YE0002 SM00344 helix_turn_helix ASNC type YE0005 SM00327 von Willebrand factor (vWF) type A domain YE0006 SM00382 ATPases associated with a variety of cellular activities YE0009 SM00382 ATPases associated with a variety of cellular activities YE0012A SM00354 helix_turn _helix lactose operon repressor YE0014 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE0014 SM00895 YE0014 YE0021 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YE0021 SM00474 3'-5' exonuclease YE0021 SM00475 5'-3' exonuclease YE0021 SM00482 DNA polymerase A domain YE0024 SM00729 Elongator protein 3, MiaB family, Radical SAM YE0025 SM00382 ATPases associated with a variety of cellular activities YE0025 SM00448 cheY-homologous receiver domain YE0026 SM00091 PAS domain YE0026 SM00387 Histidine kinase-like ATPases YE0026 SM00388 His Kinase A (phosphoacceptor) domain YE0027 SM01230 YE0027 YE0035 SM00421 helix_turn_helix, Lux Regulon YE0036 SM00421 helix_turn_helix, Lux Regulon YE0037 SM00421 helix_turn_helix, Lux Regulon YE0038 SM00421 helix_turn_helix, Lux Regulon YE0039 SM00421 helix_turn_helix, Lux Regulon YE0043 SM00487 DEAD-like helicases superfamily YE0043 SM00490 helicase superfamily c-terminal domain YE0045 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YE0045 SM00954 Region found in RelA / SpoT proteins YE0046 SM01409 YE0046 YE0047 SM00072 Guanylate kinase homologues. YE0048 SM00532 Ligase N family YE0053 SM00052 Putative diguanylate phosphodiesterase YE0053 SM00091 PAS domain YE0053 SM00267 diguanylate cyclase YE0055 SM00849 Metallo-beta-lactamase superfamily YE0066 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YE0066 SM01232 YE0066 YE0074 SM00829 Enoylreductase YE0078 SM00450 Rhodanese Homology Domain YE0082 SM00971 Serine acetyltransferase, N-terminal YE0084 SM00342 helix_turn_helix, arabinose operon control protein YE0085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE0085 SM00387 Histidine kinase-like ATPases YE0085 SM00388 His Kinase A (phosphoacceptor) domain YE0086 SM00448 cheY-homologous receiver domain YE0086 SM00862 Transcriptional regulatory protein, C terminal YE0104 SM00382 ATPases associated with a variety of cellular activities YE0104 SM01086 C-terminal, D2-small domain, of ClpB protein YE0107 SM00354 helix_turn _helix lactose operon repressor YE0108 SM00487 DEAD-like helicases superfamily YE0108 SM00490 helicase superfamily c-terminal domain YE0119 SM00859 Semialdehyde dehydrogenase, NAD binding domain YE0127 SM00382 ATPases associated with a variety of cellular activities YE0142 SM00382 ATPases associated with a variety of cellular activities YE0147 SM00382 ATPases associated with a variety of cellular activities YE0164 SM00060 Fibronectin type 3 domain YE0166 SM00487 DEAD-like helicases superfamily YE0166 SM00490 helicase superfamily c-terminal domain YE0168 SM00357 Cold shock protein domain YE0168 SM00382 ATPases associated with a variety of cellular activities YE0168 SM00959 Rho termination factor, N-terminal domain YE0172 SM00984 UDP binding domain YE0190 SM01219 YE0190 YE0204 SM00341 Helicase and RNase D C-terminal YE0204 SM00487 DEAD-like helicases superfamily YE0204 SM00490 helicase superfamily c-terminal domain YE0204 SM00956 YE0204 YE0225 SM00382 ATPases associated with a variety of cellular activities YE0225 SM00962 SRP54-type protein, GTPase domain YE0225 SM00963 SRP54-type protein, helical bundle domain YE0226 SM00382 ATPases associated with a variety of cellular activities YE0233 SM00382 ATPases associated with a variety of cellular activities YE0234 SM00382 ATPases associated with a variety of cellular activities YE0244 SM00382 ATPases associated with a variety of cellular activities YE0263 SM01004 Delta-aminolevulinic acid dehydratase YE0264 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YE0280 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YE0280 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YE0281 SM00649 Ribosomal protein L11/L12 YE0287 SM00663 RNA polymerase I subunit A N-terminus YE0289 SM00876 Biotin and Thiamin Synthesis associated domain YE0300 SM00411 bacterial (prokaryotic) histone like domain YE0302 SM01209 YE0302 YE0302 SM01210 YE0302 YE0303 SM00798 AICARFT/IMPCHase bienzyme YE0303 SM00851 MGS-like domain YE0311 SM00421 helix_turn_helix, Lux Regulon YE0311 SM00448 cheY-homologous receiver domain YE0312 SM00342 helix_turn_helix, arabinose operon control protein YE0318 SM00965 Secretin and TonB N terminus short domain YE0319 SM00382 ATPases associated with a variety of cellular activities YE0324 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE0327 SM00382 ATPases associated with a variety of cellular activities YE0335 SM00729 Elongator protein 3, MiaB family, Radical SAM YE0341 SM00822 YE0341 YE0353 SM00883 Chaperonin 10 Kd subunit YE0357 SM00841 Elongation factor P, C-terminal YE0357 SM01185 YE0357 YE0369 SM00479 YE0369 YE0374 SM00257 Lysin motif YE0374 SM00646 YE0374 YE0375 SM00853 MutL C terminal dimerisation domain YE0375 SM01340 YE0375 YE0379 SM00244 prohibitin homologues YE0380 SM00244 prohibitin homologues YE0382 SM00788 Adenylosuccinate synthetase YE0384 SM00316 Ribosomal protein S1-like RNA-binding domain YE0384 SM00357 Cold shock protein domain YE0384 SM00955 YE0384 YE0385 SM00967 RNA 2'-O ribose methyltransferase substrate binding YE0403 SM01091 Transporter associated domain YE0409 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE0409 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE0422 SM00387 Histidine kinase-like ATPases YE0422 SM00388 His Kinase A (phosphoacceptor) domain YE0423 SM00448 cheY-homologous receiver domain YE0423 SM00862 Transcriptional regulatory protein, C terminal YE0426 SM01103 YE0426 YE0428 SM00382 ATPases associated with a variety of cellular activities YE0433 SM00316 Ribosomal protein S1-like RNA-binding domain YE0433 SM00322 K homology RNA-binding domain YE0434 SM00173 Ras subfamily of RAS small GTPases YE0437 SM01387 YE0437 YE0438 SM00316 Ribosomal protein S1-like RNA-binding domain YE0438 SM00322 K homology RNA-binding domain YE0439 SM00028 Tetratricopeptide repeats YE0440 SM00487 DEAD-like helicases superfamily YE0440 SM00490 helicase superfamily c-terminal