locus_tag	old_locus_tag	gene	Name	start	end	strand	product	note	type	ID	NCBI
YE0001	YE0001		YE0001	270	710	-	flavodoxin	An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group	gene	gene0	http://www.ncbi.nlm.nih.gov/gene/?term=YE0001
YE0002	YE0002	asnC	asnC	802	1263	-	DNA-binding transcriptional regulator AsnC	transcriptional repressor of asnA which codes for aspartate-ammonia ligase	gene	gene1	http://www.ncbi.nlm.nih.gov/gene/?term=YE0002
YE0003	YE0003	asnA	asnA	1449	2441	+	asparagine synthetase AsnA	catalyzes the formation of asparagine from aspartate and ammonia	gene	gene2	http://www.ncbi.nlm.nih.gov/gene/?term=YE0003
YE0004	YE0004		YE0004	2595	3266	+	hypothetical protein	Similar to Ralstonia solanacearum probable transmembrane protein RSP0410 or RS00867 SWALL:Q8XSQ7 (EMBL:AL646078) (224 aa) fasta scores: E(): 7.3e-36%2C46.54 38d in 217 aa%2C and to Deinococcus radiodurans hypothetical protein DR0351 SWALL:Q9RXG2 (EMBL:AE001895) (227 aa) fasta scores: E(): 3.7e-17%2C 31.67 38d in 221 aa	gene	gene3	http://www.ncbi.nlm.nih.gov/gene/?term=YE0004
YE0005	YE0005	yieM	yieM	3276	4742	-	hypothetical protein	contains a von Willibrand factor type A domain%3B stimulates the ATPase activity of RavA	gene	gene4	http://www.ncbi.nlm.nih.gov/gene/?term=YE0005
YE0006	YE0006		YE0006	4746	6254	-	regulatory ATPase RavA	interacts with LdcI%2C lysine decarboxylase%3B may be active in late log/ early stationary phase	gene	gene5	http://www.ncbi.nlm.nih.gov/gene/?term=YE0006
YE0007	YE0007	trkD	trkD	6708	8435	+	potassium transport protein Kup	Responsible for the low-affinity transport of potassium into the cell%3B involved in potassium ion uptake under hyper-osmotic stress at a low pH	gene	gene6	http://www.ncbi.nlm.nih.gov/gene/?term=YE0007
YE0008	YE0008		YE0008	8606	9025	+	D-ribose pyranase	cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose%3B RbsD is required for efficient ribose utilization in E. coli%3B rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source	gene	gene7	http://www.ncbi.nlm.nih.gov/gene/?term=YE0008
YE0009	YE0009	rbsA	rbsA	9033	10535	+	D-ribose transporter ATP-binding protein	with RbsBCD acts to import ribose into the cell%3B RbsA contains 2 ATP-binding domain	gene	gene8	http://www.ncbi.nlm.nih.gov/gene/?term=YE0009
YE0010	YE0010	rbsC	rbsC	10623	11588	+	ribose ABC transporter permease	functions to transport ribose at high affinity%3B forms a complex with RbsA2C2B	gene	gene9	http://www.ncbi.nlm.nih.gov/gene/?term=YE0010
YE0011	YE0011	prlB	prlB	11760	12647	+	D-ribose transporter subunit RbsB	periplasmic substrate-binding component of the ATP-dependent ribose transport system	gene	gene10	http://www.ncbi.nlm.nih.gov/gene/?term=YE0011
YE0012	YE0012	rbsK	rbsK	12811	13737	+	ribokinase	catalyzes the formation of D-ribose 5-phosphate from ribose	gene	gene11	http://www.ncbi.nlm.nih.gov/gene/?term=YE0012
YE0012A	YE0012A	rbsR	rbsR	13740	14741	+	transcriptional repressor RbsR	DNA-binding transcriptional repressor of ribose metabolism	gene	gene12	http://www.ncbi.nlm.nih.gov/gene/?term=YE0012A
YE0013	YE0013		YE0013	14738	16162	-	membrane transport protein		gene	gene13	http://www.ncbi.nlm.nih.gov/gene/?term=YE0013
YE0014	YE0014		YE0014	16237	16926	-	GntR family transcriptional regulator		gene	gene14	http://www.ncbi.nlm.nih.gov/gene/?term=YE0014
YE0016	YE0016	mobB	mobB	23194	23721	-	molybdopterin-guanine dinucleotide biosynthesis protein B	in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway	gene	gene19	http://www.ncbi.nlm.nih.gov/gene/?term=YE0016
YE0017	YE0017	mobA	mobA	23718	24317	-	molybdopterin-guanine dinucleotide biosynthesis protein MobA	in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis	gene	gene20	http://www.ncbi.nlm.nih.gov/gene/?term=YE0017
YE0018	YE0018		YE0018	24462	24731	+	hypothetical protein		gene	gene21	http://www.ncbi.nlm.nih.gov/gene/?term=YE0018
YE0019	YE0019		YE0019	24823	25809	+	serine/threonine protein kinase	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro%3B specific substrate in vivo has not been identified yet%3B plays a role in long-term cell survival and expression of surface appendages	gene	gene22	http://www.ncbi.nlm.nih.gov/gene/?term=YE0019
YE0020	YE0020	dsbA	dsbA	25856	26479	+	protein disulfide isomerase I		gene	gene23	http://www.ncbi.nlm.nih.gov/gene/?term=YE0020
YE0021	YE0021	polA	polA	27070	29868	+	DNA polymerase I	has 3'-5' exonuclease%2C 5'-3' exonuclease and 5'-3'polymerase activities%2C primarily functions to fill gaps during DNA replication and repair	gene	gene24	http://www.ncbi.nlm.nih.gov/gene/?term=YE0021
YE0022	YE0022	engB	engB	30302	30955	-	ribosome biogenesis GTP-binding protein YsxC	binds guanine nucleotides%3B in Escherichia coli depletion results in defective cell division and filamentation%3B in Bacillus subtilis this gene is essential	gene	gene26	http://www.ncbi.nlm.nih.gov/gene/?term=YE0022
YE0023	YE0023		YE0023	31718	32284	+	hypothetical protein		gene	gene28	http://www.ncbi.nlm.nih.gov/gene/?term=YE0023
YE0024	YE0024	hemN	hemN	32467	33840	+	coproporphyrinogen III oxidase	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III	gene	gene29	http://www.ncbi.nlm.nih.gov/gene/?term=YE0024
YE0025	YE0025	glnG	glnG	33989	35401	-	nitrogen regulation protein NR(I)	response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes%3B interacts with sigma-54	gene	gene30	http://www.ncbi.nlm.nih.gov/gene/?term=YE0025
YE0026	YE0026	glnL	glnL	35409	36458	-	nitrogen regulation protein NR(II)	sensory histidine kinase in two-component regulatory system with GlnG%3B acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation	gene	gene31	http://www.ncbi.nlm.nih.gov/gene/?term=YE0026
YE0027	YE0027	glnA	glnA	36607	38016	-	glutamine synthetase	forms a homododecamer%3B forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate%3B also functions in the assimilation of ammonia%3B highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues%3B addition of adenylyl groups results in inactivation of the enzyme	gene	gene32	http://www.ncbi.nlm.nih.gov/gene/?term=YE0027
YE0029	YE0029	bipA	bipA	38529	40352	+	GTPase		gene	gene33	http://www.ncbi.nlm.nih.gov/gene/?term=YE0029
YE0030	YE0030		YE0030	40648	41235	+	phosphatase		gene	gene34	http://www.ncbi.nlm.nih.gov/gene/?term=YE0030
YE0031	YE0031	rbn	rbn	41328	42218	+	ribonuclease BN	RNase BN%3B required for 3' maturation of certain phage T4-encoded tRNAs%3B forms a dimer%3B specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence%3B 3' to 5' exoribonuclease	gene	gene35	http://www.ncbi.nlm.nih.gov/gene/?term=YE0031
YE0032	YE0032		YE0032	42225	42662	+	D-tyrosyl-tRNA(Tyr) deacylase	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr)%3B possible defense mechanism against a harmful effect of D-tyrosine	gene	gene36	http://www.ncbi.nlm.nih.gov/gene/?term=YE0032
YE0033	YE0033		YE0033	42914	43837	+	hypothetical protein		gene	gene37	http://www.ncbi.nlm.nih.gov/gene/?term=YE0033
YE0035	YE0035		YE0035	44431	45117	+	LuxR family transcription regulator	Similar to Pseudomonas aeruginosa probable transcriptional regulator PA1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 3e-09%2C 30.43 id in 207 aa%2C and to the C-terminal region of Vibrio cholerae LuxR family transcriptional regulator VCA1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 2.2e-10%2C 27.53 38d in 207 aa	gene	gene38	http://www.ncbi.nlm.nih.gov/gene/?term=YE0035
YE0036	YE0036		YE0036	45147	45833	+	LuxR family transcription regulator	Similar to Pseudomonas aeruginosa probable transcriptional regulator PA1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 2.2e-09%2C30.37 38d in 214 aa%2C and to the C-terminal region of Vibrio cholerae LuxR family transcriptional regulator VCA1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 6.6e-13%2C 30.43 38d in 207 aa	gene	gene39	http://www.ncbi.nlm.nih.gov/gene/?term=YE0036
YE0037	YE0037		YE0037	45863	46549	+	LuxR family transcription regulator	Similar to Pseudomonas aeruginosa probable transcriptional regulator PA347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 3.6e-10%2C30.47 38d in 210 aa%2C and to the C-terminal region of Vibrio cholerae LuxR family transcriptional regulator VCA1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 4.2e-10%2C 27.94 38d in 229 aa	gene	gene40	http://www.ncbi.nlm.nih.gov/gene/?term=YE0037
YE0038	YE0038		YE0038	46579	47265	+	LuxR family transcription regulator	Similar to Pseudomonas aeruginosa probable transcriptional regulator PA1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 1e-09%2C 31.28 id in 211 aa%2C and to the C-terminal region of Vibrio cholerae LuxR family transcriptional regulator VCA1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 4.1e-10%2C 27.94 38d in 229 aa	gene	gene41	http://www.ncbi.nlm.nih.gov/gene/?term=YE0038
YE0039	YE0039		YE0039	47294	47980	+	LuxR family transcription regulator	Similar to Pseudomonas aeruginosa probable transcriptional regulator PA1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 3.8e-08%2C29.04 38d in 210 aa%2C and to Vibrio cholerae LuxR family transcriptional regulator VCA1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 2.9e-10%2C 28.5 id in 214 aa	gene	gene42	http://www.ncbi.nlm.nih.gov/gene/?term=YE0039
YE0040	YE0040		YE0040	48077	49786	-	hypothetical protein		gene	gene43	http://www.ncbi.nlm.nih.gov/gene/?term=YE0040
YE0041	YE0041		YE0041	49933	51318	-	membrane permease		gene	gene44	http://www.ncbi.nlm.nih.gov/gene/?term=YE0041
YE0042	YE0042	gltC	gltC	51557	52771	+	sodium/glutamate symport carrier protein		gene	gene45	http://www.ncbi.nlm.nih.gov/gene/?term=YE0042
YE0043	YE0043	recG	recG	52840	54921	-	ATP-dependent DNA helicase RecG	catalyzes branch migration in Holliday junction intermediates	gene	gene46	http://www.ncbi.nlm.nih.gov/gene/?term=YE0043
YE0044	YE0044	spoU	spoU	54922	55614	-	tRNA guanosine-2'-O-methyltransferase	specifically modifies tRNA at position G18	gene	gene47	http://www.ncbi.nlm.nih.gov/gene/?term=YE0044
YE0045	YE0045	spoT	spoT	55620	57722	-	bifunctional (p)ppGpp synthetase II/ guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase		gene	gene48	http://www.ncbi.nlm.nih.gov/gene/?term=YE0045
YE0046	YE0046	rpoZ	rpoZ	57741	58016	-	DNA-directed RNA polymerase subunit omega	promotes RNA polymerase assembly or stability%3B latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits	gene	gene49	http://www.ncbi.nlm.nih.gov/gene/?term=YE0046
YE0047	YE0047	gmk	gmk	58071	58694	-	guanylate kinase	Essential for recycling GMP and indirectly%2C cGMP	gene	gene50	http://www.ncbi.nlm.nih.gov/gene/?term=YE0047
YE0048	YE0048	ligB	ligB	58977	60674	+	NAD-dependent DNA ligase LigB	this ligase is similar to LigA but it lacks the C-terminal BRCT domain%3B catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+	gene	gene51	http://www.ncbi.nlm.nih.gov/gene/?term=YE0048
YE0049	YE0049		YE0049	60692	61309	-	hypothetical protein		gene	gene52	http://www.ncbi.nlm.nih.gov/gene/?term=YE0049
YE0050	YE0050		YE0050	61529	62080	+	hypothetical protein	Poor database matches. Similar to an internal region of Halobacterium sp. hypothetical protein VNG2239c SWALL:Q9HN60 (EMBL:AE005109) (308 aa) fasta scores: E(): 2.7%2C 29.37 38d in 143 aa. Possible alternative translational start sites	gene	gene53	http://www.ncbi.nlm.nih.gov/gene/?term=YE0050
YE0051	YE0051	cru	cru	62176	63360	-	nucleoside permease	Similar to Escherichia coli nucleoside permease NupC or Cru SWALL:NUPC_ECOLI (SWALL:P33031) (400 aa) fasta scores: E(): 4.2e-106%2C 71.75 38d in 400 aa%2C and to Salmonella typhi nucleoside permease STY2650 SWALL:Q8Z4X4 (EMBL:AL627274) (400 aa) fasta scores: E(): 7.5e-106%2C71.75 38d in 400 aa	gene	gene54	http://www.ncbi.nlm.nih.gov/gene/?term=YE0051
YE0052	YE0052		YE0052	63619	64512	+	enoyl-CoA hydratase	regulator of pathogenicity factor RpfF%3B involved in synthesis of a diffusible signal factor involved in the regulation of extracellular enzymes	gene	gene55	http://www.ncbi.nlm.nih.gov/gene/?term=YE0052
YE0053	YE0053		YE0053	64538	66532	-	RNase II stability modulator	c-di-GMP phosphodiesterase%3B probably degrades signalling molecule c-di-GMP	gene	gene56	http://www.ncbi.nlm.nih.gov/gene/?term=YE0053
YE0055	YE0055		YE0055	67055	67885	-	metallo-beta-lactamase superfamily protein	Similar to Methanosarcina acetivorans metallo-beta-lactamase superfamily protein MA1962 SWALL:AAM05365 (EMBL:AE010879) (280 aa) fasta scores: E(): 3e-44%2C 44.84 38d in 281 aa%2C and to Clostridium acetobutylicum metal-dependent hydrolase of the beta-lactamase superfamily II CAC0535 SWALL:Q97LM2 (EMBL:AE007569) (268 aa) fasta scores: E(): 2.8e-41%2C41.66 38d in 276 aa	gene	gene57	http://www.ncbi.nlm.nih.gov/gene/?term=YE0055
YE0057	YE0057		YE0057	68287	69150	-	hypothetical protein		gene	gene58	http://www.ncbi.nlm.nih.gov/gene/?term=YE0057
YE0058	YE0058	rph	rph	69277	69993	+	ribonuclease PH	RNase PH%3B tRNA nucleotidyltransferase%3B forms hexamers in Bacillus subtilis%3B phosphoroltic 3'-5' exoribonuclease%3B involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs	gene	gene59	http://www.ncbi.nlm.nih.gov/gene/?term=YE0058
YE0059	YE0059	pyrE	pyrE	70145	70786	+	orotate phosphoribosyltransferase	involved in fifth step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate	gene	gene60	http://www.ncbi.nlm.nih.gov/gene/?term=YE0059
YE0060	YE0060	slmA	slmA	70864	71460	-	nucleoid occlusion protein	FtsZ binding protein%3B synthetically lethal with a defect in the Min system%3B this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly	gene	gene61	http://www.ncbi.nlm.nih.gov/gene/?term=YE0060
YE0061	YE0061	dut	dut	71581	72036	-	deoxyuridine 5'-triphosphate nucleotidohydrolase	catalyzes the formation of dUMP from dUTP	gene	gene62	http://www.ncbi.nlm.nih.gov/gene/?term=YE0061
YE0062	YE0062	dfp	dfp	72017	73246	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine%2C which is then decarboxylated to form 4'-phosphopantotheine	gene	gene63	http://www.ncbi.nlm.nih.gov/gene/?term=YE0062
YE0063	YE0063	radC	radC	73442	74110	+	DNA repair protein RadC	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase	gene	gene64	http://www.ncbi.nlm.nih.gov/gene/?term=YE0063
YE0064	YE0064	rpmB	rpmB	74374	74610	+	50S ribosomal protein L28	required for 70S ribosome assembly	gene	gene65	http://www.ncbi.nlm.nih.gov/gene/?term=YE0064
YE0065	YE0065	rpmG	rpmG	74622	74789	+	50S ribosomal protein L33	in Escherichia coli BM108%2C a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function%3B there are paralogous genes in several bacterial genomes%2C and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31%3B the proteins in this group lack the CXXC motif	gene	gene66	http://www.ncbi.nlm.nih.gov/gene/?term=YE0065
YE0066	YE0066	fpg	fpg	74876	75685	+	formamidopyrimidine-DNA glycosylase	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases	gene	gene67	http://www.ncbi.nlm.nih.gov/gene/?term=YE0066
YE0067	YE0067	coaD	coaD	75792	76271	-	phosphopantetheine adenylyltransferase	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA	gene	gene68	http://www.ncbi.nlm.nih.gov/gene/?term=YE0067
YE0068	YE0068	kdtX	kdtX	76268	77050	-	lipopolysaccharide core biosynthesis glycosyl transferase		gene	gene69	http://www.ncbi.nlm.nih.gov/gene/?term=YE0068
YE0069	YE0069	kdtA	kdtA	77051	78328	-	3-deoxy-D-manno-octulosonic-acid transferase	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A	gene	gene70	http://www.ncbi.nlm.nih.gov/gene/?term=YE0069
YE0070	YE0070	rfa-2	rfa-2	78869	79834	-	ADP-heptose--LPS heptosyltransferase		gene	gene71	http://www.ncbi.nlm.nih.gov/gene/?term=YE0070
YE0071	YE0071	rfaF	rfaF	79834	80898	-	ADP-heptose--LPS heptosyltransferase	catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core	gene	gene72	http://www.ncbi.nlm.nih.gov/gene/?term=YE0071
YE0072	YE0072	rfaD	rfaD	80929	81861	-	ADP-L-glycero-D-manno-heptose-6-epimerase	catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose	gene	gene73	http://www.ncbi.nlm.nih.gov/gene/?term=YE0072
YE0073	YE0073	kbl	kbl	82105	83316	+	2-amino-3-ketobutyrate coenzyme A ligase	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine	gene	gene74	http://www.ncbi.nlm.nih.gov/gene/?term=YE0073
YE0074	YE0074	tdh	tdh	83341	84366	+	L-threonine 3-dehydrogenase	converts threonine and NAD to 1%2C2-amino-3-oxobutanoate and NADH%3B functions in threonine catabolism	gene	gene75	http://www.ncbi.nlm.nih.gov/gene/?term=YE0074
YE0075	YE0075		YE0075	84557	85582	-	hypothetical protein	Similar to Escherichia coli hypothetical protein YibQ SWALL:YIBQ_ECOLI (SWALL:P37691) (319 aa) fasta scores: E(): 4e-63%2C 63.4 38d in 317 aa%2C and to Salmonella typhi putative exported protein STY4089 SWALL:Q8Z2F2 (EMBL:AL627280) (320 aa) fasta scores: E(): 1.3e-64%2C62.46 38d in 325 aa	gene	gene76	http://www.ncbi.nlm.nih.gov/gene/?term=YE0075
YE0076	YE0076		YE0076	85606	86973	-	hypothetical protein		gene	gene77	http://www.ncbi.nlm.nih.gov/gene/?term=YE0076
YE0077	YE0077		YE0077	86983	88530	-	phosphoglyceromutase	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate	gene	gene78	http://www.ncbi.nlm.nih.gov/gene/?term=YE0077
YE0078	YE0078		YE0078	88772	89206	+	hypothetical protein		gene	gene79	http://www.ncbi.nlm.nih.gov/gene/?term=YE0078
YE0079	YE0079	grxC	grxC	89256	89504	+	glutaredoxin 3		gene	gene80	http://www.ncbi.nlm.nih.gov/gene/?term=YE0079
YE0080	YE0080	secB	secB	89596	90066	+	preprotein translocase subunit SecB	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm%3B in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA	gene	gene81	http://www.ncbi.nlm.nih.gov/gene/?term=YE0080
YE0081	YE0081	gpsA	gpsA	90066	91085	+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate	gene	gene82	http://www.ncbi.nlm.nih.gov/gene/?term=YE0081
YE0082	YE0082	cysE	cysE	91211	92032	+	serine acetyltransferase	catalyzes the O-acetylation of serine	gene	gene83	http://www.ncbi.nlm.nih.gov/gene/?term=YE0082
YE0083	YE0083		YE0083	92213	92716	-	methyltransferase		gene	gene84	http://www.ncbi.nlm.nih.gov/gene/?term=YE0083
YE0084	YE0084		YE0084	92988	93986	+	bifunctional regulatory protein/DNA repair protein		gene	gene85	http://www.ncbi.nlm.nih.gov/gene/?term=YE0084
YE0085	YE0085	cpxA	cpxA	94056	95432	-	two-component sensor protein	part of two-component CpxA/CpxR system%3B senses envelope stress%3B upregulates a number of periplasmic folding and trafficking factors	gene	gene86	http://www.ncbi.nlm.nih.gov/gene/?term=YE0085
YE0086	YE0086	cpxR	cpxR	95429	96127	-	DNA-binding transcriptional regulator CpxR	response regulator in two-component regulatory system with CpxA%3B part of the envelope stress response system	gene	gene87	http://www.ncbi.nlm.nih.gov/gene/?term=YE0086
YE0087	YE0087	cpxP	cpxP	96348	96812	+	periplasmic stress adaptor protein CpxP	repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA%3B CpxP is degraded by DegP protease especially in the presence of misfolded substrates	gene	gene88	http://www.ncbi.nlm.nih.gov/gene/?term=YE0087
YE0088	YE0088	fieF	fieF	96944	97846	+	ferrous iron efflux protein F	member of cation diffusion facilitator family%3B CDF%3B membrane-bound%3B induced by both zinc and iron%2C but does not induce resistance to zinc%3B can transport zinc(II) in a proton-dependent manner%3B instead this protein induces iron resistance%3B forms dimers	gene	gene89	http://www.ncbi.nlm.nih.gov/gene/?term=YE0088
YE0089	YE0089	pfkA	pfkA	98096	99091	+	6-phosphofructokinase	catalyzes the formation of D-fructose 1%2C6-bisphosphate from D-fructose 6-phosphate in glycolysis	gene	gene90	http://www.ncbi.nlm.nih.gov/gene/?term=YE0089
YE0090	YE0090		YE0090	99139	100473	-	transposase for insertion sequence element IS1660	Highly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 9.8e-166%2C89.54 38d in 440 aa and to Pantoea agglomerans insertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 1.7e-86%2C 52.42 38d in 433 aa	gene	gene91	http://www.ncbi.nlm.nih.gov/gene/?term=YE0090
YE0091	YE0091	sbp1	sbp1	100712	101701	+	sulfate transporter subunit		gene	gene92	http://www.ncbi.nlm.nih.gov/gene/?term=YE0091
YE0093	YE0093	tpiA	tpiA	102318	103085	-	triosephosphate isomerase	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate	gene	gene93	http://www.ncbi.nlm.nih.gov/gene/?term=YE0093
YE0094	YE0094		YE0094	103214	103798	-	hypothetical protein		gene	gene94	http://www.ncbi.nlm.nih.gov/gene/?term=YE0094
YE0095	YE0095		YE0095	104103	104537	+	hypothetical protein		gene	gene95	http://www.ncbi.nlm.nih.gov/gene/?term=YE0095
YE0096	YE0096	fpr	fpr	104780	105526	-	ferredoxin-NADP reductase		gene	gene96	http://www.ncbi.nlm.nih.gov/gene/?term=YE0096
YE0097	YE0097	emrD	emrD	105845	107029	+	multidrug resistance protein D	multidrug efflux protein involved in adaptation to low energy shock	gene	gene97	http://www.ncbi.nlm.nih.gov/gene/?term=YE0097
YE0098	YE0098	glpX	glpX	107115	108125	-	fructose 1%2C6-bisphosphatase II	type II fructose 1%2C6-bisphosphatae%3B in Escherichia coli this protein forms a dimer and binds manganese	gene	gene98	http://www.ncbi.nlm.nih.gov/gene/?term=YE0098
YE0099	YE0099	glpK	glpK	108307	109830	-	glycerol kinase	Similar to Escherichia coli glycerol kinase GlpK SWALL:GLPK_ECOLI (SWALL:P08859) (501 aa) fasta scores: E(): 2e-178%2C 85.23 38d in 501 aa%2C and to Salmonella typhi glycerol kinase STY3784 SWALL:Q8Z2Y6 (EMBL:AL627279) (501 aa) fasta scores: E(): 1.6e-177%2C 85.17 38d in 499 aa	gene	gene99	http://www.ncbi.nlm.nih.gov/gene/?term=YE0099
YE0100	YE0100	glpF	glpF	109907	110755	-	glycerol uptake facilitator protein		gene	gene100	http://www.ncbi.nlm.nih.gov/gene/?term=YE0100
YE0101	YE0101		YE0101	111350	111589	+	hypothetical protein		gene	gene101	http://www.ncbi.nlm.nih.gov/gene/?term=YE0101
YE0102	YE0102	menG	menG	111726	112211	-	ribonuclease activity regulator protein RraA	regulator of RNase E%3B increases half-life and abundance of RNAs%3B interacts with RNase E possibly inhibiting catalytic activity	gene	gene102	http://www.ncbi.nlm.nih.gov/gene/?term=YE0102
YE0103	YE0103	menA	menA	112342	113196	-	1%2C4-dihydroxy-2-naphthoate octaprenyltransferase	catalyzes the formation of dimethylmenaquinone from 1%2C4-dihydroxy-2-naphthoate and octaprenyl diphosphate	gene	gene103	http://www.ncbi.nlm.nih.gov/gene/?term=YE0103
YE0104	YE0104	hslU	hslU	113424	114755	-	ATP-dependent protease ATP-binding subunit HslU	heat shock protein involved in degradation of misfolded proteins	gene	gene104	http://www.ncbi.nlm.nih.gov/gene/?term=YE0104
YE0105	YE0105	hslV	hslV	114810	115334	-	ATP-dependent protease peptidase subunit	heat shock protein involved in degradation of misfolded proteins	gene	gene105	http://www.ncbi.nlm.nih.gov/gene/?term=YE0105
YE0106	YE0106	ftsN	ftsN	115434	116297	-	cell division protein FtsN		gene	gene106	http://www.ncbi.nlm.nih.gov/gene/?term=YE0106
YE0107	YE0107	cytR	cytR	116363	117391	-	DNA-binding transcriptional regulator CytR	negatively controls the transcription initiation of genes such as deoCABD%2C udp%2C and cdd encoding catabolizing enzymes and nupC%2C nupG%2C and tsx encoding transporting and pore-forming proteins	gene	gene107	http://www.ncbi.nlm.nih.gov/gene/?term=YE0107
YE0108	YE0108	priA	priA	117622	119820	-	primosome assembly protein PriA	binding of PriA to forked DNA starts the assembly of the primosome%2C also possesses 3'-5' helicase activity	gene	gene108	http://www.ncbi.nlm.nih.gov/gene/?term=YE0108
YE0109	YE0109	rpmE	rpmE	120213	120431	+	50S ribosomal protein L31	RpmE%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome	gene	gene109	http://www.ncbi.nlm.nih.gov/gene/?term=YE0109
YE0110	YE0110	metJ	metJ	120521	120838	-	transcriptional repressor protein MetJ	when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis	gene	gene110	http://www.ncbi.nlm.nih.gov/gene/?term=YE0110
YE0111	YE0111	metB	metB	121214	122371	+	cystathionine gamma-synthase	catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine	gene	gene111	http://www.ncbi.nlm.nih.gov/gene/?term=YE0111
YE0112	YE0112	metL	metL	122379	124814	+	bifunctional aspartate kinase II/homoserine dehydrogenase II	multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways	gene	gene112	http://www.ncbi.nlm.nih.gov/gene/?term=YE0112
YE0113	YE0113		YE0113	124892	127000	-	hypothetical protein	Similar to several including: Clostridium acetobutylicum predicted permease Cac2003 SWALL:Q97HK8 (EMBL:AE007704) (832 aa) fasta scores: E(): 0.072%2C 24.67 id in 535 aa and Buchnera aphidicola OmpA-like protein precursor or bu332 SWALL:OMPA_BUCAI (SWALL:P57414) (349 aa) fasta scores: E(): 6.6%2C 24.17 38d in 273 aa. Note that this CDS lies within a localised low G+C region.	gene	gene113	http://www.ncbi.nlm.nih.gov/gene/?term=YE0113
YE0114	YE0114	metF	metF	127374	128258	+	5%2C10-methylenetetrahydrofolate reductase	MTHFR%3B catalyzes NADH-linked reduction of 5%2C10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor	gene	gene114	http://www.ncbi.nlm.nih.gov/gene/?term=YE0114
YE0115	YE0115		YE0115	128578	129780	+	hypothetical protein	Similar in parts to Campylobacter jejuni hypothetical protein Cj0849C SWALL:Q9PP74 (EMBL:AL139076) (719 aa) fasta scores: E(): 0.19%2C 22.86 38d in 258 aa and to Chlamydia pneumoniae phosphoenolpyruvate-protein phosphotransferase PtsI or Cpn0038 SWALL:PT1_CHLPN (SWALL:Q9Z9E3) (571 aa) fasta scores: E(): 3.5%2C 19.57 38d in 332 aa	gene	gene115	http://www.ncbi.nlm.nih.gov/gene/?term=YE0115
YE0116	YE0116	glu	glu	129861	132500	-	phosphoenolpyruvate carboxylase	catalyzes the formation of oxaloacetate from phosphoenolpyruvate	gene	gene116	http://www.ncbi.nlm.nih.gov/gene/?term=YE0116
YE0117	YE0117	argE	argE	132848	134032	-	acetylornithine deacetylase	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis	gene	gene117	http://www.ncbi.nlm.nih.gov/gene/?term=YE0117
YE0119	YE0119	argC	argC	134395	135399	+	N-acetyl-gamma-glutamyl-phosphate reductase	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis%3B involved in both the arginine and lysine biosynthetic pathways%3B lysine is produced via the AAA pathway%2C lysine from alpha-aminoadipate	gene	gene118	http://www.ncbi.nlm.nih.gov/gene/?term=YE0119
YE0120	YE0120	argB	argB	135487	136251	+	acetylglutamate kinase	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate	gene	gene119	http://www.ncbi.nlm.nih.gov/gene/?term=YE0120
YE0121	YE0121	argH	argH	136489	137862	+	argininosuccinate lyase	catalyzes the formation of arginine from (N-L-arginino)succinate	gene	gene120	http://www.ncbi.nlm.nih.gov/gene/?term=YE0121
YE0122	YE0122		YE0122	138584	140911	+	TonB dependent receptor protein		gene	gene121	http://www.ncbi.nlm.nih.gov/gene/?term=YE0122
YE0123	YE0123		YE0123	141014	141649	+	hemophore HasA		gene	gene122	http://www.ncbi.nlm.nih.gov/gene/?term=YE0123
YE0124	YE0124		YE0124	141797	142450	+	hemophore	Similar to Yersinia pestis hemophore HasA or Ypo3922 SWALL:Q8ZA90 (EMBL:AJ414159) (205 aa) fasta scores: E(): 1.5e-05%2C 28.05 38d in 221 aa. Note the product of this CDS is also significantly similar to the CDS directly upstream and downstream%2C YE0123%2C YE0125 and YE0126.	gene	gene123	http://www.ncbi.nlm.nih.gov/gene/?term=YE0124
YE0125	YE0125		YE0125	142509	143150	+	hemophore	Similar to Yersinia pestis hemophore HasA or Ypo3922 SWALL:Q8ZA90 (EMBL:AJ414159) (205 aa) fasta scores: E(): 1.8e-08%2C 33.48 38d in 218 aa and Serratia marcescens hemophore HasA SWALL:HASA_SERMA (SWALL:Q54450) (188 aa) fasta scores: E(): 0.051%2C 23.38 38d in 201 aa. Note the product of this CDS is also significantly similar to the CDS directly upstream and downstream%2C YE0123%2CYE0124 and YE0126.	gene	gene124	http://www.ncbi.nlm.nih.gov/gene/?term=YE0125
YE0126	YE0126		YE0126	143211	143819	+	hemophore	Similar to Yersinia pestis hemophore HasA or Ypo3922 SWALL:Q8ZA90 (EMBL:AJ414159) (205 aa) fasta scores: E(): 2.1e-13%2C 28.23 38d in 209 aa. Note the product of this CDS is also significantly similar to the CDS directly upstream%2C YE0123%2C YE0124 and YE0125.	gene	gene125	http://www.ncbi.nlm.nih.gov/gene/?term=YE0126
YE0127	YE0127		YE0127	144005	145786	+	ABC transporter		gene	gene126	http://www.ncbi.nlm.nih.gov/gene/?term=YE0127
YE0128	YE0128		YE0128	145917	147149	+	HlyD family secretion protein		gene	gene127	http://www.ncbi.nlm.nih.gov/gene/?term=YE0128
YE0129	YE0129		YE0129	147226	148026	+	hypothetical protein		gene	gene128	http://www.ncbi.nlm.nih.gov/gene/?term=YE0129
YE0130	YE0130	tpn1330	tpn1330	148114	149307	-	transposase for IS1330	Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:Q8RSF5 (EMBL:AJ344215) (397 aa) fasta scores: E(): 2.6e-162%2C99.24 38d in 397 aa. Also similar to Escherichia coli%2C and Salmonella typhi IS 10 transposase SWALL:Q53371 (EMBL:S67119) (402 aa) fasta scores: E(): 2e-43%2C 35.27 38d in 394 aa	gene	gene129	http://www.ncbi.nlm.nih.gov/gene/?term=YE0130
YE0131	YE0131		YE0131	149422	150870	-	dihydrolipoamide dehydrogenase	Catalyzes the oxidation of dihydrolipoamide to lipoamide	gene	gene130	http://www.ncbi.nlm.nih.gov/gene/?term=YE0131
YE0132	YE0132		YE0132	151070	151801	-	peroxiredoxin/glutaredoxin family protein		gene	gene131	http://www.ncbi.nlm.nih.gov/gene/?term=YE0132
YE0133	YE0133	oxyR	oxyR	151949	152881	+	DNA-binding transcriptional regulator OxyR	Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG%2C gor%2C ahpC%2C ahpF%2C oxyS%2C dps%2C fur and grxA	gene	gene132	http://www.ncbi.nlm.nih.gov/gene/?term=YE0133
YE0134	YE0134	sth	sth	152864	154264	-	soluble pyridine nucleotide transhydrogenase	catalyzes the conversion of NADPH to NADH	gene	gene133	http://www.ncbi.nlm.nih.gov/gene/?term=YE0134
YE0135	YE0135		YE0135	154470	155114	+	DNA-binding transcriptional repressor FabR	negatively controls the expression of fabA and fabB%2C genes involved in the unsaturated fatty acid biosynthesis	gene	gene134	http://www.ncbi.nlm.nih.gov/gene/?term=YE0135
YE0136	YE0136	yijD	yijD	155245	155607	+	hypothetical protein		gene	gene135	http://www.ncbi.nlm.nih.gov/gene/?term=YE0136
YE0138	YE0138	trmA	trmA	155840	156943	-	tRNA (uracil-5-)-methyltransferase	catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs	gene	gene136	http://www.ncbi.nlm.nih.gov/gene/?term=YE0138
YE0139	YE0139	btuB	btuB	157369	159267	+	vitamin B12/cobalamin outer membrane transporter	involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space	gene	gene138	http://www.ncbi.nlm.nih.gov/gene/?term=YE0139
YE0140	YE0140	dga	dga	159212	160075	+	glutamate racemase	converts L-glutamate to D-glutamate%2C a component of peptidoglycan	gene	gene139	http://www.ncbi.nlm.nih.gov/gene/?term=YE0140
YE0141	YE0141		YE0141	166814	167770	+	hypothetical protein		gene	gene147	http://www.ncbi.nlm.nih.gov/gene/?term=YE0141
YE0142	YE0142		YE0142	167855	169345	+	sugar transport system ATP-binding protein		gene	gene148	http://www.ncbi.nlm.nih.gov/gene/?term=YE0142
YE0143	YE0143		YE0143	169357	170376	+	sugar transport system permease		gene	gene149	http://www.ncbi.nlm.nih.gov/gene/?term=YE0143
YE0144	YE0144		YE0144	170376	171344	+	ABC transporter permease YjfF	membrane component of a putative sugar ABC transporter system	gene	gene150	http://www.ncbi.nlm.nih.gov/gene/?term=YE0144
YE0145	YE0145		YE0145	171355	172236	-	transcriptional regulator HdfR	Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon	gene	gene151	http://www.ncbi.nlm.nih.gov/gene/?term=YE0145
YE0146	YE0146		YE0146	172356	172694	+	hypothetical protein		gene	gene152	http://www.ncbi.nlm.nih.gov/gene/?term=YE0146
YE0147	YE0147		YE0147	172798	174321	-	magnesium chelatase family protein		gene	gene153	http://www.ncbi.nlm.nih.gov/gene/?term=YE0147
YE0148	YE0148	ilvG	ilvG	174892	176538	+	acetolactate synthase 2 catalytic subunit	catalyzes the formation of 2-acetolactate from pyruvate%3B also known as acetolactate synthase large subunit	gene	gene154	http://www.ncbi.nlm.nih.gov/gene/?term=YE0148
YE0149	YE0149	ilvM	ilvM	176535	176792	+	acetolactate synthase 2 regulatory subunit		gene	gene155	http://www.ncbi.nlm.nih.gov/gene/?term=YE0149
YE0150	YE0150	ilvE	ilvE	176815	177741	+	branched-chain amino acid aminotransferase	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids	gene	gene156	http://www.ncbi.nlm.nih.gov/gene/?term=YE0150
YE0151	YE0151	ilvD	ilvD	177853	179703	+	dihydroxy-acid dehydratase	catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis	gene	gene157	http://www.ncbi.nlm.nih.gov/gene/?term=YE0151
YE0152	YE0152	ilvA	ilvA	179709	181253	+	threonine dehydratase	threonine deaminase%3B threonine dehydratase%3B in Escherichia coli%2C IlvA is part of the isoleucine biosynthetic pathway	gene	gene158	http://www.ncbi.nlm.nih.gov/gene/?term=YE0152
YE0153	YE0153		YE0153	181439	182935	+	hypothetical protein	Similar in parts to many including: Plasmodium falciparum putative replication A protein Mal4p2.32 SWALL:Q9U0J0 (EMBL:AL035475) (1145 aa) fasta scores: E(): 0.55%2C 19.25 38d in 483 aa and Mycoplasma pulmonis hypothetical protein Mypu_4790 SWALL:Q98Q87 (EMBL:AL445564) (804 aa) fasta scores: E(): 2%2C 22.8 38d in 307 aa. Note the abundance of Asn residues in the predicted product of this CDS.	gene	gene159	http://www.ncbi.nlm.nih.gov/gene/?term=YE0153
YE0154	YE0154	ilvY	ilvY	182937	183818	-	DNA-binding transcriptional regulator IlvY	participates in controlling several genes involved in isoleucine and valine biosynthesis%3B activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate	gene	gene160	http://www.ncbi.nlm.nih.gov/gene/?term=YE0154
YE0155	YE0155	ilvC	ilvC	184071	185549	+	ketol-acid reductoisomerase	catalyzes the formation of (R)-2%2C3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis	gene	gene161	http://www.ncbi.nlm.nih.gov/gene/?term=YE0155
YE0157	YE0157		YE0157	185847	186524	-	chaperone protein		gene	gene162	http://www.ncbi.nlm.nih.gov/gene/?term=YE0157
YE0158	YE0158		YE0158	186571	187938	-	hypothetical protein		gene	gene163	http://www.ncbi.nlm.nih.gov/gene/?term=YE0158
YE0159	YE0159		YE0159	187956	190175	-	outer membrane usher protein		gene	gene164	http://www.ncbi.nlm.nih.gov/gene/?term=YE0159
YE0160	YE0160		YE0160	190653	191330	-	fimbrial chaperone		gene	gene165	http://www.ncbi.nlm.nih.gov/gene/?term=YE0160
YE0161	YE0161		YE0161	191517	192047	-	fimbrial protein		gene	gene166	http://www.ncbi.nlm.nih.gov/gene/?term=YE0161
YE0162	YE0162	ppiC	ppiC	192664	192945	-	peptidyl-prolyl cis-trans isomerase C		gene	gene167	http://www.ncbi.nlm.nih.gov/gene/?term=YE0162
YE0163	YE0163	rep	rep	193159	195183	+	ATP-dependent DNA helicase Rep	single-stranded DNA-dependent ATPase%3B initiates unwinding at a nick in the DNA%3B involved in DNA replication	gene	gene168	http://www.ncbi.nlm.nih.gov/gene/?term=YE0163
YE0164	YE0164	pehX	pehX	195239	197065	-	exo-poly-alpha-D-galacturonosidase	Highly similar to the plant pathogenic Erwinia chrysanthemi exo-poly-alpha-D-galacturonosidase PehX SWALL:PEHX_ERWCH (SWALL:P15922) (602 aa) fasta scores: E(): 3.6e-145%2C 61.23 38d in 601 aa. This CDS was previously sequenced as: Yersinia enterocolitica exopolygalacturonase SWALL:O68975 (EMBL:AF059505) (601 aa) fasta scores: E(): 0%2C 98.83 38d in 600 aa	gene	gene169	http://www.ncbi.nlm.nih.gov/gene/?term=YE0164
YE0165	YE0165	gppA	gppA	197407	198903	-	guanosine pentaphosphate phosphohydrolase	catalyzes the conversion of guanosine 5'-triphosphate%2C3'-diphosphate (pppGpp) to guanosine 5'-diphosphate%2C3'-diphosphate (ppGpp)%3B pppGpp and ppGpp control the stringent response during amino acid starvation	gene	gene170	http://www.ncbi.nlm.nih.gov/gene/?term=YE0165
YE0166	YE0166	mmrA	mmrA	198907	199983	-	DEAD/DEAH box helicase		gene	gene171	http://www.ncbi.nlm.nih.gov/gene/?term=YE0166
YE0167	YE0167	fipA	fipA	200312	200638	+	thioredoxin 1		gene	gene172	http://www.ncbi.nlm.nih.gov/gene/?term=YE0167
YE0168	YE0168	rho	rho	201295	202554	+	transcription termination factor Rho	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes	gene	gene173	http://www.ncbi.nlm.nih.gov/gene/?term=YE0168
YE0169	YE0169	b3784	b3784	202836	203933	+	undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase		gene	gene174	http://www.ncbi.nlm.nih.gov/gene/?term=YE0169
YE0170	YE0170	b3785	b3785	203969	205030	+	lipopolysaccharide biosynthesis protein WzzE	Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein	gene	gene175	http://www.ncbi.nlm.nih.gov/gene/?term=YE0170
YE0171	YE0171	nfrC	nfrC	205110	206240	+	UDP-N-acetylglucosamine 2-epimerase		gene	gene176	http://www.ncbi.nlm.nih.gov/gene/?term=YE0171
YE0172	YE0172	wecC	wecC	206237	207499	+	UDP-N-acetyl-D-mannosamine dehydrogenase	catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid	gene	gene177	http://www.ncbi.nlm.nih.gov/gene/?term=YE0172
YE0173	YE0173	rffG	rffG	207496	208563	+	dTDP-D-glucose-4%2C6-dehydratase		gene	gene178	http://www.ncbi.nlm.nih.gov/gene/?term=YE0173
YE0174	YE0174	rffH	rffH	208794	209675	+	glucose-1-phosphate thymidylyltransferase		gene	gene179	http://www.ncbi.nlm.nih.gov/gene/?term=YE0174
YE0175	YE0175	b3790	b3790	209764	210390	+	TDP-fucosamine acetyltransferase		gene	gene180	http://www.ncbi.nlm.nih.gov/gene/?term=YE0175
YE0176	YE0176	b3791	b3791	210392	211522	+	TDP-4-oxo-6-deoxy-D-glucose transaminase	catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis	gene	gene181	http://www.ncbi.nlm.nih.gov/gene/?term=YE0176
YE0177	YE0177	b3792	b3792	211524	212780	+	lipopolysaccharide biosynthesis protein		gene	gene182	http://www.ncbi.nlm.nih.gov/gene/?term=YE0177
YE0178	YE0178		YE0178	212803	213888	+	4-alpha-L-fucosyltransferase	catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis	gene	gene183	http://www.ncbi.nlm.nih.gov/gene/?term=YE0178
YE0179	YE0179	rffT	rffT	213885	215261	+	common antigen polymerase	enterobacterial common antigen polymerase	gene	gene184	http://www.ncbi.nlm.nih.gov/gene/?term=YE0179
YE0180	YE0180	rffM	rffM	215354	216028	+	UDP-N-acetyl-D-mannosaminuronic acid transferase		gene	gene185	http://www.ncbi.nlm.nih.gov/gene/?term=YE0180
YE0181	YE0181		YE0181	216379	217770	+	transport protein YifK	uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters%3B unknown function	gene	gene186	http://www.ncbi.nlm.nih.gov/gene/?term=YE0181
YE0184	YE0184	hemY	hemY	219361	220560	-	protoheme IX biogenesis protein		gene	gene191	http://www.ncbi.nlm.nih.gov/gene/?term=YE0184
YE0185	YE0185	hemX	hemX	220563	221687	-	uroporphyrinogen III C-methyltransferase		gene	gene192	http://www.ncbi.nlm.nih.gov/gene/?term=YE0185
YE0186	YE0186	hemD	hemD	221720	222466	-	uroporphyrinogen-III synthase	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane%3B functions in tetrapyrrole and heme biosynthesis	gene	gene193	http://www.ncbi.nlm.nih.gov/gene/?term=YE0186
YE0187	YE0187	hemC	hemC	222463	223404	-	porphobilinogen deaminase	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis	gene	gene194	http://www.ncbi.nlm.nih.gov/gene/?term=YE0187
YE0189	YE0189	cyaA	cyaA	223809	226355	+	adenylate cyclase	catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP	gene	gene195	http://www.ncbi.nlm.nih.gov/gene/?term=YE0189
YE0190	YE0190	cyaY	cyaY	226526	226846	-	frataxin-like protein	defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease%3B based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly	gene	gene196	http://www.ncbi.nlm.nih.gov/gene/?term=YE0190
YE0191	YE0191		YE0191	226960	227163	+	lipoprotein		gene	gene197	http://www.ncbi.nlm.nih.gov/gene/?term=YE0191
YE0192	YE0192	dapF	dapF	227252	228076	+	diaminopimelate epimerase	involved in lysine biosynthesis%3B DAP epimerase%3B produces DL-diaminopimelate from LL-diaminopimelate	gene	gene198	http://www.ncbi.nlm.nih.gov/gene/?term=YE0192
YE0193	YE0193		YE0193	228170	228874	+	hypothetical protein		gene	gene199	http://www.ncbi.nlm.nih.gov/gene/?term=YE0193
YE0194	YE0194	xerC	xerC	228871	229782	+	site-specific tyrosine recombinase XerC	site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs	gene	gene200	http://www.ncbi.nlm.nih.gov/gene/?term=YE0194
YE0195	YE0195		YE0195	229782	230498	+	flavin mononucleotide phosphatase	YigB%3B member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein%3B unknown function	gene	gene201	http://www.ncbi.nlm.nih.gov/gene/?term=YE0195
YE0196	YE0196	uvrD	uvrD	230599	232761	+	DNA-dependent helicase II	unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present%3B involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.	gene	gene202	http://www.ncbi.nlm.nih.gov/gene/?term=YE0196
YE0197	YE0197		YE0197	233186	233758	-	TetR family regulatory protein		gene	gene203	http://www.ncbi.nlm.nih.gov/gene/?term=YE0197
YE0198	YE0198		YE0198	234065	235297	+	hypothetical protein		gene	gene204	http://www.ncbi.nlm.nih.gov/gene/?term=YE0198
YE0199	YE0199		YE0199	235324	236154	+	hypothetical protein		gene	gene205	http://www.ncbi.nlm.nih.gov/gene/?term=YE0199
YE0200	YE0200	corA	corA	236657	237607	+	magnesium/nickel/cobalt transporter CorA	responsible for the influx of magnesium ions	gene	gene206	http://www.ncbi.nlm.nih.gov/gene/?term=YE0200
YE0201	YE0201	rarD	rarD	237795	238685	-	hypothetical protein		gene	gene207	http://www.ncbi.nlm.nih.gov/gene/?term=YE0201
YE0202	YE0202		YE0202	238765	239235	-	hypothetical protein		gene	gene208	http://www.ncbi.nlm.nih.gov/gene/?term=YE0202
YE0203	YE0203	pldA	pldA	239416	240294	+	phospholipase A	catalyzes the hydrolysis of phosphatidylcholine	gene	gene209	http://www.ncbi.nlm.nih.gov/gene/?term=YE0203
YE0204	YE0204	recQ	recQ	240371	242221	+	ATP-dependent DNA helicase RecQ	functions in blocking illegitimate recombination%2C enhancing topoisomerase activity%2C initiating SOS signaling and clearing blocked replication forks%3B component of the RecF recombinational pathway	gene	gene210	http://www.ncbi.nlm.nih.gov/gene/?term=YE0204
YE0205	YE0205	rhtC	rhtC	242284	242904	+	threonine efflux system		gene	gene211	http://www.ncbi.nlm.nih.gov/gene/?term=YE0205
YE0206	YE0206	rhtB	rhtB	242954	243574	-	homoserine/homoserine lactone efflux protein		gene	gene212	http://www.ncbi.nlm.nih.gov/gene/?term=YE0206
YE0207	YE0207	pldB	pldB	243778	244833	+	lysophospholipase L2	lecithinase B%3B catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine%3B can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates	gene	gene213	http://www.ncbi.nlm.nih.gov/gene/?term=YE0207
YE0208	YE0208		YE0208	244845	245654	+	sugar phosphatase	purine and pyrimidine nucleotides are secondary substrates%3B yigL expression is regulated by heat shock%2C osmotic shock and starvation of glucose%2C phosphate or ammonium	gene	gene214	http://www.ncbi.nlm.nih.gov/gene/?term=YE0208
YE0209	YE0209	glpQ	glpQ	245866	246864	-	glycerophosphodiester phosphodiesterase	hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols%3B periplasmic	gene	gene215	http://www.ncbi.nlm.nih.gov/gene/?term=YE0209
YE0210	YE0210	glpT	glpT	247088	248452	-	sn-glycerol-3-phosphate transporter	catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell	gene	gene216	http://www.ncbi.nlm.nih.gov/gene/?term=YE0210
YE0212	YE0212	glpA	glpA	248974	250629	+	sn-glycerol-3-phosphate dehydrogenase subunit A	anaerobic%2C catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor	gene	gene217	http://www.ncbi.nlm.nih.gov/gene/?term=YE0212
YE0213	YE0213	glpB	glpB	250619	251893	+	anaerobic glycerol-3-phosphate dehydrogenase subunit B	sn-glycerol-3-phosphate dehydrogenase (anaerobic)%3B catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate%3B part of GlpABC complex%3B presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters	gene	gene218	http://www.ncbi.nlm.nih.gov/gene/?term=YE0213
YE0214	YE0214	glpC	glpC	251932	253155	+	sn-glycerol-3-phosphate dehydrogenase subunit C	anaerobic%3B with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate	gene	gene219	http://www.ncbi.nlm.nih.gov/gene/?term=YE0214
YE0215	YE0215	dcrB	dcrB	253311	253754	-	hypothetical protein		gene	gene220	http://www.ncbi.nlm.nih.gov/gene/?term=YE0215
YE0216	YE0216	yhhQ	yhhQ	253896	254576	-	hypothetical protein		gene	gene221	http://www.ncbi.nlm.nih.gov/gene/?term=YE0216
YE0217	YE0217		YE0217	254823	255077	+	sulfur transfer protein SirA	TusA%3B transfers sulfur to TusBCD complex%3B involved in thiouridation of U34 position of some tRNAs	gene	gene222	http://www.ncbi.nlm.nih.gov/gene/?term=YE0217
YE0218	YE0218	zntA	zntA	255099	257429	-	zinc/cadmium/mercury/lead-transporting ATPase	P-type ATPase involved in the export of lead%2C cadmium%2C zinc and mercury	gene	gene223	http://www.ncbi.nlm.nih.gov/gene/?term=YE0218
YE0219	YE0219	yhhN	yhhN	257713	258339	-	hypothetical protein		gene	gene224	http://www.ncbi.nlm.nih.gov/gene/?term=YE0219
YE0221	YE0221		YE0221	258627	258947	+	hypothetical protein		gene	gene225	http://www.ncbi.nlm.nih.gov/gene/?term=YE0221
YE0222	YE0222		YE0222	258986	259369	+	hypothetical protein		gene	gene226	http://www.ncbi.nlm.nih.gov/gene/?term=YE0222
YE0223	YE0223	yhhL	yhhL	259410	259682	-	hypothetical protein		gene	gene227	http://www.ncbi.nlm.nih.gov/gene/?term=YE0223
YE0224	YE0224	rsmD	rsmD	259672	260355	-	16S rRNA m(2)G966-methyltransferase	catalyzes the methylation of 16S rRNA at position G966	gene	gene228	http://www.ncbi.nlm.nih.gov/gene/?term=YE0224
YE0225	YE0225	ftsY	ftsY	260574	262097	+	cell division protein		gene	gene229	http://www.ncbi.nlm.nih.gov/gene/?term=YE0225
YE0226	YE0226	ftsE	ftsE	262103	262771	+	cell division protein FtsE	putative ATP-binding protein of an ATP-binding cassette transporter%3B when bound to FtsX%2C FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions	gene	gene230	http://www.ncbi.nlm.nih.gov/gene/?term=YE0226
YE0227	YE0227	ftsX	ftsX	262860	263720	+	cell division protein FtsX	putative ABC transporter%2C membrane protein	gene	gene231	http://www.ncbi.nlm.nih.gov/gene/?term=YE0227
YE0228	YE0228	fam	fam	264131	264988	+	RNA polymerase factor sigma-32	binds with the catalytic core of RNA polymerase to produce the holoenzyme%3B this sigma factor is responsible for the expression of heat shock promoters	gene	gene232	http://www.ncbi.nlm.nih.gov/gene/?term=YE0228
YE0229	YE0229	yhhK	yhhK	265084	265476	-	acetyltransferase		gene	gene233	http://www.ncbi.nlm.nih.gov/gene/?term=YE0229
YE0230	YE0230	livJ	livJ	265898	267013	+	branched-chain amino acid-binding protein		gene	gene234	http://www.ncbi.nlm.nih.gov/gene/?term=YE0230
YE0231	YE0231	livH	livH	267172	268098	+	branched-chain amino acid transporter permease subunit LivH	LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter	gene	gene235	http://www.ncbi.nlm.nih.gov/gene/?term=YE0231
YE0232	YE0232	livM	livM	268095	269381	+	leucine/isoleucine/valine transporter permease subunit	Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine	gene	gene236	http://www.ncbi.nlm.nih.gov/gene/?term=YE0232
YE0233	YE0233	livG	livG	269378	270145	+	leucine/isoleucine/valine transporter ATP-binding subunit	Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine	gene	gene237	http://www.ncbi.nlm.nih.gov/gene/?term=YE0233
YE0234	YE0234	livF	livF	270190	270891	+	leucine/isoleucine/valine transporter ATP-binding subunit	with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine	gene	gene238	http://www.ncbi.nlm.nih.gov/gene/?term=YE0234
YE0235	YE0235		YE0235	270952	272022	-	hypothetical protein		gene	gene239	http://www.ncbi.nlm.nih.gov/gene/?term=YE0235
YE0236	YE0236		YE0236	272084	272602	-	hypothetical protein		gene	gene240	http://www.ncbi.nlm.nih.gov/gene/?term=YE0236
YE0237	YE0237		YE0237	272611	273240	-	hypothetical protein		gene	gene241	http://www.ncbi.nlm.nih.gov/gene/?term=YE0237
YE0238	YE0238		YE0238	273233	273919	-	hypothetical protein		gene	gene242	http://www.ncbi.nlm.nih.gov/gene/?term=YE0238
YE0239	YE0239		YE0239	273937	276249	-	hypothetical protein		gene	gene243	http://www.ncbi.nlm.nih.gov/gene/?term=YE0239
YE0240	YE0240		YE0240	276430	276906	-	hypothetical protein		gene	gene244	http://www.ncbi.nlm.nih.gov/gene/?term=YE0240
YE0241	YE0241	ugpB	ugpB	277469	278788	+	glycerol-3-phosphate transporter substrate-binding protein	with UgpACE is involved in the uptake of glycerol-3-phosphate	gene	gene245	http://www.ncbi.nlm.nih.gov/gene/?term=YE0241
YE0242	YE0242	ugpA	ugpA	278898	279785	+	glycerol-3-phosphate transporter permease	with UgpEC is involved in the uptake of glycerol-3-phosphate	gene	gene246	http://www.ncbi.nlm.nih.gov/gene/?term=YE0242
YE0243	YE0243	ugpE	ugpE	279782	280627	+	glycerol-3-phosphate transporter membrane protein	with UgpABC is involved in uptake of glycerol-3-phosphate	gene	gene247	http://www.ncbi.nlm.nih.gov/gene/?term=YE0243
YE0244	YE0244	ugpC	ugpC	280634	281722	+	glycerol-3-phosphate transporter ATP-binding subunit	part of the UgpABCE glycerol-3-phosphate uptake system	gene	gene248	http://www.ncbi.nlm.nih.gov/gene/?term=YE0244
YE0245	YE0245	ugpQ	ugpQ	281719	282459	+	glycerophosphodiester phosphodiesterase	hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol%3B induced when cells are starved for inorganic phosphate	gene	gene249	http://www.ncbi.nlm.nih.gov/gene/?term=YE0245
YE0246	YE0246		YE0246	282591	283550	+	hypothetical protein		gene	gene250	http://www.ncbi.nlm.nih.gov/gene/?term=YE0246
YE0247	YE0247	yigM	yigM	283705	284604	+	hypothetical protein		gene	gene251	http://www.ncbi.nlm.nih.gov/gene/?term=YE0247
YE0248	YE0248	metR	metR	284492	285445	-	LysR family transcriptional regulator		gene	gene252	http://www.ncbi.nlm.nih.gov/gene/?term=YE0248
YE0249	YE0249	metE	metE	285551	287827	+	5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine	gene	gene253	http://www.ncbi.nlm.nih.gov/gene/?term=YE0249
YE0250	YE0250		YE0250	287893	288603	-	carboxymethylenebutenolidase		gene	gene254	http://www.ncbi.nlm.nih.gov/gene/?term=YE0250
YE0251	YE0251	udp	udp	289388	290149	+	uridine phosphorylase	catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate%3B involved in the pyrimidine salvage pathway	gene	gene255	http://www.ncbi.nlm.nih.gov/gene/?term=YE0251
YE0252	YE0252		YE0252	290482	291279	+	hypothetical protein		gene	gene256	http://www.ncbi.nlm.nih.gov/gene/?term=YE0252
YE0253	YE0253		YE0253	291621	293438	+	carbon starvation protein		gene	gene257	http://www.ncbi.nlm.nih.gov/gene/?term=YE0253
YE0254	YE0254		YE0254	293567	294097	+	hypothetical protein		gene	gene258	http://www.ncbi.nlm.nih.gov/gene/?term=YE0254
YE0255	YE0255	rumC	rumC	294370	295824	+	DNA recombination protein		gene	gene259	http://www.ncbi.nlm.nih.gov/gene/?term=YE0255
YE0256	YE0256	ubiE	ubiE	295958	296713	+	ubiquinone/menaquinone biosynthesis methyltransferase	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone	gene	gene260	http://www.ncbi.nlm.nih.gov/gene/?term=YE0256
YE0257	YE0257		YE0257	296757	297380	+	hypothetical protein		gene	gene261	http://www.ncbi.nlm.nih.gov/gene/?term=YE0257
YE0258	YE0258	ubiB	ubiB	297377	299008	+	ubiquinone biosynthesis protein UbiB	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone%3B functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis%3B similar to eukaryotic proteins that exhibit kinase functions	gene	gene262	http://www.ncbi.nlm.nih.gov/gene/?term=YE0258
YE0259	YE0259	b3836	b3836	299209	299475	+	Sec-independent protein translocase protein TatA		gene	gene263	http://www.ncbi.nlm.nih.gov/gene/?term=YE0259
YE0260	YE0260	mtta2	mtta2	299479	300135	+	Sec-independent protein translocase protein TatB		gene	gene264	http://www.ncbi.nlm.nih.gov/gene/?term=YE0260
YE0261	YE0261	mttB	mttB	300138	300917	+	twin-arginine protein translocation system subunit TatC	with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane	gene	gene265	http://www.ncbi.nlm.nih.gov/gene/?term=YE0261
YE0262	YE0262	mttC	mttC	300973	301755	+	DNase TatD	magnesium dependent%3B not involved in the Sec-independent protein export system	gene	gene266	http://www.ncbi.nlm.nih.gov/gene/?term=YE0262
YE0263	YE0263	hemB	hemB	301770	302792	+	delta-aminolevulinic acid dehydratase	catalyzes the formation of porphobilinogen from 5-aminolevulinate	gene	gene267	http://www.ncbi.nlm.nih.gov/gene/?term=YE0263
YE0264	YE0264	rfaH	rfaH	302881	303369	-	transcriptional activator RfaH		gene	gene268	http://www.ncbi.nlm.nih.gov/gene/?term=YE0264
YE0265	YE0265		YE0265	303638	305134	+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol	gene	gene269	http://www.ncbi.nlm.nih.gov/gene/?term=YE0265
YE0266	YE0266	fre	fre	305189	305890	+	FMN reductase	NAD(P)H-flavin reductase%3B catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide%3B in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin	gene	gene270	http://www.ncbi.nlm.nih.gov/gene/?term=YE0266
YE0267	YE0267	fadA	fadA	305990	307153	-	3-ketoacyl-CoA thiolase	FadA%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadB%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids	gene	gene271	http://www.ncbi.nlm.nih.gov/gene/?term=YE0267
YE0268	YE0268	fadB	fadB	307165	309354	-	multifunctional fatty acid oxidation complex subunit alpha	includes enoyl-CoA hydratase%2C delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase%2C 3-hydroxyacyl-CoA dehydrogenase%2C and 3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities%3B forms a heterotetramer with FadA%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids	gene	gene272	http://www.ncbi.nlm.nih.gov/gene/?term=YE0268
YE0269	YE0269	pepQ	pepQ	309626	310975	+	proline dipeptidase	catalyzes the hydrolysis of dipeptides with a proline at the C-terminal%3B also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters	gene	gene273	http://www.ncbi.nlm.nih.gov/gene/?term=YE0269
YE0270	YE0270		YE0270	310975	311589	+			gene	gene274	http://www.ncbi.nlm.nih.gov/gene/?term=YE0270
YE0272	YE0272	trkH	trkH	311626	313077	+	potassium transporter		gene	gene275	http://www.ncbi.nlm.nih.gov/gene/?term=YE0272
YE0273	YE0273	hemG	hemG	313099	313632	+	protoporphyrinogen oxidase	catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX	gene	gene276	http://www.ncbi.nlm.nih.gov/gene/?term=YE0273
YE0274	YE0274	murB	murB	319709	320746	+	UDP-N-acetylenolpyruvoylglucosamine reductase	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis	gene	gene281	http://www.ncbi.nlm.nih.gov/gene/?term=YE0274
YE0275	YE0275	bioR	bioR	320743	321702	+	biotin--protein ligase	catalyzes the formation of biotinyl-5'-AMP%2C also acts as a transcriptional repressor of the biotin operon	gene	gene282	http://www.ncbi.nlm.nih.gov/gene/?term=YE0275
YE0276	YE0276	coaA	coaA	321742	322692	-	pantothenate kinase	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis	gene	gene283	http://www.ncbi.nlm.nih.gov/gene/?term=YE0276
YE0277	YE0277		YE0277	322902	323453	-	acetyltransferase		gene	gene284	http://www.ncbi.nlm.nih.gov/gene/?term=YE0277
YE0278	YE0278	tufA	tufA	324617	325801	+	elongation factor Tu	EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu	gene	gene290	http://www.ncbi.nlm.nih.gov/gene/?term=YE0278
YE0279	YE0279	secE	secE	326041	326424	+	preprotein translocase subunit SecE	forms a complex with SecY and SecG%3B SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane%2C a process driven by ATP and a proton-motive force	gene	gene291	http://www.ncbi.nlm.nih.gov/gene/?term=YE0279
YE0280	YE0280	nusG	nusG	326426	326971	+	transcription antitermination protein NusG	Modulates Rho-dependent transcription termination	gene	gene292	http://www.ncbi.nlm.nih.gov/gene/?term=YE0280
YE0281	YE0281	rplK	rplK	327165	327593	+	50S ribosomal protein L11	binds directly to 23S ribosomal RNA	gene	gene293	http://www.ncbi.nlm.nih.gov/gene/?term=YE0281
YE0282	YE0282	rplA	rplA	327597	328301	+	50S ribosomal protein L1	in Escherichia coli and Methanococcus%2C this protein autoregulates expression%3B the binding site in the mRNA mimics the binding site in the 23S rRNA	gene	gene294	http://www.ncbi.nlm.nih.gov/gene/?term=YE0282
YE0283	YE0283	rplJ	rplJ	328676	329179	+	50S ribosomal protein L10	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit	gene	gene295	http://www.ncbi.nlm.nih.gov/gene/?term=YE0283
YE0284	YE0284	rplL	rplL	329248	329616	+	50S ribosomal protein L7/L12	present in two forms%3B L12 is normal%2C while L7 is aminoacylated at the N-terminal serine%3B the only multicopy ribosomal protein%3B 4:1 ratio of L7/L12 per ribosome%3B two L12 dimers bind L10%3B critically important for translation efficiency and fidelity%3B stimulates GTPase activity of translation factors	gene	gene296	http://www.ncbi.nlm.nih.gov/gene/?term=YE0284
YE0286	YE0286	rpoB	rpoB	329960	333988	+	DNA-directed RNA polymerase subunit beta	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates%3B beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme	gene	gene297	http://www.ncbi.nlm.nih.gov/gene/?term=YE0286
YE0287	YE0287	rpoC	rpoC	334125	338345	+	DNA-directed RNA polymerase subunit beta'	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter	gene	gene298	http://www.ncbi.nlm.nih.gov/gene/?term=YE0287
YE0288	YE0288		YE0288	338397	339731	-	transposase for insertion sequence element IS1660	Highly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 6.4e-165%2C89.31 38d in 440 aa%2C and to Pantoea agglomerans insertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 9.5e-86%2C 52.19 38d in 433 aa	gene	gene299	http://www.ncbi.nlm.nih.gov/gene/?term=YE0288
YE0289	YE0289	thiH	thiH	339869	340999	-	thiamine biosynthesis protein ThiH	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS%3B with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine%2C cysteine and 1-deoxy-D-xylulose-5-phosphate%3B forms a complex with ThiG%3B contains an iron-sulfur center	gene	gene300	http://www.ncbi.nlm.nih.gov/gene/?term=YE0289
YE0290	YE0290	thiG	thiG	340992	341780	-	thiazole synthase	functions in thiamine (vitamin B1) biosynthesis%3B in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate	gene	gene301	http://www.ncbi.nlm.nih.gov/gene/?term=YE0290
YE0290A	YE0290A	thiS	thiS	341782	341997	-	sulfur carrier protein ThiS	with ThiF%2C ThiG%2C and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate	gene	gene302	http://www.ncbi.nlm.nih.gov/gene/?term=YE0290A
YE0291	YE0291	thiF	thiF	341994	342776	-	thiamine biosynthesis protein		gene	gene303	http://www.ncbi.nlm.nih.gov/gene/?term=YE0291
YE0292	YE0292	thiE	thiE	342760	343371	-	thiamine-phosphate pyrophosphorylase	catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate	gene	gene304	http://www.ncbi.nlm.nih.gov/gene/?term=YE0292
YE0293	YE0293	thiC	thiC	343427	345313	-	thiamine biosynthesis protein ThiC	required for the synthesis of the hydromethylpyrimidine moiety of thiamine	gene	gene305	http://www.ncbi.nlm.nih.gov/gene/?term=YE0293
YE0295	YE0295	rsd	rsd	345825	346328	-	anti-RNA polymerase sigma 70 factor	binds specifically to the major sigma factor sigma 70%3B active in stationary phase	gene	gene307	http://www.ncbi.nlm.nih.gov/gene/?term=YE0295
YE0296	YE0296	nudC	nudC	346420	347205	+	NADH pyrophosphatase	can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH%3B requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates	gene	gene308	http://www.ncbi.nlm.nih.gov/gene/?term=YE0296
YE0297	YE0297	hemE	hemE	347286	348353	+	uroporphyrinogen decarboxylase	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III	gene	gene309	http://www.ncbi.nlm.nih.gov/gene/?term=YE0297
YE0298	YE0298	nfi	nfi	348377	349081	+	endonuclease V	Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA%3B cleaves DNA containing urea residues%2C AP sites%2C base mismatches%2C insertion/deletion mismatches%2C flaps%2C and pseudo-Y structures	gene	gene310	http://www.ncbi.nlm.nih.gov/gene/?term=YE0298
YE0299	YE0299		YE0299	349127	349717	+	hypothetical protein		gene	gene311	http://www.ncbi.nlm.nih.gov/gene/?term=YE0299
YE0300	YE0300	hupA	hupA	349906	350181	+	transcriptional regulator HU subunit alpha	histone-like DNA-binding protein	gene	gene312	http://www.ncbi.nlm.nih.gov/gene/?term=YE0300
YE0301	YE0301	yjaH	yjaH	350186	350887	+	hypothetical protein		gene	gene313	http://www.ncbi.nlm.nih.gov/gene/?term=YE0301
YE0302	YE0302	purD	purD	350982	352277	-	phosphoribosylamine--glycine ligase	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis	gene	gene314	http://www.ncbi.nlm.nih.gov/gene/?term=YE0302
YE0303	YE0303	purH	purH	352303	353892	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	involved in de novo purine biosynthesis	gene	gene315	http://www.ncbi.nlm.nih.gov/gene/?term=YE0303
YE0304	YE0304		YE0304	360308	360706	+	hypothetical protein	Similar to several including: Yersinia pestis hypothetical protein Ypo2009A SWALL:Q8ZEY6 (EMBL:AJ414151) (104 aa) fasta scores: E(): 6.5e-31%2C 87.5 38d in 104 aa%2Cand in part to Salmonella typhimurium putative cytoplasmic protein Stm0948 SWALL:Q8ZQE1 (EMBL:AE008740) (133 aa) fasta scores: E(): 3.8e-16%2C 53 38d in 100 aa	gene	gene320	http://www.ncbi.nlm.nih.gov/gene/?term=YE0304
YE0305	YE0305		YE0305	360724	361521	+	transposase for insertion element IS1669	Similar to Shigella sonnei insertion element IS600 hypothetical protein SWALL:YIS2_SHISO (SWALL:P16940) (272 aa) fasta scores: E(): 5.9e-25%2C 37.4 38d in 270 aa%2CPseudomonas aeruginosa hypothetical protein Pa0257 SWALL:Q9I6N2 (EMBL:AE004463) (263 aa) fasta scores: E(): 8.6e-70%2C 66.16 38d in 263 aa and to Porphyromonas gingivalis transposase Orf2 SWALL:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 9.8e-27%2C 37.26 38d in 271 aa	gene	gene321	http://www.ncbi.nlm.nih.gov/gene/?term=YE0305
YE0306	YE0306		YE0306	361779	362948	+	hydrolase		gene	gene322	http://www.ncbi.nlm.nih.gov/gene/?term=YE0306
YE0307	YE0307	actP	actP	362987	364642	-	acetate permease	member of the sodium:solute symporter family%3B cotranscribed with the acs gene which encodes acetyl coenzyme A synthase%3B mutations affect acetate uptake	gene	gene323	http://www.ncbi.nlm.nih.gov/gene/?term=YE0307
YE0308	YE0308		YE0308	364639	364950	-	hypothetical protein		gene	gene324	http://www.ncbi.nlm.nih.gov/gene/?term=YE0308
YE0309	YE0309	acs	acs	365004	366962	-	acetyl-CoA synthetase	Acs%3B catalyzes the conversion of acetate and CoA to acetyl-CoA	gene	gene325	http://www.ncbi.nlm.nih.gov/gene/?term=YE0309
YE0310	YE0310	gltP	gltP	367882	369195	+	glutamate/aspartate:proton symporter	carrier protein part of the Na(+)-independent%2C binding-protein-independent glutamate-aspartate transport system	gene	gene326	http://www.ncbi.nlm.nih.gov/gene/?term=YE0310
YE0311	YE0311		YE0311	369338	369970	-	two-component response regulator		gene	gene327	http://www.ncbi.nlm.nih.gov/gene/?term=YE0311
YE0312	YE0312		YE0312	370458	371078	+	AraC family transcriptional regulator		gene	gene328	http://www.ncbi.nlm.nih.gov/gene/?term=YE0312
YE0313	YE0313		YE0313	371278	372123	+			gene	gene329	http://www.ncbi.nlm.nih.gov/gene/?term=YE0313
YE0314	YE0314		YE0314	372183	372404	+	hypothetical protein		gene	gene330	http://www.ncbi.nlm.nih.gov/gene/?term=YE0314
YE0315	YE0315		YE0315	372693	373490	-	hypothetical protein	Similar to many TonB membrane transport proteins: Pseudomonas putida TonB protein SWALL:TONB_PSEPU (SWALL:Q05613) (243 aa) fasta scores: E(): 2.3e-17%2C 36.88 id in 244 aa%2C Pseudomonas putida TonB SWALL:Q93PQ7 (EMBL:AF315582) (243 aa) fasta scores: E(): 4.6e-18%2C36.88 38d in 244 aa%2C and to Salmonella typhimurium TonB or Stm1737 SWALL:TONB_SALTY (SWALL:P25945) (242 aa) fasta scores: E(): 0.00013%2C 28.94 38d in 228 aa	gene	gene331	http://www.ncbi.nlm.nih.gov/gene/?term=YE0315
YE0316	YE0316		YE0316	373868	374410	+	DNA-binding protein	Similar to many proposed RNA polymerase sigma factors including: Escherichia coli probable FecI or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 1e-11%2C 31.84 38d in 179 aa%2C Pseudomonas aeruginosa putative Pa1300 SWALL:Q9I444 (EMBL:AE004559) (175 aa) fasta scores: E(): 2.5e-29%2C 51.72 38d in 174 aa and Shigella flexneri 2a FecI SWALL:AAL08458 (EMBL:AF326777) (173 aa) fasta scores: E(): 1e-11%2C 31.84 38d in 179 aa. Also similar to several Iron uptake regulators including:Bordetella pertussis heme uptake regulator HurI SWALL:AAM34715 (EMBL:AF508979) (169 aa) fasta scores: E(): 3.8e-11%2C 32.51 38d in 163 aa	gene	gene332	http://www.ncbi.nlm.nih.gov/gene/?term=YE0316
YE0317	YE0317		YE0317	374403	375368	+	two-component system sensor protein	Similar to many two-component system sensor proteins including: Escherichia coli protein FecR controlling iron dicitrate transport SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 3.5e-10%2C 24.24 id in 297 aa%2C and to Pseudomonas aeruginosa probable transmembrane sensor Pa1301 SWALL:Q9I443 (EMBL:AE004559) (327 aa) fasta scores: E(): 3.1e-37%2C 39.74 38d in 312 aa%2Cand to Agrobacterium tumefaciens transmembrane sensor Atu5310 or agr_pat_bx251 SWALL:Q8UK14 (EMBL:AE008953) (311 aa) fasta scores: E(): 5.5e-17%2C 27.5 38d in 309 aa	gene	gene333	http://www.ncbi.nlm.nih.gov/gene/?term=YE0317
YE0318	YE0318		YE0318	375471	378245	+	exported iron receptor protein	Similar to many including: Pseudomonas putida ferric-pseudobactin 358 receptor precursor PupA SWALL:PUPA_PSEPU (SWALL:P25184) (819 aa) fasta scores: E(): 2.8e-05%2C 22.09 38d in 543 aa%2C Haemophilus influenzae hypothetical protein Hi1369 SWALL:YDDB_HAEIN (SWALL:P45182) (839 aa) fasta scores: E(): 2e-41%2C 28.09 id in 833 aa and Escherichia coli hypothetical protein YddB or b1495 SWALL:YDDB_ECOLI (SWALL:P31827) (790 aa) fasta scores: E(): 3.5e-25%2C 29.04 38d in 785 aa.	gene	gene334	http://www.ncbi.nlm.nih.gov/gene/?term=YE0318
YE0319	YE0319		YE0319	378373	380079	+	membrane transport ATP-binding protein	Similar to Haemophilus influenzae high-affinity zinc uptake system ATP-binding protein ZnuC or hi0408 SWALL:ZNUC_HAEIN (SWALL:P44692) (268 aa) fasta scores: E(): 5.3e-08%2C 35.59 38d in 177 aa%2C and to Escherichia coli O157:H7 putative ATP-binding component of a transport system YddA or z2212 or ecs2101 SWALL:Q8XAW0 (EMBL:AE005355) (561 aa) fasta scores: E(): 3.4e-53%2C35.29 38d in 544 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 high-affinity zinc uptake system ATP-binding protein znuc znuc or b1858 or z2910 or ecs2568 SWALL:ZNUC_ECOLI (SWALL:P52648) (251 aa) fasta scores: E(): 1.8e-06%2C 34.48 38d in 174 aa	gene	gene335	http://www.ncbi.nlm.nih.gov/gene/?term=YE0319
YE0320	YE0320		YE0320	380064	382850	+	zinc protease	Similar to many proposed Zinc proteases including: Escherichia coli probable zinc protease PqqL or b1494 SWALL:PQQL_ECOLI (SWALL:P31828) (931 aa) fasta scores: E(): 6.4e-50%2C 26.11 38d in 938 aa and Haemophilus influenzae probable zinc protease PqqL or hi1368 SWALL:PQQL_HAEIN (SWALL:P45181) (926 aa) fasta scores: E(): 3.6e-52%2C 24.01 38d in 937 aa	gene	gene336	http://www.ncbi.nlm.nih.gov/gene/?term=YE0320
YE0321	YE0321		YE0321	382982	383233	+	antitoxin YefM	Antitoxin that counteracts the effect of the YoeB toxin	gene	gene337	http://www.ncbi.nlm.nih.gov/gene/?term=YE0321
YE0322	YE0322		YE0322	383508	386036	-	inner-membrane transport protein	Similar to several proposed proteins of unknown function and efflux proteins including: Escherichia coli potassium efflux system KefA or b0465 SWALL:KEFA_ECOLI (SWALL:P77338) (1120 aa) fasta scores: E(): 3.1e-19%2C24.28 38d in 803 aa and to Pseudomonas aeruginosa hypothetical protein Pa1408 pa1408 SWALL:Q9I3T6 (EMBL:AE004570) (807 aa) fasta scores: E(): 4.7e-100%2C41.48 38d in 793 aa	gene	gene338	http://www.ncbi.nlm.nih.gov/gene/?term=YE0322
YE0323	YE0323	foxA	foxA	386263	388395	+	ferrioxamine receptor	Previously sequenced as Yersinia enterocolitica ferrioxamine receptor precursor FoxA SWALL:FOXA_YEREN (SWALL:Q01674) (710 aa) fasta scores: E(): 0%2C 99.29 38d in 710 aa. Also highly similar to Salmonella typhimurium ferrioxamine B receptor precursor FoxA or stm0364 SWALL:FOXA_SALTY (SWALL:Q56145) (702 aa) fasta scores: E(): 4.3e-96%2C 41.33 38d in 704 aa and to Erwinia chrysanthemi ferrichrysobactin receptor precursor Fct SWALL:FCT_ERWCH (SWALL:Q47162) (735 aa) fasta scores: E(): 5.3e-70%2C 37.08 38d in 728 aa	gene	gene339	http://www.ncbi.nlm.nih.gov/gene/?term=YE0323
YE0324	YE0324		YE0324	388865	390373	+	ATP/GTP-binding protein	Similar to many including: Pseudomonas aeruginosa probable transcriptional regulator Pa2032 SWALL:Q9I283 (EMBL:AE004629) (474 aa) fasta scores: E(): 1.2e-119%2C64.25 38d in 470 aa%2C Escherichia coli O157:H7 putative regulator YjiR or z5941 or ecs5302 SWALL:Q8XB83 (EMBL:AE005665) (470 aa) fasta scores: E(): 2.9e-104%2C56.47 38d in 471 aa%2C and Escherichia coli hypothetical protein YdcR or b1439 SWALL:YDCR_ECOLI (SWALL:P77730) (468 aa) fasta scores: E(): 2.9e-47%2C 33.68 38d in 472 aa	gene	gene340	http://www.ncbi.nlm.nih.gov/gene/?term=YE0324
YE0327	YE0327	hmuV	hmuV	390519	391319	-	hemin importer ATP-binding subunit	with HmuTU is involved in the transport of hemin	gene	gene341	http://www.ncbi.nlm.nih.gov/gene/?term=YE0327
YE0328	YE0328	hemU	hemU	391312	392316	-	hemin transport system permease HmuU		gene	gene342	http://www.ncbi.nlm.nih.gov/gene/?term=YE0328
YE0329	YE0329	hemT	hemT	392313	393152	-	hemin-binding periplasmic protein		gene	gene343	http://www.ncbi.nlm.nih.gov/gene/?term=YE0329
YE0330	YE0330	hemS	hemS	393149	394186	-	hemin transport protein		gene	gene344	http://www.ncbi.nlm.nih.gov/gene/?term=YE0330
YE0331	YE0331	hemR	hemR	394303	396366	-	hemin receptor		gene	gene345	http://www.ncbi.nlm.nih.gov/gene/?term=YE0331
YE0332	YE0332	hemP	hemP	396539	396784	-	hemin uptake protein	Previously sequenced as: Yersinia enterocolitica hemin uptake protein HemP SWALL:HEMP_YEREN (SWALL:P31516) (81 aa) fasta scores: E(): 1.3e-31%2C 100 38d in 81 aa. Also similar to Salmonella typhimurium%2C and Salmonella typhi putative cytoplasmic protein YdiE or stm1346 or sty1764 SWALL:Q8XGW6 (EMBL:AE008758) (63 aa) fasta scores: E(): 0.019%2C 41.27 38d in 63 aa	gene	gene346	http://www.ncbi.nlm.nih.gov/gene/?term=YE0332
YE0333	YE0333		YE0333	396816	397466	-	hypothetical protein		gene	gene347	http://www.ncbi.nlm.nih.gov/gene/?term=YE0333
YE0334	YE0334		YE0334	397463	398008	-	hypothetical protein		gene	gene348	http://www.ncbi.nlm.nih.gov/gene/?term=YE0334
YE0335	YE0335	hemN	hemN	398005	399318	-	coproporphyrinogen III oxidase	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III	gene	gene349	http://www.ncbi.nlm.nih.gov/gene/?term=YE0335
YE0336	YE0336	tdcB	tdcB	399955	400947	+	threonine dehydratase	catalyzes the formation of 2-oxobutanoate from L-threonine%3B catabolic	gene	gene350	http://www.ncbi.nlm.nih.gov/gene/?term=YE0336
YE0337	YE0337	tdcC	tdcC	400972	402300	+	threonine/serine transporter TdcC	involved in the import of threonine and serine in combination with the import of a proton	gene	gene351	http://www.ncbi.nlm.nih.gov/gene/?term=YE0337
YE0338	YE0338	tdcD	tdcD	402319	403575	+	propionate/acetate kinase	catalyzes the formation of propanoyl phosphate from propanoate and ATP%3B TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism	gene	gene352	http://www.ncbi.nlm.nih.gov/gene/?term=YE0338
YE0339	YE0339	tdcE	tdcE	403626	405920	+	keto-acid formate acetyltransferase	Highly similar to many including: Escherichia coli keto-acid formate acetyltransferase TdcE or b3114 SWALL:TDCE_ECOLI (SWALL:P42632) (746 aa) fasta scores: E(): 0%2C 85.83 38d in 741 aa and to Yersinia pestis formate acetyltransferase 1 PflB or ypo1383 SWALL:Q8ZGC0 (EMBL:AJ414148) (760 aa) fasta scores: E(): 0%2C 75.92 38d in 756 aa	gene	gene353	http://www.ncbi.nlm.nih.gov/gene/?term=YE0339
YE0340	YE0340		YE0340	406326	406637	-	hypothetical protein		gene	gene354	http://www.ncbi.nlm.nih.gov/gene/?term=YE0340
YE0341	YE0341		YE0341	406648	407421	-	dehydrogenase/reductase	Similar to many putative oxidoreductases: Rhizobium loti glucose dehydrogenase Mlr5280 SWALL:Q98C63 (EMBL:AP003006) (250 aa) fasta scores: E(): 1.2e-39%2C44.98 38d in 249 aa and Streptomyces coelicolor putative dehydrogenase/reductase Sco2651 or sc8e4a.21C SWALL:Q9L1Y4 (EMBL:AL138662) (245 aa) fasta scores: E(): 3.2e-29%2C38.55 38d in 249 aa	gene	gene355	http://www.ncbi.nlm.nih.gov/gene/?term=YE0341
YE0342	YE0342		YE0342	407491	408471	-	aldo/keto reductase	Similar to Yersinia pestis putative aldo/keto reductase Ypo2806 SWALL:Q8ZCZ6 (EMBL:AJ414153) (329 aa) fasta scores: E(): 1.1e-80%2C 67.47 38d in 329 aa%2C and to Xanthomonas campestris pv. campestris str. ATCC 33913 oxidoreductase Xcc2679 SWALL:AAM41951 (EMBL:AE012380) (327 aa) fasta scores: E(): 1.7e-76%2C 62.69 38d in 327 aa	gene	gene356	http://www.ncbi.nlm.nih.gov/gene/?term=YE0342
YE0343	YE0343		YE0343	408604	409497	+	LysR family transcriptional regulator	Similar to many proposed LysR-family transcriptional regulators including: Yersinia pestis putative LysR-family transcriptional regulatory protein PtxR or Ypo2807 SWALL:Q8ZCZ5 (EMBL:AJ414153) (297 aa) fasta scores: E(): 1.2e-63%2C 54.23 38d in 295 aa%2C and to Ralstonia solanacearum probable transcription regulator protein rsp1471 or rs03073 SWALL:Q8XQ15 (EMBL:AL646085) (297 aa) fasta scores: E(): 5.8e-71%2C 59.18 38d in 294 aa%2Cand to Xanthomonas axonopodis pv. citri str. 306 transcriptional regulator lysr family xac0302 SWALL:AAM35194 (EMBL:AE011655) (317 aa) fasta scores: E(): 4.1e-66%2C 56.27 38d in 295 aa	gene	gene357	http://www.ncbi.nlm.nih.gov/gene/?term=YE0343
YE0344	YE0344		YE0344	410078	411052	+			gene	gene358	http://www.ncbi.nlm.nih.gov/gene/?term=YE0344
YE0345	YE0345		YE0345	411054	411212	+			gene	gene359	http://www.ncbi.nlm.nih.gov/gene/?term=YE0345
YE0346	YE0346		YE0346	411687	412262	-	transcriptional regulator		gene	gene361	http://www.ncbi.nlm.nih.gov/gene/?term=YE0346
YE0347	YE0347	glxK	glxK	412574	413737	+	glycerate kinase		gene	gene362	http://www.ncbi.nlm.nih.gov/gene/?term=YE0347
YE0348	YE0348	dipZ	dipZ	413785	415521	-	thiol:disulfide interchange protein	two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm%3B DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm	gene	gene363	http://www.ncbi.nlm.nih.gov/gene/?term=YE0348
YE0349	YE0349		YE0349	415497	415799	-	divalent-cation tolerance protein CutA	copper binding protein required for copper tolerance%3B involved in resistance toward heavy metals	gene	gene364	http://www.ncbi.nlm.nih.gov/gene/?term=YE0349
YE0350	YE0350	b4138	b4138	416005	417306	-	anaerobic C4-dicarboxylate transporter	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate%3B similar to dcuB	gene	gene365	http://www.ncbi.nlm.nih.gov/gene/?term=YE0350
YE0351	YE0351	aspA	aspA	417426	418862	-	aspartate ammonia-lyase	catalyzes the formation of fumarate from aspartate	gene	gene366	http://www.ncbi.nlm.nih.gov/gene/?term=YE0351
YE0352	YE0352	fxsA	fxsA	419304	419831	+	FxsA protein	F exclusion of bacteriophage T7%3B overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7%3B interacts with the F plasmid-encoded PifA protein%3B inner membrane protein	gene	gene367	http://www.ncbi.nlm.nih.gov/gene/?term=YE0352
YE0353	YE0353	groES	groES	420084	420377	+	co-chaperonin GroES	10 kDa chaperonin%3B Cpn10%3B GroES%3B forms homoheptameric ring%3B binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it%3B folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES%3B release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring	gene	gene368	http://www.ncbi.nlm.nih.gov/gene/?term=YE0353
YE0354	YE0354	groEL	groEL	420434	422086	+	chaperonin GroEL	60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is essential for growth	gene	gene369	http://www.ncbi.nlm.nih.gov/gene/?term=YE0354
