LI89_RS00010 SM00344 helix_turn_helix ASNC type LI89_RS00025 SM00327 von Willebrand factor (vWF) type A domain LI89_RS00030 SM00382 ATPases associated with a variety of cellular activities LI89_RS00045 SM00382 ATPases associated with a variety of cellular activities LI89_RS00065 SM00354 helix_turn _helix lactose operon repressor LI89_RS00075 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS00075 SM00895 LI89_RS00075 LI89_RS00125 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LI89_RS00125 SM00474 3'-5' exonuclease LI89_RS00125 SM00475 5'-3' exonuclease LI89_RS00125 SM00482 DNA polymerase A domain LI89_RS00140 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_RS00145 SM00382 ATPases associated with a variety of cellular activities LI89_RS00145 SM00448 cheY-homologous receiver domain LI89_RS00150 SM00091 PAS domain LI89_RS00150 SM00387 Histidine kinase-like ATPases LI89_RS00150 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS00155 SM01230 LI89_RS00155 LI89_RS00190 SM00421 helix_turn_helix, Lux Regulon LI89_RS00195 SM00421 helix_turn_helix, Lux Regulon LI89_RS00200 SM00421 helix_turn_helix, Lux Regulon LI89_RS00220 SM00487 DEAD-like helicases superfamily LI89_RS00220 SM00490 helicase superfamily c-terminal domain LI89_RS00230 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_RS00230 SM00954 Region found in RelA / SpoT proteins LI89_RS00235 SM01409 LI89_RS00235 LI89_RS00240 SM00072 Guanylate kinase homologues. LI89_RS00245 SM00532 Ligase N family LI89_RS00270 SM00052 Putative diguanylate phosphodiesterase LI89_RS00270 SM00091 PAS domain LI89_RS00270 SM00267 diguanylate cyclase LI89_RS00280 SM00849 Metallo-beta-lactamase superfamily LI89_RS00330 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain LI89_RS00330 SM01232 LI89_RS00330 LI89_RS00370 SM00829 Enoylreductase LI89_RS00390 SM00450 Rhodanese Homology Domain LI89_RS00410 SM00971 Serine acetyltransferase, N-terminal LI89_RS00420 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS00425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS00425 SM00387 Histidine kinase-like ATPases LI89_RS00425 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS00430 SM00448 cheY-homologous receiver domain LI89_RS00430 SM00862 Transcriptional regulatory protein, C terminal LI89_RS00520 SM00382 ATPases associated with a variety of cellular activities LI89_RS00520 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_RS00535 SM00354 helix_turn _helix lactose operon repressor LI89_RS00540 SM00487 DEAD-like helicases superfamily LI89_RS00540 SM00490 helicase superfamily c-terminal domain LI89_RS00580 SM00859 Semialdehyde dehydrogenase, NAD binding domain LI89_RS00620 SM00382 ATPases associated with a variety of cellular activities LI89_RS00710 SM00155 Phospholipase D. Active site motifs. LI89_RS00775 SM00382 ATPases associated with a variety of cellular activities LI89_RS00800 SM00382 ATPases associated with a variety of cellular activities LI89_RS00900 SM00060 Fibronectin type 3 domain LI89_RS00910 SM00487 DEAD-like helicases superfamily LI89_RS00910 SM00490 helicase superfamily c-terminal domain LI89_RS00920 SM00357 Cold shock protein domain LI89_RS00920 SM00382 ATPases associated with a variety of cellular activities LI89_RS00920 SM00959 Rho termination factor, N-terminal domain LI89_RS00940 SM00984 UDP binding domain LI89_RS01035 SM01219 LI89_RS01035 LI89_RS01105 SM00341 Helicase and RNase D C-terminal LI89_RS01105 SM00487 DEAD-like helicases superfamily LI89_RS01105 SM00490 helicase superfamily c-terminal domain LI89_RS01105 SM00956 LI89_RS01105 LI89_RS01200 SM00382 ATPases associated with a variety of cellular activities LI89_RS01200 SM00962 SRP54-type protein, GTPase domain LI89_RS01200 SM00963 SRP54-type protein, helical bundle domain LI89_RS01205 SM00382 ATPases associated with a variety of cellular activities LI89_RS01240 SM00382 ATPases associated with a variety of cellular activities LI89_RS01245 SM00382 ATPases associated with a variety of cellular activities LI89_RS01295 SM00382 ATPases associated with a variety of cellular activities LI89_RS01390 SM01004 Delta-aminolevulinic acid dehydratase LI89_RS01395 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. LI89_RS01515 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. LI89_RS01515 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LI89_RS01520 SM00649 Ribosomal protein L11/L12 LI89_RS01545 SM00663 RNA polymerase I subunit A N-terminus LI89_RS01550 SM00876 Biotin and Thiamin Synthesis associated domain LI89_RS01610 SM00411 bacterial (prokaryotic) histone like domain LI89_RS01620 SM01209 LI89_RS01620 LI89_RS01620 SM01210 LI89_RS01620 LI89_RS01625 SM00798 AICARFT/IMPCHase bienzyme LI89_RS01625 SM00851 MGS-like domain LI89_RS01695 SM00421 helix_turn_helix, Lux Regulon LI89_RS01695 SM00448 cheY-homologous receiver domain LI89_RS01700 SM00387 Histidine kinase-like ATPases LI89_RS01700 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS01700 SM00448 cheY-homologous receiver domain LI89_RS01765 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS01815 SM00382 ATPases associated with a variety of cellular activities LI89_RS01880 SM00965 Secretin and TonB N terminus short domain LI89_RS01885 SM00382 ATPases associated with a variety of cellular activities LI89_RS01910 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS01915 SM00382 ATPases associated with a variety of cellular activities LI89_RS01955 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_RS02020 SM00883 Chaperonin 10 Kd subunit LI89_RS02045 SM00841 Elongation factor P, C-terminal LI89_RS02045 SM01185 LI89_RS02045 LI89_RS02105 SM00479 LI89_RS02105 LI89_RS02140 SM00257 Lysin motif LI89_RS02140 SM00646 LI89_RS02140 LI89_RS02145 SM00853 MutL C terminal dimerisation domain LI89_RS02145 SM01340 LI89_RS02145 LI89_RS02165 SM00244 prohibitin homologues LI89_RS02170 SM00244 prohibitin homologues LI89_RS02180 SM00788 Adenylosuccinate synthetase LI89_RS02190 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_RS02190 SM00357 Cold shock protein domain LI89_RS02190 SM00955 LI89_RS02190 LI89_RS02195 SM00967 RNA 2'-O ribose methyltransferase substrate binding LI89_RS02280 SM01091 Transporter associated domain LI89_RS02310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_RS02310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS02375 SM00387 Histidine kinase-like ATPases LI89_RS02375 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS02380 SM00448 cheY-homologous receiver domain LI89_RS02380 SM00862 Transcriptional regulatory protein, C terminal LI89_RS02395 SM01103 LI89_RS02395 LI89_RS02405 SM00382 ATPases associated with a variety of cellular activities LI89_RS02440 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_RS02440 SM00322 K homology RNA-binding domain LI89_RS02445 SM00173 Ras subfamily of RAS small GTPases LI89_RS02460 SM01387 LI89_RS02460 LI89_RS02465 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_RS02465 SM00322 K homology RNA-binding domain LI89_RS02470 SM00028 Tetratricopeptide repeats LI89_RS02475 SM00487 DEAD-like helicases superfamily LI89_RS02475 SM00490 helicase superfamily c-terminal domain LI89_RS02575 SM00382 ATPases associated