YE0001 PF00258 Flavodoxin YE0002 PF01037 AsnC family YE0002 PF13404 AsnC-type helix-turn-helix domain YE0003 PF03590 Aspartate-ammonia ligase YE0004 PF07077 YE0004 YE0005 PF05762 VWA domain containing CoxE-like protein YE0006 PF07728 AAA domain (dynein-related subfamily) YE0006 PF12592 Protein of unknown function (DUF3763) YE0007 PF02705 YE0007 YE0008 PF05025 RbsD / FucU transport protein family YE0009 PF00005 ABC transporter YE0010 PF02653 YE0010 YE0011 PF13407 Periplasmic binding protein domain YE0012 PF00294 pfkB family carbohydrate kinase YE0012A PF00356 Bacterial regulatory proteins, lacI family YE0012A PF13377 Periplasmic binding protein-like domain YE0013 PF07690 Major Facilitator Superfamily YE0014 PF00392 Bacterial regulatory proteins, gntR family YE0014 PF07729 FCD domain YE0016 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YE0017 PF12804 MobA-like NTP transferase domain YE0018 PF06288 Protein of unknown function (DUF1040) YE0019 PF01636 Phosphotransferase enzyme family YE0020 PF01323 DSBA-like thioredoxin domain YE0021 PF00476 DNA polymerase family A YE0021 PF01367 5'-3' exonuclease, C-terminal SAM fold YE0021 PF01612 3'-5' exonuclease YE0021 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YE0022 PF01926 50S ribosome-binding GTPase YE0023 PF04220 YE0023 YE0024 PF04055 Radical SAM superfamily YE0024 PF06969 HemN C-terminal domain YE0025 PF00072 Response regulator receiver domain YE0025 PF00158 Sigma-54 interaction domain YE0025 PF02954 Bacterial regulatory protein, Fis family YE0026 PF00512 His Kinase A (phospho-acceptor) domain YE0026 PF00989 PAS fold YE0026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE0027 PF00120 Glutamine synthetase, catalytic domain YE0027 PF03951 Glutamine synthetase, beta-Grasp domain YE0029 PF00009 Elongation factor Tu GTP binding domain YE0029 PF00679 Elongation factor G C-terminus YE0029 PF03144 Elongation factor Tu domain 2 YE0030 PF13419 Haloacid dehalogenase-like hydrolase YE0031 PF03631 YE0031 YE0032 PF02580 D-Tyr-tRNA(Tyr) deacylase YE0033 PF00583 Acetyltransferase (GNAT) family YE0033 PF09500 Putative thioesterase (yiiD_Cterm) YE0035 PF00196 Bacterial regulatory proteins, luxR family YE0035 PF08448 PAS fold YE0036 PF00196 Bacterial regulatory proteins, luxR family YE0037 PF00196 Bacterial regulatory proteins, luxR family YE0037 PF08448 PAS fold YE0038 PF00196 Bacterial regulatory proteins, luxR family YE0038 PF08448 PAS fold YE0039 PF00196 Bacterial regulatory proteins, luxR family YE0039 PF08448 PAS fold YE0041 PF00860 Permease family YE0042 PF03616 YE0042 YE0043 PF00270 DEAD/DEAH box helicase YE0043 PF00271 Helicase conserved C-terminal domain YE0043 PF17191 YE0043 YE0044 PF00588 SpoU rRNA Methylase family YE0044 PF12105 SpoU, rRNA methylase, C-terminal YE0045 PF02824 TGS domain YE0045 PF04607 Region found in RelA / SpoT proteins YE0045 PF13291 ACT domain YE0045 PF13328 HD domain YE0046 PF01192 RNA polymerase Rpb6 YE0047 PF00625 Guanylate kinase YE0048 PF01653 NAD-dependent DNA ligase adenylation domain YE0048 PF03120 NAD-dependent DNA ligase OB-fold domain YE0049 PF03458 YE0049 YE0050 PF12098 YE0050 YE0051 PF01773 Na+ dependent nucleoside transporter N-terminus YE0051 PF07662 Na+ dependent nucleoside transporter C-terminus YE0052 PF00378 Enoyl-CoA hydratase/isomerase family YE0053 PF00563 EAL domain YE0053 PF00990 GGDEF domain YE0053 PF13426 PAS domain YE0055 PF00753 Metallo-beta-lactamase superfamily YE0057 PF03755 YE0057 YE0057 PF08340 YE0057 YE0058 PF01138 3' exoribonuclease family, domain 1 YE0058 PF03725 3' exoribonuclease family, domain 2 YE0059 PF00156 Phosphoribosyl transferase domain YE0060 PF00440 Bacterial regulatory proteins, tetR family YE0061 PF00692 dUTPase YE0062 PF02441 Flavoprotein YE0062 PF04127 DNA / pantothenate metabolism flavoprotein YE0063 PF04002 RadC-like JAB domain YE0064 PF00830 Ribosomal L28 family YE0065 PF00471 Ribosomal protein L33 YE0066 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YE0066 PF06827 Zinc finger found in FPG and IleRS YE0066 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YE0067 PF01467 Cytidylyltransferase YE0068 PF00535 Glycosyl transferase family 2 YE0069 PF00534 Glycosyl transferases group 1 YE0069 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YE0070 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YE0071 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YE0072 PF01370 NAD dependent epimerase/dehydratase family YE0073 PF00155 Aminotransferase class I and II YE0074 PF00107 Zinc-binding dehydrogenase YE0074 PF08240 Alcohol dehydrogenase GroES-like domain YE0075 PF04748 Divergent polysaccharide deacetylase YE0076 PF01551 Peptidase family M23 YE0077 PF01676 Metalloenzyme superfamily YE0077 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YE0078 PF00581 Rhodanese-like domain YE0079 PF00462 Glutaredoxin YE0080 PF02556 Preprotein translocase subunit SecB YE0081 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YE0081 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YE0082 PF00132 Bacterial transferase hexapeptide (six repeats) YE0082 PF06426 Serine acetyltransferase, N-terminal YE0083 PF00588 SpoU rRNA Methylase family YE0084 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YE0084 PF02805 Metal binding domain of Ada YE0084 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YE0084 PF12833 Helix-turn-helix domain YE0085 PF00512 His Kinase A (phospho-acceptor) domain YE0085 PF00672 HAMP domain YE0085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE0085 PF16527 YE0085 YE0086 PF00072 Response regulator receiver domain YE0086 PF00486 Transcriptional regulatory protein, C terminal YE0087 PF07813 LTXXQ motif family protein YE0088 PF01545 Cation efflux family YE0088 PF16916 YE0088 YE0089 PF00365 Phosphofructokinase YE0090 PF01609 Transposase DDE domain YE0090 PF13006 YE0090 YE0091 PF13531 Bacterial extracellular solute-binding protein YE0093 PF00121 Triosephosphate isomerase YE0094 PF07305 YE0094 YE0095 PF05656 YE0095 YE0096 PF00175 Oxidoreductase NAD-binding domain YE0096 PF00970 Oxidoreductase FAD-binding domain YE0097 PF07690 Major Facilitator Superfamily YE0098 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YE0099 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YE0099 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YE0100 PF00230 Major intrinsic protein YE0101 PF06005 Protein of unknown function (DUF904) YE0102 PF03737 Demethylmenaquinone methyltransferase YE0103 PF01040 UbiA prenyltransferase family YE0104 PF00004 ATPase family associated with various cellular activities (AAA) YE0104 PF07724 AAA domain (Cdc48 subfamily) YE0104 PF10431 C-terminal, D2-small domain, of ClpB protein YE0105 PF00227 Proteasome subunit YE0106 PF05036 Sporulation related domain YE0107 PF00356 Bacterial regulatory proteins, lacI family YE0107 PF13377 Periplasmic binding protein-like domain YE0108 PF00270 DEAD/DEAH box helicase YE0108 PF00271 Helicase conserved C-terminal domain YE0109 PF01197 Ribosomal protein L31 YE0110 PF01340 Met Apo-repressor, MetJ YE0111 PF01053 Cys/Met metabolism PLP-dependent enzyme YE0112 PF00696 Amino acid kinase family YE0112 PF00742 Homoserine dehydrogenase YE0112 PF03447 Homoserine dehydrogenase, NAD binding domain YE0114 PF02219 Methylenetetrahydrofolate reductase YE0115 PF01129 NAD:arginine ADP-ribosyltransferase YE0116 PF00311 Phosphoenolpyruvate carboxylase YE0117 PF01546 Peptidase family M20/M25/M40 YE0117 PF07687 Peptidase dimerisation domain YE0119 PF01118 Semialdehyde dehydrogenase, NAD binding domain YE0119 PF02774 Semialdehyde dehydrogenase, dimerisation domain YE0120 PF00696 Amino acid kinase family YE0121 PF00206 Lyase YE0121 PF14698 Argininosuccinate lyase C-terminal YE0122 PF00593 TonB dependent receptor YE0122 PF07715 TonB-dependent Receptor Plug Domain YE0123 PF06438 Heme-binding protein A (HasA) YE0124 PF06438 Heme-binding protein A (HasA) YE0125 PF06438 Heme-binding protein A (HasA) YE0126 PF06438 Heme-binding protein A (HasA) YE0127 PF00005 ABC transporter YE0127 PF00664 ABC transporter transmembrane region YE0128 PF13437 HlyD family secretion protein YE0128 PF13533 Biotin-lipoyl like YE0129 PF03544 Gram-negative bacterial TonB protein C-terminal YE0130 PF01609 Transposase DDE domain YE0131 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YE0131 PF07992 Pyridine nucleotide-disulphide oxidoreductase YE0132 PF00462 Glutaredoxin YE0132 PF08534 Redoxin YE0133 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE0133 PF03466 LysR substrate binding domain YE0134 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YE0134 PF07992 Pyridine nucleotide-disulphide oxidoreductase YE0135 PF00440 Bacterial regulatory proteins, tetR family YE0136 PF07226 YE0136 YE0138 PF05958 tRNA (Uracil-5-)-methyltransferase YE0139 PF00593 TonB dependent receptor YE0139 PF07715 TonB-dependent Receptor Plug Domain YE0140 PF01177 Asp/Glu/Hydantoin racemase YE0141 PF13407 Periplasmic binding protein domain YE0142 PF00005 ABC transporter YE0143 PF02653 YE0143 YE0144 PF02653 YE0144 YE0145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE0145 PF03466 LysR substrate binding domain YE0146 PF04219 YE0146 YE0147 PF01078 Magnesium chelatase, subunit ChlI YE0147 PF13335 YE0147 YE0147 PF13541 Subunit ChlI of Mg-chelatase YE0148 PF00205 Thiamine pyrophosphate enzyme, central domain YE0148 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YE0148 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YE0149 PF13710 ACT domain YE0150 PF01063 Aminotransferase class IV YE0151 PF00920 Dehydratase family YE0152 PF00291 Pyridoxal-phosphate dependent enzyme YE0152 PF00585 C-terminal regulatory domain of Threonine dehydratase YE0154 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE0154 PF03466 LysR substrate binding domain YE0155 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YE0155 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain YE0157 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YE0157 PF02753 Pili assembly chaperone PapD, C-terminal domain YE0158 PF00419 Fimbrial protein YE0159 PF00577 Outer membrane usher protein YE0159 PF13953 PapC C-terminal domain YE0159 PF13954 PapC N-terminal domain YE0160 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YE0160 PF02753 Pili assembly chaperone PapD, C-terminal domain YE0161 PF16970 YE0161 YE0162 PF13616 PPIC-type PPIASE domain YE0163 PF00580 UvrD/REP helicase N-terminal domain YE0163 PF13361 UvrD-like helicase C-terminal domain YE0164 PF00295 Glycosyl hydrolases family 28 YE0164 PF12708 Pectate lyase superfamily protein YE0165 PF02541 Ppx/GppA phosphatase family YE0166 PF00270 DEAD/DEAH box helicase YE0166 PF00271 Helicase conserved C-terminal domain YE0167 PF00085 Thioredoxin YE0168 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YE0168 PF07497 Rho termination factor, RNA-binding domain YE0168 PF07498 Rho termination factor, N-terminal domain YE0169 PF00953 Glycosyl transferase family 4 YE0170 PF02706 Chain length determinant protein YE0171 PF02350 UDP-N-acetylglucosamine 2-epimerase YE0172 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YE0172 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YE0172 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YE0173 PF16363 YE0173 YE0174 PF00483 Nucleotidyl transferase YE0175 PF00583 Acetyltransferase (GNAT) family YE0176 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YE0177 PF01943 YE0177 YE0178 PF07429 YE0178 YE0179 PF06899 YE0179 YE0180 PF03808 YE0180 YE0181 PF00324 Amino acid permease YE0184 PF07219 YE0184 YE0185 PF04375 YE0185 YE0186 PF02602 Uroporphyrinogen-III synthase HemD YE0187 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YE0187 PF03900 Porphobilinogen deaminase, C-terminal domain YE0189 PF01295 YE0189 YE0189 PF12633 YE0189 YE0190 PF01491 Frataxin-like domain YE0191 PF13627 YE0191 YE0192 PF01678 Diaminopimelate epimerase YE0193 PF04340 Protein of unknown function, DUF484 YE0194 PF00589 Phage integrase family YE0194 PF02899 Phage integrase, N-terminal SAM-like domain YE0195 PF13419 Haloacid dehalogenase-like hydrolase YE0196 PF00580 UvrD/REP helicase N-terminal domain YE0196 PF13361 UvrD-like helicase C-terminal domain YE0198 PF06792 Uncharacterised protein family (UPF0261) YE0199 PF09370 TIM-barrel signal transduction protein YE0200 PF01544 CorA-like Mg2+ transporter protein YE0201 PF00892 EamA-like transporter family YE0202 PF03061 Thioesterase superfamily YE0203 PF02253 Phospholipase A1 YE0204 PF00270 DEAD/DEAH box helicase YE0204 PF00271 Helicase conserved C-terminal domain YE0204 PF00570 HRDC domain YE0204 PF09382 RQC domain YE0204 PF16124 YE0204 YE0205 PF01810 YE0205 YE0206 PF01810 YE0206 YE0207 PF12146 Putative lysophospholipase YE0208 PF08282 haloacid dehalogenase-like hydrolase YE0209 PF03009 Glycerophosphoryl diester phosphodiesterase family YE0210 PF07690 Major Facilitator Superfamily YE0212 PF01266 FAD dependent oxidoreductase YE0212 PF04324 BFD-like [2Fe-2S] binding domain YE0213 PF00890 FAD binding domain YE0214 PF02754 YE0214 YE0214 PF13183 4Fe-4S dicluster domain YE0215 PF08786 Domain of unknown function (DUF1795) YE0216 PF02592 YE0216 YE0217 PF01206 Sulfurtransferase TusA YE0218 PF00122 E1-E2 ATPase YE0218 PF00403 Heavy-metal-associated domain YE0218 PF00702 haloacid dehalogenase-like hydrolase YE0219 PF07947 YE0219 YE0221 PF08850 YE0221 YE0222 PF10694 Protein of unknown function (DUF2500) YE0223 PF06611 YE0223 YE0224 PF03602 Conserved hypothetical protein 95 YE0225 PF00448 SRP54-type protein, GTPase domain YE0225 PF02881 SRP54-type protein, helical bundle domain YE0226 PF00005 ABC transporter YE0227 PF02687 YE0227 YE0228 PF00140 Sigma-70 factor, region 1 YE0228 PF04542 Sigma-70 region 2 YE0228 PF04545 Sigma-70, region 4 YE0229 PF12568 Acetyltransferase (GNAT) domain YE0230 PF13458 Periplasmic binding protein YE0231 PF02653 YE0231 YE0232 PF02653 YE0232 YE0232 PF11862 YE0232 YE0233 PF00005 ABC transporter YE0233 PF12399 Branched-chain amino acid ATP-binding cassette transporter YE0234 PF00005 ABC transporter YE0239 PF16967 YE0239 YE0240 PF04449 CS1 type fimbrial major subunit YE0241 PF13416 Bacterial extracellular solute-binding protein YE0242 PF00528 Binding-protein-dependent transport system inner membrane component YE0243 PF00528 Binding-protein-dependent transport system inner membrane component YE0244 PF00005 ABC transporter YE0244 PF08402 TOBE domain YE0245 PF03009 Glycerophosphoryl diester phosphodiesterase family YE0246 PF03547 YE0246 YE0247 PF00892 EamA-like transporter family YE0248 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE0248 PF03466 LysR substrate binding domain YE0249 PF01717 Cobalamin-independent synthase, Catalytic domain YE0249 PF08267 Cobalamin-independent synthase, N-terminal domain YE0250 PF01738 Dienelactone hydrolase family YE0251 PF01048 Phosphorylase superfamily YE0252 PF13350 Tyrosine phosphatase family YE0253 PF02554 YE0253 YE0253 PF13722 YE0253 YE0254 PF09335 YE0254 YE0255 PF02646 YE0255 YE0256 PF01209 ubiE/COQ5 methyltransferase family YE0257 PF02036 SCP-2 sterol transfer family YE0258 PF03109 YE0258 YE0259 PF02416 mttA/Hcf106 family YE0261 PF00902 Sec-independent protein translocase protein (TatC) YE0262 PF01026 TatD related DNase YE0263 PF00490 Delta-aminolevulinic acid dehydratase YE0264 PF02357 Transcription termination factor nusG YE0265 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YE0266 PF00175 Oxidoreductase NAD-binding domain YE0266 PF00970 Oxidoreductase FAD-binding domain YE0267 PF00108 Thiolase, N-terminal domain YE0267 PF02803 Thiolase, C-terminal domain YE0268 PF00378 Enoyl-CoA hydratase/isomerase family YE0268 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YE0268 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YE0269 PF00557 Metallopeptidase family M24 YE0272 PF02386 Cation transport protein YE0273 PF12724 Flavodoxin domain YE0274 PF01565 FAD binding domain YE0274 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YE0275 PF02237 Biotin protein ligase C terminal domain YE0275 PF03099 Biotin/lipoate A/B protein ligase family YE0275 PF08279 HTH domain YE0276 PF00485 Phosphoribulokinase / Uridine kinase family YE0277 PF13673 Acetyltransferase (GNAT) domain YE0278 PF00009 Elongation factor Tu GTP binding domain YE0278 PF03143 Elongation factor Tu C-terminal domain YE0278 PF03144 Elongation factor Tu domain 2 YE0279 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YE0280 PF00467 KOW motif YE0280 PF02357 Transcription termination factor nusG YE0281 PF00298 Ribosomal protein L11, RNA binding domain YE0281 PF03946 Ribosomal protein L11, N-terminal domain YE0282 PF00687 Ribosomal protein L1p/L10e family YE0283 PF00466 Ribosomal protein L10 YE0284 PF00542 Ribosomal protein L7/L12 C-terminal domain YE0284 PF16320 YE0284 YE0286 PF00562 RNA polymerase Rpb2, domain 6 YE0286 PF04560 RNA polymerase Rpb2, domain 7 YE0286 PF04561 RNA polymerase Rpb2, domain 2 YE0286 PF04563 RNA polymerase beta subunit YE0286 PF04565 RNA polymerase Rpb2, domain 3 YE0286 PF10385 RNA polymerase beta subunit external 1 domain YE0287 PF00623 RNA polymerase Rpb1, domain 2 YE0287 PF04983 RNA polymerase Rpb1, domain 3 YE0287 PF04997 RNA polymerase Rpb1, domain 1 YE0287 PF04998 RNA polymerase Rpb1, domain 5 YE0287 PF05000 RNA polymerase Rpb1, domain 4 YE0288 PF01609 Transposase DDE domain YE0288 PF13006 YE0288 YE0289 PF04055 Radical SAM superfamily YE0289 PF06968 Biotin and Thiamin Synthesis associated domain YE0290 PF05690 Thiazole biosynthesis protein ThiG YE0290A PF02597 ThiS family YE0291 PF00899 ThiF family YE0292 PF02581 Thiamine monophosphate synthase/TENI YE0293 PF01964 ThiC family YE0293 PF13667 ThiC-associated domain YE0295 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YE0296 PF00293 NUDIX domain YE0296 PF09297 NADH pyrophosphatase zinc ribbon domain YE0297 PF01208 Uroporphyrinogen decarboxylase (URO-D) YE0298 PF04493 Endonuclease V YE0299 PF04222 Protein of unknown function (DUF416) YE0300 PF00216 Bacterial DNA-binding protein YE0301 PF07356 YE0301 YE0301 PF08139 YE0301 YE0302 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YE0302 PF02843 Phosphoribosylglycinamide synthetase, C domain YE0302 PF02844 Phosphoribosylglycinamide synthetase, N domain YE0303 PF01808 AICARFT/IMPCHase bienzyme YE0303 PF02142 MGS-like domain YE0304 PF13518 Helix-turn-helix domain YE0305 PF00665 Integrase core domain YE0306 PF12715 Abhydrolase family YE0307 PF00474 Sodium:solute symporter family YE0308 PF04341 YE0308 YE0309 PF00501 AMP-binding enzyme YE0309 PF13193 AMP-binding enzyme C-terminal domain YE0309 PF16177 YE0309 YE0310 PF00375 Sodium:dicarboxylate symporter family YE0311 PF00072 Response regulator receiver domain YE0311 PF00196 Bacterial regulatory proteins, luxR family YE0312 PF12833 Helix-turn-helix domain YE0313 PF04143 YE0313 YE0314 PF01206 Sulfurtransferase TusA YE0315 PF03544 Gram-negative bacterial TonB protein C-terminal YE0316 PF04542 Sigma-70 region 2 YE0316 PF08281 Sigma-70, region 4 YE0317 PF04773 FecR protein YE0317 PF16220 YE0317 YE0318 PF07660 Secretin and TonB N terminus short domain YE0318 PF07715 TonB-dependent Receptor Plug Domain YE0319 PF00005 ABC transporter YE0319 PF06472 YE0319 YE0320 PF00675 Insulinase (Peptidase family M16) YE0320 PF05193 Peptidase M16 inactive domain YE0321 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system YE0322 PF00924 Mechanosensitive ion channel YE0322 PF12607 YE0322 YE0323 PF00593 TonB dependent receptor YE0323 PF07715 TonB-dependent Receptor Plug Domain YE0324 PF00155 Aminotransferase class I and II YE0324 PF00392 Bacterial regulatory proteins, gntR family YE0327 PF00005 ABC transporter YE0328 PF01032 FecCD transport family YE0329 PF01497 Periplasmic binding protein YE0330 PF05171 Haemin-degrading HemS YE0331 PF00593 TonB dependent receptor YE0331 PF07715 TonB-dependent Receptor Plug Domain YE0332 PF10636 Hemin uptake protein hemP YE0333 PF13460 NADH(P)-binding YE0334 PF06228 Haem utilisation ChuX/HutX YE0335 PF04055 Radical SAM superfamily YE0336 PF00291 Pyridoxal-phosphate dependent enzyme YE0337 PF01490 YE0337 YE0338 PF00871 Acetokinase family YE0339 PF01228 Glycine radical YE0339 PF02901 Pyruvate formate lyase YE0340 PF03992 Antibiotic biosynthesis monooxygenase YE0341 PF13561 Enoyl-(Acyl carrier protein) reductase YE0342 PF00248 Aldo/keto reductase family YE0343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE0343 PF03466 LysR substrate binding domain YE0344 PF13437 HlyD family secretion protein YE0346 PF00440 Bacterial regulatory proteins, tetR family YE0347 PF02595 Glycerate kinase family YE0348 PF02683 YE0348 YE0348 PF11412 Disulphide bond corrector protein DsbC YE0348 PF13899 Thioredoxin-like YE0349 PF03091 CutA1 divalent ion tolerance protein YE0350 PF03605 YE0350 YE0351 PF00206 Lyase YE0351 PF10415 Fumarase C C-terminus YE0352 PF04186 YE0352 YE0353 PF00166 Chaperonin 10 Kd subunit YE0354 PF00118 TCP-1/cpn60 chaperonin family YE0355 PF13698 YE0355 YE0356 PF04055 Radical SAM superfamily YE0356 PF13353 4Fe-4S single cluster domain YE0357 PF01132 Elongation factor P (EF-P) OB domain YE0357 PF08207 Elongation factor P (EF-P) KOW-like domain YE0357 PF09285 Elongation factor P, C-terminal YE0358 PF08085 YE0358 YE0359 PF00893 Small Multidrug Resistance protein YE0360 PF08212 Lipocalin-like domain YE0361 PF02313 Fumarate reductase subunit D YE0362 PF02300 Fumarate reductase subunit C YE0363 PF13085 2Fe-2S iron-sulfur cluster binding domain YE0363 PF13183 4Fe-4S dicluster domain YE0364 PF00890 FAD binding domain YE0364 PF02910 Fumarate reductase flavoprotein C-term YE0365 PF00152 tRNA synthetases class II (D, K and N) YE0366 PF00924 Mechanosensitive ion channel YE0366 PF12794 YE0366 YE0366 PF12795 YE0366 YE0367 PF02666 YE0367 YE0368 PF03193 Protein of unknown function, DUF258 YE0369 PF00929 Exonuclease YE0371 PF08331 YE0371 YE0371 PF13484 YE0371 YE0372 PF01256 Carbohydrate kinase YE0372 PF03853 YjeF-related protein N-terminus YE0373 PF02367 Uncharacterised P-loop hydrolase UPF0079 YE0374 PF01476 LysM domain YE0374 PF01520 N-acetylmuramoyl-L-alanine amidase YE0374 PF11741 AMIN domain YE0375 PF01119 DNA mismatch repair protein, C-terminal domain YE0375 PF08676 MutL C terminal dimerisation domain YE0375 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE0376 PF01715 IPP transferase YE0378 PF01926 50S ribosome-binding GTPase YE0378 PF13167 YE0378 YE0378 PF16360 YE0378 YE0379 PF01145 SPFH domain / Band 7 family YE0379 PF12221 YE0379 YE0380 PF01145 SPFH domain / Band 7 family YE0381 PF09838 YE0381 YE0382 PF00709 Adenylosuccinate synthetase YE0383 PF02082 Transcriptional regulator YE0384 PF00575 S1 RNA binding domain YE0384 PF00773 RNB domain YE0384 PF08206 Ribonuclease B OB domain YE0384 PF08461 Ribonuclease R winged-helix domain YE0385 PF00588 SpoU rRNA Methylase family YE0385 PF08032 RNA 2'-O ribose methyltransferase substrate binding YE0386 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YE0386 PF02770 Acyl-CoA dehydrogenase, middle domain YE0387 PF07338 Protein of unknown function (DUF1471) YE0388 PF00326 Prolyl oligopeptidase family YE0389 PF07338 Protein of unknown function (DUF1471) YE0392 PF01250 Ribosomal protein S6 YE0393 PF00436 Single-strand binding protein family YE0394 PF01084 Ribosomal protein S18 YE0395 PF01281 Ribosomal protein L9, N-terminal domain YE0395 PF03948 Ribosomal protein L9, C-terminal domain YE0396 PF12582 YE0396 YE0397 PF04225 Opacity-associated protein A LysM-like domain YE0397 PF08525 YE0397 YE0398 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YE0398 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YE0399 PF00149 Calcineurin-like phosphoesterase YE0399 PF02872 5'-nucleotidase, C-terminal domain YE0400 PF00459 Inositol monophosphatase family YE0401 PF09695 YE0401 YE0402 PF06526 Protein of unknown function (DUF1107) YE0403 PF00571 CBS domain YE0403 PF01595 YE0403 YE0403 PF03471 Transporter associated domain YE0404 PF01625 Peptide methionine sulfoxide reductase YE0405 PF01103 Surface antigen YE0405 PF07244 Surface antigen variable number repeat YE0406 PF04357 YE0406 YE0407 PF06094 AIG2-like family YE0408 PF00719 Inorganic pyrophosphatase YE0409 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE0409 PF00672 HAMP domain YE0409 PF02203 Tar ligand binding domain homologue YE0410 PF00316 Fructose-1-6-bisphosphatase YE0411 PF01225 Mur ligase family, catalytic domain YE0411 PF02875 Mur ligase family, glutamate ligase domain YE0411 PF08245 Mur ligase middle domain YE0412 PF07338 Protein of unknown function (DUF1471) YE0413 PF01316 Arginine repressor, DNA binding domain YE0413 PF02863 Arginine repressor, C-terminal domain YE0414 PF00056 lactate/malate dehydrogenase, NAD binding domain YE0414 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YE0414a PF13693 Winged helix-turn-helix DNA-binding YE0417 PF00348 Polyprenyl synthetase YE0418 PF00829 Ribosomal prokaryotic L21 protein YE0419 PF01016 Ribosomal L27 protein YE0420 PF00892 EamA-like transporter family YE0421 PF01018 GTP1/OBG YE0421 PF01926 50S ribosome-binding GTPase YE0422 PF00512 His Kinase A (phospho-acceptor) domain YE0422 PF00672 HAMP domain YE0422 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE0423 PF00072 Response regulator receiver domain YE0423 PF00486 Transcriptional regulatory protein, C terminal YE0424 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YE0425 PF01272 Transcription elongation factor, GreA/GreB, C-term YE0425 PF03449 Transcription elongation factor, N-terminal YE0426 PF01985 CRS1 / YhbY (CRM) domain YE0427 PF01728 FtsJ-like methyltransferase YE0428 PF00004 ATPase family associated with various cellular activities (AAA) YE0428 PF01434 Peptidase family M41 YE0428 PF06480 FtsH Extracellular YE0429 PF00809 Pterin binding enzyme YE0430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YE0430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YE0430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YE0430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YE0431 PF03840 Preprotein translocase SecG subunit YE0432 PF02576 Uncharacterised BCR, YhbC family COG0779 YE0433 PF08529 NusA N-terminal domain YE0433 PF13184 NusA-like KH domain YE0433 PF14520 Helix-hairpin-helix domain YE0434 PF00009 Elongation factor Tu GTP binding domain YE0434 PF03144 Elongation factor Tu domain 2 YE0434 PF04760 Translation initiation factor IF-2, N-terminal region YE0434 PF08364 YE0434 YE0434 PF11987 Translation-initiation factor 2 YE0435 PF02033 Ribosome-binding factor A YE0436 PF01509 TruB family pseudouridylate synthase (N terminal domain) YE0436 PF09157 Pseudouridine synthase II TruB, C-terminal YE0436 PF16198 YE0436 YE0437 PF00312 Ribosomal protein S15 YE0438 PF00013 KH domain YE0438 PF00575 S1 RNA binding domain YE0438 PF01138 3' exoribonuclease family, domain 1 YE0438 PF03725 3' exoribonuclease family, domain 2 YE0438 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YE0439 PF07719 Tetratricopeptide repeat YE0439 PF13181 Tetratricopeptide repeat YE0440 PF00270 DEAD/DEAH box helicase YE0440 PF00271 Helicase conserved C-terminal domain YE0440 PF03880 DbpA RNA binding domain YE0440 PF12343 YE0440 YE0442 PF00296 Luciferase-like monooxygenase YE0443 PF16576 YE0443 YE0444 PF00873 AcrB/AcrD/AcrF family YE0445 PF02321 Outer membrane efflux protein YE0448 PF03313 YE0448 YE0449 PF01136 YE0449 YE0450 PF01136 YE0450 YE0451 PF02036 SCP-2 sterol transfer family YE0452 PF00583 Acetyltransferase (GNAT) family YE0453 PF01541 GIY-YIG catalytic domain YE0454 PF13520 Amino acid permease YE0455 PF01276 Orn/Lys/Arg decarboxylase, major domain YE0455 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YE0455 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YE0458 PF07940 Heparinase II/III-like protein YE0459 PF05426 Alginate lyase YE0460 PF01547 Bacterial extracellular solute-binding protein YE0461 PF00528 