RES domain LI89_RS10275 PF09722 Protein of unknown function (DUF2384) LI89_RS10280 PF00158 Sigma-54 interaction domain LI89_RS10280 PF18024 Helix-turn-helix domain LI89_RS10285 PF08534 Redoxin LI89_RS10290 PF13378 Enolase C-terminal domain-like LI89_RS10290 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LI89_RS10295 PF00246 Zinc carboxypeptidase LI89_RS10300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LI89_RS10315 PF01544 CorA-like Mg2+ transporter protein LI89_RS10320 PF01171 PP-loop family LI89_RS10325 PF00874 PRD domain LI89_RS10325 PF03123 CAT RNA binding domain LI89_RS10330 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LI89_RS10330 PF00367 phosphotransferase system, EIIB LI89_RS10330 PF02378 Phosphotransferase system, EIIC LI89_RS10335 PF00232 Glycosyl hydrolase family 1 LI89_RS10340 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LI89_RS10340 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LI89_RS10340 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LI89_RS10340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LI89_RS10340 PF10371 Domain of unknown function LI89_RS10345 PF00893 Small Multidrug Resistance protein LI89_RS10350 PF02308 MgtC family LI89_RS10355 PF03891 Domain of unknown function (DUF333) LI89_RS10360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LI89_RS10360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LI89_RS10365 PF11739 Dicarboxylate transport LI89_RS10370 PF13617 YnbE-like lipoprotein LI89_RS10375 PF07027 Protein of unknown function (DUF1318) LI89_RS10380 PF07690 Major Facilitator Superfamily LI89_RS10385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LI89_RS10385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LI89_RS10390 PF01232 Mannitol dehydrogenase Rossmann domain LI89_RS10390 PF08125 Mannitol dehydrogenase C-terminal domain LI89_RS10395 PF04198 Putative sugar-binding domain LI89_RS10400 PF02525 Flavodoxin-like fold LI89_RS10405 PF04408 Helicase associated domain (HA2) LI89_RS10405 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LI89_RS10405 PF00271 Helicase conserved C-terminal domain LI89_RS10405 PF00270 DEAD/DEAH box helicase LI89_RS10405 PF11898 Domain of unknown function (DUF3418) LI89_RS10420 PF00089 Trypsin LI89_RS10430 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LI89_RS10435 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS10435 PF00672 HAMP domain LI89_RS10435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS10440 PF00486 Transcriptional regulatory protein, C terminal LI89_RS10440 PF00072 Response regulator receiver domain LI89_RS10450 PF13520 Amino acid permease LI89_RS10455 PF07338 Protein of unknown function (DUF1471) LI89_RS10465 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LI89_RS10465 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LI89_RS10465 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LI89_RS10470 PF02233 NAD(P) transhydrogenase beta subunit LI89_RS10475 PF00582 Universal stress protein family LI89_RS10480 PF13545 Crp-like helix-turn-helix domain LI89_RS10480 PF00027 Cyclic nucleotide-binding domain LI89_RS10485 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LI89_RS10485 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LI89_RS10500 PF06445 GyrI-like small molecule binding domain LI89_RS10505 PF03466 LysR substrate binding domain LI89_RS10505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS10515 PF00245 Alkaline phosphatase LI89_RS10520 PF00294 pfkB family carbohydrate kinase LI89_RS10525 PF07690 Major Facilitator Superfamily LI89_RS10545 PF13419 Haloacid dehalogenase-like hydrolase LI89_RS10550 PF01842 ACT domain LI89_RS10555 PF00205 Thiamine pyrophosphate enzyme, central domain LI89_RS10555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LI89_RS10555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LI89_RS10575 PF07690 Major Facilitator Superfamily LI89_RS10580 PF00459 Inositol monophosphatase family LI89_RS10585 PF00356 Bacterial regulatory proteins, lacI family LI89_RS10590 PF01048 Phosphorylase superfamily LI89_RS10590 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus LI89_RS10595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS10595 PF03466 LysR substrate binding domain LI89_RS10600 PF05958 tRNA (Uracil-5-)-methyltransferase LI89_RS10610 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS10615 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS10620 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS10625 PF01037 Lrp/AsnC ligand binding domain LI89_RS10635 PF07992 Pyridine nucleotide-disulphide oxidoreductase LI89_RS10635 PF18113 Rubredoxin binding C-terminal domain LI89_RS10640 PF00258 Flavodoxin LI89_RS10640 PF00301 Rubredoxin LI89_RS10640 PF00753 Metallo-beta-lactamase superfamily LI89_RS10645 PF00158 Sigma-54 interaction domain LI89_RS10645 PF01590 GAF domain LI89_RS10665 PF02798 Glutathione S-transferase, N-terminal domain LI89_RS10695 PF07338 Protein of unknown function (DUF1471) LI89_RS10700 PF07690 Major Facilitator Superfamily LI89_RS10705 PF00106 short chain dehydrogenase LI89_RS10710 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LI89_RS10720 PF06932 Protein of unknown function (DUF1283) LI89_RS10725 PF06649 Protein of unknown function (DUF1161) LI89_RS10735 PF00654 Voltage gated chloride channel LI89_RS10745 PF00480 ROK family LI89_RS10750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS10750 PF03466 LysR substrate binding domain LI89_RS10755 PF07690 Major Facilitator Superfamily LI89_RS10770 PF05472 DNA replication terminus site-binding protein (Ter protein) LI89_RS10775 PF00072 Response regulator receiver domain LI89_RS10775 PF00196 Bacterial regulatory proteins, luxR family LI89_RS10780 PF10415 Fumarase C C-terminus LI89_RS10780 PF00206 Lyase LI89_RS10785 PF01238 Phosphomannose isomerase type I LI89_RS10790 PF06097 Bacterial protein of unknown function (DUF945) LI89_RS10795 PF00132 Bacterial transferase hexapeptide (six repeats) LI89_RS10800 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LI89_RS10800 PF00356 Bacterial regulatory proteins, lacI family LI89_RS10805 PF00367 phosphotransferase system, EIIB LI89_RS10805 PF02378 Phosphotransferase system, EIIC LI89_RS10810 PF00155 Aminotransferase class I and II LI89_RS10815 PF00962 Adenosine/AMP deaminase LI89_RS10820 PF13593 SBF-like CPA transporter family (DUF4137) LI89_RS10825 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LI89_RS10825 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LI89_RS10830 PF02311 AraC-like ligand binding domain LI89_RS10830 PF12833 Helix-turn-helix domain LI89_RS10835 PF02653 Branched-chain amino acid transport system / permease component LI89_RS10840 PF00005 ABC transporter LI89_RS10845 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LI89_RS10850 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LI89_RS10855 PF11762 L-arabinose isomerase C-terminal domain LI89_RS10855 PF02610 L-arabinose isomerase LI89_RS10860 PF00005 ABC transporter LI89_RS10860 PF03412 Peptidase C39 family LI89_RS10860 PF00664 ABC transporter transmembrane region LI89_RS10875 PF01268 Formate--tetrahydrofolate ligase LI89_RS10880 PF10754 Protein of unknown function (DUF2569) LI89_RS10885 PF02508 Rnf-Nqr subunit, membrane protein LI89_RS10890 PF04060 Putative Fe-S cluster LI89_RS10895 PF10531 SLBB domain LI89_RS10895 PF13375 RnfC Barrel sandwich hybrid domain LI89_RS10895 PF13237 4Fe-4S dicluster domain LI89_RS10895 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LI89_RS10900 PF12833 Helix-turn-helix domain LI89_RS10900 PF06445 GyrI-like small molecule binding domain LI89_RS10905 PF03116 NQR2, RnfD, RnfE family LI89_RS10910 PF04205 FMN-binding domain LI89_RS10915 PF02508 Rnf-Nqr subunit, membrane protein LI89_RS10920 PF10576 Iron-sulfur binding domain of endonuclease III LI89_RS10920 PF00730 HhH-GPD superfamily base excision DNA repair protein LI89_RS10920 PF00633 Helix-hairpin-helix motif LI89_RS10935 PF00384 Molybdopterin oxidoreductase LI89_RS10940 PF00773 RNB domain LI89_RS10940 PF08206 Ribonuclease B OB domain LI89_RS10940 PF00575 S1 RNA binding domain LI89_RS10945 PF02554 Carbon starvation protein CstA LI89_RS10945 PF13722 5TM C-terminal transporter carbon starvation CstA LI89_RS10950 PF04328 Selenoprotein, putative LI89_RS10955 PF00923 Transaldolase/Fructose-6-phosphate aldolase LI89_RS10960 PF00455 DeoR C terminal sensor domain LI89_RS10960 PF08220 DeoR-like helix-turn-helix domain LI89_RS10970 PF00596 Class II Aldolase and Adducin N-terminal domain LI89_RS10975 PF05433 Glycine zipper 2TM domain LI89_RS10980 PF01253 Translation initiation factor SUI1 LI89_RS10985 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LI89_RS10990 PF07338 Protein of unknown function (DUF1471) LI89_RS10995 PF03594 Benzoate membrane transport protein LI89_RS11000 PF01381 Helix-turn-helix LI89_RS11000 PF07883 Cupin domain LI89_RS11010 PF18073 Rubredoxin metal binding domain LI89_RS11015 PF06305 Lipopolysaccharide assembly protein A domain LI89_RS11020 PF01569 PAP2 superfamily LI89_RS11025 PF00925 GTP cyclohydrolase II LI89_RS11030 PF00330 Aconitase family (aconitate hydratase) LI89_RS11030 PF00694 Aconitase C-terminal domain LI89_RS11045 PF00589 Phage integrase family LI89_RS11045 PF02899 Phage integrase, N-terminal SAM-like domain LI89_RS11090 PF00239 Resolvase, N terminal domain LI89_RS11090 PF02796 Helix-turn-helix domain of resolvase LI89_RS11100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS11100 PF03466 LysR substrate binding domain LI89_RS11105 PF08272 Topoisomerase I zinc-ribbon-like LI89_RS11105 PF01131 DNA topoisomerase LI89_RS11105 PF01751 Toprim domain LI89_RS11105 PF01396 Topoisomerase DNA binding C4 zinc finger LI89_RS11110 PF10692 Protein of unknown function (DUF2498) LI89_RS11115 PF08496 Peptidase family S49 N-terminal LI89_RS11115 PF01343 Peptidase family S49 LI89_RS11120 PF00106 short chain dehydrogenase LI89_RS11125 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LI89_RS11125 PF12557 Cob(I)alamin adenosyltransferase N terminal LI89_RS11135 PF01479 S4 domain LI89_RS11135 PF00849 RNA pseudouridylate synthase LI89_RS11140 PF01300 Telomere recombination LI89_RS11145 PF02811 PHP domain LI89_RS11150 PF00425 chorismate binding enzyme LI89_RS11150 PF04715 Anthranilate synthase component I, N terminal region LI89_RS11155 PF00117 Glutamine amidotransferase class-I LI89_RS11160 PF00591 Glycosyl transferase family, a/b domain LI89_RS11160 PF02885 Glycosyl transferase family, helical bundle domain LI89_RS11165 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LI89_RS11165 PF00218 Indole-3-glycerol phosphate synthase LI89_RS11170 PF00291 Pyridoxal-phosphate dependent enzyme LI89_RS11175 PF00290 Tryptophan synthase alpha chain LI89_RS11185 PF03922 OmpW family LI89_RS11205 PF04279 Intracellular septation protein A LI89_RS11210 PF03061 Thioesterase superfamily LI89_RS11215 PF03544 Gram-negative bacterial TonB protein C-terminal LI89_RS11220 PF03795 YCII-related domain LI89_RS11235 PF13091 PLD-like domain LI89_RS11235 PF13396 Phospholipase_D-nuclease N-terminal LI89_RS11240 PF04269 Protein of unknown function, DUF440 LI89_RS11245 PF00005 ABC transporter LI89_RS11245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LI89_RS11250 PF00005 ABC transporter LI89_RS11250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LI89_RS11255 PF12911 N-terminal TM domain of oligopeptide transport permease C LI89_RS11255 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS11260 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS11265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LI89_RS11270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LI89_RS11275 PF01914 MarC family integral membrane protein LI89_RS11280 PF00465 Iron-containing alcohol dehydrogenase LI89_RS11280 PF00171 Aldehyde dehydrogenase family LI89_RS11285 PF00265 Thymidine kinase LI89_RS11295 PF00816 H-NS histone family LI89_RS11300 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LI89_RS11300 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LI89_RS11300 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LI89_RS11305 PF00072 Response regulator receiver domain LI89_RS11310 PF01734 Patatin-like phospholipase LI89_RS11320 PF02810 SEC-C motif LI89_RS11325 PF00551 Formyl transferase LI89_RS11325 PF01842 ACT domain LI89_RS11355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS11355 PF03466 LysR substrate binding domain LI89_RS11360 PF03372 Endonuclease/Exonuclease/phosphatase family LI89_RS11365 PF00293 NUDIX domain LI89_RS11370 PF07383 Protein of unknown function (DUF1496) LI89_RS11375 PF01751 Toprim domain LI89_RS11375 PF01131 DNA topoisomerase LI89_RS11380 PF02769 AIR synthase related protein, C-terminal domain LI89_RS11380 PF00586 AIR synthase related protein, N-terminal domain LI89_RS11385 PF00881 Nitroreductase family LI89_RS11390 PF01343 Peptidase family S49 LI89_RS11395 PF00710 Asparaginase, N-terminal LI89_RS11395 PF17763 Glutaminase/Asparaginase C-terminal domain LI89_RS11400 PF00857 Isochorismatase family LI89_RS11405 PF07023 Protein of unknown function (DUF1315) LI89_RS11410 PF01641 SelR domain LI89_RS11415 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LI89_RS11415 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LI89_RS11420 PF01263 Aldose 1-epimerase LI89_RS11425 PF06629 MltA-interacting protein MipA LI89_RS11430 PF08298 PrkA AAA domain LI89_RS11430 PF06798 PrkA serine protein kinase C-terminal domain LI89_RS11435 PF04285 Protein of unknown function (DUF444) LI89_RS11450 PF03466 LysR substrate binding domain LI89_RS11450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS11455 PF05726 Pirin C-terminal cupin domain LI89_RS11455 PF02678 Pirin LI89_RS11460 PF00563 EAL domain LI89_RS11460 PF13426 PAS domain LI89_RS11460 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS11465 PF07690 Major Facilitator Superfamily LI89_RS11470 PF01168 Alanine racemase, N-terminal domain LI89_RS11470 PF00842 Alanine racemase, C-terminal domain LI89_RS11475 PF01266 FAD dependent oxidoreductase LI89_RS11480 PF04293 SpoVR like protein LI89_RS11485 PF00392 Bacterial regulatory proteins, gntR family LI89_RS11485 PF07840 FadR C-terminal domain LI89_RS11490 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LI89_RS11495 PF02600 Disulfide bond formation protein DsbB LI89_RS11500 PF00132 Bacterial transferase hexapeptide (six repeats) LI89_RS11500 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LI89_RS11510 PF03692 Putative zinc- or iron-chelating domain LI89_RS11515 PF01557 Fumarylacetoacetate (FAA) hydrolase family LI89_RS11520 PF13406 Transglycosylase SLT domain LI89_RS11525 PF05166 YcgL domain LI89_RS11535 PF03775 Septum formation inhibitor MinC, C-terminal domain LI89_RS11535 PF05209 Septum formation inhibitor MinC, N-terminal domain LI89_RS11540 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LI89_RS11545 PF03776 Septum formation topological specificity factor MinE LI89_RS11550 PF00570 HRDC domain LI89_RS11550 PF01612 3'-5' exonuclease LI89_RS11555 PF13193 AMP-binding enzyme C-terminal domain LI89_RS11555 PF00501 AMP-binding enzyme LI89_RS11560 PF03843 Outer membrane lipoprotein Slp family LI89_RS11565 PF00814 Glycoprotease family LI89_RS11570 PF04851 Type III restriction enzyme, res subunit LI89_RS11570 PF13307 Helicase C-terminal domain LI89_RS11575 PF01042 Endoribonuclease L-PSP LI89_RS11580 PF00893 Small Multidrug Resistance protein LI89_RS11585 PF00893 Small Multidrug Resistance protein LI89_RS11590 PF01081 KDPG and KHG aldolase LI89_RS11595 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LI89_RS11595 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LI89_RS11600 PF01380 SIS domain LI89_RS11600 PF01418 Helix-turn-helix domain, rpiR family LI89_RS11605 PF02887 Pyruvate kinase, alpha/beta domain LI89_RS11605 PF00224 Pyruvate kinase, barrel domain LI89_RS11610 PF03279 Bacterial lipid A biosynthesis acyltransferase LI89_RS11615 PF01551 Peptidase family M23 LI89_RS11615 PF08525 Opacity-associated protein A N-terminal motif LI89_RS11615 PF01476 LysM domain LI89_RS11620 PF01297 Zinc-uptake complex component A periplasmic LI89_RS11625 PF00005 ABC transporter LI89_RS11630 PF00950 ABC 3 transport family LI89_RS11635 PF00854 POT family LI89_RS11640 PF05491 RuvB C-terminal winged helix domain LI89_RS11640 PF05496 Holliday junction DNA helicase RuvB P-loop domain LI89_RS11640 PF17864 RuvB AAA lid domain LI89_RS11645 PF07499 RuvA, C-terminal domain LI89_RS11645 PF01330 RuvA N terminal domain LI89_RS11650 PF02075 Crossover junction endodeoxyribonuclease RuvC LI89_RS11655 