with a variety of cellular activities LI89_RS02595 SM00859 Semialdehyde dehydrogenase, NAD binding domain LI89_RS02605 SM00072 Guanylate kinase homologues. LI89_RS02615 SM00382 ATPases associated with a variety of cellular activities LI89_RS02620 SM00382 ATPases associated with a variety of cellular activities LI89_RS02645 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS02645 SM00866 LI89_RS02645 LI89_RS02690 SM00382 ATPases associated with a variety of cellular activities LI89_RS02695 SM00382 ATPases associated with a variety of cellular activities LI89_RS02860 SM00421 helix_turn_helix, Lux Regulon LI89_RS02895 SM01133 LI89_RS02895 LI89_RS02915 SM00382 ATPases associated with a variety of cellular activities LI89_RS02970 SM01120 LI89_RS02970 LI89_RS03015 SM00091 PAS domain LI89_RS03020 SM00354 helix_turn _helix lactose operon repressor LI89_RS03025 SM00640 Glycosyl hydrolases family 32 LI89_RS03055 SM00267 diguanylate cyclase LI89_RS03105 SM00749 bacterial OsmY and nodulation domain LI89_RS03125 SM01133 LI89_RS03125 LI89_RS03130 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain LI89_RS03155 SM00382 ATPases associated with a variety of cellular activities LI89_RS03175 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS03180 SM00829 Enoylreductase LI89_RS03190 SM00382 ATPases associated with a variety of cellular activities LI89_RS03200 SM00267 diguanylate cyclase LI89_RS03210 SM00831 Cation transporter/ATPase, N-terminus LI89_RS03230 SM00855 Phosphoglycerate mutase family LI89_RS03235 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS03235 SM00871 Bacterial transcription activator, effector binding domain LI89_RS03245 SM00448 cheY-homologous receiver domain LI89_RS03245 SM00862 Transcriptional regulatory protein, C terminal LI89_RS03280 SM00852 Probable molybdopterin binding domain LI89_RS03305 SM00271 DnaJ molecular chaperone homology domain LI89_RS03325 SM00904 Riboflavin kinase LI89_RS03355 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain LI89_RS03360 SM00851 MGS-like domain LI89_RS03360 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LI89_RS03395 SM00650 Ribosomal RNA adenine dimethylases LI89_RS03415 SM00271 DnaJ molecular chaperone homology domain LI89_RS03425 SM00634 Bacterial Ig-like domain (group 1) LI89_RS03430 SM00487 DEAD-like helicases superfamily LI89_RS03430 SM00490 helicase superfamily c-terminal domain LI89_RS03435 SM00486 DNA polymerase type-B family LI89_RS03445 SM00382 ATPases associated with a variety of cellular activities LI89_RS03520 SM01329 LI89_RS03520 LI89_RS03525 SM00917 LeuA allosteric (dimerisation) domain LI89_RS03550 SM00354 helix_turn _helix lactose operon repressor LI89_RS03625 SM00842 Cell division protein FtsA LI89_RS03630 SM00864 Tubulin/FtsZ family, GTPase domain LI89_RS03630 SM00865 Tubulin/FtsZ family, C-terminal domain LI89_RS03650 SM00957 SecA DEAD-like domain LI89_RS03650 SM00958 SecA preprotein cross-linking domain LI89_RS03675 SM01240 LI89_RS03675 LI89_RS03700 SM00644 LI89_RS03700 LI89_RS03715 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS03715 SM00895 LI89_RS03715 LI89_RS03740 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS03815 SM00947 Carbonic anhydrase LI89_RS03820 SM00382 ATPases associated with a variety of cellular activities LI89_RS03880 SM00487 DEAD-like helicases superfamily LI89_RS03880 SM00490 helicase superfamily c-terminal domain LI89_RS03880 SM00847 Helicase associated domain (HA2) Add an annotation LI89_RS03890 SM00382 ATPases associated with a variety of cellular activities LI89_RS03935 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_RS03940 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_RS03945 SM00073 Histidine Phosphotransfer domain LI89_RS03945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS03945 SM00387 Histidine kinase-like ATPases LI89_RS03945 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS03945 SM00448 cheY-homologous receiver domain LI89_RS03955 SM00954 Region found in RelA / SpoT proteins LI89_RS03970 SM01192 LI89_RS03970 LI89_RS03970 SM01193 LI89_RS03970 LI89_RS04065 SM00382 ATPases associated with a variety of cellular activities LI89_RS04075 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS04075 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LI89_RS04110 SM00257 Lysin motif LI89_RS04120 SM00533 DNA-binding domain of DNA mismatch repair MUTS family LI89_RS04120 SM00534 ATPase domain of DNA mismatch repair MUTS family LI89_RS04190 SM00382 ATPases associated with a variety of cellular activities LI89_RS04200 SM00382 ATPases associated with a variety of cellular activities LI89_RS04210 SM00825 Beta-ketoacyl synthase LI89_RS04225 SM00822 LI89_RS04225 LI89_RS04230 SM00869 Autotransporter beta-domain LI89_RS04250 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS04265 SM00382 ATPases associated with a variety of cellular activities LI89_RS04280 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS04290 SM00838 Elongation factor G C-terminus LI89_RS04290 SM00889 Elongation factor G, domain IV LI89_RS04295 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LI89_RS04335 SM01012 LI89_RS04335 LI89_RS04350 SM00382 ATPases associated with a variety of cellular activities LI89_RS04400 SM00382 ATPases associated with a variety of cellular activities LI89_RS04410 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_RS04410 SM01134 LI89_RS04410 LI89_RS04415 SM01007 Class II Aldolase and Adducin N-terminal domain LI89_RS04420 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_RS04420 SM01134 LI89_RS04420 LI89_RS04445 SM01007 Class II Aldolase and Adducin N-terminal domain LI89_RS04455 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS04495 SM00382 ATPases associated with a variety of cellular activities LI89_RS04510 SM00861 Transketolase, pyrimidine binding domain LI89_RS04540 SM00382 ATPases associated with a variety of cellular activities LI89_RS04550 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LI89_RS04610 SM01091 Transporter associated domain LI89_RS04620 SM00382 ATPases associated with a variety of cellular activities LI89_RS04620 SM00962 SRP54-type protein, GTPase domain LI89_RS04620 SM00963 SRP54-type protein, helical bundle domain LI89_RS04655 SM00448 cheY-homologous receiver domain LI89_RS04655 SM00850 LytTr DNA-binding domain LI89_RS04665 SM00830 Chorismate mutase type II LI89_RS04670 SM00830 Chorismate mutase type II LI89_RS04685 SM00363 S4 RNA-binding domain LI89_RS04695 SM00382 ATPases associated with a variety of cellular activities LI89_RS04695 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_RS04740 SM00155 Phospholipase D. Active site motifs. LI89_RS04745 SM00881 CoA binding domain LI89_RS04750 SM01144 LI89_RS04750 LI89_RS04760 SM00967 RNA 2'-O ribose methyltransferase substrate binding LI89_RS04780 SM00347 helix_turn_helix multiple antibiotic resistance protein LI89_RS04825 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS04840 SM00382 ATPases associated with a variety of cellular activities LI89_RS04865 SM01007 Class II Aldolase and Adducin N-terminal domain LI89_RS04895 SM00710 Parallel beta-helix repeats LI89_RS04935 SM00900 LI89_RS04935 LI89_RS05015 