Binding-protein-dependent transport system inner membrane component YE0462 PF00528 Binding-protein-dependent transport system inner membrane component YE0463 PF00005 ABC transporter YE0463 PF08402 TOBE domain YE0464 PF05426 Alginate lyase YE0469 PF12706 Beta-lactamase superfamily domain YE0471 PF07969 Amidohydrolase family YE0472 PF00005 ABC transporter YE0473 PF00005 ABC transporter YE0474 PF06007 YE0474 YE0475 PF05861 YE0475 YE0476 PF05845 Bacterial phosphonate metabolism protein (PhnH) YE0477 PF06754 YE0477 YE0478 PF00392 Bacterial regulatory proteins, gntR family YE0478 PF07702 UTRA domain YE0479 PF15984 YE0479 YE0480 PF08479 POTRA domain, ShlB-type YE0481 PF13353 4Fe-4S single cluster domain YE0482 PF03477 ATP cone domain YE0482 PF13597 Anaerobic ribonucleoside-triphosphate reductase YE0483 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE0483 PF03466 LysR substrate binding domain YE0484 PF02525 Flavodoxin-like fold YE0487 PF00005 ABC transporter YE0488 PF00005 ABC transporter YE0489 PF00528 Binding-protein-dependent transport system inner membrane component YE0489 PF12911 YE0489 YE0490 PF00528 Binding-protein-dependent transport system inner membrane component YE0491 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YE0492 PF04074 Domain of unknown function (DUF386) YE0494 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YE0494 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YE0495 PF06877 Regulator of ribonuclease activity B YE0497 PF00583 Acetyltransferase (GNAT) family YE0498 PF00133 tRNA synthetases class I (I, L, M and V) YE0498 PF08264 Anticodon-binding domain of tRNA YE0498 PF10458 Valyl tRNA synthetase tRNA binding arm YE0499 PF04364 DNA polymerase III chi subunit, HolC YE0500 PF00883 Cytosol aminopeptidase family, catalytic domain YE0500 PF02789 Cytosol aminopeptidase family, N-terminal domain YE0501 PF03739 YE0501 YE0502 PF03739 YE0502 YE0506 PF14384 YE0506 YE0510 PF04221 RelB antitoxin YE0510A PF05016 Plasmid stabilisation system protein YE0513 PF00583 Acetyltransferase (GNAT) family YE0514 PF00196 Bacterial regulatory proteins, luxR family YE0514 PF08448 PAS fold YE0515 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YE0518 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YE0519 PF13391 YE0519 YE0521 PF10696 YE0521 YE0523 PF03992 Antibiotic biosynthesis monooxygenase YE0524 PF01791 DeoC/LacD family aldolase YE0525 PF13407 Periplasmic binding protein domain YE0526 PF02653 YE0526 YE0527 PF02653 YE0527 YE0528 PF00005 ABC transporter YE0529 PF04198 Putative sugar-binding domain YE0530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YE0530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YE0531 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YE0532 PF04932 YE0532 YE0534 PF13520 Amino acid permease YE0535 PF02274 Amidinotransferase YE0536 PF16576 YE0536 YE0537 PF00873 AcrB/AcrD/AcrF family YE0538 PF01609 Transposase DDE domain YE0538 PF13006 YE0538 YE0539 PF00465 Iron-containing alcohol dehydrogenase YE0540 PF02733 Dak1 domain YE0541 PF02734 DAK2 domain YE0542 PF00381 PTS HPr component phosphorylation site YE0542 PF00391 PEP-utilising enzyme, mobile domain YE0542 PF03610 PTS system fructose IIA component YE0542 PF05524 PEP-utilising enzyme, N-terminal YE0543 PF00534 Glycosyl transferases group 1 YE0544 PF02543 Carbamoyltransferase YE0544 PF16861 YE0544 YE0547 PF07690 Major Facilitator Superfamily YE0548 PF10014 2OG-Fe dioxygenase YE0549 PF01095 Pectinesterase YE0550 PF00158 Sigma-54 interaction domain YE0550 PF00989 PAS fold YE0550 PF02954 Bacterial regulatory protein, Fis family YE0550A PF00356 Bacterial regulatory proteins, lacI family YE0550A PF13377 Periplasmic binding protein-like domain YE0551 PF00251 Glycosyl hydrolases family 32 N-terminal domain YE0552 PF00367 phosphotransferase system, EIIB YE0552 PF02378 Phosphotransferase system, EIIC YE0553 PF02264 LamB porin YE0553 PF11471 YE0553 YE0554 PF00294 pfkB family carbohydrate kinase YE0555 PF01497 Periplasmic binding protein YE0556 PF00593 TonB dependent receptor YE0556 PF07715 TonB-dependent Receptor Plug Domain YE0557 PF00990 GGDEF domain YE0558 PF07256 YE0558 YE0559 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE0559 PF03466 LysR substrate binding domain YE0560 PF00248 Aldo/keto reductase family YE0561 PF05175 Methyltransferase small domain YE0561 PF08468 Methyltransferase small domain N-terminal YE0562 PF03603 DNA polymerase III psi subunit YE0563 PF13673 Acetyltransferase (GNAT) domain YE0564 PF00009 Elongation factor Tu GTP binding domain YE0564 PF03144 Elongation factor Tu domain 2 YE0564 PF16658 YE0564 YE0565 PF04972 BON domain YE0565a PF07043 YE0565a YE0567 PF01734 Patatin-like phospholipase YE0568 PF01026 TatD related DNase YE0569 PF01773 Na+ dependent nucleoside transporter N-terminus YE0569 PF07662 Na+ dependent nucleoside transporter C-terminus YE0569 PF07670 Nucleoside recognition YE0570 PF01791 DeoC/LacD family aldolase YE0571 PF00591 Glycosyl transferase family, a/b domain YE0571 PF02885 Glycosyl transferase family, helical bundle domain YE0571 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YE0572 PF01676 Metalloenzyme superfamily YE0574 PF01048 Phosphorylase superfamily YE0575 PF01022 Bacterial regulatory protein, arsR family YE0575 PF07804 HipA-like C-terminal domain YE0575 PF07805 HipA-like N-terminal domain YE0576 PF10144 YE0576 YE0578 PF12710 haloacid dehalogenase-like hydrolase YE0579 PF13481 AAA domain YE0579 PF13541 Subunit ChlI of Mg-chelatase YE0580 PF01381 Helix-turn-helix YE0580 PF13521 AAA domain YE0581 PF08240 Alcohol dehydrogenase GroES-like domain YE0581 PF13602 Zinc-binding dehydrogenase YE0582 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE0582 PF03466 LysR substrate binding domain YE0583 PF02661 Fic/DOC family YE0583 PF13776 YE0583 YE0584 PF00005 ABC transporter YE0584 PF12848 ABC transporter YE0585 PF00691 OmpA family YE0586 PF00990 GGDEF domain YE0586 PF17152 YE0586 YE0587 PF13689 YE0587 YE0588 PF00122 E1-E2 ATPase YE0588 PF00689 Cation transporting ATPase, C-terminus YE0588 PF00690 Cation transporter/ATPase, N-terminus YE0588 PF00702 haloacid dehalogenase-like hydrolase YE0589 PF01464 Transglycosylase SLT domain YE0589 PF14718 Soluble lytic murein transglycosylase L domain YE0590 PF01371 Trp repressor protein YE0591 PF01931 Protein of unknown function DUF84 YE0592 PF00300 Histidine phosphatase superfamily (branch 1) YE0593 PF06445 GyrI-like small molecule binding domain YE0593 PF12833 Helix-turn-helix domain YE0594 PF05981 YE0594 YE0595 PF00072 Response regulator receiver domain YE0595 PF00486 Transcriptional regulatory protein, C terminal YE0599 PF01609 Transposase DDE domain YE0599 PF13006 YE0599 YE0600 PF00696 Amino acid kinase family YE0600 PF00742 Homoserine dehydrogenase YE0600 PF01842 ACT domain YE0600 PF03447 Homoserine dehydrogenase, NAD binding domain YE0600 PF13840 ACT domain YE0601 PF00288 GHMP kinases N terminal domain YE0601 PF08544 GHMP kinases C terminal YE0602 PF00291 Pyridoxal-phosphate dependent enzyme YE0602 PF14821 Threonine synthase N terminus YE0603 PF03883 YE0603 YE0604 PF00923 Transaldolase YE0605 PF00994 Probable molybdopterin binding domain YE0606 PF07690 Major Facilitator Superfamily YE0607 PF03995 Peptidase inhibitor family I36 YE0608 PF01184 YE0608 YE0609 PF00012 Hsp70 protein YE0610 PF00226 DnaJ domain YE0610 PF00684 DnaJ central domain YE0610 PF01556 DnaJ C terminal domain YE0611 PF06965 Na+/H+ antiporter 1 YE0612 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE0612 PF03466 LysR substrate binding domain YE0613 PF01649 Ribosomal protein S20 YE0615 PF01687 Riboflavin kinase YE0615 PF06574 FAD synthetase YE0616 PF00133 tRNA synthetases class I (I, L, M and V) YE0616 PF06827 Zinc finger found in FPG and IleRS YE0616 PF08264 Anticodon-binding domain of tRNA YE0617 PF01252 YE0617 YE0618 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YE0619 PF02401 LytB protein YE0620 PF01113 Dihydrodipicolinate reductase, N-terminus YE0620 PF05173 Dihydrodipicolinate reductase, C-terminus YE0621 PF00117 Glutamine amidotransferase class-I YE0621 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YE0622 PF02142 MGS-like domain YE0622 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YE0622 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YE0623 PF01810 YE0623 YE0624 PF06738 YE0624 YE0625 PF12821 YE0625 YE0626 PF00186 Dihydrofolate reductase YE0628 PF00149 Calcineurin-like phosphoesterase YE0629 PF04379 Protein of unknown function (DUF525) YE0630 PF00398 Ribosomal RNA adenine dimethylase YE0631 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YE0632 PF00639 PPIC-type PPIASE domain YE0632 PF09312 SurA N-terminal domain YE0633 PF03968 OstA-like protein YE0633 PF04453 Organic solvent tolerance protein YE0634 PF00226 DnaJ domain YE0634 PF05099 Tellurite resistance protein TerB YE0635 PF00849 RNA pseudouridylate synthase YE0636 PF00176 SNF2 family N-terminal domain YE0636 PF00271 Helicase conserved C-terminal domain YE0636 PF12137 RNA polymerase recycling family C-terminal YE0637 PF00136 DNA polymerase family B YE0637 PF03104 DNA polymerase family B, exonuclease domain YE0639 PF09335 YE0639 YE0640 PF00005 ABC transporter YE0641 PF00528 Binding-protein-dependent transport system inner membrane component YE0642 PF01547 Bacterial extracellular solute-binding protein YE0643 PF13988 YE0643 YE0644 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YE0644 PF12793 YE0644 YE0645 PF04055 Radical SAM superfamily YE0645 PF13353 4Fe-4S single cluster domain YE0646 PF01228 Glycine radical YE0646 PF02901 Pyruvate formate lyase YE0647 PF04221 RelB antitoxin YE0647a PF15738 YE0647a YE0648 PF07690 Major Facilitator Superfamily YE0649 PF03222 Tryptophan/tyrosine permease family YE0650 PF01212 Beta-eliminating lyase YE0651 PF00694 Aconitase C-terminal domain YE0652 PF00330 Aconitase family (aconitate hydratase) YE0653 PF00180 Isocitrate/isopropylmalate dehydrogenase YE0654 PF00682 HMGL-like YE0654 PF08502 LeuA allosteric (dimerisation) domain YE0655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE0655 PF03466 LysR substrate binding domain YE0656 PF00501 AMP-binding enzyme YE0658 PF00205 Thiamine pyrophosphate enzyme, central domain YE0658 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YE0658 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YE0659 PF01842 ACT domain YE0659 PF10369 Small subunit of acetolactate synthase YE0661 PF00356 Bacterial regulatory proteins, lacI family YE0661 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YE0662 PF06610 YE0662 YE0663 PF02381 MraZ protein YE0664 PF01795 MraW methylase family YE0665 PF04999 YE0665 YE0666 PF00905 Penicillin binding protein transpeptidase domain YE0666 PF03717 Penicillin-binding Protein dimerisation domain YE0667 PF01225 Mur ligase family, catalytic domain YE0667 PF02875 Mur ligase family, glutamate ligase domain YE0667 PF08245 Mur ligase middle domain YE0668 PF01225 Mur ligase family, catalytic domain YE0668 PF02875 Mur ligase family, glutamate ligase domain YE0668 PF08245 Mur ligase middle domain YE0669 PF00953 Glycosyl transferase family 4 YE0669 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YE0670 PF02875 Mur ligase family, glutamate ligase domain YE0670 PF08245 Mur ligase middle domain YE0671 PF01098 YE0671 YE0672 PF03033 Glycosyltransferase family 28 N-terminal domain YE0672 PF04101 Glycosyltransferase family 28 C-terminal domain YE0673 PF01225 Mur ligase family, catalytic domain YE0673 PF02875 Mur ligase family, glutamate ligase domain YE0673 PF08245 Mur ligase middle domain YE0674 PF01820 D-ala D-ala ligase N-terminus YE0674 PF07478 D-ala D-ala ligase C-terminus YE0675 PF03799 Cell division protein FtsQ YE0675 PF08478 POTRA domain, FtsQ-type YE0676 PF02491 SHS2 domain inserted in FTSA YE0676 PF14450 Cell division protein FtsA YE0677 PF00091 Tubulin/FtsZ family, GTPase domain YE0677 PF12327 FtsZ family, C-terminal domain YE0678 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YE0679 PF05258 YE0679 YE0680 PF06558 YE0680 YE0681 PF01043 SecA preprotein cross-linking domain YE0681 PF02810 SEC-C motif YE0681 PF07516 SecA Wing and Scaffold domain YE0681 PF07517 SecA DEAD-like domain YE0682 PF00293 NUDIX domain YE0683 PF03884 Domain of unknown function (DUF329) YE0684 PF07072 Protein of unknown function (DUF1342) YE0685 PF01121 Dephospho-CoA kinase YE0686 PF00478 IMP dehydrogenase / GMP reductase domain YE0688 PF00482 Type II secretion system (T2SS), protein F YE0689 PF00437 Type II/IV secretion system protein YE0689 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YE0690 PF00114 Pilin (bacterial filament) YE0690 PF13633 Prokaryotic N-terminal methylation site YE0691 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YE0691 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YE0692 PF01510 N-acetylmuramoyl-L-alanine amidase YE0693 PF17113 YE0693 YE0694 PF01476 LysM domain YE0694 PF02368 Bacterial Ig-like domain (group 2) YE0694 PF02369 Bacterial Ig-like domain (group 1) YE0694 PF09134 Invasin, domain 3 YE0694 PF11924 Protein of unknown function (DUF3442) YE0695 PF00324 Amino acid permease YE0698 PF00392 Bacterial regulatory proteins, gntR family YE0698 PF07729 FCD domain YE0699 PF00456 Transketolase, thiamine diphosphate binding domain YE0701 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YE0701 PF00364 Biotin-requiring enzyme YE0701 PF02817 e3 binding domain YE0702 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YE0702 PF07992 Pyridine nucleotide-disulphide oxidoreductase YE0703 PF12833 Helix-turn-helix domain YE0704 PF00593 TonB dependent receptor YE0704 PF07715 TonB-dependent Receptor Plug Domain YE0705 PF00330 Aconitase family (aconitate hydratase) YE0705 PF06434 Aconitate hydratase 2 N-terminus YE0705 PF11791 Aconitate B N-terminal domain YE0706 PF06062 YE0706 YE0707 PF00892 EamA-like transporter family YE0709 PF02675 S-adenosylmethionine decarboxylase YE0710 PF01564 Spermine/spermidine synthase YE0711 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) YE0712 PF00394 Multicopper oxidase YE0712 PF07731 Multicopper oxidase YE0712 PF07732 Multicopper oxidase YE0712 PF10518 TAT (twin-arginine translocation) pathway signal sequence YE0713 PF00156 Phosphoribosyl transferase domain YE0714 PF00484 Carbonic anhydrase YE0715 PF00005 ABC transporter YE0716 PF01061 YE0716 YE0717 PF01522 Polysaccharide deacetylase YE0718 PF02261 Aspartate decarboxylase YE0719 PF02569 Pantoate-beta-alanine ligase YE0720 PF02548 Ketopantoate hydroxymethyltransferase YE0722 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YE0723 PF01743 Poly A polymerase head domain YE0723 PF12626 Polymerase A arginine-rich C-terminus YE0723 PF12627 Probable RNA and SrmB- binding site of polymerase A YE0724 PF00749 tRNA synthetases class I (E and Q), catalytic domain YE0725 PF01258 Prokaryotic dksA/traR C4-type zinc finger YE0726 PF03749 Sugar fermentation stimulation protein YE0727 PF13563 2'-5' RNA ligase superfamily YE0728 PF00271 Helicase conserved C-terminal domain YE0728 PF04408 Helicase associated domain (HA2) YE0728 PF08482 YE0728 YE0729 PF00905 Penicillin binding protein transpeptidase domain YE0729 PF00912 Transglycosylase YE0729 PF14812 YE0729 YE0729 PF14814 Bifunctional transglycosylase second domain YE0730 PF00005 ABC transporter YE0731 PF01497 Periplasmic binding protein YE0732 PF01032 FecCD transport family YE0733 PF07690 Major Facilitator Superfamily YE0734 PF00202 Aminotransferase class-III YE0735 PF00654 Voltage gated chloride channel YE0736 PF01521 Iron-sulphur cluster biosynthesis YE0737 PF03458 YE0737 YE0738 PF01497 Periplasmic binding protein YE0739 PF01048 Phosphorylase superfamily YE0740 PF01966 HD domain YE0740 PF13286 Phosphohydrolase-associated domain YE0741 PF00595 PDZ domain (Also known as DHR or GLGF) YE0741 PF13180 PDZ domain YE0741 PF13365 Trypsin-like peptidase domain YE0742 PF00072 Response regulator receiver domain YE0742 PF00512 His Kinase A (phospho-acceptor) domain YE0742 PF00672 HAMP domain YE0742 PF01627 Hpt domain YE0742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE0742 PF09984 YE0742 YE0743 PF01938 TRAM domain YE0743 PF05958 tRNA (Uracil-5-)-methyltransferase YE0744 PF02824 TGS domain YE0744 PF04607 Region found in RelA / SpoT proteins YE0744 PF13291 ACT domain YE0744 PF13328 HD domain YE0745 PF03819 MazG nucleotide pyrophosphohydrolase domain YE0746 PF00117 Glutamine amidotransferase class-I YE0746 PF06418 CTP synthase N-terminus YE0747 PF00113 Enolase, C-terminal TIM barrel domain YE0747 PF03952 Enolase, N-terminal domain YE0748 PF01548 YE0748 YE0748 PF02371 YE0748 YE0752 PF00080 Copper/zinc superoxide dismutase (SODC) YE0753 PF04055 Radical SAM superfamily YE0753 PF13394 4Fe-4S single cluster domain YE0754 PF01242 6-pyruvoyl tetrahydropterin synthase YE0755 PF00175 Oxidoreductase NAD-binding domain YE0755 PF00258 Flavodoxin YE0755 PF00667 FAD binding domain YE0756 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YE0756 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YE0757 PF01507 Phosphoadenosine phosphosulfate reductase family YE0758 PF15919 YE0758 YE0759 PF07927 YcfA-like protein YE0760 PF04389 Peptidase family M28 YE0761 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YE0761 PF10414 Sirohaem synthase dimerisation region YE0761 PF13241 Putative NAD(P)-binding YE0761 PF14824 Sirohaem biosynthesis protein central YE0762 PF01507 Phosphoadenosine phosphosulfate reductase family YE0763 PF00009 Elongation factor Tu GTP binding domain YE0764 PF01583 Adenylylsulphate kinase YE0766 PF12084 YE0766 YE0768 PF04977 Septum formation initiator YE0769 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YE0770 PF02542 YgbB family YE0771 PF01142 tRNA pseudouridine synthase D (TruD) YE0772 PF01975 Survival protein SurE YE0773 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) YE0774 PF01476 LysM domain YE0774 PF01551 Peptidase family M23 YE0775 PF00140 Sigma-70 factor, region 1 YE0775 PF04539 Sigma-70 region 3 YE0775 PF04542 Sigma-70 region 2 YE0775 PF04545 Sigma-70, region 4 YE0776 PF00488 MutS domain V YE0776 PF01624 MutS domain I YE0776 PF05188 MutS domain II YE0776 PF05190 MutS family domain IV YE0776 PF05192 MutS domain III YE0777 PF04932 YE0777 YE0777 PF11846 YE0777 YE0777 PF15864 YE0777 YE0778 PF04703 FaeA-like protein YE0779 PF00419 Fimbrial protein YE0781 PF00577 Outer membrane usher protein YE0781 PF13953 PapC C-terminal domain YE0781 PF13954 PapC N-terminal domain YE0782 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YE0782 PF02753 Pili assembly chaperone PapD, C-terminal domain YE0783 PF00419 Fimbrial protein YE0784 PF00419 Fimbrial protein YE0785 PF00419 Fimbrial protein YE0788 PF15959 YE0788 YE0789 PF01323 DSBA-like thioredoxin domain YE0791 PF00005 ABC transporter YE0791 PF00664 ABC transporter transmembrane region YE0791 PF03412 Peptidase C39 family YE0792 PF16576 YE0792 YE0793 PF00005 ABC transporter YE0793 PF02687 YE0793 YE0793 PF12704 MacB-like periplasmic core domain YE0794 PF02321 Outer membrane efflux protein YE0795 PF00109 Beta-ketoacyl synthase, N-terminal domain YE0795 PF02801 Beta-ketoacyl synthase, C-terminal domain YE0797 PF00550 Phosphopantetheine attachment site YE0798 PF13561 Enoyl-(Acyl carrier protein) reductase YE0799 PF00155 Aminotransferase class I and II YE0800 PF00291 Pyridoxal-phosphate dependent enzyme YE0801 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE0802 PF00528 Binding-protein-dependent transport system inner membrane component YE0803 PF00528 Binding-protein-dependent transport system inner membrane component YE0804 PF00005 ABC transporter YE0805 PF01546 Peptidase family M20/M25/M40 YE0805 PF07687 Peptidase dimerisation domain YE0806 PF09347 Domain of unknown function (DUF1989) YE0807 PF07883 Cupin domain YE0807 PF13560 Helix-turn-helix domain YE0808 PF00009 Elongation factor Tu GTP binding domain YE0808 PF00679 Elongation factor G C-terminus YE0808 PF03144 Elongation factor Tu domain 2 YE0808 PF03764 Elongation factor G, domain IV YE0808 PF14492 Elongation Factor G, domain II YE0809 PF12840 Helix-turn-helix domain YE0810 PF00107 Zinc-binding dehydrogenase YE0810 PF08240 Alcohol dehydrogenase GroES-like domain YE0811 PF03613 YE0811 YE0812 PF03609 YE0812 YE0813 PF03830 PTS system sorbose subfamily IIB component YE0814 PF03610 PTS system fructose IIA component YE0815 PF04198 Putative sugar-binding domain YE0815 PF13545 Crp-like helix-turn-helix domain YE0816 PF05681 YE0816 YE0816 PF05683 Fumarase C-terminus YE0818 PF13407 Periplasmic binding protein domain YE0819 PF10054 Predicted periplasmic lipoprotein (DUF2291) YE0820 PF00005 ABC transporter YE0821 PF02653 YE0821 YE0822 PF00456 Transketolase, thiamine diphosphate binding domain YE0823 PF02779 Transketolase, pyrimidine binding domain YE0823 PF02780 Transketolase, C-terminal domain YE0824 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YE0824 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YE0825 PF02952 L-fucose isomerase, C-terminal domain YE0826 PF01047 MarR family YE0826 PF04198 Putative sugar-binding domain YE0827 PF07690 Major Facilitator Superfamily YE0828 PF02464 Competence-damaged protein YE0829 PF00154 recA bacterial DNA recombination protein YE0831 PF01527 Transposase YE0832 PF00665 Integrase core domain YE0832 PF13276 YE0832 YE0833 PF02631 RecX family YE0834 PF01411 tRNA synthetases class II (A) YE0834 PF02272 DHHA1 domain YE0834 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YE0835 PF02599 Global regulator protein family YE0836 PF13419 Haloacid dehalogenase-like hydrolase YE0837 PF09335 YE0837 YE0838 PF04262 Glutamate-cysteine ligase YE0839 PF02664 S-Ribosylhomocysteinase (LuxS) YE0840 PF01595 YE0840 YE0840 PF03471 Transporter associated domain YE0841 PF01578 YE0841 YE0842 PF00448 SRP54-type protein, GTPase domain YE0842 PF02881 SRP54-type protein, helical bundle domain YE0842 PF02978 Signal peptide binding domain YE0843 PF00886 Ribosomal protein S16 YE0844 PF01782 RimM N-terminal domain YE0844 PF05239 PRC-barrel domain YE0845 PF01746 tRNA (Guanine-1)-methyltransferase YE0846 PF01245 Ribosomal protein L19 YE0847 PF04338 Protein of unknown function, DUF481 YE0848 PF03605 YE0848 YE0849 PF00072 Response regulator receiver domain YE0849 PF04397 LytTr DNA-binding domain YE0850 PF00793 DAHP synthetase I family YE0851 PF01817 Chorismate mutase type II YE0851 PF02153 Prephenate dehydrogenase YE0852 PF00800 Prephenate dehydratase YE0852 PF01817 Chorismate mutase type II YE0853 PF00589 Phage integrase family YE0854 PF01381 Helix-turn-helix YE0855 PF10743 Regulatory phage protein cox YE0860 PF12961 Domain of Unknown Function with PDB structure (DUF3850) YE0861 PF05840 YE0861 YE0865 PF04606 YE0865 YE0866 PF04860 Phage portal protein YE0867 PF03237 Terminase-like family YE0867 PF06056 Putative ATPase subunit of terminase (gpP-like) YE0868 PF05929 YE0868 YE0869 PF05125 YE0869 YE0870 PF05944 YE0870 YE0871 PF05926 YE0871 YE0871A PF06891 YE0871A YE0873 PF10758 YE0873 YE0874 PF10772 YE0874 YE0875 PF04550 YE0875 YE0876 PF13539 D-alanyl-D-alanine carboxypeptidase YE0878 PF10963 YE0878 YE0879 PF10145 YE0879 YE0880 PF10761 YE0880 YE0881 PF04865 YE0881 YE0883 PF03406 YE0883 YE0883 PF07484 Phage Tail Collar Domain YE0883 PF12571 YE0883 YE0889 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YE0890 PF13525 Outer membrane lipoprotein YE0891 PF00849 RNA pseudouridylate synthase YE0891 PF01479 S4 domain YE0892 PF02578 Multi-copper polyphenol oxidoreductase laccase YE0893 PF00004 ATPase family associated with various cellular activities (AAA) YE0893 PF02861 Clp amino terminal domain YE0893 PF07724 AAA domain (Cdc48 subfamily) YE0893 PF10431 C-terminal, D2-small domain, of ClpB protein YE0894 PF00891 O-methyltransferase YE0896 PF13723 YE0896 YE0897 PF01553 Acyltransferase YE0898 PF00550 Phosphopantetheine attachment site YE0899 PF00550 Phosphopantetheine attachment site YE0901 PF00501 AMP-binding enzyme YE0901 PF13193 AMP-binding enzyme C-terminal domain YE0902 PF07977 FabA-like domain YE0903 PF00535 Glycosyl transferase family 2 YE0904 PF13279 Thioesterase-like superfamily YE0905 PF03548 Outer membrane lipoprotein carrier protein LolA YE0906 PF03176 MMPL family YE0907 PF11659 YE0907 YE0908 PF00109 Beta-ketoacyl synthase, N-terminal domain YE0908 PF02801 Beta-ketoacyl synthase, C-terminal domain YE0909 PF07977 FabA-like domain YE0910 PF13561 Enoyl-(Acyl carrier protein) reductase YE0911 PF00109 Beta-ketoacyl synthase, N-terminal domain YE0911 PF02801 Beta-ketoacyl synthase, C-terminal domain YE0912 PF00248 Aldo/keto reductase family YE0914 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE0914 PF03466 LysR substrate binding domain YE0917 PF03372 Endonuclease/Exonuclease/phosphatase family YE0918 PF01464 Transglycosylase SLT domain YE0918 PF01476 LysM domain YE0919 PF00753 Metallo-beta-lactamase superfamily YE0919 PF16123 YE0919 YE0920 PF08241 Methyltransferase domain YE0921 PF00075 RNase H YE0922 PF00929 Exonuclease YE0923 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YE0924 PF00528 Binding-protein-dependent transport system inner membrane component YE0925 PF00005 ABC transporter YE0925 PF00571 CBS domain YE0926 PF00268 Ribonucleotide reductase, small chain YE0927 PF00317 Ribonucleotide reductase, all-alpha domain YE0927 PF02867 Ribonucleotide reductase, barrel domain YE0927 PF08343 Ribonucleotide reductase N-terminal YE0928 PF07972 NrdI Flavodoxin like YE0929 PF00462 Glutaredoxin YE0930 PF02627 Carboxymuconolactone decarboxylase family YE0931 PF00155 Aminotransferase class I and II YE0931 PF00392 Bacterial regulatory proteins, gntR family YE0932 PF05957 YE0932 YE0934 PF03403 Platelet-activating factor acetylhydrolase, isoform II YE0935 PF12833 Helix-turn-helix domain YE0937 PF09400 Protein of unknown function (DUF2002) YE0938 PF06711 YE0938 YE0939 PF04899 YE0939 YE0940 PF00313 'Cold-shock' DNA-binding domain YE0941 PF01965 DJ-1/PfpI family YE0941 PF12833 Helix-turn-helix domain YE0942 PF00581 Rhodanese-like domain YE0946 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YE0947 PF00528 Binding-protein-dependent transport system inner membrane component YE0948 PF00528 Binding-protein-dependent transport system inner membrane component YE0949 PF00005 ABC transporter YE0950 PF00005 ABC transporter YE0951 PF00547 Urease, gamma subunit YE0952 PF00699 Urease beta subunit YE0953 PF00449 Urease alpha-subunit, N-terminal domain YE0953 PF01979 Amidohydrolase family YE0954 PF02814 UreE urease accessory protein, N-terminal domain YE0954 PF05194 UreE urease accessory protein, C-terminal domain YE0955 PF01730 UreF YE0956 PF02492 CobW/HypB/UreG, nucleotide-binding domain YE0957 PF01774 UreD urease accessory protein YE0958 PF03253 Urea transporter YE0959 PF03824 YE0959 YE0960 PF06411 HdeA/HdeB family YE0961 PF02254 TrkA-N domain YE0961 PF07885 Ion channel YE0963 PF02537 YE0963 YE0964 PF02537 YE0964 YE0965 PF00248 Aldo/keto reductase family YE0966 PF07995 Glucose / Sorbosone dehydrogenase YE0967 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YE0968 PF02378 Phosphotransferase system, EIIC YE0969 PF00232 Glycosyl hydrolase family 1 YE0970 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YE0971 PF07883 Cupin domain YE0971 PF12833 Helix-turn-helix domain YE0972 PF04794 YdjC-like protein YE0973 PF00916 YE0973 YE0973 PF01740 STAS domain YE0975A PF05930 Prophage CP4-57 regulatory protein (AlpA) YE0977 PF00589 Phage integrase family YE0978 PF00589 Phage integrase family YE0983 PF15947 YE0983 YE0984 PF03432 YE0984 YE0988 PF13289 YE0988 YE0990 PF12532 YE0990 YE0993 PF00589 Phage integrase family YE0993 PF13356 Domain of unknown function (DUF4102) YE0994 PF01668 SmpB protein YE0995 PF03364 Polyketide cyclase / dehydrase and lipid transport YE0996 PF03658 RnfH family Ubiquitin YE0997 PF04355 SmpA / OmlA family YE0998 PF02463 RecF/RecN/SMC