PF01709 Transcriptional regulator LI89_RS11660 PF00293 NUDIX domain LI89_RS11665 PF02938 GAD domain LI89_RS11665 PF01336 OB-fold nucleic acid binding domain LI89_RS11665 PF00152 tRNA synthetases class II (D, K and N) LI89_RS11670 PF00857 Isochorismatase family LI89_RS11675 PF01904 Protein of unknown function DUF72 LI89_RS11680 PF01124 MAPEG family LI89_RS11685 PF13649 Methyltransferase domain LI89_RS11690 PF08003 Protein of unknown function (DUF1698) LI89_RS11695 PF03932 CutC family LI89_RS11700 PF06185 YecM protein LI89_RS11705 PF05746 DALR anticodon binding domain LI89_RS11705 PF00750 tRNA synthetases class I (R) LI89_RS11705 PF03485 Arginyl tRNA synthetase N terminal domain LI89_RS11710 PF03023 Lipid II flippase MurJ LI89_RS11715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LI89_RS11720 PF04337 Protein of unknown function, DUF480 LI89_RS11725 PF13302 Acetyltransferase (GNAT) domain LI89_RS11750 PF07690 Major Facilitator Superfamily LI89_RS11755 PF07273 Protein of unknown function (DUF1439) LI89_RS11760 PF02613 Nitrate reductase delta subunit LI89_RS11765 PF02811 PHP domain LI89_RS11770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LI89_RS11780 PF03009 Glycerophosphoryl diester phosphodiesterase family LI89_RS11790 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS11795 PF00916 Sulfate permease family LI89_RS11795 PF01740 STAS domain LI89_RS11800 PF00793 DAHP synthetase I family LI89_RS11805 PF13369 Transglutaminase-like superfamily LI89_RS11810 PF04247 Invasion gene expression up-regulator, SirB LI89_RS11815 PF13847 Methyltransferase domain LI89_RS11815 PF17827 PrmC N-terminal domain LI89_RS11820 PF03462 PCRF domain LI89_RS11820 PF00472 RF-1 domain LI89_RS11825 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LI89_RS11825 PF01488 Shikimate / quinate 5-dehydrogenase LI89_RS11825 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LI89_RS11830 PF03550 Outer membrane lipoprotein LolB LI89_RS11835 PF08544 GHMP kinases C terminal LI89_RS11835 PF00288 GHMP kinases N terminal domain LI89_RS11840 PF14572 Phosphoribosyl synthetase-associated domain LI89_RS11840 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LI89_RS11845 PF10762 Protein of unknown function (DUF2583) LI89_RS11850 PF01195 Peptidyl-tRNA hydrolase LI89_RS11860 PF01926 50S ribosome-binding GTPase LI89_RS11860 PF06071 Protein of unknown function (DUF933) LI89_RS11865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LI89_RS11865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LI89_RS11870 PF07690 Major Facilitator Superfamily LI89_RS11875 PF13378 Enolase C-terminal domain-like LI89_RS11875 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LI89_RS11880 PF01081 KDPG and KHG aldolase LI89_RS11885 PF05035 2-keto-3-deoxy-galactonokinase LI89_RS11890 PF07729 FCD domain LI89_RS11890 PF00392 Bacterial regulatory proteins, gntR family LI89_RS11895 PF00144 Beta-lactamase LI89_RS11900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS11900 PF03466 LysR substrate binding domain LI89_RS11905 PF04391 Protein of unknown function (DUF533) LI89_RS11910 PF00561 alpha/beta hydrolase fold LI89_RS11915 PF00959 Phage lysozyme LI89_RS11925 PF10753 Toxin GhoT_OrtT LI89_RS11930 PF06530 Phage antitermination protein Q LI89_RS11940 PF00132 Bacterial transferase hexapeptide (six repeats) LI89_RS11950 PF12848 ABC transporter LI89_RS11950 PF00005 ABC transporter LI89_RS11970 PF01527 Transposase LI89_RS11975 PF00665 Integrase core domain LI89_RS12005 PF13936 Helix-turn-helix domain LI89_RS12005 PF00665 Integrase core domain LI89_RS12010 PF01757 Acyltransferase family LI89_RS12015 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LI89_RS12090 PF00589 Phage integrase family LI89_RS12090 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LI89_RS12095 PF10709 Protein of unknown function (DUF2511) LI89_RS12100 PF05425 Copper resistance protein D LI89_RS12105 PF04234 CopC domain LI89_RS12110 PF00210 Ferritin-like domain LI89_RS12115 PF06440 DNA polymerase III, theta subunit LI89_RS12120 PF00561 alpha/beta hydrolase fold LI89_RS12125 PF00929 Exonuclease LI89_RS12130 PF00326 Prolyl oligopeptidase family LI89_RS12130 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LI89_RS12135 PF13995 YebF-like protein LI89_RS12140 PF04266 ASCH domain LI89_RS12145 PF07130 YebG protein LI89_RS12150 PF03880 DbpA RNA binding domain LI89_RS12150 PF00271 Helicase conserved C-terminal domain LI89_RS12150 PF00270 DEAD/DEAH box helicase LI89_RS12155 PF02222 ATP-grasp domain LI89_RS12160 PF03701 Uncharacterised protein family (UPF0181) LI89_RS12165 PF00425 chorismate binding enzyme LI89_RS12165 PF04715 Anthranilate synthase component I, N terminal region LI89_RS12170 PF00293 NUDIX domain LI89_RS12175 PF03315 Serine dehydratase beta chain LI89_RS12175 PF03313 Serine dehydratase alpha chain LI89_RS12180 PF03471 Transporter associated domain LI89_RS12180 PF03741 Integral membrane protein TerC family LI89_RS12185 PF03610 PTS system fructose IIA component LI89_RS12185 PF03830 PTS system sorbose subfamily IIB component LI89_RS12190 PF03609 PTS system sorbose-specific iic component LI89_RS12195 PF03613 PTS system mannose/fructose/sorbose family IID component LI89_RS12200 PF06173 Protein of unknown function (DUF986) LI89_RS12205 PF02659 Putative manganese efflux pump LI89_RS12210 PF00593 TonB dependent receptor LI89_RS12210 PF07715 TonB-dependent Receptor Plug Domain LI89_RS12215 PF08448 PAS fold LI89_RS12215 PF05231 MASE1 LI89_RS12215 PF00563 EAL domain LI89_RS12215 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS12215 PF13426 PAS domain LI89_RS12215 PF08447 PAS fold LI89_RS12225 PF13847 Methyltransferase domain LI89_RS12230 PF03717 Penicillin-binding Protein dimerisation domain LI89_RS12230 PF00905 Penicillin binding protein transpeptidase domain LI89_RS12235 PF02578 Multi-copper polyphenol oxidoreductase laccase LI89_RS12240 PF00313 'Cold-shock' DNA-binding domain LI89_RS12245 PF10736 Protein of unknown function (DUF2627) LI89_RS12250 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LI89_RS12255 PF00324 Amino acid permease LI89_RS12270 PF13974 YebO-like protein LI89_RS12275 PF13996 YobH-like protein LI89_RS12280 PF10964 Protein of unknown function (DUF2766) LI89_RS12285 PF12833 Helix-turn-helix domain LI89_RS12300 PF13520 Amino acid permease LI89_RS12310 PF00664 ABC transporter transmembrane region LI89_RS12310 PF00005 ABC transporter LI89_RS12320 PF03372 Endonuclease/Exonuclease/phosphatase family LI89_RS12330 PF00563 EAL domain LI89_RS12330 PF01590 GAF domain LI89_RS12330 PF00360 Phytochrome region LI89_RS12330 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS12340 PF06411 HdeA/HdeB family LI89_RS12345 PF07007 Lysozyme inhibitor LprI LI89_RS12360 PF07690 Major Facilitator Superfamily LI89_RS12370 PF13378 Enolase C-terminal domain-like LI89_RS12370 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LI89_RS12375 PF07729 FCD domain LI89_RS12375 PF00392 Bacterial regulatory proteins, gntR family LI89_RS12380 PF00107 Zinc-binding dehydrogenase LI89_RS12380 PF08240 Alcohol dehydrogenase GroES-like domain LI89_RS12385 PF08125 Mannitol dehydrogenase C-terminal domain LI89_RS12385 PF01232 Mannitol dehydrogenase Rossmann domain LI89_RS12390 PF08666 SAF domain LI89_RS12390 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LI89_RS12395 PF00005 ABC transporter LI89_RS12400 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS12405 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS12425 PF01638 HxlR-like helix-turn-helix LI89_RS12430 PF05368 NmrA-like family LI89_RS12435 PF01053 Cys/Met metabolism PLP-dependent enzyme LI89_RS12440 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family LI89_RS12445 PF03466 LysR substrate binding domain LI89_RS12445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS12450 PF04971 Bacteriophage P21 holin S LI89_RS12455 PF00959 Phage lysozyme LI89_RS12465 PF00717 Peptidase S24-like LI89_RS12470 PF13438 Domain of unknown function (DUF4113) LI89_RS12470 PF00817 impB/mucB/samB family LI89_RS12470 PF11799 impB/mucB/samB family C-terminal domain LI89_RS12485 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LI89_RS12485 PF00356 Bacterial regulatory proteins, lacI family LI89_RS12490 PF08244 Glycosyl hydrolases family 32 C terminal LI89_RS12490 PF00251 Glycosyl hydrolases family 32 N-terminal domain LI89_RS12495 PF01306 LacY proton/sugar symporter LI89_RS12520 PF00180 Isocitrate/isopropylmalate dehydrogenase LI89_RS12525 PF00849 RNA pseudouridylate synthase LI89_RS12530 PF00293 NUDIX domain LI89_RS12540 PF04356 Protein of unknown function (DUF489) LI89_RS12545 PF08328 Adenylosuccinate lyase C-terminal LI89_RS12545 PF00206 Lyase LI89_RS12555 PF00072 Response regulator receiver domain LI89_RS12555 PF00486 Transcriptional regulatory protein, C terminal LI89_RS12560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS12560 PF08918 PhoQ Sensor LI89_RS12565 PF08007 Cupin superfamily protein LI89_RS12570 PF01546 Peptidase family M20/M25/M40 LI89_RS12570 PF07687 Peptidase dimerisation domain LI89_RS12575 PF02146 Sir2 family LI89_RS12580 PF00480 ROK family LI89_RS12590 PF02687 FtsX-like permease family LI89_RS12590 PF12704 MacB-like periplasmic core domain LI89_RS12595 PF00005 ABC transporter LI89_RS12600 PF02687 FtsX-like permease family LI89_RS12600 PF12704 MacB-like periplasmic core domain LI89_RS12605 PF00271 Helicase conserved C-terminal domain LI89_RS12605 PF03461 TRCF domain LI89_RS12605 PF00270 DEAD/DEAH box helicase LI89_RS12605 PF02559 CarD-like/TRCF domain LI89_RS12605 PF17757 UvrB interaction domain LI89_RS12610 PF05433 Glycine zipper 2TM domain LI89_RS12615 PF07992 Pyridine nucleotide-disulphide oxidoreductase LI89_RS12620 PF05728 Uncharacterised protein family (UPF0227) LI89_RS12625 PF00933 Glycosyl hydrolase family 3 N terminal domain LI89_RS12630 PF01636 Phosphotransferase enzyme family LI89_RS12635 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LI89_RS12635 PF13036 Peptidoglycan-synthase activator LpoB LI89_RS12640 PF07233 Protein of unknown function (DUF1425) LI89_RS12645 PF01230 HIT domain LI89_RS12650 PF08501 Shikimate dehydrogenase substrate binding domain LI89_RS12655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LI89_RS12655 PF12793 Sugar transport-related sRNA regulator N-term LI89_RS12660 PF00367 phosphotransferase system, EIIB LI89_RS12660 PF02378 Phosphotransferase system, EIIC LI89_RS12665 PF01026 TatD related DNase LI89_RS12670 PF09115 DNA polymerase III, delta subunit, C terminal LI89_RS12675 PF02223 Thymidylate kinase LI89_RS12680 PF02618 YceG-like family LI89_RS12685 PF01063 Amino-transferase class IV LI89_RS12690 PF02801 Beta-ketoacyl synthase, C-terminal domain LI89_RS12690 PF00109 Beta-ketoacyl synthase, N-terminal domain LI89_RS12695 PF00550 Phosphopantetheine attachment site LI89_RS12705 PF00698 Acyl transferase domain LI89_RS12710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LI89_RS12710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LI89_RS12715 PF02504 Fatty acid synthesis protein LI89_RS12720 PF01783 Ribosomal L32p protein family LI89_RS12725 PF02620 Large ribosomal RNA subunit accumulation protein YceD LI89_RS12730 PF02545 Maf-like protein LI89_RS12735 PF00849 RNA pseudouridylate synthase LI89_RS12735 PF01479 S4 domain LI89_RS12740 PF00575 S1 RNA binding domain LI89_RS12740 PF10150 Ribonuclease E/G family LI89_RS12740 PF10150 Ribonuclease E/G family LI89_RS12740 PF00575 S1 RNA binding domain LI89_RS12740 PF12111 Polyribonucleotide phosphorylase C terminal LI89_RS12740 PF12111 Polyribonucleotide phosphorylase C terminal LI89_RS12745 PF03992 Antibiotic biosynthesis monooxygenase LI89_RS12750 PF01979 Amidohydrolase family LI89_RS12755 PF06183 DinI-like family LI89_RS12760 PF13991 BssS protein family LI89_RS12765 PF01266 FAD dependent oxidoreductase LI89_RS12770 PF00196 Bacterial regulatory proteins, luxR family LI89_RS12775 PF01594 AI-2E family transporter LI89_RS12780 PF17773 UPF0176 acylphosphatase like domain LI89_RS12780 PF00581 Rhodanese-like domain LI89_RS12780 PF12368 Rhodanase C-terminal LI89_RS12785 PF01568 Molydopterin dinucleotide binding domain LI89_RS12785 PF00384 Molybdopterin oxidoreductase LI89_RS12785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS12790 PF03916 Polysulphide reductase, NrfD LI89_RS12795 PF13247 4Fe-4S dicluster domain LI89_RS12800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS12800 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS12805 PF00072 Response regulator receiver domain LI89_RS12805 PF00196 Bacterial regulatory proteins, luxR family LI89_RS12810 PF03279 Bacterial lipid A biosynthesis acyltransferase LI89_RS12815 PF07681 DoxX LI89_RS12820 PF07690 Major Facilitator Superfamily LI89_RS12825 PF00854 POT family LI89_RS12835 PF07119 Protein of unknown function (DUF1375) LI89_RS12840 PF00535 Glycosyl transferase family 2 LI89_RS12845 PF04349 Periplasmic glucan biosynthesis protein, MdoG LI89_RS12850 PF01757 Acyltransferase family LI89_RS12860 PF02080 TrkA-C domain LI89_RS12860 PF00999 Sodium/hydrogen exchanger family LI89_RS12860 PF03471 Transporter associated domain LI89_RS12870 PF00765 Autoinducer synthase LI89_RS12875 PF03472 Autoinducer binding domain LI89_RS12875 PF00196 Bacterial regulatory proteins, luxR family LI89_RS12885 PF03918 Cytochrome C biogenesis protein LI89_RS12890 PF08534 Redoxin LI89_RS12895 PF01578 Cytochrome C assembly protein LI89_RS12895 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LI89_RS12900 PF03916 Polysulphide reductase, NrfD LI89_RS12905 PF00037 4Fe-4S binding domain LI89_RS12905 PF13247 4Fe-4S dicluster domain LI89_RS12910 PF13435 Cytochrome c554 and c-prime LI89_RS12910 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) LI89_RS12915 PF02335 Cytochrome c552 LI89_RS12930 PF04358 DsrC like protein LI89_RS12935 PF00708 Acylphosphatase LI89_RS12950 PF17785 PUA-like domain LI89_RS12950 PF10672 S-adenosylmethionine-dependent methyltransferase LI89_RS12955 PF08755 Hemimethylated DNA-binding protein YccV like LI89_RS12960 PF13380 CoA binding domain LI89_RS12965 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LI89_RS12970 PF02142 MGS-like domain LI89_RS12975 PF12462 DNA helicase IV / RNA helicase N terminal LI89_RS12975 PF00580 UvrD/REP helicase N-terminal domain LI89_RS12975 PF13361 UvrD-like helicase C-terminal domain LI89_RS12980 PF03733 Inner membrane component domain LI89_RS12985 PF12805 FUSC-like inner membrane protein yccS LI89_RS12990 PF04994 TfoX C-terminal domain LI89_RS12990 PF04993 TfoX N-terminal domain LI89_RS12995 PF03846 Cell division inhibitor SulA LI89_RS13000 PF00691 OmpA family LI89_RS13000 PF01389 OmpA-like transmembrane domain LI89_RS13005 PF06303 MatP N-terminal domain LI89_RS13005 PF17414 MatP C-terminal ribbon-helix-helix domain LI89_RS13010 PF13654 AAA domain LI89_RS13010 PF05362 Lon protease (S16) C-terminal proteolytic domain LI89_RS13015 PF07977 FabA-like domain LI89_RS13025 PF00109 Beta-ketoacyl synthase, N-terminal domain LI89_RS13025 PF02801 Beta-ketoacyl synthase, C-terminal domain LI89_RS13030 PF03886 ABC-type transport auxiliary lipoprotein component LI89_RS13035 PF02470 MlaD protein LI89_RS13040 PF04403 Paraquat-inducible protein A LI89_RS13045 PF16326 ABC transporter C-terminal domain LI89_RS13045 PF12848 ABC transporter LI89_RS13045 PF00005 ABC transporter LI89_RS13050 PF01170 Putative RNA methylase family UPF0020 LI89_RS13050 PF10672 S-adenosylmethionine-dependent methyltransferase LI89_RS13050 PF02926 THUMP domain LI89_RS13055 PF03473 MOSC domain LI89_RS13055 PF03476 MOSC N-terminal beta barrel domain LI89_RS13055 PF00111 2Fe-2S iron-sulfur cluster binding domain LI89_RS13060 PF07126 Cell-division protein ZapC LI89_RS13065 PF01180 Dihydroorotate dehydrogenase LI89_RS13070 PF01433 Peptidase family M1 domain LI89_RS13070 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LI89_RS13070 PF11940 Domain of unknown function (DUF3458) Ig-like fold LI89_RS13075 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LI89_RS13075 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LI89_RS13080 PF01336 OB-fold nucleic acid binding domain LI89_RS13080 PF00152 tRNA synthetases class II (D, K and N) LI89_RS13085 PF00267 Gram-negative porin LI89_RS13090 PF00155 Aminotransferase class I and II LI89_RS13095 PF12792 CSS motif domain associated with EAL LI89_RS13095 PF00563 EAL domain LI89_RS13100 PF00753 Metallo-beta-lactamase superfamily LI89_RS13105 PF05951 Bacterial protein of unknown function (DUF882) LI89_RS13110 PF01471 Putative peptidoglycan binding domain LI89_RS13110 PF03734 L,D-transpeptidase