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LI89_RS05025 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS05025 SM00866 LI89_RS05025 LI89_RS05045 SM01068 Putative carbohydrate binding domain LI89_RS05115 SM00448 cheY-homologous receiver domain LI89_RS05115 SM00862 Transcriptional regulatory protein, C terminal LI89_RS05120 SM00091 PAS domain LI89_RS05120 SM00387 Histidine kinase-like ATPases LI89_RS05120 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS05140 SM00642 Alpha-amylase domain LI89_RS05180 SM01323 LI89_RS05180 LI89_RS05230 SM00861 Transketolase, pyrimidine binding domain LI89_RS05245 SM00981 LI89_RS05245 LI89_RS05325 SM00382 ATPases associated with a variety of cellular activities LI89_RS05325 SM00994 ClpX C4-type zinc finger LI89_RS05325 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_RS05330 SM00382 ATPases associated with a variety of cellular activities LI89_RS05330 SM00464 Found in ATP-dependent protease La (LON) LI89_RS05335 SM00411 bacterial (prokaryotic) histone like domain LI89_RS05345 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LI89_RS05375 SM00344 helix_turn_helix ASNC type LI89_RS05380 SM00382 ATPases associated with a variety of cellular activities LI89_RS05385 SM00382 ATPases associated with a variety of cellular activities LI89_RS05390 SM00938 Nitrogen regulatory protein P-II LI89_RS05440 SM00382 ATPases associated with a variety of cellular activities LI89_RS05535 SM00382 ATPases associated with a variety of cellular activities LI89_RS05545 SM00493 LI89_RS05545 LI89_RS05550 SM00387 Histidine kinase-like ATPases LI89_RS05645 SM00422 helix_turn_helix, mercury resistance LI89_RS05655 SM00244 prohibitin homologues LI89_RS05665 SM00822 LI89_RS05665 LI89_RS05675 SM00382 ATPases associated with a variety of cellular activities LI89_RS05690 SM01001 AIR carboxylase LI89_RS05705 SM00840 LI89_RS05705 LI89_RS05765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS05765 SM00387 Histidine kinase-like ATPases LI89_RS05765 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS05770 SM00448 cheY-homologous receiver domain LI89_RS05770 SM00862 Transcriptional regulatory protein, C terminal LI89_RS05785 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. LI89_RS05800 SM00382 ATPases associated with a variety of cellular activities LI89_RS05825 SM00421 helix_turn_helix, Lux Regulon LI89_RS05835 SM00357 Cold shock protein domain LI89_RS05845 SM00267 diguanylate cyclase LI89_RS05855 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_RS05870 SM00936 Penicillin-binding protein 5, C-terminal domain LI89_RS05925 SM00235 Zinc-dependent metalloprotease LI89_RS05930 SM00382 ATPases associated with a variety of cellular activities LI89_RS05945 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS05960 SM00116 Domain in cystathionine beta-synthase and other proteins. LI89_RS05960 SM01091 Transporter associated domain LI89_RS05975 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_RS06060 SM01081 Putative carbohydrate binding domain LI89_RS06075 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_RS06110 SM00448 cheY-homologous receiver domain LI89_RS06110 SM00862 Transcriptional regulatory protein, C terminal LI89_RS06115 SM00387 Histidine kinase-like ATPases LI89_RS06115 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS06180 SM00796 Allophanate hydrolase subunit 1 LI89_RS06185 SM00797 Allophanate hydrolase subunit 2 LI89_RS06235 SM00861 Transketolase, pyrimidine binding domain LI89_RS06250 SM00881 CoA binding domain LI89_RS06375 SM00855 Phosphoglycerate mutase family LI89_RS06380 SM00477 DNA/RNA non-specific endonuclease LI89_RS06380 SM00892 DNA/RNA non-specific endonuclease LI89_RS06415 SM00382 ATPases associated with a variety of cellular activities LI89_RS06440 SM00382 ATPases associated with a variety of cellular activities LI89_RS06460 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_RS06460 SM00876 Biotin and Thiamin Synthesis associated domain LI89_RS06480 SM00382 ATPases associated with a variety of cellular activities LI89_RS06485 SM00487 DEAD-like helicases superfamily LI89_RS06485 SM00490 helicase superfamily c-terminal domain LI89_RS06500 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_RS06535 SM00382 ATPases associated with a variety of cellular activities LI89_RS06550 SM00487 DEAD-like helicases superfamily LI89_RS06550 SM00490 helicase superfamily c-terminal domain LI89_RS06575 SM01118 LI89_RS06575 LI89_RS06580 SM00507 HNH nucleases LI89_RS06595 SM00382 ATPases associated with a variety of cellular activities LI89_RS06640 SM00382 ATPases associated with a variety of cellular activities LI89_RS06645 SM00450 Rhodanese Homology Domain LI89_RS06670 SM00382 ATPases associated with a variety of cellular activities LI89_RS06715 SM00487 DEAD-like helicases superfamily LI89_RS06715 SM00488 LI89_RS06715 LI89_RS06715 SM00491 LI89_RS06715 LI89_RS06740 SM00903 Flavin reductase like domain LI89_RS06750 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_RS06750 SM00091 PAS domain LI89_RS06750 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_RS06755 SM00382 ATPases associated with a variety of cellular activities LI89_RS06765 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS06765 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LI89_RS06795 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. LI89_RS06835 SM00382 ATPases associated with a variety of cellular activities LI89_RS06845 SM00852 Probable molybdopterin binding domain LI89_RS06860 SM00382 ATPases associated with a variety of cellular activities LI89_RS06885 SM00829 Enoylreductase LI89_RS06910 SM00354 helix_turn _helix lactose operon repressor LI89_RS06920 SM00382 ATPases associated with a variety of cellular activities LI89_RS06935 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LI89_RS06935 SM00382 ATPases associated with a variety of cellular activities LI89_RS06940 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS07020 SM00919 Malic enzyme, NAD binding domain LI89_RS07020 SM01274 LI89_RS07020 LI89_RS07095 SM01091 Transporter associated domain LI89_RS07110 SM01350 LI89_RS07110 LI89_RS07165 SM00382 ATPases associated with a variety of cellular activities LI89_RS07175 SM00382 ATPases associated with a variety of cellular activities LI89_RS07225 SM00382 ATPases associated with a variety of cellular activities LI89_RS07240 SM00421 helix_turn_helix, Lux Regulon LI89_RS07270 SM00877 LI89_RS07270 LI89_RS07275 SM00877 LI89_RS07275 LI89_RS07315 SM00877 LI89_RS07315 LI89_RS07320 SM00877 LI89_RS07320 LI89_RS07350 SM00877 LI89_RS07350 LI89_RS07355 SM00877 LI89_RS07355 LI89_RS07365 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS07445 SM00382 ATPases associated with a variety of cellular activities LI89_RS07465 SM00855 Phosphoglycerate mutase family LI89_RS07495 SM00421 helix_turn_helix, Lux Regulon LI89_RS07540 SM00382 ATPases associated with a variety of cellular activities LI89_RS07540 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_RS07645 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_RS07645 SM01134 LI89_RS07645 LI89_RS07655 SM00260 Two component signalling adaptor domain LI89_RS07655 SM00448 