domain YE0463 SM00382 ATPases associated with a variety of cellular activities YE0468 SM00859 Semialdehyde dehydrogenase, NAD binding domain YE0470 SM00072 Guanylate kinase homologues. YE0472 SM00382 ATPases associated with a variety of cellular activities YE0473 SM00382 ATPases associated with a variety of cellular activities YE0478 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE0478 SM00866 YE0478 YE0487 SM00382 ATPases associated with a variety of cellular activities YE0488 SM00382 ATPases associated with a variety of cellular activities YE0514 SM00421 helix_turn_helix, Lux Regulon YE0524 SM01133 YE0524 YE0528 SM00382 ATPases associated with a variety of cellular activities YE0541 SM01120 YE0541 YE0550 SM00091 PAS domain YE0550A SM00354 helix_turn _helix lactose operon repressor YE0551 SM00640 Glycosyl hydrolases family 32 YE0557 SM00267 diguanylate cyclase YE0565 SM00749 bacterial OsmY and nodulation domain YE0570 SM01133 YE0570 YE0571 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain YE0579 SM00382 ATPases associated with a variety of cellular activities YE0580 SM00530 Helix-turn-helix XRE-family like proteins YE0581 SM00829 Enoylreductase YE0584 SM00382 ATPases associated with a variety of cellular activities YE0586 SM00267 diguanylate cyclase YE0588 SM00831 Cation transporter/ATPase, N-terminus YE0592 SM00855 Phosphoglycerate mutase family YE0593 SM00342 helix_turn_helix, arabinose operon control protein YE0593 SM00871 Bacterial transcription activator, effector binding domain YE0595 SM00448 cheY-homologous receiver domain YE0595 SM00862 Transcriptional regulatory protein, C terminal YE0605 SM00852 Probable molybdopterin binding domain YE0607 SM00247 Beta/gamma crystallins YE0610 SM00271 DnaJ molecular chaperone homology domain YE0615 SM00904 Riboflavin kinase YE0621 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YE0622 SM00851 MGS-like domain YE0622 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YE0630 SM00650 Ribosomal RNA adenine dimethylases YE0634 SM00271 DnaJ molecular chaperone homology domain YE0636 SM00487 DEAD-like helicases superfamily YE0636 SM00490 helicase superfamily c-terminal domain YE0637 SM00486 DNA polymerase type-B family YE0640 SM00382 ATPases associated with a variety of cellular activities YE0653 SM01329 YE0653 YE0654 SM00917 LeuA allosteric (dimerisation) domain YE0661 SM00354 helix_turn _helix lactose operon repressor YE0676 SM00842 Cell division protein FtsA YE0677 SM00864 Tubulin/FtsZ family, GTPase domain YE0677 SM00865 Tubulin/FtsZ family, C-terminal domain YE0681 SM00957 SecA DEAD-like domain YE0681 SM00958 SecA preprotein cross-linking domain YE0686 SM01240 YE0686 YE0692 SM00644 YE0692 YE0694 SM00634 Bacterial Ig-like domain (group 1) YE0698 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE0698 SM00895 YE0698 YE0703 SM00342 helix_turn_helix, arabinose operon control protein YE0714 SM00947 Carbonic anhydrase YE0715 SM00382 ATPases associated with a variety of cellular activities YE0728 SM00490 helicase superfamily c-terminal domain YE0728 SM00847 Helicase associated domain (HA2) Add an annotation YE0730 SM00382 ATPases associated with a variety of cellular activities YE0740 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YE0741 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YE0742 SM00073 Histidine Phosphotransfer domain YE0742 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE0742 SM00387 Histidine kinase-like ATPases YE0742 SM00388 His Kinase A (phosphoacceptor) domain YE0742 SM00448 cheY-homologous receiver domain YE0744 SM00954 Region found in RelA / SpoT proteins YE0747 SM01192 YE0747 YE0747 SM01193 YE0747 YE0774 SM00257 Lysin motif YE0776 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YE0776 SM00534 ATPase domain of DNA mismatch repair MUTS family YE0791 SM00382 ATPases associated with a variety of cellular activities YE0793 SM00382 ATPases associated with a variety of cellular activities YE0795 SM00825 Beta-ketoacyl synthase YE0798 SM00822 YE0798 YE0801 SM00062 Bacterial periplasmic substrate-binding proteins YE0804 SM00382 ATPases associated with a variety of cellular activities YE0807 SM00530 Helix-turn-helix XRE-family like proteins YE0808 SM00838 Elongation factor G C-terminus YE0808 SM00889 Elongation factor G, domain IV YE0809 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YE0820 SM00382 ATPases associated with a variety of cellular activities YE0823 SM00861 Transketolase, pyrimidine binding domain YE0829 SM00382 ATPases associated with a variety of cellular activities YE0834 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YE0840 SM01091 Transporter associated domain YE0842 SM00382 ATPases associated with a variety of cellular activities YE0842 SM00962 SRP54-type protein, GTPase domain YE0842 SM00963 SRP54-type protein, helical bundle domain YE0849 SM00448 cheY-homologous receiver domain YE0849 SM00850 LytTr DNA-binding domain YE0851 SM00830 Chorismate mutase type II YE0852 SM00830 Chorismate mutase type II YE0854 SM00530 Helix-turn-helix XRE-family like proteins YE0860 SM01022 YE0860 YE0891 SM00363 S4 RNA-binding domain YE0893 SM00382 ATPases associated with a variety of cellular activities YE0893 SM01086 C-terminal, D2-small domain, of ClpB protein YE0897 SM00563 Phosphate acyltransferases YE0908 SM00825 Beta-ketoacyl synthase YE0910 SM00822 YE0910 YE0911 SM00825 Beta-ketoacyl synthase YE0918 SM00257 Lysin motif YE0919 SM00849 Metallo-beta-lactamase superfamily YE0922 SM00479 YE0922 YE0925 SM00382 ATPases associated with a variety of cellular activities YE0931 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE0935 SM00342 helix_turn_helix, arabinose operon control protein YE0940 SM00357 Cold shock protein domain YE0941 SM00342 helix_turn_helix, arabinose operon control protein YE0942 SM00450 Rhodanese Homology Domain YE0949 SM00382 ATPases associated with a variety of cellular activities YE0950 SM00382 ATPases associated with a variety of cellular activities YE0954 SM00988 UreE urease accessory protein, N-terminal domain YE0971 SM00342 helix_turn_helix, arabinose operon control protein YE1001 SM01321 YE1001 YE1002 SM00986 Uracil DNA glycosylase superfamily