catalytic domain LI89_RS13115 PF16330 MukB hinge domain LI89_RS13115 PF04310 MukB N-terminal LI89_RS13120 PF04288 MukE-like family LI89_RS13125 PF17192 MukF middle domain LI89_RS13125 PF17193 MukF C-terminal domain LI89_RS13125 PF03882 MukF winged-helix domain LI89_RS13130 PF13847 Methyltransferase domain LI89_RS13135 PF02698 DUF218 domain LI89_RS13140 PF01636 Phosphotransferase enzyme family LI89_RS13145 PF02348 Cytidylyltransferase LI89_RS13150 PF03966 Trm112p-like protein LI89_RS13155 PF00313 'Cold-shock' DNA-binding domain LI89_RS13160 PF00313 'Cold-shock' DNA-binding domain LI89_RS13165 PF07063 Domain of unknown function (DUF1338) LI89_RS13170 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LI89_RS13175 PF00664 ABC transporter transmembrane region LI89_RS13175 PF00005 ABC transporter LI89_RS13180 PF00753 Metallo-beta-lactamase superfamily LI89_RS13180 PF03772 Competence protein LI89_RS13185 PF00216 Bacterial DNA-binding protein LI89_RS13190 PF00575 S1 RNA binding domain LI89_RS13195 PF02224 Cytidylate kinase LI89_RS13200 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LI89_RS13205 PF00266 Aminotransferase class-V LI89_RS13210 PF04239 Protein of unknown function (DUF421) LI89_RS13215 PF00710 Asparaginase, N-terminal LI89_RS13215 PF17763 Glutaminase/Asparaginase C-terminal domain LI89_RS13220 PF18381 YcaO cyclodehydratase C-terminal domain LI89_RS13220 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LI89_RS13225 PF01226 Formate/nitrite transporter LI89_RS13230 PF01228 Glycine radical LI89_RS13230 PF02901 Pyruvate formate lyase-like LI89_RS13235 PF04055 Radical SAM superfamily LI89_RS13240 PF07690 Major Facilitator Superfamily LI89_RS13245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LI89_RS13245 PF02403 Seryl-tRNA synthetase N-terminal domain LI89_RS13250 PF16193 AAA C-terminal domain LI89_RS13250 PF00004 ATPase family associated with various cellular activities (AAA) LI89_RS13250 PF12002 MgsA AAA+ ATPase C terminal LI89_RS13255 PF03548 Outer membrane lipoprotein carrier protein LolA LI89_RS13260 PF01580 FtsK/SpoIIIE family LI89_RS13260 PF09397 Ftsk gamma domain LI89_RS13260 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LI89_RS13260 PF17854 FtsK alpha domain LI89_RS13265 PF01037 Lrp/AsnC ligand binding domain LI89_RS13270 PF07992 Pyridine nucleotide-disulphide oxidoreductase LI89_RS13275 PF00005 ABC transporter LI89_RS13275 PF00664 ABC transporter transmembrane region LI89_RS13280 PF00664 ABC transporter transmembrane region LI89_RS13280 PF00005 ABC transporter LI89_RS13285 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LI89_RS13290 PF01176 Translation initiation factor 1A / IF-1 LI89_RS13295 PF00004 ATPase family associated with various cellular activities (AAA) LI89_RS13295 PF07724 AAA domain (Cdc48 subfamily) LI89_RS13295 PF17871 AAA lid domain LI89_RS13295 PF02861 Clp amino terminal domain, pathogenicity island component LI89_RS13295 PF10431 C-terminal, D2-small domain, of ClpB protein LI89_RS13300 PF02617 ATP-dependent Clp protease adaptor protein ClpS LI89_RS13305 PF00313 'Cold-shock' DNA-binding domain LI89_RS13310 PF02687 FtsX-like permease family LI89_RS13310 PF12704 MacB-like periplasmic core domain LI89_RS13310 PF00005 ABC transporter LI89_RS13315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LI89_RS13320 PF04393 Protein of unknown function (DUF535) LI89_RS13325 PF11398 Protein of unknown function (DUF2813) LI89_RS13330 PF03956 Lysine exporter LysO LI89_RS13335 PF03063 Prismane/CO dehydrogenase family LI89_RS13340 PF00175 Oxidoreductase NAD-binding domain LI89_RS13340 PF00970 Oxidoreductase FAD-binding domain LI89_RS13340 PF00111 2Fe-2S iron-sulfur cluster binding domain LI89_RS13345 PF00205 Thiamine pyrophosphate enzyme, central domain LI89_RS13345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LI89_RS13345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LI89_RS13350 PF04072 Leucine carboxyl methyltransferase LI89_RS13355 PF01212 Beta-eliminating lyase LI89_RS13360 PF11066 Protein of unknown function (DUF2867) LI89_RS13360 PF13460 NAD(P)H-binding LI89_RS13365 PF01370 NAD dependent epimerase/dehydratase family LI89_RS13370 PF12883 Protein of unknown function (DUF3828) LI89_RS13375 PF00005 ABC transporter LI89_RS13380 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS13385 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS13390 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS13400 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS13405 PF05958 tRNA (Uracil-5-)-methyltransferase LI89_RS13410 PF10767 Protein of unknown function (DUF2593) LI89_RS13415 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS13420 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS13425 PF00005 ABC transporter LI89_RS13425 PF08402 TOBE domain LI89_RS13430 PF13416 Bacterial extracellular solute-binding protein LI89_RS13435 PF10722 Putative bacterial sensory transduction regulator LI89_RS13440 PF07214 Protein of unknown function (DUF1418) LI89_RS13445 PF00462 Glutaredoxin LI89_RS13450 PF02080 TrkA-C domain LI89_RS13450 PF06826 Predicted Permease Membrane Region LI89_RS13460 PF01569 PAP2 superfamily LI89_RS13465 PF01791 DeoC/LacD family aldolase LI89_RS13470 PF08220 DeoR-like helix-turn-helix domain LI89_RS13470 PF00455 DeoR C terminal sensor domain LI89_RS13480 PF03315 Serine dehydratase beta chain LI89_RS13480 PF03313 Serine dehydratase alpha chain LI89_RS13485 PF00768 D-alanyl-D-alanine carboxypeptidase LI89_RS13485 PF07943 Penicillin-binding protein 5, C-terminal domain LI89_RS13490 PF00291 Pyridoxal-phosphate dependent enzyme LI89_RS13490 PF00571 CBS domain LI89_RS13495 PF01053 Cys/Met metabolism PLP-dependent enzyme LI89_RS13510 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS13515 PF09383 NIL domain LI89_RS13515 PF00005 ABC transporter LI89_RS13520 PF03180 NLPA lipoprotein LI89_RS13535 PF13417 Glutathione S-transferase, N-terminal domain LI89_RS13535 PF00043 Glutathione S-transferase, C-terminal domain LI89_RS13540 PF07715 TonB-dependent Receptor Plug Domain LI89_RS13540 PF00593 TonB dependent receptor LI89_RS13545 PF00005 ABC transporter LI89_RS13550 PF01032 FecCD transport family LI89_RS13555 PF00324 Amino acid permease LI89_RS13560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS13560 PF03466 LysR substrate binding domain LI89_RS13570 PF03601 Conserved hypothetical protein 698 LI89_RS13575 PF01261 Xylose isomerase-like TIM barrel LI89_RS13580 PF13953 PapC C-terminal domain LI89_RS13580 PF13954 PapC N-terminal domain LI89_RS13580 PF00577 Outer membrane usher protein LI89_RS13585 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS13585 PF02753 Pili assembly chaperone PapD, C-terminal domain LI89_RS13595 PF17550 Family of unknown function LI89_RS13600 PF00486 Transcriptional regulatory protein, C terminal LI89_RS13605 PF02378 Phosphotransferase system, EIIC LI89_RS13605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LI89_RS13610 PF00294 pfkB family carbohydrate kinase LI89_RS13615 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LI89_RS13615 PF00381 PTS HPr component phosphorylation site LI89_RS13620 PF13344 Haloacid dehalogenase-like hydrolase LI89_RS13620 PF00293 NUDIX domain LI89_RS13625 PF03264 NapC/NirT cytochrome c family, N-terminal region LI89_RS13630 PF00384 Molybdopterin oxidoreductase LI89_RS13630 PF18364 Molybdopterin oxidoreductase N-terminal domain LI89_RS13630 PF01568 Molydopterin dinucleotide binding domain LI89_RS13635 PF03692 Putative zinc- or iron-chelating domain LI89_RS13640 PF03222 Tryptophan/tyrosine permease family LI89_RS13645 PF01132 Elongation factor P (EF-P) OB domain LI89_RS13645 PF08207 Elongation factor P (EF-P) KOW-like domain LI89_RS13645 PF09285 Elongation factor P, C-terminal LI89_RS13650 PF03786 D-mannonate dehydratase (UxuA) LI89_RS13660 PF08125 Mannitol dehydrogenase C-terminal domain LI89_RS13660 PF01232 Mannitol dehydrogenase Rossmann domain LI89_RS13665 PF00392 Bacterial regulatory proteins, gntR family LI89_RS13665 PF07729 FCD domain LI89_RS13675 PF02492 CobW/HypB/UreG, nucleotide-binding domain LI89_RS13675 PF07683 Cobalamin synthesis protein cobW C-terminal domain LI89_RS13680 PF01569 PAP2 superfamily LI89_RS13685 PF00877 NlpC/P60 family LI89_RS13695 PF00563 EAL domain LI89_RS13695 PF12792 CSS motif domain associated with EAL LI89_RS13700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LI89_RS13705 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS13710 PF12911 N-terminal TM domain of oligopeptide transport permease C LI89_RS13710 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS13715 PF00005 ABC transporter LI89_RS13715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LI89_RS13720 PF13989 YejG-like protein LI89_RS13725 PF07690 Major Facilitator Superfamily LI89_RS13730 PF00849 RNA pseudouridylate synthase LI89_RS13730 PF01479 S4 domain LI89_RS13735 PF00271 Helicase conserved C-terminal domain LI89_RS13735 PF04851 Type III restriction enzyme, res subunit LI89_RS13740 PF01386 Ribosomal L25p family LI89_RS13745 PF04245 37-kD nucleoid-associated bacterial protein LI89_RS13750 PF07208 Protein of unknown function (DUF1414) LI89_RS13755 PF11893 Domain of unknown function (DUF3413) LI89_RS13755 PF00884 Sulfatase LI89_RS13770 PF00194 Eukaryotic-type carbonic anhydrase LI89_RS13775 PF00232 Glycosyl hydrolase family 1 LI89_RS13780 PF02378 Phosphotransferase system, EIIC LI89_RS13780 PF00367 phosphotransferase system, EIIB LI89_RS13780 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LI89_RS13785 PF01418 Helix-turn-helix domain, rpiR family LI89_RS13785 PF01380 SIS domain LI89_RS13800 PF01381 Helix-turn-helix LI89_RS13800 PF00717 Peptidase S24-like LI89_RS13805 PF06183 DinI-like family LI89_RS13810 PF01278 Omptin family LI89_RS13815 PF00672 HAMP domain LI89_RS13815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LI89_RS13815 PF02743 Cache domain LI89_RS13820 PF12706 Beta-lactamase superfamily domain LI89_RS13830 PF00144 Beta-lactamase LI89_RS13845 PF00267 Gram-negative porin LI89_RS13850 PF00529 HlyD membrane-fusion protein of T1SS LI89_RS13855 PF00005 ABC transporter LI89_RS13855 PF00664 ABC transporter transmembrane region LI89_RS13870 PF07690 Major Facilitator Superfamily LI89_RS13875 PF01627 Hpt domain LI89_RS13875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS13875 PF16359 RcsD-ABL domain LI89_RS13880 PF00072 Response regulator receiver domain LI89_RS13880 PF00196 Bacterial regulatory proteins, luxR family LI89_RS13885 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS13885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS13885 PF09456 RcsC Alpha-Beta-Loop (ABL) LI89_RS13885 PF00072 Response regulator receiver domain LI89_RS13890 PF03989 DNA gyrase C-terminal domain, beta-propeller LI89_RS13890 PF00521 DNA gyrase/topoisomerase IV, subunit A LI89_RS13900 PF00317 Ribonucleotide reductase, all-alpha domain LI89_RS13900 PF03477 ATP cone domain LI89_RS13900 PF02867 Ribonucleotide reductase, barrel domain LI89_RS13905 PF00268 Ribonucleotide reductase, small chain LI89_RS13910 PF00111 2Fe-2S iron-sulfur cluster binding domain LI89_RS13915 PF03974 Ecotin LI89_RS13920 PF00082 Subtilase family LI89_RS13930 PF00994 Probable molybdopterin binding domain LI89_RS13935 PF03222 Tryptophan/tyrosine permease family LI89_RS13940 PF07437 YfaZ precursor LI89_RS13945 PF06628 Catalase-related immune-responsive LI89_RS13945 PF00199 Catalase LI89_RS13950 PF00501 AMP-binding enzyme LI89_RS13950 PF13193 AMP-binding enzyme C-terminal domain LI89_RS13955 PF13378 Enolase C-terminal domain-like LI89_RS13960 PF00378 Enoyl-CoA hydratase/isomerase LI89_RS13965 PF12697 Alpha/beta hydrolase family LI89_RS13970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LI89_RS13970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LI89_RS13970 PF16582 Middle domain of thiamine pyrophosphate LI89_RS13975 PF00425 chorismate binding enzyme LI89_RS13980 PF05957 Bacterial protein of unknown function (DUF883) LI89_RS13985 PF00920 Dehydratase family LI89_RS13990 PF03928 Haem-degrading LI89_RS13995 PF07690 Major Facilitator Superfamily LI89_RS14000 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LI89_RS14000 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LI89_RS14005 PF00356 Bacterial regulatory proteins, lacI family LI89_RS14010 PF00106 short chain dehydrogenase LI89_RS14015 PF01202 Shikimate kinase LI89_RS14035 PF06496 Protein of unknown function (DUF1097) LI89_RS14045 PF00361 Proton-conducting membrane transporter LI89_RS14060 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LI89_RS14065 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LI89_RS14070 PF12838 4Fe-4S dicluster domain LI89_RS14075 PF00146 NADH dehydrogenase LI89_RS14080 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LI89_RS14080 PF01568 Molydopterin dinucleotide binding domain LI89_RS14080 PF00384 Molybdopterin oxidoreductase LI89_RS14080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS14085 PF10531 SLBB domain LI89_RS14085 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LI89_RS14085 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LI89_RS14095 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LI89_RS14095 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LI89_RS14100 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LI89_RS14105 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LI89_RS14110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS14110 PF03466 LysR substrate binding domain LI89_RS14115 PF00155 Aminotransferase class I and II LI89_RS14130 PF03600 Citrate transporter LI89_RS14130 PF02080 TrkA-C domain LI89_RS14140 PF13419 Haloacid dehalogenase-like hydrolase LI89_RS14145 PF03887 YfbU domain LI89_RS14150 PF04217 Protein of unknown function, DUF412 LI89_RS14155 PF00871 Acetokinase family LI89_RS14160 PF01515 Phosphate acetyl/butaryl transferase LI89_RS14160 PF07085 DRTGG domain LI89_RS14165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LI89_RS14165 PF00356 Bacterial regulatory proteins, lacI family LI89_RS14170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LI89_RS14180 PF03611 PTS system sugar-specific permease component LI89_RS14185 PF00293 NUDIX domain LI89_RS14190 PF12850 Calcineurin-like phosphoesterase superfamily domain LI89_RS14200 PF01370 NAD dependent epimerase/dehydratase family LI89_RS14200 PF08338 Domain of unknown function (DUF1731) LI89_RS14205 PF00005 ABC transporter LI89_RS14210 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS14215 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS14220 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS14225 PF02441 Flavoprotein LI89_RS14230 PF00156 Phosphoribosyl transferase domain LI89_RS14235 PF02674 Colicin V production protein LI89_RS14240 PF05036 Sporulation related domain LI89_RS14245 PF02875 Mur ligase family, glutamate ligase domain LI89_RS14245 PF08245 Mur ligase middle domain LI89_RS14250 PF17848 Acetyl-coA carboxylase zinc finger domain LI89_RS14250 PF01039 Carboxyl transferase domain LI89_RS14255 PF09335 SNARE associated Golgi protein LI89_RS14260 PF01416 tRNA pseudouridine synthase LI89_RS14265 PF02774 Semialdehyde dehydrogenase, dimerisation domain LI89_RS14265 PF01118 Semialdehyde dehydrogenase, NAD binding domain LI89_RS14270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LI89_RS14270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LI89_RS14270 PF11890 Domain of unknown function (DUF3410) LI89_RS14280 PF00892 EamA-like transporter family LI89_RS14285 PF00892 EamA-like transporter family LI89_RS14290 PF00155 Aminotransferase class I and II LI89_RS14295 PF00578 AhpC/TSA family LI89_RS14305 PF02683 Cytochrome C biogenesis protein transmembrane region LI89_RS14305 PF11412 Disulphide bond corrector protein DsbC LI89_RS14320 PF03600 Citrate transporter LI89_RS14325 PF00328 Histidine phosphatase superfamily (branch 2) LI89_RS14330 PF00356 Bacterial regulatory proteins, lacI family LI89_RS14335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LI89_RS14340 PF02378 Phosphotransferase system, EIIC LI89_RS14345 PF00232 Glycosyl hydrolase family 1 LI89_RS14350 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LI89_RS14360 PF01177 Asp/Glu/Hydantoin racemase LI89_RS14365 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS14370 PF00109 Beta-ketoacyl synthase, N-terminal domain LI89_RS14370 PF02801 Beta-ketoacyl synthase, C-terminal domain LI89_RS14375 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LI89_RS14375 PF01266 FAD dependent oxidoreductase LI89_RS14380 PF08891 YfcL protein LI89_RS14385 PF04315 Elongation factor