cheY-homologous receiver domain LI89_RS07675 SM00382 ATPases associated with a variety of cellular activities LI89_RS07705 SM00829 Enoylreductase LI89_RS07710 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS07755 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS07755 SM00387 Histidine kinase-like ATPases LI89_RS07755 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS07755 SM00448 cheY-homologous receiver domain LI89_RS07760 SM00421 helix_turn_helix, Lux Regulon LI89_RS07760 SM00448 cheY-homologous receiver domain LI89_RS07790 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS07815 SM00382 ATPases associated with a variety of cellular activities LI89_RS07835 SM00387 Histidine kinase-like ATPases LI89_RS07840 SM00421 helix_turn_helix, Lux Regulon LI89_RS07840 SM00448 cheY-homologous receiver domain LI89_RS07845 SM00448 cheY-homologous receiver domain LI89_RS07850 SM00091 PAS domain LI89_RS07850 SM00387 Histidine kinase-like ATPases LI89_RS07855 SM00764 Citrate lyase ligase C-terminal domain LI89_RS07950 SM00382 ATPases associated with a variety of cellular activities LI89_RS07980 SM00382 ATPases associated with a variety of cellular activities LI89_RS08055 SM00344 helix_turn_helix ASNC type LI89_RS08065 SM00829 Enoylreductase LI89_RS08070 SM01038 Beta galactosidase small chain LI89_RS08075 SM00354 helix_turn _helix lactose operon repressor LI89_RS08080 SM00357 Cold shock protein domain LI89_RS08090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_RS08090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS08105 SM00831 Cation transporter/ATPase, N-terminus LI89_RS08110 SM00829 Enoylreductase LI89_RS08140 SM00073 Histidine Phosphotransfer domain LI89_RS08140 SM00260 Two component signalling adaptor domain LI89_RS08140 SM00387 Histidine kinase-like ATPases LI89_RS08140 SM01231 LI89_RS08140 LI89_RS08145 SM00260 Two component signalling adaptor domain LI89_RS08150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_RS08150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS08150 SM00319 Homologues of the ligand binding domain of Tar LI89_RS08155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_RS08155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS08155 SM00319 Homologues of the ligand binding domain of Tar LI89_RS08160 SM00138 Methyltransferase, chemotaxis proteins LI89_RS08165 SM00448 cheY-homologous receiver domain LI89_RS08170 SM00448 cheY-homologous receiver domain LI89_RS08200 SM00634 Bacterial Ig-like domain (group 1) LI89_RS08215 SM00858 LI89_RS08215 LI89_RS08260 SM00047 Lysozyme subfamily 2 LI89_RS08320 SM00382 ATPases associated with a variety of cellular activities LI89_RS08345 SM00478 endonuclease III LI89_RS08350 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_RS08355 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS08415 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS08415 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LI89_RS08425 SM00382 ATPases associated with a variety of cellular activities LI89_RS08470 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS08475 SM00612 LI89_RS08475 LI89_RS08485 SM00903 Flavin reductase like domain LI89_RS08555 SM00642 Alpha-amylase domain LI89_RS08575 SM00421 helix_turn_helix, Lux Regulon LI89_RS08575 SM00448 cheY-homologous receiver domain LI89_RS08580 SM00465 GIY-YIG type nucleases (URI domain) LI89_RS08855 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS08880 SM00382 ATPases associated with a variety of cellular activities LI89_RS09020 SM00635 Bacterial Ig-like domain 2 LI89_RS09085 SM00060 Fibronectin type 3 domain LI89_RS09110 SM00869 Autotransporter beta-domain LI89_RS09115 SM00857 Resolvase, N terminal domain LI89_RS09170 SM00448 cheY-homologous receiver domain LI89_RS09175 SM00387 Histidine kinase-like ATPases LI89_RS09180 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_RS09180 SM01134 LI89_RS09180 LI89_RS09190 SM01007 Class II Aldolase and Adducin N-terminal domain LI89_RS09240 SM00382 ATPases associated with a variety of cellular activities LI89_RS09335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS09335 SM00387 Histidine kinase-like ATPases LI89_RS09350 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS09395 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS09395 SM00866 LI89_RS09395 LI89_RS09420 SM00257 Lysin motif LI89_RS09460 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_RS09460 SM01134 LI89_RS09460 LI89_RS09475 SM00363 S4 RNA-binding domain LI89_RS09520 SM01022 LI89_RS09520 LI89_RS09530 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_RS09530 SM00091 PAS domain LI89_RS09530 SM00267 diguanylate cyclase LI89_RS09535 SM00972 Spore Coat Protein U domain LI89_RS09550 SM00972 Spore Coat Protein U domain LI89_RS09555 SM00972 Spore Coat Protein U domain LI89_RS09560 SM00972 Spore Coat Protein U domain LI89_RS09585 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LI89_RS09590 SM00945 ProQ/FINO family LI89_RS09595 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_RS09595 SM00245 tail specific protease LI89_RS09635 SM00346 helix_turn_helix isocitrate lyase regulation LI89_RS09640 SM00644 LI89_RS09640 LI89_RS09670 SM00382 ATPases associated with a variety of cellular activities LI89_RS09760 SM00382 ATPases associated with a variety of cellular activities LI89_RS09810 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LI89_RS09835 SM00873 B3/4 domain LI89_RS09835 SM00874 tRNA synthetase B5 domain LI89_RS09835 SM00896 Ferredoxin-fold anticodon binding domain LI89_RS09840 SM00411 bacterial (prokaryotic) histone like domain LI89_RS09860 SM00382 ATPases associated with a variety of cellular activities LI89_RS09980 SM00382 ATPases associated with a variety of cellular activities LI89_RS10055 SM00354 helix_turn _helix lactose operon repressor LI89_RS10075 SM00479 LI89_RS10075 LI89_RS10125 SM00347 helix_turn_helix multiple antibiotic resistance protein LI89_RS10150 SM00363 S4 RNA-binding domain LI89_RS10200 SM00382 ATPases associated with a variety of cellular activities LI89_RS10205 SM00382 ATPases associated with a variety of cellular activities LI89_RS10235 SM00382 ATPases associated with a variety of cellular activities LI89_RS10270 SM00953 LI89_RS10270 LI89_RS10280 SM00091 PAS domain LI89_RS10280 SM00382 ATPases associated with a variety of cellular activities LI89_RS10290 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LI89_RS10325 SM01061 CAT RNA binding domain LI89_RS10340 SM00890 Domain of unknown function LI89_RS10405 SM00382 ATPases associated with a variety of cellular activities LI89_RS10405 SM00487 DEAD-like helicases superfamily LI89_RS10405 SM00490 helicase superfamily c-terminal domain LI89_RS10405 SM00847 Helicase associated domain (HA2) Add an annotation LI89_RS10415 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS10420 SM00020 Trypsin-like serine protease LI89_RS10435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS10435 SM00387 Histidine kinase-like ATPases LI89_RS10435 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS10440 SM00448 cheY-homologous receiver domain LI89_RS10440 SM00862 Transcriptional regulatory protein, C terminal LI89_RS10465 SM01002 Alanine