YE1002 SM00987 UreE urease accessory protein, C-terminal domain YE1006 SM00248 ankyrin repeats YE1007 SM00487 DEAD-like helicases superfamily YE1007 SM00490 helicase superfamily c-terminal domain YE1017 SM00358 Double-stranded RNA binding motif YE1017 SM00535 Ribonuclease III family YE1026 SM00421 helix_turn_helix, Lux Regulon YE1031 SM00062 Bacterial periplasmic substrate-binding proteins YE1032 SM01211 YE1032 YE1035 SM00387 Histidine kinase-like ATPases YE1035 SM00388 His Kinase A (phosphoacceptor) domain YE1037 SM00382 ATPases associated with a variety of cellular activities YE1037 SM00448 cheY-homologous receiver domain YE1039 SM00938 Nitrogen regulatory protein P-II YE1060 SM00271 DnaJ molecular chaperone homology domain YE1066 SM01359 YE1066 YE1066 SM01360 YE1066 YE1068 SM00247 Beta/gamma crystallins YE1069 SM00562 YE1069 YE1071 SM00028 Tetratricopeptide repeats YE1072 SM00530 Helix-turn-helix XRE-family like proteins YE1076 SM00564 beta-propeller repeat YE1081 SM00116 Domain in cystathionine beta-synthase and other proteins. YE1081 SM01240 YE1081 YE1092 SM00116 Domain in cystathionine beta-synthase and other proteins. YE1093 SM00420 helix_turn_helix, Deoxyribose operon repressor YE1093 SM01134 YE1093 YE1099 SM00046 Diacylglycerol kinase catalytic domain (presumed) YE1102 SM00530 Helix-turn-helix XRE-family like proteins YE1104 SM00448 cheY-homologous receiver domain YE1104 SM00862 Transcriptional regulatory protein, C terminal YE1105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE1105 SM00387 Histidine kinase-like ATPases YE1105 SM00388 His Kinase A (phosphoacceptor) domain YE1116 SM00052 Putative diguanylate phosphodiesterase YE1116 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YE1116 SM00091 PAS domain YE1116 SM00267 diguanylate cyclase YE1117 SM00924 MgtE intracellular N domain YE1137 SM01130 YE1137 YE1153 SM00421 helix_turn_helix, Lux Regulon YE1153 SM00448 cheY-homologous receiver domain YE1156 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YE1162 SM00919 Malic enzyme, NAD binding domain YE1162 SM01274 YE1162 YE1165 SM00421 helix_turn_helix, Lux Regulon YE1175A SM00530 Helix-turn-helix XRE-family like proteins YE1188 SM01130 YE1188 YE1197 SM00382 ATPases associated with a variety of cellular activities YE1199 SM00382 ATPases associated with a variety of cellular activities YE1201 SM00448 cheY-homologous receiver domain YE1201 SM00862 Transcriptional regulatory protein, C terminal YE1202 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE1202 SM00387 Histidine kinase-like ATPases YE1202 SM00388 His Kinase A (phosphoacceptor) domain YE1210 SM00771 ZipA, C-terminal domain (FtsZ-binding) YE1211 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YE1211 SM00292 breast cancer carboxy-terminal domain YE1211 SM00532 Ligase N family YE1227 SM00448 cheY-homologous receiver domain YE1227 SM00850 LytTr DNA-binding domain YE1228 SM00387 Histidine kinase-like ATPases YE1239 SM00382 ATPases associated with a variety of cellular activities YE1248 SM00382 ATPases associated with a variety of cellular activities YE1251 SM00422 helix_turn_helix, mercury resistance YE1254 SM00867 YceI-like domain YE1255 SM00354 helix_turn _helix lactose operon repressor YE1263 SM00382 ATPases associated with a variety of cellular activities YE1279 SM00463 Small MutS-related domain YE1287 SM00825 Beta-ketoacyl synthase YE1288 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YE1288 SM00091 PAS domain YE1288 SM00267 diguanylate cyclase YE1295 SM00354 helix_turn _helix lactose operon repressor YE1303 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE1306 SM00342 helix_turn_helix, arabinose operon control protein YE1308 SM00859 Semialdehyde dehydrogenase, NAD binding domain YE1318 SM00062 Bacterial periplasmic substrate-binding proteins YE1321 SM00382 ATPases associated with a variety of cellular activities YE1324 SM00052 Putative diguanylate phosphodiesterase YE1326a SM01321 YE1326a YE1331 SM00354 helix_turn _helix lactose operon repressor YE1340 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YE1348 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YE1349 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YE1349 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YE1364 SM00354 helix_turn _helix lactose operon repressor YE1372 SM00869 Autotransporter beta-domain YE1378 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YE1380 SM01060 YE1380 YE1383 SM00852 Probable molybdopterin binding domain YE1395 SM00434 DNA Topoisomerase IV YE1396 SM00387 Histidine kinase-like ATPases YE1396 SM00388 His Kinase A (phosphoacceptor) domain YE1396 SM00448 cheY-homologous receiver domain YE1397 SM00421 helix_turn_helix, Lux Regulon YE1397 SM00448 cheY-homologous receiver domain YE1398 SM00387 Histidine kinase-like ATPases YE1398 SM00388 His Kinase A (phosphoacceptor) domain YE1405 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE1405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE1409 SM00530 Helix-turn-helix XRE-family like proteins YE1423 SM00487 DEAD-like helicases superfamily YE1423 SM00490 helicase superfamily c-terminal domain YE1424 SM00363 S4 RNA-binding domain YE1427 SM00382 ATPases associated with a variety of cellular activities YE1431 SM00052 Putative diguanylate phosphodiesterase YE1434 SM00014 Acid phosphatase homologues YE1435 SM00833 Cobalamin synthesis protein cobW C-terminal domain YE1437 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE1437 SM00895 YE1437 YE1441 SM00841 Elongation factor P, C-terminal YE1441 SM01185 YE1441 YE1450 SM00862 Transcriptional regulatory protein, C terminal YE1455 SM00518 AP endonuclease family 2 YE1460 SM00382 ATPases associated with a variety of cellular activities YE1467 SM00382 ATPases associated with a variety of cellular activities YE1467 SM00930 YE1467 YE1470 SM00116 Domain in cystathionine beta-synthase and other proteins. YE1471 SM00936 Penicillin-binding protein 5, C-terminal domain YE1474 SM00420 helix_turn_helix, Deoxyribose operon repressor YE1474 SM01134 YE1474 YE1475 SM01133 YE1475 YE1476 SM00014 Acid phosphatase homologues YE1485 SM00382 ATPases associated with a variety of cellular activities