P hydroxylase LI89_RS14390 PF01925 Sulfite exporter TauE/SafE LI89_RS14395 PF03411 Penicillin-insensitive murein endopeptidase LI89_RS14400 PF01264 Chorismate synthase LI89_RS14405 PF05175 Methyltransferase small domain LI89_RS14410 PF01713 Smr domain LI89_RS14415 PF00300 Histidine phosphatase superfamily (branch 1) LI89_RS14420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LI89_RS14420 PF00378 Enoyl-CoA hydratase/isomerase LI89_RS14420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LI89_RS14425 PF02803 Thiolase, C-terminal domain LI89_RS14425 PF00108 Thiolase, N-terminal domain LI89_RS14430 PF04175 Protein of unknown function (DUF406) LI89_RS14435 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LI89_RS14440 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LI89_RS14450 PF04333 MlaA lipoprotein LI89_RS14455 PF03918 Cytochrome C biogenesis protein LI89_RS14460 PF03918 Cytochrome C biogenesis protein LI89_RS14465 PF08534 Redoxin LI89_RS14470 PF01578 Cytochrome C assembly protein LI89_RS14470 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LI89_RS14475 PF03100 CcmE LI89_RS14480 PF04995 Heme exporter protein D (CcmD) LI89_RS14485 PF01578 Cytochrome C assembly protein LI89_RS14490 PF03379 CcmB protein LI89_RS14495 PF00005 ABC transporter LI89_RS14500 PF01226 Formate/nitrite transporter LI89_RS14530 PF00267 Gram-negative porin LI89_RS14540 PF01965 DJ-1/PfpI family LI89_RS14540 PF12833 Helix-turn-helix domain LI89_RS14545 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LI89_RS14545 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LI89_RS14550 PF00072 Response regulator receiver domain LI89_RS14550 PF00196 Bacterial regulatory proteins, luxR family LI89_RS14560 PF00577 Outer membrane usher protein LI89_RS14560 PF13954 PapC N-terminal domain LI89_RS14560 PF13953 PapC C-terminal domain LI89_RS14565 PF02753 Pili assembly chaperone PapD, C-terminal domain LI89_RS14565 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS14570 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS14570 PF02753 Pili assembly chaperone PapD, C-terminal domain LI89_RS14580 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS14580 PF02753 Pili assembly chaperone PapD, C-terminal domain LI89_RS14590 PF17287 POTRA domain LI89_RS14590 PF08479 POTRA domain, ShlB-type LI89_RS14590 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LI89_RS14595 PF13332 Hemagglutinin repeat LI89_RS14595 PF13018 Extended Signal Peptide of Type V secretion system LI89_RS14595 PF04829 Pre-toxin domain with VENN motif LI89_RS14595 PF05860 haemagglutination activity domain LI89_RS14605 PF05860 haemagglutination activity domain LI89_RS14605 PF04829 Pre-toxin domain with VENN motif LI89_RS14605 PF13332 Hemagglutinin repeat LI89_RS14605 PF13018 Extended Signal Peptide of Type V secretion system LI89_RS14620 PF04829 Pre-toxin domain with VENN motif LI89_RS14620 PF13332 Hemagglutinin repeat LI89_RS14620 PF05594 Haemagluttinin repeat LI89_RS14620 PF05860 haemagglutination activity domain LI89_RS14645 PF05594 Haemagluttinin repeat LI89_RS14645 PF13332 Hemagglutinin repeat LI89_RS14645 PF05860 haemagglutination activity domain LI89_RS14645 PF04829 Pre-toxin domain with VENN motif LI89_RS14645 PF14436 Bacterial EndoU nuclease LI89_RS14680 PF13332 Hemagglutinin repeat LI89_RS14680 PF05860 haemagglutination activity domain LI89_RS14680 PF04829 Pre-toxin domain with VENN motif LI89_RS14685 PF08274 PhnA Zinc-Ribbon LI89_RS14685 PF03831 PhnA domain LI89_RS14690 PF03551 Transcriptional regulator PadR-like family LI89_RS14700 PF00232 Glycosyl hydrolase family 1 LI89_RS14705 PF02378 Phosphotransferase system, EIIC LI89_RS14705 PF00367 phosphotransferase system, EIIB LI89_RS14710 PF00356 Bacterial regulatory proteins, lacI family LI89_RS14715 PF04264 YceI-like domain LI89_RS14720 PF01292 Prokaryotic cytochrome b561 LI89_RS14725 PF13472 GDSL-like Lipase/Acylhydrolase family LI89_RS14725 PF07859 alpha/beta hydrolase fold LI89_RS14745 PF00005 ABC transporter LI89_RS14750 PF02405 Permease MlaE LI89_RS14755 PF07690 Major Facilitator Superfamily LI89_RS14765 PF07969 Amidohydrolase family LI89_RS14770 PF00324 Amino acid permease LI89_RS14775 PF13406 Transglycosylase SLT domain LI89_RS14785 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS14790 PF00005 ABC transporter LI89_RS14795 PF01810 LysE type translocator LI89_RS14805 PF00232 Glycosyl hydrolase family 1 LI89_RS14810 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LI89_RS14810 PF00367 phosphotransferase system, EIIB LI89_RS14810 PF02378 Phosphotransferase system, EIIC LI89_RS14815 PF00874 PRD domain LI89_RS14815 PF03123 CAT RNA binding domain LI89_RS14825 PF01292 Prokaryotic cytochrome b561 LI89_RS14830 PF00155 Aminotransferase class I and II LI89_RS14840 PF07350 Protein of unknown function (DUF1479) LI89_RS14845 PF06580 Histidine kinase LI89_RS14845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS14845 PF07694 5TMR of 5TMR-LYT LI89_RS14850 PF00072 Response regulator receiver domain LI89_RS14850 PF04397 LytTr DNA-binding domain LI89_RS14855 PF07690 Major Facilitator Superfamily LI89_RS14860 PF02685 Glucokinase LI89_RS14870 PF03466 LysR substrate binding domain LI89_RS14870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS14875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LI89_RS14875 PF00205 Thiamine pyrophosphate enzyme, central domain LI89_RS14875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LI89_RS14880 PF00248 Aldo/keto reductase family LI89_RS14890 PF01566 Natural resistance-associated macrophage protein LI89_RS14895 PF07662 Na+ dependent nucleoside transporter C-terminus LI89_RS14895 PF07670 Nucleoside recognition LI89_RS14895 PF01773 Na+ dependent nucleoside transporter N-terminus LI89_RS14930 PF00749 tRNA synthetases class I (E and Q), catalytic domain LI89_RS14960 PF12843 Putative quorum-sensing-regulated virulence factor LI89_RS14965 PF12826 Helix-hairpin-helix motif LI89_RS14965 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LI89_RS14965 PF03120 NAD-dependent DNA ligase OB-fold domain LI89_RS14965 PF01653 NAD-dependent DNA ligase adenylation domain LI89_RS14965 PF00533 BRCA1 C Terminus (BRCT) domain LI89_RS14970 PF04354 ZipA, C-terminal FtsZ-binding domain LI89_RS14980 PF00291 Pyridoxal-phosphate dependent enzyme LI89_RS14985 PF00381 PTS HPr component phosphorylation site LI89_RS14990 PF05524 PEP-utilising enzyme, N-terminal LI89_RS14990 PF00391 PEP-utilising enzyme, mobile domain LI89_RS14990 PF02896 PEP-utilising enzyme, TIM barrel domain LI89_RS14995 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LI89_RS15000 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS15000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS15000 PF16527 Two-component sensor protein CpxA, periplasmic domain LI89_RS15000 PF00672 HAMP domain LI89_RS15005 PF00486 Transcriptional regulatory protein, C terminal LI89_RS15005 PF00072 Response regulator receiver domain LI89_RS15010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LI89_RS15015 PF00005 ABC transporter LI89_RS15015 PF02687 FtsX-like permease family LI89_RS15015 PF12704 MacB-like periplasmic core domain LI89_RS15020 PF00291 Pyridoxal-phosphate dependent enzyme LI89_RS15025 PF00005 ABC transporter LI89_RS15030 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS15035 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS15045 PF07690 Major Facilitator Superfamily LI89_RS15050 PF01380 SIS domain LI89_RS15050 PF01418 Helix-turn-helix domain, rpiR family LI89_RS15055 PF04074 YhcH/YjgK/YiaL LI89_RS15060 PF00480 ROK family LI89_RS15065 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LI89_RS15070 PF00701 Dihydrodipicolinate synthetase family LI89_RS15075 PF04261 Dyp-type peroxidase family LI89_RS15080 PF06572 Protein of unknown function (DUF1131) LI89_RS15085 PF04076 Bacterial OB fold (BOF) protein LI89_RS15095 PF00583 Acetyltransferase (GNAT) family LI89_RS15100 PF01218 Coproporphyrinogen III oxidase LI89_RS15105 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LI89_RS15120 PF01515 Phosphate acetyl/butaryl transferase LI89_RS15120 PF00390 Malic enzyme, N-terminal domain LI89_RS15120 PF03949 Malic enzyme, NAD binding domain LI89_RS15125 PF00293 NUDIX domain LI89_RS15130 PF03264 NapC/NirT cytochrome c family, N-terminal region LI89_RS15135 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LI89_RS15140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS15140 PF00384 Molybdopterin oxidoreductase LI89_RS15140 PF01568 Molydopterin dinucleotide binding domain LI89_RS15140 PF10518 TAT (twin-arginine translocation) pathway signal sequence LI89_RS15145 PF03927 NapD protein LI89_RS15155 PF00196 Bacterial regulatory proteins, luxR family LI89_RS15155 PF00072 Response regulator receiver domain LI89_RS15165 PF00873 AcrB/AcrD/AcrF family LI89_RS15345 PF03960 ArsC family LI89_RS15350 PF07687 Peptidase dimerisation domain LI89_RS15350 PF01546 Peptidase family M20/M25/M40 LI89_RS15355 PF02557 D-alanyl-D-alanine carboxypeptidase LI89_RS15360 PF13980 Uncharacterised protein family (UPF0370) LI89_RS15365 PF02230 Phospholipase/Carboxylesterase LI89_RS15370 PF17176 tRNA-binding domain LI89_RS15370 PF05127 Helicase LI89_RS15370 PF13718 GNAT acetyltransferase 2 LI89_RS15375 PF04284 Protein of unknown function (DUF441) LI89_RS15380 PF04228 Putative neutral zinc metallopeptidase LI89_RS15385 PF01259 SAICAR synthetase LI89_RS15390 PF06804 NlpB/DapX lipoprotein LI89_RS15395 PF00701 Dihydrodipicolinate synthetase family LI89_RS15400 PF01842 ACT domain LI89_RS15405 PF00578 AhpC/TSA family LI89_RS15410 PF01594 AI-2E family transporter LI89_RS15415 PF07720 Tetratricopeptide repeat LI89_RS15415 PF01435 Peptidase family M48 LI89_RS15420 PF03960 ArsC family LI89_RS15425 PF00308 Bacterial dnaA protein LI89_RS15430 PF00860 Permease family LI89_RS15440 PF00586 AIR synthase related protein, N-terminal domain LI89_RS15440 PF02769 AIR synthase related protein, C-terminal domain LI89_RS15445 PF00551 Formyl transferase LI89_RS15450 PF13302 Acetyltransferase (GNAT) domain LI89_RS15465 PF00005 ABC transporter LI89_RS15470 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS15475 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS15480 PF02503 Polyphosphate kinase middle domain LI89_RS15480 PF13090 Polyphosphate kinase C-terminal domain 2 LI89_RS15480 PF17941 Polyphosphate kinase C-terminal domain 1 LI89_RS15480 PF13089 Polyphosphate kinase N-terminal domain LI89_RS15485 PF02541 Ppx/GppA phosphatase family LI89_RS15495 PF03448 MgtE intracellular N domain LI89_RS15495 PF00571 CBS domain LI89_RS15495 PF01769 Divalent cation transporter LI89_RS15500 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS15500 PF13426 PAS domain LI89_RS15500 PF05231 MASE1 LI89_RS15500 PF08447 PAS fold LI89_RS15500 PF08448 PAS fold LI89_RS15500 PF00563 EAL domain LI89_RS15505 PF00012 Hsp70 protein LI89_RS15510 PF13533 Biotin-lipoyl like LI89_RS15515 PF00873 AcrB/AcrD/AcrF family LI89_RS15520 PF00873 AcrB/AcrD/AcrF family LI89_RS15530 PF07690 Major Facilitator Superfamily LI89_RS15535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS15535 PF00672 HAMP domain LI89_RS15535 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS15540 PF00072 Response regulator receiver domain LI89_RS15540 PF00486 Transcriptional regulatory protein, C terminal LI89_RS15545 PF07411 Domain of unknown function (DUF1508) LI89_RS15560 PF16325 Peptidase family U32 C-terminal domain LI89_RS15560 PF01136 Peptidase family U32 LI89_RS15565 PF00781 Diacylglycerol kinase catalytic domain LI89_RS15570 PF03608 PTS system enzyme II sorbitol-specific factor LI89_RS15575 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LI89_RS15575 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LI89_RS15580 PF03829 PTS system glucitol/sorbitol-specific IIA component LI89_RS15585 PF00106 short chain dehydrogenase LI89_RS15590 PF06923 Glucitol operon activator protein (GutM) LI89_RS15595 PF00455 DeoR C terminal sensor domain LI89_RS15595 PF08220 DeoR-like helix-turn-helix domain LI89_RS15600 PF00571 CBS domain LI89_RS15600 PF01380 SIS domain LI89_RS15615 PF08543 Phosphomethylpyrimidine kinase LI89_RS15630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LI89_RS15630 PF00034 Cytochrome c LI89_RS15635 PF05199 GMC oxidoreductase LI89_RS15635 PF00732 GMC oxidoreductase LI89_RS15650 PF00117 Glutamine amidotransferase class-I LI89_RS15650 PF02540 NAD synthase LI89_RS15650 PF00958 GMP synthase C terminal domain LI89_RS15655 PF00571 CBS domain LI89_RS15655 PF00478 IMP dehydrogenase / GMP reductase domain LI89_RS15660 PF13742 OB-fold nucleic acid binding domain LI89_RS15660 PF02601 Exonuclease VII, large subunit LI89_RS15665 PF07191 zinc-ribbons LI89_RS15675 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LI89_RS15675 PF01926 50S ribosome-binding GTPase LI89_RS15685 PF13360 PQQ-like domain LI89_RS15690 PF09976 Tetratricopeptide repeat-like domain LI89_RS15695 PF13393 Histidyl-tRNA synthetase LI89_RS15695 PF03129 Anticodon binding domain LI89_RS15700 PF04551 GcpE protein LI89_RS15705 PF13464 Domain of unknown function (DUF4115) LI89_RS15715 PF04055 Radical SAM superfamily LI89_RS15720 PF00334 Nucleoside diphosphate kinase LI89_RS15730 PF06832 Penicillin-Binding Protein C-terminus Family LI89_RS15730 PF00912 Transglycosylase LI89_RS15730 PF00905 Penicillin binding protein transpeptidase domain LI89_RS15735 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LI89_RS15735 PF00207 Alpha-2-macroglobulin family LI89_RS15735 PF07703 Alpha-2-macroglobulin bait region domain LI89_RS15735 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LI89_RS15735 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LI89_RS15735 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LI89_RS15735 PF07678 A-macroglobulin TED domain LI89_RS15735 PF17962 Bacterial macroglobulin domain 6 LI89_RS15735 PF01835 MG2 domain LI89_RS15740 PF16168 Adhesin of bacterial autotransporter system, probable stalk LI89_RS15740 PF03212 Pertactin LI89_RS15740 PF03797 Autotransporter beta-domain LI89_RS15745 PF03212 Pertactin LI89_RS15745 PF03797 Autotransporter beta-domain LI89_RS15745 PF16168 Adhesin of bacterial autotransporter system, probable stalk LI89_RS15750 PF14581 SseB protein C-terminal domain LI89_RS15750 PF07179 SseB protein N-terminal domain LI89_RS15755 PF00883 Cytosol aminopeptidase family, catalytic domain LI89_RS15755 PF12404 Peptidase LI89_RS15760 PF04384 Iron-sulphur cluster assembly LI89_RS15765 PF00111 2Fe-2S iron-sulfur cluster binding domain LI89_RS15770 PF00012 Hsp70 protein LI89_RS15775 PF07743 HSCB C-terminal oligomerisation domain LI89_RS15775 PF00226 DnaJ domain LI89_RS15780 PF01521 Iron-sulphur cluster biosynthesis LI89_RS15785 PF01592 NifU-like N terminal domain LI89_RS15790 PF00266 Aminotransferase class-V LI89_RS15795 PF02082 Transcriptional regulator LI89_RS15800 PF00588 SpoU rRNA Methylase family LI89_RS15805 PF00459 Inositol monophosphatase family LI89_RS15810 PF03824 High-affinity nickel-transport protein LI89_RS15815 PF06226 Protein of unknown function (DUF1007) LI89_RS15820 PF00874 PRD domain LI89_RS15825 PF12832 MFS_1 like family LI89_RS15830 PF00464 Serine hydroxymethyltransferase LI89_RS15835 PF00175 Oxidoreductase NAD-binding domain LI89_RS15835 PF00970 Oxidoreductase FAD-binding domain LI89_RS15835 PF00042 Globin LI89_RS15840 PF14503 YhfZ C-terminal domain LI89_RS15840 PF14502 Helix-turn-helix domain LI89_RS15850 PF01168 Alanine racemase, N-terminal domain LI89_RS15855 PF02126 Phosphotriesterase family LI89_RS15860 PF10941 Protein of unknown function DUF2620 LI89_RS15865 PF10797 Protein of unknown function LI89_RS15870 PF00543 Nitrogen regulatory protein P-II LI89_RS15875 PF00795 Carbon-nitrogen hydrolase LI89_RS15875 PF02540 NAD synthase LI89_RS15880 PF00072 Response regulator receiver domain LI89_RS15880 PF00158 Sigma-54 interaction domain LI89_RS15885 PF13942 YfhG lipoprotein LI89_RS15890 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS15890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS15900 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LI89_RS15900 PF02769 AIR synthase related protein, C-terminal domain LI89_RS15900 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LI89_RS15905 PF01464 Transglycosylase SLT domain LI89_RS15905 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS15910 PF14437 MafB19-like deaminase LI89_RS15925 PF01380 SIS domain LI89_RS15930 PF01418 Helix-turn-helix domain, rpiR family LI89_RS15930 PF01380 SIS domain LI89_RS15935 PF12838 4Fe-4S dicluster domain LI89_RS15940 PF02447 GntP family permease