N terminal domain YE0999 PF01513 ATP-NAD kinase YE1000 PF01025 GrpE YE1001 PF01797 Transposase IS200 like YE1002 PF03167 Uracil DNA glycosylase superfamily YE1003 PF01228 Glycine radical YE1005 PF11187 Protein of unknown function (DUF2974) YE1006 PF00023 Ankyrin repeat YE1006 PF12796 Ankyrin repeats (3 copies) YE1007 PF00270 DEAD/DEAH box helicase YE1007 PF00271 Helicase conserved C-terminal domain YE1008 PF05175 Methyltransferase small domain YE1009 PF00890 FAD binding domain YE1009 PF02910 Fumarate reductase flavoprotein C-term YE1010 PF04542 Sigma-70 region 2 YE1010 PF08281 Sigma-70, region 4 YE1011 PF03872 Anti sigma-E protein RseA, N-terminal domain YE1011 PF03873 Anti sigma-E protein RseA, C-terminal domain YE1012 PF03888 MucB/RseB family YE1012 PF17188 YE1012 YE1013 PF04246 YE1013 YE1015 PF00009 Elongation factor Tu GTP binding domain YE1015 PF00679 Elongation factor G C-terminus YE1015 PF03144 Elongation factor Tu domain 2 YE1015 PF06421 GTP-binding protein LepA C-terminus YE1016 PF00717 Peptidase S24-like YE1016 PF10502 Signal peptidase, peptidase S26 YE1017 PF00035 Double-stranded RNA binding motif YE1017 PF14622 Ribonuclease-III-like YE1018 PF01926 50S ribosome-binding GTPase YE1018 PF07650 KH domain YE1019 PF02565 Recombination protein O C terminal YE1019 PF11967 Recombination protein O N terminal YE1020 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YE1021 PF01648 4'-phosphopantetheinyl transferase superfamily YE1023 PF02447 YE1023 YE1024 PF12838 4Fe-4S dicluster domain YE1025 PF01380 SIS domain YE1025 PF01418 Helix-turn-helix domain, rpiR family YE1026 PF00196 Bacterial regulatory proteins, luxR family YE1026 PF03472 Autoinducer binding domain YE1026A PF13693 Winged helix-turn-helix DNA-binding YE1027 PF01380 SIS domain YE1028 PF12710 haloacid dehalogenase-like hydrolase YE1029 PF09925 YE1029 YE1030 PF14437 YE1030 YE1031 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE1031 PF01464 Transglycosylase SLT domain YE1032 PF02769 AIR synthase related protein, C-terminal domain YE1032 PF13507 CobB/CobQ-like glutamine amidotransferase domain YE1035 PF00512 His Kinase A (phospho-acceptor) domain YE1035 PF00672 HAMP domain YE1035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE1036 PF13942 YE1036 YE1037 PF00072 Response regulator receiver domain YE1037 PF00158 Sigma-54 interaction domain YE1038 PF00795 Carbon-nitrogen hydrolase YE1038 PF02540 NAD synthase YE1039 PF00543 Nitrogen regulatory protein P-II YE1040 PF10797 YE1040 YE1041 PF10941 YE1041 YE1042 PF02126 Phosphotriesterase family YE1043 PF01168 Alanine racemase, N-terminal domain YE1044 PF00874 PRD domain YE1045 PF14502 Helix-turn-helix domain YE1045 PF14503 YhfZ C-terminal domain YE1046 PF00042 Globin YE1046 PF00175 Oxidoreductase NAD-binding domain YE1046 PF00970 Oxidoreductase FAD-binding domain YE1047 PF00464 Serine hydroxymethyltransferase YE1049 PF12832 MFS_1 like family YE1050 PF00874 PRD domain YE1051 PF06226 YE1051 YE1052 PF03824 YE1052 YE1054 PF00459 Inositol monophosphatase family YE1055 PF00588 SpoU rRNA Methylase family YE1056 PF02082 Transcriptional regulator YE1057 PF00266 Aminotransferase class-V YE1058 PF01592 NifU-like N terminal domain YE1059 PF01521 Iron-sulphur cluster biosynthesis YE1060 PF00226 DnaJ domain YE1060 PF07743 HSCB C-terminal oligomerisation domain YE1061 PF00012 Hsp70 protein YE1062 PF00111 2Fe-2S iron-sulfur cluster binding domain YE1063 PF04384 Iron-sulphur cluster assembly YE1064 PF00883 Cytosol aminopeptidase family, catalytic domain YE1064 PF12404 YE1064 YE1065 PF07179 YE1065 YE1065 PF14581 YE1065 YE1066 PF00207 Alpha-2-macroglobulin family YE1066 PF01835 MG2 domain YE1066 PF07703 Alpha-2-macroglobulin family N-terminal region YE1066 PF10569 Alpha-macro-globulin thiol-ester bond-forming region YE1066 PF11974 Alpha-2-macroglobulin MG1 domain YE1067 PF00905 Penicillin binding protein transpeptidase domain YE1067 PF00912 Transglycosylase YE1067 PF06832 YE1067 YE1068 PF00030 Beta/Gamma crystallin YE1068 PF03995 Peptidase inhibitor family I36 YE1068 PF09101 Exotoxin A binding YE1069 PF00334 Nucleoside diphosphate kinase YE1070 PF04055 Radical SAM superfamily YE1071 PF13432 Tetratricopeptide repeat YE1072 PF13413 Helix-turn-helix domain YE1072 PF13464 YE1072 YE1073 PF04551 GcpE protein YE1074 PF03129 Anticodon binding domain YE1074 PF13393 Histidyl-tRNA synthetase YE1075 PF09976 Tetratricopeptide repeat YE1076 PF13360 PQQ-like domain YE1077 PF01926 50S ribosome-binding GTPase YE1077 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YE1078 PF03547 YE1078 YE1079 PF07191 zinc-ribbons YE1080 PF02601 YE1080 YE1080 PF13742 YE1080 YE1081 PF00478 IMP dehydrogenase / GMP reductase domain YE1081 PF00571 CBS domain YE1082 PF00117 Glutamine amidotransferase class-I YE1082 PF00958 GMP synthase C terminal domain YE1082 PF02540 NAD synthase YE1084 PF12318 YE1084 YE1085 PF00890 FAD binding domain YE1085 PF05199 GMC oxidoreductase YE1086 PF00034 Cytochrome c YE1086 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YE1087 PF13673 Acetyltransferase (GNAT) domain YE1088 PF08543 Phosphomethylpyrimidine kinase YE1091 PF08816 Inhibitor of vertebrate lysozyme (Ivy) YE1092 PF00571 CBS domain YE1092 PF01380 SIS domain YE1093 PF00455 YE1093 YE1093 PF08220 DeoR-like helix-turn-helix domain YE1094 PF06923 YE1094 YE1095 PF00106 short chain dehydrogenase YE1096 PF03829 PTS system glucitol/sorbitol-specific IIA component YE1097 PF03612 YE1097 YE1097 PF07663 YE1097 YE1098 PF03608 YE1098 YE1099 PF00781 Diacylglycerol kinase catalytic domain YE1100 PF01136 YE1100 YE1100 PF16325 YE1100 YE1102 PF01381 Helix-turn-helix YE1103 PF07411 Domain of unknown function (DUF1508) YE1104 PF00072 Response regulator receiver domain YE1104 PF00486 Transcriptional regulatory protein, C terminal YE1105 PF00512 His Kinase A (phospho-acceptor) domain YE1105 PF00672 HAMP domain YE1105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE1106 PF07690 Major Facilitator Superfamily YE1107 PF00873 AcrB/AcrD/AcrF family YE1108 PF00873 AcrB/AcrD/AcrF family YE1109 PF13437 HlyD family secretion protein YE1109 PF13533 Biotin-lipoyl like YE1110 PF15738 YE1110 YE1111 PF00419 Fimbrial protein YE1112 PF00577 Outer membrane usher protein YE1112 PF13953 PapC C-terminal domain YE1112 PF13954 PapC N-terminal domain YE1113 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YE1113 PF02753 Pili assembly chaperone PapD, C-terminal domain YE1114 PF00419 Fimbrial protein YE1115 PF00012 Hsp70 protein YE1116 PF00563 EAL domain YE1116 PF00990 GGDEF domain YE1116 PF05231 YE1116 YE1116 PF08447 PAS fold YE1116 PF08448 PAS fold YE1117 PF00571 CBS domain YE1117 PF01769 Divalent cation transporter YE1117 PF03448 MgtE intracellular N domain YE1118 PF11119 YE1118 YE1119 PF02541 Ppx/GppA phosphatase family YE1120 PF02503 Polyphosphate kinase middle domain YE1120 PF13089 Polyphosphate kinase N-terminal domain YE1120 PF13090 Polyphosphate kinase C-terminal domain YE1122 PF13276 YE1122 YE1122 PF13683 YE1122 YE1123 PF01527 Transposase YE1123A PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain YE1124 PF13302 Acetyltransferase (GNAT) domain YE1125 PF00551 Formyl transferase YE1127 PF00586 AIR synthase related protein, N-terminal domain YE1127 PF02769 AIR synthase related protein, C-terminal domain YE1128 PF14681 Uracil phosphoribosyltransferase YE1129 PF00860 Permease family YE1130 PF00308 Bacterial dnaA protein YE1131 PF03960 ArsC family YE1132 PF01435 Peptidase family M48 YE1132 PF14559 Tetratricopeptide repeat YE1133 PF01594 YE1133 YE1134 PF01548 YE1134 YE1134 PF02371 YE1134 YE1135 PF00578 AhpC/TSA family YE1136 PF13740 ACT domain YE1137 PF00701 Dihydrodipicolinate synthetase family YE1138 PF06804 NlpB/DapX lipoprotein YE1140 PF01259 SAICAR synthetase YE1141 PF04228 YE1141 YE1142 PF04284 YE1142 YE1143 PF05127 Helicase YE1143 PF08351 Domain of unknown function (DUF1726) YE1143 PF13718 GNAT acetyltransferase 2 YE1143 PF17176 YE1143 YE1144 PF02230 Phospholipase/Carboxylesterase YE1145 PF13980 YE1145 YE1146 PF02557 D-alanyl-D-alanine carboxypeptidase YE1147 PF01546 Peptidase family M20/M25/M40 YE1147 PF07687 Peptidase dimerisation domain YE1148 PF03960 ArsC family YE1149 PF12688 Tetratrico peptide repeat YE1149 PF13174 Tetratricopeptide repeat YE1150 PF02624 YcaO-like family YE1151 PF00873 AcrB/AcrD/AcrF family YE1152 PF09904 Winged helix-turn helix YE1153 PF00072 Response regulator receiver domain YE1153 PF00196 Bacterial regulatory proteins, luxR family YE1154 PF12838 4Fe-4S dicluster domain YE1154 PF13187 4Fe-4S dicluster domain YE1155 PF03927 NapD protein YE1156 PF00384 Molybdopterin oxidoreductase YE1156 PF01568 Molydopterin dinucleotide binding domain YE1156 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YE1156 PF10518 TAT (twin-arginine translocation) pathway signal sequence YE1157 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YE1158 PF03264 NapC/NirT cytochrome c family, N-terminal region YE1159 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system YE1160 PF05016 Plasmid stabilisation system protein YE1161 PF00293 NUDIX domain YE1162 PF00390 Malic enzyme, N-terminal domain YE1162 PF01515 Phosphate acetyl/butaryl transferase YE1162 PF03949 Malic enzyme, NAD binding domain YE1163 PF01548 YE1163 YE1163 PF02371 YE1163 YE1165 PF00196 Bacterial regulatory proteins, luxR family YE1166 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE1166 PF03466 LysR substrate binding domain YE1167 PF02639 YE1167 YE1168 PF01218 Coproporphyrinogen III oxidase YE1169 PF00583 Acetyltransferase (GNAT) family YE1170 PF00589 Phage integrase family YE1171 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YE1172 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YE1175 PF07804 HipA-like C-terminal domain YE1175 PF07805 HipA-like N-terminal domain YE1175 PF13657 HipA N-terminal domain YE1175A PF13560 Helix-turn-helix domain YE1177 PF04610 YE1177 YE1181 PF01402 Ribbon-helix-helix protein, copG family YE1182 PF07042 YE1182 YE1184 PF00583 Acetyltransferase (GNAT) family YE1185 PF04076 Bacterial OB fold (BOF) protein YE1186 PF06572 Protein of unknown function (DUF1131) YE1187 PF04261 Dyp-type peroxidase family YE1188 PF00701 Dihydrodipicolinate synthetase family YE1189 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YE1190 PF00480 ROK family YE1191 PF04074 Domain of unknown function (DUF386) YE1192 PF01380 SIS domain YE1192 PF01418 Helix-turn-helix domain, rpiR family YE1193 PF07690 Major Facilitator Superfamily YE1194 PF13531 Bacterial extracellular solute-binding protein YE1195 PF00528 Binding-protein-dependent transport system inner membrane component YE1196 PF00528 Binding-protein-dependent transport system inner membrane component YE1197 PF00005 ABC transporter YE1198 PF00291 Pyridoxal-phosphate dependent enzyme YE1199 PF00005 ABC transporter YE1199 PF02687 YE1199 YE1199 PF12704 MacB-like periplasmic core domain YE1200 PF16576 YE1200 YE1201 PF00072 Response regulator receiver domain YE1201 PF00486 Transcriptional regulatory protein, C terminal YE1202 PF00512 His Kinase A (phospho-acceptor) domain YE1202 PF00672 HAMP domain YE1202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE1203 PF00665 Integrase core domain YE1204 PF13518 Helix-turn-helix domain YE1205 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YE1206 PF00391 PEP-utilising enzyme, mobile domain YE1206 PF02896 PEP-utilising enzyme, TIM barrel domain YE1206 PF05524 PEP-utilising enzyme, N-terminal YE1207 PF00381 PTS HPr component phosphorylation site YE1208 PF00291 Pyridoxal-phosphate dependent enzyme YE1209 PF07264 Etoposide-induced protein 2 YE1210 PF04354 ZipA, C-terminal FtsZ-binding domain YE1211 PF00533 BRCA1 C Terminus (BRCT) domain YE1211 PF01653 NAD-dependent DNA ligase adenylation domain YE1211 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YE1211 PF03120 NAD-dependent DNA ligase OB-fold domain YE1211 PF12826 Helix-hairpin-helix motif YE1211 PF14520 Helix-hairpin-helix domain YE1212 PF12843 YE1212 YE1213 PF00992 Troponin YE1213 PF14282 YE1213 YE1214 PF06042 Bacterial protein of unknown function (DUF925) YE1215 PF00749 tRNA synthetases class I (E and Q), catalytic domain YE1217 PF01773 Na+ dependent nucleoside transporter N-terminus YE1217 PF07662 Na+ dependent nucleoside transporter C-terminus YE1217 PF07670 Nucleoside recognition YE1219 PF01566 YE1219 YE1220 PF10697 YE1220 YE1221 PF00248 Aldo/keto reductase family YE1222 PF00205 Thiamine pyrophosphate enzyme, central domain YE1222 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YE1222 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YE1223 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE1223 PF03466 LysR substrate binding domain YE1224 PF05232 YE1224 YE1225 PF02685 Glucokinase YE1226 PF07690 Major Facilitator Superfamily YE1227 PF00072 Response regulator receiver domain YE1227 PF04397 LytTr DNA-binding domain YE1228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE1228 PF06580 YE1228 YE1228 PF07694 5TMR of 5TMR-LYT YE1229 PF07350 Protein of unknown function (DUF1479) YE1230 PF13302 Acetyltransferase (GNAT) domain YE1231 PF00155 Aminotransferase class I and II YE1232 PF01292 Prokaryotic cytochrome b561 YE1233 PF15970 YE1233 YE1234 PF03783 Curli production assembly/transport component CsgG YE1235 PF16068 YE1235 YE1236 PF05643 Putative bacterial lipoprotein (DUF799) YE1236A PF00232 Glycosyl hydrolase family 1 YE1237 PF09900 YE1237 YE1238 PF01810 YE1238 YE1239 PF00005 ABC transporter YE1240 PF00528 Binding-protein-dependent transport system inner membrane component YE1241 PF13343 Bacterial extracellular solute-binding protein YE1242 PF13406 Transglycosylase SLT domain YE1243 PF00324 Amino acid permease YE1244 PF07969 Amidohydrolase family YE1245 PF00440 Bacterial regulatory proteins, tetR family YE1245 PF13977 Bacterial transcriptional repressor YE1246 PF07690 Major Facilitator Superfamily YE1247 PF02405 YE1247 YE1248 PF00005 ABC transporter YE1249 PF02470 YE1249 YE1250 PF03886 Protein of unknown function (DUF330) YE1251 PF13411 MerR HTH family regulatory protein YE1252 PF07859 alpha/beta hydrolase fold YE1253 PF01292 Prokaryotic cytochrome b561 YE1254 PF04264 YceI-like domain YE1255 PF00356 Bacterial regulatory proteins, lacI family YE1255 PF13377 Periplasmic binding protein-like domain YE1256 PF00367 phosphotransferase system, EIIB YE1256 PF02378 Phosphotransferase system, EIIC YE1257 PF00232 Glycosyl hydrolase family 1 YE1258 PF12977 Domain of Unknown Function with PDB structure (DUF3861) YE1259 PF03551 Transcriptional regulator PadR-like family YE1260 PF03831 PhnA protein YE1260 PF08274 PhnA Zinc-Ribbon YE1261 PF13356 Domain of unknown function (DUF4102) YE1262 PF01226 Formate/nitrite transporter YE1263 PF00005 ABC transporter YE1264 PF03379 YE1264 YE1265 PF01578 YE1265 YE1266 PF04995 YE1266 YE1267 PF03100 CcmE YE1268 PF01578 YE1268 YE1268 PF16327 YE1268 YE1269 PF08534 Redoxin YE1270 PF03918 Cytochrome C biogenesis protein YE1271 PF14559 Tetratricopeptide repeat YE1272 PF04333 YE1272 YE1274 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YE1275 PF04175 Protein of unknown function (DUF406) YE1276 PF00108 Thiolase, N-terminal domain YE1276 PF02803 Thiolase, C-terminal domain YE1277 PF00378 Enoyl-CoA hydratase/isomerase family YE1277 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YE1277 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YE1278 PF00300 Histidine phosphatase superfamily (branch 1) YE1279 PF01713 Smr domain YE1280 PF05175 Methyltransferase small domain YE1281 PF01264 Chorismate synthase YE1282 PF03411 Penicillin-insensitive murein endopeptidase YE1283 PF01925 YE1283 YE1284 PF04315 YE1284 YE1285 PF08891 YE1285 YE1286 PF01266 FAD dependent oxidoreductase YE1286 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YE1287 PF00109 Beta-ketoacyl synthase, N-terminal domain YE1287 PF02801 Beta-ketoacyl synthase, C-terminal domain YE1288 PF00990 GGDEF domain YE1288 PF08447 PAS fold YE1289 PF01177 Asp/Glu/Hydantoin racemase YE1290 PF02264 LamB porin YE1291 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YE1292 PF00232 Glycosyl hydrolase family 1 YE1293 PF02378 Phosphotransferase system, EIIC YE1294 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YE1295 PF00356 Bacterial regulatory proteins, lacI family YE1295 PF13377 Periplasmic binding protein-like domain YE1296 PF00328 Histidine phosphatase superfamily (branch 2) YE1297 PF03600 Citrate transporter YE1300 PF02683 YE1300 YE1300 PF11412 Disulphide bond corrector protein DsbC YE1300 PF13899 Thioredoxin-like YE1301 PF13462 Thioredoxin YE1302 PF00578 AhpC/TSA family YE1303 PF00155 Aminotransferase class I and II YE1303 PF00392 Bacterial regulatory proteins, gntR family YE1304 PF00892 EamA-like transporter family YE1305 PF00892 EamA-like transporter family YE1306 PF07883 Cupin domain YE1306 PF12833 Helix-turn-helix domain YE1307 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YE1307 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YE1307 PF11890 Domain of unknown function (DUF3410) YE1308 PF01118 Semialdehyde dehydrogenase, NAD binding domain YE1308 PF02774 Semialdehyde dehydrogenase, dimerisation domain YE1309 PF01416 tRNA pseudouridine synthase YE1310 PF09335 YE1310 YE1311 PF01039 Carboxyl transferase domain YE1312 PF02875 Mur ligase family, glutamate ligase domain YE1312 PF08245 Mur ligase middle domain YE1313 PF05036 Sporulation related domain YE1314 PF02674 YE1314 YE1315 PF00156 Phosphoribosyl transferase domain YE1315 PF13522 Glutamine amidotransferase domain YE1317 PF02441 Flavoprotein YE1318 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE1319 PF00528 Binding-protein-dependent transport system inner membrane component YE1320 PF00528 Binding-protein-dependent transport system inner membrane component YE1321 PF00005 ABC transporter YE1323 PF01370 NAD dependent epimerase/dehydratase family YE1323 PF08338 Domain of unknown function (DUF1731) YE1324 PF00563 EAL domain YE1325 PF12850 Calcineurin-like phosphoesterase superfamily domain YE1326 PF00293 NUDIX domain YE1326a PF01797 Transposase IS200 like YE1328 PF03611 YE1328 YE1329 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YE1330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YE1331 PF00356 Bacterial regulatory proteins, lacI family YE1331 PF13377 Periplasmic binding protein-like domain YE1333 PF01515 Phosphate acetyl/butaryl transferase YE1333 PF07085 DRTGG domain YE1333 PF13500 AAA domain YE1334 PF00871 Acetokinase family YE1335 PF04217 YE1335 YE1336 PF03887 YfbU domain YE1337 PF13419 Haloacid dehalogenase-like hydrolase YE1339 PF02080 TrkA-C domain YE1339 PF03600 Citrate transporter YE1340 PF13023 HD domain YE1341 PF00155 Aminotransferase class I and II YE1343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE1343 PF03466 LysR substrate binding domain YE1344 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YE1345 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YE1346 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YE1346 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YE1347 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin YE1348 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YE1348 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YE1349 PF00384 Molybdopterin oxidoreductase YE1349 PF01568 Molydopterin dinucleotide binding domain YE1349 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YE1349 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YE1349 PF13510 2Fe-2S iron-sulfur cluster binding domain YE1350 PF00146 NADH dehydrogenase YE1351 PF12838 4Fe-4S dicluster domain YE1352 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YE1353 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YE1354 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YE1354 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YE1355 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YE1356 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YE1358 PF06496 YE1358 YE1359 PF01548 YE1359 YE1359 PF02371 YE1359 YE1361 PF04074 Domain of unknown function (DUF386) YE1362 PF01202 Shikimate kinase YE1363 PF00106 short chain dehydrogenase YE1364 PF00356 Bacterial regulatory proteins, lacI family YE1364 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YE1365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YE1365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YE1366 PF07690 Major Facilitator Superfamily YE1367 PF03928 Domain of unknown function (DUF336) YE1368 PF00920 Dehydratase family YE1369 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YE1370 PF05199 GMC oxidoreductase YE1370A PF12318 YE1370A YE1371 PF05957 YE1371 YE1372 PF03797 Autotransporter beta-domain YE1373 PF00425 chorismate binding enzyme YE1375 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YE1375 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YE1375 PF16582 YE1375 YE1376 PF12697 Alpha/beta hydrolase family YE1377 PF00378 Enoyl-CoA hydratase/isomerase family YE1378 PF13378 Enolase C-terminal domain-like YE1379 PF00501 AMP-binding enzyme YE1379 PF13193 AMP-binding enzyme C-terminal domain YE1380 PF00199 Catalase YE1380 PF06628 Catalase-related immune-responsive YE1381 PF07437 YE1381 YE1382 PF03222 Tryptophan/tyrosine permease family YE1383 PF00994 Probable molybdopterin binding domain YE1389 PF00082 Subtilase family YE1389 PF01483 Proprotein convertase P-domain YE1389 PF08548 Peptidase M10 serralysin C terminal YE1390 PF03974 Ecotin YE1391 PF00111 2Fe-2S iron-sulfur cluster binding domain YE1392 PF00268 Ribonucleotide reductase, small chain YE1393 PF00317 Ribonucleotide reductase, all-alpha domain YE1393 PF02867 Ribonucleotide reductase, barrel domain YE1393 PF03477 ATP cone domain YE1394 PF13489 Methyltransferase domain YE1395 PF00521 DNA gyrase/topoisomerase IV, subunit A YE1395 PF03989 DNA gyrase C-terminal domain, beta-propeller YE1396 PF00072 Response regulator receiver domain YE1396 PF00512 His Kinase A (phospho-acceptor) domain YE1396 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE1396 PF09456 RcsC Alpha-Beta-Loop (ABL) YE1397 PF00072 Response regulator receiver domain YE1397 PF00196 Bacterial regulatory proteins, luxR family YE1398 PF01627 Hpt domain YE1398 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE1398 PF16359 YE1398 YE1399 PF07690 Major Facilitator Superfamily YE1402 PF00144 Beta-lactamase YE1403 PF13347 MFS/sugar transport protein YE1404 PF12706 Beta-lactamase superfamily domain YE1405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE1405 PF00672 HAMP domain YE1405 PF02743 Cache domain YE1408 PF06183 DinI-like family YE1409 PF00717 Peptidase S24-like YE1409 PF01381 Helix-turn-helix YE1410 PF06530 YE1410 YE1414 PF01609 Transposase DDE domain YE1415 PF01380 SIS domain YE1415 PF01418 Helix-turn-helix domain, rpiR family YE1416 PF00367 phosphotransferase system, EIIB YE1416 PF02378 Phosphotransferase system, EIIC YE1417 PF00232 Glycosyl hydrolase family 1 YE1418 PF00891 O-methyltransferase YE1419 PF00884 Sulfatase YE1419 PF11893 YE1419 YE1420 PF07208 Protein of unknown function (DUF1414) YE1421 PF04245 YE1421 YE1422 PF01386 Ribosomal L25p family YE1423 PF00271 Helicase conserved C-terminal domain YE1423 PF04851 Type III restriction enzyme, res subunit YE1424 PF00849 RNA pseudouridylate synthase YE1424 PF01479 S4 domain YE1425 PF07690 Major Facilitator Superfamily YE1426 PF13989 YE1426 YE1427 PF00005 ABC transporter YE1427 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YE1428 PF00528 Binding-protein-dependent transport system inner membrane component YE1428 PF12911 YE1428 YE1429 PF00528 Binding-protein-dependent transport system inner membrane component YE1430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YE1431 PF00563 EAL domain YE1431 PF12792 YE1431 YE1433 PF00877 NlpC/P60 family YE1434 PF01569 PAP2 superfamily YE1435 PF02492 CobW/HypB/UreG, nucleotide-binding domain YE1435 PF07683 Cobalamin synthesis protein cobW C-terminal domain YE1437 PF00392 Bacterial regulatory proteins, gntR family YE1437 PF07729 FCD domain YE1438 PF01232 Mannitol dehydrogenase Rossmann domain YE1438 PF08125 Mannitol dehydrogenase C-terminal domain YE1440 PF03786 D-mannonate dehydratase (UxuA) YE1441 PF01132 Elongation factor P (EF-P) OB domain YE1441 PF08207 Elongation factor P (EF-P) KOW-like domain YE1441 PF09285 Elongation factor P, C-terminal YE1442 PF03222 Tryptophan/tyrosine permease family YE1443 PF03692 YE1443 YE1444 PF00384 Molybdopterin oxidoreductase YE1444 PF01568 Molydopterin dinucleotide binding domain YE1445 PF03264 NapC/NirT cytochrome c family, N-terminal region YE1446 PF00293 NUDIX domain YE1447 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YE1447 PF00381 PTS HPr component phosphorylation site YE1448 PF00294 pfkB family carbohydrate kinase YE1449 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YE1449 PF02378 Phosphotransferase system, EIIC YE1450 PF00486 Transcriptional regulatory protein, C terminal YE1453 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YE1453 PF02753 Pili assembly chaperone PapD, C-terminal domain YE1454 PF00577 Outer membrane usher protein YE1454 PF13953 PapC C-terminal domain YE1454 PF13954 PapC N-terminal domain YE1455 PF01261 Xylose isomerase-like TIM barrel YE1456 PF03601 YE1456 YE1457 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE1457 PF03466 LysR substrate binding domain YE1458 PF00324 Amino acid permease YE1459 PF01032 FecCD transport family YE1460 PF00005 ABC transporter YE1461 PF00593 TonB dependent receptor YE1461 PF07715 TonB-dependent Receptor Plug Domain YE1463 PF00043 Glutathione S-transferase, C-terminal domain YE1463 PF02798 Glutathione S-transferase, N-terminal domain YE1464 PF12710 haloacid dehalogenase-like hydrolase YE1465 PF03171 2OG-Fe(II) oxygenase superfamily YE1465 PF14226 non-haem dioxygenase in morphine synthesis N-terminal YE1466 PF03180 NLPA lipoprotein YE1467 PF00005 ABC transporter YE1467 PF09383 NIL domain YE1468 PF00528 Binding-protein-dependent transport system inner membrane component YE1469 PF01053 Cys/Met metabolism PLP-dependent enzyme YE1470 PF00291 Pyridoxal-phosphate dependent enzyme YE1470 PF00571 CBS domain YE1471 PF00768 D-alanyl-D-alanine carboxypeptidase YE1471 PF07943 Penicillin-binding protein 5, C-terminal domain YE1472 PF03313 YE1472 YE1472 PF03315 Serine dehydratase beta chain YE1473 PF03222 Tryptophan/tyrosine permease family YE1474 PF00455 YE1474 YE1474 PF08220 DeoR-like helix-turn-helix domain YE1475 PF01791 DeoC/LacD family aldolase YE1476 PF01569 PAP2 superfamily YE1477 PF01569 PAP2 superfamily YE1478 PF02080 TrkA-C domain YE1478 PF06826 YE1478 YE1479 PF00462 Glutaredoxin YE1481 PF07214 YE1481 YE1483 PF10722 Putative bacterial sensory transduction regulator YE1484 PF13416 Bacterial extracellular solute-binding protein YE1485 PF00005 ABC transporter YE1485 PF08402 TOBE domain YE1486 PF00528 Binding-protein-dependent transport system inner membrane component YE1487 PF00528 Binding-protein-dependent transport system inner membrane component YE1490 PF05958 tRNA (Uracil-5-)-methyltransferase YE1491 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE1493 PF00528 Binding-protein-dependent transport system inner membrane component YE1494 PF00528 Binding-protein-dependent transport system inner membrane component YE1495 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE1496 PF00005 ABC transporter YE1502 PF12883 Protein of unknown function (DUF3828) YE1503 PF01370 NAD dependent epimerase/dehydratase family YE1504 PF11066 YE1504 YE1504 PF13460 NADH(P)-binding YE1505 PF01212 Beta-eliminating lyase YE1506 PF04072 Leucine carboxyl methyltransferase YE1507 PF00205 Thiamine pyrophosphate enzyme, central domain YE1507 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YE1507 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YE1509 PF00111 2Fe-2S iron-sulfur