dehydrogenase/PNT, C-terminal domain LI89_RS10465 SM01003 Alanine dehydrogenase/PNT, N-terminal domain LI89_RS10480 SM00100 Cyclic nucleotide-monophosphate binding domain LI89_RS10480 SM00419 helix_turn_helix, cAMP Regulatory protein LI89_RS10500 SM00871 Bacterial transcription activator, effector binding domain LI89_RS10510 SM00822 LI89_RS10510 LI89_RS10515 SM00098 Alkaline phosphatase homologues LI89_RS10585 SM00354 helix_turn _helix lactose operon repressor LI89_RS10610 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS10625 SM00344 helix_turn_helix ASNC type LI89_RS10640 SM00849 Metallo-beta-lactamase superfamily LI89_RS10645 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LI89_RS10645 SM00382 ATPases associated with a variety of cellular activities LI89_RS10650 SM00347 helix_turn_helix multiple antibiotic resistance protein LI89_RS10685 SM00421 helix_turn_helix, Lux Regulon LI89_RS10775 SM00421 helix_turn_helix, Lux Regulon LI89_RS10800 SM00354 helix_turn _helix lactose operon repressor LI89_RS10830 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS10840 SM00382 ATPases associated with a variety of cellular activities LI89_RS10860 SM00382 ATPases associated with a variety of cellular activities LI89_RS10900 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS10910 SM00900 LI89_RS10910 LI89_RS10920 SM00478 endonuclease III LI89_RS10920 SM00525 LI89_RS10920 LI89_RS10940 SM00357 Cold shock protein domain LI89_RS10940 SM00955 LI89_RS10940 LI89_RS10960 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_RS10960 SM01134 LI89_RS10960 LI89_RS10970 SM01007 Class II Aldolase and Adducin N-terminal domain LI89_RS10985 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LI89_RS11000 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS11010 SM00028 Tetratricopeptide repeats LI89_RS11020 SM00014 Acid phosphatase homologues LI89_RS11090 SM00857 Resolvase, N terminal domain LI89_RS11105 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LI89_RS11105 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LI89_RS11105 SM00493 LI89_RS11105 LI89_RS11120 SM00822 LI89_RS11120 LI89_RS11135 SM00363 S4 RNA-binding domain LI89_RS11145 SM00481 DNA polymerase alpha chain like domain LI89_RS11180 SM00749 bacterial OsmY and nodulation domain LI89_RS11230 SM00052 Putative diguanylate phosphodiesterase LI89_RS11235 SM00155 Phospholipase D. Active site motifs. LI89_RS11245 SM00382 ATPases associated with a variety of cellular activities LI89_RS11250 SM00382 ATPases associated with a variety of cellular activities LI89_RS11295 SM00528 Domain in histone-like proteins of HNS family LI89_RS11300 SM00984 UDP binding domain LI89_RS11305 SM00448 cheY-homologous receiver domain LI89_RS11375 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LI89_RS11375 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LI89_RS11375 SM00493 LI89_RS11375 LI89_RS11395 SM00870 LI89_RS11395 LI89_RS11415 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LI89_RS11430 SM00763 PrkA AAA domain LI89_RS11460 SM00052 Putative diguanylate phosphodiesterase LI89_RS11460 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LI89_RS11460 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_RS11460 SM00091 PAS domain LI89_RS11460 SM00267 diguanylate cyclase LI89_RS11470 SM01005 Alanine racemase, C-terminal domain LI89_RS11485 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS11550 SM00341 Helicase and RNase D C-terminal LI89_RS11550 SM00474 3'-5' exonuclease LI89_RS11570 SM00487 DEAD-like helicases superfamily LI89_RS11570 SM00491 LI89_RS11570 LI89_RS11615 SM00257 Lysin motif LI89_RS11625 SM00382 ATPases associated with a variety of cellular activities LI89_RS11640 SM00382 ATPases associated with a variety of cellular activities LI89_RS11645 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LI89_RS11705 SM00836 DALR anticodon binding domain LI89_RS11705 SM01016 Arginyl tRNA synthetase N terminal dom LI89_RS11765 SM00481 DNA polymerase alpha chain like domain LI89_RS11790 SM00267 diguanylate cyclase LI89_RS11820 SM00937 LI89_RS11820 LI89_RS11840 SM01400 LI89_RS11840 LI89_RS11875 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LI89_RS11890 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS11890 SM00895 LI89_RS11890 LI89_RS11945 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS11950 SM00382 ATPases associated with a variety of cellular activities LI89_RS12125 SM00479 LI89_RS12125 LI89_RS12140 SM01022 LI89_RS12140 LI89_RS12150 SM00487 DEAD-like helicases superfamily LI89_RS12150 SM00490 helicase superfamily c-terminal domain LI89_RS12180 SM01091 Transporter associated domain LI89_RS12215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_RS12215 SM00091 PAS domain LI89_RS12215 SM00267 diguanylate cyclase LI89_RS12240 SM00357 Cold shock protein domain LI89_RS12285 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS12310 SM00382 ATPases associated with a variety of cellular activities LI89_RS12315 SM00090 RIO-like kinase LI89_RS12330 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_RS12330 SM00091 PAS domain LI89_RS12330 SM00267 diguanylate cyclase LI89_RS12350 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS12370 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LI89_RS12375 SM00895 LI89_RS12375 LI89_RS12380 SM00829 Enoylreductase LI89_RS12390 SM00858 LI89_RS12390 LI89_RS12395 SM00382 ATPases associated with a variety of cellular activities LI89_RS12415 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS12485 SM00354 helix_turn _helix lactose operon repressor LI89_RS12490 SM00640 Glycosyl hydrolases family 32 LI89_RS12520 SM01329 LI89_RS12520 LI89_RS12555 SM00448 cheY-homologous receiver domain LI89_RS12555 SM00862 Transcriptional regulatory protein, C terminal LI89_RS12560 SM00387 Histidine kinase-like ATPases LI89_RS12560 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS12565 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. LI89_RS12595 SM00382 ATPases associated with a variety of cellular activities LI89_RS12605 SM00487 DEAD-like helicases superfamily LI89_RS12605 SM00490 helicase superfamily c-terminal domain LI89_RS12605 SM00982 LI89_RS12605 LI89_RS12605 SM01058 CarD-like/TRCF domain LI89_RS12690 SM00825 Beta-ketoacyl synthase LI89_RS12700 SM00822 LI89_RS12700 LI89_RS12705 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LI89_RS12735 SM00363 S4 RNA-binding domain LI89_RS12740 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_RS12770 SM00421 helix_turn_helix, Lux Regulon LI89_RS12780 SM00450 Rhodanese Homology Domain LI89_RS12785 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS12800 SM00387 Histidine kinase-like ATPases LI89_RS12805 SM00421 helix_turn_helix, Lux Regulon LI89_RS12805 SM00448 cheY-homologous receiver domain LI89_RS12860 SM01091 Transporter associated domain LI89_RS12875 SM00421 helix_turn_helix, Lux Regulon LI89_RS12950 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LI89_RS12955 SM00992 Hemimethylated DNA-binding protein YccV like LI89_RS12960 SM00881 CoA binding domain LI89_RS12970 SM00851 MGS-like domain LI89_RS13025 SM00825 Beta-ketoacyl synthase LI89_RS13045 SM00382 ATPases associated with a variety