LI89_RS15950 PF01648 4'-phosphopantetheinyl transferase superfamily LI89_RS15955 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LI89_RS15960 PF02565 Recombination protein O C terminal LI89_RS15960 PF11967 Recombination protein O N terminal LI89_RS15965 PF07650 KH domain LI89_RS15965 PF01926 50S ribosome-binding GTPase LI89_RS15970 PF14622 Ribonuclease-III-like LI89_RS15970 PF00035 Double-stranded RNA binding motif LI89_RS15975 PF10502 Signal peptidase, peptidase S26 LI89_RS15980 PF00009 Elongation factor Tu GTP binding domain LI89_RS15980 PF06421 GTP-binding protein LepA C-terminus LI89_RS15980 PF00679 Elongation factor G C-terminus LI89_RS15980 PF03144 Elongation factor Tu domain 2 LI89_RS15995 PF17188 MucB/RseB C-terminal domain LI89_RS15995 PF03888 MucB/RseB N-terminal domain LI89_RS16000 PF03872 Anti sigma-E protein RseA, N-terminal domain LI89_RS16000 PF03873 Anti sigma-E protein RseA, C-terminal domain LI89_RS16005 PF04542 Sigma-70 region 2 LI89_RS16005 PF08281 Sigma-70, region 4 LI89_RS16010 PF00890 FAD binding domain LI89_RS16010 PF02910 Fumarate reductase flavoprotein C-term LI89_RS16015 PF05175 Methyltransferase small domain LI89_RS16020 PF00270 DEAD/DEAH box helicase LI89_RS16020 PF00271 Helicase conserved C-terminal domain LI89_RS16025 PF12796 Ankyrin repeats (3 copies) LI89_RS16035 PF01228 Glycine radical LI89_RS16040 PF03167 Uracil DNA glycosylase superfamily LI89_RS16045 PF01025 GrpE LI89_RS16050 PF01513 ATP-NAD kinase LI89_RS16055 PF02463 RecF/RecN/SMC N terminal domain LI89_RS16060 PF04355 SmpA / OmlA family LI89_RS16065 PF03658 RnfH family Ubiquitin LI89_RS16070 PF03364 Polyketide cyclase / dehydrase and lipid transport LI89_RS16075 PF01668 SmpB protein LI89_RS16085 PF00589 Phage integrase family LI89_RS16085 PF13356 Arm DNA-binding domain LI89_RS16150 PF00665 Integrase core domain LI89_RS16150 PF13936 Helix-turn-helix domain LI89_RS16160 PF12706 Beta-lactamase superfamily domain LI89_RS16180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LI89_RS16190 PF00106 short chain dehydrogenase LI89_RS16200 PF00107 Zinc-binding dehydrogenase LI89_RS16200 PF08240 Alcohol dehydrogenase GroES-like domain LI89_RS16205 PF02371 Transposase IS116/IS110/IS902 family LI89_RS16205 PF01548 Transposase LI89_RS16225 PF00665 Integrase core domain LI89_RS16225 PF13936 Helix-turn-helix domain LI89_RS16245 PF07690 Major Facilitator Superfamily LI89_RS16270 PF01740 STAS domain LI89_RS16270 PF00916 Sulfate permease family LI89_RS16275 PF04794 YdjC-like protein LI89_RS16280 PF12833 Helix-turn-helix domain LI89_RS16280 PF07883 Cupin domain LI89_RS16285 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LI89_RS16290 PF00232 Glycosyl hydrolase family 1 LI89_RS16295 PF02378 Phosphotransferase system, EIIC LI89_RS16300 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LI89_RS16305 PF07995 Glucose / Sorbosone dehydrogenase LI89_RS16310 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LI89_RS16315 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LI89_RS16320 PF07885 Ion channel LI89_RS16320 PF02254 TrkA-N domain LI89_RS16325 PF06411 HdeA/HdeB family LI89_RS16330 PF03824 High-affinity nickel-transport protein LI89_RS16335 PF03253 Urea transporter LI89_RS16340 PF01774 UreD urease accessory protein LI89_RS16345 PF02492 CobW/HypB/UreG, nucleotide-binding domain LI89_RS16350 PF01730 UreF LI89_RS16355 PF02814 UreE urease accessory protein, N-terminal domain LI89_RS16355 PF05194 UreE urease accessory protein, C-terminal domain LI89_RS16360 PF00449 Urease alpha-subunit, N-terminal domain LI89_RS16360 PF01979 Amidohydrolase family LI89_RS16365 PF00699 Urease beta subunit LI89_RS16370 PF00547 Urease, gamma subunit LI89_RS16380 PF00005 ABC transporter LI89_RS16385 PF00005 ABC transporter LI89_RS16390 PF12911 N-terminal TM domain of oligopeptide transport permease C LI89_RS16390 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS16395 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS16400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LI89_RS16420 PF01965 DJ-1/PfpI family LI89_RS16425 PF00313 'Cold-shock' DNA-binding domain LI89_RS16435 PF06711 Protein of unknown function (DUF1198) LI89_RS16440 PF09400 Protein of unknown function (DUF2002) LI89_RS16445 PF07690 Major Facilitator Superfamily LI89_RS16450 PF12833 Helix-turn-helix domain LI89_RS16460 PF06392 Acid shock protein repeat LI89_RS16465 PF05957 Bacterial protein of unknown function (DUF883) LI89_RS16470 PF00392 Bacterial regulatory proteins, gntR family LI89_RS16470 PF00155 Aminotransferase class I and II LI89_RS16475 PF02627 Carboxymuconolactone decarboxylase family LI89_RS16480 PF00462 Glutaredoxin LI89_RS16485 PF07972 NrdI Flavodoxin like LI89_RS16490 PF08343 Ribonucleotide reductase N-terminal LI89_RS16490 PF00317 Ribonucleotide reductase, all-alpha domain LI89_RS16490 PF02867 Ribonucleotide reductase, barrel domain LI89_RS16495 PF00268 Ribonucleotide reductase, small chain LI89_RS16500 PF00571 CBS domain LI89_RS16500 PF00005 ABC transporter LI89_RS16505 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS16510 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LI89_RS16520 PF00929 Exonuclease LI89_RS16525 PF00075 RNase H LI89_RS16530 PF08241 Methyltransferase domain LI89_RS16535 PF00753 Metallo-beta-lactamase superfamily LI89_RS16535 PF16123 Hydroxyacylglutathione hydrolase C-terminus LI89_RS16540 PF01476 LysM domain LI89_RS16540 PF01464 Transglycosylase SLT domain LI89_RS16545 PF03372 Endonuclease/Exonuclease/phosphatase family LI89_RS16550 PF07690 Major Facilitator Superfamily LI89_RS16555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS16555 PF03466 LysR substrate binding domain LI89_RS16560 PF00248 Aldo/keto reductase family LI89_RS16565 PF00109 Beta-ketoacyl synthase, N-terminal domain LI89_RS16565 PF02801 Beta-ketoacyl synthase, C-terminal domain LI89_RS16580 PF00109 Beta-ketoacyl synthase, N-terminal domain LI89_RS16580 PF02801 Beta-ketoacyl synthase, C-terminal domain LI89_RS16605 PF00535 Glycosyl transferase family 2 LI89_RS16610 PF07977 FabA-like domain LI89_RS16615 PF00501 AMP-binding enzyme LI89_RS16615 PF13193 AMP-binding enzyme C-terminal domain LI89_RS16625 PF00550 Phosphopantetheine attachment site LI89_RS16685 PF00005 ABC transporter LI89_RS16685 PF09383 NIL domain LI89_RS16690 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS16695 PF03180 NLPA lipoprotein LI89_RS16700 PF16358 RcsF lipoprotein LI89_RS16705 PF01980 tRNA-methyltransferase O LI89_RS16705 PF18389 TrmO C-terminal domain LI89_RS16710 PF04073 Aminoacyl-tRNA editing domain LI89_RS16710 PF03129 Anticodon binding domain LI89_RS16710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LI89_RS16715 PF04170 NlpE N-terminal domain LI89_RS16715 PF17185 NlpE C-terminal OB domain LI89_RS16720 PF00472 RF-1 domain LI89_RS16725 PF07152 YaeQ protein LI89_RS16730 PF06786 Uncharacterised protein family (UPF0253) LI89_RS16735 PF07073 Modulator of Rho-dependent transcription termination (ROF) LI89_RS16740 PF00034 Cytochrome c LI89_RS16745 PF01171 PP-loop family LI89_RS16745 PF09179 TilS substrate binding domain LI89_RS16745 PF11734 TilS substrate C-terminal domain LI89_RS16750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LI89_RS16755 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LI89_RS16755 PF01276 Orn/Lys/Arg decarboxylase, major domain LI89_RS16755 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LI89_RS16760 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LI89_RS16765 PF14579 Helix-hairpin-helix motif LI89_RS16765 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LI89_RS16765 PF01336 OB-fold nucleic acid binding domain LI89_RS16765 PF07733 Bacterial DNA polymerase III alpha NTPase domain LI89_RS16765 PF02811 PHP domain LI89_RS16770 PF01351 Ribonuclease HII LI89_RS16775 PF02684 Lipid-A-disaccharide synthetase LI89_RS16780 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LI89_RS16780 PF00132 Bacterial transferase hexapeptide (six repeats) LI89_RS16785 PF07977 FabA-like domain LI89_RS16790 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LI89_RS16790 PF00132 Bacterial transferase hexapeptide (six repeats) LI89_RS16795 PF03938 Outer membrane protein (OmpH-like) LI89_RS16800 PF07244 Surface antigen variable number repeat LI89_RS16800 PF01103 Surface antigen LI89_RS16805 PF17820 PDZ domain LI89_RS16805 PF02163 Peptidase family M50 LI89_RS16815 PF01255 Putative undecaprenyl diphosphate synthase LI89_RS16820 PF13288 DXP reductoisomerase C-terminal domain LI89_RS16820 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LI89_RS16820 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LI89_RS16825 PF01765 Ribosome recycling factor LI89_RS16830 PF00696 Amino acid kinase family LI89_RS16835 PF00889 Elongation factor TS LI89_RS16840 PF00318 Ribosomal protein S2 LI89_RS16850 PF00557 Metallopeptidase family M24 LI89_RS16855 PF01909 Nucleotidyltransferase domain LI89_RS16855 PF01966 HD domain LI89_RS16855 PF01842 ACT domain LI89_RS16855 PF08335 GlnD PII-uridylyltransferase LI89_RS16860 PF00132 Bacterial transferase hexapeptide (six repeats) LI89_RS16860 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LI89_RS16860 PF14602 Hexapeptide repeat of succinyl-transferase LI89_RS16865 PF11944 Protein of unknown function (DUF3461) LI89_RS16870 PF00258 Flavodoxin LI89_RS16875 PF00849 RNA pseudouridylate synthase LI89_RS16880 PF04287 tRNA pseudouridine synthase C LI89_RS16885 PF07348 Syd protein (SUKH-2) LI89_RS16890 PF14489 QueF-like protein LI89_RS16890 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LI89_RS16895 PF11892 Domain of unknown function (DUF3412) LI89_RS16895 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LI89_RS16895 PF03641 Possible lysine decarboxylase LI89_RS16900 PF01367 5'-3' exonuclease, C-terminal SAM fold LI89_RS16900 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LI89_RS16905 PF18125 RlmM ferredoxin-like domain LI89_RS16905 PF01728 FtsJ-like methyltransferase LI89_RS16910 PF04241 Protein of unknown function (DUF423) LI89_RS16915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS16915 PF03466 LysR substrate binding domain LI89_RS16920 PF06004 Bacterial protein of unknown function (DUF903) LI89_RS16925 PF00266 Aminotransferase class-V LI89_RS16930 PF02657 Fe-S metabolism associated domain LI89_RS16935 PF00899 ThiF family LI89_RS16940 PF03562 MltA specific insert domain LI89_RS16940 PF06725 3D domain LI89_RS16960 PF01520 N-acetylmuramoyl-L-alanine amidase LI89_RS16960 PF11741 AMIN domain LI89_RS16965 PF00583 Acetyltransferase (GNAT) family LI89_RS16965 PF00696 Amino acid kinase family LI89_RS16970 PF13538 UvrD-like helicase C-terminal domain LI89_RS16975 PF00580 UvrD/REP helicase N-terminal domain LI89_RS16975 PF12705 PD-(D/E)XK nuclease superfamily LI89_RS16975 PF13361 UvrD-like helicase C-terminal domain LI89_RS16980 PF16187 Middle or third domain of peptidase_M16 LI89_RS16980 PF00675 Insulinase (Peptidase family M16) LI89_RS16980 PF05193 Peptidase M16 inactive domain LI89_RS16985 PF17946 RecC C-terminal domain LI89_RS17005 PF07963 Prokaryotic N-terminal methylation motif LI89_RS17020 PF05524 PEP-utilising enzyme, N-terminal LI89_RS17020 PF00391 PEP-utilising enzyme, mobile domain LI89_RS17020 PF02896 PEP-utilising enzyme, TIM barrel domain LI89_RS17020 PF01590 GAF domain LI89_RS17025 PF00293 NUDIX domain LI89_RS17035 PF02976 DNA mismatch repair enzyme MutH LI89_RS17040 PF03741 Integral membrane protein TerC family LI89_RS17045 PF00248 Aldo/keto reductase family LI89_RS17050 PF07690 Major Facilitator Superfamily LI89_RS17055 PF13193 AMP-binding enzyme C-terminal domain LI89_RS17055 PF00501 AMP-binding enzyme LI89_RS17055 PF01553 Acyltransferase LI89_RS17060 PF01568 Molydopterin dinucleotide binding domain LI89_RS17060 PF00384 Molybdopterin oxidoreductase LI89_RS17065 PF00356 Bacterial regulatory proteins, lacI family LI89_RS17070 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LI89_RS17070 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LI89_RS17075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS17075 PF03466 LysR substrate binding domain LI89_RS17080 PF07690 Major Facilitator Superfamily LI89_RS17085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS17085 PF03466 LysR substrate binding domain LI89_RS17100 PF02203 Tar ligand binding domain homologue LI89_RS17100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LI89_RS17100 PF00672 HAMP domain LI89_RS17120 PF01478 Type IV leader peptidase family LI89_RS17120 PF06750 Bacterial Peptidase A24 N-terminal domain LI89_RS17145 PF02501 Type II secretion system (T2SS), protein I LI89_RS17145 PF07963 Prokaryotic N-terminal methylation motif LI89_RS17150 PF07963 Prokaryotic N-terminal methylation motif LI89_RS17150 PF08334 Type II secretion system (T2SS), protein G LI89_RS17155 PF00482 Type II secretion system (T2SS), protein F LI89_RS17160 PF00437 Type II/IV secretion system protein LI89_RS17165 PF00263 Bacterial type II and III secretion system protein LI89_RS17165 PF03958 Bacterial type II/III secretion system short domain LI89_RS17180 PF00484 Carbonic anhydrase LI89_RS17185 PF01638 HxlR-like helix-turn-helix LI89_RS17200 PF01556 DnaJ C terminal domain LI89_RS17200 PF00226 DnaJ domain LI89_RS17210 PF07690 Major Facilitator Superfamily LI89_RS17215 PF13802 Galactose mutarotase-like LI89_RS17215 PF16338 Domain of unknown function (DUF4968) LI89_RS17215 PF01055 Glycosyl hydrolases family 31 LI89_RS17215 PF17137 Domain of unknown function (DUF5110) LI89_RS17225 PF01037 Lrp/AsnC ligand binding domain LI89_RS17230 PF08448 PAS fold LI89_RS17230 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS17235 PF13474 SnoaL-like domain LI89_RS17240 PF03960 ArsC family LI89_RS17245 PF02040 Arsenical pump membrane protein LI89_RS17250 PF01022 Bacterial regulatory protein, arsR family LI89_RS17380 PF00589 Phage integrase family LI89_RS17380 PF14659 Phage integrase, N-terminal SAM-like domain LI89_RS17380 PF13356 Arm DNA-binding domain LI89_RS17390 PF01336 OB-fold nucleic acid binding domain LI89_RS17390 PF00152 tRNA synthetases class II (D, K and N) LI89_RS17395 PF00472 RF-1 domain LI89_RS17395 PF03462 PCRF domain LI89_RS17400 PF02272 DHHA1 domain LI89_RS17400 PF01368 DHH family LI89_RS17400 PF17768 RecJ OB domain LI89_RS17405 PF10411 Disulfide bond isomerase protein N-terminus LI89_RS17405 PF13098 Thioredoxin-like domain LI89_RS17410 PF00589 Phage integrase family LI89_RS17410 PF02899 Phage integrase, N-terminal SAM-like domain LI89_RS17415 PF00258 Flavodoxin LI89_RS17420 PF06123 Inner membrane protein CreD LI89_RS17425 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS17425 PF00672 HAMP domain LI89_RS17425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS17430 PF00486 Transcriptional regulatory protein, C terminal LI89_RS17430 PF00072 Response regulator receiver domain LI89_RS17435 PF07254 Membrane-bound toxin component of toxin-antitoxin system LI89_RS17440 PF03937 Flavinator of succinate dehydrogenase LI89_RS17445 PF01571 Aminomethyltransferase folate-binding domain LI89_RS17450 PF03006 Haemolysin-III related LI89_RS17470 PF02347 Glycine cleavage system P-protein LI89_RS17475 PF01597 Glycine cleavage H-protein LI89_RS17480 PF01571 Aminomethyltransferase folate-binding domain LI89_RS17480 PF08669 Glycine cleavage T-protein C-terminal barrel domain LI89_RS17485 PF01494 FAD binding domain LI89_RS17490 PF01494 FAD binding domain LI89_RS17495 PF00557 Metallopeptidase family M24 LI89_RS17495 PF05195 Aminopeptidase P, N-terminal domain LI89_RS17500 PF03695 Uncharacterised protein family (UPF0149) LI89_RS17505 PF05164 Cell division protein ZapA LI89_RS17515 PF01812 5-formyltetrahydrofolate cyclo-ligase family LI89_RS17520 PF01842 ACT domain LI89_RS17520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LI89_RS17520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LI89_RS17525 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LI89_RS17530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS17530 PF03466 LysR substrate binding domain LI89_RS17535 PF04402 Protein of unknown function (DUF541) LI89_RS17540 PF01810 LysE type translocator LI89_RS17545 PF00924 Mechanosensitive ion channel LI89_RS17545 PF05552 Conserved TM helix LI89_RS17550 PF01116 Fructose-bisphosphate aldolase class-II LI89_RS17555 PF00162 Phosphoglycerate kinase LI89_RS17560 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LI89_RS17560 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LI89_RS17565 PF02779 Transketolase, pyrimidine binding domain LI89_RS17565 PF02780 Transketolase, C-terminal domain LI89_RS17565 PF00456 