cluster binding domain YE1509 PF00175 Oxidoreductase NAD-binding domain YE1509 PF00970 Oxidoreductase FAD-binding domain YE1510 PF03063 Prismane/CO dehydrogenase family YE1511 PF03956 YE1511 YE1512 PF11398 Protein of unknown function (DUF2813) YE1513 PF04393 YE1513 YE1514 PF16576 YE1514 YE1515 PF00005 ABC transporter YE1515 PF02687 YE1515 YE1515 PF12704 MacB-like periplasmic core domain YE1516 PF00313 'Cold-shock' DNA-binding domain YE1517 PF02617 ATP-dependent Clp protease adaptor protein ClpS YE1518 PF00004 ATPase family associated with various cellular activities (AAA) YE1518 PF02861 Clp amino terminal domain YE1518 PF07724 AAA domain (Cdc48 subfamily) YE1518 PF10431 C-terminal, D2-small domain, of ClpB protein YE1519 PF01176 Translation initiation factor 1A / IF-1 YE1520 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YE1521 PF00005 ABC transporter YE1521 PF00664 ABC transporter transmembrane region YE1522 PF00005 ABC transporter YE1522 PF00664 ABC transporter transmembrane region YE1523 PF07992 Pyridine nucleotide-disulphide oxidoreductase YE1524 PF01037 AsnC family YE1524 PF13412 Winged helix-turn-helix DNA-binding YE1525 PF01580 FtsK/SpoIIIE family YE1525 PF09397 Ftsk gamma domain YE1525 PF13491 YE1525 YE1526 PF03548 Outer membrane lipoprotein carrier protein LolA YE1527 PF00004 ATPase family associated with various cellular activities (AAA) YE1527 PF12002 MgsA AAA+ ATPase C terminal YE1527 PF16193 YE1527 YE1528 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YE1528 PF02403 Seryl-tRNA synthetase N-terminal domain YE1529 PF01548 YE1529 YE1529 PF02371 YE1529 YE1530 PF07690 Major Facilitator Superfamily YE1531 PF04055 Radical SAM superfamily YE1531 PF13353 4Fe-4S single cluster domain YE1532 PF01228 Glycine radical YE1532 PF02901 Pyruvate formate lyase YE1533 PF01226 Formate/nitrite transporter YE1534 PF02624 YcaO-like family YE1535 PF00710 Asparaginase YE1536 PF04239 Protein of unknown function (DUF421) YE1537 PF00266 Aminotransferase class-V YE1538 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YE1539 PF02224 Cytidylate kinase YE1540 PF00575 S1 RNA binding domain YE1541 PF00216 Bacterial DNA-binding protein YE1542 PF00753 Metallo-beta-lactamase superfamily YE1542 PF03772 YE1542 YE1542 PF13567 YE1542 YE1543 PF00005 ABC transporter YE1543 PF00664 ABC transporter transmembrane region YE1544 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YE1545 PF07063 Domain of unknown function (DUF1338) YE1546 PF00313 'Cold-shock' DNA-binding domain YE1547 PF00313 'Cold-shock' DNA-binding domain YE1549 PF03966 Trm112p-like protein YE1550 PF02348 Cytidylyltransferase YE1551 PF03881 Fructosamine kinase YE1552 PF02698 DUF218 domain YE1553 PF13847 Methyltransferase domain YE1554 PF03882 KicB killing factor YE1554 PF17192 YE1554 YE1554 PF17193 YE1554 YE1555 PF04288 MukE-like family YE1556 PF04310 MukB N-terminal YE1556 PF13558 Putative exonuclease SbcCD, C subunit YE1556 PF16330 YE1556 YE1557 PF01471 Putative peptidoglycan binding domain YE1557 PF03734 L,D-transpeptidase catalytic domain YE1558 PF05951 YE1558 YE1559 PF00753 Metallo-beta-lactamase superfamily YE1560 PF00563 EAL domain YE1560 PF12792 YE1560 YE1561 PF00155 Aminotransferase class I and II YE1562 PF01609 Transposase DDE domain YE1562 PF13006 YE1562 YE1564 PF00152 tRNA synthetases class II (D, K and N) YE1564 PF01336 OB-fold nucleic acid binding domain YE1565 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YE1567 PF01433 Peptidase family M1 YE1567 PF11940 Domain of unknown function (DUF3458) YE1568 PF01180 Dihydroorotate dehydrogenase YE1569 PF07126 YE1569 YE1570 PF00111 2Fe-2S iron-sulfur cluster binding domain YE1570 PF03473 MOSC domain YE1570 PF03476 MOSC N-terminal beta barrel domain YE1571 PF01170 Putative RNA methylase family UPF0020 YE1571 PF02926 THUMP domain YE1571 PF10672 S-adenosylmethionine-dependent methyltransferase YE1572 PF00005 ABC transporter YE1572 PF12848 ABC transporter YE1572 PF16326 YE1572 YE1573 PF04403 YE1573 YE1574 PF02470 YE1574 YE1575 PF03886 Protein of unknown function (DUF330) YE1576 PF00109 Beta-ketoacyl synthase, N-terminal domain YE1576 PF02801 Beta-ketoacyl synthase, C-terminal domain YE1577 PF01638 HxlR-like helix-turn-helix YE1578 PF07977 FabA-like domain YE1579 PF05362 Lon protease (S16) C-terminal proteolytic domain YE1579 PF13654 AAA domain YE1580 PF06303 Organiser of macrodomain of Terminus of chromosome YE1581 PF00691 OmpA family YE1581 PF01389 OmpA-like transmembrane domain YE1582 PF03846 Cell division inhibitor SulA YE1583 PF04993 TfoX N-terminal domain YE1583 PF04994 TfoX C-terminal domain YE1584 PF12805 YE1584 YE1584 PF13515 YE1584 YE1585 PF03733 YE1585 YE1586 PF00580 UvrD/REP helicase N-terminal domain YE1586 PF12462 YE1586 YE1586 PF13361 UvrD-like helicase C-terminal domain YE1587 PF02142 MGS-like domain YE1588 PF09829 YE1588 YE1589 PF13380 CoA binding domain YE1590 PF13518 Helix-turn-helix domain YE1591 PF13276 YE1591 YE1591 PF13333 YE1591 YE1592 PF08755 Hemimethylated DNA-binding protein YccV like YE1593 PF10672 S-adenosylmethionine-dependent methyltransferase YE1595 PF07784 YE1595 YE1596 PF00708 Acylphosphatase YE1597 PF04358 DsrC like protein YE1599 PF00196 Bacterial regulatory proteins, luxR family YE1599 PF03472 Autoinducer binding domain YE1600 PF00765 Autoinducer synthetase YE1601 PF00892 EamA-like transporter family YE1602 PF00999 Sodium/hydrogen exchanger family YE1602 PF02080 TrkA-C domain YE1602 PF03471 Transporter associated domain YE1604 PF01757 YE1604 YE1605 PF04349 Periplasmic glucan biosynthesis protein, MdoG YE1606 PF00535 Glycosyl transferase family 2 YE1606a PF07119 YE1606a YE1609 PF00854 POT family YE1610 PF07690 Major Facilitator Superfamily YE1611 PF07681 YE1611 YE1612 PF03279 YE1612 YE1613 PF00072 Response regulator receiver domain YE1613 PF00196 Bacterial regulatory proteins, luxR family YE1614 PF00512 His Kinase A (phospho-acceptor) domain YE1614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE1614 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein YE1615 PF13247 4Fe-4S dicluster domain YE1616 PF03916 YE1616 YE1617 PF00384 Molybdopterin oxidoreductase YE1617 PF01568 Molydopterin dinucleotide binding domain YE1619 PF00581 Rhodanese-like domain YE1619 PF12368 YE1619 YE1620 PF01594 YE1620 YE1621 PF00196 Bacterial regulatory proteins, luxR family YE1622 PF01266 FAD dependent oxidoreductase YE1623 PF13991 YE1623 YE1624 PF06183 DinI-like family YE1625 PF01979 Amidohydrolase family YE1626 PF03992 Antibiotic biosynthesis monooxygenase YE1627 PF00575 S1 RNA binding domain YE1627 PF10150 Ribonuclease E/G family YE1627 PF12111 Polyribonucleotide phosphorylase C terminal YE1628 PF00849 RNA pseudouridylate synthase YE1628 PF01479 S4 domain YE1629 PF02545 Maf-like protein YE1630 PF02620 YE1630 YE1631 PF01783 Ribosomal L32p protein family YE1632 PF02504 Fatty acid synthesis protein YE1633 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YE1633 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YE1634 PF00698 Acyl transferase domain YE1635 PF13561 Enoyl-(Acyl carrier protein) reductase YE1636 PF00550 Phosphopantetheine attachment site YE1637 PF00109 Beta-ketoacyl synthase, N-terminal domain YE1637 PF02801 Beta-ketoacyl synthase, C-terminal domain YE1638 PF01063 Aminotransferase class IV YE1639 PF02618 YceG-like family YE1640 PF02223 Thymidylate kinase YE1641 PF09115 DNA polymerase III, delta subunit, C terminal YE1641 PF13177 DNA polymerase III, delta subunit YE1642 PF01026 TatD related DNase YE1643 PF00367 phosphotransferase system, EIIB YE1643 PF02378 Phosphotransferase system, EIIC YE1643A PF04606 YE1643A YE1644 PF05954 Phage late control gene D protein (GPD) YE1645 PF04984 Phage tail sheath protein YE1646 PF04985 YE1646 YE1647 PF10109 YE1647 YE1650 PF06995 YE1650 YE1655 PF04754 YE1655 YE1658 PF01850 PIN domain YE1659 PF04014 Antidote-toxin recognition MazE YE1661 PF02413 YE1661 YE1662 PF07484 Phage Tail Collar Domain YE1662 PF12571 YE1662 YE1663 PF09684 YE1663 YE1664 PF04865 YE1664 YE1665 PF04965 Gene 25-like lysozyme YE1666 PF04717 Phage-related baseplate assembly protein YE1667 PF02661 Fic/DOC family YE1669 PF05069 YE1669 YE1670 PF06891 YE1670 YE1672 PF13539 D-alanyl-D-alanine carboxypeptidase YE1672A PF05106 YE1672A YE1673 PF05489 Phage Tail Protein X YE1674 PF05926 YE1674 YE1675 PF05944 YE1675 YE1676 PF05125 YE1676 YE1677 PF05929 YE1677 YE1678 PF03237 Terminase-like family YE1678 PF06056 Putative ATPase subunit of terminase (gpP-like) YE1679 PF04860 Phage portal protein YE1681 PF00145 C-5 cytosine-specific DNA methylase YE1682 PF03031 NLI interacting factor-like phosphatase YE1684 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE1684 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE1686 PF05840 YE1686 YE1687 PF01258 Prokaryotic dksA/traR C4-type zinc finger YE1688 PF10809 YE1688 YE1691 PF01381 Helix-turn-helix YE1692 PF00589 Phage integrase family YE1694 PF01797 Transposase IS200 like YE1696 PF00005 ABC transporter YE1696 PF00664 ABC transporter transmembrane region YE1698 PF04055 Radical SAM superfamily YE1698 PF13394 4Fe-4S single cluster domain YE1699 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YE1699 PF12793 YE1699 YE1700 PF08501 Shikimate dehydrogenase substrate binding domain YE1701 PF01230 HIT domain YE1702 PF07233 Protein of unknown function (DUF1425) YE1703 PF13036 Protein of unknown function (DUF3897) YE1704 PF01636 Phosphotransferase enzyme family YE1705 PF00933 Glycosyl hydrolase family 3 N terminal domain YE1706 PF05728 Uncharacterised protein family (UPF0227) YE1707 PF07992 Pyridine nucleotide-disulphide oxidoreductase YE1708 PF05433 YE1708 YE1709 PF00270 DEAD/DEAH box helicase YE1709 PF00271 Helicase conserved C-terminal domain YE1709 PF02559 CarD-like/TRCF domain YE1709 PF03461 TRCF domain YE1710 PF02687 YE1710 YE1710 PF12704 MacB-like periplasmic core domain YE1711 PF00005 ABC transporter YE1712 PF02687 YE1712 YE1712 PF12704 MacB-like periplasmic core domain YE1713 PF00480 ROK family YE1714 PF02146 Sir2 family YE1715 PF01546 Peptidase family M20/M25/M40 YE1715 PF07687 Peptidase dimerisation domain YE1716 PF08007 Cupin superfamily protein YE1717 PF00672 HAMP domain YE1717 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE1717 PF08918 PhoQ Sensor YE1718 PF00072 Response regulator receiver domain YE1718 PF00486 Transcriptional regulatory protein, C terminal YE1719 PF13505 Outer membrane protein beta-barrel domain YE1720 PF00206 Lyase YE1720 PF08328 Adenylosuccinate lyase C-terminal YE1721 PF04356 Protein of unknown function (DUF489) YE1722 PF03054 tRNA methyl transferase YE1723 PF00293 NUDIX domain YE1724 PF00849 RNA pseudouridylate synthase YE1725 PF00180 Isocitrate/isopropylmalate dehydrogenase YE1726 PF00535 Glycosyl transferase family 2 YE1727 PF04932 YE1727 YE1731 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE1731 PF00672 HAMP domain YE1731 PF08447 PAS fold YE1732 PF00817 impB/mucB/samB family YE1732 PF11798 IMS family HHH motif YE1732 PF11799 impB/mucB/samB family C-terminal domain YE1732 PF13438 YE1732 YE1733 PF00717 Peptidase S24-like YE1735 PF13518 Helix-turn-helix domain YE1736 PF00665 Integrase core domain YE1738 PF05368 NmrA-like family YE1739 PF01638 HxlR-like helix-turn-helix YE1740 PF03795 YCII-related domain YE1742 PF00892 EamA-like transporter family YE1743 PF12833 Helix-turn-helix domain YE1744 PF07007 Protein of unknown function (DUF1311) YE1745 PF06411 HdeA/HdeB family YE1746 PF00990 GGDEF domain YE1746 PF08447 PAS fold YE1746 PF13426 PAS domain YE1747 PF01163 RIO1 family YE1748 PF00005 ABC transporter YE1748 PF00664 ABC transporter transmembrane region YE1749 PF00583 Acetyltransferase (GNAT) family YE1750 PF13520 Amino acid permease YE1753 PF12833 Helix-turn-helix domain YE1756 PF10964 YE1756 YE1757 PF13996 YE1757 YE1758 PF13974 YE1758 YE1759 PF10765 Protein of unknown function (DUF2591) YE1760 PF13269 YE1760 YE1761 PF00324 Amino acid permease YE1762 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YE1765 PF00313 'Cold-shock' DNA-binding domain YE1766 PF02578 Multi-copper polyphenol oxidoreductase laccase YE1767 PF00905 Penicillin binding protein transpeptidase domain YE1767 PF03717 Penicillin-binding Protein dimerisation domain YE1768 PF13847 Methyltransferase domain YE1770 PF00989 PAS fold YE1770 PF00990 GGDEF domain YE1770 PF08448 PAS fold YE1770 PF13426 PAS domain YE1771 PF00593 TonB dependent receptor YE1771 PF07715 TonB-dependent Receptor Plug Domain YE1772 PF02659 YE1772 YE1773 PF06173 YE1773 YE1775 PF03613 YE1775 YE1776 PF03609 YE1776 YE1777 PF03610 PTS system fructose IIA component YE1777 PF03830 PTS system sorbose subfamily IIB component YE1778 PF00571 CBS domain YE1778 PF03471 Transporter associated domain YE1778 PF03741 YE1778 YE1779 PF03313 YE1779 YE1779 PF03315 Serine dehydratase beta chain YE1780 PF00293 NUDIX domain YE1781 PF00425 chorismate binding enzyme YE1781 PF04715 Anthranilate synthase component I, N terminal region YE1782 PF03701 YE1782 YE1784 PF02222 ATP-grasp domain YE1785 PF00270 DEAD/DEAH box helicase YE1785 PF00271 Helicase conserved C-terminal domain YE1785 PF03880 DbpA RNA binding domain YE1786 PF07130 YebG protein YE1787 PF04266 ASCH domain YE1788 PF13995 YebF-like protein YE1789 PF00326 Prolyl oligopeptidase family YE1789 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YE1790 PF00929 Exonuclease YE1791 PF01548 YE1791 YE1791 PF02371 YE1791 YE1793 PF00561 alpha/beta hydrolase fold YE1794 PF06440 DNA polymerase III, theta subunit YE1795 PF00210 Ferritin-like domain YE1796 PF04234 CopC domain YE1797 PF05425 YE1797 YE1798 PF10709 YE1798 YE1799 PF00589 Phage integrase family YE1799 PF09003 Bacteriophage lambda integrase, N-terminal domain YE1800 PF07825 Excisionase-like protein YE1803 PF00665 Integrase core domain YE1803 PF13276 YE1803 YE1804 PF03237 Terminase-like family YE1805 PF04860 Phage portal protein YE1808 PF06616 BsuBI/PstI restriction endonuclease C-terminus YE1808 PF07669 Eco57I restriction-modification methylase YE1810 PF01527 Transposase YE1811 PF13683 YE1811 YE1813 PF16931 YE1813 YE1814 PF05449 YE1814 YE1815 PF05838 Glycosyl hydrolase 108 YE1815 PF09374 Predicted Peptidoglycan domain YE1816 PF03245 YE1816 YE1818 PF01548 YE1818 YE1818 PF02371 YE1818 YE1819 PF04383 KilA-N domain YE1820 PF13505 Outer membrane protein beta-barrel domain YE1821 PF13333 YE1821 YE1822 PF01527 Transposase YE1823 PF00665 Integrase core domain YE1823 PF13276 YE1823 YE1824 PF03237 Terminase-like family YE1825 PF13264 YE1825 YE1826 PF00665 Integrase core domain YE1826 PF13276 YE1826 YE1827 PF01527 Transposase YE1829 PF01066 CDP-alcohol phosphatidyltransferase YE1830 PF01541 GIY-YIG catalytic domain YE1830 PF02151 UvrB/uvrC motif YE1830 PF08459 UvrC Helix-hairpin-helix N-terminal YE1830 PF14520 Helix-hairpin-helix domain YE1831 PF00072 Response regulator receiver domain YE1831 PF00196 Bacterial regulatory proteins, luxR family YE1832 PF10769 YE1832 YE1833 PF06942 YE1833 YE1835 PF01381 Helix-turn-helix YE1837 PF06530 YE1837 YE1838 PF10753 YE1838 YE1839 PF16080 YE1839 YE1840 PF00959 Phage lysozyme YE1842 PF00561 alpha/beta hydrolase fold YE1843 PF00849 RNA pseudouridylate synthase YE1843 PF01479 S4 domain YE1845 PF00892 EamA-like transporter family YE1847 PF00924 Mechanosensitive ion channel YE1848 PF13417 Glutathione S-transferase, N-terminal domain YE1848 PF14834 Glutathione S-transferase, C-terminal domain YE1849 PF13302 Acetyltransferase (GNAT) domain YE1853 PF04266 ASCH domain YE1854 PF07351 YE1854 YE1855 PF00989 PAS fold YE1855 PF00990 GGDEF domain YE1855 PF08447 PAS fold YE1855 PF08448 PAS fold YE1856 PF05229 YE1856 YE1857 PF00577 Outer membrane usher protein YE1857 PF13953 PapC C-terminal domain YE1858 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YE1859 PF05229 YE1859 YE1860 PF05229 YE1860 YE1861 PF05229 YE1861 YE1862 PF07690 Major Facilitator Superfamily YE1863 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE1863 PF03466 LysR substrate binding domain YE1864 PF02470 YE1864 YE1865 PF04403 YE1865 YE1866 PF13185 GAF domain YE1867 PF04352 ProQ/FINO family YE1868 PF00595 PDZ domain (Also known as DHR or GLGF) YE1868 PF03572 Peptidase family S41 YE1868 PF11818 YE1868 YE1869 PF01435 Peptidase family M48 YE1870 PF01548 YE1870 YE1870 PF02371 YE1870 YE1873 PF03895 YadA-like C-terminal region YE1875 PF07690 Major Facilitator Superfamily YE1876 PF14583 Oligogalacturonate lyase YE1877 PF01614 Bacterial transcriptional regulator YE1877 PF09339 IclR helix-turn-helix domain YE1878 PF01471 Putative peptidoglycan binding domain YE1878 PF01510 N-acetylmuramoyl-L-alanine amidase YE1879 PF00375 Sodium:dicarboxylate symporter family YE1880 PF04307 YE1880 YE1881 PF06178 Oligogalacturonate-specific porin protein (KdgM) YE1882 PF01547 Bacterial extracellular solute-binding protein YE1883 PF00005 ABC transporter YE1883 PF08402 TOBE domain YE1884 PF00528 Binding-protein-dependent transport system inner membrane component YE1885 PF00528 Binding-protein-dependent transport system inner membrane component YE1886 PF06917 Periplasmic pectate lyase YE1887 PF13561 Enoyl-(Acyl carrier protein) reductase YE1888 PF04962 KduI/IolB family YE1889 PF07883 Cupin domain YE1890 PF13419 Haloacid dehalogenase-like hydrolase YE1891 PF14002 YE1891 YE1892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE1892 PF03466 LysR substrate binding domain YE1893 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YE1893 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YE1894 PF00378 Enoyl-CoA hydratase/isomerase family YE1894A PF03308 ArgK protein YE1895 PF01642 Methylmalonyl-CoA mutase YE1895 PF02310 B12 binding domain YE1896 PF03881 Fructosamine kinase YE1897 PF00950 YE1897 YE1898 PF00950 YE1898 YE1899 PF00005 ABC transporter YE1900 PF01297 Periplasmic solute binding protein family YE1901 PF01464 Transglycosylase SLT domain YE1902 PF01914 YE1902 YE1905 PF12680 SnoaL-like domain YE1909 PF04474 YE1909 YE1910 PF13619 YE1910 YE1912 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YE1912 PF02824 TGS domain YE1912 PF03129 Anticodon binding domain YE1912 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YE1913 PF00707 Translation initiation factor IF-3, C-terminal domain YE1913 PF05198 Translation initiation factor IF-3, N-terminal domain YE1914 PF01632 Ribosomal protein L35 YE1915 PF00453 Ribosomal protein L20 YE1916 PF01409 tRNA synthetases class II core domain (F) YE1916 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YE1917 PF01588 Putative tRNA binding domain YE1917 PF03147 Ferredoxin-fold anticodon binding domain YE1917 PF03483 B3/4 domain YE1917 PF03484 tRNA synthetase B5 domain YE1918 PF00216 Bacterial DNA-binding protein YE1919 PF01527 Transposase YE1921 PF04754 YE1921 YE1922 PF05015 Plasmid maintenance system killer protein YE1923 PF01381 Helix-turn-helix YE1924 PF04754 YE1924 YE1928 PF04221 RelB antitoxin YE1929 PF15738 YE1929 YE1930 PF02413 YE1930 YE1931 PF12571 YE1931 YE1933 PF00171 Aldehyde dehydrogenase family YE1933 PF01619 Proline dehydrogenase YE1933 PF14850 DNA-binding domain of Proline dehydrogenase YE1934 PF00474 Sodium:solute symporter family YE1935 PF01609 Transposase DDE domain YE1938 PF03239 YE1938 YE1939 PF09375 Imelysin YE1939 PF13473 Cupredoxin-like domain YE1940 PF04261 Dyp-type peroxidase family YE1941 PF03358 NADPH-dependent FMN reductase YE1942 PF01381 Helix-turn-helix YE1942 PF13239 YE1942 YE1943 PF01344 Kelch motif YE1944 PF00860 Permease family YE1945 PF01613 Flavin reductase like domain YE1946 PF00881 Nitroreductase family YE1947 PF00561 alpha/beta hydrolase fold YE1948 PF01042 Endoribonuclease L-PSP YE1949 PF00857 Isochorismatase family YE1950 PF00296 Luciferase-like monooxygenase YE1951 PF00440 Bacterial regulatory proteins, tetR family YE1951 PF08362 YcdC-like protein, C-terminal region YE1952 PF00324 Amino acid permease YE1952a PF04606 YE1952a YE1953 PF05954 Phage late control gene D protein (GPD) YE1955 PF07883 Cupin domain YE1956 PF00196 Bacterial regulatory proteins, luxR family YE1956 PF08448 PAS fold YE1957 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YE1958 PF08448 PAS fold YE1959 PF08241 Methyltransferase domain YE1962 PF00128 Alpha amylase, catalytic domain YE1964 PF00330 Aconitase family (aconitate hydratase) YE1964 PF00694 Aconitase C-terminal domain YE1965 PF00925 GTP cyclohydrolase II YE1966 PF01569 PAP2 superfamily YE1967 PF06305 YE1967 YE1968 PF13176 Tetratricopeptide repeat YE1970 PF01381 Helix-turn-helix YE1970 PF07883 Cupin domain YE1971 PF03594 YE1971 YE1972 PF07338 Protein of unknown function (DUF1471) YE1973 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YE1974 PF01253 Translation initiation factor SUI1 YE1975 PF05433 YE1975 YE1976 PF00596 Class II Aldolase and Adducin N-terminal domain YE1977 PF09932 YE1977 YE1978 PF00455 YE1978 YE1978 PF08220 DeoR-like helix-turn-helix domain YE1979 PF00923 Transaldolase YE1980 PF04328 YE1980 YE1981 PF02554 YE1981 YE1981 PF13722 YE1981 YE1982 PF00575 S1 RNA binding domain YE1982 PF00773 RNB domain YE1982 PF08206 Ribonuclease B OB domain YE1983 PF00384 Molybdopterin oxidoreductase YE1983 PF01568 Molydopterin dinucleotide binding domain YE1987 PF00633 Helix-hairpin-helix motif YE1987 PF00730 HhH-GPD superfamily base excision DNA repair protein YE1987 PF10576 Iron-sulfur binding domain of endonuclease III YE1988 PF02508 YE1988 YE1989 PF04205 FMN-binding domain YE1990 PF03116 YE1990 YE1991 PF06445 GyrI-like small molecule binding domain YE1991 PF12833 Helix-turn-helix domain YE1992 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YE1992 PF10531 SLBB domain YE1992 PF13237 4Fe-4S dicluster domain YE1992 PF13375 RnfC Barrel sandwich hybrid domain YE1993 PF04060 Putative Fe-S cluster YE1993 PF14697 4Fe-4S dicluster domain YE1994 PF02508 YE1994 YE1996 PF10754 YE1996 YE1997 PF01268 Formate--tetrahydrofolate ligase YE1998 PF00005 ABC transporter YE1998 PF00664 ABC transporter transmembrane region YE1999 PF13437 HlyD family secretion protein YE1999 PF13533 Biotin-lipoyl like YE2000 PF00005 ABC transporter YE2000 PF00664 ABC transporter transmembrane region YE2000 PF03412 Peptidase C39 family YE2001 PF02610 L-arabinose isomerase YE2001 PF11762 L-arabinose isomerase C-terminal domain YE2002 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YE2003 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YE2004 PF00005 ABC transporter YE2005 PF02653 YE2005 YE2006 PF02311 AraC-like ligand binding domain YE2006 PF12833 Helix-turn-helix domain YE2007 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YE2007 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YE2008 PF13593 SBF-like CPA transporter family (DUF4137) YE2009 PF00962 Adenosine/AMP deaminase YE2010 PF00155 Aminotransferase class I and II YE2011 PF00367 phosphotransferase system, EIIB YE2011 PF02378 Phosphotransferase system, EIIC YE2012 PF00356 Bacterial regulatory proteins, lacI family YE2012 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YE2014 PF06097 YE2014 YE2015 PF01238 Phosphomannose isomerase type I YE2016 PF00206 Lyase YE2016 PF10415 Fumarase C C-terminus YE2017 PF00196 Bacterial regulatory proteins, luxR family YE2017 PF08448 PAS fold YE2018 PF05472 DNA replication terminus site-binding protein (Ter protein) YE2019 PF13354 Beta-lactamase enzyme family YE2020 PF09851 YE2020 YE2020 PF13396 YE2020 YE2021 PF07690 Major Facilitator Superfamily YE2022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2022 PF03466 LysR substrate binding domain YE2023 PF00480 ROK family YE2024 PF13500 AAA domain YE2025 PF00654 Voltage gated chloride channel YE2025a PF06649 YE2025a YE2026 PF06932 YE2026 YE2027 PF02694 YE2027 YE2028 PF00106 short chain dehydrogenase YE2029 PF07690 Major Facilitator Superfamily YE2030 PF07338 Protein of unknown function (DUF1471) YE2032 PF02661 Fic/DOC family YE2033 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system YE2034 PF00196 Bacterial regulatory proteins, luxR family YE2034 PF08448 PAS fold YE2035 PF07690 Major Facilitator Superfamily YE2037 PF13449 Esterase-like activity of phytase YE2038 PF02798 Glutathione S-transferase, N-terminal domain YE2038 PF13410 Glutathione S-transferase, C-terminal domain YE2039 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YE2040 PF01037 AsnC family YE2040 PF13412 Winged helix-turn-helix DNA-binding YE2043 PF00528 Binding-protein-dependent transport system inner membrane component YE2044 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE2045 PF02274 Amidinotransferase YE2047 PF00795 Carbon-nitrogen hydrolase YE2048 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2048 PF03466 LysR substrate binding domain YE2049 PF03212 Pertactin YE2049 PF03797 Autotransporter beta-domain YE2050 PF00196 Bacterial regulatory proteins, luxR family YE2051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2051 PF03466 LysR substrate binding domain YE2052 PF01048 Phosphorylase superfamily YE2052 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YE2053 PF00356 Bacterial regulatory proteins, lacI family YE2053 PF13377 Periplasmic binding protein-like domain YE2054 PF00459 Inositol monophosphatase family YE2055 PF07690 Major Facilitator Superfamily YE2058 PF07520 YE2058 YE2059 PF10139 YE2059 YE2060 PF00205 Thiamine pyrophosphate enzyme, central domain YE2060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YE2060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YE2061 PF13710 ACT domain YE2062 PF13419 Haloacid dehalogenase-like hydrolase YE2063 PF13208 YE2063 YE2063 PF15615 YE2063 YE2065 PF14486 Domain of unknown function (DUF4432) YE2066 PF07690 Major Facilitator Superfamily YE2067 PF00294 pfkB family carbohydrate kinase YE2068 PF00245 Alkaline phosphatase YE2069 PF13561 Enoyl-(Acyl carrier protein) reductase YE2070 PF06445 GyrI-like small molecule binding domain YE2071 PF04463 YE2071 YE2073 PF05013 N-formylglutamate amidohydrolase YE2074 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YE2074 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YE2075 PF00027 Cyclic nucleotide-binding domain YE2075 PF13545 Crp-like helix-turn-helix domain YE2076 PF00582 Universal stress protein family YE2077 PF02233 NAD(P) transhydrogenase beta subunit YE2078 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YE2078 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YE2078 PF12769 Domain of unknown function (DUF3814) YE2080 PF07338 Protein of unknown function (DUF1471) YE2081 PF13520 Amino acid permease YE2083 PF00072 Response regulator receiver domain YE2083 PF00486 Transcriptional regulatory protein, C terminal YE2084 PF00672 HAMP domain YE2084 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE2085 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YE2087 PF00089 Trypsin YE2088 PF01381 Helix-turn-helix YE2089 PF05973 YE2089 YE2090 PF00270 DEAD/DEAH box helicase YE2090 PF00271 Helicase conserved C-terminal domain YE2090 PF04408 Helicase associated domain (HA2) YE2090 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YE2090 PF11898 YE2090 YE2091 PF05785 Rho-activating domain of cytotoxic necrotizing factor YE2092 PF02525 Flavodoxin-like fold YE2094 PF04198 Putative sugar-binding domain YE2095 PF07027 YE2095 YE2096 PF13617 YE2096 YE2097 PF11739 YE2097 YE2098 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YE2098 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YE2099 PF03891 YE2099 YE2100 PF02308 YE2100 YE2101 PF00893 Small Multidrug Resistance protein YE2102 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YE2102 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YE2102 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YE2102 PF10371 Domain of unknown function YE2102 PF12838 4Fe-4S dicluster domain YE2102 PF17147 YE2102 YE2103 PF00232 Glycosyl hydrolase family 1 YE2104 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YE2104 PF00367 phosphotransferase system, EIIB