YE1491 SM00062 Bacterial periplasmic substrate-binding proteins YE1491 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YE1495 SM00062 Bacterial periplasmic substrate-binding proteins YE1495 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YE1496 SM00382 ATPases associated with a variety of cellular activities YE1515 SM00382 ATPases associated with a variety of cellular activities YE1516 SM00357 Cold shock protein domain YE1518 SM00382 ATPases associated with a variety of cellular activities YE1518 SM01086 C-terminal, D2-small domain, of ClpB protein YE1519 SM00316 Ribosomal protein S1-like RNA-binding domain YE1521 SM00382 ATPases associated with a variety of cellular activities YE1522 SM00382 ATPases associated with a variety of cellular activities YE1524 SM00344 helix_turn_helix ASNC type YE1525 SM00843 YE1525 YE1527 SM00382 ATPases associated with a variety of cellular activities YE1535 SM00870 YE1535 YE1540 SM00316 Ribosomal protein S1-like RNA-binding domain YE1541 SM00411 bacterial (prokaryotic) histone like domain YE1542 SM00849 Metallo-beta-lactamase superfamily YE1543 SM00382 ATPases associated with a variety of cellular activities YE1545 SM01150 YE1545 YE1546 SM00357 Cold shock protein domain YE1547 SM00357 Cold shock protein domain YE1559 SM00849 Metallo-beta-lactamase superfamily YE1560 SM00052 Putative diguanylate phosphodiesterase YE1571 SM00981 YE1571 YE1572 SM00382 ATPases associated with a variety of cellular activities YE1576 SM00825 Beta-ketoacyl synthase YE1587 SM00851 MGS-like domain YE1589 SM00881 CoA binding domain YE1592 SM00992 Hemimethylated DNA-binding protein YccV like YE1593 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YE1599 SM00421 helix_turn_helix, Lux Regulon YE1602 SM01091 Transporter associated domain YE1613 SM00421 helix_turn_helix, Lux Regulon YE1614 SM00387 Histidine kinase-like ATPases YE1617 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YE1619 SM00450 Rhodanese Homology Domain YE1621 SM00421 helix_turn_helix, Lux Regulon YE1627 SM00316 Ribosomal protein S1-like RNA-binding domain YE1628 SM00363 S4 RNA-binding domain YE1634 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YE1635 SM00822 YE1635 YE1637 SM00825 Beta-ketoacyl synthase YE1658 SM00670 Large family of predicted nucleotide-binding domains YE1684 SM00387 Histidine kinase-like ATPases YE1691 SM00530 Helix-turn-helix XRE-family like proteins YE1694 SM01321 YE1694 YE1696 SM00382 ATPases associated with a variety of cellular activities YE1709 SM00487 DEAD-like helicases superfamily YE1709 SM00490 helicase superfamily c-terminal domain YE1709 SM00982 YE1709 YE1709 SM01058 CarD-like/TRCF domain YE1711 SM00382 ATPases associated with a variety of cellular activities YE1716 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YE1717 SM00387 Histidine kinase-like ATPases YE1717 SM00388 His Kinase A (phosphoacceptor) domain YE1718 SM00448 cheY-homologous receiver domain YE1718 SM00862 Transcriptional regulatory protein, C terminal YE1725 SM01329 YE1725 YE1731 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YE1731 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE1743 SM00342 helix_turn_helix, arabinose operon control protein YE1746 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YE1746 SM00091 PAS domain YE1746 SM00267 diguanylate cyclase YE1747 SM00090 RIO-like kinase YE1748 SM00382 ATPases associated with a variety of cellular activities YE1753 SM00342 helix_turn_helix, arabinose operon control protein YE1765 SM00357 Cold shock protein domain YE1770 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YE1770 SM00091 PAS domain YE1770 SM00267 diguanylate cyclase YE1778 SM01091 Transporter associated domain YE1785 SM00487 DEAD-like helicases superfamily YE1785 SM00490 helicase superfamily c-terminal domain YE1787 SM01022 YE1787 YE1790 SM00479 YE1790 YE1819 SM01252 YE1819 YE1830 SM00465 GIY-YIG type nucleases (URI domain) YE1831 SM00421 helix_turn_helix, Lux Regulon YE1831 SM00448 cheY-homologous receiver domain YE1835 SM00530 Helix-turn-helix XRE-family like proteins YE1843 SM00363 S4 RNA-binding domain YE1853 SM01022 YE1853 YE1855 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YE1855 SM00091 PAS domain YE1855 SM00267 diguanylate cyclase YE1856 SM00972 Spore Coat Protein U domain YE1859 SM00972 Spore Coat Protein U domain YE1860 SM00972 Spore Coat Protein U domain YE1861 SM00972 Spore Coat Protein U domain YE1866 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YE1867 SM00945 ProQ/FINO family YE1868 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YE1868 SM00245 tail specific protease YE1877 SM00346 helix_turn_helix isocitrate lyase regulation YE1878 SM00644 YE1878 YE1883 SM00382 ATPases associated with a variety of cellular activities YE1899 SM00382 ATPases associated with a variety of cellular activities YE1912 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YE1917 SM00873 B3/4 domain YE1917 SM00874 tRNA synthetase B5 domain YE1917 SM00896 Ferredoxin-fold anticodon binding domain YE1918 SM00411 bacterial (prokaryotic) histone like domain YE1923 SM00530 Helix-turn-helix XRE-family like proteins YE1942 SM00530 Helix-turn-helix XRE-family like proteins YE1943 SM00612 YE1943 YE1945 SM00903 Flavin reductase like domain YE1956 SM00421 helix_turn_helix, Lux Regulon YE1962 SM00642 Alpha-amylase domain YE1966 SM00014 Acid phosphatase homologues YE1968 SM00028 Tetratricopeptide repeats YE1973 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YE1976 SM01007 Class II Aldolase and Adducin N-terminal domain YE1978 SM00420 helix_turn_helix, Deoxyribose operon repressor YE1978 SM01134 YE1978 YE1982 SM00357 Cold shock protein domain YE1982 SM00955 YE1982 YE1987 SM00478 endonuclease III YE1987 SM00525 YE1987 YE1989 SM00900 YE1989 YE1991 SM00342 helix_turn_helix, arabinose operon control protein YE1998 SM00382 ATPases associated with a variety of cellular activities YE2000 SM00382 ATPases associated with a variety of cellular activities YE2004 SM00382 ATPases associated with a variety of cellular activities YE2006 SM00342 helix_turn_helix, arabinose operon control protein YE2012 SM00354 helix_turn _helix lactose operon repressor YE2017 SM00421 