Transketolase, thiamine diphosphate binding domain LI89_RS17570 PF01435 Peptidase family M48 LI89_RS17575 PF00355 Rieske [2Fe-2S] domain LI89_RS17580 PF17810 Arginine decarboxylase helical bundle domain LI89_RS17580 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LI89_RS17580 PF17944 Arginine decarboxylase C-terminal helical extension LI89_RS17585 PF02773 S-adenosylmethionine synthetase, C-terminal domain LI89_RS17585 PF02772 S-adenosylmethionine synthetase, central domain LI89_RS17585 PF00438 S-adenosylmethionine synthetase, N-terminal domain LI89_RS17595 PF04143 Sulphur transport LI89_RS17605 PF17283 SprT-like zinc ribbon domain LI89_RS17605 PF10263 SprT-like family LI89_RS17610 PF04231 Endonuclease I LI89_RS17615 PF04452 RNA methyltransferase LI89_RS17620 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LI89_RS17620 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LI89_RS17625 PF02622 Uncharacterized ACR, COG1678 LI89_RS17630 PF03652 Holliday junction resolvase LI89_RS17635 PF00795 Carbon-nitrogen hydrolase LI89_RS17640 PF04371 Porphyromonas-type peptidyl-arginine deiminase LI89_RS17645 PF00437 Type II/IV secretion system protein LI89_RS17650 PF01168 Alanine racemase, N-terminal domain LI89_RS17655 PF03807 NADP oxidoreductase coenzyme F420-dependent LI89_RS17655 PF14748 Pyrroline-5-carboxylate reductase dimerisation LI89_RS17660 PF02325 YGGT family LI89_RS17665 PF02594 Uncharacterised ACR, YggU family COG1872 LI89_RS17670 PF01725 Ham1 family LI89_RS17675 PF04055 Radical SAM superfamily LI89_RS17675 PF06969 HemN C-terminal domain LI89_RS17680 PF11101 Protein of unknown function (DUF2884) LI89_RS17685 PF04960 Glutaminase LI89_RS17690 PF04320 Protein with unknown function (DUF469) LI89_RS17695 PF02390 Putative methyltransferase LI89_RS17700 PF10576 Iron-sulfur binding domain of endonuclease III LI89_RS17700 PF00633 Helix-hairpin-helix motif LI89_RS17700 PF00730 HhH-GPD superfamily base excision DNA repair protein LI89_RS17700 PF14815 NUDIX domain LI89_RS17705 PF04362 Bacterial Fe(2+) trafficking LI89_RS17710 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LI89_RS17710 PF01464 Transglycosylase SLT domain LI89_RS17720 PF01276 Orn/Lys/Arg decarboxylase, major domain LI89_RS17720 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LI89_RS17720 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LI89_RS17735 PF00486 Transcriptional regulatory protein, C terminal LI89_RS17735 PF00072 Response regulator receiver domain LI89_RS17745 PF00672 HAMP domain LI89_RS17745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS17745 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS17750 PF00196 Bacterial regulatory proteins, luxR family LI89_RS17770 PF13520 Amino acid permease LI89_RS17775 PF01276 Orn/Lys/Arg decarboxylase, major domain LI89_RS17775 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LI89_RS17775 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LI89_RS17785 PF04632 Fusaric acid resistance protein family LI89_RS17790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LI89_RS17790 PF00529 HlyD membrane-fusion protein of T1SS LI89_RS17810 PF00557 Metallopeptidase family M24 LI89_RS17815 PF00005 ABC transporter LI89_RS17820 PF01032 FecCD transport family LI89_RS17825 PF01032 FecCD transport family LI89_RS17830 PF01497 Periplasmic binding protein LI89_RS17845 PF00892 EamA-like transporter family LI89_RS17850 PF00155 Aminotransferase class I and II LI89_RS17850 PF00392 Bacterial regulatory proteins, gntR family LI89_RS17860 PF00083 Sugar (and other) transporter LI89_RS17860 PF07690 Major Facilitator Superfamily LI89_RS17865 PF00356 Bacterial regulatory proteins, lacI family LI89_RS17870 PF01156 Inosine-uridine preferring nucleoside hydrolase LI89_RS17875 PF02690 Na+/Pi-cotransporter LI89_RS17890 PF08946 Osmosensory transporter coiled coil LI89_RS17890 PF00083 Sugar (and other) transporter LI89_RS17900 PF00072 Response regulator receiver domain LI89_RS17900 PF00196 Bacterial regulatory proteins, luxR family LI89_RS17905 PF00873 AcrB/AcrD/AcrF family LI89_RS17910 PF13533 Biotin-lipoyl like LI89_RS17915 PF08448 PAS fold LI89_RS17915 PF08447 PAS fold LI89_RS17915 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS17915 PF00563 EAL domain LI89_RS17930 PF02110 Hydroxyethylthiazole kinase family LI89_RS17935 PF00708 Acylphosphatase LI89_RS17935 PF17788 HypF Kae1-like domain LI89_RS17935 PF01300 Telomere recombination LI89_RS17935 PF07503 HypF finger LI89_RS17940 PF02769 AIR synthase related protein, C-terminal domain LI89_RS17940 PF00586 AIR synthase related protein, N-terminal domain LI89_RS17945 PF01924 Hydrogenase formation hypA family LI89_RS17950 PF01455 HupF/HypC family LI89_RS17955 PF02492 CobW/HypB/UreG, nucleotide-binding domain LI89_RS17960 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LI89_RS17965 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE LI89_RS17970 PF01750 Hydrogenase maturation protease LI89_RS17975 PF00374 Nickel-dependent hydrogenase LI89_RS17980 PF03916 Polysulphide reductase, NrfD LI89_RS17985 PF13247 4Fe-4S dicluster domain LI89_RS17990 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LI89_RS17990 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LI89_RS17995 PF05433 Glycine zipper 2TM domain LI89_RS18000 PF00691 OmpA family LI89_RS18000 PF13677 Membrane MotB of proton-channel complex MotA/MotB LI89_RS18005 PF00771 FHIPEP family LI89_RS18015 PF02203 Tar ligand binding domain homologue LI89_RS18015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LI89_RS18015 PF00672 HAMP domain LI89_RS18020 PF01370 NAD dependent epimerase/dehydratase family LI89_RS18025 PF07690 Major Facilitator Superfamily LI89_RS18030 PF01497 Periplasmic binding protein LI89_RS18035 PF01032 FecCD transport family LI89_RS18040 PF01032 FecCD transport family LI89_RS18045 PF00005 ABC transporter LI89_RS18050 PF00756 Putative esterase LI89_RS18050 PF11806 Domain of unknown function (DUF3327) LI89_RS18055 PF00593 TonB dependent receptor LI89_RS18055 PF07715 TonB-dependent Receptor Plug Domain LI89_RS18075 PF00529 HlyD membrane-fusion protein of T1SS LI89_RS18075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LI89_RS18080 PF00873 AcrB/AcrD/AcrF family LI89_RS18085 PF13532 2OG-Fe(II) oxygenase superfamily LI89_RS18110 PF00263 Bacterial type II and III secretion system protein LI89_RS18110 PF13629 Pilus formation protein N terminal region LI89_RS18110 PF04972 BON domain LI89_RS18125 PF00437 Type II/IV secretion system protein LI89_RS18160 PF02472 Biopolymer transport protein ExbD/TolR LI89_RS18165 PF01618 MotA/TolQ/ExbB proton channel family LI89_RS18170 PF01053 Cys/Met metabolism PLP-dependent enzyme LI89_RS18175 PF09335 SNARE associated Golgi protein LI89_RS18180 PF06719 AraC-type transcriptional regulator N-terminus LI89_RS18180 PF12833 Helix-turn-helix domain LI89_RS18185 PF00465 Iron-containing alcohol dehydrogenase LI89_RS18190 PF00248 Aldo/keto reductase family LI89_RS18195 PF04055 Radical SAM superfamily LI89_RS18195 PF08497 Radical SAM N-terminal LI89_RS18195 PF11842 Domain of unknown function (DUF3362) LI89_RS18205 PF07732 Multicopper oxidase LI89_RS18205 PF07731 Multicopper oxidase LI89_RS18210 PF01553 Acyltransferase LI89_RS18215 PF00521 DNA gyrase/topoisomerase IV, subunit A LI89_RS18215 PF03989 DNA gyrase C-terminal domain, beta-propeller LI89_RS18220 PF02525 Flavodoxin-like fold LI89_RS18225 PF03992 Antibiotic biosynthesis monooxygenase LI89_RS18230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS18230 PF03466 LysR substrate binding domain LI89_RS18235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS18235 PF00204 DNA gyrase B LI89_RS18235 PF01751 Toprim domain LI89_RS18235 PF00986 DNA gyrase B subunit, carboxyl terminus LI89_RS18240 PF05728 Uncharacterised protein family (UPF0227) LI89_RS18245 PF00149 Calcineurin-like phosphoesterase LI89_RS18250 PF06853 Protein of unknown function (DUF1249) LI89_RS18255 PF00293 NUDIX domain LI89_RS18260 PF02321 Outer membrane efflux protein LI89_RS18265 PF06693 Protein of unknown function (DUF1190) LI89_RS18270 PF03738 Glutathionylspermidine synthase preATP-grasp LI89_RS18275 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LI89_RS18280 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LI89_RS18285 PF04380 Membrane fusogenic activity LI89_RS18290 PF13520 Amino acid permease LI89_RS18295 PF01467 Cytidylyltransferase-like LI89_RS18295 PF00294 pfkB family carbohydrate kinase LI89_RS18300 PF08335 GlnD PII-uridylyltransferase LI89_RS18300 PF03710 Glutamate-ammonia ligase adenylyltransferase LI89_RS18305 PF01928 CYTH domain LI89_RS18310 PF08239 Bacterial SH3 domain LI89_RS18315 PF12627 Probable RNA and SrmB- binding site of polymerase A LI89_RS18315 PF01743 Poly A polymerase head domain LI89_RS18315 PF01966 HD domain LI89_RS18320 PF02673 Bacitracin resistance protein BacA LI89_RS18325 PF02152 Dihydroneopterin aldolase LI89_RS18330 PF02660 Glycerol-3-phosphate acyltransferase LI89_RS18335 PF00814 Glycoprotease family LI89_RS18340 PF01165 Ribosomal protein S21 LI89_RS18345 PF08278 DNA primase DnaG DnaB-binding LI89_RS18345 PF08275 DNA primase catalytic core, N-terminal domain LI89_RS18345 PF10410 DnaB-helicase binding domain of primase LI89_RS18345 PF01807 CHC2 zinc finger LI89_RS18350 PF04546 Sigma-70, non-essential region LI89_RS18350 PF04545 Sigma-70, region 4 LI89_RS18350 PF03979 Sigma-70 factor, region 1.1 LI89_RS18350 PF00140 Sigma-70 factor, region 1.2 LI89_RS18350 PF04539 Sigma-70 region 3 LI89_RS18350 PF04542 Sigma-70 region 2 LI89_RS18365 PF06755 CbtA_toxin of type IV toxin-antitoxin system LI89_RS18370 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A LI89_RS18375 PF04002 RadC-like JAB domain LI89_RS18380 PF03230 Antirestriction protein LI89_RS18385 PF06006 Bacterial protein of unknown function (DUF905) LI89_RS18400 PF13280 WYL domain LI89_RS18400 PF08220 DeoR-like helix-turn-helix domain LI89_RS18405 PF06067 Domain of unknown function (DUF932) LI89_RS18410 PF01926 50S ribosome-binding GTPase LI89_RS18425 PF13180 PDZ domain LI89_RS18430 PF01435 Peptidase family M48 LI89_RS18440 PF02254 TrkA-N domain LI89_RS18440 PF00999 Sodium/hydrogen exchanger family LI89_RS18440 PF02080 TrkA-C domain LI89_RS18445 PF00085 Thioredoxin LI89_RS18475 PF17862 AAA+ lid domain LI89_RS18475 PF01434 Peptidase family M41 LI89_RS18475 PF00004 ATPase family associated with various cellular activities (AAA) LI89_RS18485 PF07724 AAA domain (Cdc48 subfamily) LI89_RS18485 PF00004 ATPase family associated with various cellular activities (AAA) LI89_RS18485 PF02861 Clp amino terminal domain, pathogenicity island component LI89_RS18485 PF17871 AAA lid domain LI89_RS18485 PF10431 C-terminal, D2-small domain, of ClpB protein LI89_RS18490 PF00011 Hsp20/alpha crystallin family LI89_RS18495 PF12728 Helix-turn-helix domain LI89_RS18515 PF13333 Integrase core domain LI89_RS18515 PF00665 Integrase core domain LI89_RS18515 PF13276 HTH-like domain LI89_RS18520 PF01527 Transposase LI89_RS18535 PF13148 Protein of unknown function (DUF3987) LI89_RS18550 PF02661 Fic/DOC family LI89_RS18560 PF07075 Protein of unknown function (DUF1343) LI89_RS18570 PF01915 Glycosyl hydrolase family 3 C-terminal domain LI89_RS18570 PF00933 Glycosyl hydrolase family 3 N terminal domain LI89_RS18575 PF01380 SIS domain LI89_RS18575 PF01418 Helix-turn-helix domain, rpiR family LI89_RS18580 PF13580 SIS domain LI89_RS18585 PF02378 Phosphotransferase system, EIIC LI89_RS18585 PF00367 phosphotransferase system, EIIB LI89_RS18590 PF04960 Glutaminase LI89_RS18595 PF13520 Amino acid permease LI89_RS18600 PF00282 Pyridoxal-dependent decarboxylase conserved domain LI89_RS18605 PF01638 HxlR-like helix-turn-helix LI89_RS18610 PF07690 Major Facilitator Superfamily LI89_RS18615 PF03729 Short repeat of unknown function (DUF308) LI89_RS18620 PF00892 EamA-like transporter family LI89_RS18625 PF07992 Pyridine nucleotide-disulphide oxidoreductase LI89_RS18625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LI89_RS18630 PF05175 Methyltransferase small domain LI89_RS18635 PF03797 Autotransporter beta-domain LI89_RS18640 PF01863 Protein of unknown function DUF45 LI89_RS18645 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LI89_RS18650 PF03741 Integral membrane protein TerC family LI89_RS18655 PF00375 Sodium:dicarboxylate symporter family LI89_RS18660 PF10688 Bacterial inner membrane protein LI89_RS18665 PF08666 SAF domain LI89_RS18665 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LI89_RS18670 PF08125 Mannitol dehydrogenase C-terminal domain LI89_RS18670 PF01232 Mannitol dehydrogenase Rossmann domain LI89_RS18675 PF02614 Glucuronate isomerase LI89_RS18680 PF07690 Major Facilitator Superfamily LI89_RS18685 PF07729 FCD domain LI89_RS18685 PF00392 Bacterial regulatory proteins, gntR family LI89_RS18695 PF09335 SNARE associated Golgi protein LI89_RS18700 PF13721 SecD export protein N-terminal TM region LI89_RS18710 PF05957 Bacterial protein of unknown function (DUF883) LI89_RS18715 PF07332 Putative Actinobacterial Holin-X, holin superfamily III LI89_RS18720 PF13997 YqjK-like protein LI89_RS18725 PF07681 DoxX LI89_RS18730 PF13409 Glutathione S-transferase, N-terminal domain LI89_RS18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS18735 PF03466 LysR substrate binding domain LI89_RS18740 PF17954 Quercetinase C-terminal cupin domain LI89_RS18740 PF02678 Pirin LI89_RS18745 PF00107 Zinc-binding dehydrogenase LI89_RS18745 PF08240 Alcohol dehydrogenase GroES-like domain LI89_RS18750 PF00248 Aldo/keto reductase family LI89_RS18755 PF03466 LysR substrate binding domain LI89_RS18755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS18760 PF01381 Helix-turn-helix LI89_RS18770 PF00145 C-5 cytosine-specific DNA methylase LI89_RS18780 PF00239 Resolvase, N terminal domain LI89_RS18780 PF02796 Helix-turn-helix domain of resolvase LI89_RS18815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LI89_RS18820 PF04348 LppC putative lipoprotein LI89_RS18825 PF02021 Uncharacterised protein family UPF0102 LI89_RS18830 PF13580 SIS domain LI89_RS18835 PF04972 BON domain LI89_RS18840 PF00912 Transglycosylase LI89_RS18850 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS18850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS18850 PF18415 Histidine kinase receptor ArcB trans-membrane domain LI89_RS18850 PF01627 Hpt domain LI89_RS18850 PF00072 Response regulator receiver domain LI89_RS18850 PF00989 PAS fold LI89_RS18855 PF04055 Radical SAM superfamily LI89_RS18855 PF16199 Radical_SAM C-terminal domain LI89_RS18860 PF00310 Glutamine amidotransferases class-II LI89_RS18860 PF01493 GXGXG motif LI89_RS18860 PF04898 Glutamate synthase central domain LI89_RS18860 PF01645 Conserved region in glutamate synthase LI89_RS18865 PF07992 Pyridine nucleotide-disulphide oxidoreductase LI89_RS18865 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LI89_RS18875 PF04386 Stringent starvation protein B LI89_RS18880 PF00043 Glutathione S-transferase, C-terminal domain LI89_RS18880 PF02798 Glutathione S-transferase, N-terminal domain LI89_RS18885 PF00380 Ribosomal protein S9/S16 LI89_RS18890 PF00572 Ribosomal protein L13 LI89_RS18895 PF03969 AFG1-like ATPase LI89_RS18900 PF06295 Protein of unknown function (DUF1043) LI89_RS18905 PF00595 PDZ domain LI89_RS18905 PF13180 PDZ domain LI89_RS18910 PF13180 PDZ domain LI89_RS18915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LI89_RS18920 PF01722 BolA-like protein LI89_RS18925 PF13466 STAS domain LI89_RS18930 PF05494 MlaC protein LI89_RS18935 PF02470 MlaD protein LI89_RS18940 PF02405 Permease MlaE LI89_RS18945 PF00005 ABC transporter LI89_RS18950 PF01699 Sodium/calcium exchanger protein LI89_RS18955 PF01380 SIS domain LI89_RS18955 PF00571 CBS domain LI89_RS18965 PF06835 Lipopolysaccharide-assembly, LptC-related LI89_RS18970 PF03968 OstA-like protein LI89_RS18975 PF00005 ABC transporter LI89_RS18975 PF12399 Branched-chain amino acid ATP-binding cassette transporter LI89_RS18980 PF04963 Sigma-54 factor, core binding domain LI89_RS18980 PF00309 Sigma-54 factor, Activator interacting domain (AID) LI89_RS18980 PF04552 Sigma-54, DNA binding domain LI89_RS18985 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LI89_RS18990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LI89_RS18995 PF03668 P-loop ATPase protein family LI89_RS19000 PF00381 PTS HPr component phosphorylation site LI89_RS19010 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LI89_RS19010 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LI89_RS19015 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LI89_RS19015 