YE2104 PF02378 Phosphotransferase system, EIIC YE2105 PF00874 PRD domain YE2105 PF03123 CAT RNA binding domain YE2106 PF01171 PP-loop family YE2107 PF01544 CorA-like Mg2+ transporter protein YE2110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YE2111 PF00246 Zinc carboxypeptidase YE2112 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YE2112 PF13378 Enolase C-terminal domain-like YE2113 PF08534 Redoxin YE2114 PF00158 Sigma-54 interaction domain YE2114 PF00989 PAS fold YE2115 PF09722 YE2115 YE2116 PF08808 YE2116 YE2117 PF05128 YE2117 YE2118 PF04317 YE2118 YE2119 PF04024 YE2119 YE2120 PF06667 YE2120 YE2121 PF04012 YE2121 YE2122 PF00158 Sigma-54 interaction domain YE2122 PF02954 Bacterial regulatory protein, Fis family YE2124 PF02917 Pertussis toxin, subunit 1 YE2125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YE2126 PF00528 Binding-protein-dependent transport system inner membrane component YE2127 PF00528 Binding-protein-dependent transport system inner membrane component YE2127 PF12911 YE2127 YE2128 PF00005 ABC transporter YE2128 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YE2129 PF00005 ABC transporter YE2132 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2132 PF03466 LysR substrate binding domain YE2133 PF00854 POT family YE2134 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YE2135 PF06930 YE2135 YE2136 PF11656 YE2136 YE2137 PF00043 Glutathione S-transferase, C-terminal domain YE2137 PF02798 Glutathione S-transferase, N-terminal domain YE2138 PF08543 Phosphomethylpyrimidine kinase YE2139 PF00579 tRNA synthetases class I (W and Y) YE2139 PF01479 S4 domain YE2140 PF01243 Pyridoxamine 5'-phosphate oxidase YE2140 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YE2141 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YE2142 PF03702 Uncharacterised protein family (UPF0075) YE2143 PF05433 YE2143 YE2144 PF01047 MarR family YE2145 PF07869 YE2145 YE2146 PF13437 HlyD family secretion protein YE2146 PF13533 Biotin-lipoyl like YE2147 PF04632 YE2147 YE2148 PF00248 Aldo/keto reductase family YE2149 PF06945 YE2149 YE2150 PF00884 Sulfatase YE2150 PF08019 YE2150 YE2151 PF00440 Bacterial regulatory proteins, tetR family YE2151 PF16925 YE2151 YE2152 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YE2153 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YE2154 PF00929 Exonuclease YE2155 PF00462 Glutaredoxin YE2156 PF00877 NlpC/P60 family YE2157 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YE2157 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YE2158 PF00356 Bacterial regulatory proteins, lacI family YE2158 PF13377 Periplasmic binding protein-like domain YE2159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2159 PF03466 LysR substrate binding domain YE2160 PF07690 Major Facilitator Superfamily YE2161 PF02353 Mycolic acid cyclopropane synthetase YE2162 PF00677 Lumazine binding domain YE2163 PF01554 MatE YE2164 PF00224 Pyruvate kinase, barrel domain YE2164 PF02887 Pyruvate kinase, alpha/beta domain YE2165 PF04728 Lipoprotein leucine-zipper YE2166 PF03734 L,D-transpeptidase catalytic domain YE2167 PF02657 Fe-S metabolism associated domain YE2168 PF00266 Aminotransferase class-V YE2169 PF01458 Uncharacterized protein family (UPF0051) YE2170 PF00005 ABC transporter YE2171 PF01458 Uncharacterized protein family (UPF0051) YE2172 PF01521 Iron-sulphur cluster biosynthesis YE2173 PF03061 Thioesterase superfamily YE2174 PF01565 FAD binding domain YE2174 PF02913 FAD linked oxidases, C-terminal domain YE2174 PF13183 4Fe-4S dicluster domain YE2175 PF01594 YE2175 YE2176 PF00391 PEP-utilising enzyme, mobile domain YE2176 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YE2176 PF02896 PEP-utilising enzyme, TIM barrel domain YE2177 PF03618 YE2177 YE2178 PF00793 DAHP synthetase I family YE2180 PF00593 TonB dependent receptor YE2180 PF07715 TonB-dependent Receptor Plug Domain YE2181 PF05171 Haemin-degrading HemS YE2182 PF01497 Periplasmic binding protein YE2183 PF02696 YE2183 YE2184 PF03099 Biotin/lipoate A/B protein ligase family YE2184 PF10437 Bacterial lipoate protein ligase C-terminus YE2185 PF00877 NlpC/P60 family YE2187 PF00892 EamA-like transporter family YE2188 PF02366 YE2188 YE2189 PF01522 Polysaccharide deacetylase YE2190 PF00551 Formyl transferase YE2190 PF01370 NAD dependent epimerase/dehydratase family YE2190 PF02911 Formyl transferase, C-terminal domain YE2191 PF00535 Glycosyl transferase family 2 YE2192 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YE2193 PF00005 ABC transporter YE2194 PF00255 Glutathione peroxidase YE2195 PF01032 FecCD transport family YE2196 PF10697 YE2196 YE2198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2198 PF03466 LysR substrate binding domain YE2199 PF01131 DNA topoisomerase YE2199 PF01396 YE2199 YE2199 PF01751 Toprim domain YE2199 PF08272 Topoisomerase I zinc-ribbon-like YE2201 PF10692 Protein of unknown function (DUF2498) YE2202 PF01609 Transposase DDE domain YE2203 PF01343 Peptidase family S49 YE2203 PF08496 YE2203 YE2204 PF00106 short chain dehydrogenase YE2205 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YE2205 PF12557 Cob(I)alamin adenosyltransferase N terminal YE2206 PF00849 RNA pseudouridylate synthase YE2206 PF01479 S4 domain YE2207 PF01300 Telomere recombination YE2209 PF00425 chorismate binding enzyme YE2209 PF04715 Anthranilate synthase component I, N terminal region YE2210 PF00117 Glutamine amidotransferase class-I YE2211 PF00591 Glycosyl transferase family, a/b domain YE2211 PF02885 Glycosyl transferase family, helical bundle domain YE2212 PF00218 Indole-3-glycerol phosphate synthase YE2212 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YE2213 PF00291 Pyridoxal-phosphate dependent enzyme YE2214 PF00290 Tryptophan synthase alpha chain YE2215 PF04972 BON domain YE2216 PF03922 OmpW family YE2216A PF03692 YE2216A YE2218 PF06790 YE2218 YE2219 PF00916 YE2219 YE2219 PF01740 STAS domain YE2220 PF04279 YE2220 YE2221 PF03061 Thioesterase superfamily YE2222 PF03544 Gram-negative bacterial TonB protein C-terminal YE2222 PF16031 YE2222 YE2223 PF03795 YCII-related domain YE2225 PF00563 EAL domain YE2227 PF13091 PLD-like domain YE2227 PF13396 YE2227 YE2228 PF04269 Protein of unknown function, DUF440 YE2229 PF00005 ABC transporter YE2229 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YE2230 PF00005 ABC transporter YE2230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YE2231 PF00528 Binding-protein-dependent transport system inner membrane component YE2231 PF12911 YE2231 YE2232 PF00528 Binding-protein-dependent transport system inner membrane component YE2233 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YE2234 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YE2237 PF01914 YE2237 YE2238 PF00171 Aldehyde dehydrogenase family YE2238 PF00465 Iron-containing alcohol dehydrogenase YE2239 PF00265 Thymidine kinase YE2241 PF00816 H-NS histone family YE2242 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YE2242 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YE2242 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YE2243 PF00072 Response regulator receiver domain YE2244 PF01734 Patatin-like phospholipase YE2245 PF00583 Acetyltransferase (GNAT) family YE2246 PF02810 SEC-C motif YE2247 PF00551 Formyl transferase YE2247 PF01842 ACT domain YE2253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2254 PF03372 Endonuclease/Exonuclease/phosphatase family YE2255 PF00293 NUDIX domain YE2256 PF07383 YE2256 YE2257 PF01131 DNA topoisomerase YE2257 PF01751 Toprim domain YE2258 PF00586 AIR synthase related protein, N-terminal domain YE2258 PF02769 AIR synthase related protein, C-terminal domain YE2259 PF00881 Nitroreductase family YE2260 PF01343 Peptidase family S49 YE2261 PF00710 Asparaginase YE2262 PF00857 Isochorismatase family YE2263 PF07023 YE2263 YE2264 PF01641 SelR domain YE2265 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YE2265 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YE2266 PF13957 YE2266 YE2269 PF01263 Aldose 1-epimerase YE2270 PF01609 Transposase DDE domain YE2271 PF06629 YE2271 YE2272 PF06798 YE2272 YE2272 PF08298 PrkA AAA domain YE2273 PF04285 YE2273 YE2274 PF00892 EamA-like transporter family YE2276 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2276 PF03466 LysR substrate binding domain YE2277 PF02678 Pirin YE2277 PF05726 Pirin C-terminal cupin domain YE2278 PF00563 EAL domain YE2278 PF00990 GGDEF domain YE2278 PF08447 PAS fold YE2278 PF13185 GAF domain YE2278 PF13426 PAS domain YE2279 PF07690 Major Facilitator Superfamily YE2280 PF00842 Alanine racemase, C-terminal domain YE2280 PF01168 Alanine racemase, N-terminal domain YE2281 PF01266 FAD dependent oxidoreductase YE2282 PF04293 YE2282 YE2283 PF00392 Bacterial regulatory proteins, gntR family YE2283 PF07840 FadR C-terminal domain YE2284 PF06450 YE2284 YE2285 PF02600 Disulfide bond formation protein DsbB YE2286 PF00132 Bacterial transferase hexapeptide (six repeats) YE2286 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YE2290 PF07377 Protein of unknown function (DUF1493) YE2292 PF02413 YE2292 YE2296 PF09327 YE2296 YE2296 PF13550 YE2296 YE2298 PF07041 YE2298 YE2299 PF06805 YE2299 YE2301 PF10810 YE2301 YE2305 PF10711 YE2305 YE2308 PF03544 Gram-negative bacterial TonB protein C-terminal YE2310 PF00877 NlpC/P60 family YE2310 PF14464 Prokaryotic homologs of the JAB domain YE2311 PF05100 YE2311 YE2312 PF05939 YE2312 YE2313 PF06791 YE2313 YE2313 PF09718 YE2313 YE2314 PF08809 YE2314 YE2315 PF08748 YE2315 YE2316 PF02368 Bacterial Ig-like domain (group 2) YE2316 PF08813 YE2316 YE2317 PF13554 Bacteriophage related domain of unknown function YE2321 PF02368 Bacterial Ig-like domain (group 2) YE2324 PF13264 YE2324 YE2326 PF03592 Terminase small subunit YE2331 PF09669 YE2331 YE2334 PF00959 Phage lysozyme YE2335 PF00847 AP2 domain YE2335 PF13392 HNH endonuclease YE2336 PF06530 YE2336 YE2337 PF05766 YE2337 YE2339 PF05772 NinB protein YE2343 PF13643 YE2343 YE2345 PF06992 YE2345 YE2346 PF04492 YE2346 YE2349 PF05269 Bacteriophage CII protein YE2349A PF15943 YE2349A YE2350 PF01381 Helix-turn-helix YE2355 PF00929 Exonuclease YE2356 PF13479 YE2356 YE2361 PF05063 YE2361 YE2362 PF00145 C-5 cytosine-specific DNA methylase YE2363 PF06806 Putative excisionase (DUF1233) YE2364 PF00589 Phage integrase family YE2364 PF12167 YE2364 YE2365 PF03692 YE2365 YE2366 PF01557 Fumarylacetoacetate (FAA) hydrolase family YE2367 PF13406 Transglycosylase SLT domain YE2368 PF05166 YcgL domain YE2371 PF03775 Septum formation inhibitor MinC, C-terminal domain YE2371 PF05209 Septum formation inhibitor MinC, N-terminal domain YE2372 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YE2373 PF03776 Septum formation topological specificity factor MinE YE2374 PF00570 HRDC domain YE2374 PF01612 3'-5' exonuclease YE2375 PF00501 AMP-binding enzyme YE2375 PF13193 AMP-binding enzyme C-terminal domain YE2376 PF03843 YE2376 YE2377 PF00814 Glycoprotease family YE2378 PF00270 DEAD/DEAH box helicase YE2378 PF06733 DEAD_2 YE2378 PF13307 Helicase C-terminal domain YE2379 PF01042 Endoribonuclease L-PSP YE2380 PF00893 Small Multidrug Resistance protein YE2381 PF00893 Small Multidrug Resistance protein YE2382 PF01081 KDPG and KHG aldolase YE2383 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YE2383 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YE2384 PF01380 SIS domain YE2384 PF01418 Helix-turn-helix domain, rpiR family YE2385 PF00224 Pyruvate kinase, barrel domain YE2385 PF02887 Pyruvate kinase, alpha/beta domain YE2386 PF03279 YE2386 YE2387 PF01551 Peptidase family M23 YE2387 PF04225 Opacity-associated protein A LysM-like domain YE2388 PF01297 Periplasmic solute binding protein family YE2389 PF00005 ABC transporter YE2390 PF00950 YE2390 YE2391 PF00854 POT family YE2392 PF05491 Holliday junction DNA helicase ruvB C-terminus YE2392 PF05496 Holliday junction DNA helicase ruvB N-terminus YE2393 PF01330 RuvA N terminal domain YE2393 PF07499 RuvA, C-terminal domain YE2393 PF14520 Helix-hairpin-helix domain YE2394 PF02075 Crossover junction endodeoxyribonuclease RuvC YE2395 PF01709 Transcriptional regulator YE2396 PF00293 NUDIX domain YE2397 PF00152 tRNA synthetases class II (D, K and N) YE2397 PF01336 OB-fold nucleic acid binding domain YE2397 PF02938 GAD domain YE2398 PF00857 Isochorismatase family YE2399 PF01904 Protein of unknown function DUF72 YE2400 PF01124 MAPEG family YE2401 PF13649 Methyltransferase domain YE2402 PF08003 Protein of unknown function (DUF1698) YE2403 PF03932 CutC family YE2404 PF06185 YecM protein YE2406 PF00750 tRNA synthetases class I (R) YE2406 PF03485 Arginyl tRNA synthetase N terminal domain YE2406 PF05746 DALR anticodon binding domain YE2407 PF05860 haemagglutination activity domain YE2407 PF13332 YE2407 YE2408 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YE2408 PF08479 POTRA domain, ShlB-type YE2409 PF03023 YE2409 YE2410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YE2410a PF04337 Protein of unknown function, DUF480 YE2412 PF13302 Acetyltransferase (GNAT) domain YE2418 PF07690 Major Facilitator Superfamily YE2419 PF07273 Protein of unknown function (DUF1439) YE2420 PF02613 Nitrate reductase delta subunit YE2421 PF02811 PHP domain YE2422 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YE2423 PF03009 Glycerophosphoryl diester phosphodiesterase family YE2425 PF00990 GGDEF domain YE2426 PF00916 YE2426 YE2426 PF01740 STAS domain YE2427 PF00793 DAHP synthetase I family YE2428 PF13369 YE2428 YE2428 PF13371 Tetratricopeptide repeat YE2429 PF04247 YE2429 YE2430 PF13847 Methyltransferase domain YE2431 PF00472 RF-1 domain YE2431 PF03462 PCRF domain YE2432 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YE2432 PF01488 Shikimate / quinate 5-dehydrogenase YE2432 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YE2433 PF03550 Outer membrane lipoprotein LolB YE2434 PF00288 GHMP kinases N terminal domain YE2434 PF08544 GHMP kinases C terminal YE2435 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YE2435 PF14572 Phosphoribosyl synthetase-associated domain YE2436 PF10762 YE2436 YE2437 PF01195 Peptidyl-tRNA hydrolase YE2439 PF01926 50S ribosome-binding GTPase YE2439 PF06071 Protein of unknown function (DUF933) YE2440 PF00144 Beta-lactamase YE2441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2441 PF03466 LysR substrate binding domain YE2442 PF04391 YE2442 YE2448 PF00455 YE2448 YE2448 PF08220 DeoR-like helix-turn-helix domain YE2449 PF01380 SIS domain YE2450 PF01116 Fructose-bisphosphate aldolase class-II YE2451 PF01476 LysM domain YE2451 PF01551 Peptidase family M23 YE2454 PF02502 Ribose/Galactose Isomerase YE2454 PF12408 Ribose-5-phosphate isomerase YE2457 PF09223 YodA lipocalin-like domain YE2458 PF05962 HutD YE2459 PF01979 Amidohydrolase family YE2460 PF00392 Bacterial regulatory proteins, gntR family YE2460 PF07702 UTRA domain YE2461 PF01979 Amidohydrolase family YE2462 PF05013 N-formylglutamate amidohydrolase YE2463 PF00267 Gram-negative porin YE2465 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YE2466 PF04996 Succinylarginine dihydrolase YE2467 PF00171 Aldehyde dehydrogenase family YE2468 PF04958 Arginine N-succinyltransferase beta subunit YE2469 PF00202 Aminotransferase class-III YE2470 PF00155 Aminotransferase class I and II YE2470 PF00392 Bacterial regulatory proteins, gntR family YE2471 PF01654 YE2471 YE2472 PF02322 YE2472 YE2473 PF00672 HAMP domain YE2473 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE2473 PF07730 Histidine kinase YE2473 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YE2474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2474 PF03466 LysR substrate binding domain YE2475 PF07690 Major Facilitator Superfamily YE2476 PF04954 Siderophore-interacting protein YE2476 PF08021 Siderophore-interacting FAD-binding domain YE2477 PF01699 Sodium/calcium exchanger protein YE2478 PF02562 PhoH-like protein YE2480 PF13302 Acetyltransferase (GNAT) domain YE2481 PF13994 YE2481 YE2482 PF00535 Glycosyl transferase family 2 YE2483 PF01522 Polysaccharide deacetylase YE2483 PF14883 Hypothetical glycosyl hydrolase family 13 YE2485 PF00557 Metallopeptidase family M24 YE2485 PF01321 Creatinase/Prolidase N-terminal domain YE2486 PF06276 Ferric iron reductase FhuF-like transporter YE2486 PF11575 YE2486 YE2487 PF01411 tRNA synthetases class II (A) YE2487 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YE2488 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2488 PF03466 LysR substrate binding domain YE2489 PF03848 Tellurite resistance protein TehB YE2489 PF09313 Domain of unknown function (DUF1971) YE2490 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YE2491 PF08534 Redoxin YE2492 PF00005 ABC transporter YE2493 PF02687 YE2493 YE2493 PF12704 MacB-like periplasmic core domain YE2494 PF02687 YE2494 YE2495 PF04945 YHS domain YE2495 PF10080 YE2495 YE2496 PF10634 Fe2+ transport protein YE2497 PF03239 YE2497 YE2499 PF07690 Major Facilitator Superfamily YE2500 PF04960 Glutaminase YE2501 PF01261 Xylose isomerase-like TIM barrel YE2502 PF00596 Class II Aldolase and Adducin N-terminal domain YE2503 PF07005 Protein of unknown function, DUF1537 YE2503 PF17042 YE2503 YE2504 PF00455 YE2504 YE2504 PF08220 DeoR-like helix-turn-helix domain YE2505 PF00989 PAS fold YE2505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE2505 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain YE2505 PF17203 YE2505 YE2506 PF00072 Response regulator receiver domain YE2507 PF03390 YE2507 YE2508 PF00324 Amino acid permease YE2509 PF04343 YE2509 YE2511 PF00480 ROK family YE2512 PF07690 Major Facilitator Superfamily YE2513 PF08282 haloacid dehalogenase-like hydrolase YE2514 PF00005 ABC transporter YE2515 PF00528 Binding-protein-dependent transport system inner membrane component YE2516 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE2517 PF00291 Pyridoxal-phosphate dependent enzyme YE2518 PF02899 Phage integrase, N-terminal SAM-like domain YE2519 PF04539 Sigma-70 region 3 YE2519 PF04542 Sigma-70 region 2 YE2519 PF04545 Sigma-70, region 4 YE2521 PF00669 Bacterial flagellin N-terminal helical region YE2521 PF00700 Bacterial flagellin C-terminal helical region YE2522 PF00669 Bacterial flagellin N-terminal helical region YE2522 PF00700 Bacterial flagellin C-terminal helical region YE2523 PF00669 Bacterial flagellin N-terminal helical region YE2523 PF00700 Bacterial flagellin C-terminal helical region YE2524 PF02465 YE2524 YE2524 PF07195 YE2524 YE2524 PF07196 Flagellin hook IN motif YE2525 PF02561 Flagellar protein FliS YE2526 PF05400 Flagellar protein FliT YE2527 PF12833 Helix-turn-helix domain YE2528 PF02743 Cache domain YE2528 PF13487 HD domain YE2529 PF00730 HhH-GPD superfamily base excision DNA repair protein YE2530 PF06183 DinI-like family YE2536 PF02049 YE2536 YE2537 PF01514 Secretory protein of YscJ/FliF family YE2537 PF08345 YE2537 YE2538 PF01706 FliG C-terminal domain YE2538 PF14841 FliG middle domain YE2538 PF14842 FliG N-terminal domain YE2539 PF02108 YE2539 YE2540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YE2541 PF02050 Flagellar FliJ protein YE2542 PF02120 Flagellar hook-length control protein FliK YE2543 PF03748 YE2543 YE2544 PF01052 Surface presentation of antigens (SPOA) YE2544 PF02154 Flagellar motor switch protein FliM YE2545 PF01052 Surface presentation of antigens (SPOA) YE2545 PF16973 YE2545 YE2546 PF04347 YE2546 YE2547 PF00813 YE2547 YE2548 PF01313 YE2548 YE2549 PF01311 YE2549 YE2550 PF00669 Bacterial flagellin N-terminal helical region YE2551 PF00460 Flagella basal body rod protein YE2551 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YE2552 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YE2552 PF10135 YE2552 YE2553 PF02119 YE2553 YE2554 PF02107 YE2554 YE2555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YE2556 PF00460 Flagella basal body rod protein YE2556 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YE2557 PF00460 Flagella basal body rod protein YE2557 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YE2557 PF07559 Flagellar basal body protein FlaE YE2558 PF03963 YE2558 YE2558 PF13860 FlgD Ig-like domain YE2558 PF13861 FlgD Tudor-like domain YE2559 PF00460 Flagella basal body rod protein YE2559 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YE2560 PF00460 Flagella basal body rod protein YE2561 PF13144 SAF-like YE2562 PF04316 Anti-sigma-28 factor, FlgM YE2563 PF05130 FlgN protein YE2564 PF07979 Intimin C-type lectin domain YE2564 PF09134 Invasin, domain 3 YE2564 PF11924 Protein of unknown function (DUF3442) YE2565 PF06366 YE2565 YE2566 PF00771 FHIPEP family YE2567 PF01312 FlhB HrpN YscU SpaS Family YE2568 PF00082 Subtilase family YE2569 PF04344 Chemotaxis phosphatase, CheZ YE2570 PF00072 Response regulator receiver domain YE2571 PF00072 Response regulator receiver domain YE2571 PF01339 CheB methylesterase YE2572 PF01739 CheR methyltransferase, SAM binding domain YE2572 PF03705 CheR methyltransferase, all-alpha domain YE2573 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE2573 PF00672 HAMP domain YE2573 PF02203 Tar ligand binding domain homologue YE2575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE2575 PF00672 HAMP domain YE2575 PF02203 Tar ligand binding domain homologue YE2576 PF01584 CheW-like domain YE2577 PF01584 CheW-like domain YE2577 PF01627 Hpt domain YE2577 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE2577 PF02895 Signal transducing histidine kinase, homodimeric domain YE2577 PF09078 CheY binding YE2578 PF00691 OmpA family YE2578 PF13677 YE2578 YE2579 PF01618 YE2579 YE2580 PF05280 Flagellar transcriptional activator (FlhC) YE2581 PF05247 Flagellar transcriptional activator (FlhD) YE2583 PF00582 Universal stress protein family YE2584 PF00107 Zinc-binding dehydrogenase YE2584 PF16884 YE2584 YE2585 PF00122 E1-E2 ATPase YE2585 PF00689 Cation transporting ATPase, C-terminus YE2585 PF00690 Cation transporter/ATPase, N-terminus YE2585 PF00702 haloacid dehalogenase-like hydrolase YE2586 PF02308 YE2586 YE2588 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE2588 PF00672 HAMP domain YE2588 PF02203 Tar ligand binding domain homologue YE2589 PF10781 YE2589 YE2590 PF00313 'Cold-shock' DNA-binding domain YE2591 PF00356 Bacterial regulatory proteins, lacI family YE2591 PF13377 Periplasmic binding protein-like domain YE2592 PF00703 Glycosyl hydrolases family 2 YE2592 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YE2592 PF02837 Glycosyl hydrolases family 2, sugar binding domain YE2592 PF02929 Beta galactosidase small chain YE2592 PF16353 YE2592 YE2595 PF08240 Alcohol dehydrogenase GroES-like domain YE2595 PF13602 Zinc-binding dehydrogenase YE2596 PF10777 YE2596 YE2597 PF01037 AsnC family YE2597 PF13412 Winged helix-turn-helix DNA-binding YE2598 PF11004 YE2598 YE2599 PF14001 YE2599 YE2600 PF00328 Histidine phosphatase superfamily (branch 2) YE2601 PF00483 Nucleotidyl transferase YE2602 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YE2603 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YE2603 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YE2604 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YE2604 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YE2605 PF00294 pfkB family carbohydrate kinase YE2606 PF02653 YE2606 YE2607 PF02653 YE2607 YE2608 PF00005 ABC transporter YE2609 PF13407 Periplasmic binding protein domain YE2610 PF06167 Glucose-regulated metallo-peptidase M90 YE2612 PF00425 chorismate binding enzyme YE2613 PF07690 Major Facilitator Superfamily YE2614 PF00005 ABC transporter YE2614 PF00664 ABC transporter transmembrane region YE2615 PF00005 ABC transporter YE2615 PF00664 ABC transporter transmembrane region YE2616 PF12833 Helix-turn-helix domain YE2617 PF00501 AMP-binding enzyme YE2617 PF00550 Phosphopantetheine attachment site YE2617 PF00668 Condensation domain YE2617 PF08242 Methyltransferase domain YE2617 PF08415 YE2617 YE2618 PF00109 Beta-ketoacyl synthase, N-terminal domain YE2618 PF00550 Phosphopantetheine attachment site YE2618 PF00668 Condensation domain YE2618 PF00698 Acyl transferase domain YE2618 PF00975 Thioesterase domain YE2618 PF02801 Beta-ketoacyl synthase, C-terminal domain YE2618 PF08242 Methyltransferase domain YE2618 PF08415 YE2618 YE2618 PF08659 KR domain YE2618 PF16197 YE2618 YE2619 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YE2620 PF00975 Thioesterase domain YE2621 PF00501 AMP-binding enzyme YE2621 PF13193 AMP-binding enzyme C-terminal domain YE2622 PF00593 TonB dependent receptor YE2622 PF07715 TonB-dependent Receptor Plug Domain YE2625 PF00665 Integrase core domain YE2625 PF13276 YE2625 YE2626 PF01527 Transposase YE2628 PF03747 ADP-ribosylglycohydrolase YE2629 PF13276 YE2629 YE2629 PF13683 YE2629 YE2630 PF01527 Transposase YE2632 PF00271 Helicase conserved C-terminal domain YE2634 PF08878 YE2634 YE2634 PF13365 Trypsin-like peptidase domain YE2635 PF00753 Metallo-beta-lactamase superfamily YE2636 PF00849 RNA pseudouridylate synthase YE2637 PF09831 YE2637 YE2638 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YE2639 PF00083 Sugar (and other) transporter YE2642 PF01648 4'-phosphopantetheinyl transferase superfamily YE2644 PF03480 Bacterial extracellular solute-binding protein, family 7 YE2645 PF04290 YE2645 YE2646 PF06808 YE2646 YE2647 PF00939 Sodium:sulfate symporter transmembrane region YE2648 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase YE2649 PF03802 YE2649 YE2650 PF04223 Citrate lyase, alpha subunit (CitF) YE2651 PF03328 HpcH/HpaI aldolase/citrate lyase family YE2652 PF06857 YE2652 YE2653 PF08218 Citrate lyase ligase C-terminal domain YE2654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE2654 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain YE2654 PF17203 YE2654 YE2655 PF00072 Response regulator receiver domain YE2655 PF12431 YE2655 YE2656 PF00072 Response regulator receiver domain YE2656 PF00196 Bacterial regulatory proteins, luxR family YE2657 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE2657 PF05231 YE2657 YE2657 PF07730 Histidine kinase YE2658 PF07690 Major Facilitator Superfamily YE2659 PF13343 Bacterial extracellular solute-binding protein YE2660 PF00528 Binding-protein-dependent transport system inner membrane component YE2661 PF00005 ABC transporter YE2661 PF08402 TOBE domain YE2662 PF00072 Response regulator receiver domain YE2662 PF00196 Bacterial regulatory proteins, luxR family YE2663 PF00072 Response regulator receiver domain YE2663 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE2663 PF00512 His Kinase A (phospho-acceptor) domain YE2663 PF01627 Hpt domain YE2663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE2664 PF00419 Fimbrial protein YE2665 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YE2665 PF02753 Pili assembly chaperone PapD, C-terminal domain YE2666 PF00577 Outer membrane usher protein YE2666 PF13953 PapC C-terminal domain YE2666 PF13954 PapC N-terminal domain YE2667 PF00419 Fimbrial protein YE2668 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YE2668 PF02753 Pili assembly chaperone PapD, C-terminal domain YE2669 PF02558 Ketopantoate reductase PanE/ApbA YE2669 PF08546 Ketopantoate reductase PanE/ApbA C terminal YE2669a PF00583 Acetyltransferase (GNAT) family YE2670 PF00155 Aminotransferase class I and II YE2670 PF00392 Bacterial regulatory proteins, gntR family YE2671 PF00106 short chain dehydrogenase YE2672 PF00440 Bacterial regulatory proteins, tetR family YE2673 PF00072 Response regulator receiver domain YE2673 PF01584 CheW-like domain YE2674 PF00144 Beta-lactamase YE2675 PF00455 YE2675 YE2675 PF08220 DeoR-like helix-turn-helix domain YE2676 PF08282 haloacid dehalogenase-like hydrolase YE2677 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YE2679 PF01554 MatE YE2680 PF00764 Arginosuccinate synthase YE2681 PF04965 Gene 25-like lysozyme YE2682 PF07024 ImpE protein