YE0355	YE0355		YE0355	422468	422806	+	lipoprotein		gene	gene370	http://www.ncbi.nlm.nih.gov/gene/?term=YE0355
YE0356	YE0356		YE0356	422874	423911	-	hypothetical protein		gene	gene371	http://www.ncbi.nlm.nih.gov/gene/?term=YE0356
YE0357	YE0357	b4147	b4147	423947	424513	+	elongation factor P	Involved in peptide bond synthesis%3B alters the affinity of the ribosome for aminoacyl-tRNA	gene	gene372	http://www.ncbi.nlm.nih.gov/gene/?term=YE0357
YE0358	YE0358	ecnB	ecnB	424699	424830	+	entericidin B	Similar to Citrobacter freundii entericidin B precursor EcnB SWALL:ECNB_CITFR (SWALL:P56550) (48 aa) fasta scores: E(): 1.2e-07%2C 64.1 38d in 39 aa and to Escherichia coli%2C and Escherichia coli O157:H7 entericidin B precursor EcnB or b4147.2 or z5754 or ecs5128.2 SWALL:ECNB_ECOLI (SWALL:P56549) (48 aa) fasta scores: E(): 3.3e-07%2C 55.81 38d in 43 aa	gene	gene373	http://www.ncbi.nlm.nih.gov/gene/?term=YE0358
YE0359	YE0359	sugE	sugE	425009	425323	+	quaternary ammonium compound-resistance protein SugE	member of the SMR family of proton-dependent drug efflux transporters%3B quaternary ammonium compound efflux pump%3B confers resistance to cetylpyridinium%2C cetyldimethylethyl ammonium and cetrimide cations	gene	gene374	http://www.ncbi.nlm.nih.gov/gene/?term=YE0359
YE0360	YE0360		YE0360	425325	425864	-	outer membrane lipoprotein Blc	lipocalin%3B globomycin-sensitive outer membrane lipoprotein	gene	gene375	http://www.ncbi.nlm.nih.gov/gene/?term=YE0360
YE0361	YE0361	b4151	b4151	426013	426369	-	fumarate reductase subunit D	in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane	gene	gene376	http://www.ncbi.nlm.nih.gov/gene/?term=YE0361
YE0362	YE0362	b4152	b4152	426386	426778	-	fumarate reductase subunit C	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB	gene	gene377	http://www.ncbi.nlm.nih.gov/gene/?term=YE0362
YE0363	YE0363	b4153	b4153	426795	427529	-	fumarate reductase iron-sulfur subunit	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB	gene	gene378	http://www.ncbi.nlm.nih.gov/gene/?term=YE0363
YE0364	YE0364	b4154	b4154	427522	429345	-	fumarate reductase flavoprotein subunit	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB	gene	gene379	http://www.ncbi.nlm.nih.gov/gene/?term=YE0364
YE0365	YE0365	b4155	b4155	429789	430766	+	lysyl-tRNA synthetase	lysine--tRNA ligase beta chain%3B poxA%3B class II aminoacyl tRNA synthetase%3B catalyzes a two-step reaction%3B first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA	gene	gene380	http://www.ncbi.nlm.nih.gov/gene/?term=YE0365
YE0366	YE0366		YE0366	430861	434091	-	hypothetical protein		gene	gene381	http://www.ncbi.nlm.nih.gov/gene/?term=YE0366
YE0367	YE0367	psd	psd	434261	435142	-	phosphatidylserine decarboxylase	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine	gene	gene382	http://www.ncbi.nlm.nih.gov/gene/?term=YE0367
YE0368	YE0368		YE0368	435251	436303	-	ribosome-associated GTPase	EngC%3B RsgA%3B CpgA%3B circularly permuted GTPase%3B ribosome small subunit-dependent GTPase A%3B has the pattern G4-G1-G3 as opposed to other GTPases%3B interacts strongly with 30S ribosome which stimulates GTPase activity	gene	gene383	http://www.ncbi.nlm.nih.gov/gene/?term=YE0368
YE0369	YE0369	b4162	b4162	436481	437026	+	oligoribonuclease	3'-5' exoribonuclease specific for small oligoribonuclotides	gene	gene384	http://www.ncbi.nlm.nih.gov/gene/?term=YE0369
YE0371	YE0371		YE0371	438071	439225	-	iron-sulfur cluster-binding protein		gene	gene388	http://www.ncbi.nlm.nih.gov/gene/?term=YE0371
YE0372	YE0372		YE0372	439224	440738	+	hypothetical protein		gene	gene389	http://www.ncbi.nlm.nih.gov/gene/?term=YE0372
YE0373	YE0373		YE0373	440749	441219	+	ATPase	possibly involved in cell wall synthesis	gene	gene390	http://www.ncbi.nlm.nih.gov/gene/?term=YE0373
YE0374	YE0374		YE0374	441320	443182	+	N-acetylmuramoyl-L-alanine amidase-family protein		gene	gene391	http://www.ncbi.nlm.nih.gov/gene/?term=YE0374
YE0375	YE0375	mutL	mutL	443198	445105	+	DNA mismatch repair protein	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	gene	gene392	http://www.ncbi.nlm.nih.gov/gene/?term=YE0375
YE0376	YE0376	miaA	miaA	445098	446039	+	tRNA delta(2)-isopentenylpyrophosphate transferase	IPP transferase%3B isopentenyltransferase%3B involved in tRNA modification%3B in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil%3B further tRNA modifications may occur%3B mutations in miaA result in defects in translation efficiency and fidelity	gene	gene393	http://www.ncbi.nlm.nih.gov/gene/?term=YE0376
YE0377	YE0377	hfq	hfq	446155	446460	+	RNA-binding protein Hfq	Stimulates the elongation of poly(A) tails	gene	gene394	http://www.ncbi.nlm.nih.gov/gene/?term=YE0377
YE0378	YE0378	hflX	hflX	446559	447860	+	GTPase HflX	involved in modulation of proteins HflK and HflC%3B part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein	gene	gene395	http://www.ncbi.nlm.nih.gov/gene/?term=YE0378
YE0379	YE0379	hflK	hflK	447958	449241	+	hypothetical protein		gene	gene396	http://www.ncbi.nlm.nih.gov/gene/?term=YE0379
YE0380	YE0380	hflC	hflC	449245	450249	+	FtsH protease regulator HflC	with HflK inhibits proteolysis of lambda cII protein by FtsH	gene	gene397	http://www.ncbi.nlm.nih.gov/gene/?term=YE0380
YE0381	YE0381		YE0381	450388	450588	+	hypothetical protein		gene	gene398	http://www.ncbi.nlm.nih.gov/gene/?term=YE0381
YE0382	YE0382	adeK	adeK	450688	451986	+	adenylosuccinate synthetase	catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis	gene	gene399	http://www.ncbi.nlm.nih.gov/gene/?term=YE0382
YE0383	YE0383		YE0383	452266	452691	+	transcriptional repressor NsrR	negatively regulates the transcription of genes upregulated by nitrosative stress	gene	gene400	http://www.ncbi.nlm.nih.gov/gene/?term=YE0383
YE0384	YE0384	rnr	rnr	452871	455417	+	exoribonuclease R	3'-5'exoribonuclease that acts nonspecifically on poly(A)%2C poly(U) and ribosomal RNAs	gene	gene401	http://www.ncbi.nlm.nih.gov/gene/?term=YE0384
YE0385	YE0385		YE0385	455489	456229	+	23S rRNA (guanosine-2'-O-)-methyltransferase	Specifically methylates the ribose of guanosine 2251 in 23S rRNA	gene	gene402	http://www.ncbi.nlm.nih.gov/gene/?term=YE0385
YE0386	YE0386	aidB	aidB	456561	458204	+	isovaleryl CoA dehydrogenase	catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA	gene	gene403	http://www.ncbi.nlm.nih.gov/gene/?term=YE0386
YE0387	YE0387		YE0387	458229	458537	-	biofilm stress and motility protein A	in Escherichia coli%2C mutation of this gene affects biofilm maturation%2C stress response%2C and motility	gene	gene404	http://www.ncbi.nlm.nih.gov/gene/?term=YE0387
YE0388	YE0388		YE0388	458723	459472	+	esterase	YjfP%3B esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro%3B unknown function and substrate in vivo	gene	gene405	http://www.ncbi.nlm.nih.gov/gene/?term=YE0388
YE0389	YE0389		YE0389	459557	459844	-	hypothetical protein	Similar to many exported proteins including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YjfY precursor b4199 or z5808 or ecs5175 SWALL:YJFY_ECOLI (SWALL:P39307) (91 aa) fasta scores: E(): 1.4e-06%2C 40 38d in 80 aa and to Salmonella typhimurium putative outer membrane protein YhcN or Stm3361 SWALL:Q8ZLP6 (EMBL:AE008855) (87 aa) fasta scores: E(): 2.8e-05%2C 43.95 38d in 91 aa	gene	gene406	http://www.ncbi.nlm.nih.gov/gene/?term=YE0389
YE0392	YE0392	rpsF	rpsF	460435	460827	+	30S ribosomal protein S6	binds cooperatively with S18 to the S15-16S complex%2C allowing platform assembly to continue with S11 and S21	gene	gene407	http://www.ncbi.nlm.nih.gov/gene/?term=YE0392
YE0393	YE0393	priB	priB	460832	461152	+	primosomal replication protein N	binds single-stranded DNA at the primosome assembly site	gene	gene408	http://www.ncbi.nlm.nih.gov/gene/?term=YE0393
YE0394	YE0394	rpsR	rpsR	461157	461384	+	30S ribosomal protein S18	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA%3B helps stabilize the platform of the 30S subunit	gene	gene409	http://www.ncbi.nlm.nih.gov/gene/?term=YE0394
YE0395	YE0395	rplI	rplI	461424	461876	+	50S ribosomal protein L9	in Escherichia coli this protein is wrapped around the base of the L1 stalk	gene	gene410	http://www.ncbi.nlm.nih.gov/gene/?term=YE0395
YE0396	YE0396		YE0396	461952	462401	-	hypothetical protein		gene	gene411	http://www.ncbi.nlm.nih.gov/gene/?term=YE0396
YE0397	YE0397		YE0397	462544	463317	-	hypothetical protein	Similar to Yersinia pestis hypothetical protein Ypo3533 SWALL:Q8ZB86 (EMBL:AJ414157) (246 aa) fasta scores: E(): 2.3e-46%2C 71.76 38d in 255 aa and Escherichia coli hypothetical protein YtfB or b4206 SWALL:YTFB_ECOLI (SWALL:P39310) (212 aa) fasta scores: E(): 7.9e-15%2C 47.39 id in 211 aa	gene	gene412	http://www.ncbi.nlm.nih.gov/gene/?term=YE0397
YE0398	YE0398	fklB	fklB	463604	464224	+	peptidyl-prolyl cis-trans isomerase	FKBP-type%3B rotamase%3B catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides	gene	gene413	http://www.ncbi.nlm.nih.gov/gene/?term=YE0398
YE0399	YE0399	cpdB	cpdB	464296	466269	-	bifunctional 2'%2C3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase	periplasmic enzyme%3B functions during ribonucleic acid degradation%3B 2'%2C3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate	gene	gene414	http://www.ncbi.nlm.nih.gov/gene/?term=YE0399
YE0400	YE0400	amtA	amtA	466745	467488	+	adenosine-3'(2')%2C5'-bisphosphate nucleotidase	catalyzes the formation of AMP from adenosine-3'%2C5'-bisphosphate	gene	gene415	http://www.ncbi.nlm.nih.gov/gene/?term=YE0400
YE0401	YE0401		YE0401	467491	468054	-	hypothetical protein		gene	gene416	http://www.ncbi.nlm.nih.gov/gene/?term=YE0401
YE0402	YE0402		YE0402	468378	468581	+	hypothetical protein		gene	gene417	http://www.ncbi.nlm.nih.gov/gene/?term=YE0402
YE0403	YE0403		YE0403	468666	469997	-	hypothetical protein		gene	gene418	http://www.ncbi.nlm.nih.gov/gene/?term=YE0403
YE0404	YE0404	msrA	msrA	470285	470923	-	methionine sulfoxide reductase A	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form%3B provides protection against oxidative stress	gene	gene419	http://www.ncbi.nlm.nih.gov/gene/?term=YE0404
YE0405	YE0405		YE0405	471364	473064	+	hypothetical protein		gene	gene420	http://www.ncbi.nlm.nih.gov/gene/?term=YE0405
YE0406	YE0406		YE0406	473166	476945	+	hypothetical protein		gene	gene421	http://www.ncbi.nlm.nih.gov/gene/?term=YE0406
YE0407	YE0407		YE0407	476948	477310	+	hypothetical protein		gene	gene422	http://www.ncbi.nlm.nih.gov/gene/?term=YE0407
YE0408	YE0408	ppa	ppa	477569	478096	-	inorganic pyrophosphatase	catalyzes the hydrolysis of pyrophosphate to phosphate	gene	gene423	http://www.ncbi.nlm.nih.gov/gene/?term=YE0408
YE0409	YE0409		YE0409	478386	479966	+	methyl-accepting chemotaxis protein	Similar to many including: Escherichia coli methyl-accepting chemotaxis protein I Tsr or ched or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 2e-58%2C 42.61 38d in 528 aa and to Salmonella typhimurium methyl-accepting chemotaxis protein I%2C serine sensor receptor Tsr or stm4533 SWALL:Q8ZJY4 (EMBL:AE008913) (553 aa) fasta scores: E(): 1.1e-59%2C42.39 38d in 526 aa	gene	gene424	http://www.ncbi.nlm.nih.gov/gene/?term=YE0409
YE0410	YE0410	fbp	fbp	480178	481191	-	fructose-1%2C6-bisphosphatase	catalyzes the formation of D-fructose 6-phosphate from fructose-1%2C6-bisphosphate	gene	gene425	http://www.ncbi.nlm.nih.gov/gene/?term=YE0410
YE0411	YE0411	mpl	mpl	481361	482746	+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase		gene	gene426	http://www.ncbi.nlm.nih.gov/gene/?term=YE0411
YE0412	YE0412		YE0412	483000	483263	-	hypothetical protein		gene	gene427	http://www.ncbi.nlm.nih.gov/gene/?term=YE0412
YE0413	YE0413	argR	argR	483677	484147	-	arginine repressor	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes	gene	gene428	http://www.ncbi.nlm.nih.gov/gene/?term=YE0413
YE0414	YE0414	mdh	mdh	484611	485546	+	malate dehydrogenase	oxidizes malate to oxaloacetate	gene	gene429	http://www.ncbi.nlm.nih.gov/gene/?term=YE0414
YE0414a	YE0414a		YE0414a	485623	485898	-	hypothetical protein		gene	gene430	http://www.ncbi.nlm.nih.gov/gene/?term=YE0414a
YE0416	YE0416		YE0416	486028	486429	+			gene	gene431	http://www.ncbi.nlm.nih.gov/gene/?term=YE0416
YE0417	YE0417	cel	cel	486490	487461	-	octaprenyl diphosphate synthase		gene	gene432	http://www.ncbi.nlm.nih.gov/gene/?term=YE0417
YE0418	YE0418	rplU	rplU	487721	488032	+	50S ribosomal protein L21		gene	gene433	http://www.ncbi.nlm.nih.gov/gene/?term=YE0418
YE0419	YE0419	rpmA	rpmA	488052	488309	+	50S ribosomal protein L27	involved in the peptidyltransferase reaction during translation	gene	gene434	http://www.ncbi.nlm.nih.gov/gene/?term=YE0419
YE0420	YE0420		YE0420	488397	489356	+	hypothetical protein		gene	gene435	http://www.ncbi.nlm.nih.gov/gene/?term=YE0420
YE0421	YE0421	obgE	obgE	489388	490560	+	GTPase ObgE	essential GTPase%3B exhibits high exchange rate for GTP/GDP%3B associates with 50S ribosomal subunit%3B involved in regulation of chromosomal replication	gene	gene436	http://www.ncbi.nlm.nih.gov/gene/?term=YE0421
YE0422	YE0422	basS	basS	490664	491725	-	sensor protein BasS/PmrB		gene	gene437	http://www.ncbi.nlm.nih.gov/gene/?term=YE0422
YE0423	YE0423	basR	basR	491725	492384	-	DNA-binding transcriptional regulator BasR	response regulator in two-component regulatory system with BasS	gene	gene438	http://www.ncbi.nlm.nih.gov/gene/?term=YE0423
YE0424	YE0424	dacB	dacB	492390	493838	-	D-alanyl-D-alanine carboxypeptidase	penicillin binding protein 4%3B penicillin sensitive%3B catalyzes the formation of D-alanine from D-alanyl-D-alanine%3B one of four%2C DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains	gene	gene439	http://www.ncbi.nlm.nih.gov/gene/?term=YE0424
YE0425	YE0425	greA	greA	494097	494573	+	transcription elongation factor GreA	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus	gene	gene440	http://www.ncbi.nlm.nih.gov/gene/?term=YE0425
YE0426	YE0426		YE0426	494702	494995	-	hypothetical protein		gene	gene441	http://www.ncbi.nlm.nih.gov/gene/?term=YE0426
YE0427	YE0427	rrmJ	rrmJ	495142	495771	+	23S rRNA methyltransferase J	Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit	gene	gene442	http://www.ncbi.nlm.nih.gov/gene/?term=YE0427
YE0428	YE0428	hflB	hflB	495828	497762	+	ATP-dependent metalloprotease	inner membrane metalloprotease%3B may be involved in degradation of aberrant cytoplasmic and membrane proteins	gene	gene443	http://www.ncbi.nlm.nih.gov/gene/?term=YE0428
YE0429	YE0429	folP	folP	497847	498680	+	dihydropteroate synthase	catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7%2C8-dihydropteridine diphosphate and 4-aminobenzoate	gene	gene444	http://www.ncbi.nlm.nih.gov/gene/?term=YE0429
YE0430	YE0430	glmM	glmM	498690	500030	+	phosphoglucosamine mutase	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate	gene	gene445	http://www.ncbi.nlm.nih.gov/gene/?term=YE0430
YE0431	YE0431	secG	secG	500254	500589	+	preprotein translocase subunit SecG		gene	gene446	http://www.ncbi.nlm.nih.gov/gene/?term=YE0431
YE0432	YE0432		YE0432	501120	501572	+	hypothetical protein	in Streptococcus pneumoniae this gene was found to be essential%3B structure determination of the Streptococcus protein shows that it is similar to a number of other proteins	gene	gene449	http://www.ncbi.nlm.nih.gov/gene/?term=YE0432
YE0433	YE0433	nusA	nusA	501594	503081	+	transcription elongation factor NusA	modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination	gene	gene450	http://www.ncbi.nlm.nih.gov/gene/?term=YE0433
YE0434	YE0434	infB	infB	503106	505784	+	translation initiation factor IF-2	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex	gene	gene451	http://www.ncbi.nlm.nih.gov/gene/?term=YE0434
YE0435	YE0435	rbfA	rbfA	505851	506261	+	ribosome-binding factor A	associates with free 30S ribosomal subunits%3B essential for efficient processing of 16S rRNA%3B in Escherichia coli rbfA is induced by cold shock	gene	gene452	http://www.ncbi.nlm.nih.gov/gene/?term=YE0435
YE0436	YE0436	truB	truB	506261	507250	+	tRNA pseudouridine synthase B	catalyzes isomerization of specific uridines in RNA to pseudouridine%3B responsible for residues in T loops of many tRNAs	gene	gene453	http://www.ncbi.nlm.nih.gov/gene/?term=YE0436
YE0437	YE0437	rpsO	rpsO	507372	507641	+	30S ribosomal protein S15	primary rRNA binding protein%3B helps nucleate assembly of 30S%3B binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA%3B autoregulates translation through interactions with the mRNA leader sequence	gene	gene455	http://www.ncbi.nlm.nih.gov/gene/?term=YE0437
YE0438	YE0438	pnp	pnp	507904	510024	+	polynucleotide phosphorylase/polyadenylase		gene	gene457	http://www.ncbi.nlm.nih.gov/gene/?term=YE0438
YE0439	YE0439	nlpI	nlpI	510147	511031	+	lipoprotein NlpI	lipoprotein that appears to be involved in cell division%3B interacts with the periplasmic protease Prc and may be activated by protease processing	gene	gene458	http://www.ncbi.nlm.nih.gov/gene/?term=YE0439
YE0440	YE0440	csdA	csdA	511217	513190	+	ATP-dependent RNA helicase DeaD	participates in the assembly of the large subunit of the ribosome%3B plays a key role in optimal cell growth at low temperature and is required for normal cell division	gene	gene459	http://www.ncbi.nlm.nih.gov/gene/?term=YE0440
YE0441	YE0441		YE0441	513550	513822	+	lipoprotein	no significant database hits	gene	gene460	http://www.ncbi.nlm.nih.gov/gene/?term=YE0441
YE0442	YE0442		YE0442	514238	515260	-	hypothetical protein		gene	gene461	http://www.ncbi.nlm.nih.gov/gene/?term=YE0442
YE0443	YE0443		YE0443	515727	516887	+	multidrug efflux protein		gene	gene462	http://www.ncbi.nlm.nih.gov/gene/?term=YE0443
YE0444	YE0444		YE0444	516891	520016	+	multidrug efflux protein		gene	gene463	http://www.ncbi.nlm.nih.gov/gene/?term=YE0444
YE0445	YE0445	ibeB	ibeB	520018	521424	+	outer membrane efflux lipoprotein		gene	gene464	http://www.ncbi.nlm.nih.gov/gene/?term=YE0445
YE0447	YE0447		YE0447	522019	523344	+	transmembrane transport protein		gene	gene465	http://www.ncbi.nlm.nih.gov/gene/?term=YE0447
YE0448	YE0448		YE0448	523394	524710	+	hypothetical protein	Similar to many proteins of undefined function including: Salmonella typhi hypothetical protein Sty3418 SWALL:Q8Z3K8 (EMBL:AL627278) (436 aa) fasta scores: E(): 1.7e-102%2C 64.98 38d in 437 aa%2C Escherichia coli hypothetical protein YhaM or b3108/b3109 SWALL:YHAM_ECOLI (SWALL:P42626) (437 aa) fasta scores: E(): 1.6e-101%2C65.36 38d in 436 aa and Streptococcus pneumoniae L-serine dehydratase%2C iron-sulfur-dependent%2C alpha subunit sp0105 SWALL:Q97T50 (EMBL:AE007327) (290 aa) fasta scores: E(): 1.1%2C 26.87 38d in 227 aa	gene	gene466	http://www.ncbi.nlm.nih.gov/gene/?term=YE0448
YE0449	YE0449		YE0449	524772	525650	-	hypothetical protein		gene	gene467	http://www.ncbi.nlm.nih.gov/gene/?term=YE0449
YE0450	YE0450		YE0450	525662	526657	-	protease		gene	gene468	http://www.ncbi.nlm.nih.gov/gene/?term=YE0450
YE0451	YE0451		YE0451	526864	527385	+	lipid carrier protein		gene	gene469	http://www.ncbi.nlm.nih.gov/gene/?term=YE0451
YE0452	YE0452		YE0452	527379	527882	+	acetyltransferase		gene	gene470	http://www.ncbi.nlm.nih.gov/gene/?term=YE0452
YE0453	YE0453		YE0453	527869	528162	-	GIY-YIG nuclease superfamily protein		gene	gene471	http://www.ncbi.nlm.nih.gov/gene/?term=YE0453
YE0454	YE0454	potE	potE	528299	529615	-	putrescine transporter	catalyzes the uptake of putrescine via a proton symport mechanism%2C as well as the efflux of putrescine by a putrescine/ornithine antiport system	gene	gene472	http://www.ncbi.nlm.nih.gov/gene/?term=YE0454
YE0455	YE0455	speF	speF	529709	531874	-	ornithine decarboxylase	Similar to Escherichia coli ornithine decarboxylase%2C inducible SpeF or b0693 SWALL:DCOS_ECOLI (SWALL:P24169) (732 aa) fasta scores: E(): 0%2C 71.42 38d in 721 aa and to Yersinia pestis ornithine decarboxylase SpeC or Ypo0960 SWALL:Q8ZHE0 (EMBL:AJ414145) (720 aa) fasta scores: E(): 0%2C 76.32 38d in 718 aa	gene	gene473	http://www.ncbi.nlm.nih.gov/gene/?term=YE0455
YE0458	YE0458		YE0458	533021	535045	-	hypothetical protein		gene	gene474	http://www.ncbi.nlm.nih.gov/gene/?term=YE0458
YE0459	YE0459		YE0459	535068	536306	-	hypothetical protein		gene	gene475	http://www.ncbi.nlm.nih.gov/gene/?term=YE0459
YE0460	YE0460		YE0460	536867	538180	+	sugar binding protein		gene	gene476	http://www.ncbi.nlm.nih.gov/gene/?term=YE0460
YE0461	YE0461		YE0461	538188	539072	+	sugar transport system permease		gene	gene477	http://www.ncbi.nlm.nih.gov/gene/?term=YE0461
YE0462	YE0462		YE0462	539091	539930	+	sugar transport system permease		gene	gene478	http://www.ncbi.nlm.nih.gov/gene/?term=YE0462
YE0463	YE0463		YE0463	539942	541057	+	sugar ABC transporter ATP-binding protein		gene	gene479	http://www.ncbi.nlm.nih.gov/gene/?term=YE0463
YE0464	YE0464		YE0464	541072	542238	+	hypothetical protein		gene	gene480	http://www.ncbi.nlm.nih.gov/gene/?term=YE0464
YE0465	YE0465		YE0465	542336	542779	+	hypothetical protein		gene	gene481	http://www.ncbi.nlm.nih.gov/gene/?term=YE0465
YE0467	YE0467		YE0467	543286	544275	+	hypothetical protein	Weakly similar to Lactococcus lactis GntR family transcriptional regulator BusR or ll1453 SWALL:Q9CFL6 (EMBL:AE006375) (206 aa) fasta scores: E(): 8.5%2C 25 38d in 184 aa	gene	gene482	http://www.ncbi.nlm.nih.gov/gene/?term=YE0467
YE0468	YE0468		YE0468	544967	545596	+	hypothetical protein		gene	gene483	http://www.ncbi.nlm.nih.gov/gene/?term=YE0468
YE0469	YE0469	phnP	phnP	545597	546364	-	carbon-phosphorus lyase complex accessory protein	required for the use of phosphonates and phosphite as phosphorus sources	gene	gene484	http://www.ncbi.nlm.nih.gov/gene/?term=YE0469
YE0470	YE0470	phnN	phnN	546355	546933	-	ribose 1%2C5-bisphosphokinase		gene	gene485	http://www.ncbi.nlm.nih.gov/gene/?term=YE0470
YE0471	YE0471	phnM	phnM	546933	548081	-	PhnM protein		gene	gene486	http://www.ncbi.nlm.nih.gov/gene/?term=YE0471
YE0472	YE0472	phnL	phnL	548078	548752	-	phosphonates transport ATP-binding protein		gene	gene487	http://www.ncbi.nlm.nih.gov/gene/?term=YE0472
YE0473	YE0473	phnK	phnK	548826	549614	-	phosphonate C-P lyase system protein PhnK		gene	gene488	http://www.ncbi.nlm.nih.gov/gene/?term=YE0473
YE0474	YE0474	phnJ	phnJ	549629	550495	-	PhnJ protein		gene	gene489	http://www.ncbi.nlm.nih.gov/gene/?term=YE0474
YE0475	YE0475	phnI	phnI	550488	551600	-	PhnI protein		gene	gene490	http://www.ncbi.nlm.nih.gov/gene/?term=YE0475
YE0476	YE0476	phnH	phnH	551600	552181	-	carbon-phosphorus lyase complex subunit	Similar to Escherichia coli PhnH protein involved in phosphonate usage%2C b4100 SWALL:PHNH_ECOLI (SWALL:P16686) (194 aa) fasta scores: E(): 1.4e-38%2C 54.12 id in 194 aa%2C and to Yersinia pestis PhnH protein or ypo3458 SWALL:Q8ZBF8 (EMBL:AJ414157) (208 aa) fasta scores: E(): 1.3e-40%2C 63.46 38d in 208 aa	gene	gene491	http://www.ncbi.nlm.nih.gov/gene/?term=YE0476
YE0477	YE0477	phnG	phnG	552181	552657	-	PhnG protein		gene	gene492	http://www.ncbi.nlm.nih.gov/gene/?term=YE0477
YE0478	YE0478	phnF	phnF	552658	553383	-	phosphonate metabolism transcriptional regulator PhnF	may be involved in phosphonate uptake and biodegradation	gene	gene493	http://www.ncbi.nlm.nih.gov/gene/?term=YE0478
YE0479	YE0479		YE0479	553768	554871	+	lipoprotein	Similar to many proteins which are rich in Glycine: Ralstonia solanacearum putative hemagglutinin-related transmembrane protein Rsp1094 SWALL:Q8XQX4 (EMBL:AL646082) (459 aa) fasta scores: E(): 1.3e-22%2C 35.71 38d in 392 aa and to Ralstonia solanacearum putative lipoprotein Rsp0116 or rs03006 SWALL:Q8XTJ2 (EMBL:AL646076) (427 aa) fasta scores: E(): 2e-21%2C 38.43 38d in 346 aa and to Arabidopsis thaliana putative glycine-rich protein f7k2.60 or at4g22480 SWALL:Q9SUX1 (EMBL:AL033545) (608 aa) fasta scores: E(): 4.8e-07%2C 31.56 38d in 377 aa. Note the high Glycine content of the predicted product of this CDS	gene	gene494	http://www.ncbi.nlm.nih.gov/gene/?term=YE0479
YE0480	YE0480		YE0480	555105	556841	+	hypothetical protein	Similar to Haemophilus influenzae heme/hemopexin utilization protein B precursor HxuB or hi0263 SWALL:HXB1_HAEIN (SWALL:P44601) (565 aa) fasta scores: E(): 9.8e-06%2C 17.76 38d in 563 aa and to Ralstonia solanacearum probable activation/secretion signal peptide protein Rsp1095 or rs02601 SWALL:Q8XQX3 (EMBL:AL646082) (557 aa) fasta scores: E(): 5.6e-24%2C 31.85 38d in 565 aa	gene	gene495	http://www.ncbi.nlm.nih.gov/gene/?term=YE0480
YE0481	YE0481	nrdG	nrdG	556986	557522	-	anaerobic ribonucleoside-triphosphate reductase activating protein		gene	gene496	http://www.ncbi.nlm.nih.gov/gene/?term=YE0481
YE0482	YE0482	nrdD	nrdD	557696	559834	-	anaerobic ribonucleoside triphosphate reductase	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates	gene	gene497	http://www.ncbi.nlm.nih.gov/gene/?term=YE0482
YE0483	YE0483		YE0483	560118	561026	-	LysR family transcriptional regulator	Similar to many proposed transcriptional regulatory proteins including: Pseudomonas aeruginosa probable transcriptional regulator Pa0181 SWALL:Q9I6V1 (EMBL:AE004456) (310 aa) fasta scores: E(): 6.8e-32%2C37.28 38d in 287 aa and Rhizobium meliloti putative LysR-family transcriptional regulator Ra0890 or Sma1632 SWALL:Q92YJ0 (EMBL:AE007275) (317 aa) fasta scores: E(): 6.8e-28%2C 32.3 38d in 291 aa	gene	gene498	http://www.ncbi.nlm.nih.gov/gene/?term=YE0483
YE0484	YE0484		YE0484	561129	561653	+	oxidoreductase	Similar to Bacillus subtilis general stress protein 14 YwrO SWALL:GS14_BACSU (SWALL:P80871) (175 aa) fasta scores: E(): 2.3e-26%2C 46.83 38d in 158 aa%2C Bacillus subtilis putative NAD(P)H oxidoreductase YrkL SWALL:YRKL_BACSU (SWALL:P54439) (174 aa) fasta scores: E(): 5e-23%2C 39.41 38d in 170 aa%2C and to Escherichia coli%2Cand Escherichia coli O157:H7 putative NAD(P)H oxidoreductase YheR or b3351 or z4712 or ecs4202 SWALL:YHER_ECOLI (SWALL:P45534) (184 aa) fasta scores: E(): 1.3e-21%2C 42.33 38d in 163 aa	gene	gene499	http://www.ncbi.nlm.nih.gov/gene/?term=YE0484
YE0485	YE0485		YE0485	561756	562025	+	hypothetical protein	Similar to Erwinia amylovora hypothetical 10.0 kDa protein SWALL:Q9ETK7 (EMBL:AF264950) (89 aa) fasta scores: E(): 1.3e-17%2C 60.67 38d in 89 aa	gene	gene500	http://www.ncbi.nlm.nih.gov/gene/?term=YE0485
YE0486	YE0486		YE0486	562119	562376	+	hypothetical protein	Similar in parts to Erwinia amylovora hypothetical protein SWALL:Q9ETQ1 (EMBL:AF264950) (71 aa) fasta scores: E(): 2.6e-14%2C 56.33 38d in 71 aa and to Yersinia pestis hypothetical protein Y1074 or ypmt1.69 SWALL:Q9ZGZ3 (EMBL:AF074611) (108 aa) fasta scores: E(): 8.8%2C 33.33 38d in 42 aa	gene	gene501	http://www.ncbi.nlm.nih.gov/gene/?term=YE0486
YE0487	YE0487		YE0487	562432	563148	-	ABC transporter ATP-binding protein	Similar to Yersinia pestis putative ABC transporter%2C ATP-binding protein Ypo3453 SWALL:Q8ZBG3 (EMBL:AJ414157) (233 aa) fasta scores: E(): 3.4e-69%2C 89.7 id in 233 aa and Agrobacterium tumefaciens ABC transporter%2C nucleotide binding/ATPase protein dppf or atu4620 or agr_l_526 SWALL:Q8U736 (EMBL:AE009390) (245 aa) fasta scores: E(): 2.7e-36%2C 51.28 38d in 234 aa	gene	gene502	http://www.ncbi.nlm.nih.gov/gene/?term=YE0487
YE0488	YE0488		YE0488	563135	564013	-	ABC transporter ATP-binding protein		gene	gene503	http://www.ncbi.nlm.nih.gov/gene/?term=YE0488
YE0489	YE0489		YE0489	564006	564839	-	permease		gene	gene504	http://www.ncbi.nlm.nih.gov/gene/?term=YE0489
YE0490	YE0490		YE0490	564841	565890	-	permease		gene	gene505	http://www.ncbi.nlm.nih.gov/gene/?term=YE0490
YE0491	YE0491		YE0491	566062	567630	-	ABC transporter substrate-binding protein	Similar to many putative ABC transport proteins including: Agrobacterium tumefaciens ABC transporter%2Csubstrate binding protein DppA or atu2518 or agr_c_4574 SWALL:Q8UCG9 (EMBL:AE009198) (570 aa) fasta scores: E(): 2.7e-66%2C 38.78 38d in 508 aa and Rhizobium meliloti putative dipeptide binding periplasmic protein DppA2 or r02413 or smc01525 SWALL:Q92N26 (EMBL:AL591790) (546 aa) fasta scores: E(): 1.9e-45%2C 41.07 38d in 521 aa	gene	gene506	http://www.ncbi.nlm.nih.gov/gene/?term=YE0491
YE0492	YE0492		YE0492	567965	568423	+	hypothetical protein		gene	gene507	http://www.ncbi.nlm.nih.gov/gene/?term=YE0492
YE0494	YE0494	argI	argI	568754	569761	-	ornithine carbamoyltransferase subunit I	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation%3B E. coli K12 has two genes%2C argF and argI%2C capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell%2C the two gene products form a family of four hybrid trimeric isoenzymes designated%2C FFF%2C FFI%2C FII%2C and III.	gene	gene508	http://www.ncbi.nlm.nih.gov/gene/?term=YE0494
YE0495	YE0495		YE0495	569932	570363	+	hypothetical protein		gene	gene509	http://www.ncbi.nlm.nih.gov/gene/?term=YE0495
YE0497	YE0497		YE0497	570858	571361	-	acetyltransferase		gene	gene510	http://www.ncbi.nlm.nih.gov/gene/?term=YE0497
YE0498	YE0498	valS	valS	571621	574518	-	valyl-tRNA synthetase	valine--tRNA ligase%3B ValRS%3B converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val)%3B class-I aminoacyl-tRNA synthetase type 1 subfamily%3B has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain	gene	gene511	http://www.ncbi.nlm.nih.gov/gene/?term=YE0498
YE0499	YE0499	holC	holC	574532	574981	-	DNA polymerase III subunit chi	binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB	gene	gene512	http://www.ncbi.nlm.nih.gov/gene/?term=YE0499
YE0500	YE0500	carP	carP	575141	576652	-	leucyl aminopeptidase	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides	gene	gene513	http://www.ncbi.nlm.nih.gov/gene/?term=YE0500
YE0501	YE0501		YE0501	576932	578026	+	hypothetical protein		gene	gene514	http://www.ncbi.nlm.nih.gov/gene/?term=YE0501
YE0502	YE0502		YE0502	578026	579096	+	hypothetical protein		gene	gene515	http://www.ncbi.nlm.nih.gov/gene/?term=YE0502
YE0505	YE0505		YE0505	579768	581027	+			gene	gene517	http://www.ncbi.nlm.nih.gov/gene/?term=YE0505
YE0506	YE0506		YE0506	581162	581530	-	hypothetical protein	no significant database hits	gene	gene518	http://www.ncbi.nlm.nih.gov/gene/?term=YE0506
YE0510	YE0510	relB	relB	582668	582922	+	bifunctional antitoxin/transcriptional repressor RelB	Qin prophage%3B bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor	gene	gene519	http://www.ncbi.nlm.nih.gov/gene/?term=YE0510
YE0510A	YE0510A		YE0510A	582912	583202	+	hypothetical protein	Similar to Escherichia coli hypothetical RelE-like protein (b1563) SWALL:RELE_ECOLI (SWALL:P07008) (95 aa) fasta scores: E(): 1e-17%2C 55.78 38d in 95 aa and to Escherichia coli hypothetical RelE-like protein RelX SWALL:RELX_ECOLI (SWALL:Q60228) (95 aa) fasta scores: E(): 1.4e-18%2C 58.33 38d in 96 aa	gene	gene520	http://www.ncbi.nlm.nih.gov/gene/?term=YE0510A
YE0511	YE0511		YE0511	583381	583731	-			gene	gene521	http://www.ncbi.nlm.nih.gov/gene/?term=YE0511
YE0512	YE0512		YE0512	583769	584098	+	hypothetical protein	no significant database hits	gene	gene522	http://www.ncbi.nlm.nih.gov/gene/?term=YE0512
YE0513	YE0513		YE0513	584459	584869	+	acetyltransferase	Similar to many including: Pantoea agglomerans hypothetical 17.3 kDa protein SWALL:Q937I1 (EMBL:X99768) (149 aa) fasta scores: E(): 7.4e-16%2C 42.1 38d in 133 aa%2CSalmonella typhi putative acetyltransferase Sty1991 SWALL:Q8Z655 (EMBL:AL627272) (139 aa) fasta scores: E(): 8.8e-13%2C 40.58 38d in 138 aa and to Streptoverticillium sp. blasticidin S-acetyltransferase BlS SWALL:BLS_STRSJ (SWALL:P19997) (136 aa) fasta scores: E(): 2.4e-09%2C 35.08 id in 114 aa	gene	gene523	http://www.ncbi.nlm.nih.gov/gene/?term=YE0513
YE0514	YE0514		YE0514	584895	585584	+	transcriptional regulator	Similar to many including: Pseudomonas aeruginosa probable transcriptional regulator Pa1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 8.4e-06%2C26.47 38d in 204 aa and Vibrio cholerae transcriptional regulator%2C LuxR family Vca1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 6.8e-05%2C22.42 38d in 223 aa	gene	gene524	http://www.ncbi.nlm.nih.gov/gene/?term=YE0514
YE0515	YE0515		YE0515	585621	586928	+	permease		gene	gene525	http://www.ncbi.nlm.nih.gov/gene/?term=YE0515
YE0518	YE0518		YE0518	587957	589264	+	permease	Similar to Escherichia coli cytosine permease CodB or b0336 SWALL:CODB_ECOLI (SWALL:P25525) (419 aa) fasta scores: E(): 1.8e-23%2C 28.03 38d in 428 aa and Streptomyces coelicolor putative cytosine permease Sco0572 or Sc5g5.04C SWALL:Q93RZ8 (EMBL:AL591823) (466 aa) fasta scores: E(): 6.3e-51%2C 38.15 38d in 422 aa	gene	gene526	http://www.ncbi.nlm.nih.gov/gene/?term=YE0518
YE0519	YE0519		YE0519	589409	590173	+	hypothetical protein	Weakly similar to several e.g. Zymomonas mobilis hypothetical 36.8 kDa protein SWALL:Q9Z668 (EMBL:AF102543) (318 aa) fasta scores: E(): 8.1e-09%2C 28.34 38d in 254 aa	gene	gene527	http://www.ncbi.nlm.nih.gov/gene/?term=YE0519
YE0520	YE0520		YE0520	590196	590498	-	hypothetical protein	Weakly similar to Pseudomonas syringae putative RNA polymerase sigma factor HrpL SWALL:Q9R9F2 (EMBL:AB016369) (184 aa) fasta scores: E(): 4.2%2C 30.23 38d in 86 aa	gene	gene528	http://www.ncbi.nlm.nih.gov/gene/?term=YE0520
YE0521	YE0521		YE0521	590732	591214	-	hypothetical protein	Similar to several including: Yersinia pestis putative exported protein Ypo0406 SWALL:Q8ZIT2 (EMBL:AJ414142) (163 aa) fasta scores: E(): 1.4e-40%2C77.91 38d in 163 aa%2C and to Escherichia coli hypothetical protein precursor YjjA or b4360 SWALL:YJJA_ECOLI (SWALL:P18390) (164 aa) fasta scores: E(): 1.8e-20%2C 45.39 id in 163 aa. Contains a possible N-terminal hydrophobic region.	gene	gene529	http://www.ncbi.nlm.nih.gov/gene/?term=YE0521
YE0522	YE0522		YE0522	591339	591899	-	hypothetical protein	no signiificant database hits	gene	gene530	http://www.ncbi.nlm.nih.gov/gene/?term=YE0522
YE0523	YE0523		YE0523	592004	592294	-	autoinducer-2 (AI-2) modifying protein LsrG		gene	gene531	http://www.ncbi.nlm.nih.gov/gene/?term=YE0523
YE0524	YE0524		YE0524	592356	593231	-	aldolase		gene	gene532	http://www.ncbi.nlm.nih.gov/gene/?term=YE0524
YE0525	YE0525		YE0525	593287	594321	-	substrate-binding protein		gene	gene533	http://www.ncbi.nlm.nih.gov/gene/?term=YE0525
YE0526	YE0526		YE0526	594378	595373	-	ABC transporter permease		gene	gene534	http://www.ncbi.nlm.nih.gov/gene/?term=YE0526
YE0527	YE0527		YE0527	595370	596359	-	ABC transporter permease		gene	gene535	http://www.ncbi.nlm.nih.gov/gene/?term=YE0527
YE0528	YE0528		YE0528	596446	598029	-	ABC transporter ATP-binding protein		gene	gene536	http://www.ncbi.nlm.nih.gov/gene/?term=YE0528
YE0529	YE0529		YE0529	598407	599384	+	transcriptional regulatory protein		gene	gene537	http://www.ncbi.nlm.nih.gov/gene/?term=YE0529
YE0530	YE0530		YE0530	599707	601257	+	autoinducer-2 (AI-2) kinase		gene	gene538	http://www.ncbi.nlm.nih.gov/gene/?term=YE0530
YE0531	YE0531		YE0531	601930	602877	+	lipopolysaccharide core biosynthesis protein		gene	gene539	http://www.ncbi.nlm.nih.gov/gene/?term=YE0531
YE0532	YE0532		YE0532	602964	604187	+	O-antigen biosynthesis protein		gene	gene540	http://www.ncbi.nlm.nih.gov/gene/?term=YE0532
YE0534	YE0534	arcD	arcD	605641	607149	+	arginine/ornithine antiporter	Similar to Pseudomonas aeruginosa arginine/ornithine antiporter ArcD or Pa5170 SWALL:ARCD_PSEAE (SWALL:P18275) (482 aa) fasta scores: E(): 1.1e-40%2C 52.06 38d in 509 aa and Rhizobium meliloti probable arcd1 arginine/ornithine antiporter ArcD1 or Ra0913 or sma1667 SWALL:Q92YG7 (EMBL:AE007277) (475 aa) fasta scores: E(): 1.9e-59%2C 59.11 38d in 499 aa	gene	gene541	http://www.ncbi.nlm.nih.gov/gene/?term=YE0534
YE0535	YE0535	arcA	arcA	607165	608448	+	arginine deiminase	catalyzes the degradation of arginine to citruline and ammonia	gene	gene542	http://www.ncbi.nlm.nih.gov/gene/?term=YE0535
YE0536	YE0536		YE0536	608930	610012	+	lipoprotein		gene	gene543	http://www.ncbi.nlm.nih.gov/gene/?term=YE0536
YE0537	YE0537		YE0537	610012	613098	+	multi-drug efflux protein		gene	gene544	http://www.ncbi.nlm.nih.gov/gene/?term=YE0537
YE0538	YE0538		YE0538	613229	614563	+	transposase for insertion sequence element IS1660	Highly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 9.8e-166%2C89.54 38d in 440 aa and to Pantoea agglomerans insertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 1.7e-86%2C 52.42 38d in 433 aa	gene	gene545	http://www.ncbi.nlm.nih.gov/gene/?term=YE0538
YE0539	YE0539	gldA	gldA	614850	615944	+	glycerol dehydrogenase	Similar to Citrobacter freundii glycerol dehydrogenase DhaD SWALL:GLDA_CITFR (SWALL:P45511) (365 aa) fasta scores: E(): 3.2e-103%2C 73.82 38d in 363 aa and Escherichia coli glycerol dehydrogenase GldA or b3945 SWALL:GLDA_ECOLI (SWALL:P32665) (367 aa) fasta scores: E(): 6.4e-80%2C 58.12 38d in 363 aa	gene	gene546	http://www.ncbi.nlm.nih.gov/gene/?term=YE0539
YE0540	YE0540	dhaK	dhaK	615982	617106	+	dihydroxyacetone kinase subunit DhaK	with DhaL and DhaM forms dihydroxyacetone kinase%2C which is responsible for phosphorylating dihydroxyacetone%3B DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase	gene	gene547	http://www.ncbi.nlm.nih.gov/gene/?term=YE0540
YE0541	YE0541		YE0541	617124	617756	+	hypothetical protein		gene	gene548	http://www.ncbi.nlm.nih.gov/gene/?term=YE0541
YE0542	YE0542		YE0542	617790	619223	+	dihydroxyacetone kinase subunit DhaM	phosphotransferaese subunit%3B phosphorylates dihydroxyacetone along with DhaK/DhaL	gene	gene549	http://www.ncbi.nlm.nih.gov/gene/?term=YE0542
YE0543	YE0543		YE0543	619269	620474	-	glycosyltransferase	Similar to many possible glycosyltransferases e.g. Streptomyces lincolnensis LmbT protein SWALL:Q54374 (EMBL:X79146) (411 aa) fasta scores: E(): 1.3e-13%2C 25.94 id in 316 aa%2C and to Pyrobaculum aerophilum Pae0440 SWALL:Q8ZZ46 (EMBL:AE009767) (360 aa) fasta scores: E(): 1.9e-05%2C 26.77 38d in 310 aa	gene	gene550	http://www.ncbi.nlm.nih.gov/gene/?term=YE0543
YE0544	YE0544		YE0544	620654	622363	-	transferase	Similar in parts to many transferases: Rhizobium sp. nodulation protein NolO or Y4hD SWALL:NOLO_RHISN (SWALL:P55474) (680 aa) fasta scores: E(): 1.1e-44%2C 32.94 id in 607 aa and Ralstonia solanacearum putative transferase protein Rsp0788 or rs01919 SWALL:Q8XRP3 (EMBL:AL646080) (581 aa) fasta scores: E(): 2.7e-42%2C35.71 38d in 490 aa	gene	gene551	http://www.ncbi.nlm.nih.gov/gene/?term=YE0544
YE0545	YE0545		YE0545	622394	623896	-	oxidoreductase	Similar to Streptomyces griseus NADH:N-amidino-scyllo-inosamine oxidoreductase lying within the streptomycin biosynthetic operon StsB SWALL:P72455 (EMBL:Y08763) (489 aa) fasta scores: E(): 2.8e-30%2C 31.45 38d in 461 aa	gene	gene552	http://www.ncbi.nlm.nih.gov/gene/?term=YE0545
YE0546	YE0546		YE0546	623925	625358	-	hypothetical protein	no significant database hits	gene	gene553	http://www.ncbi.nlm.nih.gov/gene/?term=YE0546
YE0547	YE0547		YE0547	625375	626550	-	membrane transport protein	Similar to many possible membrane transport proteins including: Rhizobium meliloti putative transport protein R03272 or smc03889 SWALL:Q92L18 (EMBL:AL591793) (379 aa) fasta scores: E(): 3.1e-24%2C 26.75 38d in 385 aa%2CYersinia pestis putative membrane protein Ypo1221 SWALL:Q8ZGR2 (EMBL:AJ414147) (384 aa) fasta scores: E(): 4e-19%2C 26.12 38d in 379 aa and to Borrelia burgdorferi multidrug-efflux transporter Bbi26 SWALL:O50880 (EMBL:AE000789) (392 aa) fasta scores: E(): 2e-05%2C 22.42 id in 388 aa	gene	gene554	http://www.ncbi.nlm.nih.gov/gene/?term=YE0547
YE0548	YE0548		YE0548	626577	627443	-	hypothetical protein	Similar to Anabaena sp. hypothetical protein All3084 all3084 SWALL:Q8YSK1 (EMBL:AP003591) (222 aa) fasta scores: E(): 1.2e-06%2C 29.24 38d in 212 aa	gene	gene555	http://www.ncbi.nlm.nih.gov/gene/?term=YE0548
YE0549	YE0549		YE0549	627938	629023	+	pectinesterase		gene	gene556	http://www.ncbi.nlm.nih.gov/gene/?term=YE0549
YE0550	YE0550	dhaR	dhaR	629026	630945	-	DNA-binding transcriptional regulator DhaR	Positively regulates the dhaKLM operon from a sigma-70 promoter	gene	gene557	http://www.ncbi.nlm.nih.gov/gene/?term=YE0550
YE0550A	YE0550A	scrR	scrR	630932	631966	-	sucrose operon repressor	Similar to Klebsiella pneumoniae sucrose operon repressor ScrR SWALL:SCRR_KLEPN (SWALL:P37076) (334 aa) fasta scores: E(): 2e-87%2C 64.79 38d in 338 aa and Salmonella typhimurium sucrose operon repressor ScrR SWALL:SCRR_SALTY (SWALL:P37077) (334 aa) fasta scores: E(): 3.6e-87%2C 64.77 38d in 335 aa	gene	gene558	http://www.ncbi.nlm.nih.gov/gene/?term=YE0550A
YE0551	YE0551	scrB	scrB	632013	633422	-	sucrose-6-phosphate hydrolase	Similar to Klebsiella pneumoniae sucrose-6-phosphate hydrolase ScrB SWALL:SCRB_KLEPN (SWALL:P27217) (465 aa) fasta scores: E(): 1.2e-113%2C56.31 38d in 467 aa and Salmonella typhimurium sucrose-6-phosphate hydrolase ScrB SWALL:SCRB_SALTY (SWALL:P37075) (466 aa) fasta scores: E(): 5e-112%2C 54.58 id in 469 aa	gene	gene559	http://www.ncbi.nlm.nih.gov/gene/?term=YE0551
YE0552	YE0552	scrA	scrA	633422	634792	-	PTSsystem sucrose-specific transporter subunit IIBC	Similar to Salmonella typhimurium PTS system%2Csucrose-specific IIbc component ScrA SWALL:PTSB_SALTY (SWALL:P08470) (456 aa) fasta scores: E(): 1.7e-140%2C83.11 38d in 456 aa and Klebsiella pneumoniae PTS system%2Csucrose-specific IIbc component ScrA SWALL:PTSB_KLEPN (SWALL:P27219) (456 aa) fasta scores: E(): 1.9e-140%2C82.45 38d in 456 aa	gene	gene560	http://www.ncbi.nlm.nih.gov/gene/?term=YE0552
YE0553	YE0553	scrY	scrY	634860	636398	-	sucrose porin	Similar to Salmonella typhimurium sucrose porin precursor ScrY SWALL:SCRY_SALTY (SWALL:P22340) (505 aa) fasta scores: E(): 2.7e-129%2C 65.43 38d in 512 aa and Klebsiella pneumoniae sucrose porin precursor ScrY SWALL:SCRY_KLEPN (SWALL:P27218) (505 aa) fasta scores: E(): 2.7e-127%2C 64.85 38d in 515 aa	gene	gene561	http://www.ncbi.nlm.nih.gov/gene/?term=YE0553
YE0554	YE0554	scrK	scrK	636697	637632	-	aminoimidazole riboside kinase	phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P)%3B synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least	gene	gene562	http://www.ncbi.nlm.nih.gov/gene/?term=YE0554
YE0555	YE0555		YE0555	637836	638981	+	iron transporter	Similar to many transport proteins including: Rhizobium meliloti putative transport transmembrane protein R02271 or smc01659 SWALL:Q92ND7 (EMBL:AL591790) (377 aa) fasta scores: E(): 3.3e-39%2C 32.79 38d in 372 aa and Methanosarcina acetivorans Fe FecC or ma2148 SWALL:AAM05546 (EMBL:AE010901) (389 aa) fasta scores: E(): 7.3e-37%2C 31.75 38d in 381 aa	gene	gene563	http://www.ncbi.nlm.nih.gov/gene/?term=YE0555
YE0556	YE0556		YE0556	639479	641635	+	iron transporter	Similar to Escherichia coli iron(III) dicitrate transport system FecA or b4291 SWALL:FECA_ECOLI (SWALL:P13036) (774 aa) fasta scores: E(): 8.4e-78%2C 44.65 id in 701 aa%2C and to Pseudomonas aeruginosa probable Tonb-dependent receptor Pa3268 SWALL:Q9HYX3 (EMBL:AE004749) (721 aa) fasta scores: E(): 1.4e-135%2C55.75 38d in 739 aa	gene	gene564	http://www.ncbi.nlm.nih.gov/gene/?term=YE0556
YE0557	YE0557	hmsT	hmsT	642071	643171	-	HmsT protein		gene	gene565	http://www.ncbi.nlm.nih.gov/gene/?term=YE0557
YE0558	YE0558		YE0558	643558	643782	+	hypothetical protein		gene	gene566	http://www.ncbi.nlm.nih.gov/gene/?term=YE0558
YE0559	YE0559		YE0559	644247	645335	-	LysR family regulatory protein		gene	gene569	http://www.ncbi.nlm.nih.gov/gene/?term=YE0559
YE0560	YE0560		YE0560	645290	646282	+	oxidoreductase	Similar to many including: Pseudomonas aeruginosa probable oxidoreductase Pa2535 SWALL:Q9I0U9 (EMBL:AE004681) (331 aa) fasta scores: E(): 4.9e-90%2C68.48 38d in 330 aa and to Salmonella typhi putative aldo/keto reductase Sty0158 SWALL:Q8Z9G1 (EMBL:AL627265) (329 aa) fasta scores: E(): 2.8e-84%2C 65.04 38d in 329 aa	gene	gene570	http://www.ncbi.nlm.nih.gov/gene/?term=YE0560
YE0561	YE0561	rsmC	rsmC	646301	647344	-	16S ribosomal RNA m2G1207 methyltransferase	16S rRNA M2G1207 methyltransferase%3B one of many enzymes that modify bases of the ribosomal RNA%3B this enzyme methylates the G at position 1207 of the small ribosomal subunit	gene	gene571	http://www.ncbi.nlm.nih.gov/gene/?term=YE0561
YE0562	YE0562	b4372	b4372	647457	647894	+	DNA polymerase III subunit psi	with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB	gene	gene572	http://www.ncbi.nlm.nih.gov/gene/?term=YE0562
YE0563	YE0563	rimI	rimI	647839	648282	+	ribosomal-protein-alanine N-acetyltransferase	alanine acetyltransferase that specifically acetylates ribosomal protein S18	gene	gene573	http://www.ncbi.nlm.nih.gov/gene/?term=YE0563
YE0564	YE0564	prfC	prfC	648533	650122	+	peptide chain release factor 3	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred%3B GDP/GTP-binding protein	gene	gene574	http://www.ncbi.nlm.nih.gov/gene/?term=YE0564
YE0565	YE0565	b4376	b4376	650433	651047	+	hypothetical protein		gene	gene575	http://www.ncbi.nlm.nih.gov/gene/?term=YE0565
YE0565a	YE0565a		YE0565a	651383	651544	+	hypothetical protein		gene	gene576	http://www.ncbi.nlm.nih.gov/gene/?term=YE0565a
YE0567	YE0567		YE0567	651616	652869	+	hypothetical protein		gene	gene577	http://www.ncbi.nlm.nih.gov/gene/?term=YE0567
YE0568	YE0568		YE0568	652890	653687	+	metalloenzyme		gene	gene578	http://www.ncbi.nlm.nih.gov/gene/?term=YE0568
YE0569	YE0569		YE0569	653889	655160	+	Na+ dependent nucleoside transporter-family protein		gene	gene579	http://www.ncbi.nlm.nih.gov/gene/?term=YE0569
YE0570	YE0570	deoC	deoC	655540	656337	+	deoxyribose-phosphate aldolase	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate	gene	gene580	http://www.ncbi.nlm.nih.gov/gene/?term=YE0570
YE0571	YE0571	deoA	deoA	656425	657747	+	thymidine phosphorylase	Catalyzes the reversible phosphorolysis of thymidine%2C deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate	gene	gene581	http://www.ncbi.nlm.nih.gov/gene/?term=YE0571
YE0572	YE0572	b4383	b4383	657801	659024	+	phosphopentomutase	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose	gene	gene582	http://www.ncbi.nlm.nih.gov/gene/?term=YE0572
YE0574	YE0574	deoD	deoD	659248	659973	+	purine nucleoside phosphorylase	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate	gene	gene583	http://www.ncbi.nlm.nih.gov/gene/?term=YE0574
YE0575	YE0575		YE0575	660151	661494	+	hypothetical protein	Similar to Escherichia coli hypothetical protein YjjJ or B4385 SWALL:YJJJ_ECOLI (SWALL:P39410) (443 aa) fasta scores: E(): 7.3e-75%2C 46.56 38d in 451 aa	gene	gene584	http://www.ncbi.nlm.nih.gov/gene/?term=YE0575
YE0576	YE0576	smp	smp	661521	662198	-	hypothetical protein		gene	gene585	http://www.ncbi.nlm.nih.gov/gene/?term=YE0576
YE0578	YE0578	serB	serB	662434	663414	+	phosphoserine phosphatase	catalyzes the formation of serine from O-phosphoserine	gene	gene586	http://www.ncbi.nlm.nih.gov/gene/?term=YE0578
YE0579	YE0579	b4389	b4389	663442	664827	+	DNA repair protein RadA	Sms%3B stabilizes the strand-invasion intermediate during the DNA repair%3B involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents	gene	gene587	http://www.ncbi.nlm.nih.gov/gene/?term=YE0579
YE0580	YE0580	b4390	b4390	664901	666184	+	nicotinamide-nucleotide adenylyltransferase	catalyzes the formation of NAD(+) from nicotinamide ribonucleotide	gene	gene588	http://www.ncbi.nlm.nih.gov/gene/?term=YE0580
YE0581	YE0581		YE0581	666181	667182	-	oxidoreductase	Similar to several including: Bacillus halodurans alginate lyase Bh0738 SWALL:Q9KEW1 (EMBL:AP001509) (339 aa) fasta scores: E(): 1.5e-53%2C 49.11 38d in 338 aa and to Pseudomonas aeruginosa probable oxidoreductase Pa3567 SWALL:Q9HY50 (EMBL:AE004777) (337 aa) fasta scores: E(): 4.9e-52%2C 46.13 38d in 336 aa	gene	gene589	http://www.ncbi.nlm.nih.gov/gene/?term=YE0581
YE0582	YE0582		YE0582	667345	668256	+	LysR family transcriptional regulator	Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa3135 SWALL:Q9HZ90 (EMBL:AE004737) (306 aa) fasta scores: E(): 4.8e-32%2C 36.8 id in 307 aa%2C and to Rhizobium loti transcriptional regulator Mlr7606 SWALL:Q985M8 (EMBL:AP003012) (299 aa) fasta scores: E(): 4.8e-30%2C 37.11 38d in 291 aa	gene	gene590	http://www.ncbi.nlm.nih.gov/gene/?term=YE0582
YE0583	YE0583		YE0583	668337	669467	+	hypothetical protein		gene	gene591	http://www.ncbi.nlm.nih.gov/gene/?term=YE0583
YE0584	YE0584		YE0584	669527	671173	-	ABC transporter ATP-binding protein	ChvD%3B in Agrobacterium tumefaciens%2C mutations in both Walker boxes were found to affect virulence	gene	gene592	http://www.ncbi.nlm.nih.gov/gene/?term=YE0584
YE0585	YE0585		YE0585	671835	672344	-	lipoprotein	Similar to many lipoproteins including: Yersinia pestis putative lipoprotein Ypo0448 SWALL:Q8ZIP6 (EMBL:AJ414142) (168 aa) fasta scores: E(): 7.5e-47%2C75.59 38d in 168 aa and to Escherichia coli putative lipoprotein YfiB or b2605 SWALL:YFIB_ECOLI (SWALL:P07021) (160 aa) fasta scores: E(): 8.2e-23%2C 47.29 38d in 148 aa	gene	gene593	http://www.ncbi.nlm.nih.gov/gene/?term=YE0585
YE0586	YE0586		YE0586	672355	673578	-	hypothetical protein		gene	gene594	http://www.ncbi.nlm.nih.gov/gene/?term=YE0586
YE0587	YE0587		YE0587	673677	674309	-	hypothetical protein		gene	gene595	http://www.ncbi.nlm.nih.gov/gene/?term=YE0587
YE0588	YE0588		YE0588	674513	677158	-	cation-transporting P-type ATPase		gene	gene596	http://www.ncbi.nlm.nih.gov/gene/?term=YE0588
YE0589	YE0589	slt	slt	677714	679633	+	lytic murein transglycosylase	catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan	gene	gene597	http://www.ncbi.nlm.nih.gov/gene/?term=YE0589
YE0590	YE0590	trpR	trpR	679880	680212	+	Trp operon repressor	When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription	gene	gene598	http://www.ncbi.nlm.nih.gov/gene/?term=YE0590
YE0591	YE0591	yjjX	yjjX	680221	680748	-	NTPase	pyrophosphatase%3B has activity against dUTP and dITP%3B the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226%3B in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms%3B in Escherichia coli overexpression of this gene leads to resistance to an HMP analog	gene	gene599	http://www.ncbi.nlm.nih.gov/gene/?term=YE0591
YE0592	YE0592	gpmB	gpmB	680805	681452	+	phosphoglycerate mutase	catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate	gene	gene600	http://www.ncbi.nlm.nih.gov/gene/?term=YE0592
YE0593	YE0593	rob	rob	681449	682315	-	right origin-binding protein		gene	gene601	http://www.ncbi.nlm.nih.gov/gene/?term=YE0593
YE0594	YE0594	creA	creA	682540	683010	+	hypothetical protein		gene	gene602	http://www.ncbi.nlm.nih.gov/gene/?term=YE0594
YE0595	YE0595	arcA	arcA	683089	683805	-	two-component response regulator		gene	gene603	http://www.ncbi.nlm.nih.gov/gene/?term=YE0595
YE0598	YE0598		YE0598	684458	685244	-			gene	gene604	http://www.ncbi.nlm.nih.gov/gene/?term=YE0598
YE0599	YE0599		YE0599	685300	686637	-	transposase for insertion sequence element IS1660	Highly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 2e-165%2C 89.72 id in 438 aa%2C and to Pantoea agglomerans nsertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 1.8e-86%2C 52.42 38d in 433 aa. This IS element has been partially disrupted by the insertion of IS1665 removing 19 bp.	gene	gene605	http://www.ncbi.nlm.nih.gov/gene/?term=YE0599
YE0600	YE0600	thrA	thrA	687253	689712	+	bifunctional aspartokinase I/homoserine dehydrogenase I	multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways	gene	gene607	http://www.ncbi.nlm.nih.gov/gene/?term=YE0600
YE0601	YE0601	thrB	thrB	689715	690644	+	homoserine kinase	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate	gene	gene608	http://www.ncbi.nlm.nih.gov/gene/?term=YE0601
YE0602	YE0602	thrC	thrC	690648	691937	+	threonine synthase	catalyzes the formation of L-threonine from O-phospho-L-homoserine	gene	gene609	http://www.ncbi.nlm.nih.gov/gene/?term=YE0602
YE0603	YE0603		YE0603	692084	692860	-	hypothetical protein		gene	gene610	http://www.ncbi.nlm.nih.gov/gene/?term=YE0603
YE0604	YE0604	talB	talB	693271	694224	+	transaldolase B		gene	gene611	http://www.ncbi.nlm.nih.gov/gene/?term=YE0604
YE0605	YE0605	mogA	mogA	694381	694968	+	molybdenum cofactor biosynthesis protein MogA	forms a trimer%3B related to eukaryotic protein gephyrin%3B functions during molybdenum cofactor biosynthesis	gene	gene612	http://www.ncbi.nlm.nih.gov/gene/?term=YE0605
YE0606	YE0606		YE0606	695097	696464	+	transport protein		gene	gene613	http://www.ncbi.nlm.nih.gov/gene/?term=YE0606
YE0607	YE0607		YE0607	696532	698982	-	hypothetical protein		gene	gene614	http://www.ncbi.nlm.nih.gov/gene/?term=YE0607
YE0608	YE0608	yaaH	yaaH	699221	699814	-	hypothetical protein		gene	gene615	http://www.ncbi.nlm.nih.gov/gene/?term=YE0608
YE0609	YE0609	dnaK	dnaK	700187	702094	+	molecular chaperone DnaK	heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria	gene	gene616	http://www.ncbi.nlm.nih.gov/gene/?term=YE0609
YE0610	YE0610	dnaJ	dnaJ	702206	703336	+	chaperone protein DnaJ	chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion	gene	gene617	http://www.ncbi.nlm.nih.gov/gene/?term=YE0610
YE0611	YE0611	nhaA	nhaA	703567	704745	+	pH-dependent sodium/proton antiporter	exports sodium by using the electrochemical proton gradient to allow protons into the cell%3B functions in adaptation to high salinity and alkaline pH%3B activity increases at higher pH%3B downregulated at acidic pH	gene	gene618	http://www.ncbi.nlm.nih.gov/gene/?term=YE0611
YE0612	YE0612	nhaR	nhaR	704895	705794	+	transcriptional activator NhaR	Na+/H+ antiporter regulatory protein%3B activates the genes nhaA and osmC	gene	gene619	http://www.ncbi.nlm.nih.gov/gene/?term=YE0612
YE0613	YE0613	rpsT	rpsT	705938	706201	-	30S ribosomal protein S20	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase	gene	gene620	http://www.ncbi.nlm.nih.gov/gene/?term=YE0613
YE0615	YE0615	b0025	b0025	706615	707553	+	bifunctional riboflavin kinase/FMN adenylyltransferase	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN%3B in Bacillus the ribC gene has both flavokinase and FAD synthetase activities	gene	gene621	http://www.ncbi.nlm.nih.gov/gene/?term=YE0615
YE0616	YE0616	ileS	ileS	707585	710401	+	isoleucyl-tRNA synthetase	IleRS%3B catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile)%3B since isoleucine and other amino acids such as valine are similar%2C there are additional editing function in this enzyme%3B one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile)%3B there are two active sites%2C one for aminoacylation and one for editing%3B class-I aminoacyl-tRNA synthetase family type 1 subfamily%3B some organisms carry two different copies of this enzyme	gene	gene622	http://www.ncbi.nlm.nih.gov/gene/?term=YE0616
YE0617	YE0617	lspA	lspA	710401	710910	+	lipoprotein signal peptidase	lipoprotein signal peptidase%3B integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis	gene	gene623	http://www.ncbi.nlm.nih.gov/gene/?term=YE0617
YE0618	YE0618	b0028	b0028	710960	711397	+	FKBP-type peptidyl-prolyl cis-trans isomerase		gene	gene624	http://www.ncbi.nlm.nih.gov/gene/?term=YE0618
YE0619	YE0619	ispH	ispH	711378	712331	+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP)%3B functions in the nonmevalonate isoprenoid biosynthesis pathway	gene	gene625	http://www.ncbi.nlm.nih.gov/gene/?term=YE0619
YE0620	YE0620	b0031	b0031	712666	713487	+	dihydrodipicolinate reductase	catalyzes the reduction of 2%2C3-dihydrodipicolinate to 2%2C3%2C4%2C5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis	gene	gene626	http://www.ncbi.nlm.nih.gov/gene/?term=YE0620
YE0621	YE0621	b0032	b0032	713960	715123	+	carbamoyl phosphate synthase small subunit	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways%3B forms an octamer composed of four CarAB dimers	gene	gene627	http://www.ncbi.nlm.nih.gov/gene/?term=YE0621
YE0622	YE0622	carB	carB	715140	718373	+	carbamoyl phosphate synthase large subunit	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate%3B CarB is responsible for the amidotransferase activity	gene	gene628	http://www.ncbi.nlm.nih.gov/gene/?term=YE0622
YE0623	YE0623		YE0623	718571	719185	-	LysE type translocator		gene	gene629	http://www.ncbi.nlm.nih.gov/gene/?term=YE0623
YE0624	YE0624	b4364	b4364	719338	720135	+	hypothetical protein		gene	gene630	http://www.ncbi.nlm.nih.gov/gene/?term=YE0624
YE0625	YE0625		YE0625	720129	720599	+	hypothetical protein		gene	gene631	http://www.ncbi.nlm.nih.gov/gene/?term=YE0625
YE0626	YE0626	folA	folA	720773	721234	+	dihydrofolate reductase	catalyzes the reduction of dihydrofolate to tetrahydrofolate	gene	gene632	http://www.ncbi.nlm.nih.gov/gene/?term=YE0626
YE0628	YE0628	apaH	apaH	721382	722260	-	diadenosine tetraphosphatase	hydrolyzes P(1)%2CP(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP	gene	gene633	http://www.ncbi.nlm.nih.gov/gene/?term=YE0628
YE0629	YE0629	apaG	apaG	722275	722652	-	ApaG protein	protein associated with Co2+ and Mg2+ efflux	gene	gene634	http://www.ncbi.nlm.nih.gov/gene/?term=YE0629
YE0630	YE0630	ksgA	ksgA	722666	723484	-	dimethyladenosine transferase	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA%3B mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin	gene	gene635	http://www.ncbi.nlm.nih.gov/gene/?term=YE0630
YE0631	YE0631	pdxA	pdxA	723477	724472	-	4-hydroxythreonine-4-phosphate dehydrogenase	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)	gene	gene636	http://www.ncbi.nlm.nih.gov/gene/?term=YE0631
YE0632	YE0632	b0053	b0053	724456	725760	-	peptidyl-prolyl cis-trans isomerase SurA	Chaperone involved in the folding of extracytoplasmic proteins%2C especially OmpA%2C OmpF and LamB	gene	gene637	http://www.ncbi.nlm.nih.gov/gene/?term=YE0632
YE0633	YE0633	b0054	b0054	725828	728194	-	organic solvent tolerance protein	determines N-hexane tolerance and is involved in outer membrane permeability	gene	gene638	http://www.ncbi.nlm.nih.gov/gene/?term=YE0633
YE0634	YE0634	djlA	djlA	728454	729206	+	Dna-J like membrane chaperone protein	functions as a co-chaperone with DnaK%3B involved in regulation of colanic acid capsule%3B inner membrane protein%3B dimerized via transmembrane domain%3B J-like domain is cytoplasmic and can functionally substitute for DnaJ%3B stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system	gene	gene639	http://www.ncbi.nlm.nih.gov/gene/?term=YE0634
YE0635	YE0635	rluA	rluA	729292	729882	-	ribosomal large subunit pseudouridine synthase A		gene	gene640	http://www.ncbi.nlm.nih.gov/gene/?term=YE0635
YE0636	YE0636	hepA	hepA	730023	732929	-	ATP-dependent helicase HepA	transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP%2C when it is trapped or immobilized on tightly supercoiled DNA	gene	gene641	http://www.ncbi.nlm.nih.gov/gene/?term=YE0636
YE0637	YE0637	dinA	dinA	733066	735438	-	DNA polymerase II	Has polymerase%2C DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C	gene	gene642	http://www.ncbi.nlm.nih.gov/gene/?term=YE0637
YE0639	YE0639		YE0639	735879	736649	+	DedA family membrane protein		gene	gene643	http://www.ncbi.nlm.nih.gov/gene/?term=YE0639
YE0640	YE0640	thiQ	thiQ	736636	737337	-	thiamine transporter ATP-binding subunit	with TbpA and ThiP is part of the thiamine and TPP transport system	gene	gene644	http://www.ncbi.nlm.nih.gov/gene/?term=YE0640
YE0641	YE0641	thiP	thiP	737324	738871	-	thiamine transporter membrane protein	permease%3B with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell%3B repressed in presence of exogenous thiamine	gene	gene645	http://www.ncbi.nlm.nih.gov/gene/?term=YE0641
YE0642	YE0642	tbpA	tbpA	738907	739869	-	thiamine transporter substrate binding subunit	part of the thiamine and TPP transport system tbpA-thiPQ	gene	gene646	http://www.ncbi.nlm.nih.gov/gene/?term=YE0642
YE0643	YE0643		YE0643	740349	741152	+	hypothetical protein	Weakly similar to Yersinia pestis hypothetical protein Ypo2963 SWALL:Q8ZCL9 (EMBL:AJ414154) (282 aa) fasta scores: E(): 3.7e-12%2C 27.02 38d in 259 aa	gene	gene648	http://www.ncbi.nlm.nih.gov/gene/?term=YE0643
YE0644	YE0644		YE0644	741654	743315	-	transcriptional regulator SgrR	activates sgrS under glucose-phosphate stress conditions	gene	gene649	http://www.ncbi.nlm.nih.gov/gene/?term=YE0644
YE0645	YE0645		YE0645	743440	744339	+	pyruvate formate-lyase 3 activating protein	Similar to many pyruvate formate-lyase 3 activating enzymes including: Escherichia coli putative YbiY or b0824 SWALL:PFLE_ECOLI (SWALL:P75794) (308 aa) fasta scores: E(): 6.9e-78%2C 63.88 38d in 299 aa and to Salmonella typhi putative YbiY or Sty0883 SWALL:Q8Z867 (EMBL:AL627268) (299 aa) fasta scores: E(): 3.2e-79%2C64.54 38d in 299 aa	gene	gene650	http://www.ncbi.nlm.nih.gov/gene/?term=YE0645
YE0646	YE0646		YE0646	744344	746776	+	formate acetyltransferase	Similar to Escherichia coli putative formate acetyltransferase 3 YbiW or b0823 SWALL:PFLF_ECOLI (SWALL:P75793) (810 aa) fasta scores: E(): 0%2C 84.56 38d in 810 aa%2C and to Salmonella typhimurium putative pyruvate formate lyase pflf or stm0843 SWALL:Q8ZQM6 (EMBL:AE008735) (810 aa) fasta scores: E(): 0%2C 84.44 38d in 810 aa	gene	gene651	http://www.ncbi.nlm.nih.gov/gene/?term=YE0646
YE0647	YE0647		YE0647	746906	747175	+	DNA-damage-inducible protein		gene	gene652	http://www.ncbi.nlm.nih.gov/gene/?term=YE0647
YE0647a	YE0647a		YE0647a	747178	747444	+	hypothetical protein		gene	gene653	http://www.ncbi.nlm.nih.gov/gene/?term=YE0647a
YE0648	YE0648	setA	setA	747546	748727	+	sugar efflux transporter		gene	gene654	http://www.ncbi.nlm.nih.gov/gene/?term=YE0648
YE0649	YE0649	mtr	mtr	748884	750146	-	tryptophan permease	tryptophan transporter of high affinity	gene	gene655	http://www.ncbi.nlm.nih.gov/gene/?term=YE0649
YE0650	YE0650	tnaA	tnaA	750255	751655	-	tryptophanase	tryptophan indole-lyase%3B catalyzes the formation of indole and pyruvate from tryptophan	gene	gene656	http://www.ncbi.nlm.nih.gov/gene/?term=YE0650
YE0651	YE0651	leuD	leuD	752330	752950	-	isopropylmalate isomerase small subunit	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis%3B forms a heterodimer of LeuC/D	gene	gene657	http://www.ncbi.nlm.nih.gov/gene/?term=YE0651
YE0652	YE0652	leuC	leuC	752965	754395	-	isopropylmalate isomerase large subunit	dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate	gene	gene658	http://www.ncbi.nlm.nih.gov/gene/?term=YE0652
YE0653	YE0653	leuB	leuB	754397	755494	-	3-isopropylmalate dehydrogenase	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis	gene	gene659	http://www.ncbi.nlm.nih.gov/gene/?term=YE0653
YE0654	YE0654	leuA	leuA	755491	757053	-	2-isopropylmalate synthase	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis	gene	gene660	http://www.ncbi.nlm.nih.gov/gene/?term=YE0654
YE0655	YE0655	leuO	leuO	758158	759114	+	leucine transcriptional activator	activator for leuABCD operon%3B member of LysR family of transcriptional activators	gene	gene661	http://www.ncbi.nlm.nih.gov/gene/?term=YE0655
YE0656	YE0656		YE0656	759447	761246	+	AMP-binding protein		gene	gene662	http://www.ncbi.nlm.nih.gov/gene/?term=YE0656
YE0658	YE0658	ilvI	ilvI	761712	763439	+	acetolactate synthase 3 catalytic subunit	catalyzes the formation of 2-acetolactate from pyruvate%2C leucine sensitive	gene	gene663	http://www.ncbi.nlm.nih.gov/gene/?term=YE0658
YE0659	YE0659	ilvH	ilvH	763442	763936	+	acetolactate synthase 3 regulatory subunit	with IlvI catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase 3 small subunit	gene	gene664	http://www.ncbi.nlm.nih.gov/gene/?term=YE0659
YE0661	YE0661	cra	cra	764279	765283	+	DNA-binding transcriptional regulator FruR	binds D-fructose as an inducer%3B involved in regulation of operons for central pathways of carbon metabolism	gene	gene665	http://www.ncbi.nlm.nih.gov/gene/?term=YE0661
YE0662	YE0662		YE0662	765339	765785	-	hypothetical protein		gene	gene666	http://www.ncbi.nlm.nih.gov/gene/?term=YE0662
YE0663	YE0663		YE0663	766702	767160	+	cell division protein MraZ	MraZ%3B UPF0040%3B crystal structure shows similarity to AbrB	gene	gene667	http://www.ncbi.nlm.nih.gov/gene/?term=YE0663
YE0664	YE0664	mraW	mraW	767163	768125	+	S-adenosyl-methyltransferase MraW		gene	gene668	http://www.ncbi.nlm.nih.gov/gene/?term=YE0664
YE0665	YE0665	ftsL	ftsL	768122	768442	+	cell division protein FtsL	membrane bound cell division protein at septum containing leucine zipper motif	gene	gene669	http://www.ncbi.nlm.nih.gov/gene/?term=YE0665
YE0666	YE0666	ftsI	ftsI	768503	770266	+	penicillin-binding protein 3		gene	gene670	http://www.ncbi.nlm.nih.gov/gene/?term=YE0666
YE0667	YE0667	murE	murE	770268	771740	+	UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase	involved in cell wall formation%3B peptidoglycan synthesis%3B cytoplasmic enzyme%3B catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate	gene	gene671	http://www.ncbi.nlm.nih.gov/gene/?term=YE0667
YE0668	YE0668	murF	murF	771737	773101	+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase		gene	gene672	http://www.ncbi.nlm.nih.gov/gene/?term=YE0668
YE0669	YE0669	mraY	mraY	773095	774177	+	phospho-N-acetylmuramoyl-pentapeptide-transferase	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan	gene	gene673	http://www.ncbi.nlm.nih.gov/gene/?term=YE0669
YE0670	YE0670	murD	murD	774180	775514	+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase	UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B involved in peptidoglycan biosynthesis%3B cytoplasmic%3B catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation	gene	gene674	http://www.ncbi.nlm.nih.gov/gene/?term=YE0670
YE0671	YE0671	ftsW	ftsW	775514	776716	+	cell division protein FtsW	integral membrane protein involved in stabilizing FstZ ring during cell division	gene	gene675	http://www.ncbi.nlm.nih.gov/gene/?term=YE0671
YE0672	YE0672	murG	murG	776713	777780	+	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B involved in cell wall formation%3B inner membrane-associated%3B last step of peptidoglycan synthesis	gene	gene676	http://www.ncbi.nlm.nih.gov/gene/?term=YE0672
YE0673	YE0673	murC	murC	777854	779329	+	UDP-N-acetylmuramate--L-alanine ligase	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis	gene	gene677	http://www.ncbi.nlm.nih.gov/gene/?term=YE0673
YE0674	YE0674	ddl	ddl	779322	780242	+	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase%3B DdlA%3B DdlB%3B cytoplasmic%3B catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis%3B there are two forms of this enzyme in Escherichia coli	gene	gene678	http://www.ncbi.nlm.nih.gov/gene/?term=YE0674
YE0675	YE0675	ftsQ	ftsQ	780244	781101	+	cell division protein FtsQ	involved in septum formation	gene	gene679	http://www.ncbi.nlm.nih.gov/gene/?term=YE0675
YE0676	YE0676	ftsA	ftsA	781098	782354	+	cell division protein FtsA	ATP-binding involved in recruitment of FtsK to Z ring%3B essential cell division protein%3B colocalizes with FtsZ through direct interaction to the septal ring structure%3B structurally similar to eukaryotic actin%3B binds directly to the cell membrane	gene	gene680	http://www.ncbi.nlm.nih.gov/gene/?term=YE0676
YE0677	YE0677	ftsZ	ftsZ	782427	783578	+	cell division protein FtsZ	GTPase%3B similar structure to tubulin%3B forms ring-shaped polymers at the site of cell division%3B other proteins such as FtsA%2C ZipA%2C and ZapA%2C interact with and regulate FtsZ function	gene	gene681	http://www.ncbi.nlm.nih.gov/gene/?term=YE0677
YE0678	YE0678	lpxC	lpxC	783664	784599	+	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	zinc-dependent%3B catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis	gene	gene682	http://www.ncbi.nlm.nih.gov/gene/?term=YE0678
YE0679	YE0679		YE0679	784809	785339	-	hypothetical protein		gene	gene683	http://www.ncbi.nlm.nih.gov/gene/?term=YE0679
YE0680	YE0680		YE0680	785362	785895	+	SecA regulator SecM	secM translational pause allows for the initiation of secA translation	gene	gene684	http://www.ncbi.nlm.nih.gov/gene/?term=YE0680
YE0681	YE0681	secA	secA	785973	788687	+	preprotein translocase subunit SecA	functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B proteins in this cluster correspond SecA1%3B SecA2 is not essential and seems to play a role in secretion of a subset of proteins	gene	gene685	http://www.ncbi.nlm.nih.gov/gene/?term=YE0681
YE0682	YE0682	mutT	mutT	788821	789207	+	nucleoside triphosphate pyrophosphohydrolase		gene	gene686	http://www.ncbi.nlm.nih.gov/gene/?term=YE0682
YE0683	YE0683		YE0683	789279	789485	-	zinc-binding protein		gene	gene687	http://www.ncbi.nlm.nih.gov/gene/?term=YE0683
YE0684	YE0684		YE0684	789530	790282	-	hypothetical protein		gene	gene688	http://www.ncbi.nlm.nih.gov/gene/?term=YE0684
YE0685	YE0685	coaE	coaE	790279	790899	-	dephospho-CoA kinase	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A%3B involved in coenzyme A biosynthesis	gene	gene689	http://www.ncbi.nlm.nih.gov/gene/?term=YE0685
YE0686	YE0686	guaC	guaC	791193	792236	+	guanosine 5'-monophosphate oxidoreductase	catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate	gene	gene690	http://www.ncbi.nlm.nih.gov/gene/?term=YE0686
YE0688	YE0688	hofC	hofC	792555	793754	-	type IV pilin biogenesis protein		gene	gene691	http://www.ncbi.nlm.nih.gov/gene/?term=YE0688
YE0689	YE0689	hofC	hofC	793751	795205	-	hypothetical protein	Similar to Yersinia pestis putative type II secretion system protein HofB or Ypo3426 SWALL:Q8ZBI4 (EMBL:AJ414157) (512 aa) fasta scores: E(): 2.8e-109%2C 71 id in 500 aa and to Escherichia coli protein transport protein HofB or b0107 SWALL:HOFB_ECOLI (SWALL:P36645) (461 aa) fasta scores: E(): 2.4e-70%2C 49.03 38d in 467 aa	gene	gene692	http://www.ncbi.nlm.nih.gov/gene/?term=YE0689
YE0690	YE0690	ppdD	ppdD	795222	795656	-	major pilin subunit		gene	gene693	http://www.ncbi.nlm.nih.gov/gene/?term=YE0690
YE0691	YE0691	nadC	nadC	795861	796769	-	quinolinate phosphoribosyltransferase	catalyzes the formation of pyridine-2%2C3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide	gene	gene694	http://www.ncbi.nlm.nih.gov/gene/?term=YE0691
YE0692	YE0692	ampD	ampD	796999	797463	+	N-acetyl-anhydromuranmyl-L-alanine amidase		gene	gene695	http://www.ncbi.nlm.nih.gov/gene/?term=YE0692
YE0693	YE0693	ampE	ampE	797608	798462	+	regulatory protein AmpE	involved in regulation of beta-lactamase%3B putative signaling protein	gene	gene696	http://www.ncbi.nlm.nih.gov/gene/?term=YE0693
YE0694	YE0694		YE0694	798922	806376	+	adhesin	Similar to many adhesins including: Escherichia coli O127:H6 intimin Eae or EaeA SWALL:EAE_ECO27 (SWALL:P19809) (939 aa) fasta scores: E(): 1.3e-57%2C 34.3 id in 720 aa and Yersinia pestis putative invasin Ypo3944 SWALL:Q8ZA73 (EMBL:AJ414159) (3013 aa) fasta scores: E(): 2.8e-74%2C 28.71 38d in 2173 aa	gene	gene697	http://www.ncbi.nlm.nih.gov/gene/?term=YE0694
YE0695	YE0695	aroP	aroP	806465	807838	-	aromatic amino acid transport protein		gene	gene698	http://www.ncbi.nlm.nih.gov/gene/?term=YE0695
YE0698	YE0698	pdhR	pdhR	808535	809299	+	transcriptional regulator PdhR	activates lctPRD operon%3B autoregulates itself through repression of pdhR-aceEF-lpdA operon%3B regulates pyruvate dehydrogenase complex	gene	gene699	http://www.ncbi.nlm.nih.gov/gene/?term=YE0698
YE0699	YE0699	aceE	aceE	809476	812139	+	pyruvate dehydrogenase subunit E1	E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC	gene	gene700	http://www.ncbi.nlm.nih.gov/gene/?term=YE0699
YE0701	YE0701	aceF	aceF	812153	814030	+	dihydrolipoamide acetyltransferase	E2 component of pyruvate dehydrogenase multienzyme complex%3B in Escherichia coli AceF contains three N-terminal lipoyl domains	gene	gene701	http://www.ncbi.nlm.nih.gov/gene/?term=YE0701
YE0702	YE0702	lpd	lpd	814406	815833	+	dihydrolipoamide dehydrogenase	E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex%3B catalyzes the oxidation of dihydrolipoamide to lipoamide	gene	gene702	http://www.ncbi.nlm.nih.gov/gene/?term=YE0702
YE0703	YE0703		YE0703	816140	817153	-	AraC family transcription regulator	Similar to several AraC-family transcriptional regulators: Salmonella typhi Sty0395 SWALL:Q8Z909 (EMBL:AL627266) (334 aa) fasta scores: E(): 4.3e-16%2C 28 id in 325 aa and Brucella melitensis Bmeii0104 SWALL:Q8YDS1 (EMBL:AE009648) (233 aa) fasta scores: E(): 2.2e-14%2C 29.85 38d in 201 aa	gene	gene703	http://www.ncbi.nlm.nih.gov/gene/?term=YE0703
YE0704	YE0704		YE0704	817425	819674	+	outer membrane receptor FepA	Fep%3B Cbt%3B Cbr%3B FeuB%3B FepA%3B PfeA%3B IroN%3B BfeA%3B outer membrane receptor of ferric enterobactin and colicins B and D%3B interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space	gene	gene704	http://www.ncbi.nlm.nih.gov/gene/?term=YE0704
YE0705	YE0705	acnB	acnB	820247	822844	+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate	gene	gene705	http://www.ncbi.nlm.nih.gov/gene/?term=YE0705
YE0706	YE0706		YE0706	823034	823396	+	hypothetical protein		gene	gene706	http://www.ncbi.nlm.nih.gov/gene/?term=YE0706
YE0707	YE0707	yddG	yddG	823440	824327	-	hypothetical protein		gene	gene707	http://www.ncbi.nlm.nih.gov/gene/?term=YE0707
YE0708	YE0708		YE0708	824685	825149	+	hypothetical protein	Weakly similar in parts to several hemagglutinin-related proteins: Ralstonia solanacearum Rsc0887 or Rs06116 SWALL:Q8Y106 (EMBL:AL646061) (3501 aa) fasta scores: E(): 0.00012%2C 32.11 38d in 109 aa and Neisseria meningitidis hemagglutinin/hemolysin-related protein Nmb1779 SWALL:Q9JY23 (EMBL:AE002527) (1995 aa) fasta scores: E(): 0.00032%2C 35.92 38d in 103 aa	gene	gene708	http://www.ncbi.nlm.nih.gov/gene/?term=YE0708
YE0709	YE0709	speD	speD	825271	826065	-	S-adenosylmethionine decarboxylase	S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine	gene	gene709	http://www.ncbi.nlm.nih.gov/gene/?term=YE0709
YE0710	YE0710	speE	speE	826090	826953	-	spermidine synthase	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine	gene	gene710	http://www.ncbi.nlm.nih.gov/gene/?term=YE0710
YE0711	YE0711	yacC	yacC	827068	827415	-	hypothetical protein		gene	gene711	http://www.ncbi.nlm.nih.gov/gene/?term=YE0711
YE0712	YE0712	yacK	yacK	827646	829247	+	multicopper oxidase	laccase%3B copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification	gene	gene712	http://www.ncbi.nlm.nih.gov/gene/?term=YE0712
YE0713	YE0713	b0125	b0125	829362	829898	+	hypoxanthine phosphoribosyltransferase		gene	gene713	http://www.ncbi.nlm.nih.gov/gene/?term=YE0713
YE0714	YE0714	yadF	yadF	830007	830669	-	carbonic anhydrase		gene	gene714	http://www.ncbi.nlm.nih.gov/gene/?term=YE0714
YE0715	YE0715	yadG	yadG	830904	831830	+	ABC transporter ATP-binding protein		gene	gene715	http://www.ncbi.nlm.nih.gov/gene/?term=YE0715
YE0716	YE0716	yadH	yadH	831827	832597	+	ABC transporter		gene	gene716	http://www.ncbi.nlm.nih.gov/gene/?term=YE0716
YE0717	YE0717		YE0717	833072	834262	+	hypothetical protein		gene	gene717	http://www.ncbi.nlm.nih.gov/gene/?term=YE0717
YE0718	YE0718	panD	panD	834502	834882	-	aspartate alpha-decarboxylase	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)	gene	gene718	http://www.ncbi.nlm.nih.gov/gene/?term=YE0718
YE0719	YE0719	panC	panC	835040	835894	-	pantoate--beta-alanine ligase	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine	gene	gene719	http://www.ncbi.nlm.nih.gov/gene/?term=YE0719
YE0720	YE0720	panB	panB	836068	836868	-	3-methyl-2-oxobutanoate hydroxymethyltransferase	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5%2C10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate	gene	gene720	http://www.ncbi.nlm.nih.gov/gene/?term=YE0720
YE0722	YE0722	folK	folK	837102	837581	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase		gene	gene721	http://www.ncbi.nlm.nih.gov/gene/?term=YE0722