helix_turn_helix, Lux Regulon YE2034 SM00421 helix_turn_helix, Lux Regulon YE2040 SM00344 helix_turn_helix ASNC type YE2044 SM00062 Bacterial periplasmic substrate-binding proteins YE2049 SM00869 Autotransporter beta-domain YE2050 SM00421 helix_turn_helix, Lux Regulon YE2053 SM00354 helix_turn _helix lactose operon repressor YE2068 SM00098 Alkaline phosphatase homologues YE2069 SM00822 YE2069 YE2070 SM00871 Bacterial transcription activator, effector binding domain YE2075 SM00100 Cyclic nucleotide-monophosphate binding domain YE2075 SM00419 helix_turn_helix, cAMP Regulatory protein YE2078 SM01002 Alanine dehydrogenase/PNT, C-terminal domain YE2078 SM01003 Alanine dehydrogenase/PNT, N-terminal domain YE2083 SM00448 cheY-homologous receiver domain YE2083 SM00862 Transcriptional regulatory protein, C terminal YE2084 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE2084 SM00387 Histidine kinase-like ATPases YE2084 SM00388 His Kinase A (phosphoacceptor) domain YE2087 SM00020 Trypsin-like serine protease YE2088 SM00530 Helix-turn-helix XRE-family like proteins YE2090 SM00382 ATPases associated with a variety of cellular activities YE2090 SM00487 DEAD-like helicases superfamily YE2090 SM00490 helicase superfamily c-terminal domain YE2090 SM00847 Helicase associated domain (HA2) Add an annotation YE2102 SM00890 Domain of unknown function YE2105 SM01061 CAT RNA binding domain YE2112 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YE2114 SM00091 PAS domain YE2114 SM00382 ATPases associated with a variety of cellular activities YE2116 SM00953 YE2116 YE2122 SM00382 ATPases associated with a variety of cellular activities YE2128 SM00382 ATPases associated with a variety of cellular activities YE2129 SM00382 ATPases associated with a variety of cellular activities YE2139 SM00363 S4 RNA-binding domain YE2144 SM00347 helix_turn_helix multiple antibiotic resistance protein YE2154 SM00479 YE2154 YE2158 SM00354 helix_turn _helix lactose operon repressor YE2170 SM00382 ATPases associated with a variety of cellular activities YE2193 SM00382 ATPases associated with a variety of cellular activities YE2199 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YE2199 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YE2199 SM00493 YE2199 YE2204 SM00822 YE2204 YE2215 SM00749 bacterial OsmY and nodulation domain YE2225 SM00052 Putative diguanylate phosphodiesterase YE2227 SM00155 Phospholipase D. Active site motifs. YE2229 SM00382 ATPases associated with a variety of cellular activities YE2230 SM00382 ATPases associated with a variety of cellular activities YE2241 SM00528 Domain in histone-like proteins of HNS family YE2242 SM00984 UDP binding domain YE2243 SM00448 cheY-homologous receiver domain YE2257 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YE2257 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YE2257 SM00493 YE2257 YE2261 SM00870 YE2261 YE2265 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YE2272 SM00763 PrkA AAA domain YE2278 SM00052 Putative diguanylate phosphodiesterase YE2278 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YE2278 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YE2278 SM00091 PAS domain YE2278 SM00267 diguanylate cyclase YE2280 SM01005 Alanine racemase, C-terminal domain YE2283 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE2310 SM00232 JAB/MPN domain YE2316 SM00635 Bacterial Ig-like domain 2 YE2321 SM00635 Bacterial Ig-like domain 2 YE2350 SM00530 Helix-turn-helix XRE-family like proteins YE2355 SM00479 YE2355 YE2374 SM00341 Helicase and RNase D C-terminal YE2374 SM00474 3'-5' exonuclease YE2378 SM00491 YE2378 YE2387 SM00257 Lysin motif YE2389 SM00382 ATPases associated with a variety of cellular activities YE2392 SM00382 ATPases associated with a variety of cellular activities YE2393 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YE2406 SM00836 DALR anticodon binding domain YE2406 SM01016 Arginyl tRNA synthetase N terminal dom YE2407 SM00912 haemagglutination activity domain YE2421 SM00481 DNA polymerase alpha chain like domain YE2425 SM00267 diguanylate cyclase YE2431 SM00937 YE2431 YE2435 SM01400 YE2435 YE2448 SM00420 helix_turn_helix, Deoxyribose operon repressor YE2448 SM01134 YE2448 YE2451 SM00257 Lysin motif YE2460 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE2460 SM00866 YE2460 YE2470 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE2473 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE2473 SM00387 Histidine kinase-like ATPases YE2492 SM00382 ATPases associated with a variety of cellular activities YE2502 SM01007 Class II Aldolase and Adducin N-terminal domain YE2504 SM00420 helix_turn_helix, Deoxyribose operon repressor YE2504 SM01134 YE2504 YE2505 SM00387 Histidine kinase-like ATPases YE2506 SM00448 cheY-homologous receiver domain YE2514 SM00382 ATPases associated with a variety of cellular activities YE2516 SM00062 Bacterial periplasmic substrate-binding proteins YE2516 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YE2527 SM00342 helix_turn_helix, arabinose operon control protein YE2528 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YE2529 SM00478 endonuclease III YE2540 SM00382 ATPases associated with a variety of cellular activities YE2552 SM00047 Lysozyme subfamily 2 YE2561 SM00858 YE2561 YE2564 SM00634 Bacterial Ig-like domain (group 1) YE2570 SM00448 cheY-homologous receiver domain YE2571 SM00448 cheY-homologous receiver domain YE2572 SM00138 Methyltransferase, chemotaxis proteins YE2573 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE2573 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE2573 SM00319 Homologues of the ligand binding domain of Tar YE2575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE2575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE2575 SM00319 Homologues of the ligand binding domain of Tar YE2576 SM00260 Two component signalling adaptor domain YE2577 SM00073 Histidine Phosphotransfer domain YE2577 SM00260 Two component signalling adaptor domain YE2577 SM00387 Histidine kinase-like ATPases YE2577 SM01231 YE2577 YE2584 SM00829 Enoylreductase YE2585 SM00831 Cation transporter/ATPase, N-terminus YE2588 