YE2683a PF05488 PAAR motif YE2684 PF05954 Phage late control gene D protein (GPD) YE2685 PF06744 YE2685 YE2685 PF06761 YE2685 YE2685 PF14331 YE2685 YE2686 PF00691 OmpA family YE2686 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) YE2687 PF05936 YE2687 YE2688 PF12790 Type VI secretion lipoprotein YE2689 PF05638 Protein of unknown function (DUF796) YE2690 PF05943 YE2690 YE2691 PF05591 YE2691 YE2692 PF16970 YE2692 YE2693 PF00577 Outer membrane usher protein YE2693 PF13953 PapC C-terminal domain YE2693 PF13954 PapC N-terminal domain YE2694 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YE2694 PF02753 Pili assembly chaperone PapD, C-terminal domain YE2695 PF16970 YE2695 YE2696 PF00004 ATPase family associated with various cellular activities (AAA) YE2696 PF07724 AAA domain (Cdc48 subfamily) YE2696 PF10431 C-terminal, D2-small domain, of ClpB protein YE2697 PF05947 YE2697 YE2698 PF06996 YE2698 YE2699 PF06812 YE2699 YE2700 PF00419 Fimbrial protein YE2701 PF11397 YE2701 YE2703 PF00691 OmpA family YE2704 PF08786 Domain of unknown function (DUF1795) YE2705 PF00196 Bacterial regulatory proteins, luxR family YE2707 PF02277 Phosphoribosyltransferase YE2708 PF00300 Histidine phosphatase superfamily (branch 1) YE2709 PF02654 YE2709 YE2710 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase YE2711 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YE2711 PF07685 CobB/CobQ-like glutamine amidotransferase domain YE2712 PF00005 ABC transporter YE2713 PF02361 Cobalt transport protein YE2714 PF01891 Cobalt uptake substrate-specific transmembrane region YE2715 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YE2716 PF06180 Cobalt chelatase (CbiK) YE2717 PF02571 YE2717 YE2718 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YE2719 PF01890 Cobalamin synthesis G C-terminus YE2719 PF11760 Cobalamin synthesis G N-terminal YE2719 PF11761 YE2719 YE2719a PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YE2720 PF13847 Methyltransferase domain YE2721 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YE2722 PF01888 CbiD YE2723 PF02570 Precorrin-8X methylmutase YE2724 PF03186 YE2724 YE2725 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YE2725 PF07685 CobB/CobQ-like glutamine amidotransferase domain YE2726 PF10114 YE2726 YE2726 PF12833 Helix-turn-helix domain YE2727 PF00230 Major intrinsic protein YE2728 PF00936 BMC domain YE2729 PF00936 BMC domain YE2730 PF02286 Dehydratase large subunit YE2731 PF02288 Dehydratase medium subunit YE2732 PF02287 Dehydratase small subunit YE2733 PF08841 Diol dehydratase reactivase ATPase-like domain YE2734 PF02288 Dehydratase medium subunit YE2735 PF00936 BMC domain YE2736 PF00936 BMC domain YE2737 PF06130 YE2737 YE2738 PF15953 YE2738 YE2739 PF03319 Ethanolamine utilisation protein EutN/carboxysome YE2740 PF01923 Cobalamin adenosyltransferase YE2740 PF03928 Domain of unknown function (DUF336) YE2741 PF00171 Aldehyde dehydrogenase family YE2742 PF00465 Iron-containing alcohol dehydrogenase YE2743 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YE2743 PF10531 SLBB domain YE2743 PF13375 RnfC Barrel sandwich hybrid domain YE2743 PF13534 4Fe-4S dicluster domain YE2744 PF00936 BMC domain YE2745 PF00936 BMC domain YE2746 PF10662 Ethanolamine utilisation - propanediol utilisation YE2747 PF00871 Acetokinase family YE2748 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YE2749 PF00155 Aminotransferase class I and II YE2750 PF00288 GHMP kinases N terminal domain YE2751 PF13407 Periplasmic binding protein domain YE2752 PF00005 ABC transporter YE2753 PF02653 YE2753 YE2754 PF02653 YE2754 YE2755 PF04363 YE2755 YE2756 PF13515 YE2756 YE2757 PF07993 Male sterility protein YE2758 PF00929 Exonuclease YE2758 PF08411 Exonuclease C-terminal YE2759 PF13520 Amino acid permease YE2761 PF00465 Iron-containing alcohol dehydrogenase YE2762 PF00005 ABC transporter YE2763 PF02653 YE2763 YE2764 PF01370 NAD dependent epimerase/dehydratase family YE2765 PF01634 ATP phosphoribosyltransferase YE2765 PF08029 HisG, C-terminal domain YE2766 PF00815 Histidinol dehydrogenase YE2767 PF00155 Aminotransferase class I and II YE2768 PF00475 Imidazoleglycerol-phosphate dehydratase YE2768 PF13242 HAD-hyrolase-like YE2769 PF00117 Glutamine amidotransferase class-I YE2770 PF00977 Histidine biosynthesis protein YE2771 PF00977 Histidine biosynthesis protein YE2772 PF01502 Phosphoribosyl-AMP cyclohydrolase YE2772 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YE2773 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YE2773 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YE2774 PF01609 Transposase DDE domain YE2774 PF13006 YE2774 YE2777 PF00483 Nucleotidyl transferase YE2778 PF00483 Nucleotidyl transferase YE2779 PF00571 CBS domain YE2779 PF03471 Transporter associated domain YE2779 PF03741 YE2779 YE2780 PF03606 YE2780 YE2781 PF05170 YE2781 YE2781 PF13502 YE2781 YE2782 PF00692 dUTPase YE2783 PF00485 Phosphoribulokinase / Uridine kinase family YE2784 PF10609 ParA/MinD ATPase like YE2785 PF01588 Putative tRNA binding domain YE2785 PF09334 tRNA synthetases class I (M) YE2787 PF13407 Periplasmic binding protein domain YE2788 PF08309 YE2788 YE2789 PF07690 Major Facilitator Superfamily YE2790 PF03788 YE2790 YE2791 PF04172 YE2791 YE2792 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YE2792 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YE2794 PF00390 Malic enzyme, N-terminal domain YE2794 PF03949 Malic enzyme, NAD binding domain YE2795 PF02698 DUF218 domain YE2796 PF01455 HupF/HypC family YE2797 PF01155 Hydrogenase expression/synthesis hypA family YE2798 PF00037 4Fe-4S binding domain YE2798 PF12798 4Fe-4S binding domain YE2799 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YE2800 PF00146 NADH dehydrogenase YE2801 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YE2801 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YE2802 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YE2803 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YE2803 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YE2804 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YE2804 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YE2804 PF00374 Nickel-dependent hydrogenase YE2805 PF12838 4Fe-4S dicluster domain YE2806 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YE2807 PF07450 YE2807 YE2808 PF01750 Hydrogenase maturation protease YE2809 PF12800 4Fe-4S binding domain YE2809 PF13247 4Fe-4S dicluster domain YE2810 PF00384 Molybdopterin oxidoreductase YE2810 PF01568 Molydopterin dinucleotide binding domain YE2810 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YE2811 PF00158 Sigma-54 interaction domain YE2811 PF01590 GAF domain YE2812 PF01226 Formate/nitrite transporter YE2813 PF02653 YE2813 YE2814 PF00005 ABC transporter YE2815 PF13407 Periplasmic binding protein domain YE2816 PF00356 Bacterial regulatory proteins, lacI family YE2816 PF13377 Periplasmic binding protein-like domain YE2817 PF04235 YE2817 YE2818 PF01227 GTP cyclohydrolase I YE2819 PF06779 YE2819 YE2820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2820 PF03466 LysR substrate binding domain YE2821 PF00107 Zinc-binding dehydrogenase YE2821 PF08240 Alcohol dehydrogenase GroES-like domain YE2822 PF00756 Putative esterase YE2824 PF13437 HlyD family secretion protein YE2825 PF00005 ABC transporter YE2826 PF04055 Radical SAM superfamily YE2827 PF06041 Bacterial protein of unknown function (DUF924) YE2828 PF00994 Probable molybdopterin binding domain YE2828 PF03453 MoeA N-terminal region (domain I and II) YE2828 PF03454 MoeA C-terminal region (domain IV) YE2829 PF00899 ThiF family YE2830 PF13402 Peptidase M60-like family YE2831 PF00005 ABC transporter YE2831 PF12848 ABC transporter YE2832 PF01321 Creatinase/Prolidase N-terminal domain YE2833 PF01545 Cation efflux family YE2834 PF12697 Alpha/beta hydrolase family YE2835 PF13505 Outer membrane protein beta-barrel domain YE2837 PF00892 EamA-like transporter family YE2838 PF00583 Acetyltransferase (GNAT) family YE2839 PF02469 Fasciclin domain YE2840 PF04542 Sigma-70 region 2 YE2840 PF08281 Sigma-70, region 4 YE2841 PF10099 YE2841 YE2842 PF13847 Methyltransferase domain YE2843 PF00210 Ferritin-like domain YE2844 PF01258 Prokaryotic dksA/traR C4-type zinc finger YE2845 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE2846 PF00528 Binding-protein-dependent transport system inner membrane component YE2847 PF00005 ABC transporter YE2848 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE2848 PF08447 PAS fold YE2848 PF08448 PAS fold YE2849 PF05971 Protein of unknown function (DUF890) YE2850 PF01613 Flavin reductase like domain YE2851 PF07338 Protein of unknown function (DUF1471) YE2852 PF01432 Peptidase family M3 YE2853 PF02885 Glycosyl transferase family, helical bundle domain YE2854 PF00230 Major intrinsic protein YE2855 PF00270 DEAD/DEAH box helicase YE2855 PF06733 DEAD_2 YE2855 PF13307 Helicase C-terminal domain YE2856 PF00267 Gram-negative porin YE2857 PF05426 Alginate lyase YE2858 PF00892 EamA-like transporter family YE2859 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2859 PF03466 LysR substrate binding domain YE2860 PF13561 Enoyl-(Acyl carrier protein) reductase YE2861 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein YE2862 PF00528 Binding-protein-dependent transport system inner membrane component YE2863 PF00005 ABC transporter YE2864 PF00528 Binding-protein-dependent transport system inner membrane component YE2865 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YE2866 PF00487 YE2866 YE2867 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YE2867 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YE2868 PF00581 Rhodanese-like domain YE2869 PF00005 ABC transporter YE2870 PF00005 ABC transporter YE2870 PF12399 Branched-chain amino acid ATP-binding cassette transporter YE2871 PF02653 YE2871 YE2872 PF02653 YE2872 YE2872 PF13646 HEAT repeats YE2873 PF13433 Periplasmic binding protein domain YE2874 PF07308 YE2874 YE2875 PF00528 Binding-protein-dependent transport system inner membrane component YE2876 PF00528 Binding-protein-dependent transport system inner membrane component YE2877 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein YE2878 PF00005 ABC transporter YE2879 PF04226 YE2879 YE2880 PF05076 Suppressor of fused protein (SUFU) YE2881 PF01844 HNH endonuclease YE2882 PF01928 CYTH domain YE2883 PF01565 FAD binding domain YE2883 PF09330 D-lactate dehydrogenase, membrane binding YE2884 PF00768 D-alanyl-D-alanine carboxypeptidase YE2886 PF01207 Dihydrouridine synthase (Dus) YE2889 PF00270 DEAD/DEAH box helicase YE2889 PF00271 Helicase conserved C-terminal domain YE2890 PF00440 Bacterial regulatory proteins, tetR family YE2890 PF09209 Domain of unknown function (DUF1956) YE2891 PF16576 YE2891 YE2892 PF00005 ABC transporter YE2893 PF12698 ABC-2 family transporter protein YE2894 PF12698 ABC-2 family transporter protein YE2895 PF01027 Inhibitor of apoptosis-promoting Bax1 YE2896 PF02391 MoaE protein YE2897 PF02597 ThiS family YE2898 PF01967 MoaC family YE2899 PF04055 Radical SAM superfamily YE2899 PF06463 Molybdenum Cofactor Synthesis C YE2899 PF13353 4Fe-4S single cluster domain YE2900 PF01933 Uncharacterised protein family UPF0052 YE2901 PF09905 Uncharacterized conserved protein (DUF2132) YE2902 PF00271 Helicase conserved C-terminal domain YE2902 PF02151 UvrB/uvrC motif YE2902 PF04851 Type III restriction enzyme, res subunit YE2902 PF12344 Ultra-violet resistance protein B YE2903 PF00005 ABC transporter YE2904 PF13500 AAA domain YE2905 PF08241 Methyltransferase domain YE2906 PF00155 Aminotransferase class I and II YE2907 PF04055 Radical SAM superfamily YE2907 PF06968 Biotin and Thiamin Synthesis associated domain YE2908 PF00202 Aminotransferase class-III YE2909 PF10282 Lactonase, 7-bladed beta-propeller YE2910 PF08282 haloacid dehalogenase-like hydrolase YE2911 PF00005 ABC transporter YE2911 PF03459 TOBE domain YE2912 PF00528 Binding-protein-dependent transport system inner membrane component YE2913 PF13531 Bacterial extracellular solute-binding protein YE2913A PF10766 Protein of unknown function (DUF2592) YE2914 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE2914 PF03459 TOBE domain YE2915 PF00005 ABC transporter YE2916 PF02517 CAAX protease self-immunity YE2917 PF16363 YE2917 YE2918 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YE2918 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YE2919 PF00288 GHMP kinases N terminal domain YE2919 PF08544 GHMP kinases C terminal YE2919 PF10509 Galactokinase galactose-binding signature YE2920 PF01263 Aldose 1-epimerase YE2921 PF07769 YE2921 YE2922 PF00082 Subtilase family YE2923 PF01223 DNA/RNA non-specific endonuclease YE2924 PF00300 Histidine phosphatase superfamily (branch 1) YE2925 PF00793 DAHP synthetase I family YE2926 PF01545 Cation efflux family YE2927 PF04973 YE2927 YE2928 PF02445 Quinolinate synthetase A protein YE2930 PF13174 Tetratricopeptide repeat YE2930 PF13432 Tetratricopeptide repeat YE2930 PF16331 YE2930 YE2931 PF00691 OmpA family YE2932 PF04052 TolB amino-terminal domain YE2932 PF07676 WD40-like Beta Propeller Repeat YE2933 PF06519 TolA C-terminal YE2934 PF02472 Biopolymer transport protein ExbD/TolR YE2935 PF01618 YE2935 YE2936 PF03061 Thioesterase superfamily YE2937 PF09600 YE2937 YE2938 PF02322 YE2938 YE2939 PF01654 YE2939 YE2940 PF00149 Calcineurin-like phosphoesterase YE2940 PF02872 5'-nucleotidase, C-terminal domain YE2941 PF00549 CoA-ligase YE2941 PF02629 CoA binding domain YE2942 PF00549 CoA-ligase YE2942 PF08442 ATP-grasp domain YE2943 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YE2943 PF00364 Biotin-requiring enzyme YE2943 PF02817 e3 binding domain YE2944 PF00676 Dehydrogenase E1 component YE2944 PF02779 Transketolase, pyrimidine binding domain YE2944 PF16078 YE2944 YE2944 PF16870 YE2944 YE2945 PF13085 2Fe-2S iron-sulfur cluster binding domain YE2945 PF13534 4Fe-4S dicluster domain YE2946 PF00890 FAD binding domain YE2946 PF02910 Fumarate reductase flavoprotein C-term YE2948 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YE2949 PF00285 Citrate synthase YE2950 PF01470 Pyroglutamyl peptidase YE2951 PF06166 YE2951 YE2952 PF06149 YE2952 YE2953 PF03746 LamB/YcsF family YE2954 PF02626 Allophanate hydrolase subunit 2 YE2955 PF01784 NIF3 (NGG1p interacting factor 3) YE2955A PF02682 Allophanate hydrolase subunit 1 YE2956 PF02112 YE2956 YE2957 PF00875 DNA photolyase YE2957 PF03441 FAD binding domain of DNA photolyase YE2958 PF08349 YE2958 YE2959 PF10725 YE2959 YE2960 PF03814 YE2960 YE2961 PF00122 E1-E2 ATPase YE2961 PF00702 haloacid dehalogenase-like hydrolase YE2962 PF02669 YE2962 YE2963 PF00512 His Kinase A (phospho-acceptor) domain YE2963 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE2963 PF02702 Osmosensitive K+ channel His kinase sensor domain YE2963 PF13492 GAF domain YE2963 PF13493 Domain of unknown function (DUF4118) YE2964 PF00072 Response regulator receiver domain YE2964 PF00486 Transcriptional regulatory protein, C terminal YE2965 PF00892 EamA-like transporter family YE2966 PF00353 Hemolysin-type calcium-binding repeat (2 copies) YE2967 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YE2967 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YE2967 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YE2967 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YE2968 PF03925 SeqA protein YE2969 PF12697 Alpha/beta hydrolase family YE2970 PF01402 Ribbon-helix-helix protein, copG family YE2971 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE2971 PF02203 Tar ligand binding domain homologue YE2972 PF00258 Flavodoxin YE2973 PF01475 Ferric uptake regulator family YE2974 PF00728 Glycosyl hydrolase family 20, catalytic domain YE2974 PF02838 Glycosyl hydrolase family 20, domain 2 YE2974 PF03173 Putative carbohydrate binding domain YE2974 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YE2975 PF13982 YE2975 YE2976 PF03573 outer membrane porin, OprD family YE2977 PF00749 tRNA synthetases class I (E and Q), catalytic domain YE2977 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YE2978 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YE2978 PF00367 phosphotransferase system, EIIB YE2978 PF02378 Phosphotransferase system, EIIC YE2979 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YE2980 PF01979 Amidohydrolase family YE2981 PF00480 ROK family YE2981 PF01047 MarR family YE2982 PF13242 HAD-hyrolase-like YE2982 PF13344 Haloacid dehalogenase-like hydrolase YE2983 PF00733 Asparagine synthase YE2983 PF13537 Glutamine amidotransferase domain YE2984 PF01494 FAD binding domain YE2985 PF00919 Uncharacterized protein family UPF0004 YE2985 PF01938 TRAM domain YE2985 PF04055 Radical SAM superfamily YE2986 PF02562 PhoH-like protein YE2987 PF02130 Uncharacterized protein family UPF0054 YE2988 PF00571 CBS domain YE2988 PF03471 Transporter associated domain YE2989 PF00795 Carbon-nitrogen hydrolase YE2990 PF01243 Pyridoxamine 5'-phosphate oxidase YE2991 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE2992 PF00528 Binding-protein-dependent transport system inner membrane component YE2993 PF00528 Binding-protein-dependent transport system inner membrane component YE2994 PF00005 ABC transporter YE2995 PF07295 YE2995 YE2996 PF00133 tRNA synthetases class I (I, L, M and V) YE2996 PF08264 Anticodon-binding domain of tRNA YE2996 PF13603 Leucyl-tRNA synthetase, Domain 2 YE2997 PF04390 Lipopolysaccharide-assembly YE2998 PF06144 DNA polymerase III, delta subunit YE2998 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YE2999 PF01467 Cytidylyltransferase YE3000 PF02410 Oligomerisation domain YE3001 PF02590 Predicted SPOUT methyltransferase YE3002 PF00905 Penicillin binding protein transpeptidase domain YE3002 PF03717 Penicillin-binding Protein dimerisation domain YE3003 PF01098 YE3003 YE3004 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel YE3004 PF05036 Sporulation related domain YE3005 PF00768 D-alanyl-D-alanine carboxypeptidase YE3005 PF07943 Penicillin-binding protein 5, C-terminal domain YE3006 PF04359 Protein of unknown function (DUF493) YE3007 PF03099 Biotin/lipoate A/B protein ligase family YE3008 PF04055 Radical SAM superfamily YE3008 PF16881 YE3008 YE3009 PF02416 mttA/Hcf106 family YE3010 PF00990 GGDEF domain YE3010 PF05230 YE3010 YE3011 PF02537 YE3011 YE3012 PF00313 'Cold-shock' DNA-binding domain YE3013 PF00313 'Cold-shock' DNA-binding domain YE3014 PF00196 Bacterial regulatory proteins, luxR family YE3016 PF00149 Calcineurin-like phosphoesterase YE3017 PF08971 Glycogen synthesis protein YE3018 PF03992 Antibiotic biosynthesis monooxygenase YE3019 PF00005 ABC transporter YE3019 PF00664 ABC transporter transmembrane region YE3020 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YE3021 PF00221 Aromatic amino acid lyase YE3022 PF08007 Cupin superfamily protein YE3023 PF01738 Dienelactone hydrolase family YE3024 PF00072 Response regulator receiver domain YE3024 PF00486 Transcriptional regulatory protein, C terminal YE3025 PF00512 His Kinase A (phospho-acceptor) domain YE3025 PF00672 HAMP domain YE3025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE3027 PF02627 Carboxymuconolactone decarboxylase family YE3031 PF00248 Aldo/keto reductase family YE3032 PF07110 EthD domain YE3033 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE3033 PF03466 LysR substrate binding domain YE3034 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YE3039 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) YE3040 PF01527 Transposase YE3041 PF13333 YE3041 YE3042 PF14301 YE3042 YE3043 PF01527 Transposase YE3044 PF00665 Integrase core domain YE3044 PF13276 YE3044 YE3045 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YE3045 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YE3046 PF13275 S4 domain YE3048 PF01406 tRNA synthetases class I (C) catalytic domain YE3048 PF09190 DALR domain YE3049 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YE3050 PF00149 Calcineurin-like phosphoesterase YE3051 PF00731 AIR carboxylase YE3052 PF02222 ATP-grasp domain YE3053 PF02687 YE3053 YE3054 PF00005 ABC transporter YE3055 PF13472 GDSL-like Lipase/Acylhydrolase family YE3056 PF00106 short chain dehydrogenase YE3057 PF00085 Thioredoxin YE3057 PF14559 Tetratricopeptide repeat YE3057 PF14561 Tetratricopeptide repeat YE3058 PF01145 SPFH domain / Band 7 family YE3059 PF01957 NfeD-like C-terminal, partner-binding YE3060 PF13411 MerR HTH family regulatory protein YE3061 PF00122 E1-E2 ATPase YE3061 PF00403 Heavy-metal-associated domain YE3061 PF00702 haloacid dehalogenase-like hydrolase YE3062 PF01963 YE3062 YE3063 PF04073 Aminoacyl-tRNA editing domain YE3064 PF01548 YE3064 YE3064 PF02371 YE3064 YE3066 PF00149 Calcineurin-like phosphoesterase YE3066 PF02872 5'-nucleotidase, C-terminal domain YE3067 PF07690 Major Facilitator Superfamily YE3068 PF00999 Sodium/hydrogen exchanger family YE3068 PF02254 TrkA-N domain YE3069 PF00294 pfkB family carbohydrate kinase YE3070 PF02706 Chain length determinant protein YE3071 PF16363 YE3071 YE3072 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YE3072 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YE3072 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YE3072 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YE3073 PF00483 Nucleotidyl transferase YE3073 PF01050 Mannose-6-phosphate isomerase YE3074 PF01370 NAD dependent epimerase/dehydratase family YE3075 PF16363 YE3075 YE3076 PF00534 Glycosyl transferases group 1 YE3077 PF01531 YE3077 YE3078 PF00535 Glycosyl transferase family 2 YE3081 PF00535 Glycosyl transferase family 2 YE3082 PF01943 YE3082 YE3083 PF00535 Glycosyl transferase family 2 YE3084 PF01370 NAD dependent epimerase/dehydratase family YE3085 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase YE3086 PF16363 YE3086 YE3087 PF00483 Nucleotidyl transferase YE3088 PF00762 Ferrochelatase YE3089 PF00406 Adenylate kinase YE3089 PF05191 Adenylate kinase, active site lid YE3090 PF00183 Hsp90 protein YE3090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE3091 PF02132 RecR protein YE3091 PF13662 Toprim domain YE3092 PF02575 YbaB/EbfC DNA-binding family YE3093 PF12168 YE3093 YE3093 PF12169 DNA polymerase III subunits gamma and tau domain III YE3093 PF12170 DNA polymerase III tau subunit V interacting with alpha YE3093 PF13177 DNA polymerase III, delta subunit YE3094 PF00156 Phosphoribosyl transferase domain YE3094A PF04304 YE3094A YE3095 PF07445 Primosomal replication protein priB and priC YE3096 PF10689 YE3096 YE3097 PF00924 Mechanosensitive ion channel YE3097 PF12794 YE3097 YE3097 PF12795 YE3097 YE3098 PF02635 DsrE/DsrF-like family YE3099 PF00440 Bacterial regulatory proteins, tetR family YE3099 PF08361 MAATS-type transcriptional repressor, C-terminal region YE3100 PF00529 HlyD family secretion protein YE3100 PF16576 YE3100 YE3101 PF00873 AcrB/AcrD/AcrF family YE3102 PF00874 PRD domain YE3103 PF01168 Alanine racemase, N-terminal domain YE3104 PF01676 Metalloenzyme superfamily YE3105 PF10941 YE3105 YE3106 PF10797 YE3106 YE3107 PF01197 Ribosomal protein L31 YE3108 PF00444 Ribosomal protein L36 YE3109 PF01297 Periplasmic solute binding protein family YE3110 PF00950 YE3110 YE3111 PF00005 ABC transporter YE3114 PF10757 YE3114 YE3115 PF05321 Haemolysin expression modulating protein YE3116 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YE3117 PF09619 Type III secretion system lipoprotein chaperone (YscW) YE3118 PF13622 Thioesterase-like superfamily YE3119 PF00909 Ammonium Transporter Family YE3120 PF00543 Nitrogen regulatory protein P-II YE3121 PF00005 ABC transporter YE3121 PF00664 ABC transporter transmembrane region YE3122 PF00005 ABC transporter YE3122 PF00664 ABC transporter transmembrane region YE3123 PF01037 AsnC family YE3123 PF13412 Winged helix-turn-helix DNA-binding YE3124 PF00291 Pyridoxal-phosphate dependent enzyme YE3125 PF08282 haloacid dehalogenase-like hydrolase YE3126 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YE3126 PF12793 YE3126 YE3127 PF06508 Queuosine biosynthesis protein QueC YE3128 PF13279 Thioesterase-like superfamily YE3129 PF12836 Helix-hairpin-helix motif YE3130 PF13145 PPIC-type PPIASE domain YE3130 PF13624 SurA N-terminal domain YE3131 PF00216 Bacterial DNA-binding protein YE3132 PF00004 ATPase family associated with various cellular activities (AAA) YE3132 PF02190 ATP-dependent protease La (LON) domain YE3132 PF05362 Lon protease (S16) C-terminal proteolytic domain YE3133 PF06689 ClpX C4-type zinc finger YE3133 PF07724 AAA domain (Cdc48 subfamily) YE3133 PF10431 C-terminal, D2-small domain, of ClpB protein YE3134 PF00574 Clp protease YE3135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YE3135 PF05697 Bacterial trigger factor protein (TF) YE3135 PF05698 Bacterial trigger factor protein (TF) C-terminus YE3137 PF01722 BolA-like protein YE3138 PF03923 YE3138 YE3138 PF08139 YE3138 YE3139 PF07690 Major Facilitator Superfamily YE3140 PF03502 Nucleoside-specific channel-forming protein, Tsx YE3141 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YE3141 PF06481 COX Aromatic Rich Motif YE3142 PF00115 Cytochrome C and Quinol oxidase polypeptide I YE3143 PF00510 Cytochrome c oxidase subunit III YE3144 PF03626 YE3144 YE3145 PF01040 UbiA prenyltransferase family YE3146 PF07690 Major Facilitator Superfamily YE3147 PF04461 Protein of unknown function (DUF520) YE3149 PF02558 Ketopantoate reductase PanE/ApbA YE3149 PF08546 Ketopantoate reductase PanE/ApbA C terminal YE3150 PF01965 DJ-1/PfpI family YE3151 PF02568 Thiamine biosynthesis protein (ThiI) YE3151 PF02926 THUMP domain YE3153 PF02609 Exonuclease VII small subunit YE3154 PF00348 Polyprenyl synthetase YE3155 PF02779 Transketolase, pyrimidine binding domain YE3155 PF02780 Transketolase, C-terminal domain YE3155 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YE3157 PF04608 Phosphatidylglycerophosphatase A YE3158 PF00586 AIR synthase related protein, N-terminal domain YE3158 PF02769 AIR synthase related protein, C-terminal domain YE3159 PF01029 NusB family YE3160 PF00885 6,7-dimethyl-8-ribityllumazine synthase YE3161 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YE3161 PF01872 RibD C-terminal domain YE3162 PF03477 ATP cone domain YE3163 PF02355 Protein export membrane protein YE3163 PF07549 SecD/SecF GG Motif YE3164 PF02355 Protein export membrane protein YE3164 PF07549 SecD/SecF GG Motif YE3164 PF13721 SecD export protein N-terminal TM region YE3165 PF02699 Preprotein translocase subunit YE3166 PF01702 Queuine tRNA-ribosyltransferase YE3169 PF13518 Helix-turn-helix domain YE3170 PF00665 Integrase core domain YE3172 PF02547 Queuosine biosynthesis protein YE3173 PF04336 YE3173 YE3174 PF00578 AhpC/TSA family YE3174 PF10417 C-terminal domain of 1-Cys peroxiredoxin YE3175 PF01019 Gamma-glutamyltranspeptidase YE3176 PF00106 short chain dehydrogenase YE3177 PF00128 Alpha amylase, catalytic domain YE3177 PF02903 Alpha amylase, N-terminal ig-like domain YE3178 PF00324 Amino acid permease YE3179 PF05525 YE3179 YE3181 PF00512 His Kinase A (phospho-acceptor) domain YE3181 PF00989 PAS fold YE3181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE3181 PF11808 YE3181 YE3182 PF00072 Response regulator receiver domain YE3182 PF00486 Transcriptional regulatory protein, C terminal YE3183 PF00149 Calcineurin-like phosphoesterase YE3183 PF12320 Type 5 capsule protein repressor C-terminal domain YE3184 PF13476 AAA domain YE3184 PF13558 Putative exonuclease SbcCD, C subunit YE3185 PF00480 ROK family YE3186 PF04381 Putative exonuclease, RdgC YE3187 PF06865 Protein of unknown function (DUF1255) YE3188 PF01202 Shikimate kinase YE3189 PF00593 TonB dependent receptor YE3189 PF07715 TonB-dependent Receptor Plug Domain YE3190 PF01497 Periplasmic binding protein YE3192 PF07338 Protein of unknown function (DUF1471) YE3193 PF08241 Methyltransferase