YE0723	YE0723	pcnB	pcnB	837590	838912	-	poly(A) polymerase I	Polymerase that creates the 3' poly(A) tail found in some mRNA's	gene	gene722	http://www.ncbi.nlm.nih.gov/gene/?term=YE0723
YE0724	YE0724	yadB	yadB	839209	840138	-	glutamyl-Q tRNA(Asp) synthetase	this tRNA synthetase lacks the tRNA anticodon interaction domain%3B instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4%2C5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp%3B the modified tRNA does not bind elongation factor Tu	gene	gene723	http://www.ncbi.nlm.nih.gov/gene/?term=YE0724
YE0725	YE0725	dksA	dksA	840279	840734	-	RNA polymerase-binding transcription factor		gene	gene724	http://www.ncbi.nlm.nih.gov/gene/?term=YE0725
YE0726	YE0726	sfs1	sfs1	840914	841639	-	sugar fermentation stimulation protein A	Regulatory factor involved in maltose metabolism	gene	gene725	http://www.ncbi.nlm.nih.gov/gene/?term=YE0726
YE0727	YE0727	ligT	ligT	841669	842226	-	2'-5' RNA ligase		gene	gene726	http://www.ncbi.nlm.nih.gov/gene/?term=YE0727
YE0728	YE0728	hrpB	hrpB	842483	844789	+	ATP-dependent RNA helicase HrpB	similar in sequence to the ATP-dependent RNA helicase HrpA	gene	gene727	http://www.ncbi.nlm.nih.gov/gene/?term=YE0728
YE0729	YE0729	mrcB	mrcB	844897	847401	+	penicillin-binding protein 1b	bifunctional periplasmic enzyme%3B contains transglycosylase and transpeptidase activity%3B major enzyme for peptidoglycan biosynthesis in Escherichia coli%3B transmembrane protein%3B forms dimers%3B three variants%2C one of which may be a degradation product%2C while the other appears to result from an alternative initiation site%2C are found within the cell	gene	gene728	http://www.ncbi.nlm.nih.gov/gene/?term=YE0729
YE0730	YE0730	fhuC	fhuC	847658	848452	+	iron-hydroxamate transporter ATP-binding protein	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter	gene	gene729	http://www.ncbi.nlm.nih.gov/gene/?term=YE0730
YE0731	YE0731	fhuD	fhuD	848599	849381	+	iron-hydroxamate transporter substrate-binding protein	Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter%3B binds to all hydroxamate siderophores	gene	gene730	http://www.ncbi.nlm.nih.gov/gene/?term=YE0731
YE0732	YE0732	fhuB	fhuB	849378	851375	+	iron-hydroxamate transporter permease	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome	gene	gene731	http://www.ncbi.nlm.nih.gov/gene/?term=YE0732
YE0733	YE0733	nark	nark	851651	853042	-	nitrite extrusion protein	Similar to members of the major facilitator superfamily of transport proteins: Escherichia coli nitrite extrusion protein 1 Nark or b1223 SWALL:NARK_ECOLI (SWALL:P10903) (463 aa) fasta scores: E(): 9.4e-115%2C61.13 38d in 458 aa and Salmonella typhi nitrite extrusion protein Sty1287 SWALL:Q8Z7G0 (EMBL:AL627269) (465 aa) fasta scores: E(): 8.2e-115%2C 61.35 38d in 458 aa	gene	gene732	http://www.ncbi.nlm.nih.gov/gene/?term=YE0733
YE0734	YE0734	gsa	gsa	853456	854736	-	glutamate-1-semialdehyde aminotransferase	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway	gene	gene733	http://www.ncbi.nlm.nih.gov/gene/?term=YE0734
YE0735	YE0735	yadQ	yadQ	855003	856436	+	chloride channel protein	Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation	gene	gene734	http://www.ncbi.nlm.nih.gov/gene/?term=YE0735
YE0736	YE0736		YE0736	856554	856898	+	iron-sulfur cluster insertion protein ErpA	essential respiratory protein A%3B may be involved in the transfer of iron-sulfur clusters%3B essential for growth using oxygen or alternate electron acceptors	gene	gene735	http://www.ncbi.nlm.nih.gov/gene/?term=YE0736
YE0737	YE0737	yadS	yadS	857611	858222	-	hypothetical protein		gene	gene736	http://www.ncbi.nlm.nih.gov/gene/?term=YE0737
YE0738	YE0738	btuF	btuF	858222	859025	-	vitamin B12-transporter protein BtuF	solute binding component of the vitamin B12 transport system BtuCDF	gene	gene737	http://www.ncbi.nlm.nih.gov/gene/?term=YE0738
YE0739	YE0739	mtnN	mtnN	859085	859786	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine	gene	gene738	http://www.ncbi.nlm.nih.gov/gene/?term=YE0739
YE0740	YE0740	dgt	dgt	859995	861512	+	deoxyguanosinetriphosphate triphosphohydrolase	forms a homotetramer%3B requires magnesium for activity%3B catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate	gene	gene739	http://www.ncbi.nlm.nih.gov/gene/?term=YE0740
YE0741	YE0741	degP	degP	861811	863247	+	serine endoprotease	protease Do%3B required at high temperature%3B degrades damaged proteins	gene	gene740	http://www.ncbi.nlm.nih.gov/gene/?term=YE0741
YE0742	YE0742	barA	barA	863360	866194	-	hybrid sensory histidine kinase BarA	part of the two-component regulatory system with UvrY%3B involved in the regulation of carbon metabolism via the csrA/csrB regulatory system	gene	gene741	http://www.ncbi.nlm.nih.gov/gene/?term=YE0742
YE0743	YE0743	rumA	rumA	866251	867582	+	23S rRNA 5-methyluridine methyltransferase	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA%3B binds an iron-sulfur cluster [4Fe-4S]	gene	gene742	http://www.ncbi.nlm.nih.gov/gene/?term=YE0743
YE0744	YE0744	relA	relA	867592	869826	+	GDP/GTP pyrophosphokinase	(p)ppGpp synthetase%3B catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP	gene	gene743	http://www.ncbi.nlm.nih.gov/gene/?term=YE0744
YE0745	YE0745	mazG	mazG	870102	870944	+	nucleoside triphosphate pyrophosphohydrolase	functions in degradation of stringent response intracellular messenger ppGpp%3B in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF%3B activity of MazG is inhibited by MazEF in vitro%3B ppGpp inhibits mazEF expression%3B MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation%3B MazG also interacts with the GTPase protein Era	gene	gene744	http://www.ncbi.nlm.nih.gov/gene/?term=YE0745
YE0746	YE0746	pyrG	pyrG	871156	872793	+	CTP synthetase	CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer	gene	gene745	http://www.ncbi.nlm.nih.gov/gene/?term=YE0746
YE0747	YE0747	eno	eno	872873	874168	+	phosphopyruvate hydratase	enolase%3B catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis	gene	gene746	http://www.ncbi.nlm.nih.gov/gene/?term=YE0747
YE0748	YE0748		YE0748	874288	875292	+	transposase for insertion sequence element IS1328	Previously sequenced as Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 1.7e-131%2C 98.8 38d in 334 aa. Also similar to Shigella flexneri 2A IS1328 transposase SWALL:Q93EZ2 (EMBL:AF326777) (334 aa) fasta scores: E(): 8e-98%2C 73.78 id in 328 aa	gene	gene747	http://www.ncbi.nlm.nih.gov/gene/?term=YE0748
YE0749	YE0749		YE0749	875707	877783	+			gene	gene748	http://www.ncbi.nlm.nih.gov/gene/?term=YE0749
YE0752	YE0752	sodC	sodC	877988	878512	+	superoxide dismutase	Similar to many including: Salmonella typhimurium superoxide dismutase [cu-zn] 2 precursor SodC or Stm1440 SWALL:SODC_SALTY (SWALL:O68901) (177 aa) fasta scores: E(): 1.8e-45%2C 71.59 38d in 169 aa and to Brucella melitensis superoxide dismutase [cu-zn] precursor SodC or Bmeii0581 SWALL:SODC_BRUME (SWALL:P58645) (174 aa) fasta scores: E(): 4e-36%2C 57.47 38d in 174 aa	gene	gene749	http://www.ncbi.nlm.nih.gov/gene/?term=YE0752
YE0753	YE0753		YE0753	878616	879287	+	hypothetical protein		gene	gene750	http://www.ncbi.nlm.nih.gov/gene/?term=YE0753
YE0754	YE0754	ygcM	ygcM	879523	879882	-	6-pyruvoyl tetrahydrobiopterin synthase family protein		gene	gene751	http://www.ncbi.nlm.nih.gov/gene/?term=YE0754
YE0755	YE0755	cysJ	cysJ	880250	882055	+	sulfite reductase subunit alpha	catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate%3B a flavoprotein with flavin reductase activity	gene	gene752	http://www.ncbi.nlm.nih.gov/gene/?term=YE0755
YE0756	YE0756	cysI	cysI	882055	883785	+	sulfite reductase subunit beta	hemoprotein%3B NADPH dependent%3B with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide	gene	gene753	http://www.ncbi.nlm.nih.gov/gene/?term=YE0756
YE0757	YE0757	cysH	cysH	883782	884516	+	phosphoadenosine phosphosulfate reductase	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite	gene	gene754	http://www.ncbi.nlm.nih.gov/gene/?term=YE0757
YE0758	YE0758		YE0758	884629	885036	-	hypothetical protein		gene	gene755	http://www.ncbi.nlm.nih.gov/gene/?term=YE0758
YE0759	YE0759		YE0759	885164	885364	-	hypothetical protein	Similar to Rhizobium meliloti hypothetical protein R02039 or Smc04441 SWALL:Q92K60 (EMBL:AL591789) (62 aa) fasta scores: E(): 0.00019%2C 36.92 38d in 65 aa	gene	gene756	http://www.ncbi.nlm.nih.gov/gene/?term=YE0759
YE0760	YE0760		YE0760	885551	886585	-	alkaline phosphatase isozyme conversion aminopeptidase	catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3	gene	gene757	http://www.ncbi.nlm.nih.gov/gene/?term=YE0760
YE0761	YE0761	cysG	cysG	886878	888296	+	siroheme synthase		gene	gene758	http://www.ncbi.nlm.nih.gov/gene/?term=YE0761
YE0762	YE0762	cysD	cysD	888307	889215	+	sulfate adenylyltransferase subunit 2	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP	gene	gene759	http://www.ncbi.nlm.nih.gov/gene/?term=YE0762
YE0763	YE0763	cysN	cysN	889289	890725	+	sulfate adenylyltransferase subunit 1	may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step%3B forms a heterodimer with CysD%3B part of the GTP-binding elongation factor family CysN/NodQ	gene	gene760	http://www.ncbi.nlm.nih.gov/gene/?term=YE0763
YE0764	YE0764	cysC	cysC	890811	891377	+	adenylylsulfate kinase	converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis	gene	gene761	http://www.ncbi.nlm.nih.gov/gene/?term=YE0764
YE0766	YE0766	ygbE	ygbE	891572	891889	+	hypothetical protein		gene	gene762	http://www.ncbi.nlm.nih.gov/gene/?term=YE0766
YE0768	YE0768	ftsB	ftsB	892316	892639	+	cell division protein FtsB	forms a complex with FtsL and FtsQ%3B colocalizes to the septal region of the dividing cell%3B membrane protein	gene	gene763	http://www.ncbi.nlm.nih.gov/gene/?term=YE0768
YE0769	YE0769	ispD	ispD	892757	893401	+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	4-diphosphocytidyl-2C-methyl-D-erythritol synthase%3B MEP cytidylyltransferase%3B MCT%3B catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate%3B involved in isoprenoid and isopentenyl-PP biosynthesis%3B forms homodimers	gene	gene764	http://www.ncbi.nlm.nih.gov/gene/?term=YE0769
YE0770	YE0770	ispF	ispF	893416	893904	+	2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate	gene	gene765	http://www.ncbi.nlm.nih.gov/gene/?term=YE0770
YE0771	YE0771	truD	truD	893915	894964	+	tRNA pseudouridine synthase D	catalyzes the modification of U13 in tRNA(Glu)	gene	gene766	http://www.ncbi.nlm.nih.gov/gene/?term=YE0771
YE0772	YE0772	surE	surE	894942	895694	+	stationary phase survival protein SurE	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate	gene	gene767	http://www.ncbi.nlm.nih.gov/gene/?term=YE0772
YE0773	YE0773	pcm	pcm	895716	896342	+	protein-L-isoaspartate O-methyltransferase	catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins	gene	gene768	http://www.ncbi.nlm.nih.gov/gene/?term=YE0773
YE0774	YE0774	nlpD	nlpD	896518	897501	+	lipoprotein NlpD	outer membrane lipoprotein involved in stationary-phase cell survival%3B similar to LppB virulence determinant from Haemophilus somnus	gene	gene769	http://www.ncbi.nlm.nih.gov/gene/?term=YE0774
YE0775	YE0775	appR	appR	897556	898554	+	RNA polymerase sigma factor RpoS	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor controls a regulon of genes required for protection against external stresses	gene	gene770	http://www.ncbi.nlm.nih.gov/gene/?term=YE0775
YE0776	YE0776	fdv	fdv	898643	901198	-	DNA mismatch repair protein MutS	This protein performs the mismatch recognition step during the DNA repair process	gene	gene771	http://www.ncbi.nlm.nih.gov/gene/?term=YE0776
YE0777	YE0777		YE0777	901357	903021	-	inner membrane protein	Similar to Aeromonas hydrophila hypothetical protein SWALL:AAM22558 (EMBL:AF343089) (571 aa) fasta scores: E(): 7.3e-35%2C 30.51 38d in 544 aa and Vibrio cholerae hypothetical protein Vc0393 SWALL:Q9KUW6 (EMBL:AE004127) (597 aa) fasta scores: E(): 2e-18%2C 30.36 id in 573 aa	gene	gene772	http://www.ncbi.nlm.nih.gov/gene/?term=YE0777
YE0778	YE0778		YE0778	903126	903389	-	hypothetical protein	Note the differing N-terminus compared to the other Yersinia orthologues	gene	gene773	http://www.ncbi.nlm.nih.gov/gene/?term=YE0778
YE0779	YE0779	mrpA	mrpA	904320	904844	+	hypothetical protein		gene	gene774	http://www.ncbi.nlm.nih.gov/gene/?term=YE0779
YE0780	YE0780	mrfB	mrfB	904929	905474	+	minor pilin protein	Similar to Escherichia coli PRS fimbrial minor pilin protein precursor PrsH SWALL:PRSH_ECOLI (SWALL:P42185) (195 aa) fasta scores: E(): 8.7e-14%2C 35.94 id in 153 aa%2C and to Photorhabdus luminescens MrfB SWALL:Q93MT5 (EMBL:AF396083) (183 aa) fasta scores: E(): 8.8e-28%2C 45.35 38d in 183 aa	gene	gene775	http://www.ncbi.nlm.nih.gov/gene/?term=YE0780
YE0781	YE0781	mrfC	mrfC	905480	908041	+	fimbrial outer membrane usher protein		gene	gene776	http://www.ncbi.nlm.nih.gov/gene/?term=YE0781
YE0782	YE0782	mrfD	mrfD	908141	908908	+	pili chaperone protein	Similar to Photorhabdus luminescens mannose resistant fimbriae MrfD SWALL:Q93MT3 (EMBL:AF396083) (249 aa) fasta scores: E(): 1.3e-67%2C 69.91 38d in 246 aa%2C and to Escherichia coli chaperone protein PapD precursor papD SWALL:PAPD_ECOLI (SWALL:P15319) (239 aa) fasta scores: E(): 6.6e-42%2C 48.1 38d in 237 aa	gene	gene777	http://www.ncbi.nlm.nih.gov/gene/?term=YE0782
YE0783	YE0783	mrfF	mrfF	908962	909498	+	exported pilin protein	Similar to Photorhabdus luminescens mannose resistant fimbriae protein%2C MrfF SWALL:Q93MT1 (EMBL:AF396083) (188 aa) fasta scores: E(): 7.3e-25%2C 49 id in 151 aa%2C and to Proteus mirabilis MrpE protein SWALL:Q51906 (EMBL:Z32686) (181 aa) fasta scores: E(): 1.4e-17%2C 39.25 38d in 135 aa	gene	gene778	http://www.ncbi.nlm.nih.gov/gene/?term=YE0783
YE0784	YE0784	mrfG	mrfG	909498	909992	+	minor pili exported protein	Similar to Photorhabdus luminescens mannose resistant fimbriae protein MrfG SWALL:Q93MT0 (EMBL:AF396083) (163 aa) fasta scores: E(): 8e-25%2C 47.56 id in 164 aa%2C and to Salmonella typhimurium minor fimbrial subunit stff stff or stm0199 SWALL:O87661 (EMBL:AF093503) (158 aa) fasta scores: E(): 1.9e-24%2C 48.07 38d in 156 aa	gene	gene779	http://www.ncbi.nlm.nih.gov/gene/?term=YE0784
YE0785	YE0785	mrfH	mrfH	910002	910547	+	exported pilin protein	Similar to Photorhabdus luminescens mannose resistant fimbriae protein%2C MrfH SWALL:Q93MS9 (EMBL:AF396083) (181 aa) fasta scores: E(): 6.7e-29%2C50.84 38d in 177 aa%2C and to Serratia marcescens fimbria a protein precursor smfA SWALL:FMA_SERMA (SWALL:P13421) (174 aa) fasta scores: E(): 6.8e-10%2C 28.65 38d in 178 aa	gene	gene780	http://www.ncbi.nlm.nih.gov/gene/?term=YE0785
YE0786	YE0786	mrfJ	mrfJ	910632	911459	+	exported pilin protein	Similar to Photorhabdus luminescens mannose resistant fimbriae protein%2C MrfJ SWALL:Q93MS8 (EMBL:AF396083) (271 aa) fasta scores: E(): 1.7e-10%2C 27.3 id in 271 aa and Proteus mirabilis MrpH protein mrpH SWALL:Q9R6Q8 (EMBL:Z32686) (275 aa) fasta scores: E(): 2.2e-12%2C 26.43 38d in 261 aa	gene	gene781	http://www.ncbi.nlm.nih.gov/gene/?term=YE0786
YE0788	YE0788		YE0788	911785	911973	+	hypothetical protein	doubtful CDS with no significant database hits	gene	gene782	http://www.ncbi.nlm.nih.gov/gene/?term=YE0788
YE0789	YE0789		YE0789	912248	912874	+	thiol:disulfide interchange protein	Similar to Legionella pneumophila thiol:disulfide interchange protein DsbA precursor SWALL:DSBA_LEGPN (SWALL:P50024) (204 aa) fasta scores: E(): 1.6e-05%2C 21.07 id in 204 aa and Azotobacter vinelandii thiol:disulfide interchange protein DsbA precursor SWALL:DSBA_AZOVI (SWALL:Q44504) (214 aa) fasta scores: E(): 2.5e-05%2C 23.52 id in 136 aa	gene	gene783	http://www.ncbi.nlm.nih.gov/gene/?term=YE0789
YE0790	YE0790		YE0790	912874	913830	+	hypothetical protein	doubtful CDS with no significant database hits	gene	gene784	http://www.ncbi.nlm.nih.gov/gene/?term=YE0790
YE0791	YE0791		YE0791	913856	916006	+	ABC transporter ATP-binding protein	Similar to Escherichia coli MtfB SWALL:Q46973 (EMBL:U47048) (707 aa) fasta scores: E(): 6.5e-39%2C 27.75 id in 717 aa and to Xylella fastidiosa colicin v secretion ABC transporter ATP-binding protein xf1220 SWALL:Q9PE08 (EMBL:AE003955) (707 aa) fasta scores: E(): 9.5e-39%2C29.58 38d in 720 aa	gene	gene785	http://www.ncbi.nlm.nih.gov/gene/?term=YE0791
YE0792	YE0792		YE0792	916006	917181	+	type I secretion protein	Similar to many type I secretion proteins: Yersinia pestis putative HlyD family secretion protein Ypo2999 SWALL:Q8ZCI8 (EMBL:AJ414154) (401 aa) fasta scores: E(): 9.2e-43%2C 39.84 38d in 374 aa and to Agrobacterium tumefaciens efflux protein atu5177 or agr_pat_244 SWALL:Q8UKE5 (EMBL:AE008940) (397 aa) fasta scores: E(): 6.9e-37%2C 39.58 38d in 336 aa	gene	gene786	http://www.ncbi.nlm.nih.gov/gene/?term=YE0792
YE0793	YE0793		YE0793	917171	919147	+	ABC transporter ATP-binding protein	Similar to many ABC-family membrane transport proteins including: Escherichia coli macrolide-specific ABC-type efflux carrier MacB or b0879 SWALL:MACB_ECOLI (SWALL:P75831) (648 aa) fasta scores: E(): 4.3e-99%2C 47.61 id in 649 aa and to Agrobacterium tumefaciens ABC transporter%2C nucleotide binding/ATPase protein Atu5178 or agr_pat_247 SWALL:Q8UKE4 (EMBL:AE008940) (648 aa) fasta scores: E(): 7.1e-100%2C 48.53 38d in 647 aa	gene	gene787	http://www.ncbi.nlm.nih.gov/gene/?term=YE0793
YE0794	YE0794		YE0794	919144	920550	+	outer-membrane efflux lipoprotein	Similar to many putative lipoproteins including: Haemophilus influenzae hypothetical protein Hi1462 SWALL:YE62_HAEIN (SWALL:P45217) (454 aa) fasta scores: E(): 7.8e-34%2C 28.7 38d in 446 aa%2C Escherichia coli probable outer membrane lipoprotein CusC precursor or ibeb or b0572 SWALL:CUSC_ECOLI (SWALL:P77211) (457 aa) fasta scores: E(): 1.3e-31%2C 29.56 38d in 460 aa%2C and to Pseudomonas aeruginosa outer membrane protein OprJ precursor or pa4597 SWALL:OPRJ_PSEAE (SWALL:Q51397) (479 aa) fasta scores: E(): 1.7e-21%2C 25.47 38d in 475 aa	gene	gene788	http://www.ncbi.nlm.nih.gov/gene/?term=YE0794
YE0795	YE0795		YE0795	920547	921797	+	acyl-carrier-protein	Similar to many including: Synechocystis sp. 3-oxoacyl-[acyl-carrier-protein] synthase II FabF or sll1069 SWALL:FABF_SYNY3 (SWALL:P73283) (416 aa) fasta scores: E(): 5.9e-48%2C 36.53 38d in 416 aa%2C and to Anabaena sp. 3-oxoacyl-[acyl-carrier-protein] synthase beta chain Alr3343 SWALL:Q8YRV0 (EMBL:AP003592) (416 aa) fasta scores: E(): 6.7e-49%2C 36.53 38d in 416 aa	gene	gene789	http://www.ncbi.nlm.nih.gov/gene/?term=YE0795
YE0796	YE0796		YE0796	921908	922615	+	hypothetical protein	no significant database hits	gene	gene790	http://www.ncbi.nlm.nih.gov/gene/?term=YE0796
YE0797	YE0797		YE0797	922629	922877	+	hypothetical protein	Weakly similar to Streptomyces coelicolor putative acyl carrier protein Sco1267 or 2scg18.14C SWALL:Q9K3H3 (EMBL:AL390188) (85 aa) fasta scores: E(): 0.38%2C 29.11 38d in 79 aa	gene	gene791	http://www.ncbi.nlm.nih.gov/gene/?term=YE0797
YE0798	YE0798		YE0798	922897	923616	+	acyl-carrier-protein	Similar to to many including: Chlamydia pneumoniae 3-oxoacyl-[acyl-carrier protein] reductase FabG or cpn0296 or cp0462 SWALL:FABG_CHLPN (SWALL:Q9Z8P2) (248 aa) fasta scores: E(): 1.5e-28%2C 41 38d in 239 aa and to Streptomyces avermitilis 3-oxoacyl- SWALL:Q93HC0 (EMBL:AB070946) (313 aa) fasta scores: E(): 6.7e-29%2C 39.66 38d in 237 aa	gene	gene792	http://www.ncbi.nlm.nih.gov/gene/?term=YE0798
YE0799	YE0799		YE0799	923769	924335	-	aminotransferase	Similar to the phoshphate-binding C-termini domain of many proposed histidinol-phosphate aminotransferases including: Ralstonia solanacearum histidinol-phosphate aminotransferase 2 HisC2 or rsc0905 or rs04510 SWALL:Q8Y0Y8 (EMBL:AL646061) (374 aa) fasta scores: E(): 8.9e-14%2C 34.94 38d in 186 aa%2C and to Methylobacillus flagellatum histidinol-phosphate aminotransferase HisC or HisH SWALL:HIS8_METFL (SWALL:O07131) (368 aa) fasta scores: E(): 4.1e-11%2C 30.05 38d in 183 aa	gene	gene793	http://www.ncbi.nlm.nih.gov/gene/?term=YE0799
YE0800	YE0800	dsdA	dsdA	925174	926505	+	D-serine dehydratase	catalyzes the formation of pyruvate from serine	gene	gene794	http://www.ncbi.nlm.nih.gov/gene/?term=YE0800
YE0801	YE0801		YE0801	926771	927628	+	ABC transporter substrate-binding protein	Similar to Ralstonia solanacearum probable amino-acid-binding periplasmic Rsp1575 or rs02131 SWALL:Q8XPR3 (EMBL:AL646085) (283 aa) fasta scores: E(): 6.9e-26%2C 36.79 38d in 250 aa%2C and to Archaeoglobus fulgidus glutamine ABC transporter%2C periplasmic glutamine-binding protein Af0231 SWALL:O30008 (EMBL:AE001090) (264 aa) fasta scores: E(): 1.8e-15%2C28.88 38d in 277 aa	gene	gene795	http://www.ncbi.nlm.nih.gov/gene/?term=YE0801
YE0802	YE0802		YE0802	927640	928299	+	ABC transporter inner-membrane protein	Similar to Bacillus halodurans ABC transporter Bh1462 SWALL:Q9KCV7 (EMBL:AP001512) (218 aa) fasta scores: E(): 7.2e-24%2C 37.26 38d in 212 aa and to Deinococcus radiodurans amino acid ABC transporter%2C permease protein Dr1028 SWALL:Q9RVK0 (EMBL:AE001954) (216 aa) fasta scores: E(): 2.3e-23%2C 36.32 38d in 212 aa	gene	gene796	http://www.ncbi.nlm.nih.gov/gene/?term=YE0802
YE0803	YE0803		YE0803	928296	928934	+	ABC transporter inner-membrane protein	Similar to Bacillus subtilis probable amino-acid ABC transporter permease protein YckA SWALL:YCKA_BACSU (SWALL:P42399) (226 aa) fasta scores: E(): 5.6e-20%2C 35.46 id in 203 aa%2C and to Deinococcus radiodurans amino acid ABC transporter%2C permease protein Dr0565 SWALL:Q9RWV0 (EMBL:AE001914) (226 aa) fasta scores: E(): 1e-19%2C 38.16 id in 207 aa	gene	gene797	http://www.ncbi.nlm.nih.gov/gene/?term=YE0803
YE0804	YE0804		YE0804	928936	929751	+	ABC transporter ATP-binding protein	Similar to many including: Escherichia coli histidine transport ATP-binding protein HisP or b2306 SWALL:HISP_ECOLI (SWALL:P07109) (257 aa) fasta scores: E(): 3.8e-38%2C 52.24 38d in 245 aa%2C and to Streptomyces coelicolor ATP-binding protein Sco5258 or 2sc7g11.20C SWALL:Q9F3K7 (EMBL:AL391763) (253 aa) fasta scores: E(): 2.1e-40%2C 51.4 38d in 249 aa	gene	gene798	http://www.ncbi.nlm.nih.gov/gene/?term=YE0804
YE0805	YE0805		YE0805	929744	931027	+	amino acid hydrolase		gene	gene799	http://www.ncbi.nlm.nih.gov/gene/?term=YE0805
YE0806	YE0806		YE0806	931098	931694	+	hypothetical protein	Similar to Caulobacter crescentus hypothetical protein Cc1828 SWALL:Q9A798 (EMBL:AE005857) (208 aa) fasta scores: E(): 1.5e-14%2C 32.3 38d in 195 aa and Deinococcus radiodurans hypothetical protein Dr0613 SWALL:Q9RWQ3 (EMBL:AE001919) (216 aa) fasta scores: E(): 1.2e-12%2C31.66 38d in 180 aa	gene	gene800	http://www.ncbi.nlm.nih.gov/gene/?term=YE0806
YE0807	YE0807		YE0807	931780	932370	+	transcriptional regulatory protein	Similar to Rhizobium loti hypothetical protein Mll7669 SWALL:Q985H7 (EMBL:AP003012) (205 aa) fasta scores: E(): 1.2e-26%2C 47.44 38d in 196 aa and to Rhizobium loti transcriptional regulator mlr7385 SWALL:Q986F2 (EMBL:AP003011) (227 aa) fasta scores: E(): 2.2e-11%2C34.44 38d in 180 aa	gene	gene801	http://www.ncbi.nlm.nih.gov/gene/?term=YE0807
YE0808	YE0808	fusA	fusA	932613	934721	-	elongation factor G	Similar to Yersinia pestis elongation factor G fusA or Ypo0202 SWALL:EFG_YERPE (SWALL:Q8ZJB3) (702 aa) fasta scores: E(): 3.1e-178%2C 67.37 38d in 702 aa%2C and to Ralstonia solanacearum elongation factor g 1 fusa or rsc3022 or rs04735 SWALL:EFG1_RALSO (SWALL:Q8XV10) (703 aa) fasta scores: E(): 9.7e-203%2C 76.24 38d in 703 aa	gene	gene802	http://www.ncbi.nlm.nih.gov/gene/?term=YE0808
YE0809	YE0809		YE0809	935067	935414	+	ArsR family transcriptional regulator	Similar to many putative regulators including: Anabaena sp. transcriptional regulator Alr1867 SWALL:Q8YVV6 (EMBL:AP003587) (112 aa) fasta scores: E(): 6.3e-15%2C 44.66 38d in 103 aa%2C and to Rhizobium meliloti regulator nitr SWALL:Q9AH16 (EMBL:AF323118) (123 aa) fasta scores: E(): 5.5e-12%2C 45.45 38d in 99 aa	gene	gene803	http://www.ncbi.nlm.nih.gov/gene/?term=YE0809
YE0810	YE0810	sorE	sorE	935455	936705	-	L-sorbose 1-phosphate reductase	Similar to Klebsiella pneumoniae L-sorbose 1-phosphate reductase SorE SWALL:SORE_KLEPN (SWALL:P37084) (410 aa) fasta scores: E(): 1.3e-116%2C 71.98 38d in 414 aa and to Escherichia coli O157:H7 putative L-sorbose-1-p-reductase Z5613 or ecs4941 SWALL:Q8X5Z6 (EMBL:AE005634) (413 aa) fasta scores: E(): 8.5e-122%2C 75 id in 416 aa	gene	gene804	http://www.ncbi.nlm.nih.gov/gene/?term=YE0810
YE0811	YE0811	sorM	sorM	936793	937623	-	PTS system sorbose-specific transporter	Similar to Klebsiella pneumoniae PTS system%2Csorbose-specific IId component SorM SWALL:PTRD_KLEPN (SWALL:P37083) (274 aa) fasta scores: E(): 1.2e-89%2C 83.02 id in 271 aa%2C and to Escherichia coli O157:H7 putative sorbose PTS component z5614 SWALL:Q8X3K0 (EMBL:AE005634) (274 aa) fasta scores: E(): 1.2e-89%2C 83.02 38d in 271 aa	gene	gene805	http://www.ncbi.nlm.nih.gov/gene/?term=YE0811
YE0812	YE0812	sorA	sorA	937635	938462	-	PTS system sorbose-specific transporter	Similar to Klebsiella pneumoniae PTS system%2Csorbose-specific IIc component SorA SWALL:PTRC_KLEPN (SWALL:P37082) (266 aa) fasta scores: E(): 1.2e-73%2C 80.15 id in 267 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 PTS system%2C mannose-specific IIc component or PtsP or pel or b1818 or z2861 or ecs2528 SWALL:PTNC_ECOLI (SWALL:P08187) (266 aa) fasta scores: E(): 5.8e-61%2C 63.91 id in 266 aa	gene	gene806	http://www.ncbi.nlm.nih.gov/gene/?term=YE0812
YE0813	YE0813	sorB	sorB	938574	939065	-	PTS system sorbose-specific transporter	Similar to Klebsiella pneumoniae PTS system%2CSorBose-specific IIb component SorB SWALL:PTRB_KLEPN (SWALL:P37081) (164 aa) fasta scores: E(): 1.4e-40%2C 68.55 id in 159 aa%2C and to Escherichia coli O157:H7 putative sorbose PTS component z5616 or ecs5001 SWALL:Q8X5Z4 (EMBL:AE005634) (164 aa) fasta scores: E(): 4.9e-41%2C69.81 38d in 159 aa	gene	gene807	http://www.ncbi.nlm.nih.gov/gene/?term=YE0813
YE0814	YE0814	sorF	sorF	939062	939484	-	PTS system sorbose-specific transporter	Similar to Klebsiella pneumoniae PTS system%2Csorbose-specific IIa component SorF SWALL:PTRA_KLEPN (SWALL:P37080) (135 aa) fasta scores: E(): 9.9e-21%2C 48.88 id in 135 aa%2C and to Escherichia coli O157:H7 putative sorbose PTS component z5617 or ecs5002 SWALL:Q8X5Z3 (EMBL:AE005634) (135 aa) fasta scores: E(): 3.4e-21%2C51.11 38d in 135 aa	gene	gene808	http://www.ncbi.nlm.nih.gov/gene/?term=YE0814
YE0815	YE0815		YE0815	939583	940542	-	transcriptional regulatory protein		gene	gene809	http://www.ncbi.nlm.nih.gov/gene/?term=YE0815
YE0816	YE0816	fumA	fumA	940906	942549	-	fumarate hydratase%2C class I		gene	gene810	http://www.ncbi.nlm.nih.gov/gene/?term=YE0816
YE0818	YE0818		YE0818	943453	944427	+	sugar ABC transporter substrate-binding protein		gene	gene811	http://www.ncbi.nlm.nih.gov/gene/?term=YE0818
YE0819	YE0819		YE0819	944506	945120	+	lipoprotein		gene	gene812	http://www.ncbi.nlm.nih.gov/gene/?term=YE0819
YE0820	YE0820		YE0820	945120	946643	+	sugar ABC transporter ATP-binding protein		gene	gene813	http://www.ncbi.nlm.nih.gov/gene/?term=YE0820
YE0821	YE0821	rbsC	rbsC	946640	947758	+	sugar ABC transporter permease		gene	gene814	http://www.ncbi.nlm.nih.gov/gene/?term=YE0821
YE0822	YE0822		YE0822	948034	948864	+	N-terminal region of transketolase		gene	gene815	http://www.ncbi.nlm.nih.gov/gene/?term=YE0822
YE0823	YE0823		YE0823	948857	949801	+	C-terminal region of transketolase		gene	gene816	http://www.ncbi.nlm.nih.gov/gene/?term=YE0823
YE0824	YE0824		YE0824	949804	951291	+	glycerol kinase		gene	gene817	http://www.ncbi.nlm.nih.gov/gene/?term=YE0824
YE0825	YE0825		YE0825	951312	952733	+	hypothetical protein		gene	gene818	http://www.ncbi.nlm.nih.gov/gene/?term=YE0825
YE0826	YE0826		YE0826	952829	953773	-	transcriptional regulatory protein		gene	gene819	http://www.ncbi.nlm.nih.gov/gene/?term=YE0826
YE0827	YE0827		YE0827	953931	955259	-	hypothetical protein		gene	gene820	http://www.ncbi.nlm.nih.gov/gene/?term=YE0827
YE0828	YE0828		YE0828	955495	955983	+	competence damage-inducible protein A		gene	gene821	http://www.ncbi.nlm.nih.gov/gene/?term=YE0828
YE0829	YE0829	recA	recA	956095	957159	+	recombinase A	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA%2C the ATP-dependent uptake of single-stranded DNA by duplex DNA%2C and the ATP-dependent hybridization of homologous single-stranded DNAs	gene	gene822	http://www.ncbi.nlm.nih.gov/gene/?term=YE0829
YE0831	YE0831	tnpA	tnpA	957461	957793	+	IS1329 transposase A	Previously sequenced as Yersinia enterocolitica IS1329 transposase A Trp1329A SWALL:Q9X9I2 (EMBL:AJ132945) (110 aa) fasta scores: E(): 1.8e-38%2C 100 38d in 110 aa. Also similar to Shigella dysenteriae transposase InsN for insertion sequence element IS911 SWALL:INSN_SHIDY (SWALL:P39213) (112 aa) fasta scores: E(): 7.6e-13%2C 42.45 id in 106 aa	gene	gene823	http://www.ncbi.nlm.nih.gov/gene/?term=YE0831
YE0832	YE0832	tnpB	tnpB	957883	958632	+	IS1329 transposase B	Previously sequenced as Yersinia enterocolitica transposase B TnpB SWALL:Q9RIG3 (EMBL:AJ251581) (249 aa) fasta scores: E(): 2.3e-104%2C 99.59 38d in 249 aa. Also similar to Xanthomonas axonopodis pv. citri str. 306 ISxac3 transposase Xac0342 SWALL:AAM35234 (EMBL:AE011660) (272 aa) fasta scores: E(): 8e-37%2C 43.72 38d in 247 aa	gene	gene824	http://www.ncbi.nlm.nih.gov/gene/?term=YE0832
YE0833	YE0833	recX	recX	958842	959345	+	recombination regulator RecX	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities	gene	gene825	http://www.ncbi.nlm.nih.gov/gene/?term=YE0833
YE0834	YE0834	alaS	alaS	959487	962114	+	alanyl-tRNA synthetase	Catalyzes a two-step reaction%2C first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA	gene	gene826	http://www.ncbi.nlm.nih.gov/gene/?term=YE0834
YE0835	YE0835	csrA	csrA	962368	962553	+	carbon storage regulator	affects carbohydrate metabolism%3B has regulatory role in many processes	gene	gene827	http://www.ncbi.nlm.nih.gov/gene/?term=YE0835
YE0836	YE0836	yqaB	yqaB	963796	964362	+	fructose-1-phosphatase	YqaB%3B catalyzes the dephosphorylation of fructose 1-phosphate%2C 6-phosphogluconate and p-nitrophenyl phosphate (pNPP)%3B presents beta-phosphoglucomutase activity at a lower extent	gene	gene831	http://www.ncbi.nlm.nih.gov/gene/?term=YE0836
YE0837	YE0837	yqaA	yqaA	964359	964787	+	hypothetical protein		gene	gene832	http://www.ncbi.nlm.nih.gov/gene/?term=YE0837
YE0838	YE0838	b2688	b2688	964870	966429	+	glutamate--cysteine ligase	involved in the first step of glutathione biosynthesis	gene	gene833	http://www.ncbi.nlm.nih.gov/gene/?term=YE0838
YE0839	YE0839	luxS	luxS	966596	967111	+	S-ribosylhomocysteinase	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2	gene	gene835	http://www.ncbi.nlm.nih.gov/gene/?term=YE0839
YE0840	YE0840	b2612/b2613	b2612/b2613	967198	968478	-	hypothetical protein		gene	gene836	http://www.ncbi.nlm.nih.gov/gene/?term=YE0840
YE0841	YE0841	corE	corE	968548	969339	-	hypothetical protein		gene	gene837	http://www.ncbi.nlm.nih.gov/gene/?term=YE0841
YE0842	YE0842	ffh	ffh	969505	970866	+	signal recognition particle protein	with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins	gene	gene838	http://www.ncbi.nlm.nih.gov/gene/?term=YE0842
YE0843	YE0843	rpsP	rpsP	971219	971467	+	30S ribosomal protein S16	binds to lower part of 30S body where it stabilizes two domains%3B required for efficient assembly of 30S%3B in Escherichia coli this protein has nuclease activity	gene	gene839	http://www.ncbi.nlm.nih.gov/gene/?term=YE0843
YE0844	YE0844	rimM	rimM	971489	972037	+	16S rRNA-processing protein RimM	Essential for efficient processing of 16S rRNA	gene	gene840	http://www.ncbi.nlm.nih.gov/gene/?term=YE0844
YE0845	YE0845	trmD	trmD	972076	972816	+	tRNA (guanine-N(1)-)-methyltransferase	methylates guanosine-37 in various tRNAs%3B uses S-adenosyl-L-methionine to transfer methyl group to tRNA	gene	gene841	http://www.ncbi.nlm.nih.gov/gene/?term=YE0845
YE0846	YE0846	rplS	rplS	972897	973259	+	50S ribosomal protein L19	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site	gene	gene842	http://www.ncbi.nlm.nih.gov/gene/?term=YE0846
YE0847	YE0847	ydiY	ydiY	973467	974234	-	hypothetical protein		gene	gene843	http://www.ncbi.nlm.nih.gov/gene/?term=YE0847
YE0848	YE0848		YE0848	974471	975814	-	anaerobic C4-dicarboxylate transporter	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate%3B similar to DcuA%3B DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate%2C malate%2C fumarate and succinate) transporters	gene	gene844	http://www.ncbi.nlm.nih.gov/gene/?term=YE0848
YE0849	YE0849		YE0849	976157	976873	-	two-component response-regulatory protein YehT	unknown function%3B when overproduced it confers drug-resistance	gene	gene845	http://www.ncbi.nlm.nih.gov/gene/?term=YE0849
YE0850	YE0850	aroF	aroF	977108	978187	+	phospho-2-dehydro-3-deoxyheptonate aldolase	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C tyrosine sensitive	gene	gene846	http://www.ncbi.nlm.nih.gov/gene/?term=YE0850
YE0851	YE0851	tyrA	tyrA	978190	979311	+	bifunctional chorismate mutase/prephenate dehydrogenase	catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis	gene	gene847	http://www.ncbi.nlm.nih.gov/gene/?term=YE0851
YE0852	YE0852	pheA	pheA	979671	980828	-	bifunctional chorismate mutase/prephenate dehydratase	catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis	gene	gene848	http://www.ncbi.nlm.nih.gov/gene/?term=YE0852
YE0853	YE0853	int	int	981320	982318	-	integrase	Similar to Bacteriophage P2 Integrase Int SWALL:VINT_BPP2 (SWALL:P36932) (337 aa) fasta scores: E(): 8.2e-72%2C 54.62 38d in 335 aa and to Bacteriophage 186 Integrase Int SWALL:VINT_BP186 (SWALL:P06723) (336 aa) fasta scores: E(): 1.9e-32%2C 38.57 38d in 337 aa	gene	gene849	http://www.ncbi.nlm.nih.gov/gene/?term=YE0853
YE0854	YE0854	CI	CI	982385	982684	-	bacteriophage CI repressor protein	Similar to Bacteriophage P2 repressor protein repressor C SWALL:RPC_BPP2 (SWALL:P04132) (99 aa) fasta scores: E(): 3.5e-12%2C 42.42 38d in 99 aa and to Bacteriophage WPhi repressor protein C SWALL:Q9T1J6 (EMBL:AJ245959) (97 aa) fasta scores: E(): 2.2e-09%2C 43.01 id in 93 aa	gene	gene850	http://www.ncbi.nlm.nih.gov/gene/?term=YE0854
YE0855	YE0855	cox	cox	982793	983149	+	bacteriophage regulatory protein	Similar to Bacteriophage P2 regulatory protein Cox SWALL:VCOX_BPP2 (SWALL:P07695) (91 aa) fasta scores: E(): 0.0021%2C 32.14 38d in 84 aa	gene	gene851	http://www.ncbi.nlm.nih.gov/gene/?term=YE0855
YE0856	YE0856		YE0856	983146	983388	+	phage-like protein	no significant database hits	gene	gene852	http://www.ncbi.nlm.nih.gov/gene/?term=YE0856
YE0857	YE0857		YE0857	983455	983820	+	phage-like protein	no significant database hits	gene	gene853	http://www.ncbi.nlm.nih.gov/gene/?term=YE0857
YE0857A	YE0857A		YE0857A	983849	984070	+	phage-like protein		gene	gene854	http://www.ncbi.nlm.nih.gov/gene/?term=YE0857A
YE0858	YE0858		YE0858	984079	984429	+	phage-like protein	Weakly similar to Salmonella typhi hypothetical protein Sty3664 SWALL:Q8Z369 (EMBL:AL627279) (113 aa) fasta scores: E(): 1.7e-06%2C 32.72 38d in 110 aa	gene	gene855	http://www.ncbi.nlm.nih.gov/gene/?term=YE0858
YE0859	YE0859		YE0859	984491	984736	+	phage-like protein	no significant database hits	gene	gene856	http://www.ncbi.nlm.nih.gov/gene/?term=YE0859
YE0860	YE0860		YE0860	984736	985404	+	exported phage-related protein	no significant database hits	gene	gene857	http://www.ncbi.nlm.nih.gov/gene/?term=YE0860
YE0860A	YE0860A		YE0860A	985388	985768	+	phage-like protein	no significant database hits	gene	gene858	http://www.ncbi.nlm.nih.gov/gene/?term=YE0860A
YE0861	YE0861	gpA	gpA	985765	988350	+	phage replication protein	Similar to Salmonella typhi possible endonuclease Sty3668 SWALL:Q8Z365 (EMBL:AL627279) (804 aa) fasta scores: E(): 1.6e-90%2C 43.34 38d in 819 aa	gene	gene859	http://www.ncbi.nlm.nih.gov/gene/?term=YE0861
YE0862	YE0862		YE0862	988354	988602	+	phage-like protein	no significant database hits	gene	gene860	http://www.ncbi.nlm.nih.gov/gene/?term=YE0862
YE0863	YE0863		YE0863	988741	989850	+	phage-like membrane protein	no significant database hits	gene	gene861	http://www.ncbi.nlm.nih.gov/gene/?term=YE0863
YE0864	YE0864		YE0864	989892	990536	+	phage-like membrane protein	no significant database hits	gene	gene862	http://www.ncbi.nlm.nih.gov/gene/?term=YE0864
YE0865	YE0865		YE0865	990587	990916	-	phage-like protein	no significant database hits	gene	gene863	http://www.ncbi.nlm.nih.gov/gene/?term=YE0865
YE0866	YE0866	gpQ	gpQ	990920	992017	-	portal vertex protein	Similar to Bacteriophage P2 presumed portal vertex protein Q SWALL:VPQ_BPP2 (SWALL:P25480) (344 aa) fasta scores: E(): 1.5e-27%2C 32.08 38d in 321 aa and Bacteriophage HP1 probable portal protein SWALL:VPQ_BPHP1 (SWALL:P51717) (345 aa) fasta scores: E(): 2.5e-62%2C 52.26 id in 331 aa	gene	gene864	http://www.ncbi.nlm.nih.gov/gene/?term=YE0866
YE0867	YE0867	gpP	gpP	991698	993875	-	terminase ATPase subunit	Similar to Bacteriophage P2 terminase%2C ATPase subunit P SWALL:VPP_BPP2 (SWALL:P25479) (590 aa) fasta scores: E(): 5.1e-75%2C 39.18 38d in 592 aa and to Bacteriophage HP1 probable terminase%2C ATPase subunit SWALL:VPP_BPHP1 (SWALL:P51718) (607 aa) fasta scores: E(): 1.5e-90%2C 45.82 38d in 611 aa. Note the extended lenght of the product of this CDS and the resultant overlap with the downstream CDS	gene	gene865	http://www.ncbi.nlm.nih.gov/gene/?term=YE0867
YE0868	YE0868	gpO	gpO	994053	995009	+	capsid scaffolding protein	Similar to Bacteriophage HP1 probable capsid scaffolding protein SWALL:VPO_BPHP1 (SWALL:P51719) (298 aa) fasta scores: E(): 1.4e-21%2C 37.18 38d in 320 aa%2C and to Bacteriophage P2 presumed capsid scaffolding protein O SWALL:VPO_BPP2 (SWALL:P25478) (284 aa) fasta scores: E(): 8.2e-05%2C 32.52 38d in 289 aa	gene	gene866	http://www.ncbi.nlm.nih.gov/gene/?term=YE0868
YE0869	YE0869	gpN	gpN	995092	996258	+	major capsid protein	Similar to Bacteriophage P2 major capsid protein precursor N SWALL:VPN_BPP2 (SWALL:P25477) (357 aa) fasta scores: E(): 0.0021%2C 23.82 38d in 319 aa%2C and to Bacteriophage HP1 major capsid protein precursor SWALL:VPN_BPHP1 (SWALL:P51720) (336 aa) fasta scores: E(): 6.8e-06%2C 28.35 38d in 328 aa	gene	gene867	http://www.ncbi.nlm.nih.gov/gene/?term=YE0869
YE0870	YE0870	gpM	gpM	996273	996926	+	terminase endonuclease subunit	Similar to Bacteriophage HP1 probable terminase%2Cendonuclease subunit SWALL:VPM_BPHP1 (SWALL:P51721) (281 aa) fasta scores: E(): 3.1e-11%2C 32.48 38d in 237 aa%2C and to Bacteriophage P2 terminase%2C endonuclease subunit M SWALL:VPM_BPP2 (SWALL:P25476) (247 aa) fasta scores: E(): 0.0042%2C 28.31 38d in 226 aa	gene	gene868	http://www.ncbi.nlm.nih.gov/gene/?term=YE0870
YE0871	YE0871	gpL	gpL	997060	997512	+	head completion/stabilization protein	Similar to Bacteriophage P2 head completion/stabilization protein L SWALL:VPL_BPP2 (SWALL:P25475) (169 aa) fasta scores: E(): 0.03%2C 22.14 38d in 149 aa%2C Bacteriophage SWALL:Q8W748 (EMBL:AF125163) (153 aa) fasta scores: E(): 9.3e-18%2C 35.29 38d in 153 aa%2Cand to Bacteriophage HP1 probable head completion/stabilization protein SWALL:VPL_BPHP1 (SWALL:P51722) (150 aa) fasta scores: E(): 7.6e-15%2C 35.33 id in 150 aa	gene	gene869	http://www.ncbi.nlm.nih.gov/gene/?term=YE0871
YE0871A	YE0871A		YE0871A	997509	998045	+	phage-like protein	no significant database hits	gene	gene870	http://www.ncbi.nlm.nih.gov/gene/?term=YE0871A
YE0872	YE0872		YE0872	998035	998730	+	phage-like protein	Similar to Bacteriophage HP1 hypothetical protein SWALL:YO22_BPHP1 (SWALL:P51724) (227 aa) fasta scores: E(): 3.8e-09%2C 29.95 38d in 227 aa%2C and to Haemophilus phage HP2 Orf22 SWALL:Q94MZ0 (EMBL:AY027935) (231 aa) fasta scores: E(): 8.3e-06%2C 29.03 38d in 217 aa	gene	gene871	http://www.ncbi.nlm.nih.gov/gene/?term=YE0872
YE0873	YE0873		YE0873	998727	999905	+	tail sheath protein	Similar to Bacteriophage HP1 putative tail sheath protein SWALL:YO23_BPHP1 (SWALL:P51725) (376 aa) fasta scores: E(): 7.1e-48%2C 48.95 38d in 384 aa and to Haemophilus phage HP2 Orf23 SWALL:Q94MY9 (EMBL:AY027935) (376 aa) fasta scores: E(): 2.6e-48%2C 48.95 38d in 384 aa	gene	gene872	http://www.ncbi.nlm.nih.gov/gene/?term=YE0873
YE0874	YE0874		YE0874	999907	1000365	+	tail tube protein	Similar to Bacteriophage HP1 putative tail tube protein SWALL:YO24_BPHP1 (SWALL:P51726) (150 aa) fasta scores: E(): 8.9e-29%2C 54.05 38d in 148 aa%2C and to Haemophilus phage HP2 Orf24 SWALL:Q94MY8 (EMBL:AY027935) (144 aa) fasta scores: E(): 1.4e-27%2C 53.84 38d in 143 aa	gene	gene873	http://www.ncbi.nlm.nih.gov/gene/?term=YE0874
YE0875	YE0875		YE0875	1000369	1000689	+	phage holin	Similar to Bacteriophage P2 holin SWALL:HOLI_BPP2 (SWALL:P51773) (93 aa) fasta scores: E(): 3.3e-09%2C 46.06 id in 89 aa%2C and to Bacteriophage 186 Orf24 SWALL:O80308 (EMBL:U32222) (98 aa) fasta scores: E(): 2.1e-08%2C 43.82 id in 89 aa	gene	gene874	http://www.ncbi.nlm.nih.gov/gene/?term=YE0875
YE0876	YE0876		YE0876	1000686	1001027	+	phage-like protein	no significant database hits	gene	gene875	http://www.ncbi.nlm.nih.gov/gene/?term=YE0876
YE0877	YE0877		YE0877	1001027	1001398	+	phage-like protein		gene	gene876	http://www.ncbi.nlm.nih.gov/gene/?term=YE0877
YE0878	YE0878		YE0878	1001513	1001788	+	phage-like protein	Similar to Haemophilus influenzae phage HP2 Orf26 SWALL:AAK37810 (EMBL:AY027935) (102 aa) fasta scores: E(): 1.2e-06%2C 32.22 38d in 90 aa	gene	gene877	http://www.ncbi.nlm.nih.gov/gene/?term=YE0878
YE0879	YE0879		YE0879	1001985	1004042	+	phage-like protein	Similar to Bacteriophage HP1 hypothetical protein SWALL:YO27_BPHP1 (SWALL:P51731) (689 aa) fasta scores: E(): 6.1e-45%2C 30.47 38d in 712 aa and to Haemophilus phage HP2 Orf27 SWALL:Q94MY4 (EMBL:AY027935) (709 aa) fasta scores: E(): 1.2e-40%2C 28.88 38d in 741 aa	gene	gene878	http://www.ncbi.nlm.nih.gov/gene/?term=YE0879
YE0880	YE0880		YE0880	1004039	1004365	+	phage-like protein	Similar to Bacteriophage HP1 hypothetical protein SWALL:YO28_BPHP1 (SWALL:P51732) (111 aa) fasta scores: E(): 7e-23%2C 63.36 38d in 101 aa and to Haemophilus phage HP2 Orf28 SWALL:Q94MY3 (EMBL:AY027935) (111 aa) fasta scores: E(): 1.9e-22%2C 62.37 38d in 101 aa	gene	gene879	http://www.ncbi.nlm.nih.gov/gene/?term=YE0880
YE0881	YE0881		YE0881	1004365	1005549	+	phage-like protein	Similar to Haemophilus phage HP2 Orf29 SWALL:Q94MY2 (EMBL:AY027935) (382 aa) fasta scores: E(): 9.8e-76%2C50.67 38d in 373 aa and to Bacteriophage HP1 hypothetical protein SWALL:YO29_BPHP1 (SWALL:P51733) (393 aa) fasta scores: E(): 1.2e-67%2C 49.7 38d in 340 aa	gene	gene880	http://www.ncbi.nlm.nih.gov/gene/?term=YE0881
YE0882	YE0882		YE0882	1005542	1006165	+	phage-like protein	Similar to Bacteriophage HP1 hypothetical protein SWALL:YO30_BPHP1 (SWALL:P51734) (174 aa) fasta scores: E(): 2e-33%2C 50.86 38d in 173 aa and to Bacteriophage K139 Orf34 SWALL:Q8W734 (EMBL:AF125163) (219 aa) fasta scores: E(): 7.5e-31%2C 41.7 38d in 211 aa	gene	gene881	http://www.ncbi.nlm.nih.gov/gene/?term=YE0882
YE0883	YE0883		YE0883	1006175	1007719	+	tail fiber protein	Similar in the conserved N-terminal proteion of the predicted product to Bacteriophage HP1 probable tail fiber protein SWALL:VPH_BPHP1 (SWALL:P51735) (925 aa) fasta scores: E(): 6.3e-39%2C 41.4 38d in 355 aa and to Haemophilus phage HP2 Orf31 SWALL:Q94MY0 (EMBL:AY027935) (910 aa) fasta scores: E(): 3.9e-38%2C 40.17 38d in 351 aa	gene	gene882	http://www.ncbi.nlm.nih.gov/gene/?term=YE0883
YE0884	YE0884		YE0884	1007719	1008357	+	tail fiber assembly protein	Similar to Escherichia coli tail fiber assembly protein from lambdoid prophage E14 SWALL:TFAE_ECOLI (SWALL:P09153) (200 aa) fasta scores: E(): 3.7e-17%2C 39.58 id in 192 aa and to Bacteriophage HK97 Gp29 SWALL:Q9MCR5 (EMBL:AF069529) (202 aa) fasta scores: E(): 2.6e-18%2C38.07 38d in 197 aa	gene	gene883	http://www.ncbi.nlm.nih.gov/gene/?term=YE0884
YE0885	YE0885		YE0885	1008347	1009054	+	phage-like protein	Similar to Haemophilus phage HP2 Orf33 SWALL:Q94MX8 (EMBL:AY027935) (255 aa) fasta scores: E(): 7.3e-13%2C28.46 38d in 260 aa and to Bacteriophage HP1 hypothetical protein SWALL:YO33_BPHP1 (SWALL:P51737) (258 aa) fasta scores: E(): 6.9e-12%2C 27.9 38d in 258 aa	gene	gene884	http://www.ncbi.nlm.nih.gov/gene/?term=YE0885
YE0886	YE0886		YE0886	1009056	1009601	+	phage-like protein	Similar to Haemophilus phage HP2 Orf34 SWALL:Q94MX7 (EMBL:AY027935) (186 aa) fasta scores: E(): 1.5e-20%2C40.78 38d in 179 aa and to Bacteriophage HP1 hypothetical protein SWALL:YO34_BPHP1 (SWALL:P51738) (187 aa) fasta scores: E(): 2.7e-20%2C 39.34 38d in 183 aa	gene	gene885	http://www.ncbi.nlm.nih.gov/gene/?term=YE0886
YE0887	YE0887		YE0887	1009598	1011295	+	phage-like protein	Similar to Haemophilus phage HP2 Orf35 SWALL:Q94MX6 (EMBL:AY027935) (533 aa) fasta scores: E(): 7e-71%2C 40.7 id in 565 aa%2C and to Bacteriophage HP1 hypothetical protein SWALL:YO35_BPHP1 (SWALL:P51739) (533 aa) fasta scores: E(): 1.7e-69%2C 39.64 38d in 565 aa	gene	gene886	http://www.ncbi.nlm.nih.gov/gene/?term=YE0887
YE0888	YE0888		YE0888	1011378	1011797	+	phage-like membrane protein	no significant database hits	gene	gene887	http://www.ncbi.nlm.nih.gov/gene/?term=YE0888
YE0889	YE0889	yfiA	yfiA	1012660	1013022	-	sigma 54 modulation protein		gene	gene888	http://www.ncbi.nlm.nih.gov/gene/?term=YE0889
YE0890	YE0890	yfiO	yfiO	1013390	1014121	-	outer membrane protein assembly complex subunit YfiO	with YaeT%2C NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane%3B involved in resistance to ampicillin and tetracycline	gene	gene889	http://www.ncbi.nlm.nih.gov/gene/?term=YE0890
YE0891	YE0891	rluD	rluD	1014257	1015234	+	23S rRNA pseudouridine synthase D	responsible for synthesis of pseudouridine from uracil at positions 1911%2C 1915 and 1917 in 23S ribosomal RNA	gene	gene890	http://www.ncbi.nlm.nih.gov/gene/?term=YE0891
YE0892	YE0892		YE0892	1015234	1015965	+	hypothetical protein		gene	gene891	http://www.ncbi.nlm.nih.gov/gene/?term=YE0892
YE0893	YE0893	clpB	clpB	1016096	1018669	+	protein disaggregation chaperone		gene	gene892	http://www.ncbi.nlm.nih.gov/gene/?term=YE0893
YE0894	YE0894		YE0894	1025066	1026175	-	O-methyltransferase	Similar to many proposed O-methylatransferases including: Streptomyces peucetius carminomycin 4-O-methyltransferase DnrK SWALL:CM4T_STRPE (SWALL:Q06528) (355 aa) fasta scores: E(): 6.5e-07%2C 25.29 38d in 340 aa and to Escherichia coli O157:H7 putative O-methyltransferase Z4850 SWALL:Q8X3M8 (EMBL:AE005571) (352 aa) fasta scores: E(): 4.2e-94%2C 63.81 38d in 351 aa	gene	gene898	http://www.ncbi.nlm.nih.gov/gene/?term=YE0894
YE0895	YE0895		YE0895	1026234	1026620	-	lipoprotein	Similar to Escherichia coli O157:H7 hypothetical protein Z4849 or Ecs4324 SWALL:Q8X6P0 (EMBL:AE005571) (129 aa) fasta scores: E(): 6.5e-18%2C 45.29 38d in 117 aa	gene	gene899	http://www.ncbi.nlm.nih.gov/gene/?term=YE0895
YE0896	YE0896		YE0896	1027008	1027724	+	hypothetical protein	Similar to Escherichia coli O157:H7 hypothetical protein z4851 or ecs4326 SWALL:Q8X6N8 (EMBL:AE005571) (240 aa) fasta scores: E(): 1e-39%2C 45.83 38d in 240 aa	gene	gene900	http://www.ncbi.nlm.nih.gov/gene/?term=YE0896
YE0897	YE0897		YE0897	1027712	1028539	+	acyltransferase	Similar to Escherichia coli O157:H7 putative phospholipid biosynthesis acyltransferase Z4852 or Ecs4327 SWALL:Q8X6N6 (EMBL:AE005571) (273 aa) fasta scores: E(): 3e-50%2C 47.82 38d in 253 aa and to Neisseria meningitidis acyltransferase Nmb1698 SWALL:Q9JY82 (EMBL:AE002520) (252 aa) fasta scores: E(): 3.8e-24%2C 34.97 38d in 243 aa	gene	gene901	http://www.ncbi.nlm.nih.gov/gene/?term=YE0897
YE0898	YE0898		YE0898	1028539	1028796	+	acyl carrier protein	Similar to Escherichia coli O157:H7 putative acyl carrier protein Z4853 or Ecs4328 SWALL:Q8X6N5 (EMBL:AE005571) (85 aa) fasta scores: E(): 5.8e-19%2C 70.23 id in 84 aa%2C and to Neisseria meningitidis acyl carrier protein%2C putative Nmb1697 SWALL:Q9JY83 (EMBL:AE002520) (86 aa) fasta scores: E(): 2.5e-12%2C 51.76 38d in 85 aa	gene	gene902	http://www.ncbi.nlm.nih.gov/gene/?term=YE0898
YE0899	YE0899		YE0899	1028812	1029063	+	acyl carrier protein	carries the fatty acid chain in fatty acid biosynthesis	gene	gene903	http://www.ncbi.nlm.nih.gov/gene/?term=YE0899
YE0900	YE0900		YE0900	1029077	1029667	+	inner membrane protein	Similar to Escherichia coli O157:H7 hypothetical protein Z4855 or Ecs4330 SWALL:Q8X6M5 (EMBL:AE005571) (193 aa) fasta scores: E(): 1.7e-30%2C 46.96 38d in 181 aa and to Neisseria meningitidis putative integral membrane protein Nma1954 SWALL:Q9JT66 (EMBL:AL162757) (144 aa) fasta scores: E(): 8.1e-15%2C 38.88 38d in 144 aa	gene	gene904	http://www.ncbi.nlm.nih.gov/gene/?term=YE0900
YE0901	YE0901		YE0901	1029667	1031028	+	AMP-binding protein	Similar to many including: Escherichia coli O157:H7 putative putative surfactin synthetase Z4856 or Ecs4331 SWALL:Q8X6M3 (EMBL:AE005571) (453 aa) fasta scores: E(): 2.6e-64%2C 44.91 38d in 452 aa%2C Ralstonia solanacearum hypothetical protein Rs00787 SWALL:Q8XSV0 (EMBL:AL646078) (563 aa) fasta scores: E(): 3.1e-33%2C 32.86 38d in 432 aa and mycobacterium leprae O-succinylbenzoic acid-coa ligase mene or ml2257 SWALL:Q9CBB8 (EMBL:AL583924) (368 aa) fasta scores: E(): 0.00066%2C 21.63 38d in 379 aa.	gene	gene905	http://www.ncbi.nlm.nih.gov/gene/?term=YE0901
YE0902	YE0902		YE0902	1031025	1031372	+	dehydratase	Similar to many thioester dehydratase family proteins involved in fatty acid biosynthesis including: Escherichia coli O157:H7 Z4857 protein or ecs4332 SWALL:Q8X6M1 (EMBL:AE005571) (117 aa) fasta scores: E(): 5.8e-14%2C 51.42 38d in 105 aa%2C Escherichia coli%2CEscherichia coli O157:H7 FabZ or SefA SWALL:FABZ_ECOLI (SWALL:P21774) (151 aa) fasta scores: E(): 0.12%2C 34.34 38d in 99 aa%2C and to Yersinia enterocolitica FabZ SWALL:FABZ_YEREN (SWALL:P32205) (178 aa) fasta scores: E(): 0.47%2C 29.8 38d in 104 aa	gene	gene906	http://www.ncbi.nlm.nih.gov/gene/?term=YE0902
YE0903	YE0903		YE0903	1031363	1033129	+	bifunctional glycosyl transferase/acyl transferase	Similar to many including: Escherichia coli O157:H7 putative enzyme Z4858 or Ecs4333 SWALL:Q8X6L8 (EMBL:AE005571) (558 aa) fasta scores: E(): 7.3e-112%2C58.13 38d in 578 aa and to Methanosarcina acetivorans dolichyl-phosphate beta-D-mannosyltransferase Ma2169 SWALL:AAM05566 (EMBL:AE010903) (322 aa) fasta scores: E(): 3.1e-06%2C 24.16 38d in 298 aa	gene	gene907	http://www.ncbi.nlm.nih.gov/gene/?term=YE0903
YE0904	YE0904		YE0904	1033098	1033559	+	thioesterase	Similar to Escherichia coli O157:H7 hypothetical protein Z4859 or Ecs4334 SWALL:Q8X6L6 (EMBL:AE005571) (140 aa) fasta scores: E(): 1.2e-38%2C 66.91 38d in 136 aa and to Clostridium acetobutylicum predicted esterase Cac0271 SWALL:Q97MC7 (EMBL:AE007540) (138 aa) fasta scores: E(): 3e-07%2C 32.14 38d in 112 aa	gene	gene908	http://www.ncbi.nlm.nih.gov/gene/?term=YE0904
YE0905	YE0905		YE0905	1033556	1034161	+	outer-membrane lipoprotein carrier protein	Similar to several including: Escherichia coli O157:H7 hypothetical protein Z4860 or Ecs4335 SWALL:Q8X6L5 (EMBL:AE005571) (201 aa) fasta scores: E(): 1.1e-40%2C 55 id in 200 aa and to Pseudomonas syringae outer-membrane lipoproteins carrier protein LolA SWALL:LOLA_PSESY (SWALL:Q9Z3U0) (207 aa) fasta scores: E(): 0.069%2C 25 38d in 184 aa	gene	gene909	http://www.ncbi.nlm.nih.gov/gene/?term=YE0905
YE0906	YE0906		YE0906	1034151	1036466	+	inner membrane protein	Similar to many including: Escherichia coli O157:H7 protein Z4861 or Ecs4336 SWALL:Q8X6L3 (EMBL:AE005571) (772 aa) fasta scores: E(): 1.9e-163%2C 56.15 38d in 764 aa and to Ralstonia solanacearum probable lipoprotein transmembrane Rsp00775 SWALL:Q8XSV5 (EMBL:AL646078) (805 aa) fasta scores: E(): 1.3e-33%2C 29.31 38d in 788 aa	gene	gene910	http://www.ncbi.nlm.nih.gov/gene/?term=YE0906
YE0907	YE0907		YE0907	1036463	1037035	+	lipoprotein	Similar to Escherichia coli O157:H7 protein Z4862 or Ecs4337 SWALL:Q8X6L1 (EMBL:AE005571) (194 aa) fasta scores: E(): 7.3e-35%2C 55.42 38d in 175 aa	gene	gene911	http://www.ncbi.nlm.nih.gov/gene/?term=YE0907
YE0908	YE0908		YE0908	1037041	1038216	+	3-oxoacyl-ACP synthase	FabB%3B beta-ketoacyl-ACP synthase I%2C KASI%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP	gene	gene912	http://www.ncbi.nlm.nih.gov/gene/?term=YE0908
YE0909	YE0909		YE0909	1038213	1038677	+	dehydratase	Similar to Pseudomonas aeruginosa (3r)-hydroxymyristoyl-[acyl carrier protein] dehydratase FabZ or Pa3645 SWALL:FABZ_PSEAE (SWALL:Q9HXY7) (146 aa) fasta scores: E(): 0.00031%2C 30.07 38d in 133 aa%2C and to Escherichia coli O157:H7 z4864 protein z4864 or ecs4339 SWALL:Q8X6K7 (EMBL:AE005571) (154 aa) fasta scores: E(): 1.1e-28%2C 52.81 38d in 142 aa	gene	gene913	http://www.ncbi.nlm.nih.gov/gene/?term=YE0909
YE0910	YE0910	fabG	fabG	1038674	1039405	+	3-ketoacyl-ACP reductase	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis	gene	gene914	http://www.ncbi.nlm.nih.gov/gene/?term=YE0910
YE0911	YE0911	fabF	fabF	1039402	1040649	+	3-oxoacyl-(acyl carrier protein) synthase II	FabB%3B beta-ketoacyl-ACP synthase I%2C KASI%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP	gene	gene915	http://www.ncbi.nlm.nih.gov/gene/?term=YE0911
YE0912	YE0912	dkgB	dkgB	1040870	1041673	+	2%2C5-diketo-D-gluconate reductase B	catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid	gene	gene916	http://www.ncbi.nlm.nih.gov/gene/?term=YE0912
YE0914	YE0914		YE0914	1041897	1042799	-	LysR family transcriptional regulator	Similar to many LysR-family regulatory proteins including: Escherichia coli hypothetical transcriptional regulator YafC or b0208 SWALL:YAFC_ECOLI (SWALL:P30864) (304 aa) fasta scores: E(): 1.1e-75%2C 65.43 38d in 298 aa and Salmonella typhimurium putative transcriptional regulator YafC or stm0256 SWALL:Q8ZRM6 (EMBL:AE008706) (304 aa) fasta scores: E(): 1.7e-75%2C 65.77 38d in 298 aa	gene	gene917	http://www.ncbi.nlm.nih.gov/gene/?term=YE0914
YE0915	YE0915		YE0915	1042918	1044101	+			gene	gene918	http://www.ncbi.nlm.nih.gov/gene/?term=YE0915
YE0917	YE0917		YE0917	1044344	1045126	+	hypothetical protein		gene	gene919	http://www.ncbi.nlm.nih.gov/gene/?term=YE0917
YE0918	YE0918	mltD	mltD	1045178	1046608	-	membrane-bound lytic murein transglycosylase D	catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues%3B may play a role in recycling muropeptides during cell division and/or cell elongation%3B in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall	gene	gene920	http://www.ncbi.nlm.nih.gov/gene/?term=YE0918
YE0919	YE0919	gloB	gloB	1046641	1047396	-	hydroxyacylglutathione hydrolase		gene	gene921	http://www.ncbi.nlm.nih.gov/gene/?term=YE0919
YE0920	YE0920		YE0920	1047443	1048162	+	hypothetical protein		gene	gene922	http://www.ncbi.nlm.nih.gov/gene/?term=YE0920
YE0921	YE0921	rnhA	rnhA	1048190	1048654	-	ribonuclease H	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids	gene	gene923	http://www.ncbi.nlm.nih.gov/gene/?term=YE0921
YE0922	YE0922	dnaQ	dnaQ	1048780	1049496	+	DNA polymerase III subunit epsilon	3'-5' exonuclease of DNA polymerase III	gene	gene924	http://www.ncbi.nlm.nih.gov/gene/?term=YE0922
YE0923	YE0923	proX	proX	1049954	1050958	-	glycine betaine transporter substrate-binding protein	with ProVW%2C part of the high-affinity transport system for the osmoprotectant glycine betaine	gene	gene926	http://www.ncbi.nlm.nih.gov/gene/?term=YE0923
YE0924	YE0924	proW	proW	1051114	1052295	-	glycine betaine transporter membrane protein	with ProVX is involved in the high-affinity uptake of glycine betaine	gene	gene927	http://www.ncbi.nlm.nih.gov/gene/?term=YE0924
YE0925	YE0925	proV	proV	1052288	1053487	-	glycine betaine/L-proline transport ATP-binding protein		gene	gene928	http://www.ncbi.nlm.nih.gov/gene/?term=YE0925
YE0926	YE0926	nrdF	nrdF	1053982	1054953	-	ribonucleotide-diphosphate reductase subunit beta	B2 or R2 protein%3B type 1b enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdE	gene	gene929	http://www.ncbi.nlm.nih.gov/gene/?term=YE0926
YE0927	YE0927	nrdE	nrdE	1055214	1057295	-	ribonucleotide-diphosphate reductase subunit alpha	Catalyzes the rate-limiting step in dNTP synthesis	gene	gene930	http://www.ncbi.nlm.nih.gov/gene/?term=YE0927
YE0928	YE0928	nrdI	nrdI	1057346	1057750	-	ribonucleotide reductase stimulatory protein	in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF	gene	gene931	http://www.ncbi.nlm.nih.gov/gene/?term=YE0928
YE0929	YE0929	nrdH	nrdH	1057764	1058000	-	glutaredoxin		gene	gene932	http://www.ncbi.nlm.nih.gov/gene/?term=YE0929
YE0930	YE0930		YE0930	1058283	1058714	-	hypothetical protein	Similar to Salmonella typhimurium putative cytoplasmic protein Stm2804 SWALL:Q8ZML2 (EMBL:AE008828) (143 aa) fasta scores: E(): 3.2e-28%2C 54.22 38d in 142 aa%2Cand to Escherichia coli O157:H7 hypothetical protein Z3974 or ecs3535 SWALL:Q8X921 (EMBL:AE005496) (143 aa) fasta scores: E(): 4.3e-28%2C 54.22 38d in 142 aa	gene	gene933	http://www.ncbi.nlm.nih.gov/gene/?term=YE0930
YE0931	YE0931		YE0931	1058810	1060264	+	GntR family transcriptional regulator	Similar to Salmonella typhimurium putative regulatory protein%2C GntR family Stm2803 SWALL:Q8ZML3 (EMBL:AE008828) (444 aa) fasta scores: E(): 1.7e-64%2C48.35 38d in 455 aa%2C and to Rhizobium meliloti probable rhizopine catabolism regulatory protein MocR SWALL:MOCR_RHIME (SWALL:P49309) (493 aa) fasta scores: E(): 2.1e-56%2C 37.07 38d in 445 aa	gene	gene934	http://www.ncbi.nlm.nih.gov/gene/?term=YE0931
YE0932	YE0932		YE0932	1060412	1060720	-	inner membrane protein	Similar to Yersinia pestis putative membrane protein Ypo0570 SWALL:Q8ZID5 (EMBL:AJ414143) (101 aa) fasta scores: E(): 2.2e-14%2C 53.06 38d in 98 aa and to Escherichia coli%2C and Escherichia coli O157:H7 elab protein ElaB or B2266 or z3526 or ecs3154 SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E(): 2.7e-13%2C 51.08 id in 92 aa	gene	gene935	http://www.ncbi.nlm.nih.gov/gene/?term=YE0932
YE0933	YE0933	asr	asr	1061138	1061536	+	acid shock protein	required for growth and survival under moderately acid conditions	gene	gene936	http://www.ncbi.nlm.nih.gov/gene/?term=YE0933
YE0934	YE0934		YE0934	1061732	1062835	-	hypothetical protein	Similar in parts to several including: Agrobacterium tumefaciens hypothetical protein Atu0247 atu0247 or agr_c_423 SWALL:Q8UIP6 (EMBL:AE008997) (395 aa) fasta scores: E(): 1.7e-27%2C 33.61 38d in 351 aa and to Ralstonia solanacearum probable lipoprotein signal peptide Rsp1248 or rs03192 SWALL:Q8XQH7 (EMBL:AL646083) (372 aa) fasta scores: E(): 3.7e-15%2C 28.3 38d in 325 aa	gene	gene937	http://www.ncbi.nlm.nih.gov/gene/?term=YE0934
YE0935	YE0935		YE0935	1062927	1063934	+	AraC family transcription regulator	Similar to several ARAC-family transcriptional regulators including: Agrobacterium tumefaciens Atu0248 or agr_c_425 SWALL:Q8UIP5 (EMBL:AE008997) (365 aa) fasta scores: E(): 5e-32%2C 36.98 38d in 338 aa and to Vibrio cholerae transcriptional regulator%2C arac/xyls family Vca0926 SWALL:Q9KL23 (EMBL:AE004420) (365 aa) fasta scores: E(): 2.1e-14%2C 30.76 38d in 351 aa	gene	gene938	http://www.ncbi.nlm.nih.gov/gene/?term=YE0935
YE0936	YE0936		YE0936	1064021	1064492	+			gene	gene939	http://www.ncbi.nlm.nih.gov/gene/?term=YE0936
YE0937	YE0937		YE0937	1064607	1064942	+	hypothetical protein		gene	gene940	http://www.ncbi.nlm.nih.gov/gene/?term=YE0937
YE0938	YE0938	yicN	yicN	1064993	1065442	-	hypothetical protein		gene	gene941	http://www.ncbi.nlm.nih.gov/gene/?term=YE0938
YE0939	YE0939		YE0939	1065533	1065871	-	hypothetical protein	Similar to the N-terminus of Halomonas elongata MobD protein SWALL:Q9K589 (EMBL:AJ243735) (73 aa) fasta scores: E(): 0.053%2C 35.59 38d in 59 aa	gene	gene942	http://www.ncbi.nlm.nih.gov/gene/?term=YE0939
YE0940	YE0940	cspB	cspB	1066253	1066465	+	cold shock-like protein CspG	Similar to Escherichia coli%2C and Escherichia coli O157:H7 cold shock-like protein CspG cspG or cspI or b0990 or z1406 or ecs1145 SWALL:CSPG_ECOLI (SWALL:Q47130) (70 aa) fasta scores: E(): 1.7e-21%2C 77.14 38d in 70 aa%2C and to Yersinia pestis%2C and Yersinia enterocolitica cold shock-like protein CspB cspB or cspG or ypo2659 or y1230 SWALL:CSPB_YERPE (SWALL:O85593) (70 aa) fasta scores: E(): 6.9e-28%2C 100 38d in 70 aa%2C and to Yersinia pestis major cold shock protein CspA1 cspA1 or ypo3644 SWALL:Q8ZAY7 (EMBL:AJ414158) (70 aa) fasta scores: E(): 1.3e-25%2C 91.42 id in 70 aa	gene	gene943	http://www.ncbi.nlm.nih.gov/gene/?term=YE0940
YE0941	YE0941	ftrA	ftrA	1066554	1067513	-	transcriptional activator FtrA	upregulated by FixLJ/FixK under oxygen limitation%3B involved in regulation of genes involved in carbon and amino acid metabolism	gene	gene944	http://www.ncbi.nlm.nih.gov/gene/?term=YE0941
YE0942	YE0942		YE0942	1067634	1068071	+	rhodanese-like protein		gene	gene945	http://www.ncbi.nlm.nih.gov/gene/?term=YE0942
YE0946	YE0946		YE0946	1069617	1071200	+	solute-binding protein		gene	gene946	http://www.ncbi.nlm.nih.gov/gene/?term=YE0946
YE0947	YE0947		YE0947	1071200	1072168	+	hypothetical protein		gene	gene947	http://www.ncbi.nlm.nih.gov/gene/?term=YE0947
YE0948	YE0948		YE0948	1072165	1072971	+	binding-protein-dependent transport protein		gene	gene948	http://www.ncbi.nlm.nih.gov/gene/?term=YE0948
YE0949	YE0949		YE0949	1072971	1073777	+	transport ATPase		gene	gene949	http://www.ncbi.nlm.nih.gov/gene/?term=YE0949
YE0950	YE0950		YE0950	1073770	1074435	+	transport ATPase		gene	gene950	http://www.ncbi.nlm.nih.gov/gene/?term=YE0950
YE0951	YE0951	ureA	ureA	1075582	1075884	+	urease subunit gamma	UreA%2C with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide%3B nickel metalloenzyme%3B accessory proteins UreD%2C UreE%2C UreF%2C and UreG are necessary for assembly of the metallocenter	gene	gene951	http://www.ncbi.nlm.nih.gov/gene/?term=YE0951
YE0952	YE0952	ureB	ureB	1075938	1076432	+	urease subunit beta	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide%3B in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa%3B the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta)	gene	gene952	http://www.ncbi.nlm.nih.gov/gene/?term=YE0952
YE0953	YE0953	ureC	ureC	1076597	1078315	+	urease subunit alpha	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide%3B in Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa%3B the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits	gene	gene953	http://www.ncbi.nlm.nih.gov/gene/?term=YE0953
YE0954	YE0954	ureE	ureE	1078489	1079181	+	urease accessory protein UreE	involved in the assembly of the urease metallocenter%3B possible nickel donor	gene	gene954	http://www.ncbi.nlm.nih.gov/gene/?term=YE0954
YE0955	YE0955	ureF	ureF	1079203	1079889	+	urease accessory protein		gene	gene955	http://www.ncbi.nlm.nih.gov/gene/?term=YE0955
YE0956	YE0956	ureG	ureG	1080067	1080672	+	urease accessory protein		gene	gene956	http://www.ncbi.nlm.nih.gov/gene/?term=YE0956
YE0957	YE0957	ureD	ureD	1080669	1081652	+	urease accessory protein	Previously sequenced from several yersinias including: Yersinia pseudotuberculosis urease accessory protein UreD SWALL:URED_YERPS (SWALL:P52316) (321 aa) fasta scores: E(): 2.7e-122%2C 92.66 38d in 327 aa and Yersinia enterocolitica urease accessory protein UreD SWALL:URED_YEREN (SWALL:P42868) (325 aa) fasta scores: E(): 3.1e-124%2C 98.71 38d in 310 aa. Note the very N-terminal portion of this protein is identical to that of Y. pseudotuberculosis and Y. pestis (not shown) and differs from that previously published for Y. enterocolitica.	gene	gene957	http://www.ncbi.nlm.nih.gov/gene/?term=YE0957
YE0958	YE0958		YE0958	1081767	1082756	+	urea transporter		gene	gene958	http://www.ncbi.nlm.nih.gov/gene/?term=YE0958
YE0959	YE0959		YE0959	1082780	1083838	+	nickel transport protein		gene	gene959	http://www.ncbi.nlm.nih.gov/gene/?term=YE0959
YE0960	YE0960	hdeB	hdeB	1083904	1084236	-	acid-resistance protein		gene	gene960	http://www.ncbi.nlm.nih.gov/gene/?term=YE0960
YE0961	YE0961		YE0961	1084592	1085767	+	voltage-gated potassium channel		gene	gene961	http://www.ncbi.nlm.nih.gov/gene/?term=YE0961
YE0962	YE0962		YE0962	1085778	1086008	-	hypothetical protein	doubtful CDS which is similar in parts to Yersinia pestis hypothetical protein Ypo2189 SWALL:Q8ZEI1 (EMBL:AJ414151) (82 aa) fasta scores: E(): 6.7e-08%2C 62.5 id in 56 aa	gene	gene962	http://www.ncbi.nlm.nih.gov/gene/?term=YE0962
YE0963	YE0963	ccrB	ccrB	1086013	1086417	-	camphor resistance protein CrcB	may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling	gene	gene963	http://www.ncbi.nlm.nih.gov/gene/?term=YE0963
YE0964	YE0964		YE0964	1086487	1086867	-	hypothetical protein		gene	gene964	http://www.ncbi.nlm.nih.gov/gene/?term=YE0964
YE0965	YE0965		YE0965	1087056	1088090	+	aldo-keto reductase	Similar to many including: Escherichia coli O157:H7 hypothetical protein YghZ or z4354 or ecs3885 SWALL:YGHZ_ECO57 (SWALL:Q8X529) (346 aa) fasta scores: E(): 1.2e-109%2C 79.19 38d in 346 aa%2C Streptomyces coelicolor putative oxidoreductase Sco7594 or Sc7h9.06 SWALL:Q9EWJ0 (EMBL:AL450223) (348 aa) fasta scores: E(): 3.9e-80%2C 60.81 38d in 342 aa and to several Eukaryotic potassium channel accessory proteins e.g. Xenopus laevis voltage-gated potassium channel beta-2 subunit Kcnab2 or kvb-a or kvb2 SWALL:KVB2_XENLA (SWALL:Q9PTM5) (367 aa) fasta scores: E(): 2e-31%2C 36.87 38d in 339 aa	gene	gene965	http://www.ncbi.nlm.nih.gov/gene/?term=YE0965
YE0966	YE0966		YE0966	1088342	1089505	-	hypothetical protein	Similar to many including: Escherichia coli O157:H7 putative dehydrogenase YliI or Z1063 or Ecs0917 SWALL:Q8X6U6 (EMBL:AE005265) (371 aa) fasta scores: E(): 3e-95%2C 65.31 38d in 369 aa and to Salmonella typhi putative oxidoreductase YliI or Sty0894 SWALL:Q8Z860 (EMBL:AL627268) (373 aa) fasta scores: E(): 1.9e-94%2C65.58 38d in 369 aa	gene	gene966	http://www.ncbi.nlm.nih.gov/gene/?term=YE0966
YE0967	YE0967	celA	celA	1090080	1090397	+	PTS system N%2CN'-diacetylchitobiose-specific transporter subunit IIB	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake	gene	gene967	http://www.ncbi.nlm.nih.gov/gene/?term=YE0967
YE0968	YE0968	celB	celB	1090408	1091769	+	PTS system N%2CN'-diacetylchitobiose-specific transporter subunit IIC	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake	gene	gene968	http://www.ncbi.nlm.nih.gov/gene/?term=YE0968
YE0969	YE0969		YE0969	1091808	1093193	+	glycosyl hydrolase	Similar to many glycosyl hydrolases including: Salmonella typhi putative Sty4009 SWALL:Q8Z2J8 (EMBL:AL627280) (460 aa) fasta scores: E(): 2.3e-135%2C64.85 38d in 461 aa and to Caldocellum saccharolyticum beta-glucosidase A BglA SWALL:BGLS_CALSA (SWALL:P10482) (455 aa) fasta scores: E(): 8.6e-54%2C 33.33 38d in 468 aa	gene	gene969	http://www.ncbi.nlm.nih.gov/gene/?term=YE0969
YE0970	YE0970	celC	celC	1093222	1093569	+	PTS system N%2CN'-diacetylchitobiose-specific transporter subunit IIA	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake	gene	gene970	http://www.ncbi.nlm.nih.gov/gene/?term=YE0970
YE0971	YE0971	celD	celD	1093621	1094451	+	DNA-binding transcriptional regulator ChbR	represses the celABCDF-ydjC operon involved in carbon uptake	gene	gene971	http://www.ncbi.nlm.nih.gov/gene/?term=YE0971
YE0972	YE0972		YE0972	1094500	1095261	+	hypothetical protein		gene	gene972	http://www.ncbi.nlm.nih.gov/gene/?term=YE0972
YE0973	YE0973		YE0973	1095323	1096774	-	membrane transport protein	Similar to many sulphate permeases including: Pseudomonas sp. R9 sulfate permease SWALL:Q9RBV5 (EMBL:AF157797) (495 aa) fasta scores: E(): 6.8e-74%2C46.13 38d in 466 aa and to Bacillus halodurans sulfate permease bh0414 SWALL:Q9KFR3 (EMBL:AP001508) (486 aa) fasta scores: E(): 1e-77%2C 46.46 38d in 467 aa	gene	gene973	http://www.ncbi.nlm.nih.gov/gene/?term=YE0973
YE0974	YE0974		YE0974	1096884	1097051	-			gene	gene974	http://www.ncbi.nlm.nih.gov/gene/?term=YE0974
YE0975	YE0975		YE0975	1097520	1098374	+	hypothetical protein	Similar to Escherichia coli O157:H7 hypothetical protein Z3947 or Ecs3514 SWALL:Q8X967 (EMBL:AE005493) (283 aa) fasta scores: E(): 1.2e-65%2C 57.04 38d in 284 aa	gene	gene975	http://www.ncbi.nlm.nih.gov/gene/?term=YE0975
YE0975A	YE0975A		YE0975A	1098498	1098698	+	hypothetical protein	Similar to many including: Escherichia coli O157:H7 putative DNA binding protein Z3946 or ecs3513 SWALL:Q8X969 (EMBL:AE005493) (68 aa) fasta scores: E(): 1.1e-17%2C 69.23 id in 65 aa%2C and to Yersinia pestis putative regulatory protein Ypo0878 SWALL:Q8ZHL3 (EMBL:AJ414145) (66 aa) fasta scores: E(): 3.7e-13%2C 54.68 38d in 64 aa	gene	gene976	http://www.ncbi.nlm.nih.gov/gene/?term=YE0975A
YE0976	YE0976		YE0976	1098715	1099029	+	hypothetical protein	no significant database hits	gene	gene977	http://www.ncbi.nlm.nih.gov/gene/?term=YE0976
YE0977	YE0977		YE0977	1099313	1100518	+	integrase/recombinase	Similar to Escherichia coli O157:H7 putative site specific recombinase Ecs3512 SWALL:Q8X3D8 (EMBL:AP002562) (401 aa) fasta scores: E(): 4.9e-48%2C 36.82 38d in 391 aa and to Staphylococcus aureus transposase A from transposon Tn554 SWALL:TNPA_STAAM (SWALL:P06696) (361 aa) fasta scores: E(): 4.6e-05%2C 24.65 38d in 365 aa	gene	gene978	http://www.ncbi.nlm.nih.gov/gene/?term=YE0977
YE0978	YE0978		YE0978	1100515	1101873	+	integrase/recombinase	Similar to Escherichia coli O157:H7 hypothetical protein Z3943 or Ecs3511 SWALL:Q8X972 (EMBL:AE005493) (441 aa) fasta scores: E(): 9.1e-41%2C 32.73 38d in 443 aa and in the C-terminus to several putative integrases: Aquifex aeolicus probable integrase/recombinase Aa09 SWALL:YZ09_AQUAE (SWALL:O66403) (315 aa) fasta scores: E(): 9.3%2C 22.89 38d in 345 aa	gene	gene979	http://www.ncbi.nlm.nih.gov/gene/?term=YE0978
YE0979	YE0979		YE0979	1101870	1103729	+	DNA-binding protein	Similar to Escherichia coli O157:H7 hypothetical protein Z3942 SWALL:Q8X403 (EMBL:AE005493) (470 aa) fasta scores: E(): 2.2e-45%2C 36.66 38d in 510 aa and to Pasteurella multocida hypothetical protein Pm1947 SWALL:Q9CJP7 (EMBL:AE006231) (678 aa) fasta scores: E(): 6.2e-39%2C 26.62 38d in 631 aa	gene	gene980	http://www.ncbi.nlm.nih.gov/gene/?term=YE0979
YE0980	YE0980		YE0980	1103765	1104169	+	hypothetical protein	Similar to Escherichia coli O157:H7 hypothetical protein Ecs3509 SWALL:Q8X5G1 (EMBL:AP002562) (132 aa) fasta scores: E(): 2.8e-17%2C 46.56 38d in 131 aa and to Pasteurella multocida hypothetical protein Pm1946 SWALL:Q9CJP8 (EMBL:AE006231) (136 aa) fasta scores: E(): 5.1e-11%2C 35.77 38d in 123 aa	gene	gene981	http://www.ncbi.nlm.nih.gov/gene/?term=YE0980
YE0981	YE0981		YE0981	1104276	1104698	+	hypothetical protein	Similar in parts to Escherichia coli O157:H7 hypothetical protein Z3940 or Ecs3508 SWALL:Q8X976 (EMBL:AE005493) (156 aa) fasta scores: E(): 0.012%2C 25.38 id in 130 aa	gene	gene982	http://www.ncbi.nlm.nih.gov/gene/?term=YE0981
YE0982	YE0982		YE0982	1104747	1105136	-	lipoprotein	Similar to Escherichia coli O157:H7 hypothetical protein Z3937 or Ecs3506 SWALL:Q8X978 (EMBL:AE005493) (131 aa) fasta scores: E(): 6.4e-13%2C 36.79 38d in 125 aa%2C and to Buchnera aphidicola small protein A homolog precursor SmpA or Bu186 SWALL:SMPA_BUCAI (SWALL:P57283) (102 aa) fasta scores: E(): 4%2C 30.58 38d in 85 aa	gene	gene983	http://www.ncbi.nlm.nih.gov/gene/?term=YE0982
YE0983	YE0983		YE0983	1105166	1105807	-	hypothetical protein	no significant database hits	gene	gene984	http://www.ncbi.nlm.nih.gov/gene/?term=YE0983
YE0984	YE0984		YE0984	1106028	1107299	-	repetative plasmid-related protein	Similar in the N-terminus to several proteins which carry out plasmid or transposon mobility-related functions including: Bacteroides fragilis mobilization protein BmgA SWALL:Q8RM71 (EMBL:AY053505) (308 aa) fasta scores: E(): 2.7e-05%2C 24.7 38d in 251 aa%2C Bacteroides thetaiotaomicron MobA protein SWALL:Q93L54 (EMBL:AJ311171) (303 aa) fasta scores: E(): 0.00018%2C 23.88 38d in 247 aa%2C and Shigella sonnei relaxase NikB SWALL:Q9R2J7 (EMBL:AB021078) (899 aa) fasta scores: E(): 0.53%2C 22.07 38d in 222 aa. This CDS also possesses a region containing 23xAP repeats which because of its low complexity has many spurious database hits.	gene	gene985	http://www.ncbi.nlm.nih.gov/gene/?term=YE0984
YE0986	YE0986		YE0986	1107316	1107732	-	ATP/GTP-binding protein	Weakly similar in parts to Pasteurella multocida%2Cand Pasteurella haemolytica MbecY or MobC SWALL:Q51926 (EMBL:U57647) (101 aa) fasta scores: E(): 1.9%2C 30 38d in 100 aa	gene	gene986	http://www.ncbi.nlm.nih.gov/gene/?term=YE0986
YE0987	YE0987		YE0987	1108214	1108765	-	inner membrane protein	no significant database hits	gene	gene987	http://www.ncbi.nlm.nih.gov/gene/?term=YE0987
YE0988	YE0988		YE0988	1108807	1110333	-	hypothetical protein	Similar to Bacillus anthracis str. A2012 hypothetical protein%2C Bxb0100 SWALL:AAM26251 (EMBL:AE011191) (541 aa) fasta scores: E(): 2.2e-22%2C28.14 38d in 533 aa and to Lactococcus phage BK5-T hypothetical 61.9 kDa protein SWALL:Q38324 (EMBL:AF176025) (536 aa) fasta scores: E(): 1.4e-16%2C 26.69 38d in 547 aa	gene	gene988	http://www.ncbi.nlm.nih.gov/gene/?term=YE0988
YE0989	YE0989		YE0989	1110505	1110981	+	hypothetical protein	no significant database hits	gene	gene989	http://www.ncbi.nlm.nih.gov/gene/?term=YE0989
YE0990	YE0990		YE0990	1111058	1112893	-	AYP/GTP-binding protein	Similar to Agrobacterium tumefaciens hypothetical protein Yme%2C from the octopine-type Ti plasmid sequence SWALL:O52294 (EMBL:AF242881) (660 aa) fasta scores: E(): 3.4e-05%2C 22.96 38d in 662 aa	gene	gene990	http://www.ncbi.nlm.nih.gov/gene/?term=YE0990
YE0991	YE0991		YE0991	1112875	1113297	-	hypothetical protein	no significant database hits	gene	gene991	http://www.ncbi.nlm.nih.gov/gene/?term=YE0991
YE0992	YE0992		YE0992	1113318	1114508	-	hypothetical protein	Similar to Vibrio cholerae hypothetical protein Vc0492 SWALL:Q9KUM3 (EMBL:AE004135) (388 aa) fasta scores: E(): 2e-07%2C 24.54 38d in 383 aa and to Agrobacterium tumefaciens Ymg%2C from the octopine-type Ti plasmid sequence SWALL:O52296 (EMBL:AF242881) (388 aa) fasta scores: E(): 0.00029%2C 20.1 38d in 383 aa	gene	gene992	http://www.ncbi.nlm.nih.gov/gene/?term=YE0992
YE0993	YE0993		YE0993	1114774	1116003	-	prophage integrase		gene	gene993	http://www.ncbi.nlm.nih.gov/gene/?term=YE0993
YE0994	YE0994	smpB	smpB	1116598	1117080	-	SsrA-binding protein	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes%3B also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site%3B SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus%3B both the tmRNA and SmpB are regulated in cell cycle-dependent manner%3B functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation	gene	gene995	http://www.ncbi.nlm.nih.gov/gene/?term=YE0994
YE0995	YE0995		YE0995	1117241	1117675	+	hypothetical protein		gene	gene996	http://www.ncbi.nlm.nih.gov/gene/?term=YE0995
YE0996	YE0996		YE0996	1117719	1117952	+	hypothetical protein		gene	gene997	http://www.ncbi.nlm.nih.gov/gene/?term=YE0996
YE0997	YE0997		YE0997	1118105	1118446	-	hypothetical protein		gene	gene998	http://www.ncbi.nlm.nih.gov/gene/?term=YE0997