of cellular activities LI89_RS13050 SM00981 LI89_RS13050 LI89_RS13095 SM00052 Putative diguanylate phosphodiesterase LI89_RS13100 SM00849 Metallo-beta-lactamase superfamily LI89_RS13155 SM00357 Cold shock protein domain LI89_RS13160 SM00357 Cold shock protein domain LI89_RS13165 SM01150 LI89_RS13165 LI89_RS13175 SM00382 ATPases associated with a variety of cellular activities LI89_RS13180 SM00849 Metallo-beta-lactamase superfamily LI89_RS13185 SM00411 bacterial (prokaryotic) histone like domain LI89_RS13190 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_RS13215 SM00870 LI89_RS13215 LI89_RS13250 SM00382 ATPases associated with a variety of cellular activities LI89_RS13260 SM00843 LI89_RS13260 LI89_RS13265 SM00344 helix_turn_helix ASNC type LI89_RS13275 SM00382 ATPases associated with a variety of cellular activities LI89_RS13280 SM00382 ATPases associated with a variety of cellular activities LI89_RS13290 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_RS13295 SM00382 ATPases associated with a variety of cellular activities LI89_RS13295 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_RS13305 SM00357 Cold shock protein domain LI89_RS13310 SM00382 ATPases associated with a variety of cellular activities LI89_RS13375 SM00382 ATPases associated with a variety of cellular activities LI89_RS13380 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS13380 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LI89_RS13400 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS13400 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LI89_RS13425 SM00382 ATPases associated with a variety of cellular activities LI89_RS13460 SM00014 Acid phosphatase homologues LI89_RS13465 SM01133 LI89_RS13465 LI89_RS13470 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_RS13470 SM01134 LI89_RS13470 LI89_RS13485 SM00936 Penicillin-binding protein 5, C-terminal domain LI89_RS13490 SM00116 Domain in cystathionine beta-synthase and other proteins. LI89_RS13500 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS13515 SM00382 ATPases associated with a variety of cellular activities LI89_RS13515 SM00930 LI89_RS13515 LI89_RS13545 SM00382 ATPases associated with a variety of cellular activities LI89_RS13575 SM00518 AP endonuclease family 2 LI89_RS13600 SM00862 Transcriptional regulatory protein, C terminal LI89_RS13645 SM00841 Elongation factor P, C-terminal LI89_RS13645 SM01185 LI89_RS13645 LI89_RS13665 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS13665 SM00895 LI89_RS13665 LI89_RS13675 SM00833 Cobalamin synthesis protein cobW C-terminal domain LI89_RS13680 SM00014 Acid phosphatase homologues LI89_RS13695 SM00052 Putative diguanylate phosphodiesterase LI89_RS13715 SM00382 ATPases associated with a variety of cellular activities LI89_RS13730 SM00363 S4 RNA-binding domain LI89_RS13735 SM00487 DEAD-like helicases superfamily LI89_RS13735 SM00490 helicase superfamily c-terminal domain LI89_RS13770 SM01057 Eukaryotic-type carbonic anhydrase LI89_RS13800 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS13815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_RS13815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS13855 SM00382 ATPases associated with a variety of cellular activities LI89_RS13865 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins LI89_RS13875 SM00387 Histidine kinase-like ATPases LI89_RS13875 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS13880 SM00421 helix_turn_helix, Lux Regulon LI89_RS13880 SM00448 cheY-homologous receiver domain LI89_RS13885 SM00387 Histidine kinase-like ATPases LI89_RS13885 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS13885 SM00448 cheY-homologous receiver domain LI89_RS13890 SM00434 DNA Topoisomerase IV LI89_RS13930 SM00852 Probable molybdopterin binding domain LI89_RS13945 SM01060 LI89_RS13945 LI89_RS13955 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LI89_RS14005 SM00354 helix_turn _helix lactose operon repressor LI89_RS14080 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS14080 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LI89_RS14085 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LI89_RS14125 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_RS14165 SM00354 helix_turn _helix lactose operon repressor LI89_RS14195 SM00052 Putative diguanylate phosphodiesterase LI89_RS14205 SM00382 ATPases associated with a variety of cellular activities LI89_RS14220 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS14265 SM00859 Semialdehyde dehydrogenase, NAD binding domain LI89_RS14275 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS14290 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS14330 SM00354 helix_turn _helix lactose operon repressor LI89_RS14365 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_RS14365 SM00091 PAS domain LI89_RS14365 SM00267 diguanylate cyclase LI89_RS14370 SM00825 Beta-ketoacyl synthase LI89_RS14410 SM00463 Small MutS-related domain LI89_RS14495 SM00382 ATPases associated with a variety of cellular activities LI89_RS14540 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS14545 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LI89_RS14550 SM00421 helix_turn_helix, Lux Regulon LI89_RS14595 SM00912 haemagglutination activity domain LI89_RS14710 SM00354 helix_turn _helix lactose operon repressor LI89_RS14715 SM00867 YceI-like domain LI89_RS14745 SM00382 ATPases associated with a variety of cellular activities LI89_RS14790 SM00382 ATPases associated with a variety of cellular activities LI89_RS14815 SM01061 CAT RNA binding domain LI89_RS14845 SM00387 Histidine kinase-like ATPases LI89_RS14850 SM00448 cheY-homologous receiver domain LI89_RS14850 SM00850 LytTr DNA-binding domain LI89_RS14965 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LI89_RS14965 SM00292 breast cancer carboxy-terminal domain LI89_RS14965 SM00532 Ligase N family LI89_RS14970 SM00771 ZipA, C-terminal domain (FtsZ-binding) LI89_RS15000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS15000 SM00387 Histidine kinase-like ATPases LI89_RS15000 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS15005 SM00448 cheY-homologous receiver domain LI89_RS15005 SM00862 Transcriptional regulatory protein, C terminal LI89_RS15015 SM00382 ATPases associated with a variety of cellular activities LI89_RS15025 SM00382 ATPases associated with a variety of cellular activities LI89_RS15070 SM01130 LI89_RS15070 LI89_RS15115 SM00421 helix_turn_helix, Lux Regulon LI89_RS15120 SM00919 Malic enzyme, NAD binding domain LI89_RS15120 SM01274 LI89_RS15120 LI89_RS15140 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS15155 SM00421 helix_turn_helix, Lux Regulon LI89_RS15155 SM00448 cheY-homologous receiver domain LI89_RS15230 SM00060 Fibronectin type 3 domain LI89_RS15340 SM00857 Resolvase, N terminal domain LI89_RS15395 SM01130 LI89_RS15395 LI89_RS15465 SM00382 ATPases associated with a variety of cellular activities LI89_RS15495 SM00924 MgtE intracellular N domain LI89_RS15500 SM00052 Putative diguanylate phosphodiesterase LI89_RS15500 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_RS15500 SM00091 PAS domain LI89_RS15500 SM00267 diguanylate cyclase