domain YE3194 PF00583 Acetyltransferase (GNAT) family YE3196 PF06165 Glycosyltransferase family 36 YE3196 PF10091 Putative glucoamylase YE3196 PF17167 YE3196 YE3197 PF07238 PilZ domain YE3197 PF07317 Flagellar regulator YcgR YE3198 PF02056 Family 4 glycosyl hydrolase YE3198 PF11975 Family 4 glycosyl hydrolase C-terminal domain YE3199 PF00367 phosphotransferase system, EIIB YE3199 PF02378 Phosphotransferase system, EIIC YE3200 PF00392 Bacterial regulatory proteins, gntR family YE3200 PF07702 UTRA domain YE3201 PF00171 Aldehyde dehydrogenase family YE3202 PF00696 Amino acid kinase family YE3202 PF01472 PUA domain YE3203 PF07417 Transcriptional regulator Crl YE3204 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) YE3205 PF00156 Phosphoribosyl transferase domain YE3206 PF01546 Peptidase family M20/M25/M40 YE3206 PF07687 Peptidase dimerisation domain YE3207 PF00817 impB/mucB/samB family YE3207 PF11798 IMS family HHH motif YE3207 PF11799 impB/mucB/samB family C-terminal domain YE3208 PF01042 Endoribonuclease L-PSP YE3209 PF00291 Pyridoxal-phosphate dependent enzyme YE3210 PF08348 YE3210 YE3210 PF13309 YE3210 YE3211 PF01820 D-ala D-ala ligase N-terminus YE3211 PF07478 D-ala D-ala ligase C-terminus YE3212 PF03009 Glycerophosphoryl diester phosphodiesterase family YE3213 PF04400 YE3213 YE3214 PF02424 ApbE family YE3215 PF00111 2Fe-2S iron-sulfur cluster binding domain YE3215 PF00175 Oxidoreductase NAD-binding domain YE3215 PF00970 Oxidoreductase FAD-binding domain YE3216 PF02508 YE3216 YE3217 PF02508 YE3217 YE3218 PF04205 FMN-binding domain YE3219 PF03116 YE3219 YE3220 PF05896 YE3220 YE3220 PF11973 YE3220 YE3221 PF03734 L,D-transpeptidase catalytic domain YE3222 PF13230 Glutamine amidotransferases class-II YE3223 PF13580 SIS domain YE3224 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YE3224 PF02770 Acyl-CoA dehydrogenase, middle domain YE3224 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YE3224 PF09317 YE3224 YE3226 PF05860 haemagglutination activity domain YE3226 PF13018 YE3226 YE3227 PF08479 POTRA domain, ShlB-type YE3228 PF01636 Phosphotransferase enzyme family YE3230 PF01008 Initiation factor 2 subunit family YE3231 PF03079 ARD/ARD' family YE3233 PF00596 Class II Aldolase and Adducin N-terminal domain YE3234 PF00155 Aminotransferase class I and II YE3235 PF00795 Carbon-nitrogen hydrolase YE3237 PF07690 Major Facilitator Superfamily YE3238 PF03591 YE3238 YE3239 PF05437 YE3239 YE3240 PF01047 MarR family YE3241 PF02321 Outer membrane efflux protein YE3242 PF00529 HlyD family secretion protein YE3242 PF16576 YE3242 YE3243 PF07690 Major Facilitator Superfamily YE3244 PF00588 SpoU rRNA Methylase family YE3244 PF08032 RNA 2'-O ribose methyltransferase substrate binding YE3245 PF00085 Thioredoxin YE3246 PF03942 YE3246 YE3247 PF00583 Acetyltransferase (GNAT) family YE3247 PF13380 CoA binding domain YE3247 PF13549 ATP-grasp domain YE3247 PF13607 Succinyl-CoA ligase like flavodoxin domain YE3248 PF13091 PLD-like domain YE3249 PF13518 Helix-turn-helix domain YE3250 PF13276 YE3250 YE3250 PF13333 YE3250 YE3251 PF10043 YE3251 YE3252 PF13242 HAD-hyrolase-like YE3253 PF00005 ABC transporter YE3253 PF09383 NIL domain YE3254 PF00528 Binding-protein-dependent transport system inner membrane component YE3255 PF03180 NLPA lipoprotein YE3256 PF16358 YE3256 YE3257 PF01980 Uncharacterised protein family UPF0066 YE3258 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YE3258 PF03129 Anticodon binding domain YE3258 PF04073 Aminoacyl-tRNA editing domain YE3259 PF04170 NlpE N-terminal domain YE3259 PF17185 YE3259 YE3260 PF00472 RF-1 domain YE3261 PF07152 YaeQ protein YE3262 PF06786 YE3262 YE3263 PF07073 Modulator of Rho-dependent transcription termination (ROF) YE3264 PF00034 Cytochrome c YE3265 PF01171 PP-loop family YE3265 PF09179 TilS substrate binding domain YE3265 PF11734 TilS substrate C-terminal domain YE3266 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YE3267 PF01276 Orn/Lys/Arg decarboxylase, major domain YE3267 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YE3267 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YE3268 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YE3269 PF01336 OB-fold nucleic acid binding domain YE3269 PF02811 PHP domain YE3269 PF07733 Bacterial DNA polymerase III alpha subunit YE3269 PF14579 Helix-hairpin-helix motif YE3270 PF01351 Ribonuclease HII YE3271 PF02684 YE3271 YE3272 PF00132 Bacterial transferase hexapeptide (six repeats) YE3272 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YE3273 PF07977 FabA-like domain YE3274 PF00132 Bacterial transferase hexapeptide (six repeats) YE3274 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YE3275 PF03938 Outer membrane protein (OmpH-like) YE3276 PF01103 Surface antigen YE3276 PF07244 Surface antigen variable number repeat YE3277 PF00595 PDZ domain (Also known as DHR or GLGF) YE3277 PF02163 Peptidase family M50 YE3278 PF01148 Cytidylyltransferase family YE3279 PF01255 Putative undecaprenyl diphosphate synthase YE3280 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YE3280 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal YE3280 PF13288 DXP reductoisomerase C-terminal domain YE3281 PF01765 Ribosome recycling factor YE3282 PF00696 Amino acid kinase family YE3283 PF00889 Elongation factor TS YE3284 PF00318 Ribosomal protein S2 YE3285 PF00557 Metallopeptidase family M24 YE3286 PF01842 ACT domain YE3286 PF01909 Nucleotidyltransferase domain YE3286 PF01966 HD domain YE3286 PF08335 GlnD PII-uridylyltransferase YE3287 PF00132 Bacterial transferase hexapeptide (six repeats) YE3287 PF14602 Hexapeptide repeat of succinyl-transferase YE3287 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YE3288 PF11944 YE3288 YE3289 PF00258 Flavodoxin YE3290 PF00849 RNA pseudouridylate synthase YE3291 PF04287 tRNA pseudouridine synthase C YE3292 PF00665 Integrase core domain YE3293 PF13518 Helix-turn-helix domain YE3294 PF07348 Syd protein (SUKH-2) YE3295 PF14489 QueF-like protein YE3295 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YE3296 PF03641 Possible lysine decarboxylase YE3296 PF11892 Domain of unknown function (DUF3412) YE3296 PF14793 Domain of unknown function (DUF4478) YE3297 PF01367 5'-3' exonuclease, C-terminal SAM fold YE3297 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YE3298 PF01728 FtsJ-like methyltransferase YE3299 PF04241 YE3299 YE3300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE3300 PF03466 LysR substrate binding domain YE3302 PF06004 Bacterial protein of unknown function (DUF903) YE3303 PF00266 Aminotransferase class-V YE3304 PF02657 Fe-S metabolism associated domain YE3305 PF00899 ThiF family YE3306 PF03562 MltA specific insert domain YE3306 PF06725 3D domain YE3307 PF01520 N-acetylmuramoyl-L-alanine amidase YE3307 PF11741 AMIN domain YE3308 PF00583 Acetyltransferase (GNAT) family YE3308 PF00696 Amino acid kinase family YE3309 PF13538 UvrD-like helicase C-terminal domain YE3309 PF13604 AAA domain YE3310 PF00580 UvrD/REP helicase N-terminal domain YE3310 PF13361 UvrD-like helicase C-terminal domain YE3311 PF00675 Insulinase (Peptidase family M16) YE3311 PF05193 Peptidase M16 inactive domain YE3311 PF16187 YE3311 YE3312 PF04257 Exodeoxyribonuclease V, gamma subunit YE3313 PF12528 YE3313 YE3314 PF10713 YE3314 YE3317 PF00303 Thymidylate synthase YE3318 PF01790 YE3318 YE3319 PF00391 PEP-utilising enzyme, mobile domain YE3319 PF01590 GAF domain YE3319 PF02896 PEP-utilising enzyme, TIM barrel domain YE3319 PF05524 PEP-utilising enzyme, N-terminal YE3320 PF00293 NUDIX domain YE3322 PF02976 DNA mismatch repair enzyme MutH YE3323 PF03741 YE3323 YE3324 PF00248 Aldo/keto reductase family YE3325 PF01548 YE3325 YE3325 PF02371 YE3325 YE3326 PF07690 Major Facilitator Superfamily YE3327 PF00501 AMP-binding enzyme YE3327 PF01553 Acyltransferase YE3327 PF13193 AMP-binding enzyme C-terminal domain YE3330 PF00384 Molybdopterin oxidoreductase YE3330 PF01568 Molydopterin dinucleotide binding domain YE3331 PF00356 Bacterial regulatory proteins, lacI family YE3331 PF13377 Periplasmic binding protein-like domain YE3332 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YE3332 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YE3333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE3333 PF03466 LysR substrate binding domain YE3334 PF07690 Major Facilitator Superfamily YE3335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE3335 PF03466 LysR substrate binding domain YE3336 PF00753 Metallo-beta-lactamase superfamily YE3337 PF01323 DSBA-like thioredoxin domain YE3338 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE3338 PF00672 HAMP domain YE3338 PF02203 Tar ligand binding domain homologue YE3340 PF00486 Transcriptional regulatory protein, C terminal YE3341 PF01478 Type IV leader peptidase family YE3341 PF06750 YE3341 YE3343 PF05134 Type II secretion system (T2SS), protein L YE3344 PF03934 Type II secretion system (T2SS), protein K YE3344A PF11612 Type II secretion system (T2SS), protein J YE3345 PF02501 Type II secretion system (T2SS), protein I YE3345 PF07963 Prokaryotic N-terminal methylation motif YE3346 PF08334 Type II secretion system (T2SS), protein G YE3346 PF13544 YE3346 YE3347 PF00482 Type II secretion system (T2SS), protein F YE3348 PF00437 Type II/IV secretion system protein YE3349 PF00263 YE3349 YE3349 PF03958 Bacterial type II/III secretion system short domain YE3350 PF11356 Type IV pilus biogenesis YE3352 PF00484 Carbonic anhydrase YE3353 PF01638 HxlR-like helix-turn-helix YE3354 PF13561 Enoyl-(Acyl carrier protein) reductase YE3355 PF13591 MerR HTH family regulatory protein YE3356 PF00226 DnaJ domain YE3356 PF01556 DnaJ C terminal domain YE3357 PF00356 Bacterial regulatory proteins, lacI family YE3357 PF13377 Periplasmic binding protein-like domain YE3358 PF07690 Major Facilitator Superfamily YE3359 PF01055 Glycosyl hydrolases family 31 YE3359 PF13802 Galactose mutarotase-like YE3359 PF17137 YE3359 YE3360 PF09391 Protein of unknown function (DUF2000) YE3361 PF01037 AsnC family YE3361 PF13412 Winged helix-turn-helix DNA-binding YE3362 PF00990 GGDEF domain YE3362 PF08448 PAS fold YE3363 PF13474 SnoaL-like domain YE3364 PF03960 ArsC family YE3365 PF02040 YE3365 YE3366 PF01022 Bacterial regulatory protein, arsR family YE3367 PF02661 Fic/DOC family YE3371 PF09669 YE3371 YE3373 PF00589 Phage integrase family YE3374 PF00152 tRNA synthetases class II (D, K and N) YE3374 PF01336 OB-fold nucleic acid binding domain YE3378 PF01368 DHH family YE3378 PF02272 DHHA1 domain YE3379 PF10411 Disulfide bond isomerase protein N-terminus YE3379 PF13098 Thioredoxin-like domain YE3380 PF00589 Phage integrase family YE3380 PF02899 Phage integrase, N-terminal SAM-like domain YE3381 PF00258 Flavodoxin YE3382 PF06123 YE3382 YE3383 PF00512 His Kinase A (phospho-acceptor) domain YE3383 PF00672 HAMP domain YE3383 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE3383 PF14827 Sensory domain of two-component sensor kinase YE3384 PF00072 Response regulator receiver domain YE3384 PF00486 Transcriptional regulatory protein, C terminal YE3385 PF07254 YE3385 YE3386 PF03937 Flavinator of succinate dehydrogenase YE3387 PF01571 Aminomethyltransferase folate-binding domain YE3388 PF03006 YE3388 YE3389 PF13023 HD domain YE3390 PF13924 YE3390 YE3391 PF02347 Glycine cleavage system P-protein YE3392 PF01597 Glycine cleavage H-protein YE3393 PF01571 Aminomethyltransferase folate-binding domain YE3393 PF08669 Glycine cleavage T-protein C-terminal barrel domain YE3394 PF01494 FAD binding domain YE3395 PF01494 FAD binding domain YE3396 PF00557 Metallopeptidase family M24 YE3396 PF05195 Aminopeptidase P, N-terminal domain YE3397 PF03695 Uncharacterised protein family (UPF0149) YE3398 PF05164 Cell division protein ZapA YE3399 PF01812 5-formyltetrahydrofolate cyclo-ligase family YE3400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YE3400 PF01842 ACT domain YE3400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YE3401 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YE3402 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE3402 PF03466 LysR substrate binding domain YE3403 PF04402 Protein of unknown function (DUF541) YE3405 PF01810 YE3405 YE3406 PF00924 Mechanosensitive ion channel YE3406 PF05552 Conserved TM helix YE3407 PF05598 YE3407 YE3407 PF13751 YE3407 YE3409 PF05261 TraM protein, DNA-binding YE3411 PF01464 Transglycosylase SLT domain YE3412 PF05598 YE3412 YE3412 PF13751 YE3412 YE3413 PF01116 Fructose-bisphosphate aldolase class-II YE3414 PF00162 Phosphoglycerate kinase YE3415 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YE3415 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YE3416 PF00456 Transketolase, thiamine diphosphate binding domain YE3416 PF02779 Transketolase, pyrimidine binding domain YE3416 PF02780 Transketolase, C-terminal domain YE3417 PF01435 Peptidase family M48 YE3418 PF00355 Rieske [2Fe-2S] domain YE3419 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YE3419 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YE3421 PF00438 S-adenosylmethionine synthetase, N-terminal domain YE3421 PF02772 S-adenosylmethionine synthetase, central domain YE3421 PF02773 S-adenosylmethionine synthetase, C-terminal domain YE3422 PF04143 YE3422 YE3422A PF04143 YE3422A YE3423 PF01022 Bacterial regulatory protein, arsR family YE3424 PF10263 YE3424 YE3425 PF04231 Endonuclease I YE3426 PF04452 RNA methyltransferase YE3427 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YE3427 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YE3428 PF02622 Uncharacterized ACR, COG1678 YE3429 PF03652 Uncharacterised protein family (UPF0081) YE3430 PF00795 Carbon-nitrogen hydrolase YE3431 PF04371 Porphyromonas-type peptidyl-arginine deiminase YE3432 PF00437 Type II/IV secretion system protein YE3433 PF01168 Alanine racemase, N-terminal domain YE3434 PF03807 NADP oxidoreductase coenzyme F420-dependent YE3434 PF14748 Pyrroline-5-carboxylate reductase dimerisation YE3435 PF02325 YE3435 YE3436 PF02594 Uncharacterised ACR, YggU family COG1872 YE3437 PF01725 Ham1 family YE3438 PF04055 Radical SAM superfamily YE3438 PF06969 HemN C-terminal domain YE3439 PF11101 YE3439 YE3440 PF04960 Glutaminase YE3441 PF04320 YE3441 YE3442 PF02390 Putative methyltransferase YE3443 PF00633 Helix-hairpin-helix motif YE3443 PF00730 HhH-GPD superfamily base excision DNA repair protein YE3443 PF10576 Iron-sulfur binding domain of endonuclease III YE3443 PF14815 NUDIX domain YE3444 PF04362 Bacterial Fe(2+) trafficking YE3445 PF01464 Transglycosylase SLT domain YE3445 PF11873 Domain of unknown function (DUF3393) YE3446 PF01925 YE3446 YE3447 PF01276 Orn/Lys/Arg decarboxylase, major domain YE3447 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YE3447 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YE3450 PF00589 Phage integrase family YE3451 PF07514 Putative helicase YE3451 PF07515 Protein of unknown function (DUF1528) YE3454 PF04829 YE3454 YE3454 PF13332 YE3454 YE3458 PF06924 Protein of unknown function (DUF1281) YE3459 PF06755 YE3459 YE3460 PF08401 YE3460 YE3461 PF12834 YE3461 YE3461 PF12835 Integrase YE3462 PF04245 YE3462 YE3463 PF04607 Region found in RelA / SpoT proteins YE3465 PF07916 YE3465 YE3467 PF06834 YE3467 YE3468 PF07511 YE3468 YE3472 PF01022 Bacterial regulatory protein, arsR family YE3472A PF06953 Arsenical resistance operon trans-acting repressor ArsD YE3473 PF02374 Anion-transporting ATPase YE3474 PF02040 YE3474 YE3475 PF03960 ArsC family YE3476 PF01609 Transposase DDE domain YE3477 PF03358 NADPH-dependent FMN reductase YE3478 PF12840 Helix-turn-helix domain YE3479 PF03773 YE3479 YE3480 PF01845 CcdB protein YE3481 PF07362 Post-segregation antitoxin CcdA YE3482 PF11130 YE3482 YE3484 PF03743 Bacterial conjugation TrbI-like protein YE3485 PF11920 YE3485 YE3486 PF11444 YE3486 YE3487 PF11990 YE3487 YE3488 PF11190 YE3488 YE3489 PF11660 YE3489 YE3490 PF09686 YE3490 YE3492 PF14348 YE3492 YE3493 PF12696 TraM recognition site of TraD and TraG YE3494 PF11072 YE3494 YE3494A PF01464 Transglycosylase SLT domain YE3496A PF01381 Helix-turn-helix YE3497 PF04754 YE3497 YE3498 PF04917 YE3498 YE3499 PF01478 Type IV leader peptidase family YE3500 PF08805 PilS N terminal YE3501 PF00482 Type II secretion system (T2SS), protein F YE3502 PF00437 Type II/IV secretion system protein YE3503 PF06864 YE3503 YE3504 PF00263 YE3504 YE3504 PF07655 YE3504 YE3505 PF07419 PilM YE3506 PF10671 Toxin co-regulated pilus biosynthesis protein Q YE3507 PF01724 Domain of unknown function DUF29 YE3508 PF10387 Protein of unknown function (DUF2442) YE3509 PF12101 YE3509 YE3510 PF08900 YE3510 YE3511 PF13730 YE3511 YE3512 PF11198 YE3512 YE3513 PF02195 ParB-like nuclease domain YE3514 PF00772 DnaB-like helicase N terminal domain YE3514 PF03796 DnaB-like helicase C terminal domain YE3515 PF13614 AAA domain YE3520 PF07514 Putative helicase YE3520 PF07515 Protein of unknown function (DUF1528) YE3524 PF01548 YE3524 YE3524 PF02371 YE3524 YE3525 PF13683 YE3525 YE3526 PF13520 Amino acid permease YE3527 PF01276 Orn/Lys/Arg decarboxylase, major domain YE3527 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YE3527 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YE3528 PF02321 Outer membrane efflux protein YE3529 PF04632 YE3529 YE3530 PF13437 HlyD family secretion protein YE3530 PF13533 Biotin-lipoyl like YE3531 PF17090 YE3531 YE3532 PF01979 Amidohydrolase family YE3535 PF06511 Invasion plasmid antigen IpaD YE3537 PF04888 YE3537 YE3538 PF07720 Tetratricopeptide repeat YE3539 PF01312 FlhB HrpN YscU SpaS Family YE3540 PF01311 YE3540 YE3541 PF01313 YE3541 YE3542 PF00813 YE3542 YE3542A PF01052 Surface presentation of antigens (SPOA) YE3544 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YE3545 PF03519 Invasion protein B family YE3546 PF00771 FHIPEP family YE3547 PF07201 HrpJ-like domain YE3548 PF00263 YE3548 YE3548 PF03958 Bacterial type II/III secretion system short domain YE3549 PF12833 Helix-turn-helix domain YE3550 PF09480 Type III secretion system protein PrgH-EprH (PrgH) YE3553 PF01514 Secretory protein of YscJ/FliF family YE3554 PF09482 YE3554 YE3557 PF01464 Transglycosylase SLT domain YE3559 PF09619 Type III secretion system lipoprotein chaperone (YscW) YE3560 PF00072 Response regulator receiver domain YE3560 PF00196 Bacterial regulatory proteins, luxR family YE3561 PF00072 Response regulator receiver domain YE3561 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE3561 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE3561A PF01627 Hpt domain YE3562 PF01292 Prokaryotic cytochrome b561 YE3564 PF11356 Type IV pilus biogenesis YE3565 PF00263 YE3565 YE3565 PF03958 Bacterial type II/III secretion system short domain YE3566 PF00437 Type II/IV secretion system protein YE3567 PF00482 Type II secretion system (T2SS), protein F YE3568 PF08334 Type II secretion system (T2SS), protein G YE3568 PF13633 Prokaryotic N-terminal methylation site YE3569 PF07963 Prokaryotic N-terminal methylation motif YE3569 PF12019 Type II transport protein GspH YE3570 PF02501 Type II secretion system (T2SS), protein I YE3570 PF13633 Prokaryotic N-terminal methylation site YE3570a PF11612 Type II secretion system (T2SS), protein J YE3570a PF13633 Prokaryotic N-terminal methylation site YE3571 PF03934 Type II secretion system (T2SS), protein K YE3572 PF05134 Type II secretion system (T2SS), protein L YE3573 PF04612 Type II secretion system (T2SS), protein M YE3574 PF01478 Type IV leader peptidase family YE3574 PF06750 YE3574 YE3575 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) YE3576 PF02839 Carbohydrate binding domain YE3576 PF03067 Chitin binding domain YE3577 PF03929 YE3577 YE3578 PF00072 Response regulator receiver domain YE3578 PF00196 Bacterial regulatory proteins, luxR family YE3579 PF00072 Response regulator receiver domain YE3579 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE3579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE3581 PF11903 YE3581 YE3582 PF00557 Metallopeptidase family M24 YE3583 PF00005 ABC transporter YE3584 PF01032 FecCD transport family YE3585 PF01032 FecCD transport family YE3586 PF01497 Periplasmic binding protein YE3587 PF00891 O-methyltransferase YE3588 PF00083 Sugar (and other) transporter YE3589 PF00356 Bacterial regulatory proteins, lacI family YE3589 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YE3590 PF01156 Inosine-uridine preferring nucleoside hydrolase YE3591 PF01895 PhoU domain YE3591 PF02690 YE3591 YE3592 PF00857 Isochorismatase family YE3594 PF00083 Sugar (and other) transporter YE3594 PF08946 Osmosensory transporter coiled coil YE3595 PF00873 AcrB/AcrD/AcrF family YE3596 PF16576 YE3596 YE3597 PF00563 EAL domain YE3597 PF00989 PAS fold YE3597 PF00990 GGDEF domain YE3597 PF05228 YE3597 YE3598 PF11769 YE3598 YE3599 PF02110 Hydroxyethylthiazole kinase family YE3600 PF00708 Acylphosphatase YE3600 PF01300 Telomere recombination YE3600 PF07503 HypF finger YE3601 PF00586 AIR synthase related protein, N-terminal domain YE3601 PF02769 AIR synthase related protein, C-terminal domain YE3602 PF01924 Hydrogenase formation hypA family YE3602A PF01455 HupF/HypC family YE3603 PF02492 CobW/HypB/UreG, nucleotide-binding domain YE3603a PF01155 Hydrogenase expression/synthesis hypA family YE3604 PF11939 Protein of unknown function (DUF3457) YE3605 PF01750 Hydrogenase maturation protease YE3606 PF00374 Nickel-dependent hydrogenase YE3608 PF13247 4Fe-4S dicluster domain YE3609 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YE3609 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal YE3610 PF05433 YE3610 YE3611 PF00486 Transcriptional regulatory protein, C terminal YE3614 PF00657 GDSL-like Lipase/Acylhydrolase YE3614A PF02954 Bacterial regulatory protein, Fis family YE3615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE3615 PF02203 Tar ligand binding domain homologue YE3616 PF01370 NAD dependent epimerase/dehydratase family YE3617 PF07690 Major Facilitator Superfamily YE3618 PF01497 Periplasmic binding protein YE3619 PF01032 FecCD transport family YE3620 PF01032 FecCD transport family YE3621 PF00005 ABC transporter YE3622 PF00756 Putative esterase YE3622 PF11806 Domain of unknown function (DUF3327) YE3627 PF11604 Copper binding periplasmic protein CusF YE3628 PF02321 Outer membrane efflux protein YE3629 PF11604 Copper binding periplasmic protein CusF YE3629 PF16576 YE3629 YE3630 PF00873 AcrB/AcrD/AcrF family YE3631 PF13532 2OG-Fe(II) oxygenase superfamily YE3632 PF00486 Transcriptional regulatory protein, C terminal YE3634 PF01478 Type IV leader peptidase family YE3636 PF00263 YE3636 YE3636 PF13629 YE3636 YE3638 PF00437 Type II/IV secretion system protein YE3639 PF00482 Type II secretion system (T2SS), protein F YE3640 PF00482 Type II secretion system (T2SS), protein F YE3642 PF07811 YE3642 YE3643 PF16964 YE3643 YE3644 PF00092 von Willebrand factor type A domain YE3645 PF02472 Biopolymer transport protein ExbD/TolR YE3646 PF01618 YE3646 YE3647 PF01053 Cys/Met metabolism PLP-dependent enzyme YE3648 PF09335 YE3648 YE3649 PF06719 YE3649 YE3649 PF12833 Helix-turn-helix domain YE3651 PF00465 Iron-containing alcohol dehydrogenase YE3652 PF00248 Aldo/keto reductase family YE3653 PF04055 Radical SAM superfamily YE3653 PF08497 YE3653 YE3653 PF11842 YE3653 YE3654 PF00394 Multicopper oxidase YE3654 PF07731 Multicopper oxidase YE3654 PF07732 Multicopper oxidase YE3655 PF01553 Acyltransferase YE3656 PF00521 DNA gyrase/topoisomerase IV, subunit A YE3656 PF03989 DNA gyrase C-terminal domain, beta-propeller YE3657 PF02525 Flavodoxin-like fold YE3658 PF03992 Antibiotic biosynthesis monooxygenase YE3659 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE3659 PF03466 LysR substrate binding domain YE3660 PF00204 DNA gyrase B YE3660 PF00986 DNA gyrase B subunit, carboxyl terminus YE3660 PF01751 Toprim domain YE3660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE3661 PF05728 Uncharacterised protein family (UPF0227) YE3662 PF00149 Calcineurin-like phosphoesterase YE3663 PF06853 YE3663 YE3664 PF00293 NUDIX domain YE3665 PF02321 Outer membrane efflux protein YE3666 PF06693 YE3666 YE3667 PF03738 Glutathionylspermidine synthase preATP-grasp YE3668 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YE3669 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YE3671 PF04380 YE3671 YE3672 PF13520 Amino acid permease YE3673 PF00294 pfkB family carbohydrate kinase YE3673 PF01467 Cytidylyltransferase YE3674 PF03710 Glutamate-ammonia ligase adenylyltransferase YE3674 PF08335 GlnD PII-uridylyltransferase YE3675 PF01928 CYTH domain YE3676 PF08239 Bacterial SH3 domain YE3677 PF01743 Poly A polymerase head domain YE3677 PF01966 HD domain YE3677 PF12627 Probable RNA and SrmB- binding site of polymerase A YE3678 PF02673 YE3678 YE3679 PF02152 Dihydroneopterin aldolase YE3680 PF02660 YE3680 YE3681 PF00814 Glycoprotease family YE3682 PF01165 Ribosomal protein S21 YE3683 PF01807 CHC2 zinc finger YE3683 PF08275 DNA primase catalytic core, N-terminal domain YE3683 PF08278 DNA primase DnaG DnaB-binding YE3683 PF10410 DnaB-helicase binding domain of primase YE3683 PF13155 Toprim-like YE3684 PF00140 Sigma-70 factor, region 1 YE3684 PF03979 Sigma-70 factor, region 1 YE3684 PF04539 Sigma-70 region 3 YE3684 PF04542 Sigma-70 region 2 YE3684 PF04545 Sigma-70, region 4 YE3684 PF04546 Sigma-70, non-essential region YE3685 PF07075 Protein of unknown function (DUF1343) YE3687 PF00933 Glycosyl hydrolase family 3 N terminal domain YE3688 PF01380 SIS domain YE3688 PF01418 Helix-turn-helix domain, rpiR family YE3689 PF13580 SIS domain YE3690 PF00367 phosphotransferase system, EIIB YE3690 PF02378 Phosphotransferase system, EIIC YE3691 PF04960 Glutaminase YE3692 PF13520 Amino acid permease YE3693 PF00282 Pyridoxal-dependent decarboxylase conserved domain YE3694 PF01638 HxlR-like helix-turn-helix YE3695 PF07690 Major Facilitator Superfamily YE3696 PF03729 YE3696 YE3697 PF00892 EamA-like transporter family YE3698 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YE3698 PF07992 Pyridine nucleotide-disulphide oxidoreductase YE3699 PF05175 Methyltransferase small domain YE3700 PF03797 Autotransporter beta-domain YE3701 PF01863 Protein of unknown function DUF45 YE3702 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YE3703 PF03741 YE3703 YE3704 PF00375 Sodium:dicarboxylate symporter family YE3705 PF10688 YE3705 YE3706 PF04295 YE3706 YE3706 PF08666 SAF domain YE3707 PF01232 Mannitol dehydrogenase Rossmann domain YE3707 PF08125 Mannitol dehydrogenase C-terminal domain YE3708 PF02614 Glucuronate isomerase YE3709 PF07690 Major Facilitator Superfamily YE3710 PF00392 Bacterial regulatory proteins, gntR family YE3710 PF07729 FCD domain YE3712 PF09335 YE3712 YE3713 PF13721 SecD export protein N-terminal TM region YE3714 PF06476 YE3714 YE3715 PF05957 YE3715 YE3716 PF07332 YE3716 YE3717 PF13997 YE3717 YE3718 PF07681 YE3718 YE3719 PF13409 Glutathione S-transferase, N-terminal domain YE3719 PF13410 Glutathione S-transferase, C-terminal domain YE3720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE3720 PF03466 LysR substrate binding domain YE3721 PF02678 Pirin YE3722 PF00107 Zinc-binding dehydrogenase YE3722 PF08240 Alcohol dehydrogenase GroES-like domain YE3723 PF00248 Aldo/keto reductase family YE3724 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE3724 PF03466 LysR substrate binding domain YE3726 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YE3727 PF04348 LppC putative lipoprotein YE3728 PF02021 Uncharacterised protein family UPF0102 YE3729 PF13580 SIS domain YE3730 PF04972 BON domain YE3731 PF00912 Transglycosylase YE3733 PF00072 Response regulator receiver domain YE3733 PF00512 His Kinase A (phospho-acceptor) domain YE3733 PF00989 PAS fold YE3733 PF01627 Hpt domain YE3733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE3734 PF04055 Radical SAM superfamily YE3734 PF16199 