YE0998	YE0998		YE0998	1118560	1120239	-	recombination and repair protein		gene	gene999	http://www.ncbi.nlm.nih.gov/gene/?term=YE0998
YE0999	YE0999	ppnK	ppnK	1120308	1121189	-	inorganic polyphosphate/ATP-NAD kinase	catalyzes the phosphorylation of NAD to NADP	gene	gene1000	http://www.ncbi.nlm.nih.gov/gene/?term=YE0999
YE1000	YE1000		YE1000	1121313	1121891	+	heat shock protein GrpE	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins%3B may act as a thermosensor	gene	gene1001	http://www.ncbi.nlm.nih.gov/gene/?term=YE1000
YE1001	YE1001	tnp	tnp	1122080	1122538	+	transposase for IS1541	Previously sequenced as Yersinia enterocolitica IS1541 element transposase Tnp SWALL:Q9X9G7 (EMBL:AJ238016) (152 aa) fasta scores: E(): 1.2e-66%2C 100 id in 152 aa. Also similar to many other IS200-like transposases e.g. Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence element IS200 SWALL:T200_SALTY (SWALL:Q57334) (152 aa) fasta scores: E(): 9.6e-64%2C 94.73 38d in 152 aa	gene	gene1002	http://www.ncbi.nlm.nih.gov/gene/?term=YE1001
YE1002	YE1002	ung	ung	1122673	1123359	-	uracil-DNA glycosylase	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine	gene	gene1003	http://www.ncbi.nlm.nih.gov/gene/?term=YE1002
YE1003	YE1003		YE1003	1123711	1124094	+	autonomous glycyl radical cofactor GrcA	stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit	gene	gene1004	http://www.ncbi.nlm.nih.gov/gene/?term=YE1003
YE1005	YE1005	yplA	yplA	1124315	1125289	+	phospholipase A	Previously sequenced as: Yersinia enterocolitica phospholipase A YplA SWALL:O85477 (EMBL:AF067849) (324 aa) fasta scores: E(): 9.3e-114%2C 100 38d in 324 aa. Also highly similar to Yersinia pestis phospholipase A YplA or Ypo2706 SWALL:Q8ZD83 (EMBL:AJ414153) (320 aa) fasta scores: E(): 9.1e-75%2C 69.01 38d in 326 aa	gene	gene1005	http://www.ncbi.nlm.nih.gov/gene/?term=YE1005
YE1006	YE1006	yplB	yplB	1125378	1126034	+	phospholipase A accessory protein		gene	gene1006	http://www.ncbi.nlm.nih.gov/gene/?term=YE1006
YE1007	YE1007	rbaB	rbaB	1126359	1127684	-	ATP-dependent RNA helicase SrmB	facilitates an early step in the assembly of the 50S subunit of the ribosome	gene	gene1007	http://www.ncbi.nlm.nih.gov/gene/?term=YE1007
YE1008	YE1008		YE1008	1127808	1128563	+	hypothetical protein		gene	gene1008	http://www.ncbi.nlm.nih.gov/gene/?term=YE1008
YE1009	YE1009	nadB	nadB	1128691	1130328	-	L-aspartate oxidase	catalyzes the formation of oxaloacetate from L-aspartate	gene	gene1009	http://www.ncbi.nlm.nih.gov/gene/?term=YE1009
YE1010	YE1010	rpoE	rpoE	1130517	1131092	+	RNA polymerase sigma factor RpoE	Member of the extracytoplasmic function sigma factors which are active under specific conditions%3B binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription%3B this sigma factor is involved in heat shock and oxidative stress response	gene	gene1010	http://www.ncbi.nlm.nih.gov/gene/?term=YE1010
YE1011	YE1011	mclA	mclA	1131117	1131773	+	anti-RNA polymerase sigma factor SigE		gene	gene1011	http://www.ncbi.nlm.nih.gov/gene/?term=YE1011
YE1012	YE1012	rseB	rseB	1131773	1132729	+	periplasmic negative regulator of sigmaE	periplasmic protein%3B interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP	gene	gene1012	http://www.ncbi.nlm.nih.gov/gene/?term=YE1012
YE1013	YE1013	rseC	rseC	1132726	1133187	+	SoxR reducing system protein RseC	involved in the reduction of the SoxR iron-sulfur cluster	gene	gene1013	http://www.ncbi.nlm.nih.gov/gene/?term=YE1013
YE1014	YE1014		YE1014	1133202	1134038	-	hypothetical protein		gene	gene1014	http://www.ncbi.nlm.nih.gov/gene/?term=YE1014
YE1015	YE1015	lepA	lepA	1134410	1136209	+	GTP-binding protein LepA	binds to the ribosome on the universally-conserved alpha-sarcin loop	gene	gene1015	http://www.ncbi.nlm.nih.gov/gene/?term=YE1015
YE1016	YE1016	lepB	lepB	1136219	1137217	+	signal peptidase I	catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins	gene	gene1016	http://www.ncbi.nlm.nih.gov/gene/?term=YE1016
YE1017	YE1017	rnc	rnc	1137463	1138143	+	ribonuclease III	cytoplasmic enzyme involved in processing rRNA and some mRNAs%3B substrates typically have dsRNA regions%3B forms a homodimer%3B have N-terminal nuclease and C-terminal RNA-binding domains%3B requires magnesium as preferred ion for activity	gene	gene1017	http://www.ncbi.nlm.nih.gov/gene/?term=YE1017
YE1018	YE1018	era	era	1138140	1139051	+	GTP-binding protein Era	Era%3B Escherichia coli Ras-like protein%3B Bex%3B Bacillus Era-complementing segment%3B essential protein in Escherichia coli that is involved in many cellular processes%3B GTPase%3B binds the cell membrane through apparent C-terminal domain%3B mutants are arrested during the cell cycle%3B Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome	gene	gene1018	http://www.ncbi.nlm.nih.gov/gene/?term=YE1018
YE1019	YE1019	recO	recO	1139061	1139786	+	DNA repair protein RecO	involved in DNA repair and RecFOR pathway recombination%3B RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA	gene	gene1019	http://www.ncbi.nlm.nih.gov/gene/?term=YE1019
YE1020	YE1020	pdxJ	pdxJ	1139955	1140686	+	pyridoxine 5'-phosphate synthase	involved in the de novo synthesis of pyridoxine (Vitamin B6)	gene	gene1020	http://www.ncbi.nlm.nih.gov/gene/?term=YE1020
YE1021	YE1021	acpS	acpS	1140686	1141066	+	4'-phosphopantetheinyl transferase	Catalyzes the formation of holo-ACP%2C which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids	gene	gene1021	http://www.ncbi.nlm.nih.gov/gene/?term=YE1021
YE1022	YE1022		YE1022	1141105	1141263	+	hypothetical protein	Similar to Yersinia pestis hypothetical protein Ypo2189 SWALL:Q8ZEI1 (EMBL:AJ414151) (82 aa) fasta scores: E(): 1.3e-05%2C 56.86 38d in 51 aa and Yersinia pestis putative membrane protein Ypo2495 SWALL:Q8ZDR1 (EMBL:AJ414152) (60 aa) fasta scores: E(): 0.00017%2C 57.77 id in 45 aa	gene	gene1022	http://www.ncbi.nlm.nih.gov/gene/?term=YE1022
YE1023	YE1023	gntP	gntP	1141652	1142995	+	fructuronate transporter		gene	gene1023	http://www.ncbi.nlm.nih.gov/gene/?term=YE1023
YE1024	YE1024	fdx	fdx	1143061	1143321	-	[4Fe-4S] ferredoxin		gene	gene1024	http://www.ncbi.nlm.nih.gov/gene/?term=YE1024
YE1025	YE1025		YE1025	1143383	1144225	-	DNA-binding transcriptional regulator		gene	gene1025	http://www.ncbi.nlm.nih.gov/gene/?term=YE1025
YE1026	YE1026		YE1026	1144382	1145104	-	LuxR family transcriptional regulator	Similar to many LuxR paralogues involved in quorum sensing including the previously characterised Y. enterocolitica regulator: Yersinia enterocolitica transcriptional activator protein YenR SWALL:YENR_YEREN (SWALL:P54295) (244 aa) fasta scores: E(): 5.6e-37%2C 43.15 id in 241 aa%2CSerratia sp. ATCC 39006 SmaR protein SWALL:Q9L3I8 (EMBL:AJ275980) (247 aa) fasta scores: E(): 1.4e-56%2C 58.67 38d in 242 aa%2C and to Erwinia chrysanthemi transcriptional activator protein EchR echR SWALL:ECHR_ERWCH (SWALL:Q46967) (250 aa) fasta scores: E(): 7.1e-45%2C 50.62 38d in 239 aa	gene	gene1026	http://www.ncbi.nlm.nih.gov/gene/?term=YE1026
YE1026A	YE1026A	nlp	nlp	1145384	1145656	+	DNA-binding protein		gene	gene1027	http://www.ncbi.nlm.nih.gov/gene/?term=YE1026A
YE1027	YE1027	murQ	murQ	1145742	1146629	+	N-acetylmuramic acid 6-phosphate etherase	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway	gene	gene1028	http://www.ncbi.nlm.nih.gov/gene/?term=YE1027
YE1028	YE1028	yfhB	yfhB	1146835	1147422	+	hypothetical protein		gene	gene1029	http://www.ncbi.nlm.nih.gov/gene/?term=YE1028
YE1029	YE1029		YE1029	1147451	1148500	-	integral membrane protein	Similar to Pseudomonas aeruginosa hypothetical protein Pa0736 SWALL:Q9I5J3 (EMBL:AE004508) (358 aa) fasta scores: E(): 1.2e-07%2C 26.68 38d in 341 aa. The very C-terminus of this protein is highly similar to Rickettsia conorii hypothetical protein Rc0944 SWALL:Q92H28 (EMBL:AE008647) (69 aa) fasta scores: E(): 2e-10%2C 59.42 id in 69 aa	gene	gene1030	http://www.ncbi.nlm.nih.gov/gene/?term=YE1029
YE1030	YE1030		YE1030	1148739	1149224	+	tRNA-specific adenosine deaminase		gene	gene1031	http://www.ncbi.nlm.nih.gov/gene/?term=YE1030
YE1031	YE1031		YE1031	1149388	1150848	-	transglycosylase	YfhD%3B uncharacterized member of the transglycosylase slt family%3B part of the rob operon%2C which plays a role in cellular resistance to antibiotics%2C bactericidal agents%2C and organic solvents%3B unknown function	gene	gene1032	http://www.ncbi.nlm.nih.gov/gene/?term=YE1031
YE1032	YE1032	purI	purI	1151163	1155053	+	phosphoribosylformylglycinamidine synthase	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis	gene	gene1033	http://www.ncbi.nlm.nih.gov/gene/?term=YE1032
YE1033	YE1033		YE1033	1155126	1155572	-	hypothetical protein	Similar in part to Yersinia pestis hypothetical protein Ypo2919 SWALL:Q8ZCQ3 (EMBL:AJ414154) (192 aa) fasta scores: E(): 6.9e-10%2C 30.66 38d in 150 aa	gene	gene1034	http://www.ncbi.nlm.nih.gov/gene/?term=YE1033
YE1035	YE1035		YE1035	1156693	1158144	+	two-component system sensor kinase		gene	gene1035	http://www.ncbi.nlm.nih.gov/gene/?term=YE1035
YE1036	YE1036		YE1036	1158229	1159230	+	hypothetical protein		gene	gene1036	http://www.ncbi.nlm.nih.gov/gene/?term=YE1036
YE1037	YE1037		YE1037	1159193	1160530	+	two-component system response regulator		gene	gene1037	http://www.ncbi.nlm.nih.gov/gene/?term=YE1037
YE1038	YE1038	nadE	nadE	1160791	1162413	+	NAD synthetase	NH(3)-dependent%3B catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers	gene	gene1038	http://www.ncbi.nlm.nih.gov/gene/?term=YE1038
YE1039	YE1039	glnB	glnB	1162428	1162766	+	nitrogen regulatory protein P-II 1	indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA	gene	gene1039	http://www.ncbi.nlm.nih.gov/gene/?term=YE1039
YE1040	YE1040		YE1040	1162967	1164262	-	integral membrane protein	Similar to several including: Escherichia coli hypothetical protein YhfT or b3377 SWALL:YHFT_ECOLI (SWALL:P45546) (434 aa) fasta scores: E(): 2.7e-118%2C74.65 38d in 434 aa and to Bacillus halodurans hypothetical protein Bh0589 SWALL:Q9KF96 (EMBL:AP001509) (429 aa) fasta scores: E(): 3.2e-37%2C 33.86 38d in 443 aa	gene	gene1040	http://www.ncbi.nlm.nih.gov/gene/?term=YE1040
YE1041	YE1041		YE1041	1164273	1164626	-	inner membrane protein	Highly similar to Escherichia coli hypothetical protein YhfU or b3378 SWALL:YHFU_ECOLI (SWALL:P45547) (130 aa) fasta scores: E(): 3.3e-31%2C 76.06 38d in 117 aa. Note the differing N-termini. Also similar to Bacillus halodurans hypothetical protein Bh0588 bh0588 SWALL:Q9KF97 (EMBL:AP001509) (119 aa) fasta scores: E(): 7.3e-13%2C 42.6 id in 115 aa	gene	gene1041	http://www.ncbi.nlm.nih.gov/gene/?term=YE1041
YE1042	YE1042		YE1042	1164629	1165516	-	hydrolase	phosphotriesterase homology protein%3B PhP%3B YhfV%3B member of a family of proteins related to phosphotriesterase (PTE)	gene	gene1042	http://www.ncbi.nlm.nih.gov/gene/?term=YE1042
YE1043	YE1043		YE1043	1165608	1166777	-	hypothetical protein	Similar to Escherichia coli hypothetical protein YhfX or b3381 SWALL:YHFX_ECOLI (SWALL:P45550) (387 aa) fasta scores: E(): 3e-85%2C 55.24 38d in 391 aa and to Bacillus halodurans hypothetical protein Bh0591 SWALL:Q9KF94 (EMBL:AP001509) (386 aa) fasta scores: E(): 7.9e-44%2C 36.62 38d in 385 aa	gene	gene1043	http://www.ncbi.nlm.nih.gov/gene/?term=YE1043
YE1044	YE1044		YE1044	1166896	1167276	-	hypothetical protein	Similar to several proteins of undefined function including: Escherichia coli hypothetical protein YhfY or b3382 SWALL:YHFY_ECOLI (SWALL:P45551) (120 aa) fasta scores: E(): 5.7e-20%2C 52.13 38d in 117 aa and to Haemophilus influenzae hypothetical protein Hi0487 SWALL:YHFY_HAEIN (SWALL:P44003) (125 aa) fasta scores: E(): 0.00014%2C 31.68 38d in 101 aa	gene	gene1044	http://www.ncbi.nlm.nih.gov/gene/?term=YE1044
YE1045	YE1045		YE1045	1167324	1168223	-	DNA-binding protein	Similar to Bacillus halodurans hypothetical protein Bh0586 SWALL:Q9KF99 (EMBL:AP001509) (306 aa) fasta scores: E(): 1.6e-27%2C 33.22 38d in 307 aa and%2C in part%2C to Escherichia coli hypothetical protein YhfZ or b3383 SWALL:YHFZ_ECOLI (SWALL:P45552) (273 aa) fasta scores: E(): 6.3e-56%2C 52.74 38d in 273 aa	gene	gene1045	http://www.ncbi.nlm.nih.gov/gene/?term=YE1045
YE1046	YE1046	fsrB	fsrB	1168487	1169677	-	nitric oxide dioxygenase	flavohemoprotein%3B catalyzes the formation of nitrate from nitric oxide%3B can also catalyze the reduction of dihydropteridine	gene	gene1046	http://www.ncbi.nlm.nih.gov/gene/?term=YE1046
YE1047	YE1047	glyA	glyA	1170064	1171317	+	serine hydroxymethyltransferase	catalyzes the reaction of glycine with 5%2C10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate	gene	gene1047	http://www.ncbi.nlm.nih.gov/gene/?term=YE1047
YE1049	YE1049	hcaT	hcaT	1171666	1172823	+	3-phenylpropionic acid transporter	putative transporter of 3-phenylpropionate across the inner membrane%3B member of the major facilitator superfamily of transporters	gene	gene1048	http://www.ncbi.nlm.nih.gov/gene/?term=YE1049
YE1050	YE1050		YE1050	1172820	1174031	-	stationary phase inducible protein CsiE		gene	gene1049	http://www.ncbi.nlm.nih.gov/gene/?term=YE1050
YE1051	YE1051		YE1051	1174255	1174929	+	hypothetical protein		gene	gene1050	http://www.ncbi.nlm.nih.gov/gene/?term=YE1051
YE1052	YE1052		YE1052	1174944	1175936	+	hypothetical protein		gene	gene1051	http://www.ncbi.nlm.nih.gov/gene/?term=YE1052
YE1054	YE1054	suhB	suhB	1176132	1176938	-	inositol monophosphatase		gene	gene1052	http://www.ncbi.nlm.nih.gov/gene/?term=YE1054
YE1055	YE1055		YE1055	1177057	1177830	+	SpoU family rRNA methylase		gene	gene1053	http://www.ncbi.nlm.nih.gov/gene/?term=YE1055
YE1056	YE1056		YE1056	1177987	1178481	+	DNA-binding transcriptional regulator IscR	regulates the expression of the iscRSUA operon	gene	gene1054	http://www.ncbi.nlm.nih.gov/gene/?term=YE1056
YE1057	YE1057	iscS	iscS	1178535	1179764	+	cysteine desulfurase	catalyzes the removal of elemental sulfur from cysteine to produce alanine%3B involved in NAD biosynthesis	gene	gene1055	http://www.ncbi.nlm.nih.gov/gene/?term=YE1057
YE1058	YE1058	nifU	nifU	1179795	1180181	+	scaffold protein		gene	gene1056	http://www.ncbi.nlm.nih.gov/gene/?term=YE1058
YE1059	YE1059	iscA	iscA	1180285	1180608	+	iron-sulfur cluster assembly protein	forms iron-sulfur clusters of ferredoxin [2FE-2S]%3B binds iron in the presence of the thioredoxin reductase system%3B forms homodimers and tetramers%3B similar to SufA protein	gene	gene1057	http://www.ncbi.nlm.nih.gov/gene/?term=YE1059
YE1060	YE1060	hscB	hscB	1180716	1181240	+	co-chaperone HscB	J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone%3B may function in biogenesis of iron-sulfur proteins	gene	gene1058	http://www.ncbi.nlm.nih.gov/gene/?term=YE1060
YE1061	YE1061	hscA	hscA	1181573	1183423	+	chaperone protein HscA	involved in the maturation of iron-sulfur cluster-containing proteins	gene	gene1059	http://www.ncbi.nlm.nih.gov/gene/?term=YE1061
YE1062	YE1062	fdx	fdx	1183426	1183761	+	ferredoxin		gene	gene1060	http://www.ncbi.nlm.nih.gov/gene/?term=YE1062
YE1063	YE1063		YE1063	1183980	1184180	+	hypothetical protein		gene	gene1061	http://www.ncbi.nlm.nih.gov/gene/?term=YE1063
YE1064	YE1064	pepB	pepB	1184400	1185683	+	aminopeptidase B	catalyzes the removal of an N-terminal amino acid from a peptide or arylamide	gene	gene1062	http://www.ncbi.nlm.nih.gov/gene/?term=YE1064
YE1065	YE1065		YE1065	1185919	1186743	+	enhanced serine sensitivity protein SseB	enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I	gene	gene1063	http://www.ncbi.nlm.nih.gov/gene/?term=YE1065
YE1066	YE1066		YE1066	1186779	1191815	+	hypothetical protein		gene	gene1064	http://www.ncbi.nlm.nih.gov/gene/?term=YE1066
YE1067	YE1067	pbpC	pbpC	1191865	1194204	+	penicillin-binding protein 1C	penicillin-insensitive transglycosylase/transpeptidase	gene	gene1065	http://www.ncbi.nlm.nih.gov/gene/?term=YE1067
YE1068	YE1068		YE1068	1194366	1196891	+	hypothetical protein		gene	gene1066	http://www.ncbi.nlm.nih.gov/gene/?term=YE1068
YE1069	YE1069	ndk	ndk	1197185	1197610	+	nucleoside diphosphate kinase	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate	gene	gene1067	http://www.ncbi.nlm.nih.gov/gene/?term=YE1069
YE1070	YE1070		YE1070	1197838	1199034	+	ribosomal RNA large subunit methyltransferase N	23S rRNA m2A2503 methyltransferase%3B methylates the C2 position of the A2530 nucleotide in 23S rRNA%3B may be involved in antibiotic resistance	gene	gene1068	http://www.ncbi.nlm.nih.gov/gene/?term=YE1070
YE1071	YE1071		YE1071	1199229	1199978	+	fimbrial biogenesis protein		gene	gene1069	http://www.ncbi.nlm.nih.gov/gene/?term=YE1071
YE1072	YE1072	yfgA	yfgA	1200016	1200984	+	cytoskeletal protein RodZ		gene	gene1070	http://www.ncbi.nlm.nih.gov/gene/?term=YE1072
YE1073	YE1073	ispG	ispG	1201105	1202229	+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	catalyzes the conversion of 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate%3B involved in isoprenoid synthesis	gene	gene1071	http://www.ncbi.nlm.nih.gov/gene/?term=YE1073
YE1074	YE1074	hisS	hisS	1202445	1203719	+	histidyl-tRNA synthetase	catalyzes a two-step reaction%2C first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class II aminoacyl-tRNA synthetase%3B forms homodimers%3B some organisms have a paralogous gene%2C hisZ%2C that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG	gene	gene1072	http://www.ncbi.nlm.nih.gov/gene/?term=YE1074
YE1075	YE1075	yfgM	yfgM	1203733	1204353	+	hypothetical protein		gene	gene1073	http://www.ncbi.nlm.nih.gov/gene/?term=YE1075
YE1076	YE1076	yfgL	yfgL	1204365	1205546	+	outer membrane protein assembly complex subunit YfgL	with YaeT%2C YfiO%2C and NlpB forms a complex involved in outer membrane protein biogenesis	gene	gene1074	http://www.ncbi.nlm.nih.gov/gene/?term=YE1076
YE1077	YE1077	engA	engA	1205746	1207230	+	GTP-binding protein EngA	EngA%3B essential Neisserial GTPase%3B synchronizes cellular events by interacting with multiple targets with tandem G-domains%3B overexpression in Escherichia coli suppresses rrmJ mutation%3B structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains	gene	gene1075	http://www.ncbi.nlm.nih.gov/gene/?term=YE1077
YE1078	YE1078		YE1078	1207339	1208295	+	hypothetical protein		gene	gene1076	http://www.ncbi.nlm.nih.gov/gene/?term=YE1078
YE1079	YE1079		YE1079	1208324	1208548	+	hypothetical protein		gene	gene1077	http://www.ncbi.nlm.nih.gov/gene/?term=YE1079
YE1080	YE1080	xseA	xseA	1208595	1209971	-	exodeoxyribonuclease VII large subunit	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides	gene	gene1078	http://www.ncbi.nlm.nih.gov/gene/?term=YE1080
YE1081	YE1081	guaB	guaB	1210140	1211603	+	inosine 5'-monophosphate dehydrogenase	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate	gene	gene1079	http://www.ncbi.nlm.nih.gov/gene/?term=YE1081
YE1082	YE1082	guaA	guaA	1211788	1213365	+	GMP synthase	contains glutamine-hydrolyzing domain and glutamine amidotransferase%3B GMP-binding domain%3B functions to produce GMP from XMP in the IMP pathway	gene	gene1080	http://www.ncbi.nlm.nih.gov/gene/?term=YE1082
YE1083	YE1083		YE1083	1213613	1215490	+	hypothetical protein	Similar in part to Yersinia pestis hypothetical protein Ypo0466 SWALL:Q8ZIM9 (EMBL:AJ414142) (815 aa) fasta scores: E(): 0.019%2C 21.42 38d in 280 aa	gene	gene1081	http://www.ncbi.nlm.nih.gov/gene/?term=YE1083
YE1084	YE1084		YE1084	1215721	1216287	+	hypothetical protein	Similar in part to Ralstonia solanacearum putative transmembrane dehydrogenase Rsc0770 or Rs05084 SWALL:Q8Y1C0 (EMBL:AL646061) (163 aa) fasta scores: E(): 1.5e-13%2C 40.26 38d in 154 aa	gene	gene1082	http://www.ncbi.nlm.nih.gov/gene/?term=YE1084
YE1085	YE1085		YE1085	1216305	1217924	+	hypothetical protein	Similar to Ralstonia solanacearum putative transmembrane dehydrogenase Rsc0771 or Rs05083 SWALL:Q8Y1B9 (EMBL:AL646061) (539 aa) fasta scores: E(): 2.6e-152%2C 72.42 38d in 533 aa and to Gluconobacter oxydans solbitol dehydrogenase large subunit SldL SWALL:Q9LBK8 (EMBL:AB039821) (545 aa) fasta scores: E(): 2.3e-96%2C49.17 38d in 547 aa	gene	gene1083	http://www.ncbi.nlm.nih.gov/gene/?term=YE1085
YE1086	YE1086		YE1086	1217941	1219194	+	cytochrome C	Similar to many including: Gluconobacter oxydans alcohol dehydrogenase cytochrome C subunit precursor AdhB SWALL:CYCA_GLUOX (SWALL:Q47945) (478 aa) fasta scores: E(): 3.5e-43%2C 37.85 38d in 428 aa and to Pantoea agglomerans cytochrome C subunit II SWALL:Q9RH53 (EMBL:AF068066) (470 aa) fasta scores: E(): 4.3e-66%2C42.25 38d in 426 aa	gene	gene1084	http://www.ncbi.nlm.nih.gov/gene/?term=YE1086
YE1087	YE1087		YE1087	1219265	1219705	-	acetyltransferase	Similar to several including: Escherichia coli hypothetical acetyltransferase YiaC or b3550 SWALL:YIAC_ECOLI (SWALL:P37664) (146 aa) fasta scores: E(): 4.1e-05%2C 33.88 38d in 121 aa and to Vibrio cholerae hypothetical protein Vca0382 SWALL:Q9KMH2 (EMBL:AE004374) (141 aa) fasta scores: E(): 5.4e-15%2C 36.02 38d in 136 aa	gene	gene1085	http://www.ncbi.nlm.nih.gov/gene/?term=YE1087
YE1088	YE1088	thiD	thiD	1219890	1220690	+	phosphomethylpyrimidine kinase	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine	gene	gene1087	http://www.ncbi.nlm.nih.gov/gene/?term=YE1088
YE1089	YE1089		YE1089	1220810	1221574	-	hypothetical protein		gene	gene1088	http://www.ncbi.nlm.nih.gov/gene/?term=YE1089
YE1091	YE1091		YE1091	1221970	1222500	+	hypothetical protein		gene	gene1089	http://www.ncbi.nlm.nih.gov/gene/?term=YE1091
YE1092	YE1092	gutQ	gutQ	1222580	1223545	-	D-arabinose 5-phosphate isomerase	catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate	gene	gene1090	http://www.ncbi.nlm.nih.gov/gene/?term=YE1092
YE1093	YE1093	srlR	srlR	1223538	1224308	-	DNA-binding transcriptional repressor SrlR	regulates genes involved in glucitol utilization	gene	gene1091	http://www.ncbi.nlm.nih.gov/gene/?term=YE1093
YE1094	YE1094	gutM	gutM	1224393	1224758	-	DNA-binding transcriptional activator GutM	regulator for glucitol utilization	gene	gene1092	http://www.ncbi.nlm.nih.gov/gene/?term=YE1094
YE1095	YE1095	gutD	gutD	1225058	1225894	-	sorbitol-6-phosphate dehydrogenase	catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate	gene	gene1093	http://www.ncbi.nlm.nih.gov/gene/?term=YE1095
YE1096	YE1096	gutB	gutB	1225970	1226332	-	PTS system glucitol/sorbitol-specific transporter subunit IIA	phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel	gene	gene1094	http://www.ncbi.nlm.nih.gov/gene/?term=YE1096
YE1097	YE1097	gutE	gutE	1226398	1227423	-	PTS system glucitol/sorbitol-specific transporter subunit IIBC	Similar to Escherichia coli pts system%2Cglucitol/sorbitol-specific IIBC component SrlE or GutE or b2703 SWALL:PTHB_ECOLI (SWALL:P56580) (319 aa) fasta scores: E(): 1.5e-59%2C 79.52 38d in 337 aa and to Erwinia amylovora PTS system%2C glucitol/sorbitol-specific IIBC component SrlE SWALL:PTHB_ERWAM (SWALL:O32522) (333 aa) fasta scores: E(): 4.8e-96%2C 78.06 38d in 342 aa	gene	gene1095	http://www.ncbi.nlm.nih.gov/gene/?term=YE1097
YE1098	YE1098	gutA	gutA	1227459	1228007	-	PTS system glucitol/sorbitol-specific transporter subunit IIc2	Similar to Escherichia coli pts system%2Cglucitol/sorbitol-specific IIC2 component SrlA or GutA or sbl or b2702 SWALL:PTHC_ECOLI (SWALL:P56579) (187 aa) fasta scores: E(): 2e-65%2C 90.11 38d in 182 aa%2C and to Erwinia amylovora pts system%2C glucitol/sorbitol-specific IIC2 component SrlA SWALL:PTHC_ERWAM (SWALL:O32521) (182 aa) fasta scores: E(): 1.4e-64%2C 87.36 38d in 182 aa	gene	gene1096	http://www.ncbi.nlm.nih.gov/gene/?term=YE1098
YE1099	YE1099		YE1099	1228386	1229276	-	lipid kinase	cytosolic protein with phosphatidylglycerol kinase activity%3B undetermined physiological role	gene	gene1097	http://www.ncbi.nlm.nih.gov/gene/?term=YE1099
YE1100	YE1100		YE1100	1229759	1231162	-	protease		gene	gene1098	http://www.ncbi.nlm.nih.gov/gene/?term=YE1100
YE1101	YE1101		YE1101	1231365	1231801	+			gene	gene1099	http://www.ncbi.nlm.nih.gov/gene/?term=YE1101
YE1102	YE1102		YE1102	1231798	1232136	+	DNA-binding protein	Similar in part to Vibrio cholerae transcriptional regulator%2C putative Vc0814 SWALL:Q9KTS4 (EMBL:AE004166) (159 aa) fasta scores: E(): 9.5e-10%2C 38.83 38d in 103 aa	gene	gene1100	http://www.ncbi.nlm.nih.gov/gene/?term=YE1102
YE1103	YE1103		YE1103	1232215	1232553	-	hypothetical protein		gene	gene1101	http://www.ncbi.nlm.nih.gov/gene/?term=YE1103
YE1104	YE1104	baeR	baeR	1232632	1233351	-	DNA-binding transcriptional regulator BaeR	response regulator in two-component regulatory system with BaeS%3B regulator of RNA synthesis%2C flagellar biosynthesis%2C chemotaxis and transport	gene	gene1102	http://www.ncbi.nlm.nih.gov/gene/?term=YE1104
YE1105	YE1105	baeS	baeS	1233360	1234736	-	signal transduction histidine-protein kinase BaeS		gene	gene1103	http://www.ncbi.nlm.nih.gov/gene/?term=YE1105
YE1106	YE1106	yegB	yegB	1234753	1236132	-	multidrug efflux system protein MdtE		gene	gene1104	http://www.ncbi.nlm.nih.gov/gene/?term=YE1106
YE1107	YE1107	yegO	yegO	1236489	1239563	-	multidrug efflux system subunit MdtC	Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC%3B confers resistance against novobiocin and deoxycholate	gene	gene1105	http://www.ncbi.nlm.nih.gov/gene/?term=YE1107
YE1108	YE1108	yegN	yegN	1239560	1242703	-	multidrug efflux system subunit MdtB	Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate	gene	gene1106	http://www.ncbi.nlm.nih.gov/gene/?term=YE1108
YE1109	YE1109	yegM	yegM	1242703	1244034	-	multidrug efflux system subunit MdtA	Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate	gene	gene1107	http://www.ncbi.nlm.nih.gov/gene/?term=YE1109
YE1110	YE1110		YE1110	1244217	1244483	-	hypothetical protein	Similar to Vibrio cholerae hypothetical protein Vca0323 SWALL:Q9KML4 (EMBL:AE004370) (98 aa) fasta scores: E(): 1.7e-09%2C 40.44 38d in 89 aa and to Zymomonas mobilis hypothetical 10.4 kDa protein SWALL:Q9REP2 (EMBL:AF213822) (89 aa) fasta scores: E(): 6.3e-08%2C 38.71 id in 93 aa	gene	gene1108	http://www.ncbi.nlm.nih.gov/gene/?term=YE1110
YE1111	YE1111		YE1111	1244653	1245684	-	fimbrial subunit	Similar in the C-terminus to several fimbrial proteins including: Photorhabdus luminescens PhfB SWALL:Q9AI15 (EMBL:AF288077) (337 aa) fasta scores: E(): 4.8e-07%2C 29.83 38d in 248 aa and Salmonella typhimurium fimbrial subunit BcfF or Stm0026 SWALL:Q9X608 (EMBL:AF130422) (172 aa) fasta scores: E(): 7.2e-05%2C32.41 38d in 145 aa	gene	gene1109	http://www.ncbi.nlm.nih.gov/gene/?term=YE1111
YE1112	YE1112		YE1112	1245760	1248333	-	outer membrane usher protein	Similar to Salmonella typhimurium outer membrane usher protein LpfC precursor or stm3638 SWALL:LPFC_SALTY (SWALL:P43662) (842 aa) fasta scores: E(): 8.1e-133%2C47.13 38d in 855 aa and to Escherichia coli O157:H7 putative outer membrane protein YraJ or Z4500 or ecs4022 SWALL:Q8XAB2 (EMBL:AE005543) (838 aa) fasta scores: E(): 1.7e-128%2C 44.98 38d in 858 aa	gene	gene1110	http://www.ncbi.nlm.nih.gov/gene/?term=YE1112
YE1113	YE1113		YE1113	1248296	1248976	-	fimbrial chaperone protein	Similar to Salmonella typhimurium chaperone protein LpfB precursor or Stm3639 SWALL:LPFB_SALTY (SWALL:P43661) (232 aa) fasta scores: E(): 7.8e-35%2C 46.9 38d in 226 aa and to Escherichia coli O157:H7 putative fimbrial chaperone Z4969 or Ecs4430 SWALL:Q8X5K6 (EMBL:AE005581) (232 aa) fasta scores: E(): 3.2e-36%2C 48.67 38d in 226 aa	gene	gene1111	http://www.ncbi.nlm.nih.gov/gene/?term=YE1113
YE1114	YE1114		YE1114	1249118	1249645	-	fimbrial protein	Similar to Salmonella typhimurium long polar fimbria protein A precursor LpfA or Stm3640 SWALL:LPFA_SALTY (SWALL:P43660) (178 aa) fasta scores: E(): 1.3e-10%2C 32.43 38d in 185 aa%2C Erwinia aphidicola EafA SWALL:Q9WXD4 (EMBL:AB019396) (175 aa) fasta scores: E(): 1.9e-05%2C 29.94 38d in 177 aa%2C and to Escherichia coli FimG protein or b4319 SWALL:FIMG_ECOLI (SWALL:P08190) (167 aa) fasta scores: E(): 0.00067%2C 23.25 38d in 172 aa	gene	gene1112	http://www.ncbi.nlm.nih.gov/gene/?term=YE1114
YE1115	YE1115		YE1115	1250466	1251818	-	chaperone		gene	gene1113	http://www.ncbi.nlm.nih.gov/gene/?term=YE1115
YE1116	YE1116		YE1116	1251912	1255316	-	sensor protein	contains a MASE1 (Membrane-Associated Sensor) domain%3B potentially involved in signal transduction	gene	gene1114	http://www.ncbi.nlm.nih.gov/gene/?term=YE1116
YE1117	YE1117	mgtE	mgtE	1255568	1257043	-	divalent cation transport protein		gene	gene1115	http://www.ncbi.nlm.nih.gov/gene/?term=YE1117
YE1118	YE1118	yfgG	yfgG	1257091	1257282	-	hypothetical protein		gene	gene1116	http://www.ncbi.nlm.nih.gov/gene/?term=YE1118
YE1119	YE1119	ppx	ppx	1257548	1259038	-	exopolyphosphatase		gene	gene1117	http://www.ncbi.nlm.nih.gov/gene/?term=YE1119
YE1120	YE1120	ppk	ppk	1259121	1261190	-	polyphosphate kinase	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate	gene	gene1118	http://www.ncbi.nlm.nih.gov/gene/?term=YE1120
YE1122	YE1122	trp1400B	trp1400B	1261887	1262681	-	IS1400 transposase B	Previously sequenced as Yersinia enterocolitica IS1400 transposase B Trp1400B SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): 6.8e-120%2C 98.98 38d in 264 aa. Also similar to many others e.g. Yersinia pestis putative transposase Ypcd1.94 SWALL:Q9RI05 (EMBL:AL117189) (269 aa) fasta scores: E(): 6.1e-38%2C 44.444 38d in 252 aa. Note the differing predicted start codons for this CDS compared with that previously published.	gene	gene1119	http://www.ncbi.nlm.nih.gov/gene/?term=YE1122
YE1123	YE1123	trp1400A	trp1400A	1262732	1263022	-	IS1400 transposase A		gene	gene1120	http://www.ncbi.nlm.nih.gov/gene/?term=YE1123
YE1123A	YE1123A		YE1123A	1263965	1264390	+	hypothetical protein	Similar to Salmonella typhi hypothetical periplasmic protein Sty1364 SWALL:Q8Z7B8 (EMBL:AL627270) (141 aa) fasta scores: E(): 6.3e-30%2C 59.25 38d in 135 aa and in part this protein is weakly similar to Bordetella pertussis pertussis toxin subunit 3 precursor PtxC SWALL:TOX3_BORPE (SWALL:P04979) (227 aa) fasta scores: E(): 0.94%2C 22.88 38d in 118 aa	gene	gene1121	http://www.ncbi.nlm.nih.gov/gene/?term=YE1123A
YE1124	YE1124	speG	speG	1264625	1265170	-	spermidine acetyltransferase		gene	gene1122	http://www.ncbi.nlm.nih.gov/gene/?term=YE1124
YE1125	YE1125	purN	purN	1265306	1265944	-	phosphoribosylglycinamide formyltransferase	glycinamide ribonucleotide transformylase%3B GAR Tfase%3B catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate%3B PurN requires formyl folate for the reaction unlike PurT which uses formate	gene	gene1123	http://www.ncbi.nlm.nih.gov/gene/?term=YE1125
YE1127	YE1127	purI	purI	1266236	1267279	-	phosphoribosylaminoimidazole synthetase	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis	gene	gene1124	http://www.ncbi.nlm.nih.gov/gene/?term=YE1127
YE1128	YE1128	upp	upp	1267515	1268141	+	uracil phosphoribosyltransferase	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate	gene	gene1125	http://www.ncbi.nlm.nih.gov/gene/?term=YE1128
YE1129	YE1129	uraA	uraA	1268234	1269523	+	uracil transporter	Similar to Escherichia coli%2C and Escherichia coli O157:H7 uracil permease UraA or b2497 or z3760 or ecs3359 SWALL:URAA_ECOLI (SWALL:P33780) (429 aa) fasta scores: E(): 3.8e-133%2C 89.62 38d in 424 aa and to Salmonella typhi uracil permease Sty2738 SWALL:Q8Z4R3 (EMBL:AL627275) (429 aa) fasta scores: E(): 6.5e-133%2C 88.65 38d in 423 aa	gene	gene1126	http://www.ncbi.nlm.nih.gov/gene/?term=YE1129
YE1130	YE1130		YE1130	1269637	1270356	+	DNA replication initiation factor	controls initiation of DNA replication by inhibiting re-initiation of replication%2C promotes hydrolysis of DnaA-bound ATP	gene	gene1127	http://www.ncbi.nlm.nih.gov/gene/?term=YE1130
YE1131	YE1131	yfgD	yfgD	1270404	1270757	-	arsenate reductase		gene	gene1128	http://www.ncbi.nlm.nih.gov/gene/?term=YE1131
YE1132	YE1132		YE1132	1270769	1272217	-	hypothetical protein		gene	gene1129	http://www.ncbi.nlm.nih.gov/gene/?term=YE1132
YE1133	YE1133	perM	perM	1272755	1273819	+	hypothetical protein		gene	gene1130	http://www.ncbi.nlm.nih.gov/gene/?term=YE1133
YE1134	YE1134		YE1134	1274153	1275172	-	transposase for IS1667	Similar to many including: Pseudomonas putida transposase TnpA1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 2.7e-56%2C 44.89 38d in 343 aa and to Yersinia enterocolitica IS1328 transposase Trp1328 SWALL:Q9RIG6 (EMBL:AJ132945) (334 aa) fasta scores: E(): 5.3e-50%2C 41.86 38d in 332 aa	gene	gene1131	http://www.ncbi.nlm.nih.gov/gene/?term=YE1134
YE1135	YE1135	bcp	bcp	1275468	1275938	-	thioredoxin-dependent thiol peroxidase	bacterioferritin comigratory protein%3B thiol peroxidase%3B thioredoxin-dependent%3B hydroperoxide peroxidase%3B in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide%3B contains an active site cysteine	gene	gene1132	http://www.ncbi.nlm.nih.gov/gene/?term=YE1135
YE1136	YE1136	gcvR	gcvR	1275941	1276510	-	glycine cleavage system transcriptional repressor	negative transcriptional regulator of the gcvTHP operon	gene	gene1133	http://www.ncbi.nlm.nih.gov/gene/?term=YE1136
YE1137	YE1137	dapA	dapA	1276675	1277556	+	dihydrodipicolinate synthase	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis	gene	gene1134	http://www.ncbi.nlm.nih.gov/gene/?term=YE1137
YE1138	YE1138	dapX	dapX	1277573	1278631	+	lipoprotein		gene	gene1135	http://www.ncbi.nlm.nih.gov/gene/?term=YE1138
YE1140	YE1140	purC	purC	1278916	1279629	+	phosphoribosylaminoimidazole-succinocarboxamide synthase	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis%3B SAICAR synthase	gene	gene1136	http://www.ncbi.nlm.nih.gov/gene/?term=YE1140
YE1141	YE1141		YE1141	1280059	1280823	+	hypothetical protein		gene	gene1137	http://www.ncbi.nlm.nih.gov/gene/?term=YE1141
YE1142	YE1142	yeaL	yeaL	1280961	1281413	+	hypothetical protein		gene	gene1138	http://www.ncbi.nlm.nih.gov/gene/?term=YE1142
YE1143	YE1143		YE1143	1281445	1283478	+	acetyltransferase		gene	gene1139	http://www.ncbi.nlm.nih.gov/gene/?term=YE1143
YE1144	YE1144		YE1144	1283562	1284197	+	esterase YpfH	Displays esterase activity toward palmitoyl-CoA and pNP-butyrate	gene	gene1140	http://www.ncbi.nlm.nih.gov/gene/?term=YE1144
YE1145	YE1145		YE1145	1284224	1284418	-	hypothetical protein		gene	gene1141	http://www.ncbi.nlm.nih.gov/gene/?term=YE1145
YE1146	YE1146		YE1146	1284453	1285157	-	carboxypeptidase		gene	gene1142	http://www.ncbi.nlm.nih.gov/gene/?term=YE1146
YE1147	YE1147	dapE	dapE	1285154	1286281	-	succinyl-diaminopimelate desuccinylase	dapE-encoded N-succinyl-L%2CL-diaminopimelic acid desuccinylase (DapE)%2C catalyzes the hydrolysis of N-succinyl-L%2CLdiaminopimelate L%2CL-SDAP to L%2CL-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.	gene	gene1143	http://www.ncbi.nlm.nih.gov/gene/?term=YE1147
YE1148	YE1148		YE1148	1286283	1286705	-	hypothetical protein		gene	gene1144	http://www.ncbi.nlm.nih.gov/gene/?term=YE1148
YE1149	YE1149		YE1149	1286868	1287341	-	hypothetical protein		gene	gene1145	http://www.ncbi.nlm.nih.gov/gene/?term=YE1149
YE1150	YE1150		YE1150	1287801	1289015	-	hypothetical protein	no significant database hits	gene	gene1146	http://www.ncbi.nlm.nih.gov/gene/?term=YE1150
YE1151	YE1151		YE1151	1289613	1292744	-	aminoglycoside/multidrug efflux system		gene	gene1147	http://www.ncbi.nlm.nih.gov/gene/?term=YE1151
YE1152	YE1152		YE1152	1293154	1293432	+	hypothetical protein		gene	gene1148	http://www.ncbi.nlm.nih.gov/gene/?term=YE1152
YE1153	YE1153	narP	narP	1293471	1294100	-	nitrate/nitrite response regulator protein NarP		gene	gene1149	http://www.ncbi.nlm.nih.gov/gene/?term=YE1153
YE1154	YE1154	napF	napF	1294605	1295108	+	ferredoxin-type protein NapF		gene	gene1150	http://www.ncbi.nlm.nih.gov/gene/?term=YE1154
YE1155	YE1155	napD	napD	1295098	1295364	+	assembly protein for periplasmic nitrate reductase		gene	gene1151	http://www.ncbi.nlm.nih.gov/gene/?term=YE1155
YE1156	YE1156	napA	napA	1295361	1297856	+	nitrate reductase catalytic subunit	periplasmic%3B catalytic subunit%3B with NapBC catalyzes the reduction of nitrate to nitrite%3B NapAB receives electrons from NapC	gene	gene1152	http://www.ncbi.nlm.nih.gov/gene/?term=YE1156
YE1157	YE1157	napB	napB	1297939	1298394	+	citrate reductase cytochrome c-type subunit	small subunit of periplasmic nitrate reductase%3B receives electrons from the membrane-bound NapC and passes them to NapA	gene	gene1153	http://www.ncbi.nlm.nih.gov/gene/?term=YE1157
YE1158	YE1158	napC	napC	1298422	1299021	+	cytochrome c-type protein NapC	with NapABDFGH functions as a nitrate reductase%3B NapC functions as an electron shuttle between NapAB and NapGH or quinone	gene	gene1154	http://www.ncbi.nlm.nih.gov/gene/?term=YE1158
YE1159	YE1159		YE1159	1299175	1299426	+	hypothetical protein	Similar to seveal including: Escherichia coli Orf44 protein SWALL:Q9S122 (EMBL:AB024946) (83 aa) fasta scores: E(): 3.8e-26%2C 79.51 38d in 83 aa and to Escherichia coli IncF plasmid RepFIB replicon SWALL:Q60256 (EMBL:M26308) (83 aa) fasta scores: E(): 4.5e-26%2C 79.51 38d in 83 aa%2Cand to Salmonella typhimurium putative cytoplasmic protein Stm1551 SWALL:Q8ZPF8 (EMBL:AE008767) (82 aa) fasta scores: E(): 5.8e-15%2C 55.26 38d in 76 aa	gene	gene1155	http://www.ncbi.nlm.nih.gov/gene/?term=YE1159
YE1160	YE1160		YE1160	1299423	1299710	+	hypothetical protein	Similar to Escherichia coli hypothetical RelE protein or b1563 SWALL:RELE_ECOLI (SWALL:P07008) (95 aa) fasta scores: E(): 2.5e-16%2C 55.31 38d in 94 aa%2CEscherichia coli Orf43 protein SWALL:Q9S123 (EMBL:AB024946) (95 aa) fasta scores: E(): 2.2e-28%2C 81.05 id in 95 aa%2C and to Escherichia coli hypothetical RelE-like protein SWALL:RELX_ECOLI (SWALL:Q60228) (95 aa) fasta scores: E(): 7e-27%2C 77.89 38d in 95 aa	gene	gene1156	http://www.ncbi.nlm.nih.gov/gene/?term=YE1160
YE1161	YE1161		YE1161	1299739	1300314	+	hypothetical protein		gene	gene1157	http://www.ncbi.nlm.nih.gov/gene/?term=YE1161
YE1162	YE1162	maeB	maeB	1300535	1302814	+	malic enzyme	NADP-dependent%3B catalyzes the oxidative decarboxylation of malate to form pyruvate%3B decarboxylates oxaloacetate	gene	gene1158	http://www.ncbi.nlm.nih.gov/gene/?term=YE1162
YE1163	YE1163		YE1163	1303231	1304250	-	transposase for IS1667	Similar to many including: Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 5.3e-56%2C 45.93 38d in 344 aa and to Yersinia enterocolitica IS1328 transposase Trp1328 SWALL:Q9RIG6 (EMBL:AJ132945) (334 aa) fasta scores: E(): 1.2e-49%2C 42.16 38d in 332 aa	gene	gene1159	http://www.ncbi.nlm.nih.gov/gene/?term=YE1163
YE1165	YE1165		YE1165	1304987	1305673	+	LuxR family transcriptional regulator	Similar to several including: Salmonella typhimurium secretion system regulatory protein SsrB SWALL:O54305 (EMBL:Z95891) (193 aa) fasta scores: E(): 1.5e-05%2C 30.46 38d in 174 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 regulator of fimbriae protein FimZ or b0535 or z0693 or ecs0597 SWALL:FIMZ_ECOLI (SWALL:P21502) (210 aa) fasta scores: E(): 7.1e-05%2C 27.51 id in 189 aa	gene	gene1160	http://www.ncbi.nlm.nih.gov/gene/?term=YE1165
YE1166	YE1166		YE1166	1305680	1306582	-	LysR family transcriptional regulator	Similar to many utative transcriptional regulators including: Salmonella typhimurium LysR family YbdO or Stm0606 SWALL:Q8ZR23 (EMBL:AE008724) (300 aa) fasta scores: E(): 4.4e-12%2C 23.25 38d in 301 aa and to Salmonella typhimurium probable activator protein in leuABCD operon LeuO or Stm0115 SWALL:LEUO_SALTY (SWALL:P46924) (314 aa) fasta scores: E(): 2e-07%2C 22.42 id in 281 aa	gene	gene1161	http://www.ncbi.nlm.nih.gov/gene/?term=YE1166
YE1167	YE1167		YE1167	1306694	1307152	-	hypothetical protein		gene	gene1162	http://www.ncbi.nlm.nih.gov/gene/?term=YE1167
YE1168	YE1168	hemF	hemF	1307152	1308078	-	coproporphyrinogen III oxidase	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis	gene	gene1163	http://www.ncbi.nlm.nih.gov/gene/?term=YE1168
YE1169	YE1169		YE1169	1308309	1308734	+	acetyltransferase		gene	gene1164	http://www.ncbi.nlm.nih.gov/gene/?term=YE1169
YE1170	YE1170		YE1170	1308992	1310110	+	integrase/recombinase protein	Similar%2C at least in parts%2C to Escherichia coli shufflon-specific DNA recombinase Rci SWALL:RCI1_ECOLI (SWALL:P10487) (384 aa) fasta scores: E(): 4.7e-07%2C 35.71 id in 322 aa and to Ralstonia solanacearum putative integrase/recombinase protein Rsc1554 or Rs05241 SWALL:Q8XZ52 (EMBL:AL646065) (354 aa) fasta scores: E(): 1.8e-07%2C 34.21 38d in 380 aa	gene	gene1165	http://www.ncbi.nlm.nih.gov/gene/?term=YE1170
YE1171	YE1171		YE1171	1310337	1311557	+	maturase protein	Weakly similar in parts to Pseudomonas alcaligenes putative maturase/reverse transcriptase SWALL:Q9AMP0 (EMBL:AF323437) (407 aa) fasta scores: E(): 0.00065%2C23.24 38d in 185 aa	gene	gene1166	http://www.ncbi.nlm.nih.gov/gene/?term=YE1171
YE1172	YE1172		YE1172	1311562	1313568	+	DNA-binding protein	Weakly similar in parts to Synechocystis sp. hypothetical protein Sll1503 SWALL:P72998 (EMBL:D90902) (508 aa) fasta scores: E(): 4.5e-10%2C 26.31 38d in 323 aa	gene	gene1167	http://www.ncbi.nlm.nih.gov/gene/?term=YE1172
YE1175	YE1175		YE1175	1314461	1315768	-	hypothetical protein	Similar to Caulobacter crescentus hypothetical protein Cc2770 cc2770 SWALL:Q9A4R0 (EMBL:AE005942) (435 aa) fasta scores: E(): 1.9e-65%2C 42.55 38d in 423 aa%2C and to Erwinia amylovora hypothetical 47.8 kDa protein SWALL:Q9F814 (EMBL:AF264948) (427 aa) fasta scores: E(): 7.1e-20%2C 32.62 38d in 426 aa	gene	gene1168	http://www.ncbi.nlm.nih.gov/gene/?term=YE1175
YE1175A	YE1175A		YE1175A	1315768	1316175	-	Cro/CI family transcriptional regulator	Similar to Caulobacter crescentus transcriptional regulator%2C Cro/CI family Cc2771 SWALL:Q9A4Q9 (EMBL:AE005942) (119 aa) fasta scores: E(): 5.7e-06%2C 34.9 id in 106 aa	gene	gene1169	http://www.ncbi.nlm.nih.gov/gene/?term=YE1175A
YE1177	YE1177		YE1177	1316984	1318384	-	conjugal transfer protein	Similar to Rhizobium sp. probable conjugal transfer protein TrbL or y4dC SWALL:TRBL_RHISN (SWALL:P55402) (391 aa) fasta scores: E(): 4.2e-16%2C 27.27 38d in 385 aa%2C and to Enterobacter aerogenes plasmid R751 conjugal transfer protein TrbL SWALL:P71187 (EMBL:U67194) (572 aa) fasta scores: E(): 9.9e-62%2C 50.46 38d in 432 aa	gene	gene1170	http://www.ncbi.nlm.nih.gov/gene/?term=YE1177
YE1178	YE1178		YE1178	1318588	1319367	-	conjugal transfer protein TrbJ	Similar to Rhizobium sp. probable conjugal transfer protein TrbJ or Y4dA SWALL:TRBJ_RHISN (SWALL:P55400) (267 aa) fasta scores: E(): 6.9e-06%2C 27 38d in 200 aa%2C and to Escherichia coli%2C Comamonas testosteroni TrbJ SWALL:P71185 (EMBL:U67194) (254 aa) fasta scores: E(): 6.5e-50%2C 60.87 id in 253 aa	gene	gene1171	http://www.ncbi.nlm.nih.gov/gene/?term=YE1178
YE1179	YE1179		YE1179	1319687	1319917	-	hypothetical protein	doubtful CDS with no significant database hits	gene	gene1172	http://www.ncbi.nlm.nih.gov/gene/?term=YE1179
YE1180	YE1180		YE1180	1320077	1320742	+	hypothetical protein	no significant database hits	gene	gene1173	http://www.ncbi.nlm.nih.gov/gene/?term=YE1180
YE1181	YE1181		YE1181	1320959	1321228	-	hypothetical protein	Similar to Xylella fastidiosa hypothetical protein Xf2075 SWALL:Q9PBR5 (EMBL:AE004023) (92 aa) fasta scores: E(): 1.1e-10%2C 42.85 38d in 77 aa and to Xanthomonas axonopodis hypothetical protein Xac2429 SWALL:AAM37280 (EMBL:AE011880) (92 aa) fasta scores: E(): 1.9e-10%2C 38.63 id in 88 aa	gene	gene1174	http://www.ncbi.nlm.nih.gov/gene/?term=YE1181
YE1182	YE1182		YE1182	1321502	1322389	-	plasmid-related transcriptional repressor protein	Similar to Escherichia coli plasmid TrfA transcriptional repressor protein SWALL:TRFA_ECOLI (SWALL:P07676) (382 aa) fasta scores: E(): 3.3e-06%2C 22.05 id in 263 aa and to Escherichia coli plasmid protein TrfA SWALL:Q52323 (EMBL:X00713) (285 aa) fasta scores: E(): 2.5e-06%2C 22.05 38d in 263 aa	gene	gene1175	http://www.ncbi.nlm.nih.gov/gene/?term=YE1182
YE1183	YE1183		YE1183	1322394	1322774	-	hypothetical protein	no significant database hits	gene	gene1176	http://www.ncbi.nlm.nih.gov/gene/?term=YE1183
YE1184	YE1184		YE1184	1322982	1323164	+			gene	gene1177	http://www.ncbi.nlm.nih.gov/gene/?term=YE1184
YE1185	YE1185	ygiW	ygiW	1323318	1323731	-	hypothetical protein		gene	gene1178	http://www.ncbi.nlm.nih.gov/gene/?term=YE1185
YE1186	YE1186	yfeY	yfeY	1324114	1324725	+	hypothetical protein		gene	gene1179	http://www.ncbi.nlm.nih.gov/gene/?term=YE1186
YE1187	YE1187		YE1187	1324901	1325806	+	hypothetical protein		gene	gene1180	http://www.ncbi.nlm.nih.gov/gene/?term=YE1187
YE1188	YE1188	nanA	nanA	1325879	1326769	-	N-acetylneuraminate lyase		gene	gene1181	http://www.ncbi.nlm.nih.gov/gene/?term=YE1188
YE1189	YE1189		YE1189	1326851	1327486	-	N-acetylmannosamine-6-phosphate 2-epimerase	Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate	gene	gene1182	http://www.ncbi.nlm.nih.gov/gene/?term=YE1189
YE1190	YE1190		YE1190	1327796	1328710	+	N-acetylmannosamine kinase	catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein	gene	gene1183	http://www.ncbi.nlm.nih.gov/gene/?term=YE1190
YE1191	YE1191		YE1191	1328792	1329202	+	hypothetical protein		gene	gene1184	http://www.ncbi.nlm.nih.gov/gene/?term=YE1191
YE1192	YE1192		YE1192	1329398	1330276	+	rpiR family transcriptional regulatory protein		gene	gene1185	http://www.ncbi.nlm.nih.gov/gene/?term=YE1192
YE1193	YE1193	nanT	nanT	1330685	1332157	+	sialic acid transporter		gene	gene1186	http://www.ncbi.nlm.nih.gov/gene/?term=YE1193
YE1194	YE1194	cysP	cysP	1332416	1333444	+	thiosulfate transporter subunit		gene	gene1187	http://www.ncbi.nlm.nih.gov/gene/?term=YE1194
YE1195	YE1195	cysT	cysT	1333444	1334280	+	sulfate/thiosulfate transporter subunit		gene	gene1188	http://www.ncbi.nlm.nih.gov/gene/?term=YE1195
YE1196	YE1196	cysW	cysW	1334280	1335155	+	sulfate/thiosulfate transporter permease	Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import	gene	gene1189	http://www.ncbi.nlm.nih.gov/gene/?term=YE1196
YE1197	YE1197	cysA	cysA	1335145	1336236	+	sulfate/thiosulfate transporter subunit		gene	gene1190	http://www.ncbi.nlm.nih.gov/gene/?term=YE1197
YE1198	YE1198	cysM	cysM	1336410	1337291	+	cysteine synthase B	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide	gene	gene1191	http://www.ncbi.nlm.nih.gov/gene/?term=YE1198
YE1199	YE1199		YE1199	1337339	1339294	-	ABC transporter ATP-binding protein		gene	gene1192	http://www.ncbi.nlm.nih.gov/gene/?term=YE1199
YE1200	YE1200		YE1200	1339325	1340533	-	HlyD family secretion protein		gene	gene1193	http://www.ncbi.nlm.nih.gov/gene/?term=YE1200
YE1201	YE1201		YE1201	1340722	1341405	+	two-component system response regulator		gene	gene1194	http://www.ncbi.nlm.nih.gov/gene/?term=YE1201
YE1202	YE1202		YE1202	1341431	1342798	+	two-component system sensor kinase		gene	gene1195	http://www.ncbi.nlm.nih.gov/gene/?term=YE1202
YE1203	YE1203		YE1203	1342839	1343636	-	transposase for insertion element IS1669	Similar to Shigella sonnei insertion element IS600 hypothetical protein SWALL:YIS2_SHISO (SWALL:P16940) (272 aa) fasta scores: E(): 5.9e-25%2C 37.4 38d in 270 aa%2CPseudomonas aeruginosa hypothetical protein Pa0257 SWALL:Q9I6N2 (EMBL:AE004463) (263 aa) fasta scores: E(): 8.6e-70%2C 66.16 38d in 263 aa and to Porphyromonas gingivalis transposase Orf2 SWALL:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 9.8e-27%2C 37.26 38d in 271 aa	gene	gene1196	http://www.ncbi.nlm.nih.gov/gene/?term=YE1203
YE1204	YE1204		YE1204	1343654	1344052	-	hypothetical protein	Similar to Yersinia pestis hypothetical protein Ypo2009A SWALL:Q8ZEY6 (EMBL:AJ414151) (104 aa) fasta scores: E(): 2e-30%2C 86.53 38d in 104 aa%2C and in part to Salmonella typhimurium putative cytoplasmic protein stm0948 SWALL:Q8ZQE1 (EMBL:AE008740) (133 aa) fasta scores: E(): 3.9e-16%2C 53 38d in 100 aa	gene	gene1197	http://www.ncbi.nlm.nih.gov/gene/?term=YE1204
YE1205	YE1205	crr	crr	1344156	1344665	-	PTS system glucose-specific transporter	functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system%3B functions in the transport and phosphorylation of glucose	gene	gene1198	http://www.ncbi.nlm.nih.gov/gene/?term=YE1205
YE1206	YE1206	ptsI	ptsI	1344714	1346441	-	phosphoenolpyruvate-protein phosphotransferase	Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system	gene	gene1199	http://www.ncbi.nlm.nih.gov/gene/?term=YE1206
YE1207	YE1207	hpr	hpr	1346489	1346746	-	PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr		gene	gene1200	http://www.ncbi.nlm.nih.gov/gene/?term=YE1207
YE1208	YE1208	cysK	cysK	1347198	1348166	-	cysteine synthase A	CysK%3B forms a complex with serine acetyltransferase CysE%3B functions in cysteine biosynthesis	gene	gene1201	http://www.ncbi.nlm.nih.gov/gene/?term=YE1208
YE1209	YE1209	cysZ	cysZ	1348362	1349033	-	sulfate transport protein CysZ	putative role in sulfur assimilation	gene	gene1202	http://www.ncbi.nlm.nih.gov/gene/?term=YE1209
YE1210	YE1210	zipA	zipA	1349310	1350332	+	cell division protein ZipA	interacts with cell division protein FitsZ and may be required to anchor septal ring structure	gene	gene1203	http://www.ncbi.nlm.nih.gov/gene/?term=YE1210
YE1211	YE1211	ligA	ligA	1350408	1352426	+	NAD-dependent DNA ligase LigA	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction%3B essential for DNA replication and repair of damaged DNA%3B similar to ligase LigB	gene	gene1204	http://www.ncbi.nlm.nih.gov/gene/?term=YE1211
YE1212	YE1212		YE1212	1352441	1352659	+	hypothetical protein		gene	gene1205	http://www.ncbi.nlm.nih.gov/gene/?term=YE1212
YE1213	YE1213		YE1213	1352849	1353190	-	hypothetical protein		gene	gene1206	http://www.ncbi.nlm.nih.gov/gene/?term=YE1213
YE1214	YE1214		YE1214	1353347	1353907	-	hypothetical protein		gene	gene1207	http://www.ncbi.nlm.nih.gov/gene/?term=YE1214
YE1215	YE1215	gltX	gltX	1354417	1355832	-	glutamyl-tRNA synthetase	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation	gene	gene1210	http://www.ncbi.nlm.nih.gov/gene/?term=YE1215
YE1217	YE1217	cru	cru	1357395	1358579	-	nucleoside permease		gene	gene1217	http://www.ncbi.nlm.nih.gov/gene/?term=YE1217
YE1219	YE1219	mntH	mntH	1358978	1360207	+	manganese transport protein MntH		gene	gene1218	http://www.ncbi.nlm.nih.gov/gene/?term=YE1219
YE1220	YE1220		YE1220	1360258	1360686	-	hypothetical protein		gene	gene1219	http://www.ncbi.nlm.nih.gov/gene/?term=YE1220
YE1221	YE1221		YE1221	1360857	1361846	-	ion channel protein		gene	gene1220	http://www.ncbi.nlm.nih.gov/gene/?term=YE1221
YE1222	YE1222	ipdC	ipdC	1362066	1363730	+	indole-3-pyruvate decarboxylase	Similar to Enterobacter cloacae indole-3-pyruvate decarboxylase involved in the production of the plant-like hormone indole-3-acetaldehyde (IAAld) IpdC SWALL:DCIP_ENTCL (SWALL:P23234) (552 aa) fasta scores: E(): 7.9e-113%2C 53.51 38d in 555 aa%2C and to Salmonella typhimurium putative indole-3-pyruvate decarboxylase IpD or Stm2405 SWALL:Q93IM7 (EMBL:AJ401270) (550 aa) fasta scores: E(): 3.2e-118%2C 56.18 38d in 550 aa	gene	gene1221	http://www.ncbi.nlm.nih.gov/gene/?term=YE1222
YE1223	YE1223		YE1223	1363702	1364589	-	LysR family transcriptional regulator		gene	gene1222	http://www.ncbi.nlm.nih.gov/gene/?term=YE1223
YE1224	YE1224		YE1224	1364691	1365167	+	hypothetical protein		gene	gene1223	http://www.ncbi.nlm.nih.gov/gene/?term=YE1224
YE1225	YE1225	glk	glk	1365353	1366324	+	glucokinase	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate	gene	gene1224	http://www.ncbi.nlm.nih.gov/gene/?term=YE1225
YE1226	YE1226		YE1226	1366581	1367825	-	membrane transport protein	Similar to many including: Escherichia coli hypothetical protein YhjX or b3547 SWALL:YHJX_ECOLI (SWALL:P37662) (402 aa) fasta scores: E(): 8.8e-65%2C 44.24 id in 391 aa%2C and to Salmonella typhi putative transmembrane transport protein Sty2820 SWALL:Q8Z4K9 (EMBL:AL627275) (398 aa) fasta scores: E(): 2.9e-32%2C29.56 38d in 389 aa	gene	gene1225	http://www.ncbi.nlm.nih.gov/gene/?term=YE1226
YE1227	YE1227		YE1227	1368049	1368789	-	two-component system response-regulator	Similar to many two-component system response-regulatory proteins including: Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR or Pa5261 SWALL:ALGR_PSEAE (SWALL:P26275) (248 aa) fasta scores: E(): 3.7e-11%2C 28.34 38d in 254 aa%2CEscherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YpdB or b2381 SWALL:YPDB_ECOLI (SWALL:P77742) (244 aa) fasta scores: E(): 6e-71%2C 74.19 id in 248 aa%2C and Bacillus subtilis autolysin response regulator LytT SWALL:P94514 (EMBL:Z75208) (241 aa) fasta scores: E(): 1.3e-25%2C 33.6 38d in 247 aa	gene	gene1226	http://www.ncbi.nlm.nih.gov/gene/?term=YE1227
YE1228	YE1228		YE1228	1368793	1370493	-	two-component system histidine kinase	Similar to many two-component system histidine kinases including: Fusobacterium nucleatum autolysin sensor kinase fn0220 SWALL:AAL94426 (EMBL:AE010534) (541 aa) fasta scores: E(): 3.2e-77%2C 42.08 38d in 537 aa%2C and to Staphylococcus aureus two-component sensor histidine kinase lyts or sav0260 or sa0250 or mw0236 SWALL:Q99WW3 (EMBL:AP003358) (584 aa) fasta scores: E(): 8.5e-46%2C30.01 38d in 573 aa	gene	gene1227	http://www.ncbi.nlm.nih.gov/gene/?term=YE1228
YE1229	YE1229		YE1229	1370664	1371911	-	hypothetical protein		gene	gene1228	http://www.ncbi.nlm.nih.gov/gene/?term=YE1229
YE1230	YE1230		YE1230	1372113	1372685	+	acetyltransferase	Similar to many including: Streptomyces coelicolor putative acetyltransferase Sco2876 or sce6.13 SWALL:Q9KZS5 (EMBL:AL353832) (208 aa) fasta scores: E(): 3.1e-11%2C32.04 38d in 181 aa and Bacillus halodurans ribosomal-protein-alanine N-acetyltransferase Bh0699 SWALL:Q9KF00 (EMBL:AP001509) (190 aa) fasta scores: E(): 5.6e-10%2C 29.89 38d in 184 aa	gene	gene1229	http://www.ncbi.nlm.nih.gov/gene/?term=YE1230
YE1231	YE1231		YE1231	1372817	1374052	+	aminotransferase		gene	gene1230	http://www.ncbi.nlm.nih.gov/gene/?term=YE1231
YE1232	YE1232		YE1232	1374220	1374744	+	B-type cytochrome		gene	gene1231	http://www.ncbi.nlm.nih.gov/gene/?term=YE1232
YE1233	YE1233		YE1233	1375159	1375590	-	hypothetical protein	Highly similar to Yersinia pestis hypothetical protein Ypo2973 SWALL:Q8ZCL0 (EMBL:AJ414154) (143 aa) fasta scores: E(): 1e-41%2C 82.39 38d in 142 aa. Also similar to Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YdcQ or b1438 or z2281 or ecs2042 SWALL:YDCQ_ECOLI (SWALL:P76107) (145 aa) fasta scores: E(): 5.1e-06%2C 26.86 38d in 134 aa	gene	gene1232	http://www.ncbi.nlm.nih.gov/gene/?term=YE1233
YE1234	YE1234		YE1234	1376102	1376773	+	lipoprotein		gene	gene1233	http://www.ncbi.nlm.nih.gov/gene/?term=YE1234
YE1235	YE1235		YE1235	1376803	1377159	+	lipoprotein		gene	gene1234	http://www.ncbi.nlm.nih.gov/gene/?term=YE1235
YE1236	YE1236		YE1236	1377156	1377812	+	lipoprotein		gene	gene1235	http://www.ncbi.nlm.nih.gov/gene/?term=YE1236
YE1236A	YE1236A		YE1236A	1378015	1378218	+			gene	gene1236	http://www.ncbi.nlm.nih.gov/gene/?term=YE1236A
YE1237	YE1237		YE1237	1378318	1378848	+	hypothetical protein		gene	gene1237	http://www.ncbi.nlm.nih.gov/gene/?term=YE1237
YE1238	YE1238	yfuD	yfuD	1378874	1379512	-	membrane transport protein	Similar to Yersinia enterocolitica hypothetical protein YfuD SWALL:Q9RIF0 (EMBL:Z47200) (212 aa) fasta scores: E(): 5.7e-78%2C 100 38d in 212 aa and to Escherichia coli%2C and Escherichia coli O157:H7 threonine efflux protein RhtC or b3823 or z5344 or ecs4753 SWALL:RHTC_ECOLI (SWALL:P27846) (206 aa) fasta scores: E(): 3.4e-15%2C 26.86 id in 201 aa	gene	gene1238	http://www.ncbi.nlm.nih.gov/gene/?term=YE1238
YE1239	YE1239	sfuC	sfuC	1379635	1380684	-	iron(III)-transport ATP-binding protein		gene	gene1239	http://www.ncbi.nlm.nih.gov/gene/?term=YE1239
YE1240	YE1240	sfuB	sfuB	1380681	1382267	-	iron(III)-transport system permease		gene	gene1240	http://www.ncbi.nlm.nih.gov/gene/?term=YE1240
YE1241	YE1241	sfuA	sfuA	1382354	1383370	-	iron(III)-binding periplasmic protein		gene	gene1241	http://www.ncbi.nlm.nih.gov/gene/?term=YE1241
YE1242	YE1242	mltB	mltB	1383664	1384758	+	murein hydrolase B	membrane-bound lytic murein transglycosylase B%3B catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan	gene	gene1242	http://www.ncbi.nlm.nih.gov/gene/?term=YE1242
YE1243	YE1243		YE1243	1384987	1386327	-	eamino acid permease	Similar to Pseudomonas aeruginosa probable amino acid permease Pa3597 SWALL:Q9HY29 (EMBL:AE004780) (440 aa) fasta scores: E(): 1.8e-63%2C 40.46 38d in 435 aa and to Escherichia coli hypothetical transport protein YcjJ or b1296 SWALL:YCJJ_ECOLI (SWALL:P76037) (461 aa) fasta scores: E(): 3e-59%2C 38.32 38d in 441 aa	gene	gene1243	http://www.ncbi.nlm.nih.gov/gene/?term=YE1243
YE1244	YE1244		YE1244	1386752	1388482	-	hypothetical protein	Similar to many including: Rhizobium meliloti hypothetical protein Ra0050 or Sma0101 SWALL:Q930Z4 (EMBL:AE007199) (541 aa) fasta scores: E(): 1e-15%2C 30.29 id in 571 aa and to Erwinia carotovora exoenzymes regulatory protein AepA precursor SWALL:AEPA_ERWCA (SWALL:Q06555) (465 aa) fasta scores: E(): 1.3e-12%2C 23.89 id in 452 aa	gene	gene1244	http://www.ncbi.nlm.nih.gov/gene/?term=YE1244
YE1245	YE1245		YE1245	1388642	1389232	-	TetR family regulatory protein	Similar to many proposed regulatory proteins including: Salmonella typhi putative regulatory protein Sty1490 SWALL:Q8Z730 (EMBL:AL627270) (192 aa) fasta scores: E(): 1.2e-26%2C 44.61 38d in 195 aa%2C and to Streptomyces coelicolor putative transcriptional regulator Sco6775 or Sc6a5.24C SWALL:Q9X7X0 (EMBL:AL049485) (206 aa) fasta scores: E(): 1.4e-05%2C 30.58 38d in 170 aa	gene	gene1245	http://www.ncbi.nlm.nih.gov/gene/?term=YE1245
YE1246	YE1246		YE1246	1389366	1390859	+	major facilitator transporter	Similar to Salmonella typhimurium methyl viologen resistance protein SmvA or Stm1574 SWALL:SMVA_SALTY (SWALL:P37594) (495 aa) fasta scores: E(): 3.6e-100%2C57.98 38d in 495 aa and to Pseudomonas aeruginosa probable MFS transporter Pa1282 SWALL:Q9I462 (EMBL:AE004557) (501 aa) fasta scores: E(): 4.2e-62%2C 42.76 38d in 484 aa	gene	gene1246	http://www.ncbi.nlm.nih.gov/gene/?term=YE1246
YE1247	YE1247		YE1247	1391203	1392348	+	ABC transporter permease	Similar to many membrane transport proteins including: Pseudomonas aeruginosa probable permease of ABC transporter Pa3211 SWALL:Q9HZ29 (EMBL:AE004744) (381 aa) fasta scores: E(): 1.5e-94%2C 69.55 38d in 381 aa and to Brucella melitensis toluene tolerance protein Ttg2b or Bmei0965 SWALL:Q8YH39 (EMBL:AE009537) (390 aa) fasta scores: E(): 5.2e-37%2C 34.84 38d in 376 aa	gene	gene1247	http://www.ncbi.nlm.nih.gov/gene/?term=YE1247
YE1248	YE1248		YE1248	1392345	1393148	+	ABC transporter ATP-binding protein	Similar to many membrane transport proteins including:Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa3212 SWALL:Q9HZ28 (EMBL:AE004744) (264 aa) fasta scores: E(): 3.5e-67%2C80.69 38d in 259 aa and Rhizobium meliloti putative ABC transporter ATP-binding protein R01832 or Smc00175 SWALL:Q92PD6 (EMBL:AL591788) (269 aa) fasta scores: E(): 2.5e-42%2C 53.62 38d in 248 aa	gene	gene1248	http://www.ncbi.nlm.nih.gov/gene/?term=YE1248
YE1249	YE1249		YE1249	1393149	1394090	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein Pa3213 SWALL:Q9HZ27 (EMBL:AE004744) (312 aa) fasta scores: E(): 2.3e-64%2C 60.89 38d in 312 aa and to Caulobacter crescentus ABC transporter%2C periplasmic substrate-binding protein%2C putative Cc2320 SWALL:Q9A5X7 (EMBL:AE005902) (312 aa) fasta scores: E(): 7.4e-24%2C31.73 38d in 312 aa	gene	gene1249	http://www.ncbi.nlm.nih.gov/gene/?term=YE1249
YE1250	YE1250		YE1250	1394087	1394722	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein Pa3214 SWALL:Q9HZ26 (EMBL:AE004744) (214 aa) fasta scores: E(): 1.4e-35%2C 53 38d in 200 aa%2C Xylella fastidiosa hypothetical protein Xf1300 SWALL:Q9PDS9 (EMBL:AE003963) (213 aa) fasta scores: E(): 4.8e-14%2C 32.29 38d in 192 aa and Ralstonia solanacearum probable lipoprotein Rsc0316 or Rs03283 SWALL:Q8Y2L9 (EMBL:AL646058) (211 aa) fasta scores: E(): 9.6e-05%2C 28.07 38d in 203 aa	gene	gene1250	http://www.ncbi.nlm.nih.gov/gene/?term=YE1250
YE1251	YE1251		YE1251	1394764	1395558	-	regulatory protein		gene	gene1251	http://www.ncbi.nlm.nih.gov/gene/?term=YE1251
YE1252	YE1252		YE1252	1395649	1396575	-	hypothetical protein		gene	gene1252	http://www.ncbi.nlm.nih.gov/gene/?term=YE1252
YE1253	YE1253		YE1253	1396957	1397511	+	hypothetical protein		gene	gene1253	http://www.ncbi.nlm.nih.gov/gene/?term=YE1253
YE1254	YE1254		YE1254	1397537	1398115	+	hypothetical protein		gene	gene1254	http://www.ncbi.nlm.nih.gov/gene/?term=YE1254
YE1255	YE1255	ascG	ascG	1398513	1399544	-	regulatory protein	Similar to Escherichia coli cryptic asc operon PTS system repressor AscG or B2714 SWALL:ASCG_ECOLI (SWALL:P24242) (336 aa) fasta scores: E(): 3.2e-78%2C 64.95 id in 331 aa%2C and to Escherichia coli O157:H7 AscBF operon repressor AscG or z4022 or ecs3570 SWALL:Q8X843 (EMBL:AE005499) (337 aa) fasta scores: E(): 2.8e-78%2C64.34 38d in 331 aa	gene	gene1255	http://www.ncbi.nlm.nih.gov/gene/?term=YE1255
YE1256	YE1256	ascF	ascF	1399879	1401345	+	PTS system cellobiose/arbutin/salicin-specific transporter subunit IIBC	phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel	gene	gene1256	http://www.ncbi.nlm.nih.gov/gene/?term=YE1256
YE1257	YE1257	ascB	ascB	1401361	1402791	+	cryptic 6-phospho-beta-glucosidase	Similar to Escherichia coli 6-phospho-beta-glucosidase AscB or b2716 SWALL:ASCB_ECOLI (SWALL:P24240) (474 aa) fasta scores: E(): 4e-175%2C 83.08 id in 473 aa%2C and to Escherichia coli O157:H7 6-phospho-beta-glucosidase%2C cryptic ascB or z4024 or ecs3572 SWALL:Q8X841 (EMBL:AE005500) (474 aa) fasta scores: E(): 2.6e-175%2C 83.51 38d in 473 aa	gene	gene1257	http://www.ncbi.nlm.nih.gov/gene/?term=YE1257
YE1258	YE1258		YE1258	1402884	1403195	-	hypothetical protein		gene	gene1258	http://www.ncbi.nlm.nih.gov/gene/?term=YE1258
YE1259	YE1259		YE1259	1403195	1403854	-	hypothetical protein	Similar to Yersinia pestis hypothetical protein Ypo0864 SWALL:Q8ZHM7 (EMBL:AJ414145) (226 aa) fasta scores: E(): 1.1e-59%2C 78.57 38d in 210 aa and Caulobacter crescentus hypothetical protein Cc3691 SWALL:Q9A275 (EMBL:AE006026) (152 aa) fasta scores: E(): 1.1e-18%2C47.02 38d in 151 aa%2C and to Escherichia coli O157:H7 orf%2Chypothetical protein yqji or z4424 or ecs3953 SWALL:Q8XAN2 (EMBL:AE005536) (207 aa) fasta scores: E(): 7.4e-17%2C36.45 38d in 203 aa	gene	gene1259	http://www.ncbi.nlm.nih.gov/gene/?term=YE1259
YE1260	YE1260		YE1260	1404268	1404600	-	hypothetical protein		gene	gene1260	http://www.ncbi.nlm.nih.gov/gene/?term=YE1260
YE1261	YE1261		YE1261	1404851	1405099	-			gene	gene1261	http://www.ncbi.nlm.nih.gov/gene/?term=YE1261
YE1262	YE1262		YE1262	1405460	1406371	-	inner membrane protein	Similar to many including: Salmonella typhimurium putative transport YfdC or Stm2393 SWALL:Q8ZNA4 (EMBL:AE008807) (313 aa) fasta scores: E(): 3.4e-76%2C68.27 38d in 290 aa and Escherichia coli hypothetical protein YfdC or b2347 SWALL:YFDC_ECOLI (SWALL:P37327) (310 aa) fasta scores: E(): 7.2e-75%2C 67.46 38d in 292 aa	gene	gene1263	http://www.ncbi.nlm.nih.gov/gene/?term=YE1262
YE1263	YE1263	ccmA	ccmA	1406645	1407271	+	cytochrome c biogenesis protein CcmA	ATP-binding protein%3B required for proper cytochrome c maturation	gene	gene1264	http://www.ncbi.nlm.nih.gov/gene/?term=YE1263
YE1264	YE1264	ccmB	ccmB	1407271	1407930	+	heme exporter protein B		gene	gene1265	http://www.ncbi.nlm.nih.gov/gene/?term=YE1264
YE1265	YE1265	ccmC	ccmC	1408101	1408838	+	heme exporter protein C		gene	gene1266	http://www.ncbi.nlm.nih.gov/gene/?term=YE1265
YE1266	YE1266	ccmD	ccmD	1408835	1409080	+	heme exporter protein D		gene	gene1267	http://www.ncbi.nlm.nih.gov/gene/?term=YE1266
YE1267	YE1267	ccmE	ccmE	1409080	1409574	+	cytochrome c-type biogenesis protein CcmE	CycJ%3B periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes%3B requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome%3B part of the cytochrome c maturation system%3B periplasmic protein anchored to the inner membrane	gene	gene1268	http://www.ncbi.nlm.nih.gov/gene/?term=YE1267
YE1268	YE1268	ccmF	ccmF	1409571	1411538	+	cytochrome c-type biogenesis protein		gene	gene1269	http://www.ncbi.nlm.nih.gov/gene/?term=YE1268
YE1269	YE1269	ccmG	ccmG	1411538	1412104	+	thiol:disulfide interchange protein DsbE		gene	gene1270	http://www.ncbi.nlm.nih.gov/gene/?term=YE1269
YE1270	YE1270	ccmH	ccmH	1412197	1412607	+	cytochrome c-type biogenesis protein		gene	gene1271	http://www.ncbi.nlm.nih.gov/gene/?term=YE1270
YE1271	YE1271	vacJ	vacJ	1412607	1413827	+	VacJ lipoprotein		gene	gene1272	http://www.ncbi.nlm.nih.gov/gene/?term=YE1271
YE1272	YE1272	vacJ	vacJ	1413864	1414628	+	VacJ lipoprotein		gene	gene1273	http://www.ncbi.nlm.nih.gov/gene/?term=YE1272
YE1273	YE1273		YE1273	1414914	1415177	+	hypothetical protein	Weakly similar to Escherichia coli%2C and Escherichia coli O157:H7 PemI-like protein 1 ChpR or maze or chpai or b2783 or z4098 or ecs3643 SWALL:CHPR_ECOLI (SWALL:P18534) (82 aa) fasta scores: E(): 0.012%2C 27.84 38d in 79 aa	gene	gene1274	http://www.ncbi.nlm.nih.gov/gene/?term=YE1273
YE1274	YE1274	fadL	fadL	1415768	1417042	-	long-chain fatty acid outer membrane transporter		gene	gene1275	http://www.ncbi.nlm.nih.gov/gene/?term=YE1274
YE1275	YE1275		YE1275	1417467	1417778	+	hypothetical protein	Similar to Yersinia pestis hypothetical protein Ypo2745 SWALL:Q8ZD47 (EMBL:AJ414153) (98 aa) fasta scores: E(): 1.3e-32%2C 82.52 38d in 103 aa and to Escherichia coli O157:H7 hypothetical protein Z3606 or Ecs3226 SWALL:Q8XCN7 (EMBL:AE005466) (102 aa) fasta scores: E(): 7.9e-25%2C68.75 38d in 96 aa	gene	gene1276	http://www.ncbi.nlm.nih.gov/gene/?term=YE1275
YE1276	YE1276	fadI	fadI	1418075	1419385	+	3-ketoacyl-CoA thiolase	FadI%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadJ%3B similar to FadA2B2 complex%3B functions in beta-oxidation of fatty acids during anaerobic growth	gene	gene1277	http://www.ncbi.nlm.nih.gov/gene/?term=YE1276
YE1277	YE1277	fadJ	fadJ	1419523	1421622	+	multifunctional fatty acid oxidation complex subunit alpha	multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI%3B similar to FadA2B2 complex%3B involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate	gene	gene1278	http://www.ncbi.nlm.nih.gov/gene/?term=YE1277
YE1278	YE1278	sixA	sixA	1422004	1422495	+	phosphohistidine phosphatase		gene	gene1279	http://www.ncbi.nlm.nih.gov/gene/?term=YE1278
YE1279	YE1279		YE1279	1422623	1423153	-	hypothetical protein		gene	gene1280	http://www.ncbi.nlm.nih.gov/gene/?term=YE1279
YE1280	YE1280		YE1280	1423360	1424292	+	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase	involved in methylation of ribosomal protein L3	gene	gene1281	http://www.ncbi.nlm.nih.gov/gene/?term=YE1280
YE1281	YE1281	aroC	aroC	1424369	1425454	+	chorismate synthase	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis	gene	gene1282	http://www.ncbi.nlm.nih.gov/gene/?term=YE1281
YE1282	YE1282	mepA	mepA	1425460	1426287	+	penicillin-insensitive murein endopeptidase	D-alanyl-D-alanine endopeptidase%3B functions in hydrolyzing cell wall peptidoglycan%3B similar to LAS metallopeptidases%3B forms a dimer in periplasm	gene	gene1283	http://www.ncbi.nlm.nih.gov/gene/?term=YE1282
YE1283	YE1283	yfcA	yfcA	1426291	1427097	+	hypothetical protein		gene	gene1284	http://www.ncbi.nlm.nih.gov/gene/?term=YE1283
YE1284	YE1284		YE1284	1427181	1427723	+	hypothetical protein		gene	gene1285	http://www.ncbi.nlm.nih.gov/gene/?term=YE1284
YE1285	YE1285		YE1285	1427974	1428249	+	hypothetical protein		gene	gene1286	http://www.ncbi.nlm.nih.gov/gene/?term=YE1285
YE1286	YE1286	mnmC	mnmC	1428355	1430397	-	5-methylaminomethyl-2-thiouridine methyltransferase	catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules	gene	gene1287	http://www.ncbi.nlm.nih.gov/gene/?term=YE1286
YE1287	YE1287	fabB	fabB	1430569	1431792	+	3-oxoacyl-ACP synthase	FabB%2C beta-Ketoacyl-ACP synthase I%2C KASI%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP	gene	gene1288	http://www.ncbi.nlm.nih.gov/gene/?term=YE1287
YE1288	YE1288		YE1288	1432211	1433218	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein Pa0338 SWALL:Q9I6F5 (EMBL:AE004471) (376 aa) fasta scores: E(): 2.5e-44%2C 43.43 38d in 320 aa and to Aquifex aeolicus hypothetical protein Aq_689 aq_689 SWALL:O66912 (EMBL:AE000702) (336 aa) fasta scores: E(): 6e-19%2C 29.08 id in 337 aa	gene	gene1289	http://www.ncbi.nlm.nih.gov/gene/?term=YE1288
YE1289	YE1289		YE1289	1433256	1433954	-	aspartate/glutamate racemase		gene	gene1290	http://www.ncbi.nlm.nih.gov/gene/?term=YE1289
YE1290	YE1290		YE1290	1434169	1435563	-	hypothetical protein	Weakly similar to many maltoporins including: Yersinia pestis maltoporin precursor 1 LamB1 or LamB or Ypo3711 or y0032 SWALL:LMB1_YERPE (SWALL:Q8ZAS9) (423 aa) fasta scores: E(): 2.4e-14%2C 27.19 38d in 445 aa and to Klebsiella pneumoniae maltoporin precursor LamB SWALL:LAMB_KLEPN (SWALL:P31242) (429 aa) fasta scores: E(): 6.3e-12%2C 24.76 38d in 424 aa	gene	gene1291	http://www.ncbi.nlm.nih.gov/gene/?term=YE1290
YE1291	YE1291		YE1291	1435952	1436254	-	PTS system protein	Similar to many PTS system proteins including: Escherichia coli%2C and Escherichia coli O157:H7 PTS system%2Ccellobiose-specific IIA component CelC or b1736 or z2766 or ecs2442 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 4.6e-16%2C 52.04 38d in 98 aa%2C Vibrio cholerae PTS system%2C cellobiose-specific IIA component Vc1283 SWALL:Q9KSH3 (EMBL:AE004207) (111 aa) fasta scores: E(): 2.4e-15%2C 52.04 38d in 98 aa and to Yersinia pestis PTS system%2C cellobiose-specific IIA component CelC or ypo2680 SWALL:Q8ZDA8 (EMBL:AJ414153) (115 aa) fasta scores: E(): 1.6e-14%2C 49.48 38d in 97 aa	gene	gene1292	http://www.ncbi.nlm.nih.gov/gene/?term=YE1291
YE1292	YE1292		YE1292	1436269	1437651	-	glycosyl hydrolase	Similar to many putative glycosyl hydrolases including: Salmonella typhi Sty4009 SWALL:Q8Z2J8 (EMBL:AL627280) (460 aa) fasta scores: E(): 4.5e-174%2C83.04 38d in 460 aa%2C Listeria monocytogenes hypothetical protein Lmo0574 SWALL:Q8Y9F4 (EMBL:AL591975) (464 aa) fasta scores: E(): 4.6e-132%2C 63.71 38d in 463 aa and Caldocellum saccharolyticum beta-glucosidase a BglA SWALL:BGLS_CALSA (SWALL:P10482) (455 aa) fasta scores: E(): 3e-53%2C 33.26 38d in 463 aa	gene	gene1293	http://www.ncbi.nlm.nih.gov/gene/?term=YE1292
YE1293	YE1293		YE1293	1437668	1438999	-	PTS system protein	Similar to many PTS system proteins including: Vibrio cholerae PTS system%2C cellobiose-specific IIC component vc1282 SWALL:Q9KSH4 (EMBL:AE004207) (446 aa) fasta scores: E(): 6.3e-91%2C 47.86 38d in 422 aa%2CLactobacillus casei PTS system%2C lactose-specific IIBC component LacE SWALL:PTLB_LACCA (SWALL:P24400) (577 aa) fasta scores: E(): 4.9e-42%2C 31.83 38d in 446 aa	gene	gene1294	http://www.ncbi.nlm.nih.gov/gene/?term=YE1293
YE1294	YE1294		YE1294	1439012	1439326	-	PTS system protein	Similar to Vibrio cholerae PTS system%2Ccellobiose-specific IIB component Vc1281 SWALL:Q9KSH5 (EMBL:AE004207) (101 aa) fasta scores: E(): 4.5e-15%2C51.48 38d in 101 aa and to Bacillus stearothermophilus PTS system%2C cellobiose-specific IIB component CelA SWALL:PTCB_BACST (SWALL:Q45399) (100 aa) fasta scores: E(): 3.8e-11%2C 44.79 38d in 96 aa	gene	gene1295	http://www.ncbi.nlm.nih.gov/gene/?term=YE1294
YE1295	YE1295		YE1295	1439678	1440634	+	LacI family transcriptional regulatory protein	Similar to Clostridium acetobutylicum transcriptional regulator%2C LacI family Cac0360 SWALL:Q97M40 (EMBL:AE007550) (328 aa) fasta scores: E(): 3.5e-12%2C 25.41 38d in 303 aa and to Haemophilus influenzae galactose operon repressor GalR or gals or hi0821 SWALL:GALR_HAEIN (SWALL:P31766) (332 aa) fasta scores: E(): 6.5e-09%2C 29.33 38d in 300 aa	gene	gene1296	http://www.ncbi.nlm.nih.gov/gene/?term=YE1295
YE1296	YE1296		YE1296	1440917	1442218	+	glucose-1-phosphatase/inositol phosphatase	Similar to Escherichia coli glucose-1-phosphatase precursor Agp or b1002 SWALL:AGP_ECOLI (SWALL:P19926) (413 aa) fasta scores: E(): 9.1e-52%2C 49.65 38d in 429 aa%2C and to Salmonella typhimurium glucose-1-phosphatase precursor Agp or Stm1117 SWALL:AGP_SALTY (SWALL:O33921) (413 aa) fasta scores: E(): 2.6e-49%2C 47.8 38d in 410 aa	gene	gene1297	http://www.ncbi.nlm.nih.gov/gene/?term=YE1296
YE1297	YE1297		YE1297	1442334	1443467	+	inner membrane protein	Similar to Escherichia coli hypothetical protein YbiR or b0818 SWALL:YBIR_ECOLI (SWALL:P75788) (372 aa) fasta scores: E(): 1.4e-78%2C 57.53 38d in 365 aa and to Salmonella typhi putative membrane protein YbiR or Sty0877 SWALL:Q8Z871 (EMBL:AL627268) (370 aa) fasta scores: E(): 1.8e-78%2C 58.95 38d in 363 aa	gene	gene1298	http://www.ncbi.nlm.nih.gov/gene/?term=YE1297
YE1298	YE1298	flk	flk	1443557	1444594	-	flagella biosynthesis regulator	in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system%3B lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm%3B inner membrane-anchored protein	gene	gene1299	http://www.ncbi.nlm.nih.gov/gene/?term=YE1298
YE1299	YE1299	scsA	scsA	1444897	1445253	+	metal resistance protein	Similar to Salmonella typhimurium suppressor for copper-sensitivity A ScsA or Stm1113 SWALL:O33917 (EMBL:U75949) (120 aa) fasta scores: E(): 2.6e-22%2C 57.37 id in 122 aa and to Salmonella typhi membrane protein%2Csuppressor for copper-sensitivity A ScsA or Sty1149 SWALL:Q8Z7P5 (EMBL:AL627269) (120 aa) fasta scores: E(): 2.6e-22%2C 57.37 38d in 122 aa	gene	gene1300	http://www.ncbi.nlm.nih.gov/gene/?term=YE1299
YE1300	YE1300	scsB	scsB	1445304	1447364	+	metal resistance protein	Similar to Salmonella typhimurium suppression of copper sensitivity ScsB or Stm1114 SWALL:Q8ZQ43 (EMBL:AE008748) (628 aa) fasta scores: E(): 1.1e-115%2C55.03 38d in 685 aa and to Salmonella typhi membrane protein%2C suppressor for copper-sensitivity B ScsB or sty1150 SWALL:Q8Z7P4 (EMBL:AL627269) (628 aa) fasta scores: E(): 1.1e-115%2C 55.18 38d in 685 aa%2C and to Xylella fastidiosa c-type cytochrome biogenesis protein xf0620 SWALL:Q9PFN7 (EMBL:AE003907) (758 aa) fasta scores: E(): 7.8e-36%2C 31.03 38d in 435 aa	gene	gene1301	http://www.ncbi.nlm.nih.gov/gene/?term=YE1300
YE1301	YE1301		YE1301	1447361	1448086	+	metal resistance protein	Similar to Salmonella typhimurium suppressor for copper-sensitivity C precursor ScsC or Stm1115 SWALL:O33919 (EMBL:U75949) (207 aa) fasta scores: E(): 1.9e-38%2C 47.71 38d in 241 aa%2C and to Salmonella typhi secreted protein%2C suppressor for copper-sensitivity ScsC or Sty1151 SWALL:Q8Z7P3 (EMBL:AL627269) (207 aa) fasta scores: E(): 1.9e-38%2C 47.71 38d in 241 aa%2C and to Rickettsia conorii similarity to thiol:disulfide interchange protein dsba rc0597 SWALL:Q92I23 (EMBL:AE008620) (263 aa) fasta scores: E(): 8.2e-17%2C28.97 38d in 214 aa	gene	gene1302	http://www.ncbi.nlm.nih.gov/gene/?term=YE1301
YE1302	YE1302		YE1302	1448083	1448583	+	metal resistance protein	Similar to Salmonella typhimurium suppression of copper sensitivity ScsD or Stm1116 SWALL:Q8ZQ42 (EMBL:AE008748) (168 aa) fasta scores: E(): 2.5e-37%2C56.79 38d in 162 aa%2C and to Salmonella typhimurium suppressor for copper-sensitivity D ScsD SWALL:O33920 (EMBL:U75949) (168 aa) fasta scores: E(): 2.5e-37%2C 56.79 id in 162 aa%2C and to Haemophilus influenzae thioredoxin-like protein Hi1115 hi1115 SWALL:THIX_HAEIN (SWALL:P43787) (167 aa) fasta scores: E(): 1.6e-28%2C 45.12 id in 164 aa	gene	gene1303	http://www.ncbi.nlm.nih.gov/gene/?term=YE1302