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LI89_RS19020 PF01042 Endoribonuclease L-PSP LI89_RS19025 PF14403 Circularly permuted ATP-grasp type 2 LI89_RS19030 PF04168 A predicted alpha-helical domain with a conserved ER motif. LI89_RS19030 PF14403 Circularly permuted ATP-grasp type 2 LI89_RS19045 PF11941 Domain of unknown function (DUF3459) LI89_RS19045 PF00128 Alpha amylase, catalytic domain LI89_RS19050 PF02378 Phosphotransferase system, EIIC LI89_RS19050 PF00367 phosphotransferase system, EIIB LI89_RS19055 PF00356 Bacterial regulatory proteins, lacI family LI89_RS19060 PF00689 Cation transporting ATPase, C-terminus LI89_RS19060 PF00690 Cation transporter/ATPase, N-terminus LI89_RS19065 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB LI89_RS19070 PF01381 Helix-turn-helix LI89_RS19075 PF08279 HTH domain LI89_RS19075 PF05043 Mga helix-turn-helix domain LI89_RS19075 PF00874 PRD domain LI89_RS19075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LI89_RS19080 PF10282 Lactonase, 7-bladed beta-propeller LI89_RS19085 PF07071 KDGP aldolase LI89_RS19090 PF03841 L-seryl-tRNA selenium transferase LI89_RS19095 PF01979 Amidohydrolase family LI89_RS19125 PF01272 Transcription elongation factor, GreA/GreB, C-term LI89_RS19125 PF14760 Rnk N-terminus LI89_RS19130 PF07361 Cytochrome b562 LI89_RS19135 PF01523 Putative modulator of DNA gyrase LI89_RS19140 PF04751 Protein of unknown function (DUF615) LI89_RS19145 PF01337 Barstar (barnase inhibitor) LI89_RS19155 PF00171 Aldehyde dehydrogenase family LI89_RS19160 PF04632 Fusaric acid resistance protein family LI89_RS19165 PF13533 Biotin-lipoyl like LI89_RS19170 PF07869 Protein of unknown function (DUF1656) LI89_RS19175 PF03466 LysR substrate binding domain LI89_RS19175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS19185 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain LI89_RS19185 PF18413 Neuraminidase-like domain LI89_RS19190 PF12256 Insecticide toxin TcdB middle/N-terminal region LI89_RS19190 PF12255 Insecticide toxin TcdB middle/C-terminal region LI89_RS19190 PF03534 Salmonella virulence plasmid 65kDa B protein LI89_RS19210 PF14431 YwqJ-like deaminase LI89_RS19210 PF18807 Tripartite Tc toxins repeat LI89_RS19215 PF01523 Putative modulator of DNA gyrase LI89_RS19220 PF00795 Carbon-nitrogen hydrolase LI89_RS19225 PF13116 Protein of unknown function LI89_RS19225 PF13502 AsmA-like C-terminal region LI89_RS19230 PF00575 S1 RNA binding domain LI89_RS19230 PF10150 Ribonuclease E/G family LI89_RS19235 PF02545 Maf-like protein LI89_RS19240 PF04093 rod shape-determining protein MreD LI89_RS19245 PF04085 rod shape-determining protein MreC LI89_RS19255 PF17157 Gammaproteobacterial periplasmic sensor domain LI89_RS19255 PF00563 EAL domain LI89_RS19255 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS19260 PF00107 Zinc-binding dehydrogenase LI89_RS19260 PF08240 Alcohol dehydrogenase GroES-like domain LI89_RS19265 PF00174 Oxidoreductase molybdopterin binding domain LI89_RS19270 PF01794 Ferric reductase like transmembrane component LI89_RS19275 PF01220 Dehydroquinase class II LI89_RS19280 PF00364 Biotin-requiring enzyme LI89_RS19285 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LI89_RS19285 PF02785 Biotin carboxylase C-terminal domain LI89_RS19285 PF00289 Biotin carboxylase, N-terminal domain LI89_RS19290 PF06196 Protein of unknown function (DUF997) LI89_RS19295 PF00474 Sodium:solute symporter family LI89_RS19305 PF01207 Dihydrouridine synthase (Dus) LI89_RS19310 PF02954 Bacterial regulatory protein, Fis family LI89_RS19325 PF03354 Phage Terminase LI89_RS19410 PF13356 Arm DNA-binding domain LI89_RS19410 PF14659 Phage integrase, N-terminal SAM-like domain LI89_RS19410 PF00589 Phage integrase family LI89_RS19415 PF00072 Response regulator receiver domain LI89_RS19415 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS19420 PF05433 Glycine zipper 2TM domain LI89_RS19425 PF00313 'Cold-shock' DNA-binding domain LI89_RS19430 PF00313 'Cold-shock' DNA-binding domain LI89_RS19435 PF00313 'Cold-shock' DNA-binding domain LI89_RS19440 PF00939 Sodium:sulfate symporter transmembrane region LI89_RS19445 PF03279 Bacterial lipid A biosynthesis acyltransferase LI89_RS19455 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS19460 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS19465 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS19470 PF00005 ABC transporter LI89_RS19480 PF03788 LrgA family LI89_RS19485 PF03466 LysR substrate binding domain LI89_RS19485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS19490 PF00999 Sodium/hydrogen exchanger family LI89_RS19495 PF00860 Permease family LI89_RS19505 PF00436 Single-strand binding protein family LI89_RS19510 PF17760 UvrA interaction domain LI89_RS19510 PF00005 ABC transporter LI89_RS19510 PF17755 UvrA DNA-binding domain LI89_RS19515 PF04237 YjbR LI89_RS19520 PF00155 Aminotransferase class I and II LI89_RS19525 PF00842 Alanine racemase, C-terminal domain LI89_RS19525 PF01168 Alanine racemase, N-terminal domain LI89_RS19530 PF03796 DnaB-like helicase C terminal domain LI89_RS19530 PF00772 DnaB-like helicase N terminal domain LI89_RS19535 PF08240 Alcohol dehydrogenase GroES-like domain LI89_RS19535 PF00107 Zinc-binding dehydrogenase LI89_RS19545 PF09583 Phage shock protein G (Phageshock_PspG) LI89_RS19550 PF01207 Dihydrouridine synthase (Dus) LI89_RS19555 PF01475 Ferric uptake regulator family LI89_RS19560 PF05532 CsbD-like LI89_RS19565 PF00717 Peptidase S24-like LI89_RS19565 PF01726 LexA DNA binding domain LI89_RS19570 PF01219 Prokaryotic diacylglycerol kinase LI89_RS19575 PF01553 Acyltransferase LI89_RS19580 PF01040 UbiA prenyltransferase family LI89_RS19585 PF04345 Chorismate lyase LI89_RS19590 PF07148 Maltose operon periplasmic protein precursor (MalM) LI89_RS19595 PF02264 LamB porin LI89_RS19600 PF17912 MalK OB fold domain LI89_RS19600 PF00005 ABC transporter LI89_RS19605 PF01547 Bacterial extracellular solute-binding protein LI89_RS19610 PF14785 Maltose transport system permease protein MalF P2 domain LI89_RS19610 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS19615 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS19620 PF06146 Phosphate-starvation-inducible E LI89_RS19625 PF00342 Phosphoglucose isomerase LI89_RS19630 PF01842 ACT domain LI89_RS19630 PF00696 Amino acid kinase family LI89_RS19635 PF01758 Sodium Bile acid symporter family LI89_RS19640 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LI89_RS19640 PF08479 POTRA domain, ShlB-type LI89_RS19640 PF17287 POTRA domain LI89_RS19645 PF13332 Hemagglutinin repeat LI89_RS19645 PF05860 haemagglutination activity domain LI89_RS19650 PF02965 Vitamin B12 dependent methionine synthase, activation domain LI89_RS19650 PF00809 Pterin binding enzyme LI89_RS19650 PF02574 Homocysteine S-methyltransferase LI89_RS19650 PF02310 B12 binding domain LI89_RS19650 PF02607 B12 binding domain LI89_RS19655 PF09339 IclR helix-turn-helix domain LI89_RS19655 PF01614 Bacterial transcriptional regulator LI89_RS19660 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LI89_RS19665 PF00463 Isocitrate lyase family LI89_RS19670 PF01274 Malate synthase LI89_RS19675 PF04204 Homoserine O-succinyltransferase LI89_RS19700 PF00132 Bacterial transferase hexapeptide (six repeats) LI89_RS19705 PF08501 Shikimate dehydrogenase substrate binding domain LI89_RS19705 PF01488 Shikimate / quinate 5-dehydrogenase LI89_RS19705 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LI89_RS19710 PF01300 Telomere recombination LI89_RS19715 PF01396 Topoisomerase DNA binding C4 zinc finger LI89_RS19720 PF04361 Protein of unknown function (DUF494) LI89_RS19725 PF17782 DprA winged helix domain LI89_RS19725 PF02481 DNA recombination-mediator protein A LI89_RS19730 PF01327 Polypeptide deformylase LI89_RS19735 PF00551 Formyl transferase LI89_RS19735 PF02911 Formyl transferase, C-terminal domain LI89_RS19740 PF01029 NusB family LI89_RS19740 PF01189 16S rRNA methyltransferase RsmB/F LI89_RS19745 PF02080 TrkA-C domain LI89_RS19745 PF02254 TrkA-N domain LI89_RS19750 PF01741 Large-conductance mechanosensitive channel, MscL LI89_RS19755 PF03889 Alternative ribosome-rescue factor A LI89_RS19760 PF13411 MerR HTH family regulatory protein LI89_RS19765 PF09350 Domain of unknown function (DUF1992) LI89_RS19770 PF01196 Ribosomal protein L17 LI89_RS19775 PF01000 RNA polymerase Rpb3/RpoA insert domain LI89_RS19775 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LI89_RS19775 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LI89_RS19780 PF01479 S4 domain LI89_RS19780 PF00163 Ribosomal protein S4/S9 N-terminal domain LI89_RS19785 PF00411 Ribosomal protein S11 LI89_RS19790 PF00416 Ribosomal protein S13/S18 LI89_RS19795 PF00444 Ribosomal protein L36 LI89_RS19800 PF00344 SecY translocase LI89_RS19805 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LI89_RS19810 PF00327 Ribosomal protein L30p/L7e LI89_RS19815 PF00333 Ribosomal protein S5, N-terminal domain LI89_RS19815 PF03719 Ribosomal protein S5, C-terminal domain LI89_RS19820 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LI89_RS19825 PF00347 Ribosomal protein L6 LI89_RS19830 PF00410 Ribosomal protein S8 LI89_RS19835 PF00253 Ribosomal protein S14p/S29e LI89_RS19840 PF00281 Ribosomal protein L5 LI89_RS19840 PF00673 ribosomal L5P family C-terminus LI89_RS19845 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LI89_RS19845 PF00467 KOW motif LI89_RS19850 PF00238 Ribosomal protein L14p/L23e LI89_RS19855 PF00366 Ribosomal protein S17 LI89_RS19860 PF00831 Ribosomal L29 protein LI89_RS19865 PF00252 Ribosomal protein L16p/L10e LI89_RS19870 PF00189 Ribosomal protein S3, C-terminal domain LI89_RS19870 PF07650 KH domain LI89_RS19875 PF00237 Ribosomal protein L22p/L17e LI89_RS19880 PF00203 Ribosomal protein S19 LI89_RS19885 PF03947 Ribosomal Proteins L2, C-terminal domain LI89_RS19885 PF00181 Ribosomal Proteins L2, RNA binding domain LI89_RS19890 PF00276 Ribosomal protein L23 LI89_RS19895 PF00573 Ribosomal protein L4/L1 family LI89_RS19900 PF00297 Ribosomal protein L3 LI89_RS19905 PF00338 Ribosomal protein S10p/S20e LI89_RS19910 PF00210 Ferritin-like domain LI89_RS19915 PF04324 BFD-like [2Fe-2S] binding domain LI89_RS19920 PF03144 Elongation factor Tu domain 2 LI89_RS19920 PF00009 Elongation factor Tu GTP binding domain LI89_RS19920 PF03143 Elongation factor Tu C-terminal domain LI89_RS19925 PF03144 Elongation factor Tu domain 2 LI89_RS19925 PF00009 Elongation factor Tu GTP binding domain LI89_RS19925 PF03764 Elongation factor G, domain IV LI89_RS19925 PF14492 Elongation Factor G, domain II LI89_RS19925 PF00679 Elongation factor G C-terminus LI89_RS19930 PF00177 Ribosomal protein S7p/S5e LI89_RS19935 PF00164 Ribosomal protein S12/S23 LI89_RS19940 PF04077 DsrH like protein LI89_RS19945 PF02635 DsrE/DsrF-like family LI89_RS19950 PF02635 DsrE/DsrF-like family LI89_RS19955 PF13309 HTH domain LI89_RS19955 PF08348 YheO-like PAS domain LI89_RS19960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LI89_RS19960 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LI89_RS19965 PF04102 SlyX LI89_RS19970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LI89_RS19975 PF09526 Probable metal-binding protein (DUF2387) LI89_RS19980 PF00999 Sodium/hydrogen exchanger family LI89_RS19980 PF02254 TrkA-N domain LI89_RS19985 PF02525 Flavodoxin-like fold LI89_RS19990 PF12848 ABC transporter LI89_RS19990 PF00005 ABC transporter LI89_RS19995 PF00535 Glycosyl transferase family 2 LI89_RS20005 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LI89_RS20010 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS20015 PF00005 ABC transporter LI89_RS20020 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LI89_RS20025 PF02567 Phenazine biosynthesis-like protein LI89_RS20030 PF01810 LysE type translocator LI89_RS20035 PF00561 alpha/beta hydrolase fold LI89_RS20040 PF06794 Uncharacterised protein family (UPF0270) LI89_RS20045 PF00485 Phosphoribulokinase / Uridine kinase family LI89_RS20050 PF02566 OsmC-like protein LI89_RS20055 PF00027 Cyclic nucleotide-binding domain LI89_RS20055 PF13545 Crp-like helix-turn-helix domain LI89_RS20060 PF12805 FUSC-like inner membrane protein yccS LI89_RS20065 PF00202 Aminotransferase class-III LI89_RS20070 PF00117 Glutamine amidotransferase class-I LI89_RS20075 PF05872 Bacterial protein of unknown function (DUF853) LI89_RS20080 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LI89_RS20085 PF11975 Family 4 glycosyl hydrolase C-terminal domain LI89_RS20085 PF02056 Family 4 glycosyl hydrolase LI89_RS20090 PF00356 Bacterial regulatory proteins, lacI family LI89_RS20095 PF07690 Major Facilitator Superfamily LI89_RS20100 PF07969 Amidohydrolase family LI89_RS20105 PF18267 Rubredoxin NAD+ reductase C-terminal domain LI89_RS20105 PF04324 BFD-like [2Fe-2S] binding domain LI89_RS20105 PF07992 Pyridine nucleotide-disulphide oxidoreductase LI89_RS20105 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LI89_RS20105 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LI89_RS20110 PF13806 Rieske-like [2Fe-2S] domain LI89_RS20115 PF01226 Formate/nitrite transporter LI89_RS20120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LI89_RS20120 PF14824 Sirohaem biosynthesis protein central LI89_RS20120 PF10414 Sirohaem synthase dimerisation region LI89_RS20125 PF00579 tRNA synthetases class I (W and Y) LI89_RS20130 PF13419 Haloacid dehalogenase-like hydrolase LI89_RS20135 PF00834 Ribulose-phosphate 3 epimerase family LI89_RS20140 PF02086 D12 class N6 adenine-specific DNA methyltransferase LI89_RS20145 PF05036 Sporulation related domain LI89_RS20150 PF01761 3-dehydroquinate synthase LI89_RS20155 PF01202 Shikimate kinase LI89_RS20160 PF00263 Bacterial type II and III secretion system protein LI89_RS20160 PF03958 Bacterial type II/III secretion system short domain LI89_RS20185 PF00905 Penicillin binding protein transpeptidase domain LI89_RS20185 PF17092 Penicillin-binding protein OB-like domain LI89_RS20185 PF00912 Transglycosylase LI89_RS20190 PF00293 NUDIX domain LI89_RS20195 PF07095 Intracellular growth attenuator protein IgaA LI89_RS20200 PF13419 Haloacid dehalogenase-like hydrolase LI89_RS20205 PF01479 S4 domain LI89_RS20210 PF01430 Hsp33 protein LI89_RS20215 PF01293 Phosphoenolpyruvate carboxykinase LI89_RS20220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS20220 PF00672 HAMP domain LI89_RS20220 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS20225 PF00486 Transcriptional regulatory protein, C terminal LI89_RS20225 PF00072 Response regulator receiver domain LI89_RS20230 PF03449 Transcription elongation factor, N-terminal LI89_RS20230 PF01272 Transcription elongation factor, GreA/GreB, C-term LI89_RS20235 PF16921 Tex protein YqgF-like domain LI89_RS20235 PF09371 Tex-like protein N-terminal domain LI89_RS20235 PF17674 HHH domain LI89_RS20235 PF00575 S1 RNA binding domain LI89_RS20240 PF04023 FeoA domain LI89_RS20245 PF17910 FeoB cytosolic helical domain LI89_RS20245 PF07670 Nucleoside recognition LI89_RS20245 PF02421 Ferrous iron transport protein B LI89_RS20245 PF07664 Ferrous iron transport protein B C terminus LI89_RS20250 PF09012 FeoC like transcriptional regulator LI89_RS20255 PF07338 Protein of unknown function (DUF1471) LI89_RS20260 PF00561 alpha/beta hydrolase fold LI89_RS20265 PF00156 Phosphoribosyl transferase domain LI89_RS20270 PF01106 NifU-like domain LI89_RS20270 PF01521 Iron-sulphur cluster biosynthesis LI89_RS20275 PF02446 4-alpha-glucanotransferase LI89_RS20280 PF00343 Carbohydrate phosphorylase LI89_RS20285 PF17874 MalT-like TPR region LI89_RS20285 PF00196 Bacterial regulatory proteins, luxR family LI89_RS20295 PF00581 Rhodanese-like domain LI89_RS20300 PF01694 Rhomboid family LI89_RS20300 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LI89_RS20305 PF00455 DeoR C terminal sensor domain LI89_RS20305 PF08220 DeoR-like helix-turn-helix domain LI89_RS20310 PF01266 FAD dependent oxidoreductase LI89_RS20310 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LI89_RS20315 PF00343 Carbohydrate phosphorylase LI89_RS20320 PF00534 Glycosyl transferases group 1 LI89_RS20320 PF08323 Starch synthase catalytic domain LI89_RS20325 PF00483 Nucleotidyl transferase LI89_RS20330 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LI89_RS20330 PF00128 Alpha amylase, catalytic domain LI89_RS20330 PF18390 Glycogen debranching enzyme C-terminal domain LI89_RS20335 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LI89_RS20335 PF02806 Alpha amylase, C-terminal all-beta domain LI89_RS20335 PF00128 Alpha amylase, catalytic domain LI89_RS20340 PF06580 Histidine kinase LI89_RS20340 PF07694 5TMR of 5TMR-LYT