YE3734 YE3735 PF00310 Glutamine amidotransferases class-II YE3735 PF01493 GXGXG motif YE3735 PF01645 Conserved region in glutamate synthase YE3735 PF04898 Glutamate synthase central domain YE3736 PF07992 Pyridine nucleotide-disulphide oxidoreductase YE3736 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YE3738 PF04386 Stringent starvation protein B YE3739 PF00043 Glutathione S-transferase, C-terminal domain YE3739 PF02798 Glutathione S-transferase, N-terminal domain YE3740 PF00380 Ribosomal protein S9/S16 YE3741 PF00572 Ribosomal protein L13 YE3742 PF03969 AFG1-like ATPase YE3743 PF06295 YE3743 YE3744 PF00595 PDZ domain (Also known as DHR or GLGF) YE3744 PF13180 PDZ domain YE3744 PF13365 Trypsin-like peptidase domain YE3745 PF13180 PDZ domain YE3745 PF13365 Trypsin-like peptidase domain YE3746 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YE3747 PF01722 BolA-like protein YE3748 PF13466 STAS domain YE3749 PF05494 Toluene tolerance, Ttg2 YE3750 PF02470 YE3750 YE3751 PF02405 YE3751 YE3752 PF00005 ABC transporter YE3753 PF01699 Sodium/calcium exchanger protein YE3754 PF00571 CBS domain YE3754 PF01380 SIS domain YE3755 PF08282 haloacid dehalogenase-like hydrolase YE3756 PF06835 Lipopolysaccharide-assembly, LptC-related YE3757 PF03968 OstA-like protein YE3758 PF00005 ABC transporter YE3758 PF12399 Branched-chain amino acid ATP-binding cassette transporter YE3759 PF00309 YE3759 YE3759 PF04552 Sigma-54, DNA binding domain YE3759 PF04963 Sigma-54 factor, core binding domain YE3760 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YE3761 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YE3762 PF03668 YE3762 YE3763 PF00381 PTS HPr component phosphorylation site YE3766 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YE3766 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YE3767 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YE3767 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YE3768 PF01042 Endoribonuclease L-PSP YE3769 PF14403 YE3769 YE3770 PF04168 YE3770 YE3771 PF01841 Transglutaminase-like superfamily YE3771 PF08379 YE3771 YE3772 PF00227 Proteasome subunit YE3773 PF00128 Alpha amylase, catalytic domain YE3773 PF11941 Domain of unknown function (DUF3459) YE3774 PF00367 phosphotransferase system, EIIB YE3774 PF02378 Phosphotransferase system, EIIC YE3775 PF00356 Bacterial regulatory proteins, lacI family YE3775 PF13377 Periplasmic binding protein-like domain YE3776 PF00122 E1-E2 ATPase YE3776 PF00690 Cation transporter/ATPase, N-terminus YE3776 PF00702 haloacid dehalogenase-like hydrolase YE3777 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YE3777 PF00874 PRD domain YE3777 PF05043 Mga helix-turn-helix domain YE3777 PF08279 HTH domain YE3778 PF10282 Lactonase, 7-bladed beta-propeller YE3779 PF07071 Protein of unknown function (DUF1341) YE3780 PF03841 L-seryl-tRNA selenium transferase YE3781 PF01979 Amidohydrolase family YE3782 PF14187 YE3782 YE3783 PF14188 YE3783 YE3784 PF14189 YE3784 YE3785 PF14272 YE3785 YE3787 PF01272 Transcription elongation factor, GreA/GreB, C-term YE3787 PF14760 Rnk N-terminus YE3788 PF07361 Cytochrome b562 YE3789 PF01523 Putative modulator of DNA gyrase YE3790 PF04751 Protein of unknown function (DUF615) YE3791 PF01337 Barstar (barnase inhibitor) YE3792 PF00545 ribonuclease YE3793 PF00171 Aldehyde dehydrogenase family YE3794 PF04632 YE3794 YE3795 PF13437 HlyD family secretion protein YE3795 PF13533 Biotin-lipoyl like YE3796 PF07869 YE3796 YE3797 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE3797 PF03466 LysR substrate binding domain YE3798 PF01523 Putative modulator of DNA gyrase YE3799 PF00795 Carbon-nitrogen hydrolase YE3800 PF13116 YE3800 YE3800 PF13502 YE3800 YE3801 PF00575 S1 RNA binding domain YE3801 PF10150 Ribonuclease E/G family YE3802 PF02545 Maf-like protein YE3803 PF04093 YE3803 YE3804 PF04085 rod shape-determining protein MreC YE3805 PF06723 MreB/Mbl protein YE3806 PF00563 EAL domain YE3806 PF00990 GGDEF domain YE3806 PF17157 YE3806 YE3807 PF00107 Zinc-binding dehydrogenase YE3807 PF08240 Alcohol dehydrogenase GroES-like domain YE3808 PF00174 Oxidoreductase molybdopterin binding domain YE3809 PF01794 YE3809 YE3810 PF01220 Dehydroquinase class II YE3811 PF00364 Biotin-requiring enzyme YE3812 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain YE3812 PF02785 Biotin carboxylase C-terminal domain YE3812 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YE3813 PF06196 YE3813 YE3814 PF00474 Sodium:solute symporter family YE3815 PF06325 Ribosomal protein L11 methyltransferase (PrmA) YE3816 PF01207 Dihydrouridine synthase (Dus) YE3817 PF02954 Bacterial regulatory protein, Fis family YE3818 PF00990 GGDEF domain YE3818 PF02743 Cache domain YE3819 PF05433 YE3819 YE3821 PF00313 'Cold-shock' DNA-binding domain YE3822 PF00313 'Cold-shock' DNA-binding domain YE3823 PF00313 'Cold-shock' DNA-binding domain YE3824 PF01609 Transposase DDE domain YE3827 PF00939 Sodium:sulfate symporter transmembrane region YE3829 PF03279 YE3829 YE3830 PF13276 YE3830 YE3830 PF13333 YE3830 YE3831 PF13518 Helix-turn-helix domain YE3832 PF10142 PhoPQ-activated pathogenicity-related protein YE3833 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE3834 PF00528 Binding-protein-dependent transport system inner membrane component YE3835 PF00528 Binding-protein-dependent transport system inner membrane component YE3836 PF00005 ABC transporter YE3837 PF04172 YE3837 YE3838 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE3838 PF03466 LysR substrate binding domain YE3839 PF00999 Sodium/hydrogen exchanger family YE3840 PF00860 Permease family YE3841 PF00043 Glutathione S-transferase, C-terminal domain YE3841 PF02798 Glutathione S-transferase, N-terminal domain YE3842 PF01381 Helix-turn-helix YE3843 PF07804 HipA-like C-terminal domain YE3843 PF07805 HipA-like N-terminal domain YE3843 PF13657 HipA N-terminal domain YE3844 PF00436 Single-strand binding protein family YE3846 PF04237 YjbR YE3847 PF00155 Aminotransferase class I and II YE3848 PF00842 Alanine racemase, C-terminal domain YE3848 PF01168 Alanine racemase, N-terminal domain YE3849 PF00772 DnaB-like helicase N terminal domain YE3849 PF03796 DnaB-like helicase C terminal domain YE3850 PF00107 Zinc-binding dehydrogenase YE3850 PF08240 Alcohol dehydrogenase GroES-like domain YE3851a PF09583 YE3851a YE3852 PF01207 Dihydrouridine synthase (Dus) YE3853 PF01475 Ferric uptake regulator family YE3854 PF05532 CsbD-like YE3855 PF00717 Peptidase S24-like YE3855 PF01726 LexA DNA binding domain YE3856 PF01219 Prokaryotic diacylglycerol kinase YE3857 PF01553 Acyltransferase YE3858 PF01040 UbiA prenyltransferase family YE3859 PF04345 Chorismate lyase YE3861 PF07148 YE3861 YE3862 PF02264 LamB porin YE3863 PF00005 ABC transporter YE3863 PF08402 TOBE domain YE3866 PF13416 Bacterial extracellular solute-binding protein YE3867 PF00528 Binding-protein-dependent transport system inner membrane component YE3867 PF14785 Maltose transport system permease protein MalF P2 domain YE3868 PF00528 Binding-protein-dependent transport system inner membrane component YE3869 PF06146 YE3869 YE3870 PF00342 Phosphoglucose isomerase YE3873 PF00696 Amino acid kinase family YE3873 PF01842 ACT domain YE3875 PF00809 Pterin binding enzyme YE3875 PF02310 B12 binding domain YE3875 PF02574 Homocysteine S-methyltransferase YE3875 PF02607 B12 binding domain YE3875 PF02965 Vitamin B12 dependent methionine synthase, activation domain YE3876 PF01614 Bacterial transcriptional regulator YE3876 PF09339 IclR helix-turn-helix domain YE3877 PF00665 Integrase core domain YE3878 PF01527 Transposase YE3879 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YE3880 PF00463 Isocitrate lyase family YE3881 PF01274 Malate synthase YE3882 PF04204 Homoserine O-succinyltransferase YE3883 PF00132 Bacterial transferase hexapeptide (six repeats) YE3884 PF01488 Shikimate / quinate 5-dehydrogenase YE3884 PF08501 Shikimate dehydrogenase substrate binding domain YE3885 PF01300 Telomere recombination YE3886 PF01396 YE3886 YE3887 PF04361 YE3887 YE3888 PF02481 DNA recombination-mediator protein A YE3889 PF01327 Polypeptide deformylase YE3890 PF00551 Formyl transferase YE3890 PF02911 Formyl transferase, C-terminal domain YE3891 PF01029 NusB family YE3891 PF01189 NOL1/NOP2/sun family YE3892 PF02080 TrkA-C domain YE3892 PF02254 TrkA-N domain YE3893 PF01741 Large-conductance mechanosensitive channel, MscL YE3894 PF03889 YE3894 YE3895 PF13411 MerR HTH family regulatory protein YE3896 PF09350 YE3896 YE3897 PF01196 Ribosomal protein L17 YE3898 PF01000 RNA polymerase Rpb3/RpoA insert domain YE3898 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YE3898 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YE3899 PF00163 Ribosomal protein S4/S9 N-terminal domain YE3899 PF01479 S4 domain YE3900 PF00411 Ribosomal protein S11 YE3901 PF00416 Ribosomal protein S13/S18 YE3902 PF00444 Ribosomal protein L36 YE3903 PF00344 SecY translocase YE3904 PF00828 Ribosomal protein L18e/L15 YE3905 PF00327 Ribosomal protein L30p/L7e YE3906 PF00333 Ribosomal protein S5, N-terminal domain YE3906 PF03719 Ribosomal protein S5, C-terminal domain YE3907 PF00861 Ribosomal L18p/L5e family YE3908 PF00347 Ribosomal protein L6 YE3909 PF00410 Ribosomal protein S8 YE3910 PF00253 Ribosomal protein S14p/S29e YE3911 PF00281 Ribosomal protein L5 YE3911 PF00673 ribosomal L5P family C-terminus YE3912 PF00467 KOW motif YE3912 PF17136 YE3912 YE3913 PF00238 Ribosomal protein L14p/L23e YE3914 PF00366 Ribosomal protein S17 YE3915 PF00831 Ribosomal L29 protein YE3916 PF00252 Ribosomal protein L16p/L10e YE3917 PF00189 Ribosomal protein S3, C-terminal domain YE3917 PF07650 KH domain YE3918 PF00237 Ribosomal protein L22p/L17e YE3919 PF00203 Ribosomal protein S19 YE3920 PF00181 Ribosomal Proteins L2, RNA binding domain YE3920 PF03947 Ribosomal Proteins L2, C-terminal domain YE3921 PF00276 Ribosomal protein L23 YE3922 PF00573 Ribosomal protein L4/L1 family YE3923 PF00297 Ribosomal protein L3 YE3924 PF00338 Ribosomal protein S10p/S20e YE3925 PF00210 Ferritin-like domain YE3926 PF04324 BFD-like [2Fe-2S] binding domain YE3927 PF00009 Elongation factor Tu GTP binding domain YE3927 PF03143 Elongation factor Tu C-terminal domain YE3927 PF03144 Elongation factor Tu domain 2 YE3928 PF00009 Elongation factor Tu GTP binding domain YE3928 PF00679 Elongation factor G C-terminus YE3928 PF03144 Elongation factor Tu domain 2 YE3928 PF03764 Elongation factor G, domain IV YE3928 PF14492 Elongation Factor G, domain II YE3929 PF00177 Ribosomal protein S7p/S5e YE3930 PF00164 Ribosomal protein S12/S23 YE3931 PF04077 DsrH like protein YE3932 PF02635 DsrE/DsrF-like family YE3933 PF02635 DsrE/DsrF-like family YE3934 PF08348 YE3934 YE3934 PF13309 YE3934 YE3935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YE3935 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YE3936 PF04102 SlyX YE3938 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YE3939 PF09526 YE3939 YE3940 PF00999 Sodium/hydrogen exchanger family YE3940 PF02254 TrkA-N domain YE3941 PF02525 Flavodoxin-like fold YE3942 PF00005 ABC transporter YE3942 PF12848 ABC transporter YE3943 PF00535 Glycosyl transferase family 2 YE3944 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YE3945 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YE3946 PF00528 Binding-protein-dependent transport system inner membrane component YE3947 PF00005 ABC transporter YE3948 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YE3949 PF02567 Phenazine biosynthesis-like protein YE3950 PF01810 YE3950 YE3951 PF00561 alpha/beta hydrolase fold YE3952 PF06794 Uncharacterised protein family (UPF0270) YE3953 PF00485 Phosphoribulokinase / Uridine kinase family YE3954 PF02566 OsmC-like protein YE3955 PF00027 Cyclic nucleotide-binding domain YE3955 PF00325 Bacterial regulatory proteins, crp family YE3956 PF12805 YE3956 YE3956 PF13515 YE3956 YE3957 PF00202 Aminotransferase class-III YE3958 PF00117 Glutamine amidotransferase class-I YE3959 PF05872 YE3959 YE3960 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YE3961 PF02056 Family 4 glycosyl hydrolase YE3961 PF11975 Family 4 glycosyl hydrolase C-terminal domain YE3962 PF00356 Bacterial regulatory proteins, lacI family YE3962 PF13377 Periplasmic binding protein-like domain YE3963 PF07690 Major Facilitator Superfamily YE3964 PF07969 Amidohydrolase family YE3965 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YE3965 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YE3965 PF04324 BFD-like [2Fe-2S] binding domain YE3965 PF07992 Pyridine nucleotide-disulphide oxidoreductase YE3966 PF13806 Rieske-like [2Fe-2S] domain YE3967 PF01226 Formate/nitrite transporter YE3968 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YE3968 PF10414 Sirohaem synthase dimerisation region YE3968 PF13241 Putative NAD(P)-binding YE3968 PF14824 Sirohaem biosynthesis protein central YE3969 PF00579 tRNA synthetases class I (W and Y) YE3970 PF13419 Haloacid dehalogenase-like hydrolase YE3971 PF00834 Ribulose-phosphate 3 epimerase family YE3972 PF02086 D12 class N6 adenine-specific DNA methyltransferase YE3973 PF05036 Sporulation related domain YE3974 PF01761 3-dehydroquinate synthase YE3975 PF01202 Shikimate kinase YE3976 PF00263 YE3976 YE3976 PF03958 Bacterial type II/III secretion system short domain YE3976A PF10748 YE3976A YE3977A PF05137 YE3977A YE3978 PF11104 Type IV pilus assembly protein PilM; YE3979 PF00905 Penicillin binding protein transpeptidase domain YE3979 PF00912 Transglycosylase YE3979 PF17092 YE3979 YE3980 PF00293 NUDIX domain YE3982 PF07095 Intracellular growth attenuator protein IgaA YE3983 PF13419 Haloacid dehalogenase-like hydrolase YE3984 PF01479 S4 domain YE3985 PF01430 Hsp33 protein YE3986 PF01293 Phosphoenolpyruvate carboxykinase YE3987 PF00455 YE3987 YE3987 PF08220 DeoR-like helix-turn-helix domain YE3988 PF01694 Rhomboid family YE3988 PF12122 Protein of unknown function (DUF3582) YE3989 PF00581 Rhodanese-like domain YE3990 PF00196 Bacterial regulatory proteins, luxR family YE3991 PF00343 Carbohydrate phosphorylase YE3992 PF02446 4-alpha-glucanotransferase YE3993 PF01106 NifU-like domain YE3993 PF01521 Iron-sulphur cluster biosynthesis YE3995 PF00561 alpha/beta hydrolase fold YE3996 PF07338 Protein of unknown function (DUF1471) YE3997 PF09012 FeoC like transcriptional regulator YE3998 PF02421 Ferrous iron transport protein B YE3998 PF07664 YE3998 YE3998 PF07670 Nucleoside recognition YE3999 PF04023 FeoA domain YE4000 PF00575 S1 RNA binding domain YE4000 PF09371 Tex-like protein N-terminal domain YE4000 PF12836 Helix-hairpin-helix motif YE4000 PF16921 YE4000 YE4003 PF01272 Transcription elongation factor, GreA/GreB, C-term YE4003 PF03449 Transcription elongation factor, N-terminal YE4004 PF00072 Response regulator receiver domain YE4004 PF00486 Transcriptional regulatory protein, C terminal YE4005 PF00512 His Kinase A (phospho-acceptor) domain YE4005 PF00672 HAMP domain YE4005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE4008 PF01266 FAD dependent oxidoreductase YE4008 PF16901 YE4008 YE4009 PF00343 Carbohydrate phosphorylase YE4010 PF00534 Glycosyl transferases group 1 YE4010 PF08323 Starch synthase catalytic domain YE4011 PF00483 Nucleotidyl transferase YE4012 PF00128 Alpha amylase, catalytic domain YE4012 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YE4013 PF00128 Alpha amylase, catalytic domain YE4013 PF02806 Alpha amylase, C-terminal all-beta domain YE4013 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YE4014 PF06580 YE4014 YE4014 PF07694 5TMR of 5TMR-LYT YE4015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE4015 PF03466 LysR substrate binding domain YE4016 PF03306 Alpha-acetolactate decarboxylase YE4017 PF00205 Thiamine pyrophosphate enzyme, central domain YE4017 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YE4017 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YE4018 PF01118 Semialdehyde dehydrogenase, NAD binding domain YE4018 PF02774 Semialdehyde dehydrogenase, dimerisation domain YE4019 PF01914 YE4019 YE4020 PF01202 Shikimate kinase YE4021 PF02447 YE4021 YE4022 PF00356 Bacterial regulatory proteins, lacI family YE4022 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YE4023 PF02678 Pirin YE4024 PF00583 Acetyltransferase (GNAT) family YE4025 PF01261 Xylose isomerase-like TIM barrel YE4026 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YE4026 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YE4027 PF00205 Thiamine pyrophosphate enzyme, central domain YE4027 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YE4027 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YE4028 PF00294 pfkB family carbohydrate kinase YE4028 PF09863 Uncharacterized protein conserved in bacteria (DUF2090) YE4029 PF01380 SIS domain YE4029 PF01418 Helix-turn-helix domain, rpiR family YE4030 PF04962 KduI/IolB family YE4031 PF00171 Aldehyde dehydrogenase family YE4032 PF07690 Major Facilitator Superfamily YE4033 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE4033 PF03466 LysR substrate binding domain YE4034 PF08282 haloacid dehalogenase-like hydrolase YE4035 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YE4036 PF05681 YE4036 YE4036 PF05683 Fumarase C-terminus YE4037 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YE4037 PF03466 LysR substrate binding domain YE4038 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YE4039 PF00288 GHMP kinases N terminal domain YE4040 PF02310 B12 binding domain YE4041 PF13941 YE4041 YE4042 PF06368 Methylaspartate mutase E chain (MutE) YE4043 PF05034 Methylaspartate ammonia-lyase N-terminus YE4043 PF07476 Methylaspartate ammonia-lyase C-terminus YE4044 PF07287 YE4044 YE4045 PF14330 YE4045 YE4046 PF00375 Sodium:dicarboxylate symporter family YE4047 PF03486 HI0933-like protein YE4048 PF01384 YE4048 YE4049 PF10625 YE4049 YE4050 PF00582 Universal stress protein family YE4051 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YE4051 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YE4052 PF00353 Hemolysin-type calcium-binding repeat (2 copies) YE4052 PF08548 Peptidase M10 serralysin C terminal YE4053 PF04445 Putative SAM-dependent methyltransferase YE4054 PF01432 Peptidase family M3 YE4055 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ YE4057 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YE4057 PF07992 Pyridine nucleotide-disulphide oxidoreductase YE4059 PF03212 Pertactin YE4059 PF03797 Autotransporter beta-domain YE4060 PF03631 YE4060 YE4061 PF02611 CDP-diacylglycerol pyrophosphatase YE4062 PF05170 YE4062 YE4063 PF00563 EAL domain YE4064 PF01361 Tautomerase enzyme YE4065 PF00294 pfkB family carbohydrate kinase YE4066 PF00675 Insulinase (Peptidase family M16) YE4066 PF05193 Peptidase M16 inactive domain YE4067 PF00375 Sodium:dicarboxylate symporter family YE4068 PF00754 F5/8 type C domain YE4069 PF06917 Periplasmic pectate lyase YE4070 PF06178 Oligogalacturonate-specific porin protein (KdgM) YE4071 PF00563 EAL domain YE4071 PF00672 HAMP domain YE4071 PF17154 YE4071 YE4072 PF05420 YE4072 YE4072 PF13432 Tetratricopeptide repeat YE4072 PF14559 Tetratricopeptide repeat YE4072A PF01270 Glycosyl hydrolases family 8 YE4073 PF03170 Bacterial cellulose synthase subunit YE4074 PF00535 Glycosyl transferase family 2 YE4074 PF03552 Cellulose synthase YE4074 PF07238 PilZ domain YE4075 PF06564 YhjQ protein YE4076 PF10945 YE4076 YE4077 PF10995 YE4077 YE4078 PF11658 YE4078 YE4079 PF00005 ABC transporter YE4079 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YE4080 PF00005 ABC transporter YE4080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YE4081 PF00528 Binding-protein-dependent transport system inner membrane component YE4081 PF12911 YE4081 YE4082 PF00528 Binding-protein-dependent transport system inner membrane component YE4083 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YE4084 PF05860 haemagglutination activity domain YE4085 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YE4085 PF08479 POTRA domain, ShlB-type YE4086 PF05860 haemagglutination activity domain YE4087 PF07690 Major Facilitator Superfamily YE4088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE4088 PF05231 YE4088 YE4088 PF07730 Histidine kinase YE4089 PF00072 Response regulator receiver domain YE4089 PF00196 Bacterial regulatory proteins, luxR family YE4090 PF00884 Sulfatase YE4090 PF08019 YE4090 YE4091 PF02566 OsmC-like protein YE4092 PF12146 Putative lysophospholipase YE4093 PF00324 Amino acid permease YE4094 PF00221 Aromatic amino acid lyase YE4095 PF01175 Urocanase YE4098 PF01238 Phosphomannose isomerase type I YE4099 PF00232 Glycosyl hydrolase family 1 YE4100 PF16990 YE4100 YE4101 PF02264 LamB porin YE4102 PF02378 Phosphotransferase system, EIIC YE4103 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YE4104 PF02378 Phosphotransferase system, EIIC YE4105 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YE4106 PF00480 ROK family YE4107 PF00356 Bacterial regulatory proteins, lacI family YE4107 PF13377 Periplasmic binding protein-like domain YE4108 PF13673 Acetyltransferase (GNAT) domain YE4109 PF08843 Nucleotidyl transferase of unknown function (DUF1814) YE4112 PF02661 Fic/DOC family YE4112 PF13784 Fic/DOC family N-terminal YE4113 PF03288 Poxvirus D5 protein-like YE4117 PF00589 Phage integrase family YE4117 PF13356 Domain of unknown function (DUF4102) YE4118 PF12833 Helix-turn-helix domain YE4118 PF13377 Periplasmic binding protein-like domain YE4119 PF02653 YE4119 YE4120 PF00005 ABC transporter YE4121 PF13407 Periplasmic binding protein domain YE4123 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YE4123 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YE4123A PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YE4123A PF02753 Pili assembly chaperone PapD, C-terminal domain YE4124 PF00857 Isochorismatase family YE4125 PF01965 DJ-1/PfpI family YE4125 PF12833 Helix-turn-helix domain YE4126 PF01757 YE4126 YE4127 PF07690 Major Facilitator Superfamily YE4128 PF07804 HipA-like C-terminal domain YE4128 PF07805 HipA-like N-terminal domain YE4128 PF13657 HipA N-terminal domain YE4129 PF01381 Helix-turn-helix YE4130 PF00009 Elongation factor Tu GTP binding domain YE4130 PF09106 Elongation factor SelB, winged helix YE4130 PF09107 Elongation factor SelB, winged helix YE4131 PF03841 L-seryl-tRNA selenium transferase YE4131 PF12390 YE4131 YE4132 PF04216 Protein involved in formate dehydrogenase formation YE4133 PF01292 Prokaryotic cytochrome b561 YE4134 PF09163 Formate dehydrogenase N, transmembrane YE4134 PF13247 4Fe-4S dicluster domain YE4137 PF02634 FdhD/NarQ family YE4138 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YE4138 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YE4139 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE4139 PF00672 HAMP domain YE4139 PF16591 YE4139 YE4140 PF03473 MOSC domain YE4140 PF03475 3-alpha domain YE4141 PF01850 PIN domain YE4142 PF04014 Antidote-toxin recognition MazE YE4143 PF10928 Protein of unknown function (DUF2810) YE4144 PF00155 Aminotransferase class I and II YE4144 PF00392 Bacterial regulatory proteins, gntR family YE4145 PF01810 YE4145 YE4146 PF05068 Mannitol repressor YE4147 PF01232 Mannitol dehydrogenase Rossmann domain YE4147 PF08125 Mannitol dehydrogenase C-terminal domain YE4148 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YE4148 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YE4148 PF02378 Phosphotransferase system, EIIC YE4149 PF11254 YE4149 YE4150 PF02092 YE4150 YE4150 PF05746 DALR anticodon binding domain YE4151 PF02091 Glycyl-tRNA synthetase alpha subunit YE4152 PF03352 Methyladenine glycosylase YE4153 PF13673 Acetyltransferase (GNAT) domain YE4156 PF00691 OmpA family YE4156 PF13488 YE4156 YE4158 PF07690 Major Facilitator Superfamily YE4159 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YE4159 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YE4160 PF00128 Alpha amylase, catalytic domain YE4160 PF17143 YE4160 YE4161 PF00155 Aminotransferase class I and II YE4162 PF02080 TrkA-C domain YE4162 PF06826 YE4162 YE4163 PF00011 Hsp20/alpha crystallin family YE4164 PF00011 Hsp20/alpha crystallin family YE4165 PF07119 YE4165 YE4166 PF07676 WD40-like Beta Propeller Repeat YE4166 PF12566 YE4166 YE4167 PF00291 Pyridoxal-phosphate dependent enzyme YE4168 PF02423 Ornithine cyclodeaminase/mu-crystallin family YE4169 PF08282 haloacid dehalogenase-like hydrolase YE4170 PF00204 DNA gyrase B YE4170 PF00986 DNA gyrase B subunit, carboxyl terminus YE4170 PF01751 Toprim domain YE4170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE4171 PF02463 RecF/RecN/SMC N terminal domain YE4172 PF00712 DNA polymerase III beta subunit, N-terminal domain YE4172 PF02767 DNA polymerase III beta subunit, central domain YE4172 PF02768 DNA polymerase III beta subunit, C-terminal domain YE4173 PF00308 Bacterial dnaA protein YE4173 PF08299 Bacterial dnaA protein helix-turn-helix YE4173 PF11638 DnaA N-terminal domain YE4175 PF00468 Ribosomal protein L34 YE4176 PF00825 Ribonuclease P YE4177 PF02096 60Kd inner membrane protein YE4177 PF14849 YidC periplasmic domain YE4178 PF01926 50S ribosome-binding GTPase YE4178 PF10396 GTP-binding protein TrmE N-terminus YE4178 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE YE4179 PF07055 Enoyl reductase FAD binding domain YE4179 PF12241 Trans-2-enoyl-CoA reductase catalytic region YE4179 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YE4180 PF03180 NLPA lipoprotein YE4181 PF00005 ABC transporter YE4181 PF09383 NIL domain YE4182 PF00528 Binding-protein-dependent transport system inner membrane component YE4183 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YE4183 PF00672 HAMP domain YE4183 PF02743 Cache domain YE4184 PF03358 NADPH-dependent FMN reductase YE4185 PF00512 His Kinase A (phospho-acceptor) domain YE4185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YE4186 PF00072 Response regulator receiver domain YE4186 PF00196 Bacterial regulatory proteins, luxR family YE4187 PF03928 Domain of unknown function (DUF336) YE4188 PF00860 Permease family YE4189 PF13419 Haloacid dehalogenase-like hydrolase YE4190 PF00528 Binding-protein-dependent transport system inner membrane component YE4191 PF00528 Binding-protein-dependent transport system inner membrane component YE4193 PF00497 Bacterial extracellular solute-binding proteins, family 3 YE4194 PF00102 Protein-tyrosine phosphatase YE4196 PF01895 PhoU domain YE4198 PF00005 ABC transporter YE4199 PF00528 Binding-protein-dependent transport system inner membrane component YE4200 PF00528 Binding-protein-dependent transport system inner membrane component YE4201 PF12849 PBP superfamily domain YE4203 PF01380 SIS domain YE4203 PF13522 Glutamine amidotransferase domain YE4204 PF00132 Bacterial transferase hexapeptide (six repeats) YE4204 PF12804 MobA-like NTP transferase domain YE4205 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YE4205 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YE4206 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YE4206 PF02874 ATP synthase alpha/beta family, beta-barrel domain YE4207 PF00231 ATP synthase YE4208 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YE4208 PF00306 ATP synthase alpha/beta chain, C terminal domain YE4208 PF02874 ATP synthase alpha/beta family, beta-barrel domain YE4209 PF00213 ATP synthase delta (OSCP) subunit YE4210 PF00430 ATP synthase B/B' CF(0) YE4211 PF00137 ATP synthase subunit C YE4212 PF00119 ATP synthase A chain YE4213 PF03899 YE4213 YE4214 PF02527 rRNA small subunit methyltransferase G YE4215 PF01134 Glucose inhibited division protein A YE4215 PF13932 GidA associated domain 3 YEP0003 PF03590 Aspartate-ammonia ligase YEP0033 PF01323 DSBA-like thioredoxin domain YEP0042 PF04220 YEP0042 YEP0045 PF04055 Radical SAM superfamily YEP0086 PF03120 NAD-dependent DNA ligase OB-fold domain