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE2588 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE2590 SM00357 Cold shock protein domain YE2591 SM00354 helix_turn _helix lactose operon repressor YE2592 SM01038 Beta galactosidase small chain YE2595 SM00829 Enoylreductase YE2597 SM00344 helix_turn_helix ASNC type YE2608 SM00382 ATPases associated with a variety of cellular activities YE2614 SM00382 ATPases associated with a variety of cellular activities YE2615 SM00382 ATPases associated with a variety of cellular activities YE2616 SM00342 helix_turn_helix, arabinose operon control protein YE2617 SM00823 Phosphopantetheine attachment site YE2618 SM00822 YE2618 YE2618 SM00823 Phosphopantetheine attachment site YE2618 SM00824 Thioesterase YE2618 SM00825 Beta-ketoacyl synthase YE2618 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YE2620 SM00824 Thioesterase YE2632 SM00490 helicase superfamily c-terminal domain YE2653 SM00764 Citrate lyase ligase C-terminal domain YE2654 SM00091 PAS domain YE2654 SM00387 Histidine kinase-like ATPases YE2655 SM00448 cheY-homologous receiver domain YE2656 SM00421 helix_turn_helix, Lux Regulon YE2656 SM00448 cheY-homologous receiver domain YE2657 SM00387 Histidine kinase-like ATPases YE2661 SM00382 ATPases associated with a variety of cellular activities YE2662 SM00421 helix_turn_helix, Lux Regulon YE2662 SM00448 cheY-homologous receiver domain YE2663 SM00062 Bacterial periplasmic substrate-binding proteins YE2663 SM00387 Histidine kinase-like ATPases YE2663 SM00388 His Kinase A (phosphoacceptor) domain YE2663 SM00448 cheY-homologous receiver domain YE2670 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE2673 SM00260 Two component signalling adaptor domain YE2673 SM00448 cheY-homologous receiver domain YE2675 SM00420 helix_turn_helix, Deoxyribose operon repressor YE2675 SM01134 YE2675 YE2696 SM00382 ATPases associated with a variety of cellular activities YE2696 SM01086 C-terminal, D2-small domain, of ClpB protein YE2705 SM00421 helix_turn_helix, Lux Regulon YE2708 SM00855 Phosphoglycerate mutase family YE2712 SM00382 ATPases associated with a variety of cellular activities YE2726 SM00342 helix_turn_helix, arabinose operon control protein YE2728 SM00877 YE2728 YE2729 SM00877 YE2729 YE2735 SM00877 YE2735 YE2736 SM00877 YE2736 YE2744 SM00877 YE2744 YE2745 SM00877 YE2745 YE2752 SM00382 ATPases associated with a variety of cellular activities YE2762 SM00382 ATPases associated with a variety of cellular activities YE2773 SM01350 YE2773 YE2779 SM01091 Transporter associated domain YE2794 SM00919 Malic enzyme, NAD binding domain YE2794 SM01274 YE2794 YE2810 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YE2811 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YE2811 SM00382 ATPases associated with a variety of cellular activities YE2814 SM00382 ATPases associated with a variety of cellular activities YE2816 SM00354 helix_turn _helix lactose operon repressor YE2821 SM00829 Enoylreductase YE2825 SM00382 ATPases associated with a variety of cellular activities YE2828 SM00852 Probable molybdopterin binding domain YE2830 SM01276 YE2830 YE2831 SM00382 ATPases associated with a variety of cellular activities YE2839 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. YE2845 SM00062 Bacterial periplasmic substrate-binding proteins YE2845 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YE2847 SM00382 ATPases associated with a variety of cellular activities YE2848 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YE2848 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE2850 SM00903 Flavin reductase like domain YE2855 SM00487 DEAD-like helicases superfamily YE2855 SM00488 YE2855 YE2855 SM00491 YE2855 YE2863 SM00382 ATPases associated with a variety of cellular activities YE2868 SM00450 Rhodanese Homology Domain YE2869 SM00382 ATPases associated with a variety of cellular activities YE2878 SM00382 ATPases associated with a variety of cellular activities YE2881 SM00507 HNH nucleases YE2882 SM01118 YE2882 YE2889 SM00487 DEAD-like helicases superfamily YE2889 SM00490 helicase superfamily c-terminal domain YE2892 SM00382 ATPases associated with a variety of cellular activities YE2899 SM00729 Elongator protein 3, MiaB family, Radical SAM YE2902 SM00487 DEAD-like helicases superfamily YE2902 SM00490 helicase superfamily c-terminal domain YE2903 SM00382 ATPases associated with a variety of cellular activities YE2907 SM00729 Elongator protein 3, MiaB family, Radical SAM YE2907 SM00876 Biotin and Thiamin Synthesis associated domain YE2911 SM00382 ATPases associated with a variety of cellular activities YE2915 SM00382 ATPases associated with a variety of cellular activities YE2923 SM00477 DNA/RNA non-specific endonuclease YE2923 SM00892 DNA/RNA non-specific endonuclease YE2924 SM00855 Phosphoglycerate mutase family YE2941 SM00881 CoA binding domain YE2944 SM00861 Transketolase, pyrimidine binding domain YE2954 SM00797 Allophanate hydrolase subunit 2 YE2955A SM00796 Allophanate hydrolase subunit 1 YE2963 SM00387 Histidine kinase-like ATPases YE2963 SM00388 His Kinase A (phosphoacceptor) domain YE2964 SM00448 cheY-homologous receiver domain YE2964 SM00862 Transcriptional regulatory protein, C terminal YE2971 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE2974 SM01081 Putative carbohydrate binding domain YE2985 SM00729 Elongator protein 3, MiaB family, Radical SAM YE2988 SM00116 Domain in cystathionine beta-synthase and other proteins. YE2988 SM01091 Transporter associated domain YE2991 SM00062 Bacterial periplasmic substrate-binding proteins YE2994 SM00382 ATPases associated with a variety of cellular activities YE3005 SM00936 Penicillin-binding protein 5, C-terminal domain YE3008 SM00729 Elongator protein 3, MiaB family, Radical SAM YE3010 SM00267 diguanylate cyclase YE3012 SM00357 Cold shock protein domain YE3014 SM00421 helix_turn_helix, Lux Regulon YE3019 SM00382 ATPases associated with a variety of cellular activities YE3022 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YE3024 SM00448 cheY-homologous receiver domain YE3024 SM00862 Transcriptional regulatory protein, C terminal YE3025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE3025 