YE1303	YE1303		YE1303	1448640	1450121	-	hypothetical protein	Similar to many proteins which displaying both a GntR-family trancriptional regulatory HTH domain and an amino transferase domain a including: Thermoplasma acidophilum aspartate aminotransferase related protein Ta1193 SWALL:Q9HIY3 (EMBL:AL445066) (402 aa) fasta scores: E(): 1.2e-40%2C 33.24 38d in 373 aa%2C Pyrococcus abyssi aminotransferase Pab2227 SWALL:Q9V282 (EMBL:AJ248283) (410 aa) fasta scores: E(): 1.9e-39%2C 33.6 38d in 369 aa and to Anabaena sp. transcriptional regulator Alr4738 SWALL:Q8YN32 (EMBL:AP003597) (490 aa) fasta scores: E(): 6.4e-39%2C 32.16 38d in 485 aa	gene	gene1304	http://www.ncbi.nlm.nih.gov/gene/?term=YE1303
YE1304	YE1304		YE1304	1450279	1451322	+	inner membrane protein	Similar to many putative membrane proteins including: Methanosarcina acetivorans integral membrane protein Ma3243 SWALL:AAM06614 (EMBL:AE011028) (291 aa) fasta scores: E(): 5.6e-10%2C 27.97 38d in 311 aa and Bacillus halodurans hypothetical protein Bh2747 SWALL:Q9K9A2 (EMBL:AP001516) (302 aa) fasta scores: E(): 4.5e-07%2C 22.71 38d in 295 aa	gene	gene1305	http://www.ncbi.nlm.nih.gov/gene/?term=YE1304
YE1305	YE1305		YE1305	1451329	1452213	-	hypothetical protein		gene	gene1306	http://www.ncbi.nlm.nih.gov/gene/?term=YE1305
YE1306	YE1306		YE1306	1452386	1453171	+	AraC family transcriptional regulator		gene	gene1307	http://www.ncbi.nlm.nih.gov/gene/?term=YE1306
YE1307	YE1307	pdxB	pdxB	1453333	1454460	+	D-isomer specific 2-hydroxyacid dehydrogenase		gene	gene1308	http://www.ncbi.nlm.nih.gov/gene/?term=YE1307
YE1308	YE1308	asd	asd	1454845	1455855	+	semialdehyde dehydrogenase		gene	gene1309	http://www.ncbi.nlm.nih.gov/gene/?term=YE1308
YE1309	YE1309	truA	truA	1455855	1456697	+	tRNA pseudouridine synthase A	mediates pseudouridylation (positions 38%2C 39%2C 40) at the tRNA anticodon region which contributes to the structural stability	gene	gene1310	http://www.ncbi.nlm.nih.gov/gene/?term=YE1309
YE1310	YE1310	dedA	dedA	1456829	1457491	+	hypothetical protein		gene	gene1311	http://www.ncbi.nlm.nih.gov/gene/?term=YE1310
YE1311	YE1311	accD	accD	1457722	1458633	+	acetyl-CoA carboxylase subunit beta	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer of AccA2D2 subunits	gene	gene1312	http://www.ncbi.nlm.nih.gov/gene/?term=YE1311
YE1312	YE1312	dedC	dedC	1459015	1460283	+	bifunctional folylpolyglutamate synthase/ dihydrofolate synthase		gene	gene1313	http://www.ncbi.nlm.nih.gov/gene/?term=YE1312
YE1313	YE1313	dedD	dedD	1460323	1461042	+	hypothetical protein		gene	gene1314	http://www.ncbi.nlm.nih.gov/gene/?term=YE1313
YE1314	YE1314	cvpA	cvpA	1461233	1461742	+	colicin V production protein	membrane protein required for colicin V production	gene	gene1315	http://www.ncbi.nlm.nih.gov/gene/?term=YE1314
YE1315	YE1315	purF	purF	1461755	1463272	+	amidophosphoribosyltransferase	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway	gene	gene1316	http://www.ncbi.nlm.nih.gov/gene/?term=YE1315
YE1317	YE1317	ubiX	ubiX	1463680	1464252	+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate	gene	gene1317	http://www.ncbi.nlm.nih.gov/gene/?term=YE1317
YE1318	YE1318	hisJ	hisJ	1464561	1465343	+	histidine-binding periplasmic protein		gene	gene1318	http://www.ncbi.nlm.nih.gov/gene/?term=YE1318
YE1319	YE1319	hisQ	hisQ	1465448	1466134	+	histidine transport system permease HisQ		gene	gene1319	http://www.ncbi.nlm.nih.gov/gene/?term=YE1319
YE1320	YE1320	hisM	hisM	1466131	1466847	+	histidine transport system permease HisM		gene	gene1320	http://www.ncbi.nlm.nih.gov/gene/?term=YE1320
YE1321	YE1321	hisP	hisP	1466883	1467680	+	histidine/lysine/arginine/ornithine transporter subunit		gene	gene1321	http://www.ncbi.nlm.nih.gov/gene/?term=YE1321
YE1322	YE1322		YE1322	1467937	1474269	+	RTX-family protein	Similar to many RTX-family toxins including: Yersinia pestis putative virulence determinant Ypo0947 SWALL:Q8ZHF2 (EMBL:AJ414145) (3110 aa) fasta scores: E(): 7e-25%2C 21.71 38d in 1630 aa%2C Actinobacillus actinomycetemcomitans leukotoxin LktA or ltA SWALL:LKTA_ACTAC (SWALL:P16462) (1050 aa) fasta scores: E(): 9.7e-11%2C 25.24 38d in 519 aa and Pasteurella haemolytica leukotoxin from serotype a11 LktA SWALL:LKAB_PASHA (SWALL:P55118) (953 aa) fasta scores: E(): 1.1e-09%2C 23.86 38d in 746 aa	gene	gene1322	http://www.ncbi.nlm.nih.gov/gene/?term=YE1322
YE1323	YE1323		YE1323	1474340	1475248	-	hypothetical protein		gene	gene1323	http://www.ncbi.nlm.nih.gov/gene/?term=YE1323
YE1324	YE1324		YE1324	1475876	1476574	+	hypothetical protein		gene	gene1324	http://www.ncbi.nlm.nih.gov/gene/?term=YE1324
YE1325	YE1325		YE1325	1476795	1477349	+	hypothetical protein		gene	gene1325	http://www.ncbi.nlm.nih.gov/gene/?term=YE1325
YE1326	YE1326		YE1326	1477421	1477969	+	hypothetical protein		gene	gene1326	http://www.ncbi.nlm.nih.gov/gene/?term=YE1326
YE1326a	YE1326a		YE1326a	1478092	1478601	-	transposase		gene	gene1327	http://www.ncbi.nlm.nih.gov/gene/?term=YE1326a
YE1328	YE1328	ulaA	ulaA	1478953	1480209	-	PTS system ascorbate-specific transporter subunit IIC	membrane component%3B functions with enzymes IIB (sgaB%3B ulaB) and IIA (sgaA%3B ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate%3B sgaTBA are regulated by yifQ as well as Crp and Fnr	gene	gene1328	http://www.ncbi.nlm.nih.gov/gene/?term=YE1328
YE1329	YE1329		YE1329	1480222	1480509	-	PTS system transporter subunit IIB		gene	gene1329	http://www.ncbi.nlm.nih.gov/gene/?term=YE1329
YE1330	YE1330		YE1330	1480552	1480995	-	PTS system transporter subunit IIA		gene	gene1330	http://www.ncbi.nlm.nih.gov/gene/?term=YE1330
YE1331	YE1331		YE1331	1481241	1482266	+	LacI family transcriptional regulator		gene	gene1331	http://www.ncbi.nlm.nih.gov/gene/?term=YE1331
YE1333	YE1333	pta	pta	1482848	1485001	-	phosphate acetyltransferase	catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate%3B when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate	gene	gene1333	http://www.ncbi.nlm.nih.gov/gene/?term=YE1333
YE1334	YE1334	ack	ack	1485159	1486361	-	acetate kinase	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation%3B utilizes magnesium and ATP%3B also involved in conversion of acetate to aceyl-CoA	gene	gene1334	http://www.ncbi.nlm.nih.gov/gene/?term=YE1334
YE1335	YE1335		YE1335	1486794	1487249	+	hypothetical protein		gene	gene1335	http://www.ncbi.nlm.nih.gov/gene/?term=YE1335
YE1336	YE1336		YE1336	1487418	1487912	+	hypothetical protein		gene	gene1336	http://www.ncbi.nlm.nih.gov/gene/?term=YE1336
YE1337	YE1337		YE1337	1487953	1488615	+	phosphatase		gene	gene1337	http://www.ncbi.nlm.nih.gov/gene/?term=YE1337
YE1338	YE1338		YE1338	1488851	1489648	-	hypothetical protein	no significant database hits	gene	gene1338	http://www.ncbi.nlm.nih.gov/gene/?term=YE1338
YE1339	YE1339		YE1339	1489966	1491849	+	ion transport protein		gene	gene1339	http://www.ncbi.nlm.nih.gov/gene/?term=YE1339
YE1340	YE1340		YE1340	1492019	1492612	-	hypothetical protein		gene	gene1340	http://www.ncbi.nlm.nih.gov/gene/?term=YE1340
YE1341	YE1341	aat	aat	1493279	1494493	-	aminotransferase AlaT	broad specificity%3B family IV%3B in Corynebacterium glutamicum this protein can use glutamate%2C 2-aminobutyrate%2C and aspartate as amino donors and pyruvate as the acceptor	gene	gene1341	http://www.ncbi.nlm.nih.gov/gene/?term=YE1341
YE1343	YE1343	hexA	hexA	1495357	1496289	+	LysR family transcriptional regulator		gene	gene1342	http://www.ncbi.nlm.nih.gov/gene/?term=YE1343
YE1344	YE1344	nuoA	nuoA	1497136	1497588	+	NADH dehydrogenase subunit A	Catalyzes the transfer of electrons from NADH to quinone	gene	gene1343	http://www.ncbi.nlm.nih.gov/gene/?term=YE1344
YE1345	YE1345	nuoB	nuoB	1497746	1498423	+	NADH dehydrogenase subunit B	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen	gene	gene1344	http://www.ncbi.nlm.nih.gov/gene/?term=YE1345
YE1346	YE1346	nuoD	nuoD	1498563	1500359	+	bifunctional NADH:ubiquinone oxidoreductase subunit C/D	NuoCD%3B NDH-1 shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B subunits NuoCD%2C E%2C F%2C and G constitute the peripheral sector of the complex%3B in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms	gene	gene1345	http://www.ncbi.nlm.nih.gov/gene/?term=YE1346
YE1347	YE1347	nuoE	nuoE	1500407	1500925	+	NADH dehydrogenase subunit E	Catalyzes the transfer of electrons from NADH to quinone	gene	gene1346	http://www.ncbi.nlm.nih.gov/gene/?term=YE1347
YE1348	YE1348	nuoF	nuoF	1500922	1502292	+	NADH dehydrogenase I subunit F	shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B NuoF is part of the soluble NADH dehydrogenase fragment%2C which represents the electron input part of NADH dehydrogenase	gene	gene1347	http://www.ncbi.nlm.nih.gov/gene/?term=YE1348
YE1349	YE1349	nuoG	nuoG	1502398	1505142	+	NADH dehydrogenase subunit G	Catalyzes the transfer of electrons from NADH to quinone	gene	gene1348	http://www.ncbi.nlm.nih.gov/gene/?term=YE1349
YE1350	YE1350	nuoH	nuoH	1505139	1506116	+	NADH dehydrogenase subunit H	Catalyzes the transfer of electrons from NADH to quinone	gene	gene1349	http://www.ncbi.nlm.nih.gov/gene/?term=YE1350
YE1351	YE1351	nuoI	nuoI	1506131	1506673	+	NADH dehydrogenase subunit I	Catalyzes the transfer of electrons from NADH to quinone	gene	gene1350	http://www.ncbi.nlm.nih.gov/gene/?term=YE1351
YE1352	YE1352	nuoJ	nuoJ	1506686	1507231	+	NADH dehydrogenase subunit J	Catalyzes the transfer of electrons from NADH to quinone	gene	gene1351	http://www.ncbi.nlm.nih.gov/gene/?term=YE1352
YE1353	YE1353	nuoK	nuoK	1507228	1507530	+	NADH dehydrogenase subunit K	Catalyzes the transfer of electrons from NADH to quinone	gene	gene1352	http://www.ncbi.nlm.nih.gov/gene/?term=YE1353
YE1354	YE1354	nuoL	nuoL	1507527	1509371	+	NADH dehydrogenase subunit L	Catalyzes the transfer of electrons from NADH to ubiquinone	gene	gene1353	http://www.ncbi.nlm.nih.gov/gene/?term=YE1354
YE1355	YE1355	nuoM	nuoM	1509390	1510913	+	NADH dehydrogenase subunit M	Catalyzes the transfer of electrons from NADH to quinone	gene	gene1354	http://www.ncbi.nlm.nih.gov/gene/?term=YE1355
YE1356	YE1356	nuoN	nuoN	1510920	1512377	+	NADH dehydrogenase subunit N	Catalyzes the transfer of electrons from NADH to quinone	gene	gene1355	http://www.ncbi.nlm.nih.gov/gene/?term=YE1356
YE1357	YE1357		YE1357	1512494	1513834	+	hypothetical protein		gene	gene1356	http://www.ncbi.nlm.nih.gov/gene/?term=YE1357
YE1358	YE1358		YE1358	1513997	1514488	+	hypothetical protein	Similar to many proteins of unknown function including: Escherichia coli hypothetical protein YcdZ or b1036 SWALL:YCDZ_ECOLI (SWALL:P75916) (163 aa) fasta scores: E(): 6.7e-45%2C 78.8 38d in 151 aa and Salmonella typhimurium hypothetical protein YcdZ or Stm1138 SWALL:YCDZ_SALTY (SWALL:O54290) (160 aa) fasta scores: E(): 4.5e-44%2C 76.82 38d in 151 aa	gene	gene1357	http://www.ncbi.nlm.nih.gov/gene/?term=YE1358
YE1359	YE1359		YE1359	1514983	1516002	+	transposase for IS1667	Similar to Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 2.3e-56%2C 45.93 38d in 344 aa and to Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 6e-50%2C 42.16 38d in 332 aa	gene	gene1358	http://www.ncbi.nlm.nih.gov/gene/?term=YE1359
YE1361	YE1361		YE1361	1516482	1516949	-	hypothetical protein		gene	gene1359	http://www.ncbi.nlm.nih.gov/gene/?term=YE1361
YE1362	YE1362	gntV	gntV	1516990	1517520	-	thermosensitive gluconokinase		gene	gene1360	http://www.ncbi.nlm.nih.gov/gene/?term=YE1362
YE1363	YE1363	idnO	idnO	1517663	1518427	-	gluconate 5-dehydrogenase	Involved in the nonphosphorylative%2C ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate	gene	gene1361	http://www.ncbi.nlm.nih.gov/gene/?term=YE1363
YE1364	YE1364		YE1364	1518810	1519802	+	LacI family transcriptional regulatory protein		gene	gene1362	http://www.ncbi.nlm.nih.gov/gene/?term=YE1364
YE1365	YE1365		YE1365	1520242	1521150	+	D-isomer specific 2-hydroxyacid dehydrogenase family protein		gene	gene1363	http://www.ncbi.nlm.nih.gov/gene/?term=YE1365
YE1366	YE1366		YE1366	1521325	1522641	+	sugar transporter		gene	gene1364	http://www.ncbi.nlm.nih.gov/gene/?term=YE1366
YE1367	YE1367		YE1367	1522704	1523210	+	hypothetical protein		gene	gene1365	http://www.ncbi.nlm.nih.gov/gene/?term=YE1367
YE1368	YE1368	edd	edd	1523214	1525031	+	phosphogluconate dehydratase	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate	gene	gene1366	http://www.ncbi.nlm.nih.gov/gene/?term=YE1368
YE1369	YE1369		YE1369	1525083	1526504	-	dehydrogenase%2C cytochrome C subunit	Similar to many including: Pantoea agglomerans cytochrome C subunit II SWALL:Q9RH53 (EMBL:AF068066) (470 aa) fasta scores: E(): 9.5e-110%2C 61.48 38d in 470 aa%2C and to Gluconobacter oxydans sorbitol dehydrogenase cytochrome C subunit SldC SWALL:Q9LBK7 (EMBL:AB039821) (478 aa) fasta scores: E(): 7.4e-73%2C 44.25 38d in 479 aa	gene	gene1367	http://www.ncbi.nlm.nih.gov/gene/?term=YE1369
YE1370	YE1370		YE1370	1526501	1528153	-	dehydrogenase	Similar to many incluuding: Pantoea agglomerans dehydrogenase subunit I SWALL:Q9RH54 (EMBL:AF068066) (551 aa) fasta scores: E(): 5.7e-188%2C 80.69 38d in 549 aa and Pantoea citrea 2-keto-gluconate dehydrogenase subunit KdgB SWALL:Q9XCR0 (EMBL:AF131202) (553 aa) fasta scores: E(): 8.8e-188%2C 81.8 38d in 544 aa	gene	gene1368	http://www.ncbi.nlm.nih.gov/gene/?term=YE1370
YE1370A	YE1370A		YE1370A	1528153	1528734	-	dehydrogenase	Similar to Pantoea citrea 2-keto-gluconate dehydrogenase subunit KdgA SWALL:Q9XCR1 (EMBL:AF131202) (189 aa) fasta scores: E(): 4.7e-19%2C 38.41 38d in 177 aa and to Pantoea agglomerans dehydrogenase subunit III SWALL:Q9RH55 (EMBL:AF068066) (188 aa) fasta scores: E(): 3.5e-23%2C 45.76 38d in 177 aa	gene	gene1369	http://www.ncbi.nlm.nih.gov/gene/?term=YE1370A
YE1371	YE1371	elaB	elaB	1529089	1529397	+	hypothetical protein		gene	gene1370	http://www.ncbi.nlm.nih.gov/gene/?term=YE1371
YE1372	YE1372		YE1372	1529782	1532073	+	autotransporter protein		gene	gene1371	http://www.ncbi.nlm.nih.gov/gene/?term=YE1372
YE1373	YE1373	menF	menF	1532262	1533620	+	menaquinone-specific isochorismate synthase		gene	gene1372	http://www.ncbi.nlm.nih.gov/gene/?term=YE1373
YE1375	YE1375	menD	menD	1533849	1535522	+	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase	SEPHCHC synthase%3B forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis	gene	gene1373	http://www.ncbi.nlm.nih.gov/gene/?term=YE1375
YE1376	YE1376		YE1376	1535609	1536343	+	acyl-CoA thioester hydrolase YfbB	catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA	gene	gene1374	http://www.ncbi.nlm.nih.gov/gene/?term=YE1376
YE1377	YE1377	menB	menB	1536357	1537214	+	naphthoate synthase	catalyzes the formation of 1%2C4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA	gene	gene1375	http://www.ncbi.nlm.nih.gov/gene/?term=YE1377
YE1378	YE1378	menC	menC	1537214	1538185	+	O-succinylbenzoate synthase	catalyzes the dehydration of 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate	gene	gene1376	http://www.ncbi.nlm.nih.gov/gene/?term=YE1378
YE1379	YE1379	menE	menE	1538356	1539594	+	O-succinylbenzoic acid--CoA ligase		gene	gene1377	http://www.ncbi.nlm.nih.gov/gene/?term=YE1379
YE1380	YE1380	katA	katA	1539790	1541232	-	catalase		gene	gene1378	http://www.ncbi.nlm.nih.gov/gene/?term=YE1380
YE1381	YE1381		YE1381	1541620	1542129	+	hypothetical protein		gene	gene1379	http://www.ncbi.nlm.nih.gov/gene/?term=YE1381
YE1382	YE1382	tyrP	tyrP	1542202	1543410	-	tyrosine-specific transport protein		gene	gene1380	http://www.ncbi.nlm.nih.gov/gene/?term=YE1382
YE1383	YE1383		YE1383	1543640	1544833	+	competence damage-inducible protein A		gene	gene1381	http://www.ncbi.nlm.nih.gov/gene/?term=YE1383
YE1384	YE1384		YE1384	1545073	1545828	+			gene	gene1382	http://www.ncbi.nlm.nih.gov/gene/?term=YE1384
YE1386	YE1386		YE1386	1545840	1546622	+	hypothetical protein	no significant database hits. This CDS is highly similar to YE1384 82.400 38dentity in 250 aa overlap%2CYE1387 87.692 38dentity in 260 aa overlap and YE1388 82.510 38dentity in 263 aa overlap	gene	gene1383	http://www.ncbi.nlm.nih.gov/gene/?term=YE1386
YE1387	YE1387		YE1387	1546634	1547410	+	hypothetical protein	no significant database hits. This CDS is highly similar to YE1384 73.200 38dentity in 250 aa overlap%2CYE1386 87.692 38dentity in 260 aa overlap and YE1388 83.908 38dentity in 261 aa overlap	gene	gene1384	http://www.ncbi.nlm.nih.gov/gene/?term=YE1387
YE1388	YE1388		YE1388	1547422	1548207	+	hypothetical protein	no significant database hits. This CDS is highly similar to YE1384 69.565 38dentity in 253 aa overlap%2CYE1386 82.510 38dentity in 260 aa overlap and YE1387 83.908 38dentity in 261 aa overlap	gene	gene1385	http://www.ncbi.nlm.nih.gov/gene/?term=YE1388
YE1389	YE1389		YE1389	1548219	1553630	+	serine protease	Similar to many putative Prokaryotic and Eukaryotic serine proteases including: Branchiostoma californiensis proprotein convertase subtilisin/kexin type 5 precursor pc6 SWALL:PCK5_BRACL (SWALL:Q9NJ15) (1696 aa) fasta scores: E(): 4.7e-23%2C 30.03 38d in 536 aa%2C Anabaena sp. hypothetical protein All0364 SWALL:Q8YZU3 (EMBL:AP003582) (900 aa) fasta scores: E(): 1.3e-54%2C 34.47 38d in 847 aa%2CHydra attenuata pc3-like endoprotease variant B precursor SWALL:NECB_HYDAT (SWALL:P29145) (710 aa) fasta scores: E(): 8.5e-15%2C 28.8 38d in 493 aa and to Mus musculus proprotein convertase subtilisin/kexin type 7 precursor pcsk7 or pc7 SWALL:PCK7_MOUSE (SWALL:Q61139) (770 aa) fasta scores: E(): 2.8e-12%2C 27.16 38d in 519 aa	gene	gene1386	http://www.ncbi.nlm.nih.gov/gene/?term=YE1389
YE1390	YE1390	eco	eco	1553727	1554233	-	ecotin	serine protease inhibitor%2C inhibits trypsin and other proteases	gene	gene1387	http://www.ncbi.nlm.nih.gov/gene/?term=YE1390
YE1391	YE1391		YE1391	1554492	1554737	-	2Fe-2S ferredoxin	plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor%2C essential for nucleotide reduction catalyzed by ribonucleotide reductases	gene	gene1388	http://www.ncbi.nlm.nih.gov/gene/?term=YE1391
YE1392	YE1392	nrdB	nrdB	1554877	1556007	-	ribonucleotide-diphosphate reductase subunit beta	B2 or R2 protein%3B type 1a enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdA	gene	gene1389	http://www.ncbi.nlm.nih.gov/gene/?term=YE1392
YE1393	YE1393	dnaF	dnaF	1556093	1558378	-	ribonucleotide-diphosphate reductase subunit alpha	Catalyzes the rate-limiting step in dNTP synthesis	gene	gene1390	http://www.ncbi.nlm.nih.gov/gene/?term=YE1393
YE1394	YE1394	pufX	pufX	1558895	1559623	-	3-demethylubiquinone-9 3-methyltransferase	Involved in ubiquinone biosynthesis	gene	gene1391	http://www.ncbi.nlm.nih.gov/gene/?term=YE1394
YE1395	YE1395	gyrA	gyrA	1559825	1562482	+	DNA gyrase subunit A	negatively supercoils closed circular double-stranded DNA	gene	gene1392	http://www.ncbi.nlm.nih.gov/gene/?term=YE1395
YE1396	YE1396	rcsC	rcsC	1562600	1565467	+	hybrid sensory kinase in two-component regulatory system with RcsB and YojN		gene	gene1393	http://www.ncbi.nlm.nih.gov/gene/?term=YE1396
YE1397	YE1397	rcsB	rcsB	1565655	1566302	-	transcriptional regulator RcsB	two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division%3B probably phosphorylated by RcsC or RcsF	gene	gene1394	http://www.ncbi.nlm.nih.gov/gene/?term=YE1397
YE1398	YE1398		YE1398	1566305	1568998	-	phosphotransfer intermediate protein in two-component regulatory system with RcsBC	Similar to Salmonella typhimurium sensor protein RcsC or Stm2271 SWALL:RCSC_SALTY (SWALL:P58662) (948 aa) fasta scores: E(): 1.6e-21%2C 21.72 38d in 755 aa%2C and to Salmonella typhimurium putative regulator YojN SWALL:Q9X6X6 (EMBL:AF153717) (889 aa) fasta scores: E(): 3.8e-153%2C 47.99 38d in 896 aa	gene	gene1395	http://www.ncbi.nlm.nih.gov/gene/?term=YE1398
YE1399	YE1399		YE1399	1569021	1570175	-	hypothetical protein		gene	gene1396	http://www.ncbi.nlm.nih.gov/gene/?term=YE1399
YE1400	YE1400		YE1400	1570728	1571242	+			gene	gene1397	http://www.ncbi.nlm.nih.gov/gene/?term=YE1400
YE1401	YE1401	meoA	meoA	1571842	1573016	+	outer membrane porin protein C	allows for ions and hydrophilic solutes to cross the outer membrane	gene	gene1399	http://www.ncbi.nlm.nih.gov/gene/?term=YE1401
YE1402	YE1402	ampH	ampH	1573531	1574673	-	beta-lactam binding protein AmpH	this protein has no known enzymatic function	gene	gene1402	http://www.ncbi.nlm.nih.gov/gene/?term=YE1402
YE1403	YE1403		YE1403	1574853	1576325	-	transport protein		gene	gene1403	http://www.ncbi.nlm.nih.gov/gene/?term=YE1403
YE1404	YE1404		YE1404	1576769	1577782	+	hypothetical protein		gene	gene1404	http://www.ncbi.nlm.nih.gov/gene/?term=YE1404
YE1405	YE1405	cheD2	cheD2	1577852	1579639	-	methyl-accepting chemotaxis protein		gene	gene1405	http://www.ncbi.nlm.nih.gov/gene/?term=YE1405
YE1406	YE1406		YE1406	1579969	1580899	-			gene	gene1406	http://www.ncbi.nlm.nih.gov/gene/?term=YE1406
YE1408	YE1408	dinI	dinI	1581064	1581306	-	stress response protein		gene	gene1407	http://www.ncbi.nlm.nih.gov/gene/?term=YE1408
YE1409	YE1409		YE1409	1581739	1582461	-	prophage repressor protein		gene	gene1408	http://www.ncbi.nlm.nih.gov/gene/?term=YE1409
YE1410	YE1410		YE1410	1582736	1583215	+	phage antitermination protein Q		gene	gene1409	http://www.ncbi.nlm.nih.gov/gene/?term=YE1410
YE1411	YE1411		YE1411	1583325	1583603	+	bacteriophage protein		gene	gene1410	http://www.ncbi.nlm.nih.gov/gene/?term=YE1411
YE1412	YE1412		YE1412	1583600	1584236	+			gene	gene1411	http://www.ncbi.nlm.nih.gov/gene/?term=YE1412
YE1414	YE1414	tpn1330	tpn1330	1584441	1585634	+	transposase for IS1330	Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:Q8RSF5 (EMBL:AJ344215) (397 aa) fasta scores: E(): 2e-162%2C 98.74 id in 397 aa. Also similar to Shigella flexneri%2C and Shigella flexneri 2A IS10 orf S0034 or Cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 8.6e-114%2C68.51 38d in 397 aa	gene	gene1412	http://www.ncbi.nlm.nih.gov/gene/?term=YE1414
YE1415	YE1415		YE1415	1585808	1586548	+	LacI family regulatory protein		gene	gene1413	http://www.ncbi.nlm.nih.gov/gene/?term=YE1415
YE1416	YE1416		YE1416	1586713	1588254	+	PTS system permease	Similar to Erwinia chrysanthemi PTS system%2Cbeta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 5.8e-33%2C 36.24 38d in 516 aa%2C and to Lactobacillus plantarum permease BglP SWALL:Q9L461 (EMBL:AJ250202) (577 aa) fasta scores: E(): 3.9e-41%2C 39.22 38d in 515 aa	gene	gene1414	http://www.ncbi.nlm.nih.gov/gene/?term=YE1416
YE1417	YE1417	bglA	bglA	1588343	1589779	+	6-phospho-beta-glucosidase		gene	gene1415	http://www.ncbi.nlm.nih.gov/gene/?term=YE1417
YE1418	YE1418		YE1418	1590524	1591555	-	O-methyltransferase	Similar to many O-methyltransferases including: Streptomyces lipmanii O-demethylpuromycin-o-methyltransferase DmpM SWALL:DMPM_STRLP (SWALL:P42712) (376 aa) fasta scores: E(): 6.6e-26%2C 32.64 38d in 337 aa%2C Streptomyces avermitilis O-methyltransferase SWALL:Q93HA8 (EMBL:AB070947) (359 aa) fasta scores: E(): 5.4e-22%2C29.74 38d in 316 aa and Pseudomonas aeruginosa probable O-methyltransferase Pa4209 SWALL:Q9HWH2 (EMBL:AE004837) (334 aa) fasta scores: E(): 3.3e-20%2C 29.44 38d in 343 aa	gene	gene1416	http://www.ncbi.nlm.nih.gov/gene/?term=YE1418
YE1419	YE1419		YE1419	1592097	1593890	-	hypothetical protein		gene	gene1418	http://www.ncbi.nlm.nih.gov/gene/?term=YE1419
YE1420	YE1420		YE1420	1593918	1594145	-	hypothetical protein		gene	gene1419	http://www.ncbi.nlm.nih.gov/gene/?term=YE1420
YE1421	YE1421		YE1421	1594323	1595324	+	nucleoid-associated protein NdpA		gene	gene1420	http://www.ncbi.nlm.nih.gov/gene/?term=YE1421
YE1422	YE1422	rplY	rplY	1595406	1595693	-	50S ribosomal protein L25	the Ctc family of proteins consists of two types%2C one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response	gene	gene1421	http://www.ncbi.nlm.nih.gov/gene/?term=YE1422
YE1423	YE1423		YE1423	1595855	1597612	-	DEAD/DEAH box helicase		gene	gene1422	http://www.ncbi.nlm.nih.gov/gene/?term=YE1423
YE1424	YE1424	rsuA	rsuA	1597953	1598660	+	16S rRNA pseudouridylate synthase A	catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA	gene	gene1423	http://www.ncbi.nlm.nih.gov/gene/?term=YE1424
YE1425	YE1425	bcr	bcr	1598810	1599982	+	bicyclomycin/multidrug efflux system protein	Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance	gene	gene1424	http://www.ncbi.nlm.nih.gov/gene/?term=YE1425
YE1426	YE1426		YE1426	1600698	1601045	+	hypothetical protein		gene	gene1425	http://www.ncbi.nlm.nih.gov/gene/?term=YE1426
YE1427	YE1427		YE1427	1601117	1602709	-	ABC transporter ATP-binding protein		gene	gene1426	http://www.ncbi.nlm.nih.gov/gene/?term=YE1427
YE1428	YE1428		YE1428	1602711	1603739	-	ABC transporter integral membrane protein		gene	gene1427	http://www.ncbi.nlm.nih.gov/gene/?term=YE1428
YE1429	YE1429		YE1429	1603736	1604836	-	ABC transporter integral membrane protein		gene	gene1428	http://www.ncbi.nlm.nih.gov/gene/?term=YE1429
YE1430	YE1430		YE1430	1604846	1606654	-	substrate-binding transport protein		gene	gene1429	http://www.ncbi.nlm.nih.gov/gene/?term=YE1430
YE1431	YE1431		YE1431	1606753	1608315	-	hypothetical protein		gene	gene1430	http://www.ncbi.nlm.nih.gov/gene/?term=YE1431
YE1432	YE1432		YE1432	1608604	1608813	+	hypothetical protein	doubtful CDS with no significant database hits	gene	gene1431	http://www.ncbi.nlm.nih.gov/gene/?term=YE1432
YE1433	YE1433	spr	spr	1608821	1609405	-	outer membrane lipoprotein	by similarity%2C Spr seems to have peptidase activity%3B involved in thermoresistance	gene	gene1432	http://www.ncbi.nlm.nih.gov/gene/?term=YE1433
YE1434	YE1434		YE1434	1609784	1610485	-	hypothetical protein		gene	gene1433	http://www.ncbi.nlm.nih.gov/gene/?term=YE1434
YE1435	YE1435		YE1435	1610549	1611532	-	cobalamin synthesis protein		gene	gene1434	http://www.ncbi.nlm.nih.gov/gene/?term=YE1435
YE1436	YE1436		YE1436	1611844	1612170	+	hypothetical protein		gene	gene1435	http://www.ncbi.nlm.nih.gov/gene/?term=YE1436
YE1437	YE1437		YE1437	1612378	1613121	+	transcriptional regulatory protein		gene	gene1436	http://www.ncbi.nlm.nih.gov/gene/?term=YE1437
YE1438	YE1438		YE1438	1613415	1614887	-	D-mannonate oxidoreductase		gene	gene1437	http://www.ncbi.nlm.nih.gov/gene/?term=YE1438
YE1440	YE1440	uxuA	uxuA	1615332	1616522	+	mannonate dehydratase	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate	gene	gene1438	http://www.ncbi.nlm.nih.gov/gene/?term=YE1440
YE1441	YE1441		YE1441	1616709	1617281	-	elongation factor P	Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro%2C suggesting its involvement in the formation of the first peptide bond of a protein	gene	gene1439	http://www.ncbi.nlm.nih.gov/gene/?term=YE1441
YE1442	YE1442	mtr	mtr	1617394	1618638	-	tryptophan-specific transport protein		gene	gene1440	http://www.ncbi.nlm.nih.gov/gene/?term=YE1442
YE1443	YE1443		YE1443	1618976	1619230	+	hypothetical protein		gene	gene1441	http://www.ncbi.nlm.nih.gov/gene/?term=YE1443
YE1444	YE1444	torA	torA	1619402	1621882	-	molybdopterin-containing oxidoreductase	Highly similar to many oxidoreductases including: Rhodobacter capsulatus dimethyl sulfoxide reductase precursor DorA SWALL:DMSA_RHOCA (SWALL:Q52675) (823 aa) fasta scores: E(): 4.1e-167%2C 51.97 38d in 837 aa and Escherichia coli trimethylamine-N-oxide reductase 1 precursor TorA or b0997 SWALL:TORA_ECOLI (SWALL:P33225) (848 aa) fasta scores: E(): 1.7e-105%2C 47.01 38d in 836 aa	gene	gene1442	http://www.ncbi.nlm.nih.gov/gene/?term=YE1444
YE1445	YE1445	torC	torC	1621896	1623044	-	cytochrome C-type protein	Similar to Escherichia coli cytochrome C-type protein TorC or b0996 SWALL:TORC_ECOLI (SWALL:P33226) (390 aa) fasta scores: E(): 4e-55%2C 41.5 38d in 371 aa%2C and to Escherichia coli cytochrome C-type protein TorY or b1873 SWALL:TORY_ECOLI (SWALL:P52005) (366 aa) fasta scores: E(): 3.4e-55%2C 44.56 38d in 377 aa	gene	gene1443	http://www.ncbi.nlm.nih.gov/gene/?term=YE1445
YE1446	YE1446		YE1446	1623346	1623768	-	Mut family protein		gene	gene1444	http://www.ncbi.nlm.nih.gov/gene/?term=YE1446
YE1447	YE1447	fpr	fpr	1624049	1625182	+	bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein	phosphoenolpyruvate (PEP)-dependent%2C sugar transporting phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr	gene	gene1445	http://www.ncbi.nlm.nih.gov/gene/?term=YE1447
YE1448	YE1448	fruK	fruK	1625179	1626117	+	1-phosphofructokinase	converts fructose-1-phosphate and ATP to fructose-1%2C6-bisphosphate and ADP%3B highly specific for fructose-1-phopshate%3B similar to PfkB%3B forms homodimers	gene	gene1446	http://www.ncbi.nlm.nih.gov/gene/?term=YE1448
YE1449	YE1449	fruA	fruA	1626132	1627817	+	PTS system fructose-specific transporter subunit IIBC	phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel	gene	gene1447	http://www.ncbi.nlm.nih.gov/gene/?term=YE1449
YE1450	YE1450	myfE	myfE	1628085	1628750	+	regulatory protein		gene	gene1448	http://www.ncbi.nlm.nih.gov/gene/?term=YE1450
YE1451	YE1451	myfF	myfF	1628747	1629238	+	hypothetical protein		gene	gene1449	http://www.ncbi.nlm.nih.gov/gene/?term=YE1451
YE1452	YE1452	myfA	myfA	1629499	1629978	+	adhesin		gene	gene1450	http://www.ncbi.nlm.nih.gov/gene/?term=YE1452
YE1453	YE1453	myfB	myfB	1630111	1630914	+	chaperone protein		gene	gene1451	http://www.ncbi.nlm.nih.gov/gene/?term=YE1453
YE1454	YE1454	myfC	myfC	1631151	1633487	+	outer membrane usher protein		gene	gene1452	http://www.ncbi.nlm.nih.gov/gene/?term=YE1454
YE1455	YE1455	nfo	nfo	1633555	1634400	-	endonuclease IV	Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues	gene	gene1453	http://www.ncbi.nlm.nih.gov/gene/?term=YE1455
YE1456	YE1456		YE1456	1634531	1635544	-	hypothetical protein		gene	gene1454	http://www.ncbi.nlm.nih.gov/gene/?term=YE1456
YE1457	YE1457		YE1457	1636174	1637046	+	DNA-binding transcriptional regulator		gene	gene1455	http://www.ncbi.nlm.nih.gov/gene/?term=YE1457
YE1458	YE1458	cadR	cadR	1637291	1638817	+	lysine transporter		gene	gene1456	http://www.ncbi.nlm.nih.gov/gene/?term=YE1458
YE1459	YE1459		YE1459	1639092	1640174	+	iron ABC transporter		gene	gene1457	http://www.ncbi.nlm.nih.gov/gene/?term=YE1459
YE1460	YE1460		YE1460	1640171	1640959	+	siderophore ABC transporter ATP-binding protein		gene	gene1458	http://www.ncbi.nlm.nih.gov/gene/?term=YE1460
YE1461	YE1461		YE1461	1641183	1643156	+	outer membrane receptor	YiuR%3B outer membrane siderophore receptor	gene	gene1459	http://www.ncbi.nlm.nih.gov/gene/?term=YE1461
YE1463	YE1463		YE1463	1643551	1644171	-	glutathione S-transferase-family protein		gene	gene1460	http://www.ncbi.nlm.nih.gov/gene/?term=YE1463
YE1464	YE1464		YE1464	1644190	1644849	-	hydrolase		gene	gene1461	http://www.ncbi.nlm.nih.gov/gene/?term=YE1464
YE1465	YE1465		YE1465	1645367	1646377	+	iron/ascorbate oxidoreductase family protein		gene	gene1462	http://www.ncbi.nlm.nih.gov/gene/?term=YE1465
YE1466	YE1466		YE1466	1646430	1647254	+	hypothetical protein		gene	gene1463	http://www.ncbi.nlm.nih.gov/gene/?term=YE1466
YE1467	YE1467		YE1467	1647251	1648237	+	ABC transport ATP-binding subunit		gene	gene1464	http://www.ncbi.nlm.nih.gov/gene/?term=YE1467
YE1468	YE1468		YE1468	1648234	1648905	+	ABC transport integral membrane subunit		gene	gene1465	http://www.ncbi.nlm.nih.gov/gene/?term=YE1468
YE1469	YE1469	metB	metB	1649022	1650167	-	cystathionine gamma-synthase	Similar to Xanthomonas campestris cystathionine gamma-synthase UptH SWALL:Q93S80 (EMBL:AF204145) (399 aa) fasta scores: E(): 3.8e-91%2C 63.73 38d in 375 aa and to Helicobacter pylori cystathionine gamma-synthase MetB or hp0106 SWALL:METB_HELPY (SWALL:P56069) (380 aa) fasta scores: E(): 4.5e-71%2C 53.43 38d in 378 aa	gene	gene1466	http://www.ncbi.nlm.nih.gov/gene/?term=YE1469
YE1470	YE1470	uptG	uptG	1650193	1651560	-	cystathionine beta-lyase	Similar to Xanthomonas campestris cystathionine beta-lyase UptG SWALL:Q93S79 (EMBL:AF204145) (456 aa) fasta scores: E(): 3.4e-107%2C 60.22 38d in 455 aa and to Pseudomonas aeruginosa cystathionine beta-synthase Pa0399 SWALL:Q9I6A1 (EMBL:AE004477) (457 aa) fasta scores: E(): 1.1e-108%2C 62.22 38d in 450 aa	gene	gene1467	http://www.ncbi.nlm.nih.gov/gene/?term=YE1470
YE1471	YE1471	dacC	dacC	1651953	1653170	+	D-alanyl-D-alanine carboxypeptidase		gene	gene1468	http://www.ncbi.nlm.nih.gov/gene/?term=YE1471
YE1472	YE1472	sdaB	sdaB	1653406	1654773	-	L-serine dehydratase 2	Similar to Escherichia coli L-serine dehydratase 2 SdaB or b2797 SWALL:SDHM_ECOLI (SWALL:P30744) (455 aa) fasta scores: E(): 6.7e-151%2C 81.31 38d in 455 aa and to Escherichia coli L-serine dehydratase 1 SdaA or b1814 SWALL:SDHL_ECOLI (SWALL:P16095) (454 aa) fasta scores: E(): 5.8e-145%2C 76.92 38d in 455 aa. Note this CDS is also highly similar to YE1779 76.044 38dentity in 455 aa overlap	gene	gene1469	http://www.ncbi.nlm.nih.gov/gene/?term=YE1472
YE1473	YE1473	b2796	b2796	1654919	1656214	-	serine transporter		gene	gene1470	http://www.ncbi.nlm.nih.gov/gene/?term=YE1473
YE1474	YE1474	deoR	deoR	1657474	1658238	-	DNA-binding transcriptional repressor DeoR		gene	gene1471	http://www.ncbi.nlm.nih.gov/gene/?term=YE1474
YE1475	YE1475	deoC	deoC	1658556	1659227	-	deoxyribose-phosphate aldolase	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate	gene	gene1472	http://www.ncbi.nlm.nih.gov/gene/?term=YE1475
YE1476	YE1476		YE1476	1659502	1660098	-	undecaprenyl pyrophosphate phosphatase		gene	gene1473	http://www.ncbi.nlm.nih.gov/gene/?term=YE1476
YE1477	YE1477		YE1477	1660107	1660877	-	hypothetical protein		gene	gene1474	http://www.ncbi.nlm.nih.gov/gene/?term=YE1477
YE1478	YE1478		YE1478	1661151	1662839	-	hypothetical protein		gene	gene1476	http://www.ncbi.nlm.nih.gov/gene/?term=YE1478
YE1479	YE1479	grxA	grxA	1663249	1663512	-	glutaredoxin	functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase%3B also involved in reducing some disulfides in a coupled system with glutathione reductase	gene	gene1477	http://www.ncbi.nlm.nih.gov/gene/?term=YE1479
YE1481	YE1481		YE1481	1663827	1664135	+	hypothetical protein	YbjC%3B located in the same operon as the nfsA gene%3B member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress%3B induced by paraquat%3B regulated by SoxS%3B unknown function	gene	gene1478	http://www.ncbi.nlm.nih.gov/gene/?term=YE1481
YE1483	YE1483		YE1483	1664254	1664739	+	hypothetical protein		gene	gene1479	http://www.ncbi.nlm.nih.gov/gene/?term=YE1483
YE1484	YE1484	potF	potF	1665185	1666294	+	putrescine ABC transporter substrate-binding protein		gene	gene1480	http://www.ncbi.nlm.nih.gov/gene/?term=YE1484
YE1485	YE1485	potG	potG	1666461	1667594	+	putrescine ABC transporter ATP-binding protein	part of the PotFGHI ATP-dependent putrescine transporter	gene	gene1481	http://www.ncbi.nlm.nih.gov/gene/?term=YE1485
YE1486	YE1486	potH	potH	1667631	1668596	+	putrescine ABC transporter membrane protein		gene	gene1482	http://www.ncbi.nlm.nih.gov/gene/?term=YE1486
YE1487	YE1487	potI	potI	1668593	1669438	+	putrescine ABC transporter membrane protein		gene	gene1483	http://www.ncbi.nlm.nih.gov/gene/?term=YE1487
YE1488	YE1488		YE1488	1669588	1670066	+			gene	gene1484	http://www.ncbi.nlm.nih.gov/gene/?term=YE1488
YE1490	YE1490	rumB	rumB	1670155	1671282	+	23S rRNA methyluridine methyltransferase	RNA uridine methyltransferase B%3B catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA	gene	gene1485	http://www.ncbi.nlm.nih.gov/gene/?term=YE1490
YE1491	YE1491	artJ	artJ	1671408	1672157	-	arginine/ornithine ABC transporter substrate-binding protein		gene	gene1486	http://www.ncbi.nlm.nih.gov/gene/?term=YE1491
YE1493	YE1493	artM	artM	1672976	1673644	-	arginine transporter permease subunit ArtM	with ArtPQJI acts to transport arginine across the inner membrane	gene	gene1487	http://www.ncbi.nlm.nih.gov/gene/?term=YE1493
YE1494	YE1494	artQ	artQ	1673644	1674360	-	arginine transporter permease subunit ArtQ	with ArtPMJI transports arginine across the inner membrane	gene	gene1488	http://www.ncbi.nlm.nih.gov/gene/?term=YE1494
YE1495	YE1495	artI	artI	1674372	1675103	-	arginine/ornithine ABC transporter substrate-binding protein		gene	gene1489	http://www.ncbi.nlm.nih.gov/gene/?term=YE1495
YE1496	YE1496	artP	artP	1675124	1675852	-	arginine transporter ATP-binding subunit	With ArtMQJI transports arginine across the inner membrane	gene	gene1490	http://www.ncbi.nlm.nih.gov/gene/?term=YE1496
YE1502	YE1502		YE1502	1676695	1677270	-	lipoprotein	induced during stationary phase and by acivicin (a glutamine analog)%3B regulated by Lrp and RpoS	gene	gene1491	http://www.ncbi.nlm.nih.gov/gene/?term=YE1502
YE1503	YE1503		YE1503	1677339	1678349	-	hypothetical protein		gene	gene1492	http://www.ncbi.nlm.nih.gov/gene/?term=YE1503
YE1504	YE1504		YE1504	1678678	1680135	-	hypothetical protein		gene	gene1493	http://www.ncbi.nlm.nih.gov/gene/?term=YE1504
YE1505	YE1505	ltaA	ltaA	1680132	1681151	-	L-threonine aldolase	low- specificity%3B catalyzes the formation of acetaldehyde and glycine from L-threonine%3B acts on L-threonine%2C L-allo-threonine%2C L-threo-phenylserine%2C and L-erythro-phenylserine	gene	gene1494	http://www.ncbi.nlm.nih.gov/gene/?term=YE1505
YE1506	YE1506		YE1506	1681290	1682177	-	hypothetical protein	Weakly similar to Methanosarcina acetivorans hypothetical protein Ma2745 SWALL:AAM06123 (EMBL:AE010973) (305 aa) fasta scores: E(): 6.4e-19%2C 27.83 38d in 291 aa and to Mycobacterium tuberculosis hypothetical protein Rv2751 or mtv002.16 SWALL:O33293 (EMBL:AL008967) (296 aa) fasta scores: E(): 2.8e-12%2C 26.25 38d in 240 aa	gene	gene1495	http://www.ncbi.nlm.nih.gov/gene/?term=YE1506
YE1507	YE1507	poxB	poxB	1682410	1684131	-	pyruvate dehydrogenase	catalyzes the formation of acetate from pyruvate	gene	gene1496	http://www.ncbi.nlm.nih.gov/gene/?term=YE1507
YE1509	YE1509	hcr	hcr	1684399	1685421	-	HCP oxidoreductase		gene	gene1497	http://www.ncbi.nlm.nih.gov/gene/?term=YE1509
YE1510	YE1510	hcp	hcp	1685515	1687167	-	hydroxylamine reductase	catalyzes the reduction of hydroxylamine to ammonia and water	gene	gene1498	http://www.ncbi.nlm.nih.gov/gene/?term=YE1510
YE1511	YE1511		YE1511	1687364	1688263	-	hypothetical protein		gene	gene1499	http://www.ncbi.nlm.nih.gov/gene/?term=YE1511
YE1512	YE1512		YE1512	1688517	1690181	+	hypothetical protein		gene	gene1500	http://www.ncbi.nlm.nih.gov/gene/?term=YE1512
YE1513	YE1513		YE1513	1690178	1691161	-	virulence factor		gene	gene1501	http://www.ncbi.nlm.nih.gov/gene/?term=YE1513
YE1514	YE1514		YE1514	1691350	1692465	+	macrolide transporter subunit MacA	confers macrolide resistance via active drug efflux	gene	gene1502	http://www.ncbi.nlm.nih.gov/gene/?term=YE1514
YE1515	YE1515		YE1515	1692465	1694414	+	macrolide transporter ATP-binding /permease	with MacA is involved in the export of macrolide	gene	gene1503	http://www.ncbi.nlm.nih.gov/gene/?term=YE1515
YE1516	YE1516	cspD	cspD	1694613	1694870	-	cold shock-like protein	Similar to Escherichia coli%2C and Escherichia coli O157:H7 cold shock-like protein CspD cspD or cspH or b0880 or z1117 or ecs0966 SWALL:CSPD_ECOLI (SWALL:P24245) (74 aa) fasta scores: E(): 3.1e-25%2C 84.93 38d in 73 aa%2C and to Yersinia pestis cold shock-like protein cspD or ypo1366 SWALL:Q8ZGD6 (EMBL:AJ414148) (87 aa) fasta scores: E(): 7.9e-28%2C 83.9 38d in 87 aa%2C and to Salmonella typhimurium%2Cand Salmonella typhi similar to cspA but not cold shock induced cspD or stm0943 or sty0940 SWALL:Q8XFS1 (EMBL:AE008740) (73 aa) fasta scores: E(): 9.5e-26%2C 88.88 id in 72 aa	gene	gene1504	http://www.ncbi.nlm.nih.gov/gene/?term=YE1516
YE1517	YE1517	clpS	clpS	1695230	1695550	+	ATP-dependent Clp protease adaptor protein ClpS	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation%3B binds to the N-terminal domain of the chaperone ClpA	gene	gene1505	http://www.ncbi.nlm.nih.gov/gene/?term=YE1517
YE1518	YE1518	clpA	clpA	1695576	1697852	+	ATP-dependent Clp protease ATP-binding subunit	ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease%3B directs protease to specific substrates	gene	gene1506	http://www.ncbi.nlm.nih.gov/gene/?term=YE1518
YE1519	YE1519	infA	infA	1698097	1698315	-	translation initiation factor IF-1	stimulates the activities of the other two initiation factors%2C IF-2 and IF-3	gene	gene1507	http://www.ncbi.nlm.nih.gov/gene/?term=YE1519
YE1520	YE1520	aat	aat	1698481	1699191	-	leucyl/phenylalanyl-tRNA--protein transferase	leucyltransferase%3B phenylalanyltransferse%3B functions in the N-end rule pathway%3B transfers Leu%2C Phe%2C Met%2C from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys	gene	gene1508	http://www.ncbi.nlm.nih.gov/gene/?term=YE1520
YE1521	YE1521	cydC	cydC	1699549	1701273	-	cysteine/glutathione ABC transporter membrane/ATP-binding protein	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c	gene	gene1509	http://www.ncbi.nlm.nih.gov/gene/?term=YE1521
YE1522	YE1522	cydD	cydD	1701276	1703042	-	cysteine/glutathione ABC transporter membrane/ATP-binding protein	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c	gene	gene1510	http://www.ncbi.nlm.nih.gov/gene/?term=YE1522
YE1523	YE1523	trxB	trxB	1703317	1704291	-	thioredoxin reductase		gene	gene1511	http://www.ncbi.nlm.nih.gov/gene/?term=YE1523
YE1524	YE1524	alsB	alsB	1705062	1705556	+	leucine-responsive transcriptional regulator	mediates a global response to leucine%3B acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system	gene	gene1512	http://www.ncbi.nlm.nih.gov/gene/?term=YE1524
YE1525	YE1525	ftsK	ftsK	1705678	1709298	+	cell division protein		gene	gene1513	http://www.ncbi.nlm.nih.gov/gene/?term=YE1525
YE1526	YE1526	lolA	lolA	1709690	1710301	+	outer-membrane lipoprotein carrier protein	participates with LolB in the incorporation of lipoprotein into the outer membrane	gene	gene1514	http://www.ncbi.nlm.nih.gov/gene/?term=YE1526
YE1527	YE1527		YE1527	1710309	1711652	+	recombination factor protein RarA		gene	gene1515	http://www.ncbi.nlm.nih.gov/gene/?term=YE1527
YE1528	YE1528	serS	serS	1711824	1713116	+	seryl-tRNA synthetase	catalyzes a two-step reaction%2C first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA	gene	gene1516	http://www.ncbi.nlm.nih.gov/gene/?term=YE1528
YE1529	YE1529		YE1529	1713540	1714559	-	transposase for IS1667	Similar to Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 1.8e-56%2C 45.64 38d in 344 aa and to Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 3.7e-50%2C 42.16 38d in 332 aa	gene	gene1517	http://www.ncbi.nlm.nih.gov/gene/?term=YE1529
YE1530	YE1530		YE1530	1714890	1716038	+	MFS family transporter protein		gene	gene1518	http://www.ncbi.nlm.nih.gov/gene/?term=YE1530
YE1531	YE1531	pflA	pflA	1716116	1716763	-	pyruvate formate lyase-activating enzyme 1	activates pyruvate formate-lyase 1 under anaerobic conditions	gene	gene1519	http://www.ncbi.nlm.nih.gov/gene/?term=YE1531
YE1532	YE1532	pfl	pfl	1716935	1719217	-	formate acetyltransferase 1		gene	gene1520	http://www.ncbi.nlm.nih.gov/gene/?term=YE1532
YE1533	YE1533	focA	focA	1719270	1720127	-	formate transporter		gene	gene1521	http://www.ncbi.nlm.nih.gov/gene/?term=YE1533
YE1534	YE1534		YE1534	1720943	1722709	-	hypothetical protein		gene	gene1522	http://www.ncbi.nlm.nih.gov/gene/?term=YE1534
YE1535	YE1535	ansB	ansB	1722858	1723895	+	L-asparaginase II	catalyzes the formation of aspartate from asparagine%2C periplasmic%3B regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis	gene	gene1523	http://www.ncbi.nlm.nih.gov/gene/?term=YE1535
YE1536	YE1536		YE1536	1724041	1724733	+	inner membrane protein	Similar to many proteins of undefined function including: Escherichia coli hypothetical protein YcaP or b0906 SWALL:YCAP_ECOLI (SWALL:P75839) (230 aa) fasta scores: E(): 2.3e-52%2C 57.89 38d in 228 aa and Salmonella typhimurium putative inner membrane protein YcaP or stm0976 SWALL:Q8ZQC6 (EMBL:AE008742) (230 aa) fasta scores: E(): 3.1e-52%2C 57.01 38d in 228 aa	gene	gene1524	http://www.ncbi.nlm.nih.gov/gene/?term=YE1536
YE1537	YE1537	serC	serC	1724940	1726025	+	phosphoserine aminotransferase	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate%3B required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine	gene	gene1525	http://www.ncbi.nlm.nih.gov/gene/?term=YE1537
YE1538	YE1538	aroA	aroA	1726121	1727407	+	3-phosphoshikimate 1-carboxyvinyltransferase	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis	gene	gene1526	http://www.ncbi.nlm.nih.gov/gene/?term=YE1538
YE1539	YE1539	cmk	cmk	1727647	1728339	+	cytidylate kinase	Catalyzes the formation of (d)CDP from ATP and (d)CMP	gene	gene1527	http://www.ncbi.nlm.nih.gov/gene/?term=YE1539
YE1540	YE1540	rpsA	rpsA	1728508	1730181	+	30S ribosomal protein S1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit%3B autoregulates expression via a C-terminal domain%3B in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats%3B the S1 nucleic acid-binding domain is found associated with other proteins	gene	gene1528	http://www.ncbi.nlm.nih.gov/gene/?term=YE1540
YE1541	YE1541	ihfB	ihfB	1730245	1730529	+	integration host factor subunit beta	This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control	gene	gene1529	http://www.ncbi.nlm.nih.gov/gene/?term=YE1541
YE1542	YE1542		YE1542	1730866	1733151	+	hypothetical protein		gene	gene1530	http://www.ncbi.nlm.nih.gov/gene/?term=YE1542
YE1543	YE1543	msbA	msbA	1733187	1734935	+	lipid transporter ATP-binding/permease	involved in the transport of lipid A across the inner membrane	gene	gene1531	http://www.ncbi.nlm.nih.gov/gene/?term=YE1543
YE1544	YE1544	lpxK	lpxK	1734932	1735918	+	tetraacyldisaccharide 4'-kinase	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1%2C4'-bis-phosphate	gene	gene1532	http://www.ncbi.nlm.nih.gov/gene/?term=YE1544
YE1545	YE1545		YE1545	1735925	1737274	-	hypothetical protein		gene	gene1533	http://www.ncbi.nlm.nih.gov/gene/?term=YE1545
YE1546	YE1546	cspE2	cspE2	1737791	1738000	+	cold shock protein CspE2	Similar to Escherichia coli%2C and Escherichia coli O157:H7 cold shock-like protein cspE or msmC or gicA or b0623 or z0769 or ecs0662 SWALL:CSPE_ECOLI (SWALL:P36997) (68 aa) fasta scores: E(): 3.1e-18%2C 72.05 38d in 68 aa and to Vibrio cholerae hypothetical protein SWALL:AAC72388 (EMBL:AF098260) (69 aa) fasta scores: E(): 9.5e-19%2C 72.46 id in 69 aa%2C and to Yersinia pestis putative cold shock protein cspE or ypo2595 SWALL:Q8ZDH3 (EMBL:AJ414153) (69 aa) fasta scores: E(): 9.5e-19%2C 71.01 38d in 69 aa	gene	gene1534	http://www.ncbi.nlm.nih.gov/gene/?term=YE1546
YE1547	YE1547	cspB	cspB	1738217	1738426	+	cold shock-like protein CspE3	Similar to Escherichia coli%2C and Escherichia coli O157:H7 cold shock-like protein CspE cspE or msmC or gicA or b0623 or z0769 or ecs0662 SWALL:CSPE_ECOLI (SWALL:P36997) (68 aa) fasta scores: E(): 1.4e-11%2C 56.25 id in 64 aa%2C and to Yersinia pestis cold shock-like protein cspB or ypo1398 SWALL:Q8ZGA6 (EMBL:AJ414148) (69 aa) fasta scores: E(): 3.8e-26%2C 94.2 38d in 69 aa%2C and to Yersinia pestis putative cold shock protein cspE or ypo2595 SWALL:Q8ZDH3 (EMBL:AJ414153) (69 aa) fasta scores: E(): 4.3e-12%2C 55.88 38d in 68 aa	gene	gene1535	http://www.ncbi.nlm.nih.gov/gene/?term=YE1547
YE1549	YE1549		YE1549	1739047	1739229	+	hypothetical protein		gene	gene1536	http://www.ncbi.nlm.nih.gov/gene/?term=YE1549
YE1550	YE1550	kdsB	kdsB	1739226	1739978	+	3-deoxy-manno-octulosonate cytidylyltransferase	CMP-2-keto-3-deoxyoctulosonic acid synthetase%3B catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS	gene	gene1537	http://www.ncbi.nlm.nih.gov/gene/?term=YE1550
YE1551	YE1551		YE1551	1740168	1741061	+	hypothetical protein		gene	gene1538	http://www.ncbi.nlm.nih.gov/gene/?term=YE1551
YE1552	YE1552		YE1552	1741064	1741831	-	hypothetical protein	Similar to many proteins of undefined function including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YcbC or b0920 or z1267 or ecs1003 SWALL:YCBC_ECOLI (SWALL:P36565) (259 aa) fasta scores: E(): 3e-58%2C 59.6 38d in 255 aa%2C Salmonella typhi putative membrane protein Sty0992 SWALL:Q8Z7Z8 (EMBL:AL627268) (258 aa) fasta scores: E(): 2.7e-60%2C 62.15 38d in 251 aa and Vibrio cholerae hypothetical protein Vc1718 SWALL:Q9KRC4 (EMBL:AE004250) (282 aa) fasta scores: E(): 1.9e-36%2C43.95 38d in 248 aa	gene	gene1539	http://www.ncbi.nlm.nih.gov/gene/?term=YE1552
YE1553	YE1553	smtA	smtA	1742022	1742807	+	metallothionein SmtA	involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens%3B expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc%3B NO elicits release of Zn ions from SmtA	gene	gene1540	http://www.ncbi.nlm.nih.gov/gene/?term=YE1553
YE1554	YE1554	kicB	kicB	1742804	1744126	+	condesin subunit F	acts with MukB and MukE to condense the chromosome and allow for segregation during cell division	gene	gene1541	http://www.ncbi.nlm.nih.gov/gene/?term=YE1554
YE1555	YE1555	kicA	kicA	1744134	1744835	+	condesin subunit E	acts with MukB and MukF to condense the chromosome and allow for segregation during cell division	gene	gene1542	http://www.ncbi.nlm.nih.gov/gene/?term=YE1555
YE1556	YE1556	mukB	mukB	1744832	1749277	+	cell division protein MukB	SMC (structural maintenance of chromosomes) family of proteins%3B involved in chromosome condensatin and partitioning%3B forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ%3B mutations result in cell division defects	gene	gene1543	http://www.ncbi.nlm.nih.gov/gene/?term=YE1556
YE1557	YE1557		YE1557	1749600	1751471	+	hypothetical protein		gene	gene1544	http://www.ncbi.nlm.nih.gov/gene/?term=YE1557
YE1558	YE1558		YE1558	1751730	1752278	+	hypothetical protein		gene	gene1545	http://www.ncbi.nlm.nih.gov/gene/?term=YE1558
YE1559	YE1559		YE1559	1752337	1752984	+	metallo-beta-lactamase superfamily protein		gene	gene1546	http://www.ncbi.nlm.nih.gov/gene/?term=YE1559
YE1560	YE1560		YE1560	1753283	1754812	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein Pa3825 SWALL:Q9HXH7 (EMBL:AE004800) (526 aa) fasta scores: E(): 1.3e-86%2C 45.82 38d in 515 aa%2C Escherichia coli hypothetical protein YcgG or b1168 SWALL:YCGG_ECOLI (SWALL:P75995) (507 aa) fasta scores: E(): 4.5e-51%2C 32.05 id in 496 aa%2C and Escherichia coli hypothetical protein YoaD or b1815 SWALL:YOAD_ECOLI (SWALL:P76261) (532 aa) fasta scores: E(): 3.8e-41%2C 31.34 38d in 504 aa	gene	gene1547	http://www.ncbi.nlm.nih.gov/gene/?term=YE1560
YE1561	YE1561	aspC	aspC	1755072	1756262	-	aromatic amino acid aminotransferase	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate	gene	gene1548	http://www.ncbi.nlm.nih.gov/gene/?term=YE1561
YE1562	YE1562		YE1562	1756478	1757812	-	transposase for insertion sequence element IS1660	Highly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 9.8e-166%2C89.54 38d in 440 aa and to Pantoea agglomerans insertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 1.7e-86%2C 52.42 38d in 433 aa	gene	gene1549	http://www.ncbi.nlm.nih.gov/gene/?term=YE1562
YE1563	YE1563	ompF	ompF	1757957	1759190	-	outer membrane porin F protein		gene	gene1550	http://www.ncbi.nlm.nih.gov/gene/?term=YE1563
YE1564	YE1564	asnC	asnC	1759395	1760795	-	asparaginyl-tRNA synthetase	catalyzes a two-step reaction%2C first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA	gene	gene1551	http://www.ncbi.nlm.nih.gov/gene/?term=YE1564
YE1565	YE1565	pncB	pncB	1761052	1762257	-	nicotinate phosphoribosyltransferase	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate	gene	gene1552	http://www.ncbi.nlm.nih.gov/gene/?term=YE1565
YE1567	YE1567	pepN	pepN	1762849	1765464	+	aminopeptidase N		gene	gene1553	http://www.ncbi.nlm.nih.gov/gene/?term=YE1567
YE1568	YE1568	pyrD	pyrD	1765632	1766642	+	dihydroorotate dehydrogenase 2	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors	gene	gene1554	http://www.ncbi.nlm.nih.gov/gene/?term=YE1568
YE1569	YE1569		YE1569	1766941	1767498	+	hypothetical protein		gene	gene1555	http://www.ncbi.nlm.nih.gov/gene/?term=YE1569
YE1570	YE1570		YE1570	1767514	1768626	-	iron-sulfur binding protein		gene	gene1556	http://www.ncbi.nlm.nih.gov/gene/?term=YE1570
YE1571	YE1571	rlmL	rlmL	1768726	1770846	+	23S rRNA m(2)G2445 methyltransferase	catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA	gene	gene1557	http://www.ncbi.nlm.nih.gov/gene/?term=YE1571
YE1572	YE1572	uup	uup	1770852	1772765	+	ABC transporter ATPase	Uup%3B in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity%3B mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth	gene	gene1558	http://www.ncbi.nlm.nih.gov/gene/?term=YE1572
YE1573	YE1573	pqiA	pqiA	1772984	1774201	+	paraquat-inducible protein A		gene	gene1559	http://www.ncbi.nlm.nih.gov/gene/?term=YE1573
YE1574	YE1574	pqiB	pqiB	1774215	1775840	+	paraquat-inducible protein B		gene	gene1560	http://www.ncbi.nlm.nih.gov/gene/?term=YE1574
YE1575	YE1575		YE1575	1775837	1776388	+	lipoprotein		gene	gene1561	http://www.ncbi.nlm.nih.gov/gene/?term=YE1575
YE1576	YE1576		YE1576	1776892	1778166	-	3-oxoacyl-(acyl carrier protein) synthase II	FabF%2C beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP.	gene	gene1562	http://www.ncbi.nlm.nih.gov/gene/?term=YE1576
YE1577	YE1577		YE1577	1778166	1778708	-	hypothetical protein	Similar to Rhizobium loti hypothetical protein Mll2592 SWALL:Q98I32 (EMBL:AP003000) (182 aa) fasta scores: E(): 6.9e-31%2C 49.67 38d in 153 aa and Pseudomonas aeruginosa hypothetical protein Pa1374 SWALL:Q9I3X0 (EMBL:AE004567) (168 aa) fasta scores: E(): 1.4e-30%2C49.69 38d in 163 aa	gene	gene1563	http://www.ncbi.nlm.nih.gov/gene/?term=YE1577
YE1578	YE1578	fabA	fabA	1778898	1779416	-	3-hydroxydecanoyl-ACP dehydratase	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2%2C3-decenoyl-ACP or 3%2C4-decenoyl-ACP	gene	gene1564	http://www.ncbi.nlm.nih.gov/gene/?term=YE1578
YE1579	YE1579		YE1579	1779485	1781257	-	Lon protease		gene	gene1565	http://www.ncbi.nlm.nih.gov/gene/?term=YE1579
YE1580	YE1580		YE1580	1781447	1781902	+	hypothetical protein		gene	gene1566	http://www.ncbi.nlm.nih.gov/gene/?term=YE1580
YE1581	YE1581	con	con	1782034	1783107	-	outer membrane protein A	OmpA is believed to be a porin%2C involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli%2C and it is known to play a role as a phage receptor%2C a mediator of F-factor dependent conjugation%2C and in maintaining the structural shape of the outer membrane%3B 3a%3B II*%3B G%3B d	gene	gene1567	http://www.ncbi.nlm.nih.gov/gene/?term=YE1581
YE1582	YE1582	sfiA	sfiA	1783465	1783971	-	SOS cell division inhibitor		gene	gene1568	http://www.ncbi.nlm.nih.gov/gene/?term=YE1582
YE1583	YE1583		YE1583	1784201	1784836	+	hypothetical protein		gene	gene1569	http://www.ncbi.nlm.nih.gov/gene/?term=YE1583
YE1584	YE1584		YE1584	1784873	1787008	-	hypothetical protein		gene	gene1570	http://www.ncbi.nlm.nih.gov/gene/?term=YE1584
YE1585	YE1585		YE1585	1787033	1787485	-	hypothetical protein		gene	gene1571	http://www.ncbi.nlm.nih.gov/gene/?term=YE1585
YE1586	YE1586	helD	helD	1787680	1789734	+	DNA helicase IV	catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand	gene	gene1572	http://www.ncbi.nlm.nih.gov/gene/?term=YE1586
YE1587	YE1587	mgsA	mgsA	1789797	1790255	-	methylglyoxal synthase	catalyzes the formation of methylglyoxal from glycerone phosphate	gene	gene1573	http://www.ncbi.nlm.nih.gov/gene/?term=YE1587
YE1588	YE1588		YE1588	1790459	1791127	-	hypothetical protein		gene	gene1574	http://www.ncbi.nlm.nih.gov/gene/?term=YE1588
YE1589	YE1589		YE1589	1791459	1791875	+	hypothetical protein		gene	gene1575	http://www.ncbi.nlm.nih.gov/gene/?term=YE1589
YE1590	YE1590		YE1590	1791980	1792495	+	insertion element IS1664 protein	Similar to Yersinia pestis insertion element IS1661 DNA-binding protein YPO0996 SWALL:Q8ZHA8 (EMBL:AJ414145)(178 aa) fasta scores: E(): 8.6e-14%2C 36.51 id in 178 aa%2C and to Klebsiella pneumoniae OrfA SWALL:Q9AG22 (EMBL:AF345899) (173 aa) fasta scores: E(): 1e-18%2C 40.22 38d in 174 aa	gene	gene1576	http://www.ncbi.nlm.nih.gov/gene/?term=YE1590
YE1591	YE1591		YE1591	1792531	1793349	+	transposase for IS1664 element	Similar to Yersinia pestis transposase for insertion sequence IS1661 SWALL:Q8XF80 (EMBL:AJ414160) (261 aa) fasta scores: E(): 5.9e-46%2C 50.19 38d in 257 aa. Also similar to Ralstonia solanacearum ISrsoII-transposase OrfB protein SWALL:Q8XX51 (EMBL:AL646069) (269 aa) fasta scores: E(): 7e-61%2C 58.11 38d in 265 aa%2C and to Escherichia coli putative transposase InsK for insertion sequence element IS150 SWALL:INSK_ECOLI (SWALL:P19769) (283 aa) fasta scores: E(): 7.1e-58%2C 53.43 38d in 262 aa	gene	gene1577	http://www.ncbi.nlm.nih.gov/gene/?term=YE1591
YE1592	YE1592		YE1592	1793399	1793716	-	heat shock protein HspQ		gene	gene1578	http://www.ncbi.nlm.nih.gov/gene/?term=YE1592
YE1593	YE1593		YE1593	1793779	1794963	-	hypothetical protein		gene	gene1579	http://www.ncbi.nlm.nih.gov/gene/?term=YE1593
YE1594	YE1594		YE1594	1795183	1795428	+	hypothetical protein	doubtful CDS with no significant database hits	gene	gene1580	http://www.ncbi.nlm.nih.gov/gene/?term=YE1594
YE1595	YE1595		YE1595	1795441	1795806	+	hypothetical protein	Weakly similar to Synechocystis sp. hypothetical protein Sll0939 SWALL:P72858 (EMBL:D90901) (125 aa) fasta scores: E(): 4.4e-15%2C 45.6 38d in 125 aa and Clostridium perfringens hypothetical protein Cpe0943 SWALL:Q8XLU7 (EMBL:AP003188) (114 aa) fasta scores: E(): 2.4e-05%2C28.82 38d in 111 aa	gene	gene1581	http://www.ncbi.nlm.nih.gov/gene/?term=YE1595
YE1596	YE1596		YE1596	1795826	1796104	+	acylphosphatase	catalyzes the hydrolysis of acylphosphate	gene	gene1582	http://www.ncbi.nlm.nih.gov/gene/?term=YE1596
YE1597	YE1597		YE1597	1796132	1796458	-	sulfite reductase subunit protein		gene	gene1583	http://www.ncbi.nlm.nih.gov/gene/?term=YE1597
YE1598	YE1598	yfrE	yfrE	1797221	1797400	+			gene	gene1585	http://www.ncbi.nlm.nih.gov/gene/?term=YE1598
YE1599	YE1599	yenR	yenR	1798138	1798872	+	quorum-sensing transcriptional activator		gene	gene1586	http://www.ncbi.nlm.nih.gov/gene/?term=YE1599
YE1600	YE1600	yenI	yenI	1798865	1799521	-	N-acylhomoserine lactone synthase		gene	gene1587	http://www.ncbi.nlm.nih.gov/gene/?term=YE1600
YE1601	YE1601		YE1601	1799809	1800741	+	membrane protein	Similar to Salmonella typhimurium putative permease YifZ or stm4395 SWALL:Q8ZK79 (EMBL:AE008906) (308 aa) fasta scores: E(): 6.8e-79%2C 70.55 38d in 309 aa%2C and to Yersinia pestis putative membrane protein Ypo2455 SWALL:Q8ZDV0 (EMBL:AJ414152) (232 aa) fasta scores: E(): 4.8e-70%2C 90.86 38d in 219 aa	gene	gene1588	http://www.ncbi.nlm.nih.gov/gene/?term=YE1601
YE1602	YE1602	cvrA	cvrA	1800852	1802579	-	potassium/proton antiporter	the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter%3B can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli	gene	gene1589	http://www.ncbi.nlm.nih.gov/gene/?term=YE1602
YE1603	YE1603		YE1603	1802899	1803240	-	hypothetical protein	no significant database hits	gene	gene1590	http://www.ncbi.nlm.nih.gov/gene/?term=YE1603
YE1604	YE1604	mdoC	mdoC	1803355	1804494	-	glucans biosynthesis protein	required for the transfer of succinyl residues to the glucan backbone	gene	gene1591	http://www.ncbi.nlm.nih.gov/gene/?term=YE1604
YE1605	YE1605	mdoG	mdoG	1804827	1806380	+	glucan biosynthesis protein G	involved in the biosynthesis of osmoregulated periplasmic glucans%3B required for the assembly of the polyglucose structure of glucan	gene	gene1592	http://www.ncbi.nlm.nih.gov/gene/?term=YE1605
YE1606	YE1606	mdoH	mdoH	1806418	1808955	+	glucosyltransferase MdoH	necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space	gene	gene1593	http://www.ncbi.nlm.nih.gov/gene/?term=YE1606
YE1606a	YE1606a		YE1606a	1809048	1809308	+	lipoprotein		gene	gene1594	http://www.ncbi.nlm.nih.gov/gene/?term=YE1606a
YE1609	YE1609		YE1609	1810022	1811557	-	peptide transport protein	Similar to many including: Lactococcus lactis di-/tripeptide transporter DtpT or ll0702 SWALL:DTPT_LACLA (SWALL:P36574) (497 aa) fasta scores: E(): 8.3e-54%2C 36.43 id in 516 aa and to Listeria monocytogenes hypothetical protein Lmo0555 SWALL:Q8Y9H3 (EMBL:AL591975) (492 aa) fasta scores: E(): 6.6e-58%2C 37.41 38d in 457 aa	gene	gene1596	http://www.ncbi.nlm.nih.gov/gene/?term=YE1609
YE1609a	YE1609a		YE1609a	1809326	1809760	+	hypothetical protein		gene	gene1595	http://www.ncbi.nlm.nih.gov/gene/?term=YE1609a
YE1610	YE1610		YE1610	1811991	1813235	-	MFS family transporter	Similar to many MFS-family membrane transport proteins including: Salmonella typhimurium putative MFS family transport protein YceE or Stm1154 SWALL:Q8ZQ25 (EMBL:AE008750) (404 aa) fasta scores: E(): 5.9e-124%2C81.54 38d in 401 aa and to Lactococcus lactis multi-drug resistance efflux pump PmrA or ll0666 SWALL:PMRA_LACLA (SWALL:P58120) (405 aa) fasta scores: E(): 4.8e-69%2C 46.17 id in 405 aa	gene	gene1597	http://www.ncbi.nlm.nih.gov/gene/?term=YE1610
YE1611	YE1611		YE1611	1813531	1813965	-	hypothetical protein	Weakly similar to several proteins of undefined function e.g. Vibrio cholerae hypothetical protein Vca1019 SWALL:Q9KKT1 (EMBL:AE004428) (148 aa) fasta scores: E(): 3.7e-05%2C 32.6 38d in 138 aa	gene	gene1598	http://www.ncbi.nlm.nih.gov/gene/?term=YE1611
YE1612	YE1612	htrB	htrB	1814333	1815265	-	lipid A biosynthesis lauroyl acyltransferase	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA	gene	gene1599	http://www.ncbi.nlm.nih.gov/gene/?term=YE1612
YE1613	YE1613	ttrR	ttrR	1815509	1816012	-	tetrathionate reductase complex: two-component system response regulator	Similar to many two-component system response regulators including: Salmonella typhimurium%2C Salmonella enterica subsp. enterica serovar Typhimurium%2C and Salmonella typhi tetrathionate reductase complex response regulator TtrR or stm1387 or sty1733 SWALL:Q9Z4T0 (EMBL:AJ224978) (206 aa) fasta scores: E(): 5.7e-32%2C59.37 38d in 160 aa and to Bradyrhizobium japonicum transcriptional regulatory protein FixJ SWALL:FIXJ_BRAJA (SWALL:P23221) (205 aa) fasta scores: E(): 7.3e-18%2C 44.21 id in 147 aa. Note the regulatory partner histidine kinase is adjacent to this CDS%2C YE1614.	gene	gene1600	http://www.ncbi.nlm.nih.gov/gene/?term=YE1613
YE1614	YE1614	ttrS	ttrS	1816071	1817831	-	tetrathionate reductase complex: sensory transduction histidine kinase	Similar to many two-component system histidine kinases e.g. Salmonella typhimurium tetrathionate reductase complex: sensory transduction histidine kinase TtrS or stm1386 SWALL:Q8ZPP6 (EMBL:AE008760) (592 aa) fasta scores: E(): 3.5e-117%2C 52.73 38d in 567 aa. Note the regulatory partner esponse regulator is adjacent to this CDS%2C YE1613.	gene	gene1601	http://www.ncbi.nlm.nih.gov/gene/?term=YE1614
YE1615	YE1615	ttrB	ttrB	1817970	1818704	+	tetrathionate reductase subunit B	Similar to Salmonella typhimurium%2C Salmonella enterica subsp. enterica serovar Typhimurium%2C and Salmonella typhi tetrathionate reductase subunit B TtrB or stm1385 or sty1736 SWALL:Q9Z4S8 (EMBL:AJ224978) (250 aa) fasta scores: E(): 2.4e-73%2C 74.59 38d in 244 aa%2C and to Pasteurella multocida tetrathionate reductase subunit B TtrB or pm0723 SWALL:Q9CMT5 (EMBL:AE006109) (245 aa) fasta scores: E(): 4.1e-66%2C 67.5 38d in 240 aa	gene	gene1602	http://www.ncbi.nlm.nih.gov/gene/?term=YE1615
YE1616	YE1616	ttrC	ttrC	1818701	1819786	+	tetrathionate reductase subunit C	Similar to Salmonella typhimurium%2C and Salmonella enterica subsp. enterica serovar Typhimurium tetrathionate reductase subunit C TtrC or stm1384 SWALL:Q9Z4S7 (EMBL:AJ224978) (340 aa) fasta scores: E(): 9.1e-52%2C46.47 38d in 355 aa and to Pasteurella multocida TtrC or pm0722 SWALL:Q9CMT6 (EMBL:AE006109) (349 aa) fasta scores: E(): 2.5e-30%2C 39.42 38d in 350 aa	gene	gene1603	http://www.ncbi.nlm.nih.gov/gene/?term=YE1616
YE1617	YE1617	ttrA	ttrA	1819779	1822862	+	tetrathionate reductase subunit A	Similar to Salmonella typhimurium%2C and Salmonella enterica subsp. enterica serovar Typhimurium tetrathionate reductase subunit A TtrA or stm1383 SWALL:Q9Z4S6 (EMBL:AJ224978) (1020 aa) fasta scores: E(): 0%2C 65.59 38d in 1026 aa and to Pasteurella multocida TtrA or pm0721 SWALL:Q9CMT7 (EMBL:AE006109) (1029 aa) fasta scores: E(): 0%2C 55.12 38d in 1025 aa	gene	gene1604	http://www.ncbi.nlm.nih.gov/gene/?term=YE1617
YE1619	YE1619		YE1619	1823339	1824391	+	hypothetical protein		gene	gene1605	http://www.ncbi.nlm.nih.gov/gene/?term=YE1619
YE1620	YE1620	tqsA	tqsA	1824492	1825553	+	transport protein	transport of quorum-sensing signal%3B mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes	gene	gene1606	http://www.ncbi.nlm.nih.gov/gene/?term=YE1620
YE1621	YE1621		YE1621	1826063	1826647	-	LuxR family regulatory protein		gene	gene1607	http://www.ncbi.nlm.nih.gov/gene/?term=YE1621
YE1622	YE1622	solA	solA	1826906	1828027	-	N-methyltryptophan oxidase	catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde%3B FAD-binding%3B can also catalyze the demethylation of other N-methyl amino acids	gene	gene1608	http://www.ncbi.nlm.nih.gov/gene/?term=YE1622
YE1623	YE1623	bssS	bssS	1828291	1828545	-	biofilm formation regulatory protein BssS	BssS%3B regulator of biofilm through signal secretion%3B disruption of this gene in Escherichia coli led to effects on biofilm formation%2C alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing	gene	gene1609	http://www.ncbi.nlm.nih.gov/gene/?term=YE1623
YE1624	YE1624	dinI	dinI	1828908	1829153	-	DNA damage-inducible protein I		gene	gene1610	http://www.ncbi.nlm.nih.gov/gene/?term=YE1624
YE1625	YE1625	b1062	b1062	1829270	1830316	-	dihydroorotase	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis	gene	gene1611	http://www.ncbi.nlm.nih.gov/gene/?term=YE1625
YE1626	YE1626		YE1626	1830565	1830852	+	hypothetical protein		gene	gene1612	http://www.ncbi.nlm.nih.gov/gene/?term=YE1626
YE1627	YE1627	rne	rne	1830922	1834452	-	ribonuclease E	bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein%3B forms part of the membrane-associated degradosome complex along with PNPase%2C RhlB%2C and enolase	gene	gene1613	http://www.ncbi.nlm.nih.gov/gene/?term=YE1627
YE1628	YE1628	rluC	rluC	1835029	1835988	+	23S rRNA pseudouridylate synthase C	catalyzes the transformation of uracil to pseudouracil at nucleotides U955%2C U2504%2C and U2580 in 23S rRNA	gene	gene1615	http://www.ncbi.nlm.nih.gov/gene/?term=YE1628
YE1629	YE1629		YE1629	1836039	1836620	-	Maf-like protein	Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell	gene	gene1616	http://www.ncbi.nlm.nih.gov/gene/?term=YE1629
YE1630	YE1630		YE1630	1836762	1837292	+	hypothetical protein		gene	gene1617	http://www.ncbi.nlm.nih.gov/gene/?term=YE1630
YE1631	YE1631	rpmF	rpmF	1837298	1837465	+	50S ribosomal protein L32	some L32 proteins have zinc finger motifs consisting of CXXC while others do not	gene	gene1618	http://www.ncbi.nlm.nih.gov/gene/?term=YE1631
YE1632	YE1632	plsX	plsX	1837502	1838536	+	glycerol-3-phosphate acyltransferase PlsX	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsY	gene	gene1619	http://www.ncbi.nlm.nih.gov/gene/?term=YE1632
YE1633	YE1633	fabH	fabH	1838543	1839508	+	3-oxoacyl-ACP synthase	FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs	gene	gene1620	http://www.ncbi.nlm.nih.gov/gene/?term=YE1633
YE1634	YE1634	fabD	fabD	1839562	1840491	+	malonyl CoA-acyl carrier protein transacylase		gene	gene1621	http://www.ncbi.nlm.nih.gov/gene/?term=YE1634
YE1635	YE1635	fabG	fabG	1840505	1841239	+	3-ketoacyl-ACP reductase	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis	gene	gene1622	http://www.ncbi.nlm.nih.gov/gene/?term=YE1635
YE1636	YE1636	acpP	acpP	1841393	1841629	+	acyl carrier protein	carries the fatty acid chain in fatty acid biosynthesis	gene	gene1623	http://www.ncbi.nlm.nih.gov/gene/?term=YE1636
YE1637	YE1637	fabF	fabF	1841724	1842962	+	3-oxoacyl-(acyl carrier protein) synthase II	FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP	gene	gene1624	http://www.ncbi.nlm.nih.gov/gene/?term=YE1637
YE1638	YE1638	pabC	pabC	1843200	1844024	+	4-amino-4-deoxychorismate lyase	catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate	gene	gene1625	http://www.ncbi.nlm.nih.gov/gene/?term=YE1638
YE1639	YE1639	yceG	yceG	1844086	1845111	+	hypothetical protein		gene	gene1626	http://www.ncbi.nlm.nih.gov/gene/?term=YE1639
YE1640	YE1640	tmk	tmk	1845101	1845739	+	thymidylate kinase	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)	gene	gene1627	http://www.ncbi.nlm.nih.gov/gene/?term=YE1640
YE1641	YE1641	holB	holB	1845739	1846746	+	DNA polymerase III subunit delta'	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA	gene	gene1628	http://www.ncbi.nlm.nih.gov/gene/?term=YE1641
YE1642	YE1642		YE1642	1846761	1847570	+	metallodependent hydrolase		gene	gene1629	http://www.ncbi.nlm.nih.gov/gene/?term=YE1642
YE1643	YE1643	glcA	glcA	1847878	1849311	+	PTS system glucose-specific transporter subunit IIBC	phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel	gene	gene1630	http://www.ncbi.nlm.nih.gov/gene/?term=YE1643
YE1643A	YE1643A	ogr	ogr	1849385	1849729	-	phage late control protein		gene	gene1631	http://www.ncbi.nlm.nih.gov/gene/?term=YE1643A
YE1644	YE1644	gpD	gpD	1849792	1850901	-	regulator of late gene expression	Similar to Bacteriophage P2 regulator of late gene expression%2C protein D SWALL:VPD_BPP2 (SWALL:P10312) (387 aa) fasta scores: E(): 3.4e-45%2C 47.98 38d in 373 aa%2C and to Salmonella typhi putative regulator of late gene expression Sty3702 or sty2882 SWALL:Q8XG84 (EMBL:AL627279) (366 aa) fasta scores: E(): 3.9e-71%2C 55.21 38d in 355 aa	gene	gene1632	http://www.ncbi.nlm.nih.gov/gene/?term=YE1644
YE1645	YE1645	fI	fI	1851043	1852221	+	major tail sheath protein	Similar to Bacteriophage P2 major tail sheath protein FI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 9e-86%2C 54.82 38d in 394 aa%2C and to Bacteriophage 186 similar tail sheath protein FI J SWALL:Q37844 (EMBL:U32222) (392 aa) fasta scores: E(): 9.8e-85%2C 53.7 38d in 391 aa	gene	gene1633	http://www.ncbi.nlm.nih.gov/gene/?term=YE1645
YE1646	YE1646	fII	fII	1852233	1852748	+	major tail tube protein	Similar to Bacteriophage P2 major tail tube protein FII SWALL:VPF2_BPP2 (SWALL:P22502) (171 aa) fasta scores: E(): 1.6e-29%2C 51.46 38d in 171 aa%2C and to Bacteriophage 186 similar to p2 tail tube protein FII I SWALL:Q37845 (EMBL:U32222) (173 aa) fasta scores: E(): 1.7e-28%2C 49.42 id in 174 aa	gene	gene1634	http://www.ncbi.nlm.nih.gov/gene/?term=YE1646
YE1647	YE1647	gpE	gpE	1852764	1853087	+	phage tail protein	Similar to Bacteriophage P2 phage tail protein gpE SWALL:O64313 (EMBL:AF063097) (91 aa) fasta scores: E(): 6.4e-10%2C 43.67 38d in 87 aa and to Salmonella typhi putative phage tail protein Sty3698 or sty2886 SWALL:Q8XFW3 (EMBL:AL627279) (100 aa) fasta scores: E(): 7e-10%2C 47.67 38d in 86 aa	gene	gene1636	http://www.ncbi.nlm.nih.gov/gene/?term=YE1647
YE1647A	YE1647A	gpE'	gpE'	1852764	1853215	+	phage tail protein E'	Similar to Bacteriophage P2 phage tail protein gpE SWALL:O64313 (EMBL:AF063097) (91 aa) fasta scores: E(): 6.4e-10%2C 43.67 38d in 87 aa and to Salmonella typhi putative phage tail protein Sty3698 or sty2886 SWALL:Q8XFW3 (EMBL:AL627279) (100 aa) fasta scores: E(): 7e-10%2C 47.67 38d in 86 aa	gene	gene1635	http://www.ncbi.nlm.nih.gov/gene/?term=YE1647A
YE1648	YE1648	gpT	gpT	1853219	1856430	+			gene	gene1637	http://www.ncbi.nlm.nih.gov/gene/?term=YE1648
YE1650	YE1650	gpU	gpU	1856433	1856843	+	phage tail protein	Similar to many including: Salmonella typhi putative phage tail protein Sty3701 SWALL:Q8XF01 (EMBL:AL627279) (161 aa) fasta scores: E(): 2.1e-27%2C56.71 38d in 134 aa%2C Bacteriophage P2 gpU SWALL:O64315 (EMBL:AF063097) (159 aa) fasta scores: E(): 1.3e-23%2C 50 id in 134 aa and to bacteriophage phi CTX orf26 SWALL:Q9ZXJ9 (EMBL:AB008550) (146 aa) fasta scores: E(): 4.4e-22%2C 47.76 38d in 134 aa	gene	gene1638	http://www.ncbi.nlm.nih.gov/gene/?term=YE1650
YE1651	YE1651		YE1651	1856945	1857232	+	hypothetical protein	no significant database hits	gene	gene1639	http://www.ncbi.nlm.nih.gov/gene/?term=YE1651
YE1652	YE1652		YE1652	1857369	1857551	-	hypothetical protein	no significant database hits	gene	gene1640	http://www.ncbi.nlm.nih.gov/gene/?term=YE1652
YE1653	YE1653		YE1653	1857643	1857891	-	hypothetical protein	no significant database hits	gene	gene1641	http://www.ncbi.nlm.nih.gov/gene/?term=YE1653
YE1655	YE1655		YE1655	1858406	1859353	-	transposase	Similar to many proteins%2C of undefined function%2Cthat are thought to represent a novel family of transposases%2C including: Escherichia coli hypothetical protein YhgA or b3411 SWALL:YHGA_ECOLI (SWALL:P31667) (292 aa) fasta scores: E(): 4.7e-57%2C 54.54 38d in 297 aa%2CYersinia pestis hypothetical protein Ypo0076 SWALL:Q8ZJL8 (EMBL:AJ414141) (319 aa) fasta scores: E(): 6.4e-106%2C85.58 38d in 319 aa%2C Salmonella typhimurium putative transposase Stm0479 SWALL:Q8ZRA4 (EMBL:AE008718) (311 aa) fasta scores: E(): 2.9e-61%2C 51.76 38d in 311 aa and Escherichia coli hypothetical protein YadD or b0132 SWALL:YADD_ECOLI (SWALL:P31665) (300 aa) fasta scores: E(): 6.3e-54%2C 51.17 38d in 297 aa. Additional copies of this element are represented by YE1924%2C YE1921 and YE3497. There are also two partial sequences represented by YE1656 and YE1925.	gene	gene1642	http://www.ncbi.nlm.nih.gov/gene/?term=YE1655
YE1656	YE1656		YE1656	1859520	1859696	-			gene	gene1643	http://www.ncbi.nlm.nih.gov/gene/?term=YE1656
YE1657	YE1657		YE1657	1860141	1860461	-	hypothetical protein	no significant database hits	gene	gene1644	http://www.ncbi.nlm.nih.gov/gene/?term=YE1657
YE1658	YE1658		YE1658	1860804	1861208	-	hypothetical protein	Similar to Bacteroides nodosus virulence-associated protein C VapC SWALL:Q46557 (EMBL:L31763) (135 aa) fasta scores: E(): 4e-19%2C 47.32 38d in 131 aa%2C and to Haemophilus influenzae hypothetical protein Hi0947 hi0947 SWALL:Y947_HAEIN (SWALL:P71363) (132 aa) fasta scores: E(): 1.1e-32%2C 65.15 38d in 132 aa%2C and to Rhizobium meliloti NtrR protein ntrR or ntrR1 or r02418 or smc01521 SWALL:Q9L380 (EMBL:AJ277847) (134 aa) fasta scores: E(): 7.1e-12%2C 42.1 38d in 133 aa	gene	gene1645	http://www.ncbi.nlm.nih.gov/gene/?term=YE1658
YE1659	YE1659		YE1659	1861208	1861441	-	hypothetical protein	Similar to many proteins of unknown function including: Haemophilus influenzae hypothetical protein Hi0948 SWALL:Y948_HAEIN (SWALL:Q57120) (77 aa) fasta scores: E(): 1e-13%2C 50.66 38d in 75 aa and Rhizobium meliloti hypothetical protein R02686 or smc00686 SWALL:Q92MD9 (EMBL:AL591791) (77 aa) fasta scores: E(): 6.3e-11%2C 42.85 38d in 77 aa	gene	gene1646	http://www.ncbi.nlm.nih.gov/gene/?term=YE1659
YE1661	YE1661		YE1661	1861923	1862537	-	phage tail fiber assembly protein	Similar to Escherichia coli tail fiber assembly protein homolog from lambdoid prophage E14 TfaE or b1156 SWALL:TFAE_ECOLI (SWALL:P09153) (200 aa) fasta scores: E(): 1.3e-20%2C 36 38d in 200 aa and to Yersinia pestis lambda tail fiber assembly protein G Y1053 or Ypmt1.03C SWALL:O68721 (EMBL:AF074611) (202 aa) fasta scores: E(): 9.5e-21%2C 38.74 38d in 191 aa	gene	gene1647	http://www.ncbi.nlm.nih.gov/gene/?term=YE1661
YE1662	YE1662	gpH	gpH	1862537	1863919	-	variable tail fiber protein	Similar to Salmonella typhi probable variable tail fibre protein Sty3691 SWALL:Q8Z343 (EMBL:AL627279) (504 aa) fasta scores: E(): 1.6e-38%2C 43.83 38d in 511 aa%2C and to Salmonella typhimurium fels-2 prophage: similar to tail fiber protein in phage P2 Stm2706 SWALL:Q8ZMU5 (EMBL:AE008823) (524 aa) fasta scores: E(): 2.2e-38%2C62.22 38d in 180 aa	gene	gene1648	http://www.ncbi.nlm.nih.gov/gene/?term=YE1662