LI89_RS20345 PF03466 LysR substrate binding domain LI89_RS20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS20350 PF03306 Alpha-acetolactate decarboxylase LI89_RS20355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LI89_RS20355 PF00205 Thiamine pyrophosphate enzyme, central domain LI89_RS20355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LI89_RS20360 PF01118 Semialdehyde dehydrogenase, NAD binding domain LI89_RS20360 PF02774 Semialdehyde dehydrogenase, dimerisation domain LI89_RS20365 PF01914 MarC family integral membrane protein LI89_RS20370 PF01202 Shikimate kinase LI89_RS20375 PF02447 GntP family permease LI89_RS20380 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LI89_RS20380 PF00356 Bacterial regulatory proteins, lacI family LI89_RS20385 PF17954 Quercetinase C-terminal cupin domain LI89_RS20385 PF02678 Pirin LI89_RS20390 PF00583 Acetyltransferase (GNAT) family LI89_RS20395 PF01261 Xylose isomerase-like TIM barrel LI89_RS20400 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LI89_RS20400 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LI89_RS20405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LI89_RS20405 PF00205 Thiamine pyrophosphate enzyme, central domain LI89_RS20405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LI89_RS20410 PF00294 pfkB family carbohydrate kinase LI89_RS20420 PF04962 KduI/IolB family LI89_RS20425 PF00171 Aldehyde dehydrogenase family LI89_RS20435 PF07690 Major Facilitator Superfamily LI89_RS20440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS20440 PF03466 LysR substrate binding domain LI89_RS20455 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LI89_RS20460 PF05681 Fumarate hydratase (Fumerase) LI89_RS20460 PF05683 Fumarase C-terminus LI89_RS20465 PF03466 LysR substrate binding domain LI89_RS20465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LI89_RS20470 PF10414 Sirohaem synthase dimerisation region LI89_RS20470 PF14824 Sirohaem biosynthesis protein central LI89_RS20470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LI89_RS20475 PF00288 GHMP kinases N terminal domain LI89_RS20480 PF02310 B12 binding domain LI89_RS20485 PF13941 MutL protein LI89_RS20490 PF06368 Methylaspartate mutase E chain (MutE) LI89_RS20495 PF07476 Methylaspartate ammonia-lyase C-terminus LI89_RS20495 PF05034 Methylaspartate ammonia-lyase N-terminus LI89_RS20510 PF00375 Sodium:dicarboxylate symporter family LI89_RS20520 PF01384 Phosphate transporter family LI89_RS20525 PF10625 Universal stress protein B (UspB) LI89_RS20530 PF00582 Universal stress protein family LI89_RS20535 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LI89_RS20535 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LI89_RS20540 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LI89_RS20540 PF08548 Peptidase M10 serralysin C terminal LI89_RS20540 PF00413 Matrixin LI89_RS20545 PF04445 Putative SAM-dependent methyltransferase LI89_RS20550 PF01432 Peptidase family M3 LI89_RS20555 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LI89_RS20560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LI89_RS20560 PF07992 Pyridine nucleotide-disulphide oxidoreductase LI89_RS20590 PF00005 ABC transporter LI89_RS20590 PF14524 Wzt C-terminal domain LI89_RS20610 PF13419 Haloacid dehalogenase-like hydrolase LI89_RS20625 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LI89_RS20630 PF04321 RmlD substrate binding domain LI89_RS20660 PF01381 Helix-turn-helix LI89_RS20660 PF08671 Anti-repressor SinI LI89_RS20670 PF03797 Autotransporter beta-domain LI89_RS20675 PF03631 Virulence factor BrkB LI89_RS20680 PF02611 CDP-diacylglycerol pyrophosphatase LI89_RS20685 PF05170 AsmA family LI89_RS20690 PF00563 EAL domain LI89_RS20695 PF01361 Tautomerase enzyme LI89_RS20700 PF00294 pfkB family carbohydrate kinase LI89_RS20705 PF00675 Insulinase (Peptidase family M16) LI89_RS20705 PF05193 Peptidase M16 inactive domain LI89_RS20710 PF00375 Sodium:dicarboxylate symporter family LI89_RS20720 PF06917 Periplasmic pectate lyase LI89_RS20725 PF06178 Oligogalacturonate-specific porin protein (KdgM) LI89_RS20730 PF00563 EAL domain LI89_RS20730 PF17154 Gammaproteobacterial periplasmic sensor domain LI89_RS20730 PF00990 Diguanylate cyclase, GGDEF domain LI89_RS20730 PF00672 HAMP domain LI89_RS20735 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LI89_RS20740 PF01270 Glycosyl hydrolases family 8 LI89_RS20745 PF03170 Bacterial cellulose synthase subunit LI89_RS20760 PF06564 Cellulose biosynthesis protein BcsQ LI89_RS20770 PF10995 Cellulose biosynthesis GIL LI89_RS20775 PF11120 Cellulose biosynthesis protein BcsF LI89_RS20780 PF11658 Cellulose biosynthesis protein BcsG LI89_RS20785 PF00005 ABC transporter LI89_RS20785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LI89_RS20790 PF00005 ABC transporter LI89_RS20790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LI89_RS20795 PF12911 N-terminal TM domain of oligopeptide transport permease C LI89_RS20795 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS20800 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS20805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LI89_RS20810 PF13018 Extended Signal Peptide of Type V secretion system LI89_RS20810 PF04829 Pre-toxin domain with VENN motif LI89_RS20810 PF13332 Hemagglutinin repeat LI89_RS20810 PF05860 haemagglutination activity domain LI89_RS20815 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LI89_RS20815 PF17287 POTRA domain LI89_RS20815 PF08479 POTRA domain, ShlB-type LI89_RS20820 PF13332 Hemagglutinin repeat LI89_RS20820 PF13018 Extended Signal Peptide of Type V secretion system LI89_RS20820 PF05860 haemagglutination activity domain LI89_RS20820 PF04829 Pre-toxin domain with VENN motif LI89_RS20830 PF07690 Major Facilitator Superfamily LI89_RS20835 PF07730 Histidine kinase LI89_RS20835 PF05231 MASE1 LI89_RS20835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS20840 PF00196 Bacterial regulatory proteins, luxR family LI89_RS20840 PF00072 Response regulator receiver domain LI89_RS20845 PF08019 Phosphoethanolamine transferase EptA/EptB LI89_RS20845 PF00884 Sulfatase LI89_RS20850 PF02566 OsmC-like protein LI89_RS20855 PF12146 Serine aminopeptidase, S33 LI89_RS20860 PF00324 Amino acid permease LI89_RS20865 PF00221 Aromatic amino acid lyase LI89_RS20870 PF01175 Urocanase Rossmann-like domain LI89_RS20870 PF17392 Urocanase C-terminal domain LI89_RS20870 PF17391 Urocanase N-terminal domain LI89_RS20880 PF13953 PapC C-terminal domain LI89_RS20880 PF00577 Outer membrane usher protein LI89_RS20880 PF13954 PapC N-terminal domain LI89_RS20890 PF01238 Phosphomannose isomerase type I LI89_RS20895 PF00232 Glycosyl hydrolase family 1 LI89_RS20905 PF02264 LamB porin LI89_RS20910 PF02378 Phosphotransferase system, EIIC LI89_RS20915 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LI89_RS20920 PF02378 Phosphotransferase system, EIIC LI89_RS20925 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LI89_RS20930 PF00480 ROK family LI89_RS20935 PF00356 Bacterial regulatory proteins, lacI family LI89_RS20950 PF17345 Family of unknown function (DUF5375) LI89_RS20990 PF13356 Arm DNA-binding domain LI89_RS20990 PF00589 Phage integrase family LI89_RS20990 PF14659 Phage integrase, N-terminal SAM-like domain LI89_RS20995 PF12833 Helix-turn-helix domain LI89_RS21000 PF02653 Branched-chain amino acid transport system / permease component LI89_RS21005 PF00005 ABC transporter LI89_RS21010 PF13407 Periplasmic binding protein domain LI89_RS21020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LI89_RS21020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LI89_RS21025 PF02753 Pili assembly chaperone PapD, C-terminal domain LI89_RS21025 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LI89_RS21040 PF01757 Acyltransferase family LI89_RS21045 PF07690 Major Facilitator Superfamily LI89_RS21050 PF03144 Elongation factor Tu domain 2 LI89_RS21050 PF09107 Elongation factor SelB, winged helix LI89_RS21050 PF09106 Elongation factor SelB, winged helix LI89_RS21050 PF00009 Elongation factor Tu GTP binding domain LI89_RS21055 PF03841 L-seryl-tRNA selenium transferase LI89_RS21055 PF12390 Selenocysteine synthase N terminal LI89_RS21060 PF04216 Protein involved in formate dehydrogenase formation LI89_RS21065 PF01292 Prokaryotic cytochrome b561 LI89_RS21070 PF09163 Formate dehydrogenase N, transmembrane LI89_RS21070 PF13247 4Fe-4S dicluster domain LI89_RS21075 PF01568 Molydopterin dinucleotide binding domain LI89_RS21075 PF00384 Molybdopterin oxidoreductase LI89_RS21075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS21080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS21080 PF00384 Molybdopterin oxidoreductase LI89_RS21080 PF01568 Molydopterin dinucleotide binding domain LI89_RS21085 PF02634 FdhD/NarQ family LI89_RS21090 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LI89_RS21090 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LI89_RS21095 PF02203 Tar ligand binding domain homologue LI89_RS21095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LI89_RS21095 PF00672 HAMP domain LI89_RS21100 PF03475 3-alpha domain LI89_RS21100 PF03473 MOSC domain LI89_RS21105 PF01850 PIN domain LI89_RS21110 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LI89_RS21115 PF10928 Protein of unknown function (DUF2810) LI89_RS21120 PF00392 Bacterial regulatory proteins, gntR family LI89_RS21120 PF00155 Aminotransferase class I and II LI89_RS21130 PF05068 Mannitol repressor LI89_RS21135 PF08125 Mannitol dehydrogenase C-terminal domain LI89_RS21135 PF01232 Mannitol dehydrogenase Rossmann domain LI89_RS21140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LI89_RS21140 PF02378 Phosphotransferase system, EIIC LI89_RS21140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LI89_RS21145 PF11254 Protein of unknown function (DUF3053) LI89_RS21150 PF02092 Glycyl-tRNA synthetase beta subunit LI89_RS21150 PF05746 DALR anticodon binding domain LI89_RS21155 PF02091 Glycyl-tRNA synthetase alpha subunit LI89_RS21160 PF03352 Methyladenine glycosylase LI89_RS21180 PF13488 Glycine zipper LI89_RS21180 PF00691 OmpA family LI89_RS21190 PF07690 Major Facilitator Superfamily LI89_RS21195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LI89_RS21195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LI89_RS21200 PF00128 Alpha amylase, catalytic domain LI89_RS21205 PF00155 Aminotransferase class I and II LI89_RS21210 PF06826 Predicted Permease Membrane Region LI89_RS21210 PF02080 TrkA-C domain LI89_RS21215 PF00011 Hsp20/alpha crystallin family LI89_RS21220 PF00011 Hsp20/alpha crystallin family LI89_RS21225 PF07119 Protein of unknown function (DUF1375) LI89_RS21230 PF12566 Protein of unknown function (DUF3748) LI89_RS21230 PF07676 WD40-like Beta Propeller Repeat LI89_RS21235 PF13291 ACT domain LI89_RS21235 PF00291 Pyridoxal-phosphate dependent enzyme LI89_RS21240 PF02423 Ornithine cyclodeaminase/mu-crystallin family LI89_RS21245 PF00480 ROK family LI89_RS21255 PF18053 DNA gyrase B subunit insert domain LI89_RS21255 PF01751 Toprim domain LI89_RS21255 PF00986 DNA gyrase B subunit, carboxyl terminus LI89_RS21255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS21255 PF00204 DNA gyrase B LI89_RS21260 PF02463 RecF/RecN/SMC N terminal domain LI89_RS21265 PF00712 DNA polymerase III beta subunit, N-terminal domain LI89_RS21265 PF02767 DNA polymerase III beta subunit, central domain LI89_RS21265 PF02768 DNA polymerase III beta subunit, C-terminal domain LI89_RS21270 PF11638 DnaA N-terminal domain LI89_RS21270 PF00308 Bacterial dnaA protein LI89_RS21270 PF08299 Bacterial dnaA protein helix-turn-helix LI89_RS21275 PF00468 Ribosomal protein L34 LI89_RS21280 PF00825 Ribonuclease P LI89_RS21285 PF01809 Putative membrane protein insertion efficiency factor LI89_RS21290 PF14849 YidC periplasmic domain LI89_RS21290 PF02096 60Kd inner membrane protein LI89_RS21295 PF01926 50S ribosome-binding GTPase LI89_RS21295 PF12631 MnmE helical domain LI89_RS21295 PF10396 GTP-binding protein TrmE N-terminus LI89_RS21300 PF07055 Enoyl reductase FAD binding domain LI89_RS21300 PF12241 Trans-2-enoyl-CoA reductase catalytic region LI89_RS21300 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LI89_RS21310 PF00005 ABC transporter LI89_RS21310 PF09383 NIL domain LI89_RS21315 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS21320 PF00672 HAMP domain LI89_RS21320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LI89_RS21320 PF02203 Tar ligand binding domain homologue LI89_RS21325 PF03358 NADPH-dependent FMN reductase LI89_RS21330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LI89_RS21330 PF00512 His Kinase A (phospho-acceptor) domain LI89_RS21335 PF00072 Response regulator receiver domain LI89_RS21335 PF00196 Bacterial regulatory proteins, luxR family LI89_RS21345 PF00860 Permease family LI89_RS21350 PF13419 Haloacid dehalogenase-like hydrolase LI89_RS21355 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS21360 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS21365 PF00497 Bacterial extracellular solute-binding proteins, family 3 LI89_RS21375 PF01895 PhoU domain LI89_RS21380 PF00005 ABC transporter LI89_RS21385 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS21390 PF00528 Binding-protein-dependent transport system inner membrane component LI89_RS21395 PF12849 PBP superfamily domain LI89_RS21400 PF01380 SIS domain LI89_RS21405 PF12804 MobA-like NTP transferase domain LI89_RS21405 PF00132 Bacterial transferase hexapeptide (six repeats) LI89_RS21410 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LI89_RS21410 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LI89_RS21415 PF02874 ATP synthase alpha/beta family, beta-barrel domain LI89_RS21415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LI89_RS21420 PF00231 ATP synthase LI89_RS21425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LI89_RS21425 PF00306 ATP synthase alpha/beta chain, C terminal domain LI89_RS21425 PF02874 ATP synthase alpha/beta family, beta-barrel domain LI89_RS21430 PF00213 ATP synthase delta (OSCP) subunit LI89_RS21435 PF00430 ATP synthase B/B' CF(0) LI89_RS21440 PF00137 ATP synthase subunit C LI89_RS21445 PF00119 ATP synthase A chain LI89_RS21450 PF03899 ATP synthase I chain LI89_RS21455 PF02527 rRNA small subunit methyltransferase G LI89_RS21460 PF01134 Glucose inhibited division protein A LI89_RS21460 PF13932 GidA associated domain LI89_RS21720 PF03616 Sodium/glutamate symporter LI89_RS21880 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LI89_RS21880 PF01676 Metalloenzyme superfamily LI89_RS21910 PF00588 SpoU rRNA Methylase family LI89_RS21975 PF08046 IlvGEDA operon leader peptide LI89_RS21980 PF03515 Colicin-like bacteriocin tRNase domain LI89_RS21980 PF09000 Cytotoxic LI89_RS21980 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 LI89_RS22030 PF07043 Protein of unknown function (DUF1328) LI89_RS22035 PF08254 Threonine leader peptide LI89_RS22045 PF05860 haemagglutination activity domain LI89_RS22045 PF04829 Pre-toxin domain with VENN motif LI89_RS22045 PF13332 Hemagglutinin repeat LI89_RS22045 PF05594 Haemagluttinin repeat LI89_RS22045 PF15526 Novel toxin 21 LI89_RS22070 PF03150 Di-haem cytochrome c peroxidase LI89_RS22070 PF00034 Cytochrome c LI89_RS22070 PF14376 Haem-binding domain LI89_RS22175 PF00589 Phage integrase family LI89_RS22175 PF13356 Arm DNA-binding domain LI89_RS22195 PF04606 Ogr/Delta-like zinc finger LI89_RS22230 PF00707 Translation initiation factor IF-3, C-terminal domain LI89_RS22230 PF05198 Translation initiation factor IF-3, N-terminal domain LI89_RS22235 PF05154 TM2 domain LI89_RS22325 PF02048 Heat-stable enterotoxin ST LI89_RS22330 PF13998 MgrB protein LI89_RS22345 PF10968 Protein of unknown function (DUF2770) LI89_RS22355 PF04957 Ribosome modulation factor LI89_RS22400 PF05594 Haemagluttinin repeat LI89_RS22400 PF13332 Hemagglutinin repeat LI89_RS22400 PF05860 haemagglutination activity domain LI89_RS22400 PF04829 Pre-toxin domain with VENN motif LI89_RS22415 PF04829 Pre-toxin domain with VENN motif LI89_RS22415 PF13332 Hemagglutinin repeat LI89_RS22415 PF05594 Haemagluttinin repeat LI89_RS22415 PF05860 haemagglutination activity domain LI89_RS22415 PF15526 Novel toxin 21 LI89_RS22515 PF06174 Protein of unknown function (DUF987) LI89_RS22535 PF01695 IstB-like ATP binding protein LI89_RS22595 PF07992 Pyridine nucleotide-disulphide oxidoreductase LI89_RS22595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LI89_RS22605 PF00589 Phage integrase family LI89_RS22620 PF04606 Ogr/Delta-like zinc finger LI89_RS22630 PF01037 Lrp/AsnC ligand binding domain