SM00387 Histidine kinase-like ATPases YE3025 SM00388 His Kinase A (phosphoacceptor) domain YE3048 SM00840 YE3048 YE3051 SM01001 AIR carboxylase YE3054 SM00382 ATPases associated with a variety of cellular activities YE3056 SM00822 YE3056 YE3058 SM00244 prohibitin homologues YE3060 SM00422 helix_turn_helix, mercury resistance YE3090 SM00387 Histidine kinase-like ATPases YE3091 SM00493 YE3091 YE3093 SM00382 ATPases associated with a variety of cellular activities YE3111 SM00382 ATPases associated with a variety of cellular activities YE3120 SM00938 Nitrogen regulatory protein P-II YE3121 SM00382 ATPases associated with a variety of cellular activities YE3122 SM00382 ATPases associated with a variety of cellular activities YE3123 SM00344 helix_turn_helix ASNC type YE3129 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YE3131 SM00411 bacterial (prokaryotic) histone like domain YE3132 SM00382 ATPases associated with a variety of cellular activities YE3132 SM00464 Found in ATP-dependent protease La (LON) YE3133 SM00382 ATPases associated with a variety of cellular activities YE3133 SM00994 ClpX C4-type zinc finger YE3133 SM01086 C-terminal, D2-small domain, of ClpB protein YE3151 SM00981 YE3151 YE3155 SM00861 Transketolase, pyrimidine binding domain YE3165 SM01323 YE3165 YE3177 SM00642 Alpha-amylase domain YE3181 SM00091 PAS domain YE3181 SM00387 Histidine kinase-like ATPases YE3181 SM00388 His Kinase A (phosphoacceptor) domain YE3182 SM00448 cheY-homologous receiver domain YE3182 SM00862 Transcriptional regulatory protein, C terminal YE3196 SM01068 Putative carbohydrate binding domain YE3200 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE3200 SM00866 YE3200 YE3202 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YE3218 SM00900 YE3218 YE3226 SM00710 Parallel beta-helix repeats YE3226 SM00912 haemagglutination activity domain YE3233 SM01007 Class II Aldolase and Adducin N-terminal domain YE3240 SM00347 helix_turn_helix multiple antibiotic resistance protein YE3244 SM00967 RNA 2'-O ribose methyltransferase substrate binding YE3246 SM01144 YE3246 YE3247 SM00881 CoA binding domain YE3248 SM00155 Phospholipase D. Active site motifs. YE3253 SM00382 ATPases associated with a variety of cellular activities YE3253 SM00930 YE3253 YE3261 SM01322 YE3261 YE3265 SM00977 TilS substrate C-terminal domain YE3269 SM00481 DNA polymerase alpha chain like domain YE3275 SM00935 Outer membrane protein (OmpH-like) YE3277 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YE3286 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YE3297 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YE3297 SM00475 5'-3' exonuclease YE3306 SM00925 MltA specific insert domain YE3307 SM00646 YE3307 YE3319 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YE3322 SM00927 DNA mismatch repair enzyme MutH YE3327 SM00563 Phosphate acyltransferases YE3331 SM00354 helix_turn _helix lactose operon repressor YE3336 SM00849 Metallo-beta-lactamase superfamily YE3338 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE3338 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE3338 SM00319 Homologues of the ligand binding domain of Tar YE3340 SM00862 Transcriptional regulatory protein, C terminal YE3348 SM00382 ATPases associated with a variety of cellular activities YE3352 SM00947 Carbonic anhydrase YE3354 SM00822 YE3354 YE3356 SM00271 DnaJ molecular chaperone homology domain YE3357 SM00354 helix_turn _helix lactose operon repressor YE3361 SM00344 helix_turn_helix ASNC type YE3362 SM00091 PAS domain YE3362 SM00267 diguanylate cyclase YE3366 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YE3383 SM00387 Histidine kinase-like ATPases YE3383 SM00388 His Kinase A (phosphoacceptor) domain YE3384 SM00448 cheY-homologous receiver domain YE3384 SM00862 Transcriptional regulatory protein, C terminal YE3396 SM01011 Aminopeptidase P, N-terminal domain YE3415 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YE3416 SM00861 Transketolase, pyrimidine binding domain YE3423 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YE3424 SM00731 SprT homologues. YE3429 SM00732 Likely ribonuclease with RNase H fold. YE3436 SM01152 YE3436 YE3438 SM00729 Elongator protein 3, MiaB family, Radical SAM YE3443 SM00478 endonuclease III YE3443 SM00525 YE3443 YE3463 SM00954 Region found in RelA / SpoT proteins YE3472 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YE3473 SM00382 ATPases associated with a variety of cellular activities YE3478 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YE3496A SM00530 Helix-turn-helix XRE-family like proteins YE3544 SM00382 ATPases associated with a variety of cellular activities YE3549 SM00342 helix_turn_helix, arabinose operon control protein YE3560 SM00421 helix_turn_helix, Lux Regulon YE3560 SM00448 cheY-homologous receiver domain YE3561 SM00062 Bacterial periplasmic substrate-binding proteins YE3561 SM00387 Histidine kinase-like ATPases YE3561 SM00388 His Kinase A (phosphoacceptor) domain YE3561 SM00448 cheY-homologous receiver domain YE3566 SM00382 ATPases associated with a variety of cellular activities YE3578 SM00421 helix_turn_helix, Lux Regulon YE3578 SM00448 cheY-homologous receiver domain YE3579 SM00062 Bacterial periplasmic substrate-binding proteins YE3579 SM00387 Histidine kinase-like ATPases YE3579 SM00388 His Kinase A (phosphoacceptor) domain YE3579 SM00448 cheY-homologous receiver domain YE3583 SM00382 ATPases associated with a variety of cellular activities YE3589 SM00354 helix_turn _helix lactose operon repressor YE3597 SM00052 Putative diguanylate phosphodiesterase YE3597 SM00091 PAS domain YE3597 SM00267 diguanylate cyclase YE3611 SM00862 Transcriptional regulatory protein, C terminal YE3615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE3621 SM00382 ATPases associated with a variety of cellular activities YE3649 SM00342 helix_turn_helix, arabinose operon control protein YE3653 SM00729 Elongator protein 3, MiaB family, Radical SAM YE3655 SM00563 Phosphate acyltransferases YE3656 SM00434 DNA Topoisomerase IV YE3660 SM00387 Histidine kinase-like ATPases YE3660 SM00433 TopoisomeraseII YE3675 SM01118 YE3675 YE3676 SM00287 Bacterial SH3 domain homologues