YE1663	YE1663	gpI	gpI	1863916	1864458	-	phage tail protein	Similar to Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 8.4e-50%2C 66.47 38d in 173 aa%2C and to Bacteriophage 186 orf38 SWALL:Q37841 (EMBL:U32222) (176 aa) fasta scores: E(): 2.2e-47%2C 64.91 38d in 171 aa	gene	gene1649	http://www.ncbi.nlm.nih.gov/gene/?term=YE1663
YE1664	YE1664	gpJ	gpJ	1864451	1865359	-	baseplate assembly protein	Similar to Bacteriophage P2 baseplate assembly protein J SWALL:VPJ_BPP2 (SWALL:P51767) (302 aa) fasta scores: E(): 8.8e-75%2C 69.2 38d in 302 aa%2C Bacteriophage 186 P2 J homolog L SWALL:Q37840 (EMBL:U32222) (302 aa) fasta scores: E(): 2.9e-75%2C 69.53 38d in 302 aa and Salmonella typhi phage baseplate assembly protein Sty3689 SWALL:Q8Z344 (EMBL:AL627279) (302 aa) fasta scores: E(): 8.8e-75%2C 69.86 38d in 302 aa	gene	gene1650	http://www.ncbi.nlm.nih.gov/gene/?term=YE1664
YE1665	YE1665	gpW	gpW	1865356	1865706	-	baseplate assembly protein	Similar to Bacteriophage P2 baseplate assembly protein W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 1.1e-18%2C 48.18 38d in 110 aa%2C Bacteriophage 186 protein M SWALL:O80315 (EMBL:U32222) (115 aa) fasta scores: E(): 5.9e-20%2C 50.9 38d in 110 aa and Salmonella typhi phage baseplate assembly protein Sty3688 SWALL:Q8Z345 (EMBL:AL627279) (119 aa) fasta scores: E(): 2.1e-18%2C 48.21 38d in 112 aa	gene	gene1651	http://www.ncbi.nlm.nih.gov/gene/?term=YE1665
YE1666	YE1666	gpV	gpV	1865703	1866350	-	baseplate assembly protein	Similar to Bacteriophage P2 baseplate assembly protein V SWALL:VPV_BPP2 (SWALL:P31340) (211 aa) fasta scores: E(): 4.3e-32%2C 46.6 38d in 206 aa%2C Bacteriophage 186 orf32 SWALL:O80314 (EMBL:U32222) (213 aa) fasta scores: E(): 5.3e-34%2C 48.8 38d in 209 aa and to Salmonella typhi putative phage baseplate assembly protein Sty3687 SWALL:Q8Z346 (EMBL:AL627279) (192 aa) fasta scores: E(): 4e-16%2C 37.37 38d in 206 aa	gene	gene1652	http://www.ncbi.nlm.nih.gov/gene/?term=YE1666
YE1667	YE1667		YE1667	1866458	1867045	-	Fic-related phage protein	Similar to Escherichia coli cell division/filamentation protein Fic or b3361 SWALL:FIC_ECOLI (SWALL:P20605) (200 aa) fasta scores: E(): 1.8e-26%2C 37.5 38d in 192 aa and to Salmonella typhimurium cell filamentation protein Fic or stm3470 SWALL:FIC_SALTY (SWALL:P20751) (200 aa) fasta scores: E(): 3.2e-29%2C 40.1 id in 192 aa	gene	gene1653	http://www.ncbi.nlm.nih.gov/gene/?term=YE1667
YE1669	YE1669	gpS	gpS	1867324	1867941	-	tail completion protein	Similar to many bacteriophage tail completion proteins: Bacteriophage P2 tail completion protein S SWALL:VPS_BPP2 (SWALL:P36934) (150 aa) fasta scores: E(): 0.055%2C 28.92 38d in 204 aa%2C Salmonella typhi putative phage tail protein Sty3686 SWALL:Q8Z347 (EMBL:AL627279) (148 aa) fasta scores: E(): 0.003%2C 26.23 38d in 202 aa and to Salmonella typhimurium fels-2 prophage tail completion protein SWALL:Q8ZMU0 (EMBL:AE008823) (148 aa) fasta scores: E(): 0.0053%2C 27.08 38d in 192 aa	gene	gene1654	http://www.ncbi.nlm.nih.gov/gene/?term=YE1669
YE1670	YE1670	gpR	gpR	1867984	1868454	-	tail completion protein r	Similar to Bacteriophage P2 tail completion protein R SWALL:VPR_BPP2 (SWALL:P36933) (155 aa) fasta scores: E(): 1.6e-19%2C 40.26 38d in 154 aa and to Salmonella typhimurium%2C and Salmonella typhi fels-2 prophage: tail completion proteins stm2712 or sty4617 SWALL:Q8XF29 (EMBL:AE008823) (143 aa) fasta scores: E(): 3.1e-21%2C46.66 38d in 135 aa	gene	gene1655	http://www.ncbi.nlm.nih.gov/gene/?term=YE1670
YE1671	YE1671	lysB	lysB	1868553	1868978	-	phage lysin	Similar to Bacteriophage P2 protein LysB SWALL:LYSB_BPP2 (SWALL:P51770) (141 aa) fasta scores: E(): 2e-07%2C 37.39 38d in 123 aa and Salmonella typhimurium fels-2 prophage: similar to lysis protein Stm2714 SWALL:Q8ZMT8 (EMBL:AE008823) (142 aa) fasta scores: E(): 1.4e-13%2C 41.79 38d in 134 aa	gene	gene1656	http://www.ncbi.nlm.nih.gov/gene/?term=YE1671
YE1672	YE1672		YE1672	1868983	1869378	-	phagelysin	Similar to many endolysins phage related: including: Listeria innocua phagelysin Cply2438 SWALL:Q48583 (EMBL:X89234) (287 aa) fasta scores: E(): 0.022%2C 30.95 38d in 126 aa and to Bacteriophage A500 L-alanyl-D-glutamate peptidase Ply500 SWALL:AEPE_BPA50 (SWALL:Q37979) (289 aa) fasta scores: E(): 0.029%2C 30.15 id in 126 aa	gene	gene1657	http://www.ncbi.nlm.nih.gov/gene/?term=YE1672
YE1672A	YE1672A		YE1672A	1869365	1869751	-	phage holin		gene	gene1658	http://www.ncbi.nlm.nih.gov/gene/?term=YE1672A
YE1673	YE1673	gpX	gpX	1869789	1869992	-	phage tail protein	Similar to many P2-family bacteriophage tail proteins including: Bacteriophage P2 tail protein X SWALL:VPX_BPP2 (SWALL:P51772) (67 aa) fasta scores: E(): 1.4e-10%2C 55.88 38d in 68 aa%2C Salmonella typhi putative phage tail protein Sty4622 SWALL:Q8Z1F2 (EMBL:AL627283) (67 aa) fasta scores: E(): 6.1e-17%2C 65.67 38d in 67 aa and Salmonella typhimurium fels-2 prophage: similar to gpx in phage p2 stm2717 SWALL:Q8ZMT5 (EMBL:AE008823) (67 aa) fasta scores: E(): 1.6e-16%2C 64.17 38d in 67 aa	gene	gene1659	http://www.ncbi.nlm.nih.gov/gene/?term=YE1673
YE1674	YE1674	gpL	gpL	1869993	1870475	-	phage head completion/stabilization protein	Similar to Bacteriophage P2 head completion/stabilization protein L SWALL:VPL_BPP2 (SWALL:P25475) (169 aa) fasta scores: E(): 1.8e-17%2C 39.72 id in 146 aa%2C and to Salmonella typhi putative capsid completion protein Sty4623 SWALL:Q8Z1F1 (EMBL:AL627283) (154 aa) fasta scores: E(): 1.8e-21%2C 46.05 38d in 152 aa	gene	gene1660	http://www.ncbi.nlm.nih.gov/gene/?term=YE1674
YE1675	YE1675	gpM	gpM	1870596	1871306	-	phage terminase/endonuclease subunit	Similar to Bacteriophage P2 terminase%2C endonuclease subunit M SWALL:VPM_BPP2 (SWALL:P25476) (247 aa) fasta scores: E(): 1.3e-22%2C 39.36 38d in 221 aa and Ralstonia solanacearum probable bacteriophage protein rsc1936 or rs03505 SWALL:Q8XY27 (EMBL:AL646067) (240 aa) fasta scores: E(): 9.9e-28%2C 40.34 38d in 233 aa	gene	gene1661	http://www.ncbi.nlm.nih.gov/gene/?term=YE1675
YE1676	YE1676	gpN	gpN	1871335	1872381	-	major phage capsid protein	Similar to Bacteriophage P2 major capsid protein precursor N SWALL:VPN_BPP2 (SWALL:P25477) (357 aa) fasta scores: E(): 2.5e-61%2C 49.13 38d in 348 aa and Bacteriophage PhiD5 major capsid protein N SWALL:Q94MF9 (EMBL:AJ298557) (357 aa) fasta scores: E(): 1.2e-62%2C49.42 38d in 348 aa	gene	gene1662	http://www.ncbi.nlm.nih.gov/gene/?term=YE1676
YE1677	YE1677	gpO	gpO	1872414	1873268	-	phage capsid scaffolding protein	Similar to Bacteriophage P2 presumed capsid scaffolding protein O SWALL:VPO_BPP2 (SWALL:P25478) (284 aa) fasta scores: E(): 4.8e-36%2C 42.7 38d in 281 aa and to Bacteriophage 299 capsid scaffolding protein O SWALL:Q94MK3 (EMBL:AJ298566) (284 aa) fasta scores: E(): 4.2e-36%2C 43.61 38d in 282 aa	gene	gene1663	http://www.ncbi.nlm.nih.gov/gene/?term=YE1677
YE1678	YE1678	gpP	gpP	1873426	1875144	+	terminase ATPase subunit	Similar to Bacteriophage HP1 probable terminase%2CATPase subunit SWALL:VPP_BPHP1 (SWALL:P51718) (607 aa) fasta scores: E(): 5.1e-65%2C 37.05 38d in 591 aa%2CSalmonella typhi probable terminase subunit Sty4627 SWALL:Q8Z1E7 (EMBL:AL627283) (588 aa) fasta scores: E(): 1.8e-98%2C 54.18 38d in 574 aa and Salmonella typhimurium fels-2 prophage: similar to gpP%2C ATP charging%2C in phage P2 Stm2722 SWALL:Q8ZMT0 (EMBL:AE008824) (588 aa) fasta scores: E(): 3.7e-98%2C 54 38d in 574 aa	gene	gene1664	http://www.ncbi.nlm.nih.gov/gene/?term=YE1678
YE1679	YE1679	gpQ	gpQ	1875147	1876187	+	portal vertex protein	Similar to Bacteriophage P2 presumed portal vertex protein Q SWALL:VPQ_BPP2 (SWALL:P25480) (344 aa) fasta scores: E(): 5e-70%2C 52.52 38d in 337 aa and Salmonella typhi probable capsid portal protein Sty4628 SWALL:Q8Z1E6 (EMBL:AL627283) (348 aa) fasta scores: E(): 7.6e-82%2C58.65 38d in 341 aa	gene	gene1665	http://www.ncbi.nlm.nih.gov/gene/?term=YE1679
YE1681	YE1681		YE1681	1876566	1877924	-	prophage encoded DNA modification methylase	Similar to many DNA methylases including: Desulfovibrio desulfuricans modification methylase DdeI or DdeM SWALL:MTD1_DESDN (SWALL:P05302) (415 aa) fasta scores: E(): 1.3e-13%2C 32.27 38d in 440 aa and Nostoc sp. ATCC 29411 modification methylase NspiM SWALL:Q9ZHP3 (EMBL:AF056036) (397 aa) fasta scores: E(): 3.9e-13%2C30.46 38d in 430 aa	gene	gene1666	http://www.ncbi.nlm.nih.gov/gene/?term=YE1681
YE1682	YE1682		YE1682	1878009	1878452	-	hypothetical protein	no significant database hits	gene	gene1667	http://www.ncbi.nlm.nih.gov/gene/?term=YE1682
YE1683	YE1683		YE1683	1878468	1879427	-	prophage encoded two-component system response regulator	Weakly similar to a proposed two-component system response regulator from Streptococcus agalactiae DltR SWALL:Q8VM69 (EMBL:AJ291784) (224 aa) fasta scores: E(): 0.068%2C 22.5 38d in 200 aa	gene	gene1668	http://www.ncbi.nlm.nih.gov/gene/?term=YE1683
YE1684	YE1684		YE1684	1879424	1881802	-	prophage encoded two-component system histidine kinase		gene	gene1669	http://www.ncbi.nlm.nih.gov/gene/?term=YE1684
YE1686	YE1686	gpA	gpA	1882132	1884420	-	phage replication protein	Similar to Bacteriophage P2 replication gene A protein A SWALL:VPA_BPP2 (SWALL:Q06419) (761 aa) fasta scores: E(): 7.4e-66%2C 34.53 38d in 779 aa and to Bacteriophage 186 replication gene A protein A or cp87 SWALL:VPA_BP186 (SWALL:P41064) (694 aa) fasta scores: E(): 2.8e-89%2C 43.82 38d in 696 aa	gene	gene1670	http://www.ncbi.nlm.nih.gov/gene/?term=YE1686
YE1687	YE1687		YE1687	1884420	1884644	-	hypothetical protein	Similar to Bacteriophage P2 hypothetical protein SWALL:YO82_BPP2 (SWALL:Q06424) (74 aa) fasta scores: E(): 3.5e-11%2C 48.64 38d in 74 aa and to Bacteriophage 186 hypothetical protein cp80 SWALL:CP80_BP186 (SWALL:P41059) (75 aa) fasta scores: E(): 1.8e-11%2C 50 38d in 74 aa. Also weakly similar to Escherichia coli plasmid R100 Zinc-finger protein TraR SWALL:O32533 (EMBL:AF005044) (73 aa) fasta scores: E(): 1.6e-05%2C 36.11 38d in 72 aa	gene	gene1671	http://www.ncbi.nlm.nih.gov/gene/?term=YE1687
YE1688	YE1688		YE1688	1884644	1884871	-	hypothetical protein	Similar to Bacteriophage P2 hypothetical protein orf80 SWALL:YO80_BPP2 (SWALL:Q06422) (74 aa) fasta scores: E(): 0.9%2C 35.08 38d in 57 aa%2C Salmonella typhimurium fels-2 prophage: similar to protein in phage 186 Stm2732 SWALL:Q8ZMS1 (EMBL:AE008824) (77 aa) fasta scores: E(): 0.002%2C 34.24 38d in 73 aa and Salmonella typhi hypothetical protein Sty4639 SWALL:Q8Z1D7 (EMBL:AL627283) (77 aa) fasta scores: E(): 0.0073%2C 32.87 38d in 73 aa	gene	gene1672	http://www.ncbi.nlm.nih.gov/gene/?term=YE1688
YE1689A	YE1689A		YE1689A	1885233	1885514	-	hypothetical protein		gene	gene1673	http://www.ncbi.nlm.nih.gov/gene/?term=YE1689A
YE1690	YE1690		YE1690	1885529	1885795	-	phage DNA-binding protein	no significant database hits	gene	gene1674	http://www.ncbi.nlm.nih.gov/gene/?term=YE1690
YE1691	YE1691	cI	cI	1885885	1886184	+	phage repressor protein	Similar to Bacteriophage P2 repressor protein C SWALL:RPC_BPP2 (SWALL:P04132) (99 aa) fasta scores: E(): 1.6e-11%2C 38.38 38d in 99 aa and to Bacteriophage WPhi repressor protein C SWALL:Q9T1J6 (EMBL:AJ245959) (97 aa) fasta scores: E(): 2.8e-16%2C 54.83 38d in 93 aa	gene	gene1675	http://www.ncbi.nlm.nih.gov/gene/?term=YE1691
YE1692	YE1692	int	int	1886248	1887231	+	P2-like phage integrase	Similar to Bacteriophage P2 Integrase Int SWALL:VINT_BPP2 (SWALL:P36932) (337 aa) fasta scores: E(): 4.3e-57%2C 46.27 38d in 322 aa and Bacteriophage 186 Integrase inT SWALL:VINT_BP186 (SWALL:P06723) (336 aa) fasta scores: E(): 1.4e-39%2C 46.86 38d in 335 aa	gene	gene1676	http://www.ncbi.nlm.nih.gov/gene/?term=YE1692
YE1693	YE1693		YE1693	1887316	1888287	+	hypothetical protein	no significant database hits	gene	gene1677	http://www.ncbi.nlm.nih.gov/gene/?term=YE1693
YE1694	YE1694	tnp	tnp	1888605	1889063	+	transposase for IS1541	Previously sequenced as Yersinia enterocolitica IS1541 element transposase Tnp SWALL:Q9X9G7 (EMBL:AJ238016) (152 aa) fasta scores: E(): 1.2e-66%2C 100 id in 152 aa. Also similar to many other IS200-like transposases e.g. Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence element IS200 SWALL:T200_SALTY (SWALL:Q57334) (152 aa) fasta scores: E(): 9.6e-64%2C 94.73 38d in 152 aa	gene	gene1678	http://www.ncbi.nlm.nih.gov/gene/?term=YE1694
YE1695	YE1695		YE1695	1889227	1890057	-	hypothetical protein	no significant database hits	gene	gene1679	http://www.ncbi.nlm.nih.gov/gene/?term=YE1695
YE1696	YE1696		YE1696	1890125	1891669	-	ABC transporter ATP-binding protein	Similar to several secretion proteins including: Escherichia coli probable microcin h47 secretion ATP-binding protein MchF SWALL:MCHF_ECOLI (SWALL:Q9EXN5) (698 aa) fasta scores: E(): 4.1e-62%2C 40.39 38d in 453 aa and to Pseudomonas aeruginosa probable toxin transporter Pa4143 SWALL:Q9HWN8 (EMBL:AE004831) (719 aa) fasta scores: E(): 1.2e-72%2C 47.27 38d in 459 aa	gene	gene1680	http://www.ncbi.nlm.nih.gov/gene/?term=YE1696
YE1697	YE1697		YE1697	1891740	1892450	-	hypothetical protein	Weakly similar to several proposed secretion apparatus proteins including: Pseudomonas aeruginosa probable secretion protein Pa4142 SWALL:Q9HWN9 (EMBL:AE004831) (418 aa) fasta scores: E(): 1.4e-06%2C21.86 38d in 215 aa and to Escherichia coli microcin h47 secretion protein MchE SWALL:MCHE_ECOLI (SWALL:Q9EXN6) (424 aa) fasta scores: E(): 0.00024%2C 19.24 38d in 213 aa	gene	gene1681	http://www.ncbi.nlm.nih.gov/gene/?term=YE1697
YE1698	YE1698		YE1698	1892594	1893847	-	hypothetical protein	Similar to many proteins of undefined function including: Streptomyces coelicolor hypothetical protein Sco5273 or 2sc7g11.35 SWALL:Q9F3J2 (EMBL:AL391763) (620 aa) fasta scores: E(): 2.6e-23%2C 25.33 38d in 375 aa and to Pasteurella multocida hypothetical protein Pm0600 SWALL:Q9CN44 (EMBL:AE006096) (377 aa) fasta scores: E(): 3.5e-18%2C 26.4 38d in 375 aa	gene	gene1682	http://www.ncbi.nlm.nih.gov/gene/?term=YE1698
YE1699	YE1699		YE1699	1894430	1896220	-	ABC transporter substrate-binding protein	Similar to Salmonella typhimurium putative dipeptide/oligopeptide/nickel ABC-type transport systems%2Cperiplasmic component stm3860 SWALL:Q8ZKX2 (EMBL:AE008880) (585 aa) fasta scores: E(): 2.2e-112%2C 61.17 38d in 595 aa%2Cand to Yersinia pestis hypothetical protein Ypo0524 ypo0524 SWALL:Q8ZIH3 (EMBL:AJ414143) (553 aa) fasta scores: E(): 1.3e-62%2C 41.34 38d in 595 aa	gene	gene1683	http://www.ncbi.nlm.nih.gov/gene/?term=YE1699
YE1700	YE1700		YE1700	1896368	1897189	+	shikimate 5-dehydrogenase	catalyzes the conversion of shikimate to 3-dehydroshikimate	gene	gene1684	http://www.ncbi.nlm.nih.gov/gene/?term=YE1700
YE1701	YE1701		YE1701	1897265	1897618	+	purine nucleoside phosphoramidase		gene	gene1685	http://www.ncbi.nlm.nih.gov/gene/?term=YE1701
YE1702	YE1702	ycfL	ycfL	1897655	1898044	+	lipoprotein		gene	gene1686	http://www.ncbi.nlm.nih.gov/gene/?term=YE1702
YE1703	YE1703		YE1703	1898186	1898680	+	lipoprotein		gene	gene1687	http://www.ncbi.nlm.nih.gov/gene/?term=YE1703
YE1704	YE1704		YE1704	1898661	1899581	+	hypothetical protein		gene	gene1688	http://www.ncbi.nlm.nih.gov/gene/?term=YE1704
YE1705	YE1705	ycfO	ycfO	1899737	1900762	+	beta-hexosaminidase	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides	gene	gene1689	http://www.ncbi.nlm.nih.gov/gene/?term=YE1705
YE1706	YE1706		YE1706	1900765	1901307	+	hypothetical protein		gene	gene1690	http://www.ncbi.nlm.nih.gov/gene/?term=YE1706
YE1707	YE1707	ndh	ndh	1901695	1902999	+	NADH dehydrogenase		gene	gene1691	http://www.ncbi.nlm.nih.gov/gene/?term=YE1707
YE1708	YE1708	ycfJ	ycfJ	1903698	1904237	+	hypothetical protein		gene	gene1692	http://www.ncbi.nlm.nih.gov/gene/?term=YE1708
YE1709	YE1709	mfd	mfd	1904376	1907822	-	transcription-repair coupling factor		gene	gene1693	http://www.ncbi.nlm.nih.gov/gene/?term=YE1709
YE1710	YE1710	lolC	lolC	1908143	1909345	+	outer membrane-specific lipoprotein transporter subunit LolC	part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane	gene	gene1694	http://www.ncbi.nlm.nih.gov/gene/?term=YE1710
YE1711	YE1711	lolD	lolD	1909338	1910042	+	lipoprotein transporter ATP-binding protein	outer membrane specific%3B part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins%2C from the inner membrane to the periplasmic chaperone	gene	gene1695	http://www.ncbi.nlm.nih.gov/gene/?term=YE1711
YE1712	YE1712	lolE	lolE	1910054	1911301	+	outer membrane-specific lipoprotein transporter subunit LolE	part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane	gene	gene1696	http://www.ncbi.nlm.nih.gov/gene/?term=YE1712
YE1713	YE1713		YE1713	1911367	1912278	+	N-acetyl-D-glucosamine kinase	catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine	gene	gene1697	http://www.ncbi.nlm.nih.gov/gene/?term=YE1713
YE1714	YE1714	cobB	cobB	1912439	1913275	+	NAD-dependent deacetylase	Modulates the activities of several enzymes which are inactive in their acetylated form	gene	gene1698	http://www.ncbi.nlm.nih.gov/gene/?term=YE1714
YE1715	YE1715	pepT	pepT	1913580	1914815	+	peptidase T	catalyzes the release of the N-terminal amino acid from a tripeptide	gene	gene1699	http://www.ncbi.nlm.nih.gov/gene/?term=YE1715
YE1716	YE1716		YE1716	1915015	1916136	-	hypothetical protein		gene	gene1700	http://www.ncbi.nlm.nih.gov/gene/?term=YE1716
YE1717	YE1717	phoQ	phoQ	1916221	1917675	-	sensor protein PhoQ		gene	gene1701	http://www.ncbi.nlm.nih.gov/gene/?term=YE1717
YE1718	YE1718	phoP	phoP	1917681	1918352	-	DNA-binding transcriptional regulator PhoP	response regulator in two-component regulatory system with PhoQ%3B involved in magnesium starvation and stress	gene	gene1702	http://www.ncbi.nlm.nih.gov/gene/?term=YE1718
YE1719	YE1719		YE1719	1918424	1919047	-	lipoprotein		gene	gene1703	http://www.ncbi.nlm.nih.gov/gene/?term=YE1719
YE1720	YE1720	purB	purB	1919235	1920605	-	adenylosuccinate lyase	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide	gene	gene1704	http://www.ncbi.nlm.nih.gov/gene/?term=YE1720
YE1721	YE1721		YE1721	1920631	1921257	-	hypothetical protein	HflD%3B UPF0274%3B in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein%3B in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis	gene	gene1705	http://www.ncbi.nlm.nih.gov/gene/?term=YE1721
YE1722	YE1722	mnmA	mnmA	1921382	1922503	-	tRNA-specific 2-thiouridylase MnmA	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs	gene	gene1706	http://www.ncbi.nlm.nih.gov/gene/?term=YE1722
YE1723	YE1723		YE1723	1922690	1923136	-	hypothetical protein		gene	gene1707	http://www.ncbi.nlm.nih.gov/gene/?term=YE1723
YE1724	YE1724	ymfC	ymfC	1923129	1923755	-	pseudouridine synthase		gene	gene1708	http://www.ncbi.nlm.nih.gov/gene/?term=YE1724
YE1725	YE1725	icd	icd	1923886	1925139	+	isocitrate dehydrogenase	Converts isocitrate to alpha ketoglutarate	gene	gene1709	http://www.ncbi.nlm.nih.gov/gene/?term=YE1725
YE1726	YE1726		YE1726	1925672	1926532	+	hypothetical protein	Weakly similar in parts to Haemophilus influenzae putative glycosyl transferase Hi1696 SWALL:YG96_HAEIN (SWALL:Q48214) (294 aa) fasta scores: E(): 0.046%2C 33.33 id in 87 aa	gene	gene1710	http://www.ncbi.nlm.nih.gov/gene/?term=YE1726
YE1727	YE1727		YE1727	1926684	1927904	+	inner membrane protein	Weakly similar to Pseudomonas putida O-antigen polymerase WzY SWALL:Q9KKE4 (EMBL:AF109736) (391 aa) fasta scores: E(): 0.007%2C 24.89 38d in 241 aa and to Salmonella typhi O-antigen ligase Waal or Sty4082 SWALL:Q8Z2F8 (EMBL:AL627280) (404 aa) fasta scores: E(): 0.17%2C 22.45 id in 383 aa	gene	gene1711	http://www.ncbi.nlm.nih.gov/gene/?term=YE1727
YE1728	YE1728		YE1728	1928346	1928871	+			gene	gene1712	http://www.ncbi.nlm.nih.gov/gene/?term=YE1728
YE1729	YE1729		YE1729	1928860	1929341	-			gene	gene1713	http://www.ncbi.nlm.nih.gov/gene/?term=YE1729
YE1730	YE1730		YE1730	1929451	1929711	-	hypothetical protein		gene	gene1714	http://www.ncbi.nlm.nih.gov/gene/?term=YE1730
YE1731	YE1731	aer	aer	1929885	1931444	-	methyl-accepting chemotaxis protein		gene	gene1715	http://www.ncbi.nlm.nih.gov/gene/?term=YE1731
YE1732	YE1732	umuC	umuC	1932015	1933283	-	UV protection and mutation protein	Similar to Escherichia coli uv protection and mutation protein UmuC or b1184 SWALL:UMUC_ECOLI (SWALL:P04152) (422 aa) fasta scores: E(): 7e-106%2C 64.02 id in 417 aa and to Salmonella typhimurium UmuC protein or stm1997 SWALL:UMUC_SALTY (SWALL:P22494) (422 aa) fasta scores: E(): 1.8e-106%2C 65.22 38d in 417 aa	gene	gene1716	http://www.ncbi.nlm.nih.gov/gene/?term=YE1732
YE1733	YE1733	umuD	umuD	1933283	1933696	-	UV protection and mutation protein	Similar to Escherichia coli%2C and Escherichia coli O157:H7 uv protection and mutation protein UmuD protein or b1183 or z1946 or ecs1678 SWALL:UMUD_ECOLI (SWALL:P04153) (139 aa) fasta scores: E(): 7e-17%2C 40.9 38d in 132 aa%2CEscherichia coli%2C and Providencia rettgeri RumA(r391) SWALL:Q44053 (EMBL:U13633) (149 aa) fasta scores: E(): 8.2e-18%2C 48.71 38d in 117 aa%2C and to Salmonella typhimurium protein UmuDor stm1998 SWALL:UMUD_SALTY (SWALL:P22493) (139 aa) fasta scores: E(): 1.4e-17%2C 50.38 id in 129 aa	gene	gene1717	http://www.ncbi.nlm.nih.gov/gene/?term=YE1733
YE1735	YE1735		YE1735	1934255	1934653	+	hypothetical protein	Similar to several including: Yersinia pestis hypothetical protein Ypo2009A SWALL:Q8ZEY6 (EMBL:AJ414151) (104 aa) fasta scores: E(): 7e-31%2C 87.5 38d in 104 aa%2C and in part to Salmonella typhimurium putative cytoplasmic protein Stm0948 SWALL:Q8ZQE1 (EMBL:AE008740) (133 aa) fasta scores: E(): 3.9e-16%2C 53 38d in 100 aa	gene	gene1718	http://www.ncbi.nlm.nih.gov/gene/?term=YE1735
YE1736	YE1736		YE1736	1934671	1935468	+	transposase for insertion element IS1669	Similar to Shigella sonnei insertion element IS600 hypothetical protein SWALL:YIS2_SHISO (SWALL:P16940) (272 aa) fasta scores: E(): 5.9e-25%2C 37.4 38d in 270 aa%2CPseudomonas aeruginosa hypothetical protein Pa0257 SWALL:Q9I6N2 (EMBL:AE004463) (263 aa) fasta scores: E(): 8.6e-70%2C 66.16 38d in 263 aa and to Porphyromonas gingivalis transposase Orf2 SWALL:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 9.8e-27%2C 37.26 38d in 271 aa	gene	gene1719	http://www.ncbi.nlm.nih.gov/gene/?term=YE1736
YE1737	YE1737		YE1737	1935748	1936007	+			gene	gene1720	http://www.ncbi.nlm.nih.gov/gene/?term=YE1737
YE1738	YE1738		YE1738	1936070	1936927	-	hypothetical protein		gene	gene1721	http://www.ncbi.nlm.nih.gov/gene/?term=YE1738
YE1739	YE1739		YE1739	1937261	1937602	+	hypothetical protein		gene	gene1722	http://www.ncbi.nlm.nih.gov/gene/?term=YE1739
YE1740	YE1740		YE1740	1937666	1937950	-	hypothetical protein		gene	gene1723	http://www.ncbi.nlm.nih.gov/gene/?term=YE1740
YE1742	YE1742		YE1742	1938628	1939542	-	inner membrane protein	Similar to many proteins of undefined function including: Pseudomonas aeruginosa hypothetical protein Pa3897 SWALL:Q9HXB6 (EMBL:AE004807) (300 aa) fasta scores: E(): 4.2e-52%2C 50.86 38d in 289 aa and Bacillus subtilis hypothetical transport protein YoaV SWALL:YOAV_BACSU (SWALL:O34416) (292 aa) fasta scores: E(): 7.5e-10%2C 23.42 id in 286 aa	gene	gene1724	http://www.ncbi.nlm.nih.gov/gene/?term=YE1742
YE1743	YE1743		YE1743	1939494	1940600	+	AraC family transcriptional regulator	Similar to many proposed regulatory proteins including: Pantoea citrea regulatory protein GdhbR SWALL:Q9Z676 (EMBL:AF102513) (288 aa) fasta scores: E(): 1.5e-71%2C 59.44 38d in 286 aa%2C Pseudomonas aeruginosa probable transcriptional regulator Pa3898 SWALL:Q9HXB5 (EMBL:AE004807) (293 aa) fasta scores: E(): 6.3e-40%2C42.75 38d in 290 aa and Burkholderia pseudomallei probable transcriptional regulator SWALL:Q93SM6 (EMBL:AY032866) (362 aa) fasta scores: E(): 2.6e-32%2C 34.52 38d in 281 aa. Note it is possible that the true translational start site for the CDS lies at codon 73.	gene	gene1725	http://www.ncbi.nlm.nih.gov/gene/?term=YE1743
YE1744	YE1744		YE1744	1940624	1941013	-	hypothetical protein	Similar to many including: Salmonella typhimurium putative periplasmic protein Stm1123 SWALL:Q8ZQ37 (EMBL:AE008748) (131 aa) fasta scores: E(): 1.2e-23%2C53.96 38d in 126 aa%2C Salmonella typhi putative secreted protein Sty1158 SWALL:Q8Z7N6 (EMBL:AL627269) (131 aa) fasta scores: E(): 2.2e-23%2C 53.17 38d in 126 aa and Rhizobium meliloti hypothetical protein R02472 or smc02046 SWALL:YO72_RHIME (SWALL:P42879) (139 aa) fasta scores: E(): 1.3e-05%2C 39.82 38d in 113 aa	gene	gene1726	http://www.ncbi.nlm.nih.gov/gene/?term=YE1744
YE1745	YE1745	hdeB	hdeB	1941092	1941403	-	acid-resistance protein	Similar to Yersinia pestis putative exported protein Ypo2674 SWALL:Q8ZDB4 (EMBL:AJ414153) (109 aa) fasta scores: E(): 6.8e-23%2C 59.43 38d in 106 aa and to Escherichia coli protein HdeB precursor or b3509 SWALL:HDEB_ECOLI (SWALL:P26605) (108 aa) fasta scores: E(): 2e-13%2C 49.41 38d in 85 aa	gene	gene1727	http://www.ncbi.nlm.nih.gov/gene/?term=YE1745
YE1746	YE1746		YE1746	1942268	1943590	+	hypothetical protein	Similar in the C-terminus only to the regions within proteins thought to constitute part of a sensor transduction system%2C including: Synechocystis sp. regulatory components of sensory transduction system sll1673 SWALL:P72790 (EMBL:D90900) (452 aa) fasta scores: E(): 3.5e-22%2C 38.11 38d in 265 aa%2C and to Vibrio cholerae sensory box/ggdef family protein vc2370 SWALL:Q9KPJ7 (EMBL:AE004307) (579 aa) fasta scores: E(): 2.6e-20%2C28.85 38d in 357 aa	gene	gene1728	http://www.ncbi.nlm.nih.gov/gene/?term=YE1746
YE1747	YE1747		YE1747	1943804	1944652	-	hypothetical protein		gene	gene1729	http://www.ncbi.nlm.nih.gov/gene/?term=YE1747
YE1748	YE1748		YE1748	1944755	1946473	-	ABC transporter ATP-binding protein		gene	gene1730	http://www.ncbi.nlm.nih.gov/gene/?term=YE1748
YE1749	YE1749		YE1749	1946673	1947092	+	acetyltransferase	Similar to many including: Pantoea agglomerans hypothetical protein SWALL:Q937I1 (EMBL:X99768) (149 aa) fasta scores: E(): 1.1e-20%2C 47.4 38d in 135 aa%2C Salmonella typhimurium putative acetyltransferase Stm1857 SWALL:Q8ZNY6 (EMBL:AE008782) (139 aa) fasta scores: E(): 3.5e-17%2C 42.64 38d in 136 aa and Salmonella typhi putative acetyltransferase Sty1991 SWALL:Q8Z655 (EMBL:AL627272) (139 aa) fasta scores: E(): 9.4e-16%2C 41.17 38d in 136 aa	gene	gene1731	http://www.ncbi.nlm.nih.gov/gene/?term=YE1749
YE1750	YE1750		YE1750	1947359	1948861	+	amino acid permease	Similar to many arginine/ornithine antiporters including: Clostridium perfringens ArcD or cpe0170 SWALL:ARCD_CLOPE (SWALL:Q46170) (478 aa) fasta scores: E(): 8.2e-41%2C 45.23 38d in 504 aa and Rhizobium meliloti probable arginine/ornithine antiporter ArcD1 or ra0913 or sma1667 SWALL:Q92YG7 (EMBL:AE007277) (475 aa) fasta scores: E(): 7.8e-59%2C 59.35 38d in 497 aa	gene	gene1732	http://www.ncbi.nlm.nih.gov/gene/?term=YE1750
YE1752	YE1752		YE1752	1949296	1949460	+	hypothetical protein		gene	gene1733	http://www.ncbi.nlm.nih.gov/gene/?term=YE1752
YE1753	YE1753		YE1753	1949519	1949905	-	AraC family transcription regulator		gene	gene1734	http://www.ncbi.nlm.nih.gov/gene/?term=YE1753
YE1756	YE1756		YE1756	1950571	1950810	+	hypothetical protein		gene	gene1735	http://www.ncbi.nlm.nih.gov/gene/?term=YE1756
YE1757	YE1757		YE1757	1950903	1951115	-	hypothetical protein		gene	gene1736	http://www.ncbi.nlm.nih.gov/gene/?term=YE1757
YE1758	YE1758		YE1758	1951825	1952100	+	hypothetical protein		gene	gene1737	http://www.ncbi.nlm.nih.gov/gene/?term=YE1758
YE1759	YE1759		YE1759	1952302	1952601	+	hypothetical protein		gene	gene1738	http://www.ncbi.nlm.nih.gov/gene/?term=YE1759
YE1760	YE1760		YE1760	1952684	1952953	+	hypothetical protein		gene	gene1739	http://www.ncbi.nlm.nih.gov/gene/?term=YE1760
YE1761	YE1761	aroP	aroP	1953145	1954536	+	aromatic amino acid transport protein		gene	gene1740	http://www.ncbi.nlm.nih.gov/gene/?term=YE1761
YE1762	YE1762	pagP	pagP	1954778	1955392	-	palmitoyl transferase	catalyzes the transfer of palmitate to lipid A	gene	gene1741	http://www.ncbi.nlm.nih.gov/gene/?term=YE1762
YE1765	YE1765	cspC1	cspC1	1956541	1956750	+	cold shock-like protein CspC	Similar to Escherichia coli%2C Escherichia coli O157:H7%2C Salmonella typhimurium%2C and Salmonella typhi cold shock-like protein CspC cspC or msmB or b1823 or z2868 or ecs2533 or stm1837 or sty1967 SWALL:CSPC_ECOLI (SWALL:P36996) (68 aa) fasta scores: E(): 3.8e-26%2C 98.52 id in 68 aa%2C and to Yersinia pestis cold shock protein ypo1746 SWALL:Q8ZFG3 (EMBL:AJ414150) (69 aa) fasta scores: E(): 6.1e-27%2C 100 38d in 69 aa	gene	gene1742	http://www.ncbi.nlm.nih.gov/gene/?term=YE1765
YE1766	YE1766		YE1766	1956828	1957547	-	hypothetical protein		gene	gene1743	http://www.ncbi.nlm.nih.gov/gene/?term=YE1766
YE1767	YE1767	ftsI2	ftsI2	1957750	1959459	+	peptidoglycan synthetase	Similar to many peptidoglycan synthetases including: Escherichia coli%2C and Escherichia coli O157:H7 peptidoglycan synthetase precursor FtsI or pbpb or b0084 or z0094 or ecs0088 SWALL:FTSI_ECOLI (SWALL:P04286) (588 aa) fasta scores: E(): 4e-164%2C 71.96 38d in 560 aa and Salmonella typhimurium%2C and Salmonella typhi putative penicillin-binding protein-3 Stm1836 or FtsI2 or Sty1965 SWALL:Q8XF62 (EMBL:AE008781) (581 aa) fasta scores: E(): 1.1e-157%2C 69.14 38d in 564 aa. The product of this CDS is also highly similar to YE0666 69.052 38dentity in 559 aa	gene	gene1744	http://www.ncbi.nlm.nih.gov/gene/?term=YE1767
YE1768	YE1768	rrmA	rrmA	1959577	1960437	+	23S rRNA methyltransferase A	methylates the guanosine in position 745 of 23S rRNA%3B required for translation and cell growth	gene	gene1745	http://www.ncbi.nlm.nih.gov/gene/?term=YE1768
YE1769	YE1769		YE1769	1960600	1960878	-	hypothetical protein		gene	gene1746	http://www.ncbi.nlm.nih.gov/gene/?term=YE1769
YE1770	YE1770		YE1770	1961046	1963121	-	hypothetical protein		gene	gene1747	http://www.ncbi.nlm.nih.gov/gene/?term=YE1770
YE1771	YE1771	fcuA	fcuA	1963919	1965973	+	ferrichrome receptor protein		gene	gene1748	http://www.ncbi.nlm.nih.gov/gene/?term=YE1771
YE1772	YE1772	yebN	yebN	1966103	1966672	-	hypothetical protein		gene	gene1749	http://www.ncbi.nlm.nih.gov/gene/?term=YE1772
YE1773	YE1773	yobD	yobD	1967113	1967574	-	hypothetical protein		gene	gene1751	http://www.ncbi.nlm.nih.gov/gene/?term=YE1773
YE1775	YE1775	gptB	gptB	1967791	1968654	-	PTS system mannose-specific transporter subunit IID	hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IID with IIC forms the translocation channel	gene	gene1752	http://www.ncbi.nlm.nih.gov/gene/?term=YE1775
YE1776	YE1776	manY	manY	1968688	1969485	-	PTS system mannose-specific transporter subunit IIC		gene	gene1753	http://www.ncbi.nlm.nih.gov/gene/?term=YE1776
YE1777	YE1777	gptB	gptB	1969703	1970668	-	PTS system mannose-specific transporter subunit IIAB		gene	gene1754	http://www.ncbi.nlm.nih.gov/gene/?term=YE1777
YE1778	YE1778	yoaE	yoaE	1971438	1972982	+	hypothetical protein		gene	gene1755	http://www.ncbi.nlm.nih.gov/gene/?term=YE1778
YE1779	YE1779	sdaA	sdaA	1973872	1975236	-	L-serine dehydratase		gene	gene1756	http://www.ncbi.nlm.nih.gov/gene/?term=YE1779
YE1780	YE1780		YE1780	1975689	1976276	-	hypothetical protein	Similar to Yersinia pestis MutT-family protein Ypo1772 SWALL:Q8ZFE2 (EMBL:AJ414150) (199 aa) fasta scores: E(): 7.4e-58%2C 78.35 38d in 194 aa%2C and to Escherichia coli hypothetical protein YeaB yeab or b1813 SWALL:YEAB_ECOLI (SWALL:P43337) (192 aa) fasta scores: E(): 4e-42%2C 60.32 38d in 184 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi hypothetical protein YeaB or stm1825 or sty1955 SWALL:YEAB_SALTY (SWALL:P43339) (192 aa) fasta scores: E(): 1.3e-41%2C 58.69 38d in 184 aa	gene	gene1757	http://www.ncbi.nlm.nih.gov/gene/?term=YE1780
YE1781	YE1781	pabB	pabB	1976289	1977659	-	para-aminobenzoate synthase component I		gene	gene1758	http://www.ncbi.nlm.nih.gov/gene/?term=YE1781
YE1782	YE1782		YE1782	1977842	1978099	+	hypothetical protein		gene	gene1759	http://www.ncbi.nlm.nih.gov/gene/?term=YE1782
YE1784	YE1784	purT	purT	1978355	1979536	-	phosphoribosylglycinamide formyltransferase 2	non-folate utilizing enzyme%2C catalyzes the production of beta-formyl glycinamide ribonucleotide from formate%2C ATP%2C and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP%3B involved in de novo purine biosynthesis	gene	gene1760	http://www.ncbi.nlm.nih.gov/gene/?term=YE1784
YE1785	YE1785	dbpA	dbpA	1979790	1981172	+	ATP-dependent RNA helicase DbpA	exhibits an RNA-dependent ATPase activity%2C specifically stimulated by bacterial 23S rRNA	gene	gene1761	http://www.ncbi.nlm.nih.gov/gene/?term=YE1785
YE1786	YE1786		YE1786	1981268	1981588	+	hypothetical protein		gene	gene1762	http://www.ncbi.nlm.nih.gov/gene/?term=YE1786
YE1787	YE1787		YE1787	1981628	1981936	+	hypothetical protein		gene	gene1763	http://www.ncbi.nlm.nih.gov/gene/?term=YE1787
YE1788	YE1788		YE1788	1982039	1982398	+	hypothetical protein	secreted protein%3B unknown function	gene	gene1764	http://www.ncbi.nlm.nih.gov/gene/?term=YE1788
YE1789	YE1789	ptrB	ptrB	1982588	1984642	+	oligopeptidase B		gene	gene1765	http://www.ncbi.nlm.nih.gov/gene/?term=YE1789
YE1790	YE1790	exoX	exoX	1984654	1985316	-	exodeoxyribonuclease X	3'-5' exonuclease activity on single or double-strand DNA	gene	gene1766	http://www.ncbi.nlm.nih.gov/gene/?term=YE1790
YE1791	YE1791		YE1791	1985629	1986633	-	transposase for insertion sequence element IS1328	Previously sequenced as Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 1.7e-131%2C 98.8 38d in 334 aa. Also similar to Shigella flexneri 2A IS1328 transposase SWALL:Q93EZ2 (EMBL:AF326777) (334 aa) fasta scores: E(): 8e-98%2C 73.78 id in 328 aa	gene	gene1767	http://www.ncbi.nlm.nih.gov/gene/?term=YE1791
YE1793	YE1793	pip	pip	1987170	1988126	+	proline iminopeptidase		gene	gene1768	http://www.ncbi.nlm.nih.gov/gene/?term=YE1793
YE1794	YE1794	holE	holE	1988176	1988409	-	DNA polymerase III subunit theta		gene	gene1769	http://www.ncbi.nlm.nih.gov/gene/?term=YE1794
YE1795	YE1795	ftn	ftn	1988793	1989302	+	ferritin		gene	gene1770	http://www.ncbi.nlm.nih.gov/gene/?term=YE1795
YE1796	YE1796		YE1796	1989693	1990079	+	copper resistance protein		gene	gene1771	http://www.ncbi.nlm.nih.gov/gene/?term=YE1796
YE1797	YE1797		YE1797	1990081	1990965	+	copper resistance protein D		gene	gene1772	http://www.ncbi.nlm.nih.gov/gene/?term=YE1797
YE1798	YE1798	yebY	yebY	1991047	1991403	+	hypothetical protein		gene	gene1773	http://www.ncbi.nlm.nih.gov/gene/?term=YE1798
YE1799	YE1799	int	int	1991800	1992855	-	phage integrase	Similar to many bacteriophage integrases including: Bacteriophage HK022 Int SWALL:VINT_BPHK0 (SWALL:P16407) (357 aa) fasta scores: E(): 3.5e-29%2C 38.08 38d in 323 aa%2CSalmonella typhi putative integrase Sty2077 SWALL:Q8Z5Y3 (EMBL:AL627272) (358 aa) fasta scores: E(): 6.9e-50%2C46.22 38d in 318 aa and to Bacteriophage lambda Integrase Int SWALL:VINT_LAMBD (SWALL:P03700) (356 aa) fasta scores: E(): 4.5e-28%2C 37.15 38d in 323 aa	gene	gene1776	http://www.ncbi.nlm.nih.gov/gene/?term=YE1799
YE1800	YE1800	xis	xis	1992830	1993099	-	excisionase	Similar to many bacteriophage excisionases including: lambda excisionase Xis SWALL:VXIS_LAMBD (SWALL:P03699) (72 aa) fasta scores: E(): 0.047%2C 30.95 38d in 84 aa and Salmonella typhi putative excisionase Sty2076 SWALL:Q8Z5Y4 (EMBL:AL627272) (93 aa) fasta scores: E(): 2.4e-09%2C 45.78 38d in 83 aa	gene	gene1777	http://www.ncbi.nlm.nih.gov/gene/?term=YE1800
YE1801	YE1801		YE1801	1993206	1993514	-	phage-like protein	no significant database hits	gene	gene1778	http://www.ncbi.nlm.nih.gov/gene/?term=YE1801
YE1802	YE1802		YE1802	1993532	1993870	-	hypothetical protein	no significant database hits	gene	gene1779	http://www.ncbi.nlm.nih.gov/gene/?term=YE1802
YE1803	YE1803	tnpB	tnpB	1993951	1994700	-	transposase B	Previously sequenced as Yersinia enterocolitica transposase B TnpB SWALL:Q9RIG3 (EMBL:AJ251581) (249 aa) fasta scores: E(): 1.2e-104%2C 100 38d in 249 aa. Also similar to Xanthomonas axonopodis pv. citri str. 306 ISxac3 transposase Xac3248 SWALL:AAM38092 (EMBL:AE011970) (272 aa) fasta scores: E(): 3.2e-37%2C 44.13 38d in 247 aa	gene	gene1780	http://www.ncbi.nlm.nih.gov/gene/?term=YE1803
YE1803A	YE1803A	1803A	1803A	1994790	1994930	-			gene	gene1781	http://www.ncbi.nlm.nih.gov/gene/?term=YE1803A
YE1804	YE1804		YE1804	1994930	1995937	+			gene	gene1782	http://www.ncbi.nlm.nih.gov/gene/?term=YE1804
YE1805	YE1805		YE1805	1995934	1996935	+	phage portal vertex protein	Similar to many bacteriophage portal proteins including: Bacteriophage P2 presumed portal vertex protein Q SWALL:VPQ_BPP2 (SWALL:P25480) (344 aa) fasta scores: E(): 1.2e-88%2C 65.95 38d in 329 aa%2C Bacteriophage 186 capsid portal protein W SWALL:Q37851 (EMBL:U32222) (340 aa) fasta scores: E(): 5.4e-93%2C 67.79 38d in 326 aa and Salmonella typhimurium fels-2 prophage: similar to gpQ%2Cportal vector protein or stm2723 SWALL:Q8ZMS9 (EMBL:AE008824) (346 aa) fasta scores: E(): 1.5e-91%2C70.35 38d in 307 aa	gene	gene1783	http://www.ncbi.nlm.nih.gov/gene/?term=YE1805
YE1806	YE1806		YE1806	1996992	1997513	-	hypothetical protein	no significant database hits	gene	gene1784	http://www.ncbi.nlm.nih.gov/gene/?term=YE1806
YE1808	YE1808	yenI	yenI	1998216	2000696	-	methyltransferase-endonuclease	Previously sequenced as: Yersinia enterocolitica methyltransferase-endonuclease YenI SWALL:Q8VLS0 (EMBL:AJ414030) (826 aa) fasta scores: E(): 0%2C 100 38d in 826 aa. Also highly similar to Bacillus subtilis type II restriction enzyme BsuBI or hsrB SWALL:T2BB_BACSU (SWALL:P33562) (316 aa) fasta scores: E(): 2e-72%2C 55.41 id in 305 aa	gene	gene1785	http://www.ncbi.nlm.nih.gov/gene/?term=YE1808
YE1809	YE1809		YE1809	2000971	2001138	-	hypothetical protein	Weakly similar in parts to Ralstonia solanacearum hypothetical protein Rsc1697 or rs04093 SWALL:Q8XYR1 (EMBL:AL646065) (112 aa) fasta scores: E(): 3.3e-05%2C45.09 38d in 51 aa	gene	gene1786	http://www.ncbi.nlm.nih.gov/gene/?term=YE1809
YE1810	YE1810		YE1810	2001434	2001697	+	insertion element protein	Previously sequenced as Yersinia enterocolitica%2Cand Pantoea agglomerans transposase SWALL:Q46611 (EMBL:AJ414030) (87 aa) fasta scores: E(): 1.8e-30%2C 100 id in 87 aa. Highly similar to many other insertion element proteins including: Pantoea agglomerans pv. gypsophilae orfA SWALL:Q9AMM2 (EMBL:AF324174) (87 aa) fasta scores: E(): 5.5e-29%2C 95.4 38d in 87 aa and Burkholderia cepacia insertion element IS407 hypothetical 10.0 kDa protein SWALL:YI74_BURCE (SWALL:P24580) (87 aa) fasta scores: E(): 1.9e-20%2C 70.93 38d in 86 aa	gene	gene1787	http://www.ncbi.nlm.nih.gov/gene/?term=YE1810
YE1811	YE1811		YE1811	2001724	2002473	+	transposase for insertion element IS1222	Previously sequenced as Yersinia enterocolitica IS1222-like transposase SWALL:Q9X9I1 (EMBL:AJ132945) (165 aa) fasta scores: E(): 1e-68%2C 100 38d in 165 aa. Also similar to many transposases including: Ralstonia solanacearum ISrso14-transposase B protein SWALL:Q8XF72 (EMBL:AL646083) (275 aa) fasta scores: E(): 3.8e-49%2C59.21 38d in 255 aa and to Burkholderia cepacia insertion element IS407 hypothetical 20.5 kDa protein SWALL:YI71_BURCE (SWALL:P24577) (183 aa) fasta scores: E(): 2.2e-47%2C 69.04 38d in 168 aa	gene	gene1789	http://www.ncbi.nlm.nih.gov/gene/?term=YE1811
YE1813	YE1813		YE1813	2003309	2003704	+	exported phage-related protein	Similar to several bacteriophage proteins including: Ralstonia solanacearum probable phage-related transmembrane protein Rsc1933 or rs03502 SWALL:Q8XY30 (EMBL:AL646067) (134 aa) fasta scores: E(): 0.076%2C 33.07 id in 127 aa%2C Bacteriophage P27 hypothetical protein SWALL:Q9MBZ5 (EMBL:AJ249351) (130 aa) fasta scores: E(): 4.7%2C 31.57 38d in 114 aa and to Bacteriophage P27 putative holin SWALL:Q8W636 (EMBL:AJ298298) (144 aa) fasta scores: E(): 5.1%2C 31.57 38d in 114 aa	gene	gene1792	http://www.ncbi.nlm.nih.gov/gene/?term=YE1813
YE1814	YE1814		YE1814	2003704	2004000	+	hypothetical protein	Similar to Bacteriophage P27 hypothetical protein SWALL:Q9MBZ4 (EMBL:AJ249351) (91 aa) fasta scores: E(): 0.019%2C 29.87 38d in 77 aa and to Salmonella typhi putative prophage membrane protein Sty1041 SWALL:Q8Z7W3 (EMBL:AL627268) (93 aa) fasta scores: E(): 3.9e-05%2C 33.76 id in 77 aa	gene	gene1793	http://www.ncbi.nlm.nih.gov/gene/?term=YE1814
YE1815	YE1815		YE1815	2003987	2004529	+	hypothetical protein	Similar to many including: bacteriophage phi-8 bacteriophage phi-8 segment S SWALL:Q9MC03 (EMBL:AF226853) (169 aa) fasta scores: E(): 1.1%2C 29.41 38d in 136 aa%2CSalmonella typhi hypothetical protein Sty1889 SWALL:Q8Z6A5 (EMBL:AL627271) (180 aa) fasta scores: E(): 4.1e-51%2C69.66 38d in 178 aa and Salmonella typhimurium hypothetical protein Stm0016 SWALL:Q8ZS11 (EMBL:AE008693) (177 aa) fasta scores: E(): 1.7e-40%2C 60.34 38d in 174 aa	gene	gene1794	http://www.ncbi.nlm.nih.gov/gene/?term=YE1815
YE1816	YE1816		YE1816	2004575	2005024	+	phage endopeptidase	Similar to many bacteriophage endopeptidases including: Bacteriophage lambda endopeptidase rZ SWALL:ENPP_LAMBD (SWALL:P00726) (153 aa) fasta scores: E(): 9.5e-17%2C 43.13 38d in 153 aa%2C Bacteriophage 933W endopeptidase RZ SWALL:Q9XJJ6 (EMBL:AF125520) (154 aa) fasta scores: E(): 1e-19%2C 49.02 38d in 153 aa and Bacteriophage VT2-Sa SWALL:Q9T1L2 (EMBL:AP000363) (155 aa) fasta scores: E(): 2.1e-19%2C 48.7 38d in 154 aa	gene	gene1795	http://www.ncbi.nlm.nih.gov/gene/?term=YE1816
YE1818	YE1818		YE1818	2005427	2006431	+	transposase for insertion sequence element IS1328	Previously sequenced as Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 3.1e-129%2C 97.3 38d in 334 aa. Also similar to Shigella flexneri 2A IS1328 transposase SWALL:Q93EZ2 (EMBL:AF326777) (334 aa) fasta scores: E(): 8.9e-98%2C74.08 38d in 328 aa	gene	gene1796	http://www.ncbi.nlm.nih.gov/gene/?term=YE1818
YE1819	YE1819		YE1819	2006793	2007209	+	phage-like protein	Weakly similar in parts to Bacteriophage SfV hypothetical protein orf44 SWALL:AAL89446 (EMBL:U82619) (269 aa) fasta scores: E(): 5.9e-09%2C 39.39 38d in 99 aa and Bacteriophage HK620 hypothetical protein HkbK SWALL:Q9AZ05 (EMBL:AF335538) (165 aa) fasta scores: E(): 0.00044%2C 32.69 38d in 104 aa	gene	gene1797	http://www.ncbi.nlm.nih.gov/gene/?term=YE1819
YE1820	YE1820	ail	ail	2007722	2008258	+	attachment invasion locus protein		gene	gene1798	http://www.ncbi.nlm.nih.gov/gene/?term=YE1820
YE1821	YE1821		YE1821	2008303	2008593	-			gene	gene1799	http://www.ncbi.nlm.nih.gov/gene/?term=YE1821
YE1822	YE1822	trp1400A	trp1400A	2008650	2008937	+	IS1400 transposase A	Previously sequenced as Yersinia enterocolitica IS1400 transposase A Trp1400A SWALL:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 5e-31%2C 95.78 38d in 95 aa. Also similar to many others e.g. Yersinia pestis IS1400 transposase a Trp1400a or Ypo2640 SWALL:Q8ZDD3 (EMBL:AJ414153) (87 aa) fasta scores: E(): 7.9e-22%2C 76.13 id in 88 aa	gene	gene1800	http://www.ncbi.nlm.nih.gov/gene/?term=YE1822
YE1823	YE1823	trp1400B	trp1400B	2008921	2009706	+	transposase		gene	gene1801	http://www.ncbi.nlm.nih.gov/gene/?term=YE1823
YE1824	YE1824		YE1824	2009678	2010661	+			gene	gene1802	http://www.ncbi.nlm.nih.gov/gene/?term=YE1824
YE1825	YE1825		YE1825	2010666	2011838	+	DNA-binding protein	no significant database hits	gene	gene1803	http://www.ncbi.nlm.nih.gov/gene/?term=YE1825
YE1826	YE1826	tnpB	tnpB	2011853	2012602	-	transposase B	Previously sequenced as Yersinia enterocolitica transposase B TnpB SWALL:Q9RIG3 (EMBL:AJ251581) (249 aa) fasta scores: E(): 2.3e-104%2C 99.59 38d in 249 aa. Also similar to Xanthomonas axonopodis pv. citri str. 306 ISxac3 transposase Xac3248 SWALL:AAM38092 (EMBL:AE011970) (272 aa) fasta scores: E(): 8e-37%2C 43.72 38d in 247 aa	gene	gene1804	http://www.ncbi.nlm.nih.gov/gene/?term=YE1826
YE1827	YE1827	tnpA	tnpA	2012692	2013024	-	IS1329 transposase A	Previously sequenced as Yersinia enterocolitica IS1329 transposase A Trp1329A SWALL:Q9X9I2 (EMBL:AJ132945) (110 aa) fasta scores: E(): 1.8e-38%2C 100 38d in 110 aa. Also similar to Shigella dysenteriae transposase InsN for insertion sequence element IS911 SWALL:INSN_SHIDY (SWALL:P39213) (112 aa) fasta scores: E(): 7.6e-13%2C 42.45 id in 106 aa	gene	gene1805	http://www.ncbi.nlm.nih.gov/gene/?term=YE1827
YE1829	YE1829	pgsA	pgsA	2013890	2014438	-	phosphatidylglycerophosphate synthetase		gene	gene1809	http://www.ncbi.nlm.nih.gov/gene/?term=YE1829
YE1830	YE1830	uvrC	uvrC	2014497	2016329	-	excinuclease ABC subunit C	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision	gene	gene1810	http://www.ncbi.nlm.nih.gov/gene/?term=YE1830
YE1831	YE1831	uvrY	uvrY	2016322	2016978	-	response regulator	in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system%3B in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system	gene	gene1811	http://www.ncbi.nlm.nih.gov/gene/?term=YE1831
YE1832	YE1832		YE1832	2017670	2017894	+	hypothetical protein		gene	gene1812	http://www.ncbi.nlm.nih.gov/gene/?term=YE1832
YE1833	YE1833	glpM	glpM	2018006	2018344	+	hypothetical protein		gene	gene1813	http://www.ncbi.nlm.nih.gov/gene/?term=YE1833
YE1834	YE1834		YE1834	2018375	2018629	-	hypothetical protein		gene	gene1814	http://www.ncbi.nlm.nih.gov/gene/?term=YE1834
YE1835	YE1835		YE1835	2019471	2019890	-	DNA-binding protein	Similar to Escherichia coli O157:H7 similar to the regulatory protein DicA encoded by prophage CP-933O z2045 or ecs1765 SWALL:Q8XCA0 (EMBL:AE005343) (135 aa) fasta scores: E(): 5.6e-07%2C 31.96 38d in 122 aa and to Salmonella typhi putative DNA-binding protein Sty1020 SWALL:Q8Z7Y0 (EMBL:AL627268) (134 aa) fasta scores: E(): 7.5e-07%2C 28.8 38d in 125 aa	gene	gene1815	http://www.ncbi.nlm.nih.gov/gene/?term=YE1835
YE1836	YE1836		YE1836	2020221	2020403	+	phage-like protein	Similar to Bacteriophage P27 hypothetical 7.7 kDa protein SWALL:Q8W652 (EMBL:AJ298298) (67 aa) fasta scores: E(): 0.002%2C 45.23 38d in 42 aa	gene	gene1816	http://www.ncbi.nlm.nih.gov/gene/?term=YE1836
YE1837	YE1837		YE1837	2020829	2021248	+	phage antitermination protein	Similar to many bacteriophage antitermination proteins including: Bacteriophage APSE-1 probable antitermination protein Q 5 SWALL:REGQ_BPAPS (SWALL:Q9T1U3) (148 aa) fasta scores: E(): 6.4e-26%2C 56.8 id in 125 aa and to Yersinia pestis probable phage antitermination protein Q Ypo1234 SWALL:Q8ZGQ3 (EMBL:AJ414147) (159 aa) fasta scores: E(): 1.4e-36%2C68.46 38d in 130 aa	gene	gene1817	http://www.ncbi.nlm.nih.gov/gene/?term=YE1837
YE1838	YE1838		YE1838	2021426	2021602	-	hypothetical protein	Similar to several proteins of undefined function including: Escherichia coli hypothetical protein YdcX or b1445 SWALL:YDCX_ECOLI (SWALL:P76109) (82 aa) fasta scores: E(): 0.00022%2C 44.23 38d in 52 aa and Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YjdO or b4128.1 or z5731 or ecs5110.1 SWALL:YJDO_ECOLI (SWALL:P58038) (57 aa) fasta scores: E(): 1.7e-06%2C 51.92 id in 52 aa	gene	gene1818	http://www.ncbi.nlm.nih.gov/gene/?term=YE1838
YE1839	YE1839		YE1839	2021829	2022005	+	hypothetical protein	Similar to Bacteriophage PS34 gp13 SWALL:O80287 (EMBL:AJ011580) (67 aa) fasta scores: E(): 3.5e-11%2C 56.36 id in 55 aa and to Bacteriophage PS119 gp13 13 SWALL:O80291 (EMBL:AJ011581) (67 aa) fasta scores: E(): 3.5e-11%2C 56.36 38d in 55 aa	gene	gene1819	http://www.ncbi.nlm.nih.gov/gene/?term=YE1839
YE1840	YE1840		YE1840	2022007	2022489	+	bacteriophage lysozyme	Similar to many bacteriophage lysozymes including: Bacteriophage Mu lysozyme lys or 22 SWALL:LYCV_BPMU (SWALL:Q9T1X2) (171 aa) fasta scores: E(): 1e-23%2C 49.66 id in 149 aa%2C Bacteriophage PS119 lysozyme 19 SWALL:LYCV_BPPS1 (SWALL:O80292) (167 aa) fasta scores: E(): 3.1e-35%2C 57.14 38d in 161 aa and Bacteriophage PS34 lysozyme 19 SWALL:LYCV_BPPS3 (SWALL:O80288) (167 aa) fasta scores: E(): 5e-34%2C 55.9 38d in 161 aa	gene	gene1820	http://www.ncbi.nlm.nih.gov/gene/?term=YE1840
YE1842	YE1842		YE1842	2022862	2023746	+	lipase	Similar to many including: Pseudomonas fragi lipase precursor SWALL:LIP_PSEFR (SWALL:P08658) (277 aa) fasta scores: E(): 5.4e-54%2C 54.27 38d in 269 aa and Proteus vulgaris alkaline lipase SWALL:Q52614 (EMBL:U33845) (290 aa) fasta scores: E(): 3.9e-59%2C 58.7 38d in 293 aa	gene	gene1821	http://www.ncbi.nlm.nih.gov/gene/?term=YE1842
YE1843	YE1843		YE1843	2024540	2025412	+	23S rRNA pseudouridine synthase F	catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA	gene	gene1822	http://www.ncbi.nlm.nih.gov/gene/?term=YE1843
YE1843a	YE1843a		YE1843a	2026484	2026678	-	hypothetical protein		gene	gene1824	http://www.ncbi.nlm.nih.gov/gene/?term=YE1843a
YE1844	YE1844		YE1844	2025511	2026059	-			gene	gene1823	http://www.ncbi.nlm.nih.gov/gene/?term=YE1844
YE1845	YE1845		YE1845	2026785	2027630	-	inner membrane protein	Similar to many proteins of undefined function including: Rhizobium loti hypothetical protein Mll3062 SWALL:Q98H24 (EMBL:AP003001) (281 aa) fasta scores: E(): 6.7e-39%2C 43.06 38d in 281 aa and Brucella melitensis transporter%2C Dme family Bmei1244 SWALL:Q8YGB5 (EMBL:AE009563) (281 aa) fasta scores: E(): 3.5e-34%2C 39 id in 282 aa	gene	gene1825	http://www.ncbi.nlm.nih.gov/gene/?term=YE1845
YE1846	YE1846		YE1846	2027865	2028122	+	hypothetical protein		gene	gene1826	http://www.ncbi.nlm.nih.gov/gene/?term=YE1846
YE1847	YE1847		YE1847	2028284	2029324	+	inner membrane protein	Similar to many proteins of undefined function including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YnaI or b1330 or z2437 or ecs1912 SWALL:YNAI_ECOLI (SWALL:P77253) (343 aa) fasta scores: E(): 1.7e-83%2C 60.4 38d in 346 aa and Aquifex aeolicus hypothetical protein Aq_812 SWALL:Y812_AQUAE (SWALL:O66994) (368 aa) fasta scores: E(): 1e-20%2C 26.92 id in 338 aa	gene	gene1827	http://www.ncbi.nlm.nih.gov/gene/?term=YE1847
YE1848	YE1848		YE1848	2029506	2030141	+	transferase	Similar to many proposed glutathione-S transferases including: Escherichia coli hypothetical GST-like protein YfcF or b2301 SWALL:YFCF_ECOLI (SWALL:P77544) (214 aa) fasta scores: E(): 2.4e-45%2C 60.28 38d in 214 aa and Salmonella typhi putative glutathione-S transferase Sty2578 SWALL:Q8Z514 (EMBL:AL627274) (214 aa) fasta scores: E(): 7.2e-47%2C 60.66 38d in 211 aa. Also weakly similar to Eukaryotic transferases including: Mus musculus glutathione S-transferase theta 1 GstT1 SWALL:GTT1_MOUSE (SWALL:Q64471) (239 aa) fasta scores: E(): 1.6e-06%2C 30 38d in 130 aa	gene	gene1828	http://www.ncbi.nlm.nih.gov/gene/?term=YE1848
YE1849	YE1849		YE1849	2030211	2030759	+	acetyl transferase	Similar to Proteus mirabilis putative acetyl transferase SWALL:O86434 (EMBL:AJ000084) (185 aa) fasta scores: E(): 1.9e-34%2C 53.14 38d in 175 aa and Streptomyces coelicolor putative acetyltranferase Sco7447 or Sc5c11.04C SWALL:Q9L168 (EMBL:AL158060) (183 aa) fasta scores: E(): 6.3e-27%2C 47.45 38d in 177 aa	gene	gene1829	http://www.ncbi.nlm.nih.gov/gene/?term=YE1849
YE1850	YE1850		YE1850	2031267	2031500	+	hypothetical protein		gene	gene1830	http://www.ncbi.nlm.nih.gov/gene/?term=YE1850
YE1853	YE1853		YE1853	2032223	2032612	+	hypothetical protein		gene	gene1831	http://www.ncbi.nlm.nih.gov/gene/?term=YE1853
YE1854	YE1854		YE1854	2032730	2032972	-	hypothetical protein	Similar to several proteins of undefined function including: Yersinia pestis hypothetical protein Ypo1694 SWALL:Q8ZFK9 (EMBL:AJ414150) (79 aa) fasta scores: E(): 1.9e-24%2C 76.25 38d in 80 aa%2C Salmonella typhi hypothetical protein Sty1982 SWALL:Q8Z661 (EMBL:AL627272) (79 aa) fasta scores: E(): 6.8e-16%2C 55.69 38d in 79 aa and Escherichia coli hypothetical protein YebV or b1836 SWALL:YEBV_ECOLI (SWALL:P76274) (78 aa) fasta scores: E(): 7.9e-15%2C 53.94 38d in 76 aa	gene	gene1832	http://www.ncbi.nlm.nih.gov/gene/?term=YE1854
YE1855	YE1855		YE1855	2033085	2034794	-	hypothetical protein	Similar over the entire length to Rhizobium sp. hypothetical protein Y4lL SWALL:Y4LL_RHISN (SWALL:P55552) (827 aa) fasta scores: E(): 6e-22%2C 26.66 38d in 540 aa. Similar in the C-terminus to several proposed two-component regulatory proteins e.g. Synechocystis sp. regulatory components of sensory transduction system Sll1673 SWALL:P72790 (EMBL:D90900) (452 aa) fasta scores: E(): 1.1e-25%2C 46.31 38d in 190 aa%2C and to Synechocystis sp. pled pled or slr0829 SWALL:Q55414 (EMBL:D64003) (829 aa) fasta scores: E(): 3.2e-23%2C 31.92 38d in 451 aa and Pseudomonas aeruginosa probable two-component response regulator Pa3702 SWALL:Q9HXT9 (EMBL:AE004789) (347 aa) fasta scores: E(): 3.2e-23%2C 44.08 38d in 186 aa	gene	gene1833	http://www.ncbi.nlm.nih.gov/gene/?term=YE1855
YE1856	YE1856		YE1856	2035017	2036027	-	hypothetical protein		gene	gene1834	http://www.ncbi.nlm.nih.gov/gene/?term=YE1856
YE1857	YE1857		YE1857	2036058	2038499	-	outer membrane usher protein		gene	gene1835	http://www.ncbi.nlm.nih.gov/gene/?term=YE1857
YE1858	YE1858		YE1858	2038586	2039335	-	chaperone protein		gene	gene1836	http://www.ncbi.nlm.nih.gov/gene/?term=YE1858
YE1859	YE1859		YE1859	2039382	2039939	-	hypothetical protein	Also similar to YE1861 27.473 38dentity in 182 aa overlap and YE1860 34.463 38dentity in 177 aa overlap	gene	gene1837	http://www.ncbi.nlm.nih.gov/gene/?term=YE1859
YE1860	YE1860		YE1860	2039950	2040507	-	hypothetical protein	Also similar to YE1861 35.795 38dentity in 176 aa overlap and YE1859 34.831 38dentity in 178 aa overlap	gene	gene1838	http://www.ncbi.nlm.nih.gov/gene/?term=YE1860
YE1861	YE1861		YE1861	2040513	2041067	-	hypothetical protein	Also similar to YE1860 35.795 38dentity in 176 aa overlap and YE1859 26.519 38dentity in 181 aa overlap	gene	gene1839	http://www.ncbi.nlm.nih.gov/gene/?term=YE1861
YE1862	YE1862		YE1862	2041377	2042801	-	membrane transport protein	Similar to many membrane transport proteins including: Rhizobium loti probable transmembrane efflux protein Mr1142 SWALL:Q98L80 (EMBL:AP002996) (490 aa) fasta scores: E(): 4.8e-81%2C 53.47 38d in 475 aa and Streptomyces glaucescens tetracenomycin C resistance and export protein TcmA SWALL:TCMA_STRGA (SWALL:P39886) (538 aa) fasta scores: E(): 6.8e-26%2C 29.29 38d in 413 aa	gene	gene1840	http://www.ncbi.nlm.nih.gov/gene/?term=YE1862
YE1863	YE1863		YE1863	2042930	2043850	+	LysR family transcriptional regulator	Similar to many LysR-family transcriptional regulatory proteins including: Pseudomonas putida transcriptional activator protein NahR SWALL:NAHR_PSEPU (SWALL:P10183) (300 aa) fasta scores: E(): 2.5e-19%2C 31.1 id in 299 aa%2C Rhizobium meliloti putative transcription regulator protein R00218 or Smc02893 SWALL:Q92SY0 (EMBL:AL591782) (308 aa) fasta scores: E(): 2.3e-69%2C67.23 38d in 296 aa%2C and to Rhizobium meliloti nodulation protein D I NodD1 or ra0476 or sma0870 SWALL:NOD1_RHIME (SWALL:P03031) (308 aa) fasta scores: E(): 5e-17%2C 33.22 id in 295 aa	gene	gene1841	http://www.ncbi.nlm.nih.gov/gene/?term=YE1863
YE1864	YE1864		YE1864	2043863	2046493	-	hypothetical protein		gene	gene1842	http://www.ncbi.nlm.nih.gov/gene/?term=YE1864
YE1865	YE1865	yebS	yebS	2046462	2047709	-	hypothetical protein		gene	gene1843	http://www.ncbi.nlm.nih.gov/gene/?term=YE1865
YE1866	YE1866		YE1866	2047950	2048447	+	hypothetical protein		gene	gene1844	http://www.ncbi.nlm.nih.gov/gene/?term=YE1866
YE1867	YE1867	proQ	proQ	2048543	2049271	+	solute/DNA competence effector	affects solute and DNA transport through an unknown mechanism	gene	gene1845	http://www.ncbi.nlm.nih.gov/gene/?term=YE1867
YE1868	YE1868	prc	prc	2049291	2051366	+	carboxy-terminal protease	Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3	gene	gene1846	http://www.ncbi.nlm.nih.gov/gene/?term=YE1868
YE1869	YE1869	htpX	htpX	2051661	2052542	+	heat shock protein HtpX	putative metalloprotease	gene	gene1847	http://www.ncbi.nlm.nih.gov/gene/?term=YE1869
YE1870	YE1870		YE1870	2052949	2053968	-	transposase for IS1667	Similar to Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 5.3e-56%2C 46.68 38d in 332 aa and to Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 3e-50%2C 42.47 38d in 332 aa	gene	gene1848	http://www.ncbi.nlm.nih.gov/gene/?term=YE1870
YE1871	YE1871		YE1871	2054157	2054585	-	lipoprotein	Similar to Escherichia coli O157:H7 Z0638 lipoprotein or ecs0546 SWALL:Q8XD08 (EMBL:AE005230) (140 aa) fasta scores: E(): 1.1e-18%2C 48.93 38d in 141 aa	gene	gene1849	http://www.ncbi.nlm.nih.gov/gene/?term=YE1871
YE1872	YE1872		YE1872	2054582	2054731	-	hypothetical protein	no significant database hits	gene	gene1850	http://www.ncbi.nlm.nih.gov/gene/?term=YE1872
YE1873	YE1873		YE1873	2054736	2055374	-	hypothetical protein	Similar in the C-terminus to many YadA-like exproted proteins including: to Yersinia enterocolitica invasin precursor YadA or YopA or inva or yop1 SWALL:YADA_YEREN (SWALL:P31489) (455 aa) fasta scores: E(): 0.028%2C 24.42 38d in 131 aa%2C Yersinia pestis putative exported protein Ypo1387 SWALL:Q8ZGB6 (EMBL:AJ414148) (364 aa) fasta scores: E(): 6.7e-05%2C 26.15 38d in 195 aa and Yersinia pseudotuberculosis invasin precursor YadA or YopA or inva or yop1 SWALL:YADA_YERPS (SWALL:P10858) (434 aa) fasta scores: E(): 0.011%2C 26.51 38d in 132 aa	gene	gene1851	http://www.ncbi.nlm.nih.gov/gene/?term=YE1873
YE1874	YE1874		YE1874	2055684	2056085	+	DNA-binding protein	no significant database hits	gene	gene1852	http://www.ncbi.nlm.nih.gov/gene/?term=YE1874
YE1875	YE1875		YE1875	2056110	2057477	-	transport protein		gene	gene1853	http://www.ncbi.nlm.nih.gov/gene/?term=YE1875
YE1876	YE1876	ogl	ogl	2057802	2058968	+	oligogalacturonate lyase		gene	gene1854	http://www.ncbi.nlm.nih.gov/gene/?term=YE1876
YE1877	YE1877	kdgR	kdgR	2059155	2059946	+	IclR family transcriptional regulator		gene	gene1855	http://www.ncbi.nlm.nih.gov/gene/?term=YE1877
YE1878	YE1878	b0867	b0867	2060222	2061073	+	N-acetylmuramoyl-L-alanine amidase		gene	gene1856	http://www.ncbi.nlm.nih.gov/gene/?term=YE1878
YE1879	YE1879	gltP	gltP	2061299	2062696	-	transport protein		gene	gene1857	http://www.ncbi.nlm.nih.gov/gene/?term=YE1879
YE1880	YE1880		YE1880	2062909	2063457	-	hypothetical protein		gene	gene1858	http://www.ncbi.nlm.nih.gov/gene/?term=YE1880
YE1881	YE1881		YE1881	2063815	2064513	-	hypothetical protein		gene	gene1859	http://www.ncbi.nlm.nih.gov/gene/?term=YE1881
YE1882	YE1882		YE1882	2064819	2066111	-	sugar-binding protein		gene	gene1860	http://www.ncbi.nlm.nih.gov/gene/?term=YE1882
YE1883	YE1883		YE1883	2066127	2067254	-	sugar ABC transporter		gene	gene1861	http://www.ncbi.nlm.nih.gov/gene/?term=YE1883
YE1884	YE1884		YE1884	2067268	2068107	-	sugar ABC transporter permease		gene	gene1862	http://www.ncbi.nlm.nih.gov/gene/?term=YE1884
YE1885	YE1885		YE1885	2068178	2069068	-	sugar ABC transporter permease		gene	gene1863	http://www.ncbi.nlm.nih.gov/gene/?term=YE1885
YE1886	YE1886	kdgC	kdgC	2069109	2070776	-	exopolygalacturonate lyase		gene	gene1864	http://www.ncbi.nlm.nih.gov/gene/?term=YE1886
YE1887	YE1887	kduD1	kduD1	2071104	2071865	-	2-deoxy-D-gluconate 3-dehydrogenase	catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate	gene	gene1865	http://www.ncbi.nlm.nih.gov/gene/?term=YE1887
YE1888	YE1888	kduI	kduI	2071977	2072813	-	5-keto-4-deoxyuronate isomerase	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase%3B catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2%2C5-hexodiulosonate	gene	gene1866	http://www.ncbi.nlm.nih.gov/gene/?term=YE1888
YE1889	YE1889	kdgF	kdgF	2073051	2073383	+	pectin degradation protein		gene	gene1867	http://www.ncbi.nlm.nih.gov/gene/?term=YE1889
YE1890	YE1890		YE1890	2073494	2074159	-	2-deoxyglucose-6-phosphatase	YniC%3B catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate%2C mannose 6-phosphate and p-nitrophenyl phosphate	gene	gene1868	http://www.ncbi.nlm.nih.gov/gene/?term=YE1890
YE1891	YE1891	yfeE	yfeE	2074409	2074963	+	yfeABCD locus regulator		gene	gene1869	http://www.ncbi.nlm.nih.gov/gene/?term=YE1891
YE1892	YE1892		YE1892	2075357	2076247	+	LysR family transcriptional regulator		gene	gene1870	http://www.ncbi.nlm.nih.gov/gene/?term=YE1892
YE1893	YE1893		YE1893	2076244	2077725	-	4-hydroxybutyrate coenzyme A transferase		gene	gene1871	http://www.ncbi.nlm.nih.gov/gene/?term=YE1893
YE1894	YE1894		YE1894	2077751	2078536	-	methylmalonyl-CoA decarboxylase	catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA	gene	gene1872	http://www.ncbi.nlm.nih.gov/gene/?term=YE1894
YE1894A	YE1894A		YE1894A	2078550	2079545	-	arginine/ornithine transport system ATPase	functions in transport of arginine/ornithine%3B inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems%2C the AO (arginine and ornithine) and LAO (lysine%2C arginine%2C and ornithine) periplasmic binding proteins	gene	gene1873	http://www.ncbi.nlm.nih.gov/gene/?term=YE1894A
YE1895	YE1895		YE1895	2079538	2081682	-	methylmalonyl-CoA mutase	MDM%3B functions in conversion of succinate to propionate	gene	gene1874	http://www.ncbi.nlm.nih.gov/gene/?term=YE1895
YE1896	YE1896		YE1896	2081969	2082838	-	hypothetical protein		gene	gene1875	http://www.ncbi.nlm.nih.gov/gene/?term=YE1896
YE1897	YE1897		YE1897	2083254	2084141	-	chelated iron transport system membrane protein		gene	gene1876	http://www.ncbi.nlm.nih.gov/gene/?term=YE1897
YE1898	YE1898		YE1898	2084138	2085022	-	chelated iron transport system membrane protein		gene	gene1877	http://www.ncbi.nlm.nih.gov/gene/?term=YE1898
YE1899	YE1899		YE1899	2085022	2085912	-	ATP-binding transport protein		gene	gene1878	http://www.ncbi.nlm.nih.gov/gene/?term=YE1899
YE1900	YE1900		YE1900	2085909	2086877	-	substrate-binding protein		gene	gene1879	http://www.ncbi.nlm.nih.gov/gene/?term=YE1900
YE1901	YE1901		YE1901	2087089	2087751	+	membrane-bound lytic murein transglycosylase		gene	gene1880	http://www.ncbi.nlm.nih.gov/gene/?term=YE1901
YE1902	YE1902	marC	marC	2087962	2088645	-	multiple drug resistance protein MarC	protein involved in resistance to different drugs (tetracycline%2C chloramphenicol%2C beta-lactams%2C and quinolones)%3B part of the multiple antibiotic resistance (mar) locus%2C which is composed by the genes marC and marRAB%3B unknown function	gene	gene1881	http://www.ncbi.nlm.nih.gov/gene/?term=YE1902
YE1904	YE1904		YE1904	2089053	2089337	+	hypothetical protein		gene	gene1882	http://www.ncbi.nlm.nih.gov/gene/?term=YE1904
YE1905	YE1905		YE1905	2089426	2089764	+	hypothetical protein	weakly similar to: Agrobacterium tumefaciens hypothetical protein Atu0742 or agr_c_1343 SWALL:Q8UHE0 (EMBL:AE009042) (123 aa) fasta scores: E(): 6.4e-08%2C36.44 38d in 107 aa%2C Caulobacter crescentus hypothetical protein Cc1951 SWALL:Q9A6X5 (EMBL:AE005868) (110 aa) fasta scores: E(): 0.029%2C 27.77 38d in 90 aa and Halobacterium sp. Vng0367H SWALL:Q9HS78 (EMBL:AE004995) (114 aa) fasta scores: E(): 0.049%2C 34.65 38d in 101 aa	gene	gene1883	http://www.ncbi.nlm.nih.gov/gene/?term=YE1905
YE1906	YE1906		YE1906	2089809	2090045	+	hypothetical protein	weakly similar to Pasteurella multocida hypothetical protein Pm1196 SWALL:Q9CLM6 (EMBL:AE006160) (84 aa) fasta scores: E(): 8e-10%2C 44 38d in 75 aa	gene	gene1884	http://www.ncbi.nlm.nih.gov/gene/?term=YE1906
YE1909	YE1909		YE1909	2090816	2091529	+	inner membrane protein	Similar to many proteins of undefined function including: Escherichia coli hypothetical protein YqgA or b2966 SWALL:YQGA_ECOLI (SWALL:Q46831) (235 aa) fasta scores: E(): 2.1e-37%2C 46.12 38d in 232 aa and Salmonella typhimurium%2C and Salmonella typhi putative inner membrane protein YqgA or Stm3115 or Sty3272 SWALL:Q8XGN5 (EMBL:AE008843) (235 aa) fasta scores: E(): 9.4e-36%2C43.83 38d in 235 aa	gene	gene1885	http://www.ncbi.nlm.nih.gov/gene/?term=YE1909
YE1910	YE1910		YE1910	2091649	2091861	-	hypothetical protein		gene	gene1886	http://www.ncbi.nlm.nih.gov/gene/?term=YE1910
YE1912	YE1912	thrS	thrS	2092185	2094113	+	threonyl-tRNA synthetase	catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)%3B catalyzes a two-step reaction%2C first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA	gene	gene1887	http://www.ncbi.nlm.nih.gov/gene/?term=YE1912
YE1913	YE1913	infC	infC	2094117	2094668	+	translation initiation factor IF-3	IF-3 has several functions that are required and promote translation initiation including%3B preventing association of 70S by binding to 30S%3B monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites%3B stimulates codon-anticodon interactions at P-site%3B involved in moving mRNA to the P-site%3B and in recycling subunits	gene	gene1888	http://www.ncbi.nlm.nih.gov/gene/?term=YE1913
YE1914	YE1914	rpmI	rpmI	2094765	2094962	+	50S ribosomal protein L35		gene	gene1889	http://www.ncbi.nlm.nih.gov/gene/?term=YE1914
YE1915	YE1915	rplT	rplT	2095000	2095356	+	50S ribosomal protein L20	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit	gene	gene1890	http://www.ncbi.nlm.nih.gov/gene/?term=YE1915
YE1916	YE1916	pheS	pheS	2095821	2096804	+	phenylalanyl-tRNA synthetase subunit alpha	catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a heterotetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 1 subfamily	gene	gene1891	http://www.ncbi.nlm.nih.gov/gene/?term=YE1916
YE1917	YE1917	pheT	pheT	2096819	2099206	+	phenylalanyl-tRNA synthetase subunit beta	catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a tetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 2 subfamily	gene	gene1892	http://www.ncbi.nlm.nih.gov/gene/?term=YE1917
YE1918	YE1918	ihfA	ihfA	2099211	2099507	+	integration host factor subunit alpha	This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control	gene	gene1893	http://www.ncbi.nlm.nih.gov/gene/?term=YE1918
YE1919	YE1919	trp1400A	trp1400A	2099704	2099994	+	IS1400 transposase A	Previously sequenced as Yersinia enterocolitica IS1400 transposase A Trp1400A SWALL:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 4.7e-32%2C 97.91 38d in 96 aa%2Cand to Yersinia pestis putative transposase Y0084 or Ypcd1.93 SWALL:O68709 (EMBL:AF053946) (88 aa) fasta scores: E(): 7.8e-15%2C 52.27 38d in 88 aa	gene	gene1894	http://www.ncbi.nlm.nih.gov/gene/?term=YE1919
YE1920	YE1920	trp1400B	trp1400B	2100045	2100529	+			gene	gene1895	http://www.ncbi.nlm.nih.gov/gene/?term=YE1920
YE1921	YE1921		YE1921	2100789	2101721	-	transposase	Similar to many proteins of undefined function%2Cthat are thought to represent a novel family of transposases%2Cincluding: Yersinia pestis hypothetical protein Ypo0076 SWALL:Q8ZJL8 (EMBL:AJ414141) (319 aa) fasta scores: E(): 1.8e-100%2C 84.83 38d in 310 aa and to Salmonella typhimurium hypothetical protein Pslt051 SWALL:YTL2_SALTY (SWALL:P37415) (313 aa) fasta scores: E(): 7.2e-73%2C 61.03 38d in 308 aa. Additional copies of this element are represented by YE1924%2C YE1655 and YE3497. There are also two partial sequences represented by YE1656 and YE1925.	gene	gene1896	http://www.ncbi.nlm.nih.gov/gene/?term=YE1921
YE1922	YE1922		YE1922	2101983	2102270	+	proteic toxin protein	Similar to Escherichia coli plasmid Rts1 killer protein HigB%2C part of the HigBA toxin/antidote plasmid maintenance system%2C SWALL:Q52305 (EMBL:U43847) (92 aa) fasta scores: E(): 3.3e-17%2C 56.84 38d in 95 aa%2C and to Xylella fastidiosa proteic killer protein Xf0721 SWALL:Q9PFE9 (EMBL:AE003914) (105 aa) fasta scores: E(): 1.7e-09%2C 39.58 38d in 96 aa	gene	gene1897	http://www.ncbi.nlm.nih.gov/gene/?term=YE1922
YE1923	YE1923		YE1923	2102270	2102584	+	antidote protein	Similar to Escherichia coli plasmid Rts1 antidote protein HigA SWALL:Q52306 (EMBL:U43847) (104 aa) fasta scores: E(): 2.2e-08%2C 38.63 38d in 88 aa%2C Escherichia coli hypothetical protein YddM or b1477 SWALL:YDDM_ECOLI (SWALL:P76125) (94 aa) fasta scores: E(): 3e-10%2C 42.85 38d in 91 aa	gene	gene1898	http://www.ncbi.nlm.nih.gov/gene/?term=YE1923
YE1924	YE1924		YE1924	2102751	2103647	-	transposase	Similar to many proteins%2C of undefined function%2Cthat are thought to represent a novel family of transposases%2C including: Escherichia coli hypothetical protein Yhga or b3411 SWALL:YHGA_ECOLI (SWALL:P31667) (292 aa) fasta scores: E(): 3.9e-62%2C 55.97 38d in 293 aa%2CYersinia pestis putative transposase Y1072 or Ypmt1.71 SWALL:O68786 (EMBL:AF074611) (328 aa) fasta scores: E(): 5.7e-63%2C 57.18 38d in 320 aa and Escherichia coli hypothetical protein YadD or b0132 SWALL:YADD_ECOLI (SWALL:P31665) (300 aa) fasta scores: E(): 4.2e-55%2C 51.87 id in 293 aa. Additional copies of this element are represented by YE1921%2C YE1655 and YE3497. There are also two partial sequences represented by YE1656 and YE1925.	gene	gene1899	http://www.ncbi.nlm.nih.gov/gene/?term=YE1924
YE1925	YE1925		YE1925	2103853	2103990	-			gene	gene1900	http://www.ncbi.nlm.nih.gov/gene/?term=YE1925
YE1926	YE1926		YE1926	2104468	2104788	-	hypothetical protein	doubtful CDS with no significant database hits	gene	gene1901	http://www.ncbi.nlm.nih.gov/gene/?term=YE1926
YE1927	YE1927		YE1927	2105114	2105293	+	hypothetical protein	doubtful CDS with no significant database hits	gene	gene1902	http://www.ncbi.nlm.nih.gov/gene/?term=YE1927
YE1928	YE1928		YE1928	2105365	2105625	+	DinJ-like protein	Similar to Escherichia coli DNA-damage-inducible protein J DinJ or b0226 SWALL:DINJ_ECOLI (SWALL:Q47150) (86 aa) fasta scores: E(): 1.4e-24%2C 82.55 38d in 86 aa and to Yersinia pestis plasmid pYV Orf11 SWALL:Q9RPP0 (EMBL:AF152923) (86 aa) fasta scores: E(): 1.5e-25%2C 84.88 id in 86 aa	gene	gene1903	http://www.ncbi.nlm.nih.gov/gene/?term=YE1928
YE1929	YE1929		YE1929	2105632	2105910	+	hypothetical protein	Similar to Yersinia pestis plasmid pYV Orf10 SWALL:Q9RPN9 (EMBL:AF152923) (92 aa) fasta scores: E(): 2.8e-31%2C 85.87 38d in 92 aa and to Escherichia coli hypothetical protein%2C endcoded adjacent to dinJ%2C YafQ or b0225 SWALL:YAFQ_ECOLI (SWALL:Q47149) (92 aa) fasta scores: E(): 1.8e-27%2C 77.52 38d in 89 aa	gene	gene1904	http://www.ncbi.nlm.nih.gov/gene/?term=YE1929
YE1930	YE1930		YE1930	2105953	2106567	-	phage tail fiber assembly protein	Similar to the tail fibre assembly proteins from many lambdoid phage: Escherichia coli tail fiber assembly protein homolog from lambdoid prophage Rac TfaR or b1373 SWALL:TFAR_ECOLI (SWALL:P77163) (191 aa) fasta scores: E(): 4.2e-19%2C 38.29 38d in 188 aa%2C Escherichia coli tail fiber assembly protein homolog from lambdoid prophage E14 tfae or b1156 SWALL:TFAE_ECOLI (SWALL:P09153) (200 aa) fasta scores: E(): 2.5e-20%2C 36.5 38d in 200 aa and to Yersinia pestis lambda tail fiber assembly protein G Y1053 or Ypmt1.03C SWALL:O68721 (EMBL:AF074611) (202 aa) fasta scores: E(): 5.4e-20%2C 38.74 38d in 191 aa	gene	gene1905	http://www.ncbi.nlm.nih.gov/gene/?term=YE1930
YE1931	YE1931		YE1931	2106745	2107629	-	phage tail fiber protein	Similar to the variable tail fiber proteins of many P2 bacteriophage: Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 2e-16%2C 35.88 38d in 248 aa%2C Salmonella typhi probable variable tail fibre protein Sty3691 SWALL:Q8Z343 (EMBL:AL627279) (504 aa) fasta scores: E(): 2.1e-28%2C57.55 38d in 139 aa and Salmonella typhimurium Fels-2 prophage: similar to tail fiber protein in phage P2 stm2706 SWALL:Q8ZMU5 (EMBL:AE008823) (524 aa) fasta scores: E(): 5.3e-28%2C 57.55 38d in 139 aa	gene	gene1906	http://www.ncbi.nlm.nih.gov/gene/?term=YE1931
YE1933	YE1933	putA	putA	2108495	2112484	-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase	proline utilization protein A%3B multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate%3B in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus%3B forms dimers and is a peripherally membrane-associated protein	gene	gene1907	http://www.ncbi.nlm.nih.gov/gene/?term=YE1933
YE1934	YE1934	putP	putP	2113011	2114495	+	proline permease		gene	gene1908	http://www.ncbi.nlm.nih.gov/gene/?term=YE1934
YE1935	YE1935	tpn1330	tpn1330	2114588	2115781	-	transposase for IS1330	Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:Q8RSF5 (EMBL:AJ344215) (397 aa) fasta scores: E(): 1.4e-162%2C99.49 38d in 397 aa. Also similar to Shigella flexneri%2Cand Shigella flexneri 2a is10 orf s0034 or cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 6.7e-113%2C 68.26 38d in 397 aa	gene	gene1909	http://www.ncbi.nlm.nih.gov/gene/?term=YE1935
YE1936	YE1936		YE1936	2115973	2116302	-	hypothetical protein		gene	gene1910	http://www.ncbi.nlm.nih.gov/gene/?term=YE1936
YE1937	YE1937		YE1937	2116306	2117373	-	hypothetical protein	Similar to Yersinia pestis hypothetical protein Ypo1258 SWALL:Q8ZGM9 (EMBL:AJ414147) (382 aa) fasta scores: E(): 7.2e-48%2C 57.58 38d in 257 aa and to Yersinia pestis hypothetical protein Ypo0639 SWALL:Q8ZI76 (EMBL:AJ414143) (460 aa) fasta scores: E(): 4.8e-33%2C39.13 38d in 345 aa	gene	gene1911	http://www.ncbi.nlm.nih.gov/gene/?term=YE1937
YE1938	YE1938		YE1938	2118101	2118961	+	hypothetical protein		gene	gene1912	http://www.ncbi.nlm.nih.gov/gene/?term=YE1938
YE1939	YE1939		YE1939	2118978	2120108	+	hypothetical protein		gene	gene1913	http://www.ncbi.nlm.nih.gov/gene/?term=YE1939
YE1940	YE1940		YE1940	2120360	2121415	+	hypothetical protein		gene	gene1914	http://www.ncbi.nlm.nih.gov/gene/?term=YE1940
YE1941	YE1941	wrbA	wrbA	2121474	2122073	-	TrpR binding protein WrbA	stationary phase protein that binds TrpR repressor	gene	gene1915	http://www.ncbi.nlm.nih.gov/gene/?term=YE1941
YE1942	YE1942		YE1942	2122243	2122725	-	DNA-binding protein	The database hits for the predicted product of this CDS are restricted to its H-T-H DNA-binding motif: Vibrio cholerae biovar eltor hypothetical protein SWALL:Q939J0 (EMBL:AY035340) (136 aa) fasta scores: E(): 8.6e-06%2C 53.7 id in 54 aa and to Salmonella typhimurium fels-1 prophage%2Cpredicted transcriptional regulator Stm0898 SWALL:Q8ZQI4 (EMBL:AE008737) (231 aa) fasta scores: E(): 0.041%2C 42.62 id in 61 aa	gene	gene1916	http://www.ncbi.nlm.nih.gov/gene/?term=YE1942
YE1943	YE1943		YE1943	2123059	2124237	+	N-acetylneuraminic acid mutarotase		gene	gene1917	http://www.ncbi.nlm.nih.gov/gene/?term=YE1943
YE1944	YE1944		YE1944	2124441	2125778	-	membrane permease	Similar to many permeases including: Escherichia coli%2C and Escherichia coli O157:H7 uracil permease UraA or b2497 or z3760 or ecs3359 SWALL:URAA_ECOLI (SWALL:P33780) (429 aa) fasta scores: E(): 9.9e-46%2C 37.35 38d in 423 aa%2CEscherichia coli putative purine permease YcdG or b1006 SWALL:YCDG_ECOLI (SWALL:P75892) (442 aa) fasta scores: E(): 6.4e-121%2C 78.6 38d in 430 aa and to Bacillus caldolyticus uracil permease PyrP SWALL:PYRP_BACCL (SWALL:P41006) (432 aa) fasta scores: E(): 3.9e-48%2C 37.85 id in 428 aa	gene	gene1918	http://www.ncbi.nlm.nih.gov/gene/?term=YE1944
YE1945	YE1945	hpaC	hpaC	2125848	2126396	-	4-hydroxyphenylacetate 3-monooxygenase coupling protein		gene	gene1919	http://www.ncbi.nlm.nih.gov/gene/?term=YE1945
YE1946	YE1946		YE1946	2126447	2127037	-	hypothetical protein	Weakly similar to Escherichia coli oxygen-insensitive NAD NfnB or nfsi or nfsb or ntr or dpra or b0578 SWALL:NFNB_ECOLI (SWALL:P38489) (217 aa) fasta scores: E(): 1.1%2C 25 38d in 180 aa. Also similar to many other proposed dehydrogenases e.g. Escherichia coli putative NADH dehydrogenase/NAD ycdi or b1008 SWALL:YCDI_ECOLI (SWALL:P75894) (196 aa) fasta scores: E(): 2.6e-53%2C 67.85 38d in 196 aa	gene	gene1920	http://www.ncbi.nlm.nih.gov/gene/?term=YE1946
YE1947	YE1947		YE1947	2127049	2127885	-	hydrolase	Similar to Agrobacterium tumefaciens hydrolase Atu2497 or agr_c_4537 SWALL:Q8UCI8 (EMBL:AE009196) (281 aa) fasta scores: E(): 2e-46%2C 46.48 38d in 256 aa and Acinetobacter calcoaceticus 3-oxoadipate enol-lactonase I PcaD SWALL:ELH1_ACICA (SWALL:Q59093) (266 aa) fasta scores: E(): 2.4e-11%2C 28.8 38d in 250 aa	gene	gene1921	http://www.ncbi.nlm.nih.gov/gene/?term=YE1947
YE1948	YE1948		YE1948	2127918	2128307	-	hypothetical protein	Similar to many proteins of undefined function including: Caulobacter crescentus hypothetical protein Cc2796 SWALL:Q9A4N4 (EMBL:AE005945) (129 aa) fasta scores: E(): 2.3e-37%2C 75.78 38d in 128 aa and Escherichia coli hypothetical protein YdK or b1010 SWALL:YCDK_ECOLI (SWALL:P75896) (128 aa) fasta scores: E(): 7.6e-37%2C 72.65 id in 128 aa	gene	gene1922	http://www.ncbi.nlm.nih.gov/gene/?term=YE1948
YE1949	YE1949		YE1949	2128354	2129046	-	isochorismatase	Similar to many proposed isochorismatases including: Escherichia coli hypothetical isochorismatase family protein YcdL or b1011 SWALL:YCDL_ECOLI (SWALL:P75897) (230 aa) fasta scores: E(): 1.7e-72%2C 79.73 id in 222 aa and to Escherichia coli O157:H7 hypothetical isochorismatase family protein YcdL or z1510 or ecs1257 SWALL:YCDL_ECO57 (SWALL:Q8XAU3) (230 aa) fasta scores: E(): 7.8e-72%2C 78.82 38d in 222 aa	gene	gene1923	http://www.ncbi.nlm.nih.gov/gene/?term=YE1949
YE1950	YE1950	ssuD	ssuD	2129142	2130245	-	alkanesulfonate monooxygenase		gene	gene1924	http://www.ncbi.nlm.nih.gov/gene/?term=YE1950
YE1951	YE1951		YE1951	2130561	2131229	+	TetR family transcriptional regulator	Similar to many proposed transcriptional regulators including: Salmonella typhimurium putative transcriptional repressor YcdC or Stm1122 SWALL:Q8ZQ38 (EMBL:AE008748) (212 aa) fasta scores: E(): 7.6e-51%2C 61.83 38d in 207 aa%2CEscherichia coli hypothetical transcriptional regulator YcdC or b1013 SWALL:YCDC_ECOLI (SWALL:P75899) (212 aa) fasta scores: E(): 1.2e-48%2C 60.89 38d in 202 aa and Agrobacterium tumefaciens transcriptional regulator%2C TetR family atu2384 or agr_c_4325 SWALL:Q8UCU9 (EMBL:AE009186) (213 aa) fasta scores: E(): 5e-33%2C 43.56 38d in 202 aa	gene	gene1925	http://www.ncbi.nlm.nih.gov/gene/?term=YE1951
YE1952	YE1952	cycA	cycA	2131475	2132905	-	D-alanine/D-serine/glycine permease	involved in the transport across the cytoplasmic membrane of D-alanine%2C D-serine and glycine	gene	gene1926	http://www.ncbi.nlm.nih.gov/gene/?term=YE1952
YE1952a	YE1952a		YE1952a	2133490	2133708	-	DNA-binding transcriptional regulator		gene	gene1928	http://www.ncbi.nlm.nih.gov/gene/?term=YE1952a
YE1953	YE1953		YE1953	2133792	2134244	-			gene	gene1929	http://www.ncbi.nlm.nih.gov/gene/?term=YE1953
YE1954	YE1954		YE1954	2134253	2134506	-			gene	gene1930	http://www.ncbi.nlm.nih.gov/gene/?term=YE1954
YE1955	YE1955		YE1955	2134685	2135071	-	hypothetical protein	no significant database hits	gene	gene1931	http://www.ncbi.nlm.nih.gov/gene/?term=YE1955
YE1956	YE1956		YE1956	2135627	2136328	-	LuxR family transcriptional regulator	Weakly similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 3.6e-09%2C 26.6 id in 203 aa	gene	gene1932	http://www.ncbi.nlm.nih.gov/gene/?term=YE1956
YE1957	YE1957		YE1957	2136413	2137696	-	purine and pyrimidine permease	Similar to Escherichia coli cytosine permease CodB or b0336 SWALL:CODB_ECOLI (SWALL:P25525) (419 aa) fasta scores: E(): 6.5e-20%2C 28.06 38d in 424 aa and to Bacillus halodurans cytosine permease bh1882 SWALL:Q9KBP3 (EMBL:AP001513) (445 aa) fasta scores: E(): 1.5e-31%2C31.83 38d in 377 aa	gene	gene1933	http://www.ncbi.nlm.nih.gov/gene/?term=YE1957
YE1958	YE1958		YE1958	2137909	2138673	+	LuxR family transcriptional regulator	Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 1.5e-09%2C27.57 38d in 214 aa and Vibrio cholerae transcriptional regulator%2C LuxR family vca1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 1.3e-07%2C24.05 38d in 237 aa	gene	gene1934	http://www.ncbi.nlm.nih.gov/gene/?term=YE1958
YE1959	YE1959		YE1959	2138910	2139644	-	hypothetical protein	Similar to several including: Stigmatella aurantiaca methyl transferase SWALL:CAD19079 (EMBL:AJ421825) (242 aa) fasta scores: E(): 2e-54%2C 54.13 id in 242 aa and Brucella melitensis ubiquinone/menaquinone biosynthesis methyltransferase UbiE bmei1834 SWALL:Q8YEP4 (EMBL:AE009616) (262 aa) fasta scores: E(): 7.4e-53%2C 52.91 38d in 240 aa	gene	gene1935	http://www.ncbi.nlm.nih.gov/gene/?term=YE1959
YE1960	YE1960		YE1960	2140048	2140545	+	hypothetical protein		gene	gene1936	http://www.ncbi.nlm.nih.gov/gene/?term=YE1960
YE1961	YE1961		YE1961	2140627	2140956	-	hypothetical protein	Similar to Ralstonia solanacearum hypothetical protein Rsc1958 or rs03532 SWALL:Q8XY05 (EMBL:AL646067) (113 aa) fasta scores: E(): 1.3e-28%2C 63.71 38d in 113 aa	gene	gene1937	http://www.ncbi.nlm.nih.gov/gene/?term=YE1961
YE1962	YE1962	amyA	amyA	2141101	2142600	+	alpha-amylase	converts 1%2C4-alpha-D-glucans to maltodextrin	gene	gene1938	http://www.ncbi.nlm.nih.gov/gene/?term=YE1962
YE1963	YE1963		YE1963	2142879	2143127	-	hypothetical protein	doubtful CDS with no significant database hits	gene	gene1939	http://www.ncbi.nlm.nih.gov/gene/?term=YE1963
YE1964	YE1964	acn	acn	2143724	2146396	+	aconitate hydratase	Catalyzes the conversion of citrate to isocitrate	gene	gene1940	http://www.ncbi.nlm.nih.gov/gene/?term=YE1964
YE1965	YE1965	ribA	ribA	2146643	2147233	-	GTP cyclohydrolase II	catalyzes the conversion of GTP to formate and 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate	gene	gene1941	http://www.ncbi.nlm.nih.gov/gene/?term=YE1965
YE1966	YE1966	pgpB	pgpB	2147575	2148336	+	phosphatidylglycerophosphatase B		gene	gene1942	http://www.ncbi.nlm.nih.gov/gene/?term=YE1966
YE1967	YE1967		YE1967	2148532	2148843	+	hypothetical protein		gene	gene1943	http://www.ncbi.nlm.nih.gov/gene/?term=YE1967
YE1968	YE1968		YE1968	2148850	2150019	+	tetratricopeptide repeat protein		gene	gene1944	http://www.ncbi.nlm.nih.gov/gene/?term=YE1968
YE1969	YE1969		YE1969	2150076	2150366	-	hypothetical protein		gene	gene1945	http://www.ncbi.nlm.nih.gov/gene/?term=YE1969
YE1970	YE1970		YE1970	2150571	2151032	-	DNA-binding protein	Similar to many putative transcriptional regulators including: Salmonella typhi putative DNA-binding protein Sty1459 SWALL:Q8Z752 (EMBL:AL627270) (178 aa) fasta scores: E(): 1.4e-36%2C 54.34 38d in 184 aa%2C Vibrio cholerae transcriptional regulator%2C hth_3 family Vc1968 SWALL:Q9KQN0 (EMBL:AE004272) (181 aa) fasta scores: E(): 3.6e-24%2C 46.62 38d in 178 aa and Ralstonia solanacearum putative transcription regulator protein Rsp0962 or Rs02293 SWALL:Q8XR97 (EMBL:AL646082) (182 aa) fasta scores: E(): 1.9e-13%2C 33.53 38d in 164 aa	gene	gene1946	http://www.ncbi.nlm.nih.gov/gene/?term=YE1970
YE1971	YE1971		YE1971	2151310	2152512	+	membrane transporter	Similar to many including: Acinetobacter calcoaceticus benzoate membrane transport protein BenE SWALL:BENE_ACICA (SWALL:P07775) (394 aa) fasta scores: E(): 1.8e-53%2C 41.62 38d in 382 aa and to Salmonella typhimurium putative benzoate membrane transport protein Stm1606 SWALL:Q8ZPC5 (EMBL:AE008770) (392 aa) fasta scores: E(): 2e-79%2C 58.53 38d in 381 aa	gene	gene1947	http://www.ncbi.nlm.nih.gov/gene/?term=YE1971
YE1972	YE1972		YE1972	2152586	2152846	-	hypothetical protein	Similar to many including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein precursor YcfR or B1112 or Z1751 or Ecs1490 SWALL:YCFR_ECOLI (SWALL:P75953) (85 aa) fasta scores: E(): 7.1e-12%2C 57.47 id in 87 aa and to Yersinia pestis putative exported protein Ypo2521 SWALL:Q8ZDN9 (EMBL:AJ414152) (86 aa) fasta scores: E(): 1e-10%2C 47.67 38d in 86 aa	gene	gene1948	http://www.ncbi.nlm.nih.gov/gene/?term=YE1972
YE1973	YE1973	pyrF	pyrF	2153197	2153937	+	orotidine 5'-phosphate decarboxylase	type 1 subfamily%3B involved in last step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate to UMP and carbon dioxide%3B OMP decarboxylase%3B OMPDCase%3B OMPdecase	gene	gene1949	http://www.ncbi.nlm.nih.gov/gene/?term=YE1973
YE1974	YE1974		YE1974	2153934	2154272	+	translation initiation factor Sui1	involved in start site selection during the initiation of translation	gene	gene1950	http://www.ncbi.nlm.nih.gov/gene/?term=YE1974
YE1975	YE1975	osmB	osmB	2154538	2154750	-	lipoprotein		gene	gene1951	http://www.ncbi.nlm.nih.gov/gene/?term=YE1975
YE1976	YE1976	araD	araD	2155187	2155882	+	L-ribulose-5-phosphate 4-epimerase	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source	gene	gene1952	http://www.ncbi.nlm.nih.gov/gene/?term=YE1976
YE1977	YE1977		YE1977	2155909	2156157	-	hypothetical protein		gene	gene1953	http://www.ncbi.nlm.nih.gov/gene/?term=YE1977
YE1978	YE1978		YE1978	2156203	2156949	-	DeoR family transcriptional regulator	Similar to many DeoR-family regulatory proteins including: Escherichia coli glucitol operon repressor SrlR or GutR or b2707 SWALL:SRLR_ECOLI (SWALL:P15082) (257 aa) fasta scores: E(): 1.2e-19%2C 33.2 38d in 256 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi putative regulatory protein%2C DeoR family Stm1704 or Sty1347 SWALL:Q8XEP5 (EMBL:AE008775) (250 aa) fasta scores: E(): 1.7e-54%2C 60.72 38d in 247 aa and Pseudomonas aeruginosa glycerol-3-phosphate regulon repressor GlpR or pa3583 SWALL:GLPR_PSEAE (SWALL:Q51391) (251 aa) fasta scores: E(): 2.1e-17%2C 29.2 38d in 250 aa	gene	gene1954	http://www.ncbi.nlm.nih.gov/gene/?term=YE1978
YE1979	YE1979	mipB	mipB	2157145	2157810	+	fructose-6-phosphate aldolase	similar to transaldolase from Escherichia coli%3B many organisms have multiple copies	gene	gene1955	http://www.ncbi.nlm.nih.gov/gene/?term=YE1979
YE1980	YE1980		YE1980	2158046	2158378	-	hypothetical protein	Similar to Yersinia pestis hypothetical protein Ypo2233 SWALL:Q8ZEE0 (EMBL:AJ414151) (101 aa) fasta scores: E(): 4.2e-29%2C 70.9 38d in 110 aa and to Yersinia pestis KIM hypothetical Y2075 SWALL:AAM85639 (EMBL:AE013810) (109 aa) fasta scores: E(): 4.4e-29%2C 70 id in 110 aa	gene	gene1956	http://www.ncbi.nlm.nih.gov/gene/?term=YE1980
YE1981	YE1981	cstA	cstA	2158371	2160437	-	carbon starvation protein A		gene	gene1957	http://www.ncbi.nlm.nih.gov/gene/?term=YE1981
YE1982	YE1982	rnb	rnb	2160853	2162787	-	exoribonuclease II	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction	gene	gene1958	http://www.ncbi.nlm.nih.gov/gene/?term=YE1982
YE1983	YE1983		YE1983	2162982	2165303	-	oxidoreductase	Similar to many including: Pseudomonas aeruginosa probable oxidoreductase Pa5181 SWALL:Q9HU08 (EMBL:AE004931) (773 aa) fasta scores: E(): 1.9e-184%2C60.13 38d in 760 aa%2C Ralstonia solanacearum putative formate dehydrogenase oxidoreductase protein Rsp1048 or Rs06130 SWALL:Q8XR20 (EMBL:AL646082) (779 aa) fasta scores: E(): 3.5e-164%2C 55.89 38d in 764 aa and to Escherichia coli formate dehydrogenase H FdhF or b4079 SWALL:FDHF_ECOLI (SWALL:P07658) (715 aa) fasta scores: E(): 3.4e-13%2C 25.69 38d in 685 aa	gene	gene1959	http://www.ncbi.nlm.nih.gov/gene/?term=YE1983
YE1984	YE1984		YE1984	2165838	2167073	+	hypothetical protein	no significant database hits. Note the coiled-coil domains between residues 181..192%2C 237..256 and 292..312	gene	gene1960	http://www.ncbi.nlm.nih.gov/gene/?term=YE1984
YE1985	YE1985		YE1985	2167117	2168151	+	hypothetical protein	no significant database hits	gene	gene1961	http://www.ncbi.nlm.nih.gov/gene/?term=YE1985
YE1986	YE1986		YE1986	2168315	2169385	-	hypothetical protein	no significant database hits	gene	gene1962	http://www.ncbi.nlm.nih.gov/gene/?term=YE1986
YE1987	YE1987	nth	nth	2169525	2170166	-	endonuclease III	DNA-(apurinic or apyrimidinic site) lyase%3B has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity%3B removed damaged DNA at cytosines%2C thymines and guanines	gene	gene1963	http://www.ncbi.nlm.nih.gov/gene/?term=YE1987
YE1988	YE1988		YE1988	2170163	2170864	-	electron transport complex protein RsxE	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents%3B similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase	gene	gene1964	http://www.ncbi.nlm.nih.gov/gene/?term=YE1988
YE1989	YE1989		YE1989	2170861	2171490	-	electron transport complex protein RnfG	part of membrane-bound complex hought to be involved in electron transport to nitrogen	gene	gene1965	http://www.ncbi.nlm.nih.gov/gene/?term=YE1989
YE1990	YE1990	rnfD	rnfD	2171500	2172555	-	electron transport complex protein RnfD	RnfD%3B RsxD%3B required for nitrogen fixation in Rhodobacter capsulatus%3B part of a membrane-bound complex thought to be involved in electron transport to nitrogenase%3B in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents	gene	gene1966	http://www.ncbi.nlm.nih.gov/gene/?term=YE1990
YE1991	YE1991		YE1991	2173084	2173971	+	AraC family transcriptional regulator		gene	gene1967	http://www.ncbi.nlm.nih.gov/gene/?term=YE1991
YE1992	YE1992		YE1992	2174009	2176102	-	electron transport complex protein RnfC	part of membrane-bound complex thought to be involved in electron transport to nitrogen	gene	gene1968	http://www.ncbi.nlm.nih.gov/gene/?term=YE1992
YE1993	YE1993		YE1993	2176095	2176718	-	electron transport complex protein RnfB	part of membrane-bound complex thought to be involved in electron transport to nitrogen	gene	gene1969	http://www.ncbi.nlm.nih.gov/gene/?term=YE1993
YE1994	YE1994		YE1994	2176718	2177299	-	Na(+)-translocating NADH-quinone reductase subunit E		gene	gene1970	http://www.ncbi.nlm.nih.gov/gene/?term=YE1994
YE1996	YE1996		YE1996	2177649	2178092	-	hypothetical protein		gene	gene1971	http://www.ncbi.nlm.nih.gov/gene/?term=YE1996
YE1997	YE1997		YE1997	2178160	2179965	-	formate--tetrahydrofolate ligase	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate	gene	gene1972	http://www.ncbi.nlm.nih.gov/gene/?term=YE1997
YE1998	YE1998		YE1998	2180469	2182595	+	RTX family toxin transporter		gene	gene1973	http://www.ncbi.nlm.nih.gov/gene/?term=YE1998
YE1999	YE1999		YE1999	2182592	2183986	+	hemolysin transport protein	Highly similar to many hemolysin transport proteins including: Vibrio cholerae hemolysin secretion protein RtxD protein SWALL:Q9X4W5 (EMBL:AF119150) (467 aa) fasta scores: E(): 1.9e-55%2C 39.77 38d in 450 aa%2C Pasteurella haemolytica leukotoxin secretion protein D LktD SWALL:HLYD_PASHA (SWALL:P16534) (478 aa) fasta scores: E(): 2e-42%2C 34.79 38d in 457 aa and Escherichia coli hemolysin secretion protein D%2C plasmid HlyD SWALL:HLYD_ECOLI (SWALL:P06739) (478 aa) fasta scores: E(): 1.7e-41%2C 36.32 38d in 457 aa	gene	gene1974	http://www.ncbi.nlm.nih.gov/gene/?term=YE1999
YE2000	YE2000		YE2000	2183989	2186121	+	toxin transport protein		gene	gene1975	http://www.ncbi.nlm.nih.gov/gene/?term=YE2000
YE2001	YE2001	araA	araA	2186355	2187857	-	L-arabinose isomerase	catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism	gene	gene1976	http://www.ncbi.nlm.nih.gov/gene/?term=YE2001
YE2002	YE2002	araB	araB	2187915	2189567	-	ribulokinase	catalyzes the phosphorylation of ribulose to ribulose 5-phosphate	gene	gene1977	http://www.ncbi.nlm.nih.gov/gene/?term=YE2002
YE2003	YE2003	araF	araF	2190066	2191049	+	L-arabinose-binding periplasmic protein		gene	gene1978	http://www.ncbi.nlm.nih.gov/gene/?term=YE2003
YE2004	YE2004	araG	araG	2191221	2192699	+	L-arabinose transporter ATP-binding protein	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose	gene	gene1979	http://www.ncbi.nlm.nih.gov/gene/?term=YE2004
YE2005	YE2005	araH	araH	2192867	2193775	+	L-arabinose transporter permease	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose	gene	gene1980	http://www.ncbi.nlm.nih.gov/gene/?term=YE2005
YE2006	YE2006	araC	araC	2193899	2194831	+	DNA-binding transcriptional regulator AraC	positive and negative regulator%3B regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose	gene	gene1981	http://www.ncbi.nlm.nih.gov/gene/?term=YE2006
YE2007	YE2007		YE2007	2194933	2195982	+	oxidoreductase		gene	gene1982	http://www.ncbi.nlm.nih.gov/gene/?term=YE2007
YE2008	YE2008		YE2008	2196154	2197167	+	hypothetical protein		gene	gene1983	http://www.ncbi.nlm.nih.gov/gene/?term=YE2008
YE2009	YE2009	add	add	2197329	2198327	-	adenosine deaminase	catalyzes the formation of inosine from adenosine	gene	gene1984	http://www.ncbi.nlm.nih.gov/gene/?term=YE2009
YE2010	YE2010		YE2010	2198525	2199721	-	aminotransferase		gene	gene1985	http://www.ncbi.nlm.nih.gov/gene/?term=YE2010
YE2011	YE2011	malX	malX	2199896	2201506	-	bifunctional PTS system maltose and glucose-specific transporter subunits IICB	phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%3B catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane%3B component IIB catalyzes the phosphorylation of the sugar molecule%3B IIC forms the translocation channel and contains the substrate specific binding site	gene	gene1986	http://www.ncbi.nlm.nih.gov/gene/?term=YE2011
YE2012	YE2012	malI	malI	2201822	2202853	+	DNA-binding transcriptional repressor MalI	regulates malXY which are involved in maltose-glucose transport	gene	gene1987	http://www.ncbi.nlm.nih.gov/gene/?term=YE2012
YE2013	YE2013		YE2013	2203043	2203402	-	hypothetical protein	no significant database hits	gene	gene1988	http://www.ncbi.nlm.nih.gov/gene/?term=YE2013
YE2014	YE2014		YE2014	2203551	2205125	-	hypothetical protein		gene	gene1989	http://www.ncbi.nlm.nih.gov/gene/?term=YE2014
YE2015	YE2015	manA	manA	2205357	2206532	-	mannose-6-phosphate isomerase		gene	gene1990	http://www.ncbi.nlm.nih.gov/gene/?term=YE2015
YE2016	YE2016	fumC	fumC	2206758	2208152	+	fumarate hydratase	class II family (does not require metal)%3B tetrameric enzyme%3B fumarase C%3B reversibly converts (S)-malate to fumarate and water%3B functions in the TCA cycle	gene	gene1991	http://www.ncbi.nlm.nih.gov/gene/?term=YE2016
YE2017	YE2017		YE2017	2208458	2209177	+	LuxR family transcriptional regulator	Weakly similar to other LuxR-family transcriptional regulators including: Vibrio cholerae Vca1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 2.5e-08%2C24.88 38d in 221 aa and Pseudomonas aeruginosa probable transcriptional regulatorPa1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 3.4e-06%2C25.98 38d in 204 aa	gene	gene1992	http://www.ncbi.nlm.nih.gov/gene/?term=YE2017
YE2018	YE2018	tau	tau	2209263	2210192	-	DNA replication terminus site-binding protein	binds to DNA replication terminator sequences to prevent passage of replication forks	gene	gene1993	http://www.ncbi.nlm.nih.gov/gene/?term=YE2018
YE2019	YE2019	blaA	blaA	2210344	2211228	-	beta-lactamase	Previously sequenced as Yersinia enterocolitica beta-lactamase precursor BlaA SWALL:BLAC_YEREN (SWALL:Q01166) (294 aa) fasta scores: E(): 1.2e-107%2C93.87 38d in 294 aa. Also highly similar to Burkholderia pseudomallei beta-lactamase 1c bla-bps-1C SWALL:Q8VVD0 (EMBL:AF441238) (295 aa) fasta scores: E(): 2.6e-62%2C58.47 38d in 289 aa	gene	gene1994	http://www.ncbi.nlm.nih.gov/gene/?term=YE2019
YE2020	YE2020		YE2020	2211427	2211816	-	hypothetical protein	Weakly similar to Streptomyces coelicolor putative integral membrane protein Sco6327 or sc10h5.03C SWALL:O86495 (EMBL:AL031232) (154 aa) fasta scores: E(): 1.8e-10%2C 36.44 38d in 118 aa	gene	gene1995	http://www.ncbi.nlm.nih.gov/gene/?term=YE2020
YE2021	YE2021		YE2021	2212003	2213295	-	hypothetical protein		gene	gene1996	http://www.ncbi.nlm.nih.gov/gene/?term=YE2021
YE2022	YE2022		YE2022	2213472	2214383	+	LysR family transcriptional regulator		gene	gene1997	http://www.ncbi.nlm.nih.gov/gene/?term=YE2022
YE2023	YE2023	mlc	mlc	2214604	2215821	+	ROK family transcriptional regulatory protein		gene	gene1998	http://www.ncbi.nlm.nih.gov/gene/?term=YE2023
YE2024	YE2024	bioD	bioD	2216044	2216712	+	dithiobiotin synthetase	DTB synthetase%3B dethiobiotin synthase%3B involved in production of dethiobiotin from ATP and 7%2C8-diaminononanoate and carbon dioxide%3B contains magnesium	gene	gene1999	http://www.ncbi.nlm.nih.gov/gene/?term=YE2024
YE2025	YE2025		YE2025	2216733	2218013	-	voltage-gated ClC-type chloride channel ClcB		gene	gene2000	http://www.ncbi.nlm.nih.gov/gene/?term=YE2025
YE2025a	YE2025a		YE2025a	2218087	2218332	-	membrane protein		gene	gene2001	http://www.ncbi.nlm.nih.gov/gene/?term=YE2025a
YE2026	YE2026		YE2026	2218424	2218795	-	hypothetical protein	Highly similar to Yersinia pseudotuberculosis hypothetical 14.2 kDa protein SWALL:Q93AP0 (EMBL:AF418982) (124 aa) fasta scores: E(): 7.5e-41%2C 82.11 38d in 123 aa and to Escherichia coli hypothetical protein YnfB or b1583 SWALL:YNFB_ECOLI (SWALL:P76170) (113 aa) fasta scores: E(): 2.5e-14%2C 43.96 38d in 116 aa	gene	gene2002	http://www.ncbi.nlm.nih.gov/gene/?term=YE2026
YE2027	YE2027		YE2027	2219164	2219490	+	hypothetical protein	Similar to many including: Salmonella typhi hypothetical protein YnfA or sty1558 SWALL:Q8Z6Z2 (EMBL:AL627270) (108 aa) fasta scores: E(): 3.2e-33%2C 80 id in 105 aa%2C Escherichia coli hypothetical protein YnfA or b1582 SWALL:YNFA_ECOLI (SWALL:P76169) (108 aa) fasta scores: E(): 4.3e-33%2C 80 38d in 105 aa and to Escherichia coli%2C and Klebsiella aerogenes quaternary ammonium compound-resistance protein QacE SWALL:QACE_ECOLI (SWALL:Q57225) (110 aa) fasta scores: E(): 9.1%2C 26.47 38d in 102 aa	gene	gene2003	http://www.ncbi.nlm.nih.gov/gene/?term=YE2027
YE2028	YE2028		YE2028	2219521	2220276	-	3-hydroxy acid dehydrogenase	NADP(+)-dependent%3B catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine%3B can also use 3-hydroxybutyrate%2C 3-hydroxy-isobutyrate%2C D-threonine%2C L-allo-threonine%2CD-serine	gene	gene2004	http://www.ncbi.nlm.nih.gov/gene/?term=YE2028
YE2029	YE2029		YE2029	2220356	2221831	-	membrane transport protein	Similar to many membrane transport proteins including: Rhizobium meliloti putative transport transmembrane protein R02571 or Smc02343 SWALL:Q92MP2 (EMBL:AL591791) (479 aa) fasta scores: E(): 3.1e-73%2C41.94 38d in 484 aa and to Brucella melitensis methylenomycin A resistance protein Bmeii0596 SWALL:Q8YCD6 (EMBL:AE009695) (469 aa) fasta scores: E(): 1.4e-68%2C39.13 38d in 460 aa	gene	gene2005	http://www.ncbi.nlm.nih.gov/gene/?term=YE2029
YE2030	YE2030		YE2030	2222032	2222310	-	hypothetical protein	Similar to Escherichia coli hypothetical protein YahO precursor or b0329 SWALL:YAHO_ECOLI (SWALL:P75694) (91 aa) fasta scores: E(): 8.4e-13%2C 53.26 38d in 92 aa and to Yersinia pestis putative exported protein Ypo0130 SWALL:Q8ZJH7 (EMBL:AJ414141) (89 aa) fasta scores: E(): 1.2e-08%2C 47.25 38d in 91 aa	gene	gene2006	http://www.ncbi.nlm.nih.gov/gene/?term=YE2030
YE2032	YE2032		YE2032	2222976	2223332	-	phage/plasmid maintenance toxin/antidote system toxin	Similar to Bacteriophage P1 death on curing protein Doc SWALL:DOC_BPP1 (SWALL:Q06259) (126 aa) fasta scores: E(): 3e-11%2C 40.51 38d in 116 aa and to Salmonella typhimurium Stm3558 SWALL:Q8ZLF1 (EMBL:AE008864) (122 aa) fasta scores: E(): 1.4e-13%2C 44.44 38d in 117 aa	gene	gene2007	http://www.ncbi.nlm.nih.gov/gene/?term=YE2032
YE2033	YE2033		YE2033	2223329	2223547	-	phage/plasmid maintenance toxin/antidote system antidote	Similar to Bacteriophage P1 prevent host death protein Phd SWALL:PHD_BPP1 (SWALL:Q06253) (73 aa) fasta scores: E(): 0.007%2C 47.27 38d in 55 aa and to Salmonella typhimurium hypothetical protein Stm3559 SWALL:YHHV_SALTY (SWALL:P40819) (75 aa) fasta scores: E(): 0.0012%2C 38.35 id in 73 aa	gene	gene2008	http://www.ncbi.nlm.nih.gov/gene/?term=YE2033
YE2034	YE2034		YE2034	2224042	2224752	+	LuxR family transcriptional regulator	Weakly similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 6.2e-09%2C24.88 38d in 209 aa and to Vibrio cholerae transcriptional regulator%2C LuxR family Vca1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 3.7e-06%2C21.87 38d in 224 aa	gene	gene2009	http://www.ncbi.nlm.nih.gov/gene/?term=YE2034
YE2035	YE2035		YE2035	2224870	2226117	-	membrane transport protein	Similar to many putative mebrane proteins Streptomyces coelicolor putative integral membrane efflux protein Sco6805 or Sc1a2.14 SWALL:Q9L227 (EMBL:AL138598) (434 aa) fasta scores: E(): 6.1e-33%2C 32.56 38d in 390 aa and to Mycobacterium smegmatis tetracycline-resistance determinant TetV SWALL:O31137 (EMBL:AF030344) (419 aa) fasta scores: E(): 1.1e-23%2C 27.27 38d in 396 aa	gene	gene2010	http://www.ncbi.nlm.nih.gov/gene/?term=YE2035
YE2036	YE2036		YE2036	2226606	2227778	+	hypothetical protein		gene	gene2011	http://www.ncbi.nlm.nih.gov/gene/?term=YE2036
YE2037	YE2037		YE2037	2227833	2229179	-	hypothetical protein		gene	gene2012	http://www.ncbi.nlm.nih.gov/gene/?term=YE2037
YE2038	YE2038	yghU	yghU	2229341	2230192	+	glutathione S-transferase YghU	YghU%3B B2989%3B one of eight putative glutathione transferase proteins from E. coli	gene	gene2013	http://www.ncbi.nlm.nih.gov/gene/?term=YE2038
YE2039	YE2039		YE2039	2230375	2231484	-	hypothetical protein	Similar to several proteins of undefined function which lie within arginine/ornithine transport operons%2Cincluding: Pseudomonas aeruginosa arginine/ornithine transport operon protein Aot or AotO or Pa0891 SWALL:O50184 (EMBL:AF012537) (370 aa) fasta scores: E(): 1.5e-51%2C 41.41 38d in 367 aa and Brucella melitensis arginine/ornithine transport operon protein Aot or Bmei1635 SWALL:Q8YF87 (EMBL:AE009599) (353 aa) fasta scores: E(): 1.1e-07%2C 32.1 38d in 352 aa	gene	gene2014	http://www.ncbi.nlm.nih.gov/gene/?term=YE2039
YE2040	YE2040		YE2040	2231499	2231954	+	leucine-responsive regulatory protein	Similar to many leucine-responsive regulatory proteins including: Escherichia coli%2C Escherichia coli O157:H7%2C and Enterobacter aerogenes Lrp or AlsB or LivR or Ihb or oppi or b0889 or z1234 or ecs0974 SWALL:LRP_ECOLI (SWALL:P19494) (163 aa) fasta scores: E(): 2.5e-13%2C 42.53 id in 134 aa and Rhizobium loti transcriptional regulator Mll7129 SWALL:Q987B0 (EMBL:AP003011) (163 aa) fasta scores: E(): 3.2e-15%2C 35.17 38d in 145 aa	gene	gene2015	http://www.ncbi.nlm.nih.gov/gene/?term=YE2040
YE2041	YE2041		YE2041	2231975	2232697	-			gene	gene2016	http://www.ncbi.nlm.nih.gov/gene/?term=YE2041
YE2043	YE2043		YE2043	2232697	2233389	-	amino acid ABC transporter permease	Similar to many amino acid transporters including: Escherichia coli histidine transport system permease protein HisQ or b2308 SWALL:HISQ_ECOLI (SWALL:P52094) (228 aa) fasta scores: E(): 4.5e-34%2C 42.92 38d in 226 aa and to Pseudomonas aeruginosa arginine/ornithine transport protein AotQ or pa0889 SWALL:Q9I557 (EMBL:AE004523) (229 aa) fasta scores: E(): 1.8e-37%2C 48.45 38d in 227 aa	gene	gene2017	http://www.ncbi.nlm.nih.gov/gene/?term=YE2043
YE2044	YE2044		YE2044	2233469	2234242	-	amino acid-binding periplasmic protein	Similar to many amino acid transporters including: Salmonella typhimurium lysine-arginine-ornithine-binding periplasmic protein precursor ArgT or Stm2355 SWALL:ARGT_SALTY (SWALL:P02911) (260 aa) fasta scores: E(): 1.8e-41%2C 44.61 38d in 260 aa and to Escherichia coli lysine-arginine-ornithine-binding periplasmic protein precursor ArgT or b2310 SWALL:ARGT_ECOLI (SWALL:P09551) (260 aa) fasta scores: E(): 4.8e-41%2C 45 38d in 260 aa	gene	gene2018	http://www.ncbi.nlm.nih.gov/gene/?term=YE2044
YE2045	YE2045		YE2045	2234269	2235027	-	hydrolase	Similar to Streptomyces coelicolor ng%2Cng-dimethylarginine dimethylaminohydrolase DdaH or sco6718 or sc5f2a.01C SWALL:DDAH_STRCO (SWALL:Q9X7M4) (258 aa) fasta scores: E(): 1.3e-15%2C 31.76 38d in 255 aa and to Homo sapiens ng%2Cng-dimethylarginine dimethylaminohydrolase 1 DdaH1 SWALL:DDH1_HUMAN (SWALL:O94760) (284 aa) fasta scores: E(): 3.3e-15%2C 33.83 38d in 266 aa	gene	gene2019	http://www.ncbi.nlm.nih.gov/gene/?term=YE2045
YE2047	YE2047		YE2047	2235413	2236402	-	hydrolase	Weakly similar to many including: Agrobacterium tumefaciens amidohydrolase Atu5536 or agr_pat_799 SWALL:Q8UJE1 (EMBL:AE008973) (600 aa) fasta scores: E(): 6.8e-11%2C 26.92 38d in 312 aa and to Pyrococcus furiosus hypothetical protein Pf1017 SWALL:AAL81141 (EMBL:AE010213) (262 aa) fasta scores: E(): 9.4e-11%2C 26.15 38d in 302 aa	gene	gene2020	http://www.ncbi.nlm.nih.gov/gene/?term=YE2047
YE2048	YE2048		YE2048	2236516	2237382	+	LysR family transcriptional regulator	Similar to many LysR-family transcriptional regulatory proteins including: Alcaligenes eutrophus transcriptional regulatory protein TdfR/TfdS(tfds or tfdo) SWALL:TFDR_ALCEU (SWALL:P10086) (295 aa) fasta scores: E(): 5.7e-16%2C 29.78 38d in 282 aa and to Rhizobium meliloti putative transcriptional regulator protein Rb0012 or Smb20009 SWALL:Q92XF0 (EMBL:AL603642) (309 aa) fasta scores: E(): 7.6e-18%2C 31.06 38d in 264 aa	gene	gene2021	http://www.ncbi.nlm.nih.gov/gene/?term=YE2048
YE2049	YE2049		YE2049	2237459	2240038	-	autotransporter protein	Weakly similar to many autotransporter proteins including: Yersinia pestis YapD protein SWALL:Q9F289 (EMBL:AJ277627) (1457 aa) fasta scores: E(): 2.6e-42%2C35.07 38d in 844 aa and to Bordetella pertussis pertactin-family protein BapA protein SWALL:Q9F4B4 (EMBL:AJ277632) (903 aa) fasta scores: E(): 5.4e-28%2C27.35 38d in 848 aa	gene	gene2022	http://www.ncbi.nlm.nih.gov/gene/?term=YE2049
YE2050	YE2050		YE2050	2240179	2240892	-	LuxR family transcriptional regulator	Weakly similar in parts to Pseudomonas aeruginosa probable two-component response regulator Pa3948 SWALL:Q9HX68 (EMBL:AE004813) (209 aa) fasta scores: E(): 0.00023%2C 23.97 38d in 171 aa and Staphylococcus aureus regulatory protein Sa1666 protein or sa1666 SWALL:Q99T30 (EMBL:AP003363) (207 aa) fasta scores: E(): 0.00055%2C25.77 38d in 194 aa	gene	gene2023	http://www.ncbi.nlm.nih.gov/gene/?term=YE2050
YE2051	YE2051		YE2051	2241111	2242058	+	LysR family transcriptional regulator	Similar to many putative regulatory proteins including: Streptomyces coelicolor putative LysR-family transcriptional regulatory protein Sco7438 or Sc6d11.34 SWALL:Q9L122 (EMBL:AL158061) (311 aa) fasta scores: E(): 4.3e-14%2C 27.77 38d in 306 aa and Escherichia coli hypothetical transcriptional regulator YbdO or b0603 SWALL:YBDO_ECOLI (SWALL:P77746) (300 aa) fasta scores: E(): 3e-11%2C 25.34 38d in 292 aa	gene	gene2024	http://www.ncbi.nlm.nih.gov/gene/?term=YE2051
YE2052	YE2052	amn	amn	2242061	2243521	-	AMP nucleosidase	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile	gene	gene2025	http://www.ncbi.nlm.nih.gov/gene/?term=YE2052
YE2053	YE2053		YE2053	2243670	2244665	+	transcriptional regulatory protein	Similar to many regulatory proteins%2C including: Bacillus halodurans ribose operon repressor RbsR or Bh3727 SWALL:RBSR_BACHD (SWALL:Q9K6K2) (331 aa) fasta scores: E(): 2.9e-20%2C 30.67 38d in 326 aa and to Rhizobium meliloti putative transcriptional regulator protein Rb0154 or Smb20154 SWALL:Q92X08 (EMBL:AL603642) (328 aa) fasta scores: E(): 5.8e-34%2C 38.18 38d in 330 aa	gene	gene2026	http://www.ncbi.nlm.nih.gov/gene/?term=YE2053
YE2054	YE2054		YE2054	2244805	2245617	+	inositol-1-monophosphatase	Similar to many including: Synechocystis sp. inositol-1-monophosphatase SuhB or Sll1383 SWALL:SUHB_SYNY3 (SWALL:P74158) (287 aa) fasta scores: E(): 9.5e-26%2C 36.5 38d in 263 aa%2C Brucella melitensis myo-inositol-1 BmeII0568 SWALL:Q8YCG2 (EMBL:AE009693) (266 aa) fasta scores: E(): 2.1e-45%2C 47.89 38d in 261 aa and to Rhizobium meliloti inositol-1-monophosphatase SuhB or R02778 or smc03994 SWALL:SUHB_RHIME (SWALL:Q92M71) (266 aa) fasta scores: E(): 6e-25%2C 37.98 38d in 258 aa	gene	gene2027	http://www.ncbi.nlm.nih.gov/gene/?term=YE2054
YE2055	YE2055		YE2055	2245759	2247165	+	inner-membrane regulatory protein	Similar to many putative regulatory proteins including: Escherichia coli regulatory protein UhpC or b3667 SWALL:UHPC_ECOLI (SWALL:P09836) (439 aa) fasta scores: E(): 7.1e-32%2C 27.88 38d in 416 aa%2C Vibrio cholerae regulatory protein UhpC%2C putative Vca0707 SWALL:Q9KLN6 (EMBL:AE004400) (459 aa) fasta scores: E(): 5.2e-59%2C38.53 38d in 436 aa and to Salmonella typhi regulatory protein Sty3994 SWALL:Q8Z2K5 (EMBL:AL627280) (442 aa) fasta scores: E(): 8.5e-35%2C 29.58 38d in 453 aa	gene	gene2028	http://www.ncbi.nlm.nih.gov/gene/?term=YE2055
YE2057	YE2057		YE2057	2247673	2248977	+	virulence factor		gene	gene2029	http://www.ncbi.nlm.nih.gov/gene/?term=YE2057
YE2058	YE2058		YE2058	2248982	2252017	+	virulence factor		gene	gene2030	http://www.ncbi.nlm.nih.gov/gene/?term=YE2058
YE2059	YE2059		YE2059	2252014	2254440	+	virulence factor		gene	gene2031	http://www.ncbi.nlm.nih.gov/gene/?term=YE2059
YE2060	YE2060	ilvB	ilvB	2254911	2256593	+	acetolactate synthase catalytic subunit		gene	gene2032	http://www.ncbi.nlm.nih.gov/gene/?term=YE2060
YE2061	YE2061	ilvN	ilvN	2256634	2256900	+	acetolactate synthase 1 regulatory subunit	with IlvB catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase small subunit	gene	gene2033	http://www.ncbi.nlm.nih.gov/gene/?term=YE2061
YE2062	YE2062		YE2062	2257016	2257690	-	nucleotidase	manganese-dependent 5'-nucleotidase%3B specific for 5'-UMP%2C 5'-dUMP%2C and 5'-dTMP%3B member of haloacid dehalogenase (HAD)-like hydrolase superfamily	gene	gene2034	http://www.ncbi.nlm.nih.gov/gene/?term=YE2062
YE2063	YE2063		YE2063	2257783	2260158	-	hypothetical protein	Similar over the entire range to Yersinia pestis KIM hypothetical Y2129 SWALL:AAM85691 (EMBL:AE013816) (798 aa) fasta scores: E(): 0%2C 72.3 38d in 798 aa. The N-terminus of the predicted product of this CDS is similar to Yersinia pestis putative membrane protein Ypo2297 SWALL:Q8ZE85 (EMBL:AJ414151) (336 aa) fasta scores: E(): 3.8e-90%2C 73 38d in 326 aa and in the C-terminus to Yersinia pestis hypothetical protein Ypo2296 SWALL:Q8ZE86 (EMBL:AJ414151) (461 aa) fasta scores: E(): 8.5e-131%2C71.89 38d in 459 aa. This is likely to indicate that Ypo2297 and Ypo2296 are parts of the same pseudogene in Y. pestis CO92.	gene	gene2035	http://www.ncbi.nlm.nih.gov/gene/?term=YE2063
YE2064	YE2064		YE2064	2260560	2261339	+	hypothetical protein	Weakly similar to Streptomyces griseus A-factor receptor protein ArpA SWALL:Q54223 (EMBL:X79605) (250 aa) fasta scores: E(): 0.0004%2C 22.91 38d in 240 aa	gene	gene2036	http://www.ncbi.nlm.nih.gov/gene/?term=YE2064
YE2065	YE2065		YE2065	2261532	2262545	-	hypothetical protein	Similar to several proteins of unknown function including: Salmonella typhimurium putative cytoplasmic protein Stm3791 SWALL:Q8ZL16 (EMBL:AE008876) (337 aa) fasta scores: E(): 1.4e-94%2C 65.28 38d in 337 aa and to Salmonella typhi hypothetical protein Sty3991 SWALL:Q8Z2K8 (EMBL:AL627280) (337 aa) fasta scores: E(): 3.7e-93%2C64.68 38d in 337 aa	gene	gene2037	http://www.ncbi.nlm.nih.gov/gene/?term=YE2065
YE2066	YE2066	fucP	fucP	2262567	2263898	-	L-fucose permease	Similar to Escherichia coli L-fucose permease FucP or b2801 SWALL:FUCP_ECOLI (SWALL:P11551) (438 aa) fasta scores: E(): 3.1e-51%2C 35.66 38d in 429 aa and to Salmonella typhimurium%2C and Salmonella typhi putative L-fucose permease Stm3792 or Sty3990 SWALL:Q8XEV7 (EMBL:AE008876) (438 aa) fasta scores: E(): 2.4e-128%2C76.6 38d in 436 aa	gene	gene2038	http://www.ncbi.nlm.nih.gov/gene/?term=YE2066
YE2067	YE2067		YE2067	2263900	2264829	-	carbohydrate kinase	Similar to Escherichia coli%2C and Escherichia coli O157:H7 ribokinase RbsK or b3752 or z5253 or ecs4694 SWALL:RBSK_ECOLI (SWALL:P05054) (309 aa) fasta scores: E(): 9.7e-32%2C 38.94 38d in 303 aa and to Salmonella typhimurium%2C and Salmonella typhi putative sugar kinase%2Cribokinase family Stm3793 or sty3989 SWALL:Q8XGW5 (EMBL:AE008876) (306 aa) fasta scores: E(): 5.7e-77%2C65.56 38d in 302 aa	gene	gene2039	http://www.ncbi.nlm.nih.gov/gene/?term=YE2067
YE2068	YE2068	phoA	phoA	2265109	2266518	-	alkaline phosphatase		gene	gene2040	http://www.ncbi.nlm.nih.gov/gene/?term=YE2068
YE2069	YE2069		YE2069	2266718	2267458	-	short chain dehydrogenease	Similar to many short chain dehydrogeneases including: Bacillus subtilis 3-oxoacyl-[acyl-carrier protein] reductase FabG SWALL:FABG_BACSU (SWALL:P51831) (246 aa) fasta scores: E(): 9.1e-26%2C 38.68 38d in 243 aa and Rhizobium meliloti putative short chain dehydrogenasereductase protein Rb0475 or Smb20493 SWALL:Q92W70 (EMBL:AL603643) (244 aa) fasta scores: E(): 3.3e-57%2C 69.58 38d in 240 aa	gene	gene2041	http://www.ncbi.nlm.nih.gov/gene/?term=YE2069
YE2070	YE2070	gyrI	gyrI	2267674	2268147	-	DNA gyrase inhibitor	Similar to Escherichia coli DNA gyrase inhibitory protein GyrI or SbmC or b2009 SWALL:GYRI_ECOLI (SWALL:P33012) (157 aa) fasta scores: E(): 1.1e-18%2C 37.66 id in 154 aa and to Salmonella typhimurium%2C and Salmonella typhi DNA gyrase inhibitory protein homolog GyrI or SbmC or stm2272 or sty2266 SWALL:GYRI_SALTY (SWALL:P41781) (155 aa) fasta scores: E(): 4.2e-18%2C 34.83 38d in 155 aa	gene	gene2042	http://www.ncbi.nlm.nih.gov/gene/?term=YE2070
YE2071	YE2071		YE2071	2268244	2268762	-	hypothetical protein	Similar to many proteins of undefined function including: Rhizobium meliloti hypothetical protein R00856 or Smc00850 SWALL:Q92RL1 (EMBL:AL591785) (172 aa) fasta scores: E(): 7e-31%2C 55.26 38d in 152 aa and to Ralstonia solanacearum hypothetical protein Rsc1374 or Rs04657 SWALL:Q8XZM1 (EMBL:AL646064) (173 aa) fasta scores: E(): 6.6e-30%2C 54.77 38d in 157 aa	gene	gene2043	http://www.ncbi.nlm.nih.gov/gene/?term=YE2071
YE2073	YE2073		YE2073	2269076	2269891	-	hypothetical protein	Similar to many proteins of undefined function including: Rhizobium meliloti hypothetical protein R02581 or Smc02354 SWALL:Q92MN2 (EMBL:AL591791) (271 aa) fasta scores: E(): 9.9e-33%2C 39.91 38d in 243 aa and to Agrobacterium tumefaciens hypothetical protein atu2144 or agr_c_3887 SWALL:Q8UDI1 (EMBL:AE009164) (257 aa) fasta scores: E(): 2.9e-25%2C 36.99 38d in 246 aa	gene	gene2044	http://www.ncbi.nlm.nih.gov/gene/?term=YE2073
YE2074	YE2074	ogt	ogt	2270141	2270659	+	methylated-DNA--protein-cysteine methyltransferase		gene	gene2045	http://www.ncbi.nlm.nih.gov/gene/?term=YE2074
YE2075	YE2075	fnr	fnr	2270732	2271487	+	fumarate/nitrate reduction transcriptional regulator	Global transcription factor that controls the expression of over 100 target genes in response to anoxia	gene	gene2046	http://www.ncbi.nlm.nih.gov/gene/?term=YE2075
YE2076	YE2076		YE2076	2271724	2272680	+	universal stress protein UspE	with UspC and UspD is involved in resistance to UV irradiation	gene	gene2047	http://www.ncbi.nlm.nih.gov/gene/?term=YE2076
YE2077	YE2077	pntB	pntB	2272919	2274310	-	pyridine nucleotide transhydrogenase	catalyzes reversible transfer of hydride ion equivalent between NAD and NADP%3B membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane%3B forms a tetramer composed of two alpha and 2 beta subunits%3B AB-stereospecific enzyme	gene	gene2048	http://www.ncbi.nlm.nih.gov/gene/?term=YE2077
YE2078	YE2078	pntA	pntA	2274431	2275957	-	NAD(P) transhydrogenase subunit alpha	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane%3B involved in catalyzing transfer of hydride ion equivalents between NAD and NADP%3B stereospecific (AB-specific)%3B functions as a proton pump by translocating protons from cytoplasm to periplasm	gene	gene2049	http://www.ncbi.nlm.nih.gov/gene/?term=YE2078
YE2080	YE2080		YE2080	2276490	2277443	+	hypothetical protein		gene	gene2050	http://www.ncbi.nlm.nih.gov/gene/?term=YE2080
YE2081	YE2081		YE2081	2277894	2279285	+	amino acid antiporter		gene	gene2051	http://www.ncbi.nlm.nih.gov/gene/?term=YE2081
YE2082	YE2082		YE2082	2279356	2279772	-	hypothetical protein		gene	gene2052	http://www.ncbi.nlm.nih.gov/gene/?term=YE2082
YE2083	YE2083	rstA	rstA	2280015	2280743	+	DNA-binding transcriptional regulator RstA	response regulator in two-component regulatory system with RstB	gene	gene2053	http://www.ncbi.nlm.nih.gov/gene/?term=YE2083
YE2084	YE2084	rstB	rstB	2280770	2282047	+	sensor protein RstB		gene	gene2054	http://www.ncbi.nlm.nih.gov/gene/?term=YE2084
YE2085	YE2085		YE2085	2282083	2283576	+	carboxypeptidase		gene	gene2055	http://www.ncbi.nlm.nih.gov/gene/?term=YE2085
YE2086	YE2086	asr	asr	2283966	2284241	+	acid shock protein		gene	gene2056	http://www.ncbi.nlm.nih.gov/gene/?term=YE2086
YE2087	YE2087		YE2087	2284642	2285484	+	protease	Similar to many including: Yersinia pestis putative peptidase Ypo2319 SWALL:Q8ZE64 (EMBL:AJ414152) (278 aa) fasta scores: E(): 5.9e-88%2C 78.72 38d in 282 aa and to Salmonella typhimurium%2C and Salmonella typhi putative protease Stm1484 or Sty1583 SWALL:Q8XG80 (EMBL:AE008764) (273 aa) fasta scores: E(): 3.4e-62%2C 58.58 38d in 268 aa	gene	gene2057	http://www.ncbi.nlm.nih.gov/gene/?term=YE2087
YE2088	YE2088		YE2088	2285540	2285863	-	DNA-binding phage-like protein		gene	gene2058	http://www.ncbi.nlm.nih.gov/gene/?term=YE2088
YE2089	YE2089		YE2089	2285860	2286174	-	hypothetical protein		gene	gene2059	http://www.ncbi.nlm.nih.gov/gene/?term=YE2089
YE2090	YE2090	hrpA	hrpA	2286528	2290370	-	ATP-dependent RNA helicase HrpA	involved in the post-transcriptional processing of the daa operon mRNA%2C which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain	gene	gene2060	http://www.ncbi.nlm.nih.gov/gene/?term=YE2090
YE2091	YE2091		YE2091	2290584	2291825	-	hypothetical protein	Similar in parts to Escherichia coli cytotoxic necrotizing factor type 2 Cnf2 SWALL:Q47107 (EMBL:U01097) (1014 aa) fasta scores: E(): 5.8e-10%2C 24.55 38d in 281 aa and to Yersinia pseudotuberculosis cytotoxic necrotizing factor Cnf SWALL:Q9EYH7 (EMBL:AF324349) (1014 aa) fasta scores: E(): 3.5e-08%2C 24.9 38d in 273 aa	gene	gene2061	http://www.ncbi.nlm.nih.gov/gene/?term=YE2091
YE2092	YE2092	acpD	acpD	2292282	2292887	+	azoreductase	FMN-dependent%3B requires NADH%3B catalyzes the cleavage of azo bond in aromatic azo compounds	gene	gene2062	http://www.ncbi.nlm.nih.gov/gene/?term=YE2092
YE2094	YE2094		YE2094	2293157	2293387	-			gene	gene2063	http://www.ncbi.nlm.nih.gov/gene/?term=YE2094
YE2095	YE2095		YE2095	2293453	2293824	-	hypothetical protein		gene	gene2064	http://www.ncbi.nlm.nih.gov/gene/?term=YE2095
YE2096	YE2096		YE2096	2293834	2294019	-	lipoprotein		gene	gene2065	http://www.ncbi.nlm.nih.gov/gene/?term=YE2096
YE2097	YE2097		YE2097	2294025	2296658	-	hypothetical protein	Similar to many proteins of undefined function including: Escherichia coli hypothetical protein YdbH or b1381 SWALL:YDBH_ECOLI (SWALL:P52645) (879 aa) fasta scores: E(): 4.9e-167%2C 46.46 38d in 876 aa and to Yersinia pestis putative membrane protein Ypo2328 SWALL:Q8ZE56 (EMBL:AJ414152) (898 aa) fasta scores: E(): 0%2C 80.11 38d in 875 aa	gene	gene2066	http://www.ncbi.nlm.nih.gov/gene/?term=YE2097
YE2098	YE2098	hslI	hslI	2296932	2297924	+	D-lactate dehydrogenase		gene	gene2067	http://www.ncbi.nlm.nih.gov/gene/?term=YE2098
YE2099	YE2099		YE2099	2298056	2298373	-	lipoprotein	Similar to Yersinia pestis putative lipoprotein Ypo2331 SWALL:Q8ZE53 (EMBL:AJ414152) (113 aa) fasta scores: E(): 2.7e-21%2C 58.4 38d in 113 aa and to Escherichia coli hypothetical protein YdbJ precursor ydbj or b1378.1 SWALL:YDBJ_ECOLI (SWALL:P52646) (88 aa) fasta scores: E(): 1.6e-09%2C 40.95 38d in 105 aa	gene	gene2068	http://www.ncbi.nlm.nih.gov/gene/?term=YE2099
YE2100	YE2100		YE2100	2298612	2299271	+	Mg(2+) transport ATPase	inner membrane protein involved in cell density-dependent acid resistance%3B part of the acid fitness island (AFI) of E. coli	gene	gene2069	http://www.ncbi.nlm.nih.gov/gene/?term=YE2100
YE2101	YE2101	qacE	qacE	2299380	2299712	-	quaternary ammonium compound-resistance protein		gene	gene2070	http://www.ncbi.nlm.nih.gov/gene/?term=YE2101
YE2102	YE2102	nifJ	nifJ	2300090	2303623	+	pyruvate-flavodoxin oxidoreductase		gene	gene2071	http://www.ncbi.nlm.nih.gov/gene/?term=YE2102
YE2103	YE2103	arbB	arbB	2303703	2305058	-	beta-glucosidase	Similar to Bacillus subtilis beta-glucosidase BglH or n17D SWALL:BGL1_BACSU (SWALL:P40740) (469 aa) fasta scores: E(): 3.5e-110%2C 63.01 38d in 411 aa and to Leishmania infantum 6-phospho-beta-glucosidase-like protein ArbB SWALL:Q9GPU3 (EMBL:AF309637) (467 aa) fasta scores: E(): 5.2e-98%2C 57.77 38d in 431 aa. Note the differing N-termini of the Bacillus and Yersinia predicted products.	gene	gene2072	http://www.ncbi.nlm.nih.gov/gene/?term=YE2103
YE2104	YE2104	arbF	arbF	2305196	2307097	-	PTS system beta-glucoside-specific transporter subunit IIABC	Similar to Erwinia chrysanthemi PTS system%2Cbeta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 6.4e-81%2C 37.44 38d in 633 aa and to Escherichia coli pts system%2C beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 1.4e-79%2C 39.3 38d in 636 aa	gene	gene2073	http://www.ncbi.nlm.nih.gov/gene/?term=YE2104
YE2105	YE2105	arbG	arbG	2307182	2308015	-	beta-glucoside operon antiterminator	Similar to Erwinia chrysanthemi beta-glucoside operon antiterminator ArbG SWALL:ARBG_ERWCH (SWALL:P26211) (283 aa) fasta scores: E(): 1.9e-47%2C 49.27 38d in 274 aa and to Bacillus subtilis transcription antiterminator LicT or n15A SWALL:LICT_BACSU (SWALL:P39805) (277 aa) fasta scores: E(): 6.7e-49%2C 49.08 38d in 273 aa	gene	gene2074	http://www.ncbi.nlm.nih.gov/gene/?term=YE2105
YE2106	YE2106		YE2106	2308324	2309265	+	C32 tRNA thiolase	TtcA%3B YdaO%3B catalyzes the thiolation of cytosine 32 in specific tRNAs	gene	gene2075	http://www.ncbi.nlm.nih.gov/gene/?term=YE2106
YE2107	YE2107	zntB	zntB	2309579	2310562	-	zinc transporter		gene	gene2076	http://www.ncbi.nlm.nih.gov/gene/?term=YE2107
YE2110	YE2110	mppA	mppA	2311500	2313116	-	periplasmic murein peptide-binding protein		gene	gene2077	http://www.ncbi.nlm.nih.gov/gene/?term=YE2110
YE2111	YE2111		YE2111	2313263	2313970	+	murein peptide amidase A		gene	gene2078	http://www.ncbi.nlm.nih.gov/gene/?term=YE2111
YE2112	YE2112		YE2112	2313967	2314938	-	mandelate racemase/muconate lactonizing protein		gene	gene2079	http://www.ncbi.nlm.nih.gov/gene/?term=YE2112
YE2113	YE2113	tpx	tpx	2315091	2315594	+	thiol peroxidase	antioxidant activity%3B thioredoxin-dependent thiol peroxidase%3B forms homodimers in solution%3B shows substrate specificity to alkyl hydroperoxides%3B periplasmic protein	gene	gene2080	http://www.ncbi.nlm.nih.gov/gene/?term=YE2113
YE2114	YE2114	tyrR	tyrR	2315717	2317294	-	DNA-binding transcriptional regulator TyrR	regulates genes involved in the biosynthesis and transport of aromatic amino acids	gene	gene2081	http://www.ncbi.nlm.nih.gov/gene/?term=YE2114
YE2115	YE2115		YE2115	2317614	2318060	+	hypothetical protein		gene	gene2082	http://www.ncbi.nlm.nih.gov/gene/?term=YE2115
YE2116	YE2116		YE2116	2318124	2318582	+	hypothetical protein		gene	gene2083	http://www.ncbi.nlm.nih.gov/gene/?term=YE2116
YE2117	YE2117		YE2117	2318585	2319649	-	hypothetical protein		gene	gene2084	http://www.ncbi.nlm.nih.gov/gene/?term=YE2117
YE2118	YE2118		YE2118	2319646	2321043	-	hypothetical protein		gene	gene2085	http://www.ncbi.nlm.nih.gov/gene/?term=YE2118
YE2119	YE2119	pspC	pspC	2321309	2321659	-	DNA-binding transcriptional activator PspC	with PsbB forms toxin/antitoxin pair%3B activates the psp operon in response to phage infection%2C exposure to ethanol or osmotic shock	gene	gene2086	http://www.ncbi.nlm.nih.gov/gene/?term=YE2119
YE2120	YE2120	pspB	pspB	2321728	2321955	-	phage shock protein B	acts together with PspC to induce psp operon during infection with phage%2C exposure to ethanol or osmotic shock%3B forms a complex with PspA and C%3B PspC is required for PspAB binding	gene	gene2087	http://www.ncbi.nlm.nih.gov/gene/?term=YE2120
YE2121	YE2121	pspA	pspA	2322117	2322782	-	phage shock protein PspA	involved in maintaining membrane potential under membrane stress conditions%3B also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF	gene	gene2088	http://www.ncbi.nlm.nih.gov/gene/?term=YE2121
YE2122	YE2122	pspF	pspF	2322972	2323991	+	phage shock protein operon transcriptional activator	transcriptional activator for pspABCE which are induced in response to phage proteins%2C membrane altering stresses%2C and impaired proton expor	gene	gene2089	http://www.ncbi.nlm.nih.gov/gene/?term=YE2122
YE2123	YE2123	ytxB	ytxB	2324044	2324400	-	lipoprotein	Previously sequenced as: Yersinia enterocolitica YtxB precursor SWALL:Q93M75 (EMBL:AY008264) (118 aa) fasta scores: E(): 1e-47%2C 100 38d in 118 aa. This CDS is possibly an enterotoxin subunit.	gene	gene2090	http://www.ncbi.nlm.nih.gov/gene/?term=YE2123
YE2124	YE2124	ytxA	ytxA	2324449	2325276	-	enterotoxin subunit	Previously sequenced as: Yersinia enterocolitica YtxA precursor SWALL:Q93M76 (EMBL:AY008264) (275 aa) fasta scores: E(): 8.6e-116%2C 100 38d in 275 aa. Also weakly similar to Bordetella pertussis pertussis toxin subunit 1 precursor PtxA SWALL:TOX1_BORPE (SWALL:P04977) (269 aa) fasta scores: E(): 6.5e-14%2C 33.48 38d in 221 aa	gene	gene2091	http://www.ncbi.nlm.nih.gov/gene/?term=YE2124
YE2125	YE2125	sapA	sapA	2326034	2327707	+	peptide transport periplasmic protein		gene	gene2093	http://www.ncbi.nlm.nih.gov/gene/?term=YE2125
YE2126	YE2126	sapB	sapB	2327704	2328669	+	peptide transporter permease		gene	gene2094	http://www.ncbi.nlm.nih.gov/gene/?term=YE2126
YE2127	YE2127	sapC	sapC	2328656	2329546	+	peptide transporter permease		gene	gene2095	http://www.ncbi.nlm.nih.gov/gene/?term=YE2127
YE2128	YE2128	sapD	sapD	2329546	2330538	+	peptide transporter ATP-binding protein		gene	gene2096	http://www.ncbi.nlm.nih.gov/gene/?term=YE2128
YE2129	YE2129	sapF	sapF	2330538	2331353	+	peptide transporter ATP-binding protein		gene	gene2097	http://www.ncbi.nlm.nih.gov/gene/?term=YE2129
YE2131	YE2131		YE2131	2331753	2332964	+	hypothetical protein		gene	gene2098	http://www.ncbi.nlm.nih.gov/gene/?term=YE2131
YE2132	YE2132		YE2132	2333007	2333891	-	LysR family transcriptional regulator	Similar to Erwinia carotovora hydrogen peroxide-inducible genes activator OxyR SWALL:OXYR_ERWCA (SWALL:P71318) (302 aa) fasta scores: E(): 7.9e-13%2C 28.13 id in 295 aa and to Pseudomonas aeruginosa probable transcriptional regulator Pa5179 SWALL:Q9HU10 (EMBL:AE004931) (293 aa) fasta scores: E(): 4.4e-37%2C39.59 38d in 293 aa	gene	gene2099	http://www.ncbi.nlm.nih.gov/gene/?term=YE2132
YE2133	YE2133	tppB	tppB	2334496	2335962	+	tripeptide transporter permease	mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium%3B member of proton-dependent oligopeptide transport (POT) system family%3B in Escherichia coli this gene is regulated by OmpR although not via osmoregulation	gene	gene2100	http://www.ncbi.nlm.nih.gov/gene/?term=YE2133
YE2134	YE2134		YE2134	2336211	2336564	-	hypothetical protein	Similar to many proteins of unproven function inculding: Rhizobium meliloti hypothetical protein R01936 or Smc04266 SWALL:Q92P57 (EMBL:AL591789) (117 aa) fasta scores: E(): 3.3e-31%2C 69.82 38d in 116 aa%2C Agrobacterium tumefaciens glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein Atu1532 or agr_c_2825 SWALL:Q8UF67 (EMBL:AE009112) (119 aa) fasta scores: E(): 1.5e-29%2C 67.25 38d in 113 aa and to Xanthomonas campestris hypothetical protein Xcc0234 SWALL:Q8PDV1 (EMBL:AE012119) (113 aa) fasta scores: E(): 3.8e-25%2C 61.46 38d in 109 aa	gene	gene2101	http://www.ncbi.nlm.nih.gov/gene/?term=YE2134
YE2135	YE2135		YE2135	2336785	2337375	+	hypothetical protein		gene	gene2102	http://www.ncbi.nlm.nih.gov/gene/?term=YE2135
YE2136	YE2136		YE2136	2337561	2337824	+	hypothetical protein		gene	gene2103	http://www.ncbi.nlm.nih.gov/gene/?term=YE2136
YE2137	YE2137	gst	gst	2338006	2338614	+	glutathionine S-transferase		gene	gene2104	http://www.ncbi.nlm.nih.gov/gene/?term=YE2137
YE2138	YE2138	pdxY	pdxY	2338666	2339526	-	pyridoxamine kinase	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal	gene	gene2105	http://www.ncbi.nlm.nih.gov/gene/?term=YE2138
YE2139	YE2139	tyrS	tyrS	2339601	2340875	-	tyrosyl-tRNA synthetase	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)	gene	gene2106	http://www.ncbi.nlm.nih.gov/gene/?term=YE2139
YE2140	YE2140	pdxH	pdxH	2341125	2341778	-	pyridoxamine 5'-phosphate oxidase	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate	gene	gene2107	http://www.ncbi.nlm.nih.gov/gene/?term=YE2140
YE2141	YE2141		YE2141	2342034	2342387	-	lipoprotein	Previously sequenced as: Yersinia enterocolitica hypothetical protein SWALL:YOR4_YEREN (SWALL:P28837) (101 aa) fasta scores: E(): 1.2e-37%2C 100 38d in 101 aa. Also highly similar to Yersinia pestis putative lipoprotein Ypo2371 SWALL:Q8ZE18 (EMBL:AJ414152) (104 aa) fasta scores: E(): 1.3e-24%2C 67.89 38d in 109 aa	gene	gene2108	http://www.ncbi.nlm.nih.gov/gene/?term=YE2141
YE2142	YE2142	anmK	anmK	2342443	2343555	-	anhydro-N-acetylmuramic acid kinase	catalyzes hydrolysis of 1%2C6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate%3B involved in murein recycling	gene	gene2109	http://www.ncbi.nlm.nih.gov/gene/?term=YE2142
YE2143	YE2143	pcpY	pcpY	2344000	2344467	+	outer membrane lipoprotein		gene	gene2110	http://www.ncbi.nlm.nih.gov/gene/?term=YE2143
YE2144	YE2144	horYe	horYe	2344589	2345020	-	transcriptional regulator SlyA	Transcription regulator that can both activate or repress expression	gene	gene2111	http://www.ncbi.nlm.nih.gov/gene/?term=YE2144
YE2145	YE2145		YE2145	2345201	2345437	+	inner membrane protein	Similar to several including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YdhI or b1643 or z2658 or ecs2352 SWALL:YDHI_ECOLI (SWALL:P76184) (78 aa) fasta scores: E(): 6e-18%2C 61.11 38d in 72 aa and to Salmonella typhimurium putative inner membrane protein YdhI or Stm1443 SWALL:Q8ZPN2 (EMBL:AE008762) (78 aa) fasta scores: E(): 7e-16%2C 58.33 38d in 72 aa	gene	gene2112	http://www.ncbi.nlm.nih.gov/gene/?term=YE2145
YE2146	YE2146		YE2146	2345444	2346301	+	hlyD-family protein	Similar to several including: Salmonella typhi putative HlyD-family protein Sty1680 SWALL:Q8Z6P8 (EMBL:AL627271) (289 aa) fasta scores: E(): 3e-68%2C 60.07 id in 283 aa%2C Escherichia coli hypothetical protein YdhJ or b1644 SWALL:YDHJ_ECOLI (SWALL:P76185) (285 aa) fasta scores: E(): 1.2e-69%2C 62.19 38d in 283 aa and to Brucella melitensis fusaric acid resistance protein FusE SWALL:Q8YCJ5 (EMBL:AE009689) (285 aa) fasta scores: E(): 8.6e-41%2C 41.48 38d in 282 aa	gene	gene2113	http://www.ncbi.nlm.nih.gov/gene/?term=YE2146
YE2147	YE2147		YE2147	2346304	2348328	+	hypothetical protein	Similar to many proteins of undefined function including: Salmonella typhi hypothetical protein YdhK or Sty1681 SWALL:YDHK_SALTI (SWALL:Q8Z6P7) (679 aa) fasta scores: E(): 3.1e-173%2C 60.78 38d in 663 aa and to Escherichia coli hypothetical protein YdhK or b1645 SWALL:YDHK_ECOLI (SWALL:P76186) (670 aa) fasta scores: E(): 2.4e-172%2C 61.27 38d in 661 aa	gene	gene2114	http://www.ncbi.nlm.nih.gov/gene/?term=YE2147
YE2148	YE2148		YE2148	2348353	2349249	-	aldo/keto reductase		gene	gene2115	http://www.ncbi.nlm.nih.gov/gene/?term=YE2148
YE2149	YE2149		YE2149	2349386	2349625	-	hypothetical protein	Similar to the very C-terminus of Yersinia pestis hypothetical protein Ypo2376 SWALL:Q8ZE14 (EMBL:AJ414152) (121 aa) fasta scores: E(): 3.9e-29%2C 88.6 38d in 79 aa. Similar over the whole range to Salmonella typhi hypothetical protein Sty1684 SWALL:Q8Z6P4 (EMBL:AL627271) (79 aa) fasta scores: E(): 4e-23%2C 73.41 38d in 79 aa	gene	gene2116	http://www.ncbi.nlm.nih.gov/gene/?term=YE2149
YE2150	YE2150		YE2150	2349917	2351548	+	cell division protein	with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division	gene	gene2117	http://www.ncbi.nlm.nih.gov/gene/?term=YE2150
YE2151	YE2151		YE2151	2351671	2352273	+	TetR family transcriptional regulator		gene	gene2118	http://www.ncbi.nlm.nih.gov/gene/?term=YE2151
YE2152	YE2152		YE2152	2352350	2353447	+	N-ethylmaleimide reductase	FMN-linked%3B catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide	gene	gene2119	http://www.ncbi.nlm.nih.gov/gene/?term=YE2152
YE2153	YE2153	gloA	gloA	2353629	2354036	+	lactoylglutathione lyase		gene	gene2120	http://www.ncbi.nlm.nih.gov/gene/?term=YE2153
YE2154	YE2154	rnt	rnt	2354147	2354794	+	ribonuclease T	Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A)	gene	gene2121	http://www.ncbi.nlm.nih.gov/gene/?term=YE2154
YE2155	YE2155		YE2155	2355069	2355413	-	hypothetical protein		gene	gene2122	http://www.ncbi.nlm.nih.gov/gene/?term=YE2155
YE2156	YE2156		YE2156	2355847	2356737	+	hypothetical protein		gene	gene2123	http://www.ncbi.nlm.nih.gov/gene/?term=YE2156
YE2157	YE2157	sodB	sodB	2356988	2357566	+	superoxide dismutase	SodB%3B iron binding%3B present under aerobic and anaerobic conditions%3B destroys free radicals	gene	gene2124	http://www.ncbi.nlm.nih.gov/gene/?term=YE2157
YE2158	YE2158	purR	purR	2358092	2359117	+	DNA-binding transcriptional repressor PurR	binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis%3B is involved in regulation of purB%2C purC%2C purEK%2C purHD%2C purL%2C purMN and guaBA expression%3B binds hypoxanthine and guanine as inducers	gene	gene2125	http://www.ncbi.nlm.nih.gov/gene/?term=YE2158
YE2159	YE2159		YE2159	2359173	2360111	-	DNA-binding transcriptional regulator		gene	gene2126	http://www.ncbi.nlm.nih.gov/gene/?term=YE2159
YE2160	YE2160		YE2160	2360403	2361620	+	inner membrane transport protein YdhC	uncharacterized member of the major facilitator superfamily (MFS)	gene	gene2127	http://www.ncbi.nlm.nih.gov/gene/?term=YE2160
YE2161	YE2161	cdfA	cdfA	2361928	2363079	+	cyclopropane-fatty-acyl-phospholipid synthase	catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge	gene	gene2128	http://www.ncbi.nlm.nih.gov/gene/?term=YE2161
YE2162	YE2162	ribC	ribC	2363153	2363803	-	riboflavin synthase subunit alpha	catalyzes the formation of riboflavin from 6%2C7-dimethyl-8-(1-D-ribityl)lumazine	gene	gene2129	http://www.ncbi.nlm.nih.gov/gene/?term=YE2162
YE2163	YE2163		YE2163	2364118	2365491	+	multidrug efflux protein	NorM%3B MdtK%3B functions as a Na(+)/drug antiporter%3B inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones	gene	gene2130	http://www.ncbi.nlm.nih.gov/gene/?term=YE2163
YE2164	YE2164	pykF	pykF	2366685	2368097	+	pyruvate kinase	catalyzes the formation of phosphoenolpyruvate from pyruvate	gene	gene2134	http://www.ncbi.nlm.nih.gov/gene/?term=YE2164
YE2165	YE2165	lpp	lpp	2368417	2368653	+	major outer membrane lipoprotein		gene	gene2135	http://www.ncbi.nlm.nih.gov/gene/?term=YE2165
YE2166	YE2166		YE2166	2368885	2369952	-	hypothetical protein		gene	gene2136	http://www.ncbi.nlm.nih.gov/gene/?term=YE2166
YE2167	YE2167		YE2167	2370219	2370641	-	cysteine desufuration protein SufE	Acts with SufS to catalyze the formation of L-alanine from L-cysteine	gene	gene2137	http://www.ncbi.nlm.nih.gov/gene/?term=YE2167
YE2168	YE2168		YE2168	2370803	2371954	-	bifunctional cysteine desulfurase/selenocysteine lyase	catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine	gene	gene2138	http://www.ncbi.nlm.nih.gov/gene/?term=YE2168
YE2169	YE2169		YE2169	2372050	2373381	-	cysteine desulfurase activator complex subunit SufD	with SufBC activates cysteine desulfurase SufS	gene	gene2139	http://www.ncbi.nlm.nih.gov/gene/?term=YE2169
YE2170	YE2170	sufC	sufC	2373356	2374102	-	cysteine desulfurase	part of SUF system involved in inserting iron-sulfur clusters into proteins%3B in Escherichia coli this protein forms a complex with SufBD%3B the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE	gene	gene2140	http://www.ncbi.nlm.nih.gov/gene/?term=YE2170
YE2171	YE2171		YE2171	2374159	2375670	-	cysteine desulfurase activator complex subunit SufB	with SufCD activates cysteine desulfurase SufS	gene	gene2141	http://www.ncbi.nlm.nih.gov/gene/?term=YE2171
YE2172	YE2172	sufA	sufA	2375685	2376056	-	iron-sulfur cluster assembly scaffold protein	functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]%3B [4Fe-4S]) are assembled%3B forms a homodimer%3B similar to IscA protein	gene	gene2142	http://www.ncbi.nlm.nih.gov/gene/?term=YE2172
YE2173	YE2173		YE2173	2376748	2377170	-	hypothetical protein		gene	gene2143	http://www.ncbi.nlm.nih.gov/gene/?term=YE2173
YE2174	YE2174		YE2174	2377345	2380401	-	hypothetical protein		gene	gene2144	http://www.ncbi.nlm.nih.gov/gene/?term=YE2174
YE2175	YE2175		YE2175	2380848	2381951	+	inner membrane protein	YdiK%3B inner membrane protein%3B ydiK promoter presents a PurR sequence%2C suggesting that its expression is purine-regulated%3B unknown function	gene	gene2145	http://www.ncbi.nlm.nih.gov/gene/?term=YE2175
YE2176	YE2176	pps	pps	2382512	2384893	-	phosphoenolpyruvate synthase	catalyzes the formation of phosphoenolpyruvate from pyruvate	gene	gene2147	http://www.ncbi.nlm.nih.gov/gene/?term=YE2176
YE2177	YE2177		YE2177	2385180	2386001	+	hypothetical protein		gene	gene2148	http://www.ncbi.nlm.nih.gov/gene/?term=YE2177
YE2178	YE2178	aroH	aroH	2386228	2387277	+	phospho-2-dehydro-3-deoxyheptonate aldolase	tryptophan sensitive%3B catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate	gene	gene2149	http://www.ncbi.nlm.nih.gov/gene/?term=YE2178
YE2180	YE2180	hemR2	hemR2	2387828	2389858	+	hemin storage receptor protein	Similar to Yersinia pestis hemin storage receptor precursor HmuR or Ypo0283 or Y0543 SWALL:HMUR_YERPE (SWALL:Q56989) (676 aa) fasta scores: E(): 1.2e-126%2C53.74 38d in 681 aa. Also similar to Yersinia enterocolitica hemin receptor precursor HemR or YE0331 SWALL:HEMR_YEREN (SWALL:P31499) (687 aa) fasta scores: E(): 7.5e-123%2C 53.21 38d in 699 aa	gene	gene2150	http://www.ncbi.nlm.nih.gov/gene/?term=YE2180
YE2181	YE2181	hemS2	hemS2	2389973	2391034	+	hemin transport protein	Similar to Yersinia enterocolitica hemin transport protein HemS or YE0330 SWALL:HEMS_YEREN (SWALL:P31517) (345 aa) fasta scores: E(): 3.2e-69%2C 51.59 38d in 345 aa and to Yersinia pestis hemin transport protein HemS or ypo0282 or y0542 SWALL:HMUS_YERPE (SWALL:Q56990) (345 aa) fasta scores: E(): 1.5e-73%2C 53.33 38d in 345 aa	gene	gene2151	http://www.ncbi.nlm.nih.gov/gene/?term=YE2181
YE2182	YE2182	hmuT2	hmuT2	2391027	2391860	+	hemin-binding periplasmic protein	Similar to Yersinia pestis hemin-binding periplasmic protein hmuT precursor or Ypo0281 or Y0541 SWALL:HMUT_YERPE (SWALL:Q56991) (279 aa) fasta scores: E(): 1.3e-57%2C 60.37 38d in 270 aa%2C and to Yersinia enterocolitica hemin binding protein HemT SWALL:P74979 (EMBL:X77867) (279 aa) fasta scores: E(): 5.8e-59%2C 61.11 id in 270 aa	gene	gene2152	http://www.ncbi.nlm.nih.gov/gene/?term=YE2182
YE2183	YE2183		YE2183	2391920	2393419	-	hypothetical protein		gene	gene2153	http://www.ncbi.nlm.nih.gov/gene/?term=YE2183
YE2184	YE2184	lplA	lplA	2393419	2394435	-	lipoate-protein ligase A	Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins	gene	gene2154	http://www.ncbi.nlm.nih.gov/gene/?term=YE2184
YE2185	YE2185	nlpC	nlpC	2395004	2395468	-	lipoprotein		gene	gene2155	http://www.ncbi.nlm.nih.gov/gene/?term=YE2185
YE2186	YE2186		YE2186	2395730	2396116	-	hypothetical protein		gene	gene2156	http://www.ncbi.nlm.nih.gov/gene/?term=YE2186
YE2187	YE2187		YE2187	2396113	2396457	-	hypothetical protein		gene	gene2157	http://www.ncbi.nlm.nih.gov/gene/?term=YE2187
YE2188	YE2188	arnT	arnT	2396454	2398118	-	4-amino-4-deoxy-L-arabinose transferase	catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A	gene	gene2158	http://www.ncbi.nlm.nih.gov/gene/?term=YE2188
YE2189	YE2189		YE2189	2398118	2399020	-	hypothetical protein		gene	gene2159	http://www.ncbi.nlm.nih.gov/gene/?term=YE2189
YE2190	YE2190		YE2190	2399017	2401080	-	bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase	Bifunctional polymyxin resistance arnA protein%3B catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose%3B active in certain mutant strains	gene	gene2160	http://www.ncbi.nlm.nih.gov/gene/?term=YE2190
YE2191	YE2191	pmrF	pmrF	2401077	2402060	-	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase	catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate	gene	gene2161	http://www.ncbi.nlm.nih.gov/gene/?term=YE2191
YE2192	YE2192		YE2192	2402053	2403201	-	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase	catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose	gene	gene2162	http://www.ncbi.nlm.nih.gov/gene/?term=YE2192
YE2193	YE2193	btuD	btuD	2403548	2404309	-	vitamin B12-transporter ATPase	ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell	gene	gene2163	http://www.ncbi.nlm.nih.gov/gene/?term=YE2193
YE2194	YE2194	btuE	btuE	2404331	2404885	-	glutathione peroxidase	similar to glutathione peroxidase%3B member of the btuCED operon which is required for vitamin B12 transport across the inner membrane	gene	gene2164	http://www.ncbi.nlm.nih.gov/gene/?term=YE2194
YE2195	YE2195	btuC	btuC	2404955	2405962	-	vtamin B12-transporter permease	with BtuD and BtuF transports vitamin B12 into the cell	gene	gene2165	http://www.ncbi.nlm.nih.gov/gene/?term=YE2195
YE2196	YE2196		YE2196	2406135	2406629	-	hypothetical protein		gene	gene2166	http://www.ncbi.nlm.nih.gov/gene/?term=YE2196
YE2198	YE2198	cysB	cysB	2407702	2408676	-	transcriptional regulator CysB	LysR-type transcriptional regulator%3B contains helix-turn-helix (HTH) motif%3B in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon%3B autoregulates expression%3B crystal structure of Klebsiella aerogenes showed tetramer formation	gene	gene2167	http://www.ncbi.nlm.nih.gov/gene/?term=YE2198
YE2199	YE2199	supX	supX	2409236	2411851	-	DNA topoisomerase I	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining%2C maintains net negative superhelicity	gene	gene2168	http://www.ncbi.nlm.nih.gov/gene/?term=YE2199
YE2201	YE2201		YE2201	2412292	2412543	+	hypothetical protein		gene	gene2169	http://www.ncbi.nlm.nih.gov/gene/?term=YE2201
YE2202	YE2202	tpn1330	tpn1330	2412636	2413829	-	transposase for IS1330	Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:CAC83041 (EMBL:AJ344215) (397 aa) fasta scores: E(): 5.4e-162%2C99.24 38d in 397 aa. Also similar to Shigella flexneri%2Cand Shigella flexneri 2a IS10 orf S0034 or Cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 6.5e-113%2C 68.51 38d in 397 aa	gene	gene2170	http://www.ncbi.nlm.nih.gov/gene/?term=YE2202
YE2203	YE2203	sohB	sohB	2413957	2415003	-	periplasmic protease	SohB%3B periplasmic protein%3B member of the peptidase S49 family	gene	gene2171	http://www.ncbi.nlm.nih.gov/gene/?term=YE2203
YE2204	YE2204		YE2204	2415176	2415937	+	short chain dehydrogenase		gene	gene2172	http://www.ncbi.nlm.nih.gov/gene/?term=YE2204
YE2205	YE2205	btuR	btuR	2415949	2416539	+	cob(I)yrinic acid a%2Cc-diamide adenosyltransferase	catalyzes the formation of adenosylcob(III)yrinic acid a%2Cc-diamide from cob(I)yrinic acid a%2Cc-diamide	gene	gene2173	http://www.ncbi.nlm.nih.gov/gene/?term=YE2205
YE2206	YE2206		YE2206	2416616	2417545	-	23S rRNA pseudouridylate synthase B	catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA	gene	gene2174	http://www.ncbi.nlm.nih.gov/gene/?term=YE2206
YE2207	YE2207		YE2207	2417906	2418526	-	hypothetical protein		gene	gene2175	http://www.ncbi.nlm.nih.gov/gene/?term=YE2207
YE2208	YE2208	trpH	trpH	2418555	2419343	-	hypothetical protein		gene	gene2176	http://www.ncbi.nlm.nih.gov/gene/?term=YE2208
YE2209	YE2209	trpE	trpE	2420029	2421591	+	anthranilate synthase component I	with component II%2C the glutamine amidotransferase%2C catalyzes the formation of anthranilate from chorismate and glutamine	gene	gene2177	http://www.ncbi.nlm.nih.gov/gene/?term=YE2209
YE2210	YE2210	trpG	trpG	2421606	2422196	+	anthranilate synthase component II	TrpG%3B with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine%3B TrpG provides the glutamine amidotransferase activity	gene	gene2178	http://www.ncbi.nlm.nih.gov/gene/?term=YE2210
YE2211	YE2211	trpD	trpD	2422314	2423273	+	anthranilate phosphoribosyltransferase	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate	gene	gene2179	http://www.ncbi.nlm.nih.gov/gene/?term=YE2211
YE2212	YE2212	trpC	trpC	2423319	2424653	+	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase	monomeric bifunctional protein%3B functions in tryptophan biosynthesis pathway%3B phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate	gene	gene2180	http://www.ncbi.nlm.nih.gov/gene/?term=YE2212
YE2213	YE2213	trpB	trpB	2424837	2426027	+	tryptophan synthase subunit beta	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate	gene	gene2181	http://www.ncbi.nlm.nih.gov/gene/?term=YE2213
YE2214	YE2214	trpA	trpA	2426027	2426833	+	tryptophan synthase subunit alpha	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis	gene	gene2182	http://www.ncbi.nlm.nih.gov/gene/?term=YE2214
YE2215	YE2215		YE2215	2427095	2427409	+	lipoprotein		gene	gene2183	http://www.ncbi.nlm.nih.gov/gene/?term=YE2215
YE2216	YE2216	ompW	ompW	2427708	2428343	-	outer membrane protein W	receptor for colicin S4	gene	gene2184	http://www.ncbi.nlm.nih.gov/gene/?term=YE2216
YE2216A	YE2216A		YE2216A	2428604	2429047	+	hypothetical protein	Similar to many proteins of undefined function including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YkgJ or b0288 or z0354 or ecs0318 SWALL:YKGJ_ECOLI (SWALL:P71300) (109 aa) fasta scores: E(): 5e-25%2C 58.33 38d in 108 aa%2C Pseudomonas aeruginosa hypothetical protein Pa3209 SWALL:Q9HZ31 (EMBL:AE004744) (123 aa) fasta scores: E(): 3.1e-22%2C 54.54 38d in 110 aa and to Acinetobacter calcoaceticus putative ferredoxin SWALL:FERX_ACICA (SWALL:P31004) (121 aa) fasta scores: E(): 3.6e-13%2C 43.1 38d in 116 aa	gene	gene2185	http://www.ncbi.nlm.nih.gov/gene/?term=YE2216A
YE2218	YE2218		YE2218	2429099	2429866	+	hypothetical protein		gene	gene2186	http://www.ncbi.nlm.nih.gov/gene/?term=YE2218
YE2219	YE2219		YE2219	2429913	2431667	-	sulfate permease	Similar to Vibrio cholerae sulfate permease family protein Vca0103 SWALL:Q9KN62 (EMBL:AE004353) (592 aa) fasta scores: E(): 7e-123%2C 57.81 38d in 550 aa and to Synechocystis sp. high affinity sulfate transporter Slr1776 SWALL:P72770 (EMBL:D90900) (566 aa) fasta scores: E(): 2.3e-47%2C 32.11 38d in 520 aa	gene	gene2187	http://www.ncbi.nlm.nih.gov/gene/?term=YE2219
YE2220	YE2220	ispA	ispA	2431898	2432440	+	intracellular septation protein A	Involved in cell division%3B probably involved in intracellular septation	gene	gene2188	http://www.ncbi.nlm.nih.gov/gene/?term=YE2220
YE2221	YE2221		YE2221	2432460	2432930	+	acyl-CoA thioester hydrolase		gene	gene2189	http://www.ncbi.nlm.nih.gov/gene/?term=YE2221
YE2222	YE2222	tonB	tonB	2433026	2433787	-	transporter	membrane spanning protein in TonB-ExbB-ExbD complex%3B transduces proton motive force of the cytoplasmic membrane to outer membrane transporters%3B involved in the transport of ron-siderophore complexes%2C vitamin B12 and colicins	gene	gene2190	http://www.ncbi.nlm.nih.gov/gene/?term=YE2222
YE2223	YE2223		YE2223	2434095	2434391	+	YciI-like protein	unknown function%3B YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase%2C but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity	gene	gene2191	http://www.ncbi.nlm.nih.gov/gene/?term=YE2223
YE2224	YE2224		YE2224	2434593	2434856	-	hypothetical protein		gene	gene2192	http://www.ncbi.nlm.nih.gov/gene/?term=YE2224
YE2225	YE2225		YE2225	2435008	2435730	-	hypothetical protein	Similar to many proteins of undefined function including: Yersinia pestis hypothetical protein Ypo2779 SWALL:Q8ZD14 (EMBL:AJ414153) (232 aa) fasta scores: E(): 2.7e-44%2C 48.06 38d in 233 aa%2C and to Salmonella typhi hypothetical protein Sty1354 SWALL:Q8Z7C5 (EMBL:AL627270) (235 aa) fasta scores: E(): 8.2e-21%2C 33.79 38d in 219 aa	gene	gene2193	http://www.ncbi.nlm.nih.gov/gene/?term=YE2225
YE2227	YE2227	cls	cls	2436800	2438260	+	cardiolipin synthetase	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)	gene	gene2194	http://www.ncbi.nlm.nih.gov/gene/?term=YE2227
YE2228	YE2228		YE2228	2438395	2438718	+	dsDNA-mimic protein	highly acidic protein%3B the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi)%3B binds heat-unstable protein (HU-alpha) which is a histone-like protein	gene	gene2195	http://www.ncbi.nlm.nih.gov/gene/?term=YE2228
YE2229	YE2229	oppF	oppF	2438864	2439865	-	oligopeptide transporter ATP-binding protein		gene	gene2196	http://www.ncbi.nlm.nih.gov/gene/?term=YE2229
YE2230	YE2230	oppD	oppD	2439862	2440863	-	oligopeptide ABC transporter ATP-binding protein		gene	gene2197	http://www.ncbi.nlm.nih.gov/gene/?term=YE2230
YE2231	YE2231	oppC	oppC	2440875	2441780	-	oligopeptide transporter permease		gene	gene2198	http://www.ncbi.nlm.nih.gov/gene/?term=YE2231
YE2232	YE2232	oppB	oppB	2441799	2442719	-	oligopeptide transporter permease		gene	gene2199	http://www.ncbi.nlm.nih.gov/gene/?term=YE2232
YE2233	YE2233	oppA	oppA	2442804	2444441	-	periplasmic oligopeptide-binding protein		gene	gene2200	http://www.ncbi.nlm.nih.gov/gene/?term=YE2233
YE2234	YE2234	oppA2	oppA2	2444670	2446385	-	periplasmic oligopeptide-binding protein	Similar to Escherichia coli periplasmic oligopeptide-binding protein precursor OppA or b1243 SWALL:OPPA_ECOLI (SWALL:P23843) (543 aa) fasta scores: E(): 6.4e-140%2C 62.43 38d in 535 aa and to Haemophilus influenzae periplasmic oligopeptide-binding protein precursor OppA or Hi1124 SWALL:OPPA_HAEIN (SWALL:P71370) (541 aa) fasta scores: E(): 1.8e-111%2C 51.2 38d in 539 aa. Note this CDS is also highly similar to YE2233 64.991 identity in 537 aa overlap.	gene	gene2201	http://www.ncbi.nlm.nih.gov/gene/?term=YE2234
YE2237	YE2237		YE2237	2447238	2447882	-	hypothetical protein		gene	gene2202	http://www.ncbi.nlm.nih.gov/gene/?term=YE2237
YE2238	YE2238	adhE	adhE	2448583	2451258	+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase		gene	gene2203	http://www.ncbi.nlm.nih.gov/gene/?term=YE2238
YE2239	YE2239	tdk	tdk	2451758	2452357	-	thymidine kinase	catalyzes the formation of thymidine 5'-phosphate from thymidine	gene	gene2204	http://www.ncbi.nlm.nih.gov/gene/?term=YE2239
YE2241	YE2241	bglY	bglY	2453110	2453520	+	global DNA-binding transcriptional dual regulator H-NS		gene	gene2205	http://www.ncbi.nlm.nih.gov/gene/?term=YE2241
YE2242	YE2242		YE2242	2453903	2455252	-	nucleotide sugar dehydrogenase		gene	gene2206	http://www.ncbi.nlm.nih.gov/gene/?term=YE2242
YE2243	YE2243		YE2243	2455574	2456590	-	response regulator of RpoS		gene	gene2207	http://www.ncbi.nlm.nih.gov/gene/?term=YE2243
YE2244	YE2244		YE2244	2456692	2457594	-	hypothetical protein	Similar to many including: Salmonella typhimurium putative phosphoesterase YchK or Stm1754 SWALL:Q8ZP44 (EMBL:AE008778) (301 aa) fasta scores: E(): 1.6e-79%2C67.78 38d in 298 aa%2C Escherichia coli O157:H7 orf%2Chypothetical protein YchK or z2010 or ecs1736 SWALL:Q8XDB1 (EMBL:AE005340) (314 aa) fasta scores: E(): 2.5e-79%2C67.78 38d in 298 aa and Salmonella typhi hypothetical protein Sty1296 sty1296 SWALL:Q8Z7F2 (EMBL:AL627269) (301 aa) fasta scores: E(): 1.6e-78%2C 67.11 38d in 298 aa	gene	gene2208	http://www.ncbi.nlm.nih.gov/gene/?term=YE2244
YE2245	YE2245		YE2245	2457914	2458324	+	hypothetical protein	Weakly similar to several acetyltransferases including: Rhizobium meliloti putative acetyltransferase protein R01432 or Smc01017 SWALL:Q92QA6 (EMBL:AL591787) (156 aa) fasta scores: E(): 1.9e-11%2C 38.33 38d in 120 aa and to Azospirillum brasilense Iaa acetyltransferase SWALL:IAAT_AZOBR (SWALL:P26945) (153 aa) fasta scores: E(): 5.7e-11%2C 38.01 38d in 121 aa	gene	gene2209	http://www.ncbi.nlm.nih.gov/gene/?term=YE2245
YE2246	YE2246		YE2246	2458963	2459427	+	hypothetical protein		gene	gene2210	http://www.ncbi.nlm.nih.gov/gene/?term=YE2246
YE2247	YE2247	purU	purU	2459509	2460357	+	formyltetrahydrofolate deformylase	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis%3B has a role in one-carbon metabolism%3B forms a homohexamer%3B activated by methionine and inhibited by glycine	gene	gene2211	http://www.ncbi.nlm.nih.gov/gene/?term=YE2247
YE2253	YE2253		YE2253	2461446	2462306	-	LysR family transcriptional regulator		gene	gene2217	http://www.ncbi.nlm.nih.gov/gene/?term=YE2253
YE2254	YE2254	xth	xth	2463086	2463892	+	exonuclease III	removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction	gene	gene2218	http://www.ncbi.nlm.nih.gov/gene/?term=YE2254
YE2255	YE2255	nudG	nudG	2463976	2464362	+	pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase		gene	gene2219	http://www.ncbi.nlm.nih.gov/gene/?term=YE2255
YE2256	YE2256		YE2256	2464367	2464657	-	hypothetical protein		gene	gene2220	http://www.ncbi.nlm.nih.gov/gene/?term=YE2256
YE2257	YE2257	topB	topB	2464654	2466582	-	DNA topoisomerase III	decatenates replicating daughter chromosomes	gene	gene2221	http://www.ncbi.nlm.nih.gov/gene/?term=YE2257
YE2258	YE2258	fdhB	fdhB	2466626	2467672	-	selenophosphate synthetase	catalyzes the formation of selenophosphate from selenide and ATP	gene	gene2222	http://www.ncbi.nlm.nih.gov/gene/?term=YE2258
YE2259	YE2259		YE2259	2468002	2468553	-	hypothetical protein		gene	gene2223	http://www.ncbi.nlm.nih.gov/gene/?term=YE2259
YE2260	YE2260	sppA	sppA	2468716	2470566	+	protease 4	SppA%3B catalyzes the degradation of cleaved signal peptides%3B essential to maintain secretion of mature proteins across the membrane	gene	gene2224	http://www.ncbi.nlm.nih.gov/gene/?term=YE2260
YE2261	YE2261	ansA	ansA	2470810	2471826	+	asparaginase	converts asparagine to aspartate and ammonia	gene	gene2225	http://www.ncbi.nlm.nih.gov/gene/?term=YE2261
YE2262	YE2262	nam	nam	2471842	2472495	+	nicotinamidase/pyrazinamidase	catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide	gene	gene2226	http://www.ncbi.nlm.nih.gov/gene/?term=YE2262
YE2263	YE2263		YE2263	2472570	2472842	-	hypothetical protein		gene	gene2227	http://www.ncbi.nlm.nih.gov/gene/?term=YE2263
YE2264	YE2264		YE2264	2472916	2473329	-	methionine sulfoxide reductase B	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form%3B provides protection against oxidative stress	gene	gene2228	http://www.ncbi.nlm.nih.gov/gene/?term=YE2264
YE2265	YE2265	gapA	gapA	2473668	2474672	+	glyceraldehyde 3-phosphate dehydrogenase A		gene	gene2229	http://www.ncbi.nlm.nih.gov/gene/?term=YE2265
YE2266	YE2266		YE2266	2474848	2475249	-	hypothetical protein	no significant database hits	gene	gene2230	http://www.ncbi.nlm.nih.gov/gene/?term=YE2266
YE2267	YE2267		YE2267	2475249	2475458	-	hypothetical protein	no significant database hits	gene	gene2231	http://www.ncbi.nlm.nih.gov/gene/?term=YE2267
YE2269	YE2269		YE2269	2476274	2477152	+	hypothetical protein		gene	gene2232	http://www.ncbi.nlm.nih.gov/gene/?term=YE2269
YE2270	YE2270	tpn1330	tpn1330	2477460	2478653	+	transposase for IS1330	Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:CAC83041 (EMBL:AJ344215) (397 aa) fasta scores: E(): 1.4e-162%2C99.74 38d in 397 aa. Also similar to Shigella flexneri%2Cand Shigella flexneri 2A IS10 orf S0034 or Cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 1.1e-112%2C 68.26 38d in 397 aa	gene	gene2233	http://www.ncbi.nlm.nih.gov/gene/?term=YE2270
YE2271	YE2271		YE2271	2478725	2479495	-	hypothetical protein		gene	gene2234	http://www.ncbi.nlm.nih.gov/gene/?term=YE2271
YE2272	YE2272		YE2272	2480041	2481975	+	hypothetical protein		gene	gene2235	http://www.ncbi.nlm.nih.gov/gene/?term=YE2272
YE2273	YE2273		YE2273	2482087	2483364	+	hypothetical protein		gene	gene2236	http://www.ncbi.nlm.nih.gov/gene/?term=YE2273
YE2274	YE2274		YE2274	2483467	2484516	+	hypothetical protein		gene	gene2237	http://www.ncbi.nlm.nih.gov/gene/?term=YE2274
YE2275	YE2275		YE2275	2484711	2485157	+	hypothetical protein	no significant database hits	gene	gene2238	http://www.ncbi.nlm.nih.gov/gene/?term=YE2275
YE2276	YE2276		YE2276	2485170	2486075	-	LysR family transcriptional regulator		gene	gene2239	http://www.ncbi.nlm.nih.gov/gene/?term=YE2276
YE2277	YE2277		YE2277	2486244	2487116	+	hypothetical protein		gene	gene2240	http://www.ncbi.nlm.nih.gov/gene/?term=YE2277
YE2278	YE2278		YE2278	2487463	2490057	+	phosphodiesterase	Weakly similar to many including: Rhizobium meliloti hypothetical protein R00959 or Smc00038 SWALL:Q92KJ3 (EMBL:AL591785) (772 aa) fasta scores: E(): 4.1e-83%2C 35 38d in 737 aa and to Acetobacter xylinus C-di-GMP phosphodiesterase a PdeA3 SWALL:O87378 (EMBL:AF052519) (740 aa) fasta scores: E(): 1.2e-81%2C 35.4 id in 723 aa. Contains many motifs which are commonly found in phosphodiesterases.	gene	gene2241	http://www.ncbi.nlm.nih.gov/gene/?term=YE2278
YE2279	YE2279		YE2279	2490228	2491418	+	multidrug resistance protein		gene	gene2242	http://www.ncbi.nlm.nih.gov/gene/?term=YE2279
YE2280	YE2280	dadB	dadB	2491633	2492700	-	alanine racemase	Highly similar to Escherichia coli alanine racemase%2C catabolic DadX or DadB or AlnB or b1190 SWALL:ALR2_ECOLI (SWALL:P29012) (356 aa) fasta scores: E(): 3.6e-89%2C 63.38 38d in 355 aa and to Salmonella typhimurium alanine racemase%2C catabolic DadX or DadB or Stm1802 SWALL:ALR2_SALTY (SWALL:P06191) (356 aa) fasta scores: E(): 1.3e-87%2C 62.25 38d in 355 aa	gene	gene2243	http://www.ncbi.nlm.nih.gov/gene/?term=YE2280
YE2281	YE2281	dadA	dadA	2492900	2494204	-	D-amino acid dehydrogenase small subunit	catalyzes the oxidative deamination of D-amino acids	gene	gene2244	http://www.ncbi.nlm.nih.gov/gene/?term=YE2281
YE2282	YE2282		YE2282	2494715	2496250	+	SpoVR family protein		gene	gene2245	http://www.ncbi.nlm.nih.gov/gene/?term=YE2282
YE2283	YE2283	fadR	fadR	2496336	2497055	-	fatty acid metabolism regulator	Multifunctional regulator of fatty acid metabolism	gene	gene2246	http://www.ncbi.nlm.nih.gov/gene/?term=YE2283
YE2284	YE2284	nhaB	nhaB	2497366	2498940	+	sodium/proton antiporter	involved in regulation of intracellular pH under alkaline conditions	gene	gene2247	http://www.ncbi.nlm.nih.gov/gene/?term=YE2284
YE2285	YE2285	dsbB	dsbB	2499170	2499700	+	disulfide bond formation protein B	disulfide oxidoreductase%3B integral membrane protein%3B required for perioplasmic disulfide bond formation%3B oxidizes DsbA protein	gene	gene2248	http://www.ncbi.nlm.nih.gov/gene/?term=YE2285
YE2286	YE2286	lpxA2	lpxA2	2499837	2500625	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase	Highly similar to Yersinia enterocolitica acyl-[acyl-carrier-protein]--udp-N-acetylglucosamine O-acyltransferase LpxA or YE3272 SWALL:LPXA_YEREN (SWALL:P32201) (262 aa) fasta scores: E(): 1.2e-58%2C 55.34 id in 262 aa%2C and to Escherichia coli acyl-[acyl-carrier-protein]--udp-N-acetylglucosamine O-acyltransferase LpxA or b0181 SWALL:LPXA_ECOLI (SWALL:P10440) (262 aa) fasta scores: E(): 2e-56%2C 55.72 id in 262 aa	gene	gene2249	http://www.ncbi.nlm.nih.gov/gene/?term=YE2286
YE2288	YE2288		YE2288	2501179	2501535	-	hypothetical protein		gene	gene2250	http://www.ncbi.nlm.nih.gov/gene/?term=YE2288
YE2289	YE2289		YE2289	2502036	2502494	+	phage membrane protein		gene	gene2251	http://www.ncbi.nlm.nih.gov/gene/?term=YE2289
YE2290	YE2290		YE2290	2502488	2502814	+	phage-associated acyl carrier protein		gene	gene2252	http://www.ncbi.nlm.nih.gov/gene/?term=YE2290
YE2291	YE2291		YE2291	2503099	2503740	+	hypothetical protein	doubtful CDS with no significant database hits	gene	gene2253	http://www.ncbi.nlm.nih.gov/gene/?term=YE2291
YE2292	YE2292		YE2292	2504021	2504479	-	phage tail fiber assembly protein		gene	gene2254	http://www.ncbi.nlm.nih.gov/gene/?term=YE2292
YE2293	YE2293		YE2293	2504488	2506299	-	phage tail protein	Similar to Salmonella typhi putative phage tail protein Hcm2.0051C SWALL:Q935B1 (EMBL:AL513384) (850 aa) fasta scores: E(): 3.1e-12%2C 26.89 38d in 409 aa%2C Yersinia pestis hypothetical phage protein Ypo2133 SWALL:Q8ZEM8 (EMBL:AJ414151) (305 aa) fasta scores: E(): 1.1e-23%2C37.41 38d in 302 aa and Salmonella typhimurium LT2 gifsy-2 prophage probable tail fiber protein Stm1049 SWALL:Q8ZQ81 (EMBL:AE008743) (812 aa) fasta scores: E(): 0.00023%2C25.79 38d in 442 aa	gene	gene2255	http://www.ncbi.nlm.nih.gov/gene/?term=YE2293
YE2294	YE2294		YE2294	2506325	2507029	-	phage-like protein	Weakly similar to Bacteriophage 933W%2C Bacteriophage VT2-Sa%2C and Stx2 converting bacteriophage I hypothetical 23.1 kDa protein l0127 SWALL:Q9XJL4 (EMBL:AF125520) (205 aa) fasta scores: E(): 0.033%2C 29.37 38d in 160 aa and to Bacteriophage N15 Gp23 SWALL:O64337 (EMBL:AF064539) (225 aa) fasta scores: E(): 8.1%2C 25.83 38d in 240 aa	gene	gene2256	http://www.ncbi.nlm.nih.gov/gene/?term=YE2294
YE2295	YE2295		YE2295	2507029	2507295	-	hypothetical protein	no significant database hits	gene	gene2257	http://www.ncbi.nlm.nih.gov/gene/?term=YE2295
YE2296	YE2296		YE2296	2507298	2510480	-	phage host specificity protein		gene	gene2258	http://www.ncbi.nlm.nih.gov/gene/?term=YE2296
YE2297	YE2297		YE2297	2510655	2510954	+	hypothetical protein	no significant database hits	gene	gene2259	http://www.ncbi.nlm.nih.gov/gene/?term=YE2297
YE2298	YE2298		YE2298	2510984	2511202	-	hypothetical protein	Similar to the N-terminus of many hypothetical E. coli proteins including: Escherichia coli hypothetical protein YdfR or b1555 SWALL:YDFR_ECOLI (SWALL:P76160) (103 aa) fasta scores: E(): 1.8e-05%2C 38.88 38d in 72 aa and to Escherichia coli O157:H7 hypothetical protein Ecs1531 or ecs3496 SWALL:Q8X4K2 (EMBL:AP002555) (114 aa) fasta scores: E(): 0.00034%2C 37.5 38d in 72 aa	gene	gene2260	http://www.ncbi.nlm.nih.gov/gene/?term=YE2298
YE2299	YE2299		YE2299	2511244	2511846	-	phage tail assembly protein		gene	gene2261	http://www.ncbi.nlm.nih.gov/gene/?term=YE2299
YE2300	YE2300		YE2300	2511908	2512330	-	hypothetical protein	Similar to several including: Yersinia pestis hypothetical protein Y1020 or Ypmt1.32 SWALL:O68750 (EMBL:AF074611) (140 aa) fasta scores: E(): 4e-22%2C 49.63 id in 135 aa and to Salmonella typhi putative lipoprotein Hcm2.0080 SWALL:Q934Y7 (EMBL:AL513384) (140 aa) fasta scores: E(): 4.7e-22%2C 49.63 38d in 135 aa	gene	gene2262	http://www.ncbi.nlm.nih.gov/gene/?term=YE2300
YE2301	YE2301		YE2301	2512327	2512725	-	phage-related membrane protein	no significant database hits	gene	gene2263	http://www.ncbi.nlm.nih.gov/gene/?term=YE2301
YE2302	YE2302		YE2302	2512818	2513546	-	hypothetical protein	no significant database hits	gene	gene2264	http://www.ncbi.nlm.nih.gov/gene/?term=YE2302
YE2303	YE2303		YE2303	2513558	2513896	-	hypothetical protein	no significant database hits	gene	gene2265	http://www.ncbi.nlm.nih.gov/gene/?term=YE2303
YE2305	YE2305		YE2305	2514312	2514725	+	hypothetical protein	no significant database hits	gene	gene2266	http://www.ncbi.nlm.nih.gov/gene/?term=YE2305
YE2306	YE2306		YE2306	2514836	2515153	-	hypothetical protein	no significant database hits	gene	gene2267	http://www.ncbi.nlm.nih.gov/gene/?term=YE2306
YE2308	YE2308		YE2308	2515365	2515712	-	TonB-related phage protein	Similar to Escherichia coli TonB protein or exba or b1252 SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 1.7e-09%2C 35.35 38d in 99 aa and to Yersinia enterocolitica TonB protein SWALL:TONB_YEREN (SWALL:Q05740) (255 aa) fasta scores: E(): 2.2e-06%2C 40 38d in 70 aa	gene	gene2268	http://www.ncbi.nlm.nih.gov/gene/?term=YE2308
YE2310	YE2310		YE2310	2515867	2516571	-	phage minor tail protein		gene	gene2269	http://www.ncbi.nlm.nih.gov/gene/?term=YE2310
YE2311	YE2311		YE2311	2516574	2517326	-	hypothetical protein		gene	gene2270	http://www.ncbi.nlm.nih.gov/gene/?term=YE2311
YE2312	YE2312		YE2312	2517343	2517684	-	hypothetical protein		gene	gene2271	http://www.ncbi.nlm.nih.gov/gene/?term=YE2312
YE2313	YE2313		YE2313	2517687	2520482	-	phage tail protein		gene	gene2272	http://www.ncbi.nlm.nih.gov/gene/?term=YE2313
YE2314	YE2314		YE2314	2520735	2520995	-	hypothetical protein		gene	gene2273	http://www.ncbi.nlm.nih.gov/gene/?term=YE2314
YE2315	YE2315		YE2315	2521043	2521354	-	hypothetical protein		gene	gene2274	http://www.ncbi.nlm.nih.gov/gene/?term=YE2315
YE2316	YE2316		YE2316	2521367	2522287	-	hypothetical protein		gene	gene2275	http://www.ncbi.nlm.nih.gov/gene/?term=YE2316
YE2317	YE2317		YE2317	2522354	2522761	-	hypothetical protein		gene	gene2276	http://www.ncbi.nlm.nih.gov/gene/?term=YE2317
YE2318	YE2318		YE2318	2522758	2523342	-	hypothetical protein		gene	gene2277	http://www.ncbi.nlm.nih.gov/gene/?term=YE2318
YE2319	YE2319		YE2319	2523344	2523694	-	hypothetical protein		gene	gene2278	http://www.ncbi.nlm.nih.gov/gene/?term=YE2319
YE2320	YE2320		YE2320	2523694	2524221	-	hypothetical protein		gene	gene2279	http://www.ncbi.nlm.nih.gov/gene/?term=YE2320
YE2321	YE2321		YE2321	2524224	2525429	-	hypothetical protein		gene	gene2280	http://www.ncbi.nlm.nih.gov/gene/?term=YE2321
YE2322	YE2322		YE2322	2525443	2526216	-	hypothetical protein		gene	gene2281	http://www.ncbi.nlm.nih.gov/gene/?term=YE2322
YE2323	YE2323		YE2323	2526338	2527450	-	hypothetical protein		gene	gene2282	http://www.ncbi.nlm.nih.gov/gene/?term=YE2323
YE2324	YE2324		YE2324	2527451	2528839	-	hypothetical protein		gene	gene2283	http://www.ncbi.nlm.nih.gov/gene/?term=YE2324
YE2325	YE2325		YE2325	2528839	2530401	-	phage terminase large subunit	Similar to Methanobacterium phage psiM2 large terminase subunit SWALL:O80199 (EMBL:AF065411) (468 aa) fasta scores: E(): 3.9%2C 26.72 38d in 434 aa and Bacteriophage Felix 01 hypothetical 60.1 kDa protein SWALL:O80226 (EMBL:AF071201) (533 aa) fasta scores: E(): 0.17%2C 22.96 38d in 331 aa	gene	gene2284	http://www.ncbi.nlm.nih.gov/gene/?term=YE2325
YE2326	YE2326		YE2326	2530398	2530970	-	phage terminase%2C small subunit	Similar to Bacteriophage SF6%2C and Bacteriophage rho-15 terminase small subunit 1 SWALL:TERS_BPSF6 (SWALL:Q38627) (151 aa) fasta scores: E(): 0.011%2C 30.06 id in 163 aa and to Bacteriophage bIL310 terminase SWALL:Q9AZI3 (EMBL:AF323671) (147 aa) fasta scores: E(): 0.0017%2C 38.46 38d in 91 aa	gene	gene2285	http://www.ncbi.nlm.nih.gov/gene/?term=YE2326
YE2327	YE2327		YE2327	2530999	2531142	+	hypothetical protein	doubtful CDS with no significant database hits	gene	gene2286	http://www.ncbi.nlm.nih.gov/gene/?term=YE2327
YE2328	YE2328		YE2328	2531348	2531527	-	hypothetical protein	doubtful CDS with no significant database hits	gene	gene2287	http://www.ncbi.nlm.nih.gov/gene/?term=YE2328
YE2329	YE2329		YE2329	2531679	2532017	+	hypothetical protein	no significant database hits	gene	gene2288	http://www.ncbi.nlm.nih.gov/gene/?term=YE2329
YE2331	YE2331		YE2331	2532181	2532870	-	phage-like protein	weakly similar in parts to Pasteurella multocida hypothetical protein Pm1774 SWALL:Q9CK60 (EMBL:AE006214) (239 aa) fasta scores: E(): 8.7e-14%2C 31.55 38d in 206 aa and to Bacteriophage phi-80 hypothetical protein SWALL:Q38450 (EMBL:L40418) (184 aa) fasta scores: E(): 0.014%2C 24.54 38d in 110 aa	gene	gene2289	http://www.ncbi.nlm.nih.gov/gene/?term=YE2331
YE2333	YE2333		YE2333	2533506	2533898	-	phage exported protein	Similar to several phage proteins including: Bacteriophage APSE-1 putative protein P14 SWALL:VP14_BPAPS (SWALL:Q9T1T4) (129 aa) fasta scores: E(): 0.00022%2C 27.86 id in 122 aa%2C Bacteriophage SfV putative lytic protein RZ SWALL:Q8SBD9 (EMBL:U82619) (130 aa) fasta scores: E(): 6.7e-08%2C 35.29 38d in 102 aa and Salmonella typhi putative bacteriophage protein Sty2043 SWALL:Q8Z618 (EMBL:AL627272) (130 aa) fasta scores: E(): 2.2e-06%2C 32.35 38d in 102 aa	gene	gene2290	http://www.ncbi.nlm.nih.gov/gene/?term=YE2333
YE2334	YE2334		YE2334	2533883	2534365	-	phage lysozyme		gene	gene2291	http://www.ncbi.nlm.nih.gov/gene/?term=YE2334
YE2335	YE2335		YE2335	2534688	2535218	-	hypothetical protein	Weakly similar in parts to Escherichia coli O157:H7 hypothetical protein Z3935 or Ecs3504 SWALL:Q8X989 (EMBL:AE005493) (201 aa) fasta scores: E(): 1.2e-18%2C38.09 38d in 168 aa and to Bacteriophage phiYeO3-12 putative hypothetical protein SWALL:Q9T140 (EMBL:AJ251805) (157 aa) fasta scores: E(): 1.2e-07%2C 35.53 38d in 121 aa	gene	gene2292	http://www.ncbi.nlm.nih.gov/gene/?term=YE2335
YE2336	YE2336		YE2336	2535454	2535942	-	late gene antiterminator protein	Similar to Bacteriophage Nil2 late gene antiterminator Q SWALL:CAC95104 (EMBL:AJ413274) (162 aa) fasta scores: E(): 1.5e-46%2C 70.37 38d in 162 aa and to Bacteriophage 21 protein Q SWALL:Q9XJQ6 (EMBL:AJ237660) (161 aa) fasta scores: E(): 1e-42%2C 67.28 38d in 162 aa	gene	gene2293	http://www.ncbi.nlm.nih.gov/gene/?term=YE2336
YE2337	YE2337		YE2337	2535939	2536547	-	NinG-like phage protein	Similar to Bacteriophage lambda protein NinG SWALL:NING_LAMBD (SWALL:P03770) (204 aa) fasta scores: E(): 1.2e-15%2C 36.53 38d in 208 aa and to Bacteriophage P22 protein NinG SWALL:NING_BPP22 (SWALL:Q38667) (203 aa) fasta scores: E(): 9e-16%2C 36.09 38d in 205 aa	gene	gene2294	http://www.ncbi.nlm.nih.gov/gene/?term=YE2337
YE2339	YE2339		YE2339	2536905	2537351	-	NinB-like phage protein	Similar to Bacteriophage lambda protein NinB SWALL:NINB_LAMBD (SWALL:P03765) (146 aa) fasta scores: E(): 2.2e-27%2C 52.77 38d in 144 aa%2C and to Yersinia pestis KIM putative phage protein Y2223 SWALL:AAM85783 (EMBL:AE013825) (148 aa) fasta scores: E(): 7.5e-55%2C95.94 38d in 148 aa	gene	gene2295	http://www.ncbi.nlm.nih.gov/gene/?term=YE2339
YE2340	YE2340		YE2340	2537344	2537745	-	hypothetical protein	no significant database hits	gene	gene2296	http://www.ncbi.nlm.nih.gov/gene/?term=YE2340
YE2341	YE2341		YE2341	2537742	2538044	-	hypothetical protein	no significant database hits	gene	gene2297	http://www.ncbi.nlm.nih.gov/gene/?term=YE2341
YE2342	YE2342		YE2342	2538041	2538268	-	hypothetical protein	no significant database hits	gene	gene2298	http://www.ncbi.nlm.nih.gov/gene/?term=YE2342
YE2343	YE2343		YE2343	2538309	2538902	+	hypothetical protein	no significant database hits	gene	gene2299	http://www.ncbi.nlm.nih.gov/gene/?term=YE2343
YE2344	YE2344		YE2344	2539004	2539240	-	hypothetical protein	no significant database hits	gene	gene2300	http://www.ncbi.nlm.nih.gov/gene/?term=YE2344
YE2345	YE2345		YE2345	2539237	2539932	-	DNA replication protein	Similar to Bacteriophage lambda replication protein P SWALL:VRPP_LAMBD (SWALL:P03689) (233 aa) fasta scores: E(): 2.1e-31%2C 38.09 38d in 231 aa and to Bacteriophage 933W%2C and Stx2 converting bacteriophage I lambda replication protein P orthologue SWALL:O32558 (EMBL:Y10775) (233 aa) fasta scores: E(): 9.9e-32%2C 38.96 id in 231 aa	gene	gene2301	http://www.ncbi.nlm.nih.gov/gene/?term=YE2345
YE2346	YE2346		YE2346	2539929	2540828	-	DNA-binding phage protein	Similar to Salmonella typhimurium hypothetical 36.5 kDa protein SWALL:O84892 (EMBL:AF001386) (325 aa) fasta scores: E(): 6e-23%2C 54.96 38d in 131 aa and to Bacteriophage HK022 DNA replication o O SWALL:Q37929 (EMBL:U02466) (299 aa) fasta scores: E(): 2.8%2C 25.4 38d in 185 aa	gene	gene2302	http://www.ncbi.nlm.nih.gov/gene/?term=YE2346
YE2347	YE2347		YE2347	2540825	2541490	-	phage-like protein	Similar to Bacteriophage Mx8 hypothetical 25.3 kDa protein SWALL:O03965 (EMBL:U64984) (222 aa) fasta scores: E(): 4.4e-15%2C 34.71 38d in 242 aa and to Xylella fastidiosa phage-related protein xf0485 SWALL:Q9PG17 (EMBL:AE003898) (181 aa) fasta scores: E(): 2.5e-13%2C35.48 38d in 217 aa	gene	gene2303	http://www.ncbi.nlm.nih.gov/gene/?term=YE2347
YE2348	YE2348		YE2348	2541497	2541742	-	hypothetical protein	doubtful CDS with no significant database hits	gene	gene2304	http://www.ncbi.nlm.nih.gov/gene/?term=YE2348
YE2349	YE2349		YE2349	2541846	2542118	-	phage transcriptional regulator	Similar to Bacteriophage P22 transcriptional activator protein CI SWALL:RPC1_BPP22 (SWALL:P03041) (92 aa) fasta scores: E(): 8.5e-14%2C 52.8 38d in 89 aa and to Bacteriophage lambda regulatory protein cII SWALL:RPC2_LAMBD (SWALL:P03042) (97 aa) fasta scores: E(): 1.9e-11%2C 48.1 38d in 79 aa	gene	gene2305	http://www.ncbi.nlm.nih.gov/gene/?term=YE2349
YE2349A	YE2349A		YE2349A	2542234	2542458	-	phage transcriptional regulator		gene	gene2306	http://www.ncbi.nlm.nih.gov/gene/?term=YE2349A
YE2350	YE2350	cI	cI	2542568	2543167	+	repressor protein CI	Similar to Bacteriophage D3 repressor protein CI SWALL:RPC1_BPD3 (SWALL:Q37906) (223 aa) fasta scores: E(): 0.0013%2C 26.98 38d in 189 aa%2C and to Bacteriophage 434 repressor protein CI SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): 1.2%2C 29.87 38d in 77 aa	gene	gene2307	http://www.ncbi.nlm.nih.gov/gene/?term=YE2350
YE2351	YE2351		YE2351	2544069	2544380	-			gene	gene2308	http://www.ncbi.nlm.nih.gov/gene/?term=YE2351
YE2352	YE2352		YE2352	2544663	2545238	+	hypothetical protein	no significant database hits	gene	gene2309	http://www.ncbi.nlm.nih.gov/gene/?term=YE2352
YE2353	YE2353		YE2353	2545366	2545776	+	hypothetical protein	no significant database hits	gene	gene2310	http://www.ncbi.nlm.nih.gov/gene/?term=YE2353
YE2355	YE2355		YE2355	2546079	2546744	+	exodeoxyribonuclease X	3'-5' exonuclease activity on single or double-strand DNA	gene	gene2311	http://www.ncbi.nlm.nih.gov/gene/?term=YE2355
YE2356	YE2356		YE2356	2546744	2547409	+	phage ATP/GTP-binding protein	Similar to Bacteriophage HK620 hypothetical 25.6 kDa protein hkaL SWALL:Q9AZ29 (EMBL:AF335538) (226 aa) fasta scores: E(): 4.1e-47%2C 62.67 38d in 217 aa. Also weakly similar to Fusobacterium nucleatum DNA repair protein RadA fn0157 SWALL:Q8RGX0 (EMBL:AE010529) (452 aa) fasta scores: E(): 2.9%2C 21.17 38d in 222 aa	gene	gene2312	http://www.ncbi.nlm.nih.gov/gene/?term=YE2356
YE2357	YE2357		YE2357	2547409	2548086	+	hypothetical protein	Similar to Bacteriophage HK620 hypothetical 21.3 kDa protein HkaK SWALL:Q9AZ30 (EMBL:AF335538) (195 aa) fasta scores: E(): 1.2e-13%2C 37.43 38d in 179 aa	gene	gene2313	http://www.ncbi.nlm.nih.gov/gene/?term=YE2357
YE2358	YE2358		YE2358	2548482	2548850	+	hypothetical protein	Similar to Shigella sonnei plasmid hypothetical protein CjI SWALL:Q93Q54 (EMBL:AF282884) (129 aa) fasta scores: E(): 0.0038%2C 28.33 38d in 120 aa	gene	gene2314	http://www.ncbi.nlm.nih.gov/gene/?term=YE2358
YE2359	YE2359		YE2359	2549000	2549503	+	hypothetical protein	no significant database hits	gene	gene2315	http://www.ncbi.nlm.nih.gov/gene/?term=YE2359
YE2361	YE2361	dam	dam	2550161	2551021	+	adenine-specific modification methylase	Similar to Enterococcus faecalis MunI-like protein SWALL:Q9L8Z8 (EMBL:AF192329) (180 aa) fasta scores: E(): 3.3e-10%2C 40.19 38d in 204 aa and to Mycoplasma sp adenine-specific modification methylase MunI muniM SWALL:MTMU_MYCSP (SWALL:P43641) (233 aa) fasta scores: E(): 4.5e-05%2C 29.43 38d in 231 aa	gene	gene2316	http://www.ncbi.nlm.nih.gov/gene/?term=YE2361
YE2362	YE2362	dcm	dcm	2551018	2552763	+	cytosine-specific modification methylase	Similar to Bacteriophage phi-H cytosine methylase Dcm5A SWALL:Q38204 (EMBL:X80164) (245 aa) fasta scores: E(): 3.5e-14%2C 33.99 38d in 253 aa and to Rhizobium loti modification methylase Mlr8517 SWALL:Q982S6 (EMBL:AP003014) (667 aa) fasta scores: E(): 2.4e-27%2C35.97 38d in 656 aa	gene	gene2317	http://www.ncbi.nlm.nih.gov/gene/?term=YE2362
YE2363	YE2363		YE2363	2553100	2553348	+	phage excisionase		gene	gene2318	http://www.ncbi.nlm.nih.gov/gene/?term=YE2363
YE2364	YE2364	int	int	2553376	2554665	+	phage integrase		gene	gene2319	http://www.ncbi.nlm.nih.gov/gene/?term=YE2364
YE2365	YE2365		YE2365	2554690	2555136	-	hypothetical protein		gene	gene2320	http://www.ncbi.nlm.nih.gov/gene/?term=YE2365
YE2366	YE2366		YE2366	2555251	2555907	-	hypothetical protein		gene	gene2321	http://www.ncbi.nlm.nih.gov/gene/?term=YE2366
YE2367	YE2367		YE2367	2555988	2556911	-	lipoprotein		gene	gene2322	http://www.ncbi.nlm.nih.gov/gene/?term=YE2367
YE2368	YE2368		YE2368	2557100	2557372	-	hypothetical protein		gene	gene2323	http://www.ncbi.nlm.nih.gov/gene/?term=YE2368
YE2370	YE2370		YE2370	2557576	2557941	-	hypothetical protein	no significant database hits. Note that this CDS is rich in the amino acids Gln%2C Lys%2C Ala and Ser	gene	gene2324	http://www.ncbi.nlm.nih.gov/gene/?term=YE2370
YE2371	YE2371	minC	minC	2558490	2559176	+	septum formation inhibitor	blocks the formation of polar Z-ring septums	gene	gene2325	http://www.ncbi.nlm.nih.gov/gene/?term=YE2371
YE2372	YE2372	minD	minD	2559202	2560014	+	cell division inhibitor MinD	ATPase%3B with MinC inhibits cell division by blocking formation of the polar Z ring septums	gene	gene2326	http://www.ncbi.nlm.nih.gov/gene/?term=YE2372
YE2373	YE2373	minE	minE	2560018	2560287	+	cell division topological specificity factor MinE	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell	gene	gene2327	http://www.ncbi.nlm.nih.gov/gene/?term=YE2373
YE2374	YE2374	rnd	rnd	2560426	2561547	-	ribonuclease D		gene	gene2328	http://www.ncbi.nlm.nih.gov/gene/?term=YE2374
YE2375	YE2375	fadD	fadD	2561645	2563339	-	long-chain-fatty-acid--CoA ligase	Activates fatty acids by binding to coenzyme A	gene	gene2329	http://www.ncbi.nlm.nih.gov/gene/?term=YE2375
YE2376	YE2376		YE2376	2563680	2564231	-	lipoprotein		gene	gene2330	http://www.ncbi.nlm.nih.gov/gene/?term=YE2376
YE2377	YE2377		YE2377	2564392	2565090	-	hypothetical protein		gene	gene2331	http://www.ncbi.nlm.nih.gov/gene/?term=YE2377
YE2378	YE2378		YE2378	2565165	2566991	-	DEAD/DEAH box helicase		gene	gene2332	http://www.ncbi.nlm.nih.gov/gene/?term=YE2378
YE2379	YE2379		YE2379	2567198	2567542	+	hypothetical protein		gene	gene2333	http://www.ncbi.nlm.nih.gov/gene/?term=YE2379
YE2380	YE2380		YE2380	2567675	2567965	-	multidrug efflux system protein MdtI	with MdtJ is involved in resistance to deoxycholate%2C nalidixic acid%2C fosfomycin%2C and SDS	gene	gene2334	http://www.ncbi.nlm.nih.gov/gene/?term=YE2380
YE2381	YE2381		YE2381	2567991	2568371	-	inner membrane protein	Similar to many other putative membrane integral proteins including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YdgF or b1600 or z2594 or ecs2306 SWALL:YDGF_ECOLI (SWALL:P77412) (121 aa) fasta scores: E(): 4.8e-25%2C 72.32 38d in 112 aa%2C Pseudomonas aeruginosa probable drug efflux transporter pa1541 SWALL:Q9I3H2 (EMBL:AE004582) (122 aa) fasta scores: E(): 4.4e-18%2C 52.5 38d in 120 aa and Rhizobium meliloti putative multidrug transmembrane resistance signal peptide protein R01614 or Smc01179 SWALL:Q92PW0 (EMBL:AL591787) (114 aa) fasta scores: E(): 5.5e-14%2C 48.57 38d in 105 aa	gene	gene2335	http://www.ncbi.nlm.nih.gov/gene/?term=YE2381
YE2382	YE2382	eda	eda	2568967	2569608	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate%3B or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate	gene	gene2336	http://www.ncbi.nlm.nih.gov/gene/?term=YE2382
YE2383	YE2383	zwf	zwf	2569863	2571347	-	glucose-6-phosphate 1-dehydrogenase	catalyzes the formation of D-glucono-1%2C5-lactone 6-phosphate from D-glucose 6-phosphate	gene	gene2337	http://www.ncbi.nlm.nih.gov/gene/?term=YE2383
YE2384	YE2384	hexR	hexR	2571700	2572569	+	DNA-binding transcriptional regulator HexR	Represses the expression of the zwf%2C eda%2C glp and gap	gene	gene2338	http://www.ncbi.nlm.nih.gov/gene/?term=YE2384
YE2385	YE2385	pykA	pykA	2572789	2574231	+	pyruvate kinase	catalyzes the formation of phosphoenolpyruvate from pyruvate	gene	gene2339	http://www.ncbi.nlm.nih.gov/gene/?term=YE2385
YE2386	YE2386	msbB	msbB	2574322	2575284	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	Transfers myristate or laurate%2C activated on ACP%2C to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA	gene	gene2340	http://www.ncbi.nlm.nih.gov/gene/?term=YE2386
YE2387	YE2387		YE2387	2575368	2576621	-	hypothetical protein		gene	gene2341	http://www.ncbi.nlm.nih.gov/gene/?term=YE2387
YE2388	YE2388	znuA	znuA	2576699	2577661	-	high-affinity zinc transporter substrate-binding protein	involved in transport of zinc(II) with ZnuA and C	gene	gene2342	http://www.ncbi.nlm.nih.gov/gene/?term=YE2388
YE2389	YE2389	znuC	znuC	2577737	2578495	+	high-affinity zinc transporter ATPase	involved in transport of zinc(II) with ZnuA and C	gene	gene2343	http://www.ncbi.nlm.nih.gov/gene/?term=YE2389
YE2390	YE2390	znuB	znuB	2578492	2579277	+	high-affinity zinc transporter membrane protein	involved in transport of zinc(II) with ZnuA and C	gene	gene2344	http://www.ncbi.nlm.nih.gov/gene/?term=YE2390
YE2391	YE2391		YE2391	2579738	2581219	+	inner membrane transporter YhiP	member of the POT family of peptide transporters%3B probable proton-dependent peptide transporter function	gene	gene2345	http://www.ncbi.nlm.nih.gov/gene/?term=YE2391
YE2392	YE2392	ruvB	ruvB	2581270	2582274	-	Holliday junction DNA helicase RuvB	promotes strand exchange during homologous recombination%3B RuvAB complex promotes branch migration%3B RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences%3B forms hexameric rings around opposite DNA arms%3B requires ATP for branch migration and orientation of RuvAB complex determines direction of migration	gene	gene2346	http://www.ncbi.nlm.nih.gov/gene/?term=YE2392
YE2393	YE2393	ruvA	ruvA	2582310	2582927	-	Holliday junction DNA helicase RuvA	plays an essential role in ATP-dependent branch migration of the Holliday junction	gene	gene2347	http://www.ncbi.nlm.nih.gov/gene/?term=YE2393
YE2394	YE2394	ruvC	ruvC	2583050	2583571	-	Holliday junction resolvase	endonuclease%3B resolves Holliday structures%3B forms a complex of RuvABC%3B the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration%3B RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity	gene	gene2348	http://www.ncbi.nlm.nih.gov/gene/?term=YE2394
YE2395	YE2395		YE2395	2583739	2584482	-	hypothetical protein		gene	gene2349	http://www.ncbi.nlm.nih.gov/gene/?term=YE2395
YE2396	YE2396	ntpA	ntpA	2584623	2585045	-	dATP pyrophosphohydrolase	converts dATP to dAMP and pyrophosphate	gene	gene2350	http://www.ncbi.nlm.nih.gov/gene/?term=YE2396
YE2397	YE2397	aspS	aspS	2585205	2587001	-	aspartyl-tRNA synthetase	catalyzes a two-step reaction%2C first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B contains discriminating and non-discriminating subtypes	gene	gene2351	http://www.ncbi.nlm.nih.gov/gene/?term=YE2397
YE2398	YE2398		YE2398	2587549	2588145	+	hypothetical protein	Similar to many proposed isochorismatases including: Salmonella typhimurium%2C and Salmonella typhi putative isochorismatase YecD or Stm1902 or Sty2110 SWALL:Q8XEW8 (EMBL:AE008785) (188 aa) fasta scores: E(): 2.1e-46%2C 66.13 38d in 189 aa and to Escherichia coli%2C and Escherichia coli O157:H7 hypothetical isochorismatase family protein YecD or b1867 or z2920 or ecs2577 SWALL:YECD_ECOLI (SWALL:P37347) (199 aa) fasta scores: E(): 8.2e-46%2C 65.6 38d in 189 aa	gene	gene2352	http://www.ncbi.nlm.nih.gov/gene/?term=YE2398
YE2399	YE2399		YE2399	2588193	2589008	+	hypothetical protein		gene	gene2353	http://www.ncbi.nlm.nih.gov/gene/?term=YE2399
YE2400	YE2400		YE2400	2589200	2589595	+	hypothetical protein		gene	gene2354	http://www.ncbi.nlm.nih.gov/gene/?term=YE2400
YE2401	YE2401		YE2401	2589884	2590585	+	hypothetical protein		gene	gene2355	http://www.ncbi.nlm.nih.gov/gene/?term=YE2401
YE2402	YE2402		YE2402	2590582	2591553	+	hypothetical protein		gene	gene2356	http://www.ncbi.nlm.nih.gov/gene/?term=YE2402
YE2403	YE2403	cutC	cutC	2591613	2592377	-	copper homeostasis protein CutC		gene	gene2357	http://www.ncbi.nlm.nih.gov/gene/?term=YE2403
YE2404	YE2404		YE2404	2592619	2593179	-	hypothetical protein		gene	gene2358	http://www.ncbi.nlm.nih.gov/gene/?term=YE2404
YE2406	YE2406	argS	argS	2593550	2595280	+	arginyl-tRNA synthetase	catalyzes a two-step reaction%2C first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class-I aminoacyl-tRNA synthetase	gene	gene2359	http://www.ncbi.nlm.nih.gov/gene/?term=YE2406
YE2407	YE2407		YE2407	2595338	2600218	-	hemolysin		gene	gene2360	http://www.ncbi.nlm.nih.gov/gene/?term=YE2407
YE2408	YE2408		YE2408	2600399	2602066	-	hemolysin activator protein		gene	gene2361	http://www.ncbi.nlm.nih.gov/gene/?term=YE2408
YE2409	YE2409	mviN	mviN	2602499	2604034	-	hypothetical protein		gene	gene2362	http://www.ncbi.nlm.nih.gov/gene/?term=YE2409
YE2410	YE2410	mviM	mviM	2604172	2605131	-	virulence factor MviM		gene	gene2363	http://www.ncbi.nlm.nih.gov/gene/?term=YE2410
YE2410a	YE2410a		YE2410a	2605124	2605765	-	hypothetical protein		gene	gene2364	http://www.ncbi.nlm.nih.gov/gene/?term=YE2410a
YE2412	YE2412	rimJ	rimJ	2605773	2606357	-	ribosomal-protein-S5-alanine N-acetyltransferase		gene	gene2365	http://www.ncbi.nlm.nih.gov/gene/?term=YE2412
YE2414	YE2414		YE2414	2606977	2607768	+			gene	gene2366	http://www.ncbi.nlm.nih.gov/gene/?term=YE2414
YE2416	YE2416		YE2416	2607780	2608097	-	inner membrane protein	Similar to Clostridium perfringens hypothetical protein Cpe0255 SWALL:Q8XNS7 (EMBL:AP003186) (104 aa) fasta scores: E(): 9%2C 28.71 38d in 101 aa	gene	gene2367	http://www.ncbi.nlm.nih.gov/gene/?term=YE2416
YE2418	YE2418		YE2418	2608774	2609979	+	multidrug resistance protein MdtH	Confers resistance to norfloxacin and enoxacin	gene	gene2368	http://www.ncbi.nlm.nih.gov/gene/?term=YE2418
YE2419	YE2419		YE2419	2610197	2610760	+	hypothetical protein		gene	gene2369	http://www.ncbi.nlm.nih.gov/gene/?term=YE2419
YE2420	YE2420		YE2420	2610798	2611361	-	hypothetical protein		gene	gene2370	http://www.ncbi.nlm.nih.gov/gene/?term=YE2420
YE2421	YE2421		YE2421	2611424	2612161	-	hydrolase		gene	gene2371	http://www.ncbi.nlm.nih.gov/gene/?term=YE2421
YE2422	YE2422		YE2422	2612310	2613251	-	oxidoreductase	Similar to Salmonella typhi putative 2-hydroxyacid dehydrogenase in Sty1172 SWALL:Q8Z7M6 (EMBL:AL627269) (312 aa) fasta scores: E(): 2.4e-66%2C 55.73 38d in 314 aa and to Escherichia coli putative 2-hydroxyacid dehydrogenase YcdW or b1033 SWALL:YCDW_ECOLI (SWALL:P75913) (325 aa) fasta scores: E(): 7.9e-66%2C 54.95 38d in 313 aa	gene	gene2372	http://www.ncbi.nlm.nih.gov/gene/?term=YE2422
YE2423	YE2423		YE2423	2613769	2614653	+	hypothetical protein		gene	gene2374	http://www.ncbi.nlm.nih.gov/gene/?term=YE2423
YE2425	YE2425		YE2425	2614957	2616072	-	inner membrane protein	Similar to many proteins of undefined function including: Listeria monocytogenes hypothetical protein Lmo2174 SWALL:Q8Y595 (EMBL:AL591982) (357 aa) fasta scores: E(): 2e-17%2C 31.59 38d in 345 aa and to Aquifex aeolicus hypothetical protein Aq_035 SWALL:O66451 (EMBL:AE000670) (431 aa) fasta scores: E(): 1.1e-16%2C30.85 38d in 269 aa	gene	gene2376	http://www.ncbi.nlm.nih.gov/gene/?term=YE2425
YE2426	YE2426		YE2426	2616627	2618324	+	sulfate transporter YchM	putative role in sulfate transport across the inner membrane%3B member of the SulP family of sulfate transporters%3B seems to mediate transport via sulfate/proton symport	gene	gene2377	http://www.ncbi.nlm.nih.gov/gene/?term=YE2426
YE2427	YE2427	kdsA	kdsA	2618400	2619254	-	2-dehydro-3-deoxyphosphooctonate aldolase	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis	gene	gene2378	http://www.ncbi.nlm.nih.gov/gene/?term=YE2427
YE2428	YE2428		YE2428	2619395	2620204	-	transcriptional regulator		gene	gene2379	http://www.ncbi.nlm.nih.gov/gene/?term=YE2428
YE2429	YE2429		YE2429	2620201	2620602	-	hypothetical protein		gene	gene2380	http://www.ncbi.nlm.nih.gov/gene/?term=YE2429
YE2430	YE2430		YE2430	2620620	2621474	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase	HemK%3B PrmC%3B transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB	gene	gene2381	http://www.ncbi.nlm.nih.gov/gene/?term=YE2430
YE2431	YE2431	prfA	prfA	2621474	2622556	-	peptide chain release factor 1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1%3B this protein is similar to release factor 2	gene	gene2382	http://www.ncbi.nlm.nih.gov/gene/?term=YE2431
YE2432	YE2432	hemA	hemA	2622588	2623850	-	glutamyl-tRNA reductase	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH%3B the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid%3B functions in porphyrin (tetrapyrroles) biosynthesis%3B the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins	gene	gene2383	http://www.ncbi.nlm.nih.gov/gene/?term=YE2432
YE2433	YE2433	lolB	lolB	2624155	2624778	+	outer membrane lipoprotein LolB	Incorporates lipoproteins in the outer membrane after they are released by the LolA protein	gene	gene2384	http://www.ncbi.nlm.nih.gov/gene/?term=YE2433
YE2434	YE2434	ipk	ipk	2624822	2625661	+	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis	gene	gene2385	http://www.ncbi.nlm.nih.gov/gene/?term=YE2434
YE2435	YE2435	prs	prs	2625859	2626806	+	ribose-phosphate pyrophosphokinase	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP	gene	gene2386	http://www.ncbi.nlm.nih.gov/gene/?term=YE2435
YE2436	YE2436		YE2436	2627161	2627433	-	hypothetical protein	YchH%3B transcription activated by CRP (cyclic AMP receptor protein)%2C a global transcription factor involved in regulation of metabolism in enteric bacteria%3B ychH presents a class II promoter to bind CRP%3B unknown function	gene	gene2387	http://www.ncbi.nlm.nih.gov/gene/?term=YE2436
YE2437	YE2437	pth	pth	2627765	2628358	+	peptidyl-tRNA hydrolase	Enables the recycling of peptidyl-tRNAs produced at termination of translation	gene	gene2388	http://www.ncbi.nlm.nih.gov/gene/?term=YE2437
YE2438	YE2438		YE2438	2628413	2628871	-	hypothetical protein	no significant database hits	gene	gene2389	http://www.ncbi.nlm.nih.gov/gene/?term=YE2438
YE2439	YE2439	ychF	ychF	2629139	2630230	+	GTP-dependent nucleic acid-binding protein EngD	translation-associated GTPase%3B the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3)%3B fluorescence spectroscopy revealed nucleic acid binding%3B the yeast protein YBR025c interacts with the translation elongation factor eEF1	gene	gene2390	http://www.ncbi.nlm.nih.gov/gene/?term=YE2439
YE2440	YE2440	ampC	ampC	2630376	2631542	-	beta-lactamase	Previously sequenced: Yersinia enterocolitica beta-lactamase precursor AmpC SWALL:AMPC_YEREN (SWALL:P45460) (388 aa) fasta scores: E(): 1.5e-150%2C97.93 38d in 388 aa%2C and to Citrobacter freundii beta-lactamase precursor blaC SWALL:Q59276 (EMBL:D13207) (381 aa) fasta scores: E(): 8.1e-87%2C 56.95 38d in 388 aa	gene	gene2391	http://www.ncbi.nlm.nih.gov/gene/?term=YE2440
YE2441	YE2441	ampR	ampR	2631677	2632561	+	transcriptional activator protein	Previously sequenced: Yersinia enterocolitica transcriptional activator protein AmpR SWALL:AMPR_YEREN (SWALL:P45461) (294 aa) fasta scores: E(): 5.2e-104%2C91.55 38d in 296 aa.Also highly similar to Enterobacter cloacae AmpR protein SWALL:O83025 (EMBL:AB016612) (291 aa) fasta scores: E(): 1.2e-83%2C 70.69 38d in 290 aa	gene	gene2392	http://www.ncbi.nlm.nih.gov/gene/?term=YE2441
YE2442	YE2442		YE2442	2632668	2633324	-	inner membrane protein	Similar to Escherichia coli hypothetical protein YebE or b1846 SWALL:YEBE_ECOLI (SWALL:P33218) (219 aa) fasta scores: E(): 2.6e-55%2C 67.58 38d in 219 aa%2CSalmonella typhimurium putative inner membrane protein YebE or Stm1880 SWALL:Q8ZNW8 (EMBL:AE008783) (219 aa) fasta scores: E(): 1.4e-54%2C 67.28 38d in 217 aa. Previously partially sequenced as: Yersinia enterocolitica hypothetical protein in ampR 5'region SWALL:YEBE_YEREN (SWALL:P45462) (139 aa) fasta scores: E(): 2.3e-46%2C 95.68 id in 139 aa	gene	gene2393	http://www.ncbi.nlm.nih.gov/gene/?term=YE2442
YE2444	YE2444		YE2444	2634101	2634670	+	hypothetical protein	no significant database hits	gene	gene2394	http://www.ncbi.nlm.nih.gov/gene/?term=YE2444
YE2445	YE2445		YE2445	2634688	2635907	-			gene	gene2395	http://www.ncbi.nlm.nih.gov/gene/?term=YE2445
YE2447	YE2447		YE2447	2635919	2636509	-	type III secreted effector protein	Highly similar to Shigella flexneri%2C and Shigella flexneri 2a OspG%2C secreted by the Mxi-Spa type III secretion machinery%2C function unknown ospg or s0237 SWALL:Q99PZ6 (EMBL:AL391753) (196 aa) fasta scores: E(): 1e-67%2C 91.32 38d in 196 aa	gene	gene2396	http://www.ncbi.nlm.nih.gov/gene/?term=YE2447
YE2448	YE2448	agaR	agaR	2636942	2637751	-	DNA-binding transcriptional regulator AgaR	transcriptional repressor for the agaZVWA and agaSYBCDI operons	gene	gene2397	http://www.ncbi.nlm.nih.gov/gene/?term=YE2448
YE2449	YE2449	agaS	agaS	2638092	2638526	+			gene	gene2398	http://www.ncbi.nlm.nih.gov/gene/?term=YE2449
YE2450	YE2450	agaY	agaY	2638539	2638949	+			gene	gene2399	http://www.ncbi.nlm.nih.gov/gene/?term=YE2450
YE2451	YE2451		YE2451	2639222	2639968	+	lipoprotein	Similar to Escherichia coli O157:H7 putative lipoprotein Ecs3738 SWALL:Q8X2T2 (EMBL:AP002563) (259 aa) fasta scores: E(): 4.3e-52%2C 64.4 38d in 236 aa and to Escherichia coli hypothetical lipoprotein YgeR precursor or b2865 SWALL:YGER_ECOLI (SWALL:Q46798) (251 aa) fasta scores: E(): 1.3e-51%2C 63.98 38d in 236 aa	gene	gene2400	http://www.ncbi.nlm.nih.gov/gene/?term=YE2451
YE2452	YE2452		YE2452	2640103	2640889	+			gene	gene2401	http://www.ncbi.nlm.nih.gov/gene/?term=YE2452
YE2454	YE2454		YE2454	2640954	2641592	-	hypothetical protein		gene	gene2402	http://www.ncbi.nlm.nih.gov/gene/?term=YE2454
YE2455	YE2455		YE2455	2641862	2642227	-	hypothetical protein	Weakly similar in parts to Bordetella bronchiseptica pertactin Prn SWALL:Q9ALQ0 (EMBL:AY007267) (256 aa) fasta scores: E(): 0.032%2C 35.21 38d in 71 aa	gene	gene2403	http://www.ncbi.nlm.nih.gov/gene/?term=YE2455
YE2457	YE2457		YE2457	2642538	2643197	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty1858 SWALL:Q8Z6C9 (EMBL:AL627271) (216 aa) fasta scores: E(): 7e-49%2C 56.33 38d in 213 aa and to Escherichia coli hypothetical protein YodA or b1973 SWALL:YODA_ECOLI (SWALL:P76344) (216 aa) fasta scores: E(): 5.2e-47%2C 54.33 id in 219 aa	gene	gene2404	http://www.ncbi.nlm.nih.gov/gene/?term=YE2457
YE2458	YE2458		YE2458	2643393	2643965	-	hypothetical protein		gene	gene2405	http://www.ncbi.nlm.nih.gov/gene/?term=YE2458
YE2459	YE2459		YE2459	2643965	2645335	-	N-formimino-L-glutamate deiminase	catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate	gene	gene2406	http://www.ncbi.nlm.nih.gov/gene/?term=YE2459
YE2460	YE2460	hutC	hutC	2645484	2646251	+	GntR family transcriptional regulator		gene	gene2407	http://www.ncbi.nlm.nih.gov/gene/?term=YE2460
YE2461	YE2461	hutI	hutI	2646387	2647607	+	imidazolonepropionase	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate%2C the third step in the histidine degradation pathway	gene	gene2408	http://www.ncbi.nlm.nih.gov/gene/?term=YE2461
YE2462	YE2462	hutG	hutG	2647604	2648413	+	N-formylglutamate amidohydrolase		gene	gene2409	http://www.ncbi.nlm.nih.gov/gene/?term=YE2462
YE2463	YE2463		YE2463	2648536	2649618	-	outer membrane porin protein	Highly similar to many outermembrane porins including: Escherichia coli outer membrane porin protein NmpC precursor or Phma or b0553 SWALL:NMPC_ECOLI (SWALL:P21420) (365 aa) fasta scores: E(): 2.9e-74%2C 57.64 id in 373 aa%2C Yersinia pestis similar to ompf SWALL:Q9ZC71 (EMBL:AL031866) (315 aa) fasta scores: E(): 1e-90%2C 81.16 id in 292 aa and to Bacteriophage PA-2 outer membrane porin protein LC precursor SWALL:PORI_BPPA2 (SWALL:P07238) (365 aa) fasta scores: E(): 6e-75%2C 57.9 38d in 373 aa	gene	gene2410	http://www.ncbi.nlm.nih.gov/gene/?term=YE2463
YE2465	YE2465	astE	astE	2650344	2651336	-	succinylglutamate desuccinylase	catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism	gene	gene2411	http://www.ncbi.nlm.nih.gov/gene/?term=YE2465
YE2466	YE2466	astB	astB	2651401	2652744	-	succinylarginine dihydrolase	catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine%2C ammonia and carbon dioxide in arginine degradation	gene	gene2412	http://www.ncbi.nlm.nih.gov/gene/?term=YE2466
YE2467	YE2467	astD	astD	2652787	2654253	-	succinylglutamic semialdehyde dehydrogenase	a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity%3B converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH	gene	gene2413	http://www.ncbi.nlm.nih.gov/gene/?term=YE2467
YE2468	YE2468	astA	astA	2654265	2655302	-	arginine succinyltransferase		gene	gene2414	http://www.ncbi.nlm.nih.gov/gene/?term=YE2468
YE2469	YE2469	argM	argM	2655360	2656604	-	bifunctional succinylornithine transaminase/acetylornithine transaminase	catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate%3B also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate	gene	gene2415	http://www.ncbi.nlm.nih.gov/gene/?term=YE2469
YE2470	YE2470		YE2470	2657213	2658646	-	GntR family transcriptional regulator		gene	gene2416	http://www.ncbi.nlm.nih.gov/gene/?term=YE2470
YE2471	YE2471		YE2471	2658831	2660279	+	cytochrome oxidase subunit	Similar to Pseudomonas aeruginosa cyanide insensitive terminal oxidase CioA or Pa3930 SWALL:O07440 (EMBL:Y10528) (488 aa) fasta scores: E(): 5.8e-155%2C 78.39 id in 486 aa%2C Salmonella typhimurium cytochrome Bd2 subunit I Stm0360 SWALL:Q8ZRG3 (EMBL:AE008712) (467 aa) fasta scores: E(): 4.2e-144%2C 77.22 38d in 461 aa and to Bacillus subtilis cytochrome D ubiquinol oxidase subunit I CydA SWALL:CYDA_BACSU (SWALL:P94364) (468 aa) fasta scores: E(): 1e-53%2C 36.54 38d in 446 aa	gene	gene2417	http://www.ncbi.nlm.nih.gov/gene/?term=YE2471
YE2472	YE2472		YE2472	2660282	2661289	+	cytochrome oxidase subunit	Similar to Pseudomonas aeruginosa cyanide insensitive terminal oxidase CioB or Pa3929 SWALL:O07441 (EMBL:Y10528) (335 aa) fasta scores: E(): 2.4e-99%2C 73.43 id in 335 aa%2C Salmonella typhimurium cytochrome Bd2 subunit II Stm0361 SWALL:Q8ZRG2 (EMBL:AE008712) (336 aa) fasta scores: E(): 5.8e-90%2C 68.15 38d in 336 aa%2C and to Bacillus subtilis cytochrome d ubiquinol oxidase subunit ii cydB SWALL:CYDB_BACSU (SWALL:P94365) (338 aa) fasta scores: E(): 2.9e-22%2C 26.76 38d in 340 aa	gene	gene2418	http://www.ncbi.nlm.nih.gov/gene/?term=YE2472
YE2473	YE2473	narR	narR	2661522	2663303	+	nitrate/nitrite sensor protein NarX		gene	gene2419	http://www.ncbi.nlm.nih.gov/gene/?term=YE2473
YE2474	YE2474		YE2474	2663341	2664297	-	transcriptional regulator CysB-like protein	Similar to Escherichia coli transcriptional regulator Cbl or b1987 SWALL:CBL_ECOLI (SWALL:Q47083) (316 aa) fasta scores: E(): 3.5e-83%2C 67.61 38d in 318 aa and to Klebsiella aerogenes transcriptional regulator Cbl SWALL:CBL_KLEAE (SWALL:Q08598) (316 aa) fasta scores: E(): 7.2e-83%2C 68.55 38d in 318 aa	gene	gene2420	http://www.ncbi.nlm.nih.gov/gene/?term=YE2474
YE2475	YE2475		YE2475	2664665	2665831	+	membrane transport protein	Similar to many putative membrane transport proteins including: Yersinia pestis putative sugar transport protein Ypo0798 SWALL:Q8ZHT6 (EMBL:AJ414144) (386 aa) fasta scores: E(): 6.8e-68%2C 53.88 38d in 373 aa%2CEscherichia coli protein precursor AraJ or b0396 SWALL:ARAJ_ECOLI (SWALL:P23910) (394 aa) fasta scores: E(): 2.8e-39%2C 32.56 38d in 390 aa and to Streptomyces lividans chloramphenicol resistance protein CmlR SWALL:CMLR_STRLI (SWALL:P31141) (392 aa) fasta scores: E(): 1.8e-32%2C 33.59 38d in 387 aa	gene	gene2421	http://www.ncbi.nlm.nih.gov/gene/?term=YE2475
YE2476	YE2476		YE2476	2666020	2666856	+	hypothetical protein	Similar to several proteins involved in iron acquisition: Vibrio vulnificus vulnibactin utilization protein ViuB SWALL:VIUB_VIBVU (SWALL:Q56743) (271 aa) fasta scores: E(): 2.9e-29%2C 36.26 38d in 262 aa%2C and to Stigmatella aurantiaca MxcB SWALL:Q9F641 (EMBL:AF299336) (270 aa) fasta scores: E(): 2.3e-22%2C 31.93 38d in 263 aa	gene	gene2422	http://www.ncbi.nlm.nih.gov/gene/?term=YE2476
YE2477	YE2477	chaA	chaA	2667076	2668185	+	calcium/sodium:proton antiporter		gene	gene2423	http://www.ncbi.nlm.nih.gov/gene/?term=YE2477
YE2478	YE2478	phoH	phoH	2668285	2669073	-	hypothetical protein		gene	gene2424	http://www.ncbi.nlm.nih.gov/gene/?term=YE2478
YE2480	YE2480		YE2480	2669606	2670313	-	acetyltransferase	Similar to Yersinia pestis hypothetical 27.4 kDa protein Ypo1955 SWALL:Q9ZC61 (EMBL:AL031866) (299 aa) fasta scores: E(): 2.2e-82%2C 80.17 38d in 232 aa.Note the extended N-terminus of the Y. pestis protein. It appears that Y. pestis has an extra segment of sequence at this point. This may have been an insertion in Y. pestis or a deletion from Y. enterocolitica. This is true for Y. pestis strains CO92 and KIM5. Also similar to Brucella suis 1330 acetyltransferase%2C GnaT family Bra0091 SWALL:AAN33301 (EMBL:AE014513) (225 aa) fasta scores: E(): 1.9e-40%2C 45.45 38d in 220 aa and to Brucella melitensis ribosomal-protein-serine acetyltransferase Bmeii0002 SWALL:Q8YE16 (EMBL:AE009639) (242 aa) fasta scores: E(): 2.8e-40%2C 44.69 38d in 226 aa	gene	gene2425	http://www.ncbi.nlm.nih.gov/gene/?term=YE2480
YE2481	YE2481	hmsS	hmsS	2670529	2670996	-	hemin storage system protein	in Yersinia this gene is involved in biofilm formation and hemin adsorption	gene	gene2426	http://www.ncbi.nlm.nih.gov/gene/?term=YE2481
YE2482	YE2482	hmsR	hmsR	2670993	2672327	-	N-glycosyltransferase	predicted polysaccharide polymerase involved in biofilm formation%3B in Escherichia coli the related protein PgaC is required for the synthesis of the beta-1%2C6-N-acetylglucosamine polysaccharide%3B in Yersinia the HmsR protein is an inner membrane protein	gene	gene2427	http://www.ncbi.nlm.nih.gov/gene/?term=YE2482
YE2483	YE2483	hmsF	hmsF	2672317	2674341	-	outer membrane N-deacetylase	in Yersinia this protein is involved in biofilm formation and hemin adsorption%3B related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1%2C6-N-acetyl-D-glucosamine (PGA) export	gene	gene2428	http://www.ncbi.nlm.nih.gov/gene/?term=YE2483
YE2484	YE2484	hmsH	hmsH	2674353	2676821	-	outer membrane protein	in Yersinia this protein is important for biofilm  formation and hemin adsorption	gene	gene2429	http://www.ncbi.nlm.nih.gov/gene/?term=YE2484
YE2485	YE2485		YE2485	2677500	2678717	-	endopeptidase		gene	gene2430	http://www.ncbi.nlm.nih.gov/gene/?term=YE2485
YE2486	YE2486		YE2486	2678768	2679535	-	ferric hydroximate transport ferric iron reductase		gene	gene2431	http://www.ncbi.nlm.nih.gov/gene/?term=YE2486
YE2487	YE2487		YE2487	2679693	2680319	-	hypothetical protein	Similar to several Eukaryotic and Prokaryotic proteins including: Mus musculus hypothetical protein Mgc2744 SWALL:Q99JS9 (EMBL:BC005711) (412 aa) fasta scores: E(): 1.4e-08%2C 31.12 38d in 196 aa and to Pyrococcus furiosus partial alanyl-tRNA synthetase matches COOH terminus Pf0086 SWALL:AAL80210 (EMBL:AE010135) (214 aa) fasta scores: E(): 1.5e-08%2C 28.78 38d in 205 aa	gene	gene2432	http://www.ncbi.nlm.nih.gov/gene/?term=YE2487
YE2488	YE2488		YE2488	2680409	2681341	+	Lys family transcriptional regulator	Similar to many Lys-family transcriptioanl regulators including: Klebsiella pneumoniae probable transcriptional regulator LtrA SWALL:LTRA_KLEPN (SWALL:P52689) (309 aa) fasta scores: E(): 1.2e-65%2C 58.36 id in 293 aa%2C and to Vibrio cholerae transcriptional regulator%2C lysr family vca0889 SWALL:Q9KL59 (EMBL:AE004416) (312 aa) fasta scores: E(): 3.4e-47%2C44.14 38d in 299 aa	gene	gene2433	http://www.ncbi.nlm.nih.gov/gene/?term=YE2488
YE2489	YE2489	tehB	tehB	2681392	2682261	-	tellurite resistance protein TehB	with TehA confers resistance to tellurite	gene	gene2434	http://www.ncbi.nlm.nih.gov/gene/?term=YE2489
YE2490	YE2490		YE2490	2682406	2682720	-	cytochrome	Similar to Helicobacter pylori J99 cytochrome C-553 precursor jhp1148 SWALL:C553_HELPJ (SWALL:Q9ZJZ9) (96 aa) fasta scores: E(): 0.0035%2C 34.69 38d in 98 aa and to Yersinia pestis putative cytochrome Ypo1948 SWALL:Q8ZF20 (EMBL:AJ414150) (103 aa) fasta scores: E(): 1.7e-28%2C 79.8 id in 104 aa	gene	gene2435	http://www.ncbi.nlm.nih.gov/gene/?term=YE2490
YE2491	YE2491		YE2491	2682720	2683169	-	thioredoxin		gene	gene2436	http://www.ncbi.nlm.nih.gov/gene/?term=YE2491
YE2492	YE2492		YE2492	2683198	2683911	-	ABC transporter ATP-binding protein		gene	gene2437	http://www.ncbi.nlm.nih.gov/gene/?term=YE2492
YE2493	YE2493		YE2493	2683915	2685036	-	hypothetical protein		gene	gene2438	http://www.ncbi.nlm.nih.gov/gene/?term=YE2493
YE2494	YE2494		YE2494	2685062	2686354	-	hypothetical protein		gene	gene2439	http://www.ncbi.nlm.nih.gov/gene/?term=YE2494
YE2495	YE2495		YE2495	2686357	2687760	-	hypothetical protein		gene	gene2440	http://www.ncbi.nlm.nih.gov/gene/?term=YE2495
YE2496	YE2496		YE2496	2687896	2688423	-	hypothetical protein		gene	gene2441	http://www.ncbi.nlm.nih.gov/gene/?term=YE2496
YE2497	YE2497		YE2497	2688504	2690441	-	hypothetical protein		gene	gene2442	http://www.ncbi.nlm.nih.gov/gene/?term=YE2497
YE2498	YE2498		YE2498	2690615	2691133	+	hypothetical protein	no significant database hits	gene	gene2443	http://www.ncbi.nlm.nih.gov/gene/?term=YE2498
YE2499	YE2499		YE2499	2691250	2692890	-	hypothetical protein		gene	gene2444	http://www.ncbi.nlm.nih.gov/gene/?term=YE2499
YE2500	YE2500		YE2500	2693001	2694008	-	glutaminase	catalyzes the formation of glutamate from glutamine	gene	gene2445	http://www.ncbi.nlm.nih.gov/gene/?term=YE2500
YE2501	YE2501		YE2501	2694575	2695354	-	hypothetical protein		gene	gene2446	http://www.ncbi.nlm.nih.gov/gene/?term=YE2501
YE2502	YE2502		YE2502	2695357	2695980	-	aldolase		gene	gene2447	http://www.ncbi.nlm.nih.gov/gene/?term=YE2502
YE2503	YE2503		YE2503	2695977	2697284	-	hypothetical protein		gene	gene2448	http://www.ncbi.nlm.nih.gov/gene/?term=YE2503
YE2504	YE2504		YE2504	2697592	2698371	+	DeoR family transcriptional regulator		gene	gene2449	http://www.ncbi.nlm.nih.gov/gene/?term=YE2504
YE2505	YE2505		YE2505	2698616	2700292	+	sensory histidine kinase DcuS	C4-dicarboxylate-sensing histidine kinase%3B part of two-component regulatory system with DcuR%3B regulates anaerobic fumarate respiration	gene	gene2450	http://www.ncbi.nlm.nih.gov/gene/?term=YE2505
YE2506	YE2506		YE2506	2700285	2701004	+	DNA-binding transcriptional activator DcuR	response regulator in two-component regulatory system with DcuS%3B phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration	gene	gene2451	http://www.ncbi.nlm.nih.gov/gene/?term=YE2506
YE2507	YE2507		YE2507	2701116	2702474	-	citrate/sodium family symporter	Similar to many membrane transport proteins including: Streptococcus bovis L-malate permease MalP SWALL:Q53787 (EMBL:U35658) (441 aa) fasta scores: E(): 1.3e-78%2C 49.64 38d in 419 aa and to Klebsiella pneumoniae citrate-sodium symport CitS SWALL:CITN_KLEPN (SWALL:P31602) (446 aa) fasta scores: E(): 8e-38%2C 28.92 id in 439 aa	gene	gene2452	http://www.ncbi.nlm.nih.gov/gene/?term=YE2507
YE2508	YE2508	ansP	ansP	2703582	2705087	+	L-asparagine permease		gene	gene2453	http://www.ncbi.nlm.nih.gov/gene/?term=YE2508
YE2509	YE2509		YE2509	2705236	2705613	-	hypothetical protein	Similar to many including: Brucella melitensis putative uroporphyrin-III C-methyltransferase bmeii0787 SWALL:Q8YBU9 (EMBL:AE009713) (116 aa) fasta scores: E(): 1.5e-15%2C 42.47 38d in 113 aa and to Rhizobium leguminosarum hypothetical 13.6 kDa protein SWALL:Q93EB8 (EMBL:AF361470) (115 aa) fasta scores: E(): 5e-14%2C 43.51 id in 108 aa	gene	gene2454	http://www.ncbi.nlm.nih.gov/gene/?term=YE2509
YE2510	YE2510		YE2510	2705622	2705985	-			gene	gene2455	http://www.ncbi.nlm.nih.gov/gene/?term=YE2510
YE2511	YE2511		YE2511	2706166	2707182	+	hypothetical protein	Similar to several proteins of undefined function including: Listeria monocytogenes hypothetical protein Lmo0520 SWALL:Q8Y9K7 (EMBL:AL591975) (334 aa) fasta scores: E(): 7.6e-15%2C 23.78 38d in 328 aa. Also similar to the N-terminus of several regulatory proteins including: Caldicellulosiruptor sp. putative xylose repressor XylR SWALL:XYLR_CALSR (SWALL:P40981) (399 aa) fasta scores: E(): 3.5e-07%2C 26.25 38d in 278 aa	gene	gene2456	http://www.ncbi.nlm.nih.gov/gene/?term=YE2511
YE2512	YE2512		YE2512	2707420	2708592	+	inner membrane protein	Similar to many membrane proteins including: Yersinia pestis putative membrane protein Ypo1221 SWALL:Q8ZGR2 (EMBL:AJ414147) (384 aa) fasta scores: E(): 1.2e-57%2C 43.75 38d in 368 aa and to Rhizobium loti transmembrane transport protein Mlr3825 SWALL:Q98FD4 (EMBL:AP003002) (391 aa) fasta scores: E(): 2.1e-36%2C 33.6 id in 369 aa	gene	gene2457	http://www.ncbi.nlm.nih.gov/gene/?term=YE2512
YE2513	YE2513		YE2513	2708773	2709585	+	hydrolase	Highyl similar to several including: Salmonella typhimurium putative hydrolase Stm0867 SWALL:Q8ZQK7 (EMBL:AE008736) (271 aa) fasta scores: E(): 1.1e-54%2C53.53 38d in 269 aa and to Escherichia coli protein YbjI or b0844 SWALL:YBJI_ECOLI (SWALL:P75809) (271 aa) fasta scores: E(): 1.2e-54%2C 54.64 38d in 269 aa	gene	gene2458	http://www.ncbi.nlm.nih.gov/gene/?term=YE2513
YE2514	YE2514	yecC	yecC	2709719	2710474	-	amino-acid ABC transporter ATP-binding protein YecC		gene	gene2459	http://www.ncbi.nlm.nih.gov/gene/?term=YE2514
YE2515	YE2515	yecS	yecS	2710477	2711139	-	amino-acid ABC transporter permease		gene	gene2460	http://www.ncbi.nlm.nih.gov/gene/?term=YE2515
YE2516	YE2516	fliY	fliY	2711139	2711939	-	cystine transporter subunit		gene	gene2461	http://www.ncbi.nlm.nih.gov/gene/?term=YE2516
YE2517	YE2517	YedO	YedO	2712058	2713050	-	D-cysteine desulfhydrase	catalyzes the formation of pyruvate from D-cysteine	gene	gene2462	http://www.ncbi.nlm.nih.gov/gene/?term=YE2517
YE2518	YE2518	fliZ	fliZ	2713429	2713938	-	flagella biosynthesis protein FliZ	expression activator of the class 2 type of flagellar operons%2C essential to achieve maximal cell motility%3B activator of type 1 fimbrial gene expression%3B cell density-responsive regulator%3B FliZ in Salmonella typhimurium induces HilA%2C an activator of invasion genes necessary to achieve full virulence	gene	gene2463	http://www.ncbi.nlm.nih.gov/gene/?term=YE2518
YE2519	YE2519	fliA	fliA	2713994	2714716	-	flagellar biosynthesis sigma factor	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor directs late flagellar biosynthesis genes	gene	gene2464	http://www.ncbi.nlm.nih.gov/gene/?term=YE2519
YE2520	YE2520	fliB	fliB	2714907	2716112	-	flagellin lysine-N-methylase	Highly similar to Salmonella typhimurium lysine-N-methylase FliB or Stm1958 SWALL:FLIB_SALTY (SWALL:Q56106) (401 aa) fasta scores: E(): 2.1e-53%2C 36.9 id in 401 aa and to Salmonella cholerae-suis lysine-N-methylase FliB or FliU SWALL:FLIB_SALCH (SWALL:Q9KJV4) (401 aa) fasta scores: E(): 2.8e-53%2C 36.65 id in 401 aa	gene	gene2465	http://www.ncbi.nlm.nih.gov/gene/?term=YE2520
YE2521	YE2521	fliC2	fliC2	2716260	2717405	-	flagellin	structural flagella protein	gene	gene2466	http://www.ncbi.nlm.nih.gov/gene/?term=YE2521
YE2522	YE2522	fliC	fliC	2717595	2718695	-	flagellin	structural flagella protein	gene	gene2467	http://www.ncbi.nlm.nih.gov/gene/?term=YE2522
YE2523	YE2523	fliC3	fliC3	2718885	2719994	-	flagellin	structural flagella protein	gene	gene2468	http://www.ncbi.nlm.nih.gov/gene/?term=YE2523
YE2524	YE2524	fliD	fliD	2720258	2721658	+	flagellar capping protein	involved in flagellin assembly	gene	gene2469	http://www.ncbi.nlm.nih.gov/gene/?term=YE2524
YE2525	YE2525	fliS	fliS	2721669	2722067	+	flagellar protein FliS	flagellin specific chaperone	gene	gene2470	http://www.ncbi.nlm.nih.gov/gene/?term=YE2525
YE2526	YE2526	fliT	fliT	2722079	2722441	+	flagellar biosynthesis protein FliT	binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway%3B acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription%3B member of the type III cytoplasmic chaperone family	gene	gene2471	http://www.ncbi.nlm.nih.gov/gene/?term=YE2526
YE2527	YE2527		YE2527	2722716	2723585	+	AraC family transcriptional regulator		gene	gene2472	http://www.ncbi.nlm.nih.gov/gene/?term=YE2527
YE2528	YE2528		YE2528	2723915	2726869	+	chemotaxis protein	Similar to Vibrio cholerae chemotactic transducer-related protein Vca0895 SWALL:Q9KL53 (EMBL:AE004417) (981 aa) fasta scores: E(): 2.7e-81%2C37.07 38d in 990 aa. Similar in the N-terminus to Rhizobium meliloti adenylate cyclase 1 Cya1 or CyaA or r00259 or smc00339 SWALL:CYA1_RHIME (SWALL:P19485) (665 aa) fasta scores: E(): 2.5e-11%2C 22.62 38d in 411 aa	gene	gene2473	http://www.ncbi.nlm.nih.gov/gene/?term=YE2528
YE2529	YE2529		YE2529	2726956	2727558	+	glycosidase		gene	gene2474	http://www.ncbi.nlm.nih.gov/gene/?term=YE2529
YE2530	YE2530		YE2530	2727781	2727957	+	DNA-damage-inducible protein	Similar to Escherichia coli%2C and Escherichia coli O157:H7 DNA-damage-inducible protein I DinI or b1061 or z1698 or ecs1439 SWALL:DINI_ECOLI (SWALL:Q47143) (81 aa) fasta scores: E(): 1.6e-07%2C 54.54 38d in 55 aa and Serratia marcescens DNA-damage-inducible protein I DinI SWALL:DINI_SERMA (SWALL:Q9S3S0) (79 aa) fasta scores: E(): 2.3e-10%2C 58.92 38d in 56 aa. Notice the differing N-termini of the other database hits	gene	gene2475	http://www.ncbi.nlm.nih.gov/gene/?term=YE2530
YE2531	YE2531		YE2531	2728425	2729084	+	hypothetical protein	no significant database hits	gene	gene2476	http://www.ncbi.nlm.nih.gov/gene/?term=YE2531
YE2533	YE2533		YE2533	2729612	2729827	-	hypothetical protein	doubtful CDS with no significant database hits	gene	gene2477	http://www.ncbi.nlm.nih.gov/gene/?term=YE2533
YE2535	YE2535	tnpB	tnpB	2729830	2730280	+			gene	gene2478	http://www.ncbi.nlm.nih.gov/gene/?term=YE2535
YE2536	YE2536	fliE	fliE	2730477	2730788	-	flagellar hook-basal body protein FliE	forms a junction between the M-ring and FlgB during flagella biosynthesis	gene	gene2479	http://www.ncbi.nlm.nih.gov/gene/?term=YE2536
YE2537	YE2537	fliF	fliF	2731117	2732817	+	flagellar MS-ring protein	the MS-ring anchors the flagellum to the cytoplasmic membrane%3B part of the flagellar basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod	gene	gene2480	http://www.ncbi.nlm.nih.gov/gene/?term=YE2537
YE2538	YE2538	fliG	fliG	2732814	2733806	+	flagellar motor switch protein G	One of three proteins involved in switching the direction of the flagellar rotation	gene	gene2481	http://www.ncbi.nlm.nih.gov/gene/?term=YE2538
YE2539	YE2539	fliH	fliH	2733799	2734521	+	flagellar assembly protein H	binds to and inhibits the function of flagella specific ATPase FliI	gene	gene2482	http://www.ncbi.nlm.nih.gov/gene/?term=YE2539
YE2540	YE2540	fliI	fliI	2734554	2735885	+	flagellum-specific ATP synthase	involved in type III protein export during flagellum assembly	gene	gene2483	http://www.ncbi.nlm.nih.gov/gene/?term=YE2540
YE2541	YE2541	fliJ	fliJ	2735975	2736421	+	flagellar biosynthesis chaperone	rod/hook and filament chaperone	gene	gene2484	http://www.ncbi.nlm.nih.gov/gene/?term=YE2541
YE2542	YE2542	fliK	fliK	2736550	2737776	+	flagellar hook-length control protein FliK		gene	gene2485	http://www.ncbi.nlm.nih.gov/gene/?term=YE2542
YE2543	YE2543	fliL	fliL	2737967	2738437	+	flagellar basal body-associated protein FliL	interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring	gene	gene2486	http://www.ncbi.nlm.nih.gov/gene/?term=YE2543
YE2544	YE2544	fliM	fliM	2738443	2739447	+	flagellar motor switch protein FliM	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation	gene	gene2487	http://www.ncbi.nlm.nih.gov/gene/?term=YE2544
YE2545	YE2545	fliN	fliN	2739440	2739856	+	flagellar motor switch protein FliN	One of three proteins involved in switching the direction of the flagellar rotation	gene	gene2488	http://www.ncbi.nlm.nih.gov/gene/?term=YE2545
YE2546	YE2546	fliO	fliO	2739856	2740440	+	flagellar protein FliO		gene	gene2489	http://www.ncbi.nlm.nih.gov/gene/?term=YE2546
YE2547	YE2547	fliP	fliP	2740503	2741189	+	flagellar biosynthesis protein FliP	FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus	gene	gene2490	http://www.ncbi.nlm.nih.gov/gene/?term=YE2547
YE2548	YE2548	fliQ	fliQ	2741201	2741470	+	flagellar biosynthesis protein FliQ	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus	gene	gene2491	http://www.ncbi.nlm.nih.gov/gene/?term=YE2548
YE2549	YE2549	fliR	fliR	2741473	2742255	+	flagellar biosynthesis protein FliR	FliR%2C with proteins FliP and FliQ%2C forms the core of the central channel in the flagella export apparatus	gene	gene2492	http://www.ncbi.nlm.nih.gov/gene/?term=YE2549
YE2550	YE2550	flgL	flgL	2742771	2743751	-	flagellar hook-associated protein FlgL	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes	gene	gene2493	http://www.ncbi.nlm.nih.gov/gene/?term=YE2550
YE2551	YE2551	flgK	flgK	2743865	2745529	-	flagellar hook-associated protein FlgK	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook	gene	gene2494	http://www.ncbi.nlm.nih.gov/gene/?term=YE2551
YE2552	YE2552	flgJ	flgJ	2745852	2746775	-	flagellar rod assembly protein/muramidase FlgJ	Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space	gene	gene2495	http://www.ncbi.nlm.nih.gov/gene/?term=YE2552
YE2553	YE2553	flgI	flgI	2746814	2747890	-	flagellar basal body P-ring protein	part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B Vibrio parahaemolyticus%2C Yersinia%2C Bradyrhizobium and other bacteria have two copies of this and other flagellar genes%3B the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum	gene	gene2496	http://www.ncbi.nlm.nih.gov/gene/?term=YE2553
YE2554	YE2554	flgH	flgH	2747947	2748630	-	flagellar basal body L-ring protein	part of the flagellar basal body which consists of four rings L%2CP%2C S and M mounted on a central rod	gene	gene2497	http://www.ncbi.nlm.nih.gov/gene/?term=YE2554
YE2555	YE2555	flaL	flaL	2748755	2749408	-	flagellar basal-body rod protein FlgG		gene	gene2498	http://www.ncbi.nlm.nih.gov/gene/?term=YE2555
YE2556	YE2556	flgF	flgF	2749564	2750319	-	flagellar basal body rod protein FlgF	FlgF%2C with FlgB and C%2C makes up the proximal portion of the flagellar basal body rod%3B Yersinia contains two copies of this and other flagella genes	gene	gene2499	http://www.ncbi.nlm.nih.gov/gene/?term=YE2556
YE2557	YE2557	flgE	flgE	2750341	2751600	-	flagellar hook protein FlgE	the hook connects flagellar basal body to the flagellar filament	gene	gene2500	http://www.ncbi.nlm.nih.gov/gene/?term=YE2557
YE2558	YE2558	flgD	flgD	2751944	2752519	-	flagellar basal body rod modification protein	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of some flagellar genes%3B in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production	gene	gene2501	http://www.ncbi.nlm.nih.gov/gene/?term=YE2558
YE2559	YE2559	flgC	flgC	2752646	2753050	-	flagellar basal body rod protein FlgC	with FlgF and B makes up the proximal portion of the flagellar basal body rod	gene	gene2502	http://www.ncbi.nlm.nih.gov/gene/?term=YE2559
YE2560	YE2560	flgB	flgB	2753056	2753469	-	flagellar basal body rod protein FlgB	with FlgF and C makes up the proximal portion of the flagellar basal body rod%3B Vibrio parahaemolyticus protein is associated with the polar flagella	gene	gene2503	http://www.ncbi.nlm.nih.gov/gene/?term=YE2560
YE2561	YE2561	flgA	flgA	2753731	2754333	+	flagellar basal body P-ring biosynthesis protein FlgA	required for the assembly of the flagellar basal body P-ring	gene	gene2504	http://www.ncbi.nlm.nih.gov/gene/?term=YE2561
YE2562	YE2562	flgM	flgM	2754540	2754797	+	anti-sigma-28 factor FlgM	regulates the flagellar specific sigma28 transcription factor	gene	gene2505	http://www.ncbi.nlm.nih.gov/gene/?term=YE2562
YE2563	YE2563	flgN	flgN	2754849	2755289	+	flagella synthesis protein FlgN		gene	gene2506	http://www.ncbi.nlm.nih.gov/gene/?term=YE2563
YE2564	YE2564	invA	invA	2755292	2757799	-	invasin		gene	gene2507	http://www.ncbi.nlm.nih.gov/gene/?term=YE2564
YE2565	YE2565	flhE	flhE	2758310	2758732	-	flagellar protein FlhE		gene	gene2508	http://www.ncbi.nlm.nih.gov/gene/?term=YE2565
YE2566	YE2566	flhA	flhA	2758732	2760810	-	flagellar biosynthesis protein FlhA	membrane protein involved in the flagellar export apparatus	gene	gene2509	http://www.ncbi.nlm.nih.gov/gene/?term=YE2566
YE2567	YE2567	flhB	flhB	2760810	2761961	-	flagellar biosynthesis protein FlhB	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export%3B Yersinia has 2 copies of flhB%3B Bradyrhizobium has one thick flagellum and several thin flagella%3B the Bradyrhizobium protein in this cluster is associated with the thin flagella	gene	gene2510	http://www.ncbi.nlm.nih.gov/gene/?term=YE2567
YE2568	YE2568	hreP	hreP	2762376	2764025	+	subtilisin/kexin-like protease	Previously sequenced as Yersinia enterocolitica subtilisin/kexin-like protease HreP SWALL:Q93P02 (EMBL:AF354753) (549 aa) fasta scores: E(): 0%2C 100 38d in 549 aa. Also highly similar to Anabaena sp. calcium-dependent protease precursor PrcA or Alr1381 SWALL:PRCA_ANASP (SWALL:Q59149) (662 aa) fasta scores: E(): 1e-90%2C 47.45 38d in 550 aa	gene	gene2511	http://www.ncbi.nlm.nih.gov/gene/?term=YE2568
YE2569	YE2569	cheZ	cheZ	2764110	2764754	-	chemotaxis regulator CheZ	cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation	gene	gene2512	http://www.ncbi.nlm.nih.gov/gene/?term=YE2569
YE2570	YE2570	cheY	cheY	2764764	2765153	-	chemotaxis regulatory protein CheY	chemotaxis regulator that%2C when phosphorylated%2C interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble	gene	gene2513	http://www.ncbi.nlm.nih.gov/gene/?term=YE2570
YE2571	YE2571	cheB	cheB	2765345	2766394	-	chemotaxis-specific methylesterase	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins	gene	gene2514	http://www.ncbi.nlm.nih.gov/gene/?term=YE2571
YE2572	YE2572	cheR	cheR	2766394	2767221	-	chemotaxis methyltransferase CheR	methylates the MCP	gene	gene2515	http://www.ncbi.nlm.nih.gov/gene/?term=YE2572
YE2573	YE2573		YE2573	2767283	2768920	-	methyl-accepting chemotaxis protein		gene	gene2516	http://www.ncbi.nlm.nih.gov/gene/?term=YE2573
YE2575	YE2575	cheD	cheD	2769105	2770778	-	methyl-accepting chemotaxis protein		gene	gene2517	http://www.ncbi.nlm.nih.gov/gene/?term=YE2575
YE2576	YE2576	cheW	cheW	2771060	2771557	-	purine-binding chemotaxis protein		gene	gene2518	http://www.ncbi.nlm.nih.gov/gene/?term=YE2576
YE2577	YE2577	cheA	cheA	2771738	2773792	-	chemotaxis protein CheA	chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY%3B sensory histidine kinase/signal sensing protein%3B CheA is the histidine kinase component	gene	gene2519	http://www.ncbi.nlm.nih.gov/gene/?term=YE2577
YE2578	YE2578	motB	motB	2773803	2775047	-	flagellar motor protein MotB	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine	gene	gene2520	http://www.ncbi.nlm.nih.gov/gene/?term=YE2578
YE2579	YE2579	motA	motA	2775044	2775931	-	flagellar motor protein MotA	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine	gene	gene2521	http://www.ncbi.nlm.nih.gov/gene/?term=YE2579
YE2580	YE2580	flhC	flhC	2776069	2776650	-	transcriptional activator FlhC	With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems	gene	gene2522	http://www.ncbi.nlm.nih.gov/gene/?term=YE2580
YE2581	YE2581	flhD	flhD	2776654	2777013	-	transcriptional activator FlhD	with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems	gene	gene2523	http://www.ncbi.nlm.nih.gov/gene/?term=YE2581
YE2583	YE2583		YE2583	2778028	2778447	+	universal stress protein UspC	ppGpp-dependent%3B membrane-associated%2C stress protein produced under conditions of nutrient deprivation%2C osmotic shock and oxidative stress	gene	gene2524	http://www.ncbi.nlm.nih.gov/gene/?term=YE2583
YE2584	YE2584		YE2584	2778611	2779645	+	oxidoreductase	Similar to many putative oxidoreductases including: Escherichia coli putative NADP-dependent oxidoreductase YncB or b1449 SWALL:YNCB_ECOLI (SWALL:P76113) (353 aa) fasta scores: E(): 1.6e-92%2C 68.89 38d in 344 aaand to Salmonella typhi putative NADP-dependent oxidoreductase Sty1476 SWALL:Q8Z742 (EMBL:AL627270) (345 aa) fasta scores: E(): 2.3e-89%2C 66.86 38d in 344 aa	gene	gene2525	http://www.ncbi.nlm.nih.gov/gene/?term=YE2584
YE2585	YE2585	mgtB	mgtB	2779706	2782324	-	Mg(2+) transport ATPase protein B		gene	gene2526	http://www.ncbi.nlm.nih.gov/gene/?term=YE2585
YE2586	YE2586	mgtC	mgtC	2782625	2783335	-	Mg(2+) transport ATPase protein C		gene	gene2527	http://www.ncbi.nlm.nih.gov/gene/?term=YE2586
YE2588	YE2588		YE2588	2784461	2786200	+	methyl-accepting chemotaxis protein	Similar to many chemotaxis proteins incuding: Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 1.5e-94%2C 59.18 38d in 517 aa and to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar or CheM or Stm1919 SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 3.3e-66%2C 45.76 38d in 566 aa	gene	gene2528	http://www.ncbi.nlm.nih.gov/gene/?term=YE2588
YE2589	YE2589		YE2589	2786333	2786524	-	hypothetical protein		gene	gene2529	http://www.ncbi.nlm.nih.gov/gene/?term=YE2589
YE2590	YE2590	cspC2	cspC2	2786778	2786990	-	cold shock-like protein CspC2	Similar to Escherichia coli%2C Escherichia coli O157:H7%2C Salmonella typhimurium%2C and Salmonella typhi cold shock-like protein CspC cspC or msmB or b1823 or z2868 or ecs2533 or stm1837 or sty1967 SWALL:CSPC_ECOLI (SWALL:P36996) (68 aa) fasta scores: E(): 1.6e-21%2C 84.84 id in 66 aa%2C and to Yersinia pestis cold shock protein ypo1655 SWALL:Q8ZFN9 (EMBL:AJ414149) (70 aa) fasta scores: E(): 1.7e-27%2C 100 38d in 70 aa	gene	gene2530	http://www.ncbi.nlm.nih.gov/gene/?term=YE2590
YE2591	YE2591	lacI	lacI	2787472	2788506	+	lac repressor	transcriptional repressor of lac operon%3B forms a homotetramer as a dimer of dimers%3B binds specific sites in lac operon resulting in DNA looping between the operators%3B binds allolactose as inducer	gene	gene2531	http://www.ncbi.nlm.nih.gov/gene/?term=YE2591
YE2592	YE2592	lacZ	lacZ	2788683	2791835	+	beta-D-galactosidase	forms a homotetramer%3B hydrolyzes lactose disaccharide to galactose and glucose%3B converts lactose to allolactose which is the natural inducer of the lac operon	gene	gene2532	http://www.ncbi.nlm.nih.gov/gene/?term=YE2592
YE2594	YE2594		YE2594	2792040	2792826	-			gene	gene2533	http://www.ncbi.nlm.nih.gov/gene/?term=YE2594
YE2595	YE2595		YE2595	2793089	2794099	+	zinc-binding dehydrogenase		gene	gene2534	http://www.ncbi.nlm.nih.gov/gene/?term=YE2595
YE2596	YE2596	ylaC	ylaC	2794337	2794870	+	hypothetical protein		gene	gene2535	http://www.ncbi.nlm.nih.gov/gene/?term=YE2596
YE2597	YE2597		YE2597	2795126	2795584	+	transcription regulator AsnC		gene	gene2536	http://www.ncbi.nlm.nih.gov/gene/?term=YE2597
YE2598	YE2598		YE2598	2795739	2796566	+	hypothetical protein		gene	gene2537	http://www.ncbi.nlm.nih.gov/gene/?term=YE2598
YE2599	YE2599		YE2599	2796772	2796984	+	hypothetical protein		gene	gene2538	http://www.ncbi.nlm.nih.gov/gene/?term=YE2599
YE2600	YE2600		YE2600	2797251	2798576	-	phosphoanhydride phosphorylase		gene	gene2539	http://www.ncbi.nlm.nih.gov/gene/?term=YE2600
YE2601	YE2601	glgC	glgC	2798907	2800184	+	glucose-1-phosphate adenylyltransferase	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate	gene	gene2540	http://www.ncbi.nlm.nih.gov/gene/?term=YE2601
YE2602	YE2602		YE2602	2800444	2800956	-	periplasmic chaperone protein	member of the periplasmic pilus chaperone family of proteins	gene	gene2541	http://www.ncbi.nlm.nih.gov/gene/?term=YE2602
YE2603	YE2603		YE2603	2801295	2802812	+	sugar kinase	Similar to many kinases including: Pasteurella multocida probable L-xylulose kinase Lyx or Pm1247 SWALL:LYXK_PASMU (SWALL:P57928) (483 aa) fasta scores: E(): 4e-44%2C 29.97 38d in 487 aa%2C Lactobacillus pentosus xylulose kinase XylB SWALL:XYLB_LACPE (SWALL:P21939) (501 aa) fasta scores: E(): 1.1e-41%2C 30.28 38d in 492 aa and Haemophilus influenzae probable L-xylulose kinase Lyx or LyxK or Sgbk or hi1027 SWALL:LYXK