LI89_RS15535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS15535 SM00387 Histidine kinase-like ATPases LI89_RS15535 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS15540 SM00448 cheY-homologous receiver domain LI89_RS15540 SM00862 Transcriptional regulatory protein, C terminal LI89_RS15550 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS15565 SM00046 Diacylglycerol kinase catalytic domain (presumed) LI89_RS15595 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_RS15595 SM01134 LI89_RS15595 LI89_RS15600 SM00116 Domain in cystathionine beta-synthase and other proteins. LI89_RS15655 SM00116 Domain in cystathionine beta-synthase and other proteins. LI89_RS15655 SM01240 LI89_RS15655 LI89_RS15685 SM00564 beta-propeller repeat LI89_RS15705 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS15710 SM00028 Tetratricopeptide repeats LI89_RS15720 SM00562 LI89_RS15720 LI89_RS15725 SM00247 Beta/gamma crystallins LI89_RS15735 SM01359 LI89_RS15735 LI89_RS15735 SM01360 LI89_RS15735 LI89_RS15740 SM00869 Autotransporter beta-domain LI89_RS15745 SM00869 Autotransporter beta-domain LI89_RS15775 SM00271 DnaJ molecular chaperone homology domain LI89_RS15870 SM00938 Nitrogen regulatory protein P-II LI89_RS15880 SM00382 ATPases associated with a variety of cellular activities LI89_RS15880 SM00448 cheY-homologous receiver domain LI89_RS15890 SM00387 Histidine kinase-like ATPases LI89_RS15890 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS15900 SM01211 LI89_RS15900 LI89_RS15905 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS15970 SM00358 Double-stranded RNA binding motif LI89_RS15970 SM00535 Ribonuclease III family LI89_RS16020 SM00487 DEAD-like helicases superfamily LI89_RS16020 SM00490 helicase superfamily c-terminal domain LI89_RS16025 SM00248 ankyrin repeats LI89_RS16040 SM00986 Uracil DNA glycosylase superfamily LI89_RS16040 SM00987 UreE urease accessory protein, C-terminal domain LI89_RS16130 SM00778 Zinc-binding domain of primase-helicase LI89_RS16155 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS16200 SM00829 Enoylreductase LI89_RS16240 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS16280 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS16355 SM00988 UreE urease accessory protein, N-terminal domain LI89_RS16380 SM00382 ATPases associated with a variety of cellular activities LI89_RS16385 SM00382 ATPases associated with a variety of cellular activities LI89_RS16415 SM00450 Rhodanese Homology Domain LI89_RS16420 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS16425 SM00357 Cold shock protein domain LI89_RS16450 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS16470 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS16500 SM00382 ATPases associated with a variety of cellular activities LI89_RS16520 SM00479 LI89_RS16520 LI89_RS16535 SM00849 Metallo-beta-lactamase superfamily LI89_RS16540 SM00257 Lysin motif LI89_RS16565 SM00825 Beta-ketoacyl synthase LI89_RS16570 SM00822 LI89_RS16570 LI89_RS16580 SM00825 Beta-ketoacyl synthase LI89_RS16635 SM00563 Phosphate acyltransferases LI89_RS16685 SM00382 ATPases associated with a variety of cellular activities LI89_RS16685 SM00930 LI89_RS16685 LI89_RS16725 SM01322 LI89_RS16725 LI89_RS16745 SM00977 TilS substrate C-terminal domain LI89_RS16765 SM00481 DNA polymerase alpha chain like domain LI89_RS16795 SM00935 Outer membrane protein (OmpH-like) LI89_RS16805 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_RS16855 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_RS16900 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LI89_RS16900 SM00475 5'-3' exonuclease LI89_RS16940 SM00925 MltA specific insert domain LI89_RS16960 SM00646 LI89_RS16960 LI89_RS16970 SM00382 ATPases associated with a variety of cellular activities LI89_RS17020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LI89_RS17035 SM00927 DNA mismatch repair enzyme MutH LI89_RS17055 SM00563 Phosphate acyltransferases LI89_RS17065 SM00354 helix_turn _helix lactose operon repressor LI89_RS17090 SM00849 Metallo-beta-lactamase superfamily LI89_RS17100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_RS17100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS17100 SM00319 Homologues of the ligand binding domain of Tar LI89_RS17110 SM00862 Transcriptional regulatory protein, C terminal LI89_RS17160 SM00382 ATPases associated with a variety of cellular activities LI89_RS17180 SM00947 Carbonic anhydrase LI89_RS17190 SM00822 LI89_RS17190 LI89_RS17200 SM00271 DnaJ molecular chaperone homology domain LI89_RS17205 SM00354 helix_turn _helix lactose operon repressor LI89_RS17225 SM00344 helix_turn_helix ASNC type LI89_RS17230 SM00091 PAS domain LI89_RS17230 SM00267 diguanylate cyclase LI89_RS17250 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LI89_RS17310 SM00778 Zinc-binding domain of primase-helicase LI89_RS17395 SM00937 LI89_RS17395 LI89_RS17425 SM00387 Histidine kinase-like ATPases LI89_RS17425 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS17430 SM00448 cheY-homologous receiver domain LI89_RS17430 SM00862 Transcriptional regulatory protein, C terminal LI89_RS17460 SM00822 LI89_RS17460 LI89_RS17495 SM01011 Aminopeptidase P, N-terminal domain LI89_RS17560 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LI89_RS17565 SM00861 Transketolase, pyrimidine binding domain LI89_RS17600 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LI89_RS17605 SM00731 SprT homologues. LI89_RS17630 SM00732 Likely ribonuclease with RNase H fold. LI89_RS17665 SM01152 LI89_RS17665 LI89_RS17675 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_RS17700 SM00478 endonuclease III LI89_RS17700 SM00525 LI89_RS17700 LI89_RS17735 SM00448 cheY-homologous receiver domain LI89_RS17735 SM00862 Transcriptional regulatory protein, C terminal LI89_RS17745 SM00387 Histidine kinase-like ATPases LI89_RS17745 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS17750 SM00421 helix_turn_helix, Lux Regulon LI89_RS17815 SM00382 ATPases associated with a variety of cellular activities LI89_RS17850 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS17865 SM00354 helix_turn _helix lactose operon repressor LI89_RS17900 SM00421 helix_turn_helix, Lux Regulon LI89_RS17915 SM00052 Putative diguanylate phosphodiesterase LI89_RS17915 SM00091 PAS domain LI89_RS17915 SM00267 diguanylate cyclase LI89_RS18015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_RS18045 SM00382 ATPases associated with a variety of cellular activities LI89_RS18180 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS18195 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_RS18210 SM00563 Phosphate acyltransferases LI89_RS18215 SM00434 DNA Topoisomerase IV LI89_RS18235 SM00387 Histidine kinase-like ATPases LI89_RS18235 SM00433 TopoisomeraseII LI89_RS18305 SM01118 LI89_RS18305 LI89_RS18310 SM00287 Bacterial SH3 domain homologues LI89_RS18315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_RS18325 SM00905 Dihydroneopterin aldolase LI89_RS18330 SM01207 LI89_RS18330 LI89_RS18345 SM00400 zinc finger LI89_RS18345 SM00493 LI89_RS18345 LI89_RS18345 SM00766 DNA primase DnaG DnaB-binding LI89_RS18425 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_RS18475 SM00382 ATPases associated with a variety of cellular activities LI89_RS18485 SM00382 ATPases associated with a variety of cellular activities LI89_RS18485 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_RS18635 SM00869 Autotransporter beta-domain LI89_RS18665 SM00858 LI89_RS18665 LI89_RS18685 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS18685 SM00895 LI89_RS18685 LI89_RS18745 SM00829 Enoylreductase LI89_RS18760 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS18780 SM00857 Resolvase, N terminal domain LI89_RS18835 SM00749 bacterial OsmY and nodulation domain LI89_RS18850 SM00073 Histidine Phosphotransfer domain LI89_RS18850 SM00091 PAS domain LI89_RS18850 SM00387 Histidine kinase-like ATPases LI89_RS18850 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS18850 SM00448 cheY-homologous receiver domain LI89_RS18855 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_RS18905 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_RS18910 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_RS18945 SM00382 ATPases associated with a variety of cellular activities LI89_RS18975 SM00382 ATPases associated with a variety of cellular activities LI89_RS19035 SM00460 Transglutaminase/protease-like homologues LI89_RS19045 SM00642 Alpha-amylase domain LI89_RS19055 SM00354 helix_turn _helix lactose operon repressor LI89_RS19060 SM00831 Cation transporter/ATPase, N-terminus LI89_RS19070 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS19230 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_RS19255 SM00052 Putative diguanylate phosphodiesterase LI89_RS19255 SM00267 diguanylate cyclase LI89_RS19260 SM00829 Enoylreductase LI89_RS19285 SM00878 Biotin carboxylase C-terminal domain LI89_RS19335 SM00507 HNH nucleases LI89_RS19370 SM00778 Zinc-binding domain of primase-helicase LI89_RS19370 SM00885 D5 N terminal like LI89_RS19415 SM00267 diguanylate cyclase LI89_RS19425 SM00357 Cold shock protein domain LI89_RS19430 SM00357 Cold shock protein domain LI89_RS19435 SM00357 Cold shock protein domain LI89_RS19455 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS19470 SM00382 ATPases associated with a variety of cellular activities LI89_RS19525 SM01005 Alanine racemase, C-terminal domain LI89_RS19530 SM00382 ATPases associated with a variety of cellular activities LI89_RS19535 SM00829 Enoylreductase LI89_RS19575 SM00563 Phosphate acyltransferases LI89_RS19600 SM00382 ATPases associated with a variety of cellular activities LI89_RS19645 SM00912 haemagglutination activity domain LI89_RS19650 SM01018 B12 binding domain LI89_RS19655 SM00346 helix_turn_helix isocitrate lyase regulation LI89_RS19760 SM00422 helix_turn_helix, mercury resistance LI89_RS19775 SM00662 RNA polymerases D LI89_RS19780 SM00363 S4 RNA-binding domain LI89_RS19780 SM01390 LI89_RS19780 LI89_RS19845 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LI89_RS19850 SM01374 LI89_RS19850 LI89_RS19870 SM00322 K homology RNA-binding domain LI89_RS19885 SM01382 LI89_RS19885 LI89_RS19885 SM01383 LI89_RS19885 LI89_RS19905 SM01403 LI89_RS19905 LI89_RS19925 SM00838 Elongation factor G C-terminus LI89_RS19925 SM00889 Elongation factor G, domain IV LI89_RS19990 SM00382 ATPases associated with a variety of cellular activities LI89_RS20015 SM00382 ATPases associated with a variety of cellular activities LI89_RS20020 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS20055 SM00100 Cyclic nucleotide-monophosphate binding domain LI89_RS20055 SM00419 helix_turn_helix, cAMP Regulatory protein LI89_RS20090 SM00354 helix_turn _helix lactose operon repressor LI89_RS20205 SM00363 S4 RNA-binding domain LI89_RS20220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS20220 SM00387 Histidine kinase-like ATPases LI89_RS20220 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS20225 SM00448 cheY-homologous receiver domain LI89_RS20225 SM00862 Transcriptional regulatory protein, C terminal LI89_RS20235 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_RS20235 SM00732 Likely ribonuclease with RNase H fold. LI89_RS20240 SM00899 LI89_RS20240 LI89_RS20285 SM00421 helix_turn_helix, Lux Regulon LI89_RS20295 SM00450 Rhodanese Homology Domain LI89_RS20305 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_RS20305 SM01134 LI89_RS20305 LI89_RS20330 SM00642 Alpha-amylase domain LI89_RS20335 SM00642 Alpha-amylase domain LI89_RS20360 SM00859 Semialdehyde dehydrogenase, NAD binding domain LI89_RS20380 SM00354 helix_turn _helix lactose operon repressor LI89_RS20535 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LI89_RS20540 SM00235 Zinc-dependent metalloprotease LI89_RS20590 SM00382 ATPases associated with a variety of cellular activities LI89_RS20660 SM00530 Helix-turn-helix XRE-family like proteins LI89_RS20665 SM00829 Enoylreductase LI89_RS20670 SM00869 Autotransporter beta-domain LI89_RS20690 SM00052 Putative diguanylate phosphodiesterase LI89_RS20730 SM00052 Putative diguanylate phosphodiesterase LI89_RS20735 SM00028 Tetratricopeptide repeats LI89_RS20785 SM00382 ATPases associated with a variety of cellular activities LI89_RS20790 SM00382 ATPases associated with a variety of cellular activities LI89_RS20810 SM00912 haemagglutination activity domain LI89_RS20820 SM00912 haemagglutination activity domain LI89_RS20835 SM00387 Histidine kinase-like ATPases LI89_RS20840 SM00421 helix_turn_helix, Lux Regulon LI89_RS20840 SM00448 cheY-homologous receiver domain LI89_RS20935 SM00354 helix_turn _helix lactose operon repressor LI89_RS20945 SM00778 Zinc-binding domain of primase-helicase LI89_RS20945 SM00885 D5 N terminal like LI89_RS20995 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS21005 SM00382 ATPases associated with a variety of cellular activities LI89_RS21035 SM00342 helix_turn_helix, arabinose operon control protein LI89_RS21080 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_RS21095 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_RS21095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS21095 SM01358 LI89_RS21095 LI89_RS21110 SM00966 SpoVT / AbrB like domain LI89_RS21120 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_RS21200 SM00642 Alpha-amylase domain LI89_RS21255 SM00387 Histidine kinase-like ATPases LI89_RS21255 SM00433 TopoisomeraseII LI89_RS21265 SM00480 DNA polymerase III beta subunit LI89_RS21270 SM00382 ATPases associated with a variety of cellular activities LI89_RS21270 SM00760 Bacterial dnaA protein helix-turn-helix domain LI89_RS21285 SM01234 LI89_RS21285 LI89_RS21310 SM00382 ATPases associated with a variety of cellular activities LI89_RS21310 SM00930 LI89_RS21310 LI89_RS21320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_RS21320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_RS21330 SM00387 Histidine kinase-like ATPases LI89_RS21330 SM00388 His Kinase A (phosphoacceptor) domain LI89_RS21335 SM00421 helix_turn_helix, Lux Regulon LI89_RS21335 SM00448 cheY-homologous receiver domain LI89_RS21365 SM00062 Bacterial periplasmic substrate-binding proteins LI89_RS21380 SM00382 ATPases associated with a variety of cellular activities LI89_RS21415 SM00382 ATPases associated with a variety of cellular activities LI89_RS21460 SM01228 LI89_RS21460