YE3677 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YE3679 SM00905 Dihydroneopterin aldolase YE3680 SM01207 YE3680 YE3683 SM00400 zinc finger YE3683 SM00493 YE3683 YE3683 SM00766 DNA primase DnaG DnaB-binding YE3700 SM00869 Autotransporter beta-domain YE3706 SM00858 YE3706 YE3710 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE3710 SM00895 YE3710 YE3722 SM00829 Enoylreductase YE3730 SM00749 bacterial OsmY and nodulation domain YE3733 SM00073 Histidine Phosphotransfer domain YE3733 SM00091 PAS domain YE3733 SM00387 Histidine kinase-like ATPases YE3733 SM00388 His Kinase A (phosphoacceptor) domain YE3733 SM00448 cheY-homologous receiver domain YE3734 SM00729 Elongator protein 3, MiaB family, Radical SAM YE3744 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YE3745 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YE3752 SM00382 ATPases associated with a variety of cellular activities YE3758 SM00382 ATPases associated with a variety of cellular activities YE3771 SM00460 Transglutaminase/protease-like homologues YE3773 SM00642 Alpha-amylase domain YE3775 SM00354 helix_turn _helix lactose operon repressor YE3776 SM00831 Cation transporter/ATPase, N-terminus YE3801 SM00316 Ribosomal protein S1-like RNA-binding domain YE3806 SM00052 Putative diguanylate phosphodiesterase YE3806 SM00267 diguanylate cyclase YE3807 SM00829 Enoylreductase YE3812 SM00878 Biotin carboxylase C-terminal domain YE3818 SM00267 diguanylate cyclase YE3821 SM00357 Cold shock protein domain YE3822 SM00357 Cold shock protein domain YE3823 SM00357 Cold shock protein domain YE3833 SM00062 Bacterial periplasmic substrate-binding proteins YE3836 SM00382 ATPases associated with a variety of cellular activities YE3842 SM00530 Helix-turn-helix XRE-family like proteins YE3848 SM01005 Alanine racemase, C-terminal domain YE3849 SM00382 ATPases associated with a variety of cellular activities YE3850 SM00829 Enoylreductase YE3857 SM00563 Phosphate acyltransferases YE3863 SM00382 ATPases associated with a variety of cellular activities YE3875 SM01018 B12 binding domain YE3876 SM00346 helix_turn_helix isocitrate lyase regulation YE3895 SM00422 helix_turn_helix, mercury resistance YE3898 SM00662 RNA polymerases D YE3899 SM00363 S4 RNA-binding domain YE3899 SM01390 YE3899 YE3912 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YE3913 SM01374 YE3913 YE3917 SM00322 K homology RNA-binding domain YE3920 SM01382 YE3920 YE3920 SM01383 YE3920 YE3924 SM01403 YE3924 YE3928 SM00838 Elongation factor G C-terminus YE3928 SM00889 Elongation factor G, domain IV YE3942 SM00382 ATPases associated with a variety of cellular activities YE3947 SM00382 ATPases associated with a variety of cellular activities YE3948 SM00062 Bacterial periplasmic substrate-binding proteins YE3955 SM00100 Cyclic nucleotide-monophosphate binding domain YE3955 SM00419 helix_turn_helix, cAMP Regulatory protein YE3959 SM00382 ATPases associated with a variety of cellular activities YE3962 SM00354 helix_turn _helix lactose operon repressor YE3984 SM00363 S4 RNA-binding domain YE3987 SM00420 helix_turn_helix, Deoxyribose operon repressor YE3987 SM01134 YE3987 YE3989 SM00450 Rhodanese Homology Domain YE3990 SM00421 helix_turn_helix, Lux Regulon YE3999 SM00899 YE3999 YE4000 SM00316 Ribosomal protein S1-like RNA-binding domain YE4000 SM00732 Likely ribonuclease with RNase H fold. YE4004 SM00448 cheY-homologous receiver domain YE4004 SM00862 Transcriptional regulatory protein, C terminal YE4005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE4005 SM00387 Histidine kinase-like ATPases YE4005 SM00388 His Kinase A (phosphoacceptor) domain YE4012 SM00642 Alpha-amylase domain YE4013 SM00642 Alpha-amylase domain YE4018 SM00859 Semialdehyde dehydrogenase, NAD binding domain YE4022 SM00354 helix_turn _helix lactose operon repressor YE4051 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YE4052 SM00235 Zinc-dependent metalloprotease YE4059 SM00869 Autotransporter beta-domain YE4063 SM00052 Putative diguanylate phosphodiesterase YE4071 SM00052 Putative diguanylate phosphodiesterase YE4072 SM00028 Tetratricopeptide repeats YE4079 SM00382 ATPases associated with a variety of cellular activities YE4080 SM00382 ATPases associated with a variety of cellular activities YE4084 SM00912 haemagglutination activity domain YE4086 SM00912 haemagglutination activity domain YE4088 SM00387 Histidine kinase-like ATPases YE4089 SM00421 helix_turn_helix, Lux Regulon YE4089 SM00448 cheY-homologous receiver domain YE4107 SM00354 helix_turn _helix lactose operon repressor YE4118 SM00342 helix_turn_helix, arabinose operon control protein YE4120 SM00382 ATPases associated with a variety of cellular activities YE4125 SM00342 helix_turn_helix, arabinose operon control protein YE4129 SM00530 Helix-turn-helix XRE-family like proteins YE4139 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE4139 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE4139 SM01358 YE4139 YE4142 SM00966 SpoVT / AbrB like domain YE4144 SM00345 helix_turn_helix gluconate operon transcriptional repressor YE4160 SM00642 Alpha-amylase domain YE4170 SM00387 Histidine kinase-like ATPases YE4170 SM00433 TopoisomeraseII YE4172 SM00480 DNA polymerase III beta subunit YE4173 SM00382 ATPases associated with a variety of cellular activities YE4173 SM00760 Bacterial dnaA protein helix-turn-helix domain YE4181 SM00382 ATPases associated with a variety of cellular activities YE4181 SM00930 YE4181 YE4183 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YE4183 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YE4185 SM00387 Histidine kinase-like ATPases YE4185 SM00388 His Kinase A (phosphoacceptor) domain YE4186 SM00421 helix_turn_helix, Lux Regulon YE4186 SM00448 cheY-homologous receiver domain YE4193 SM00062 Bacterial periplasmic substrate-binding proteins YE4194 SM00194 Protein tyrosine phosphatase, catalytic domain YE4194 SM00404 Protein tyrosine phosphatase, catalytic domain motif YE4198 SM00382 ATPases associated with a variety of cellular activities YE4206 SM00382 ATPases associated with a variety of cellular activities YE4215 SM01228 YE4215 YEP0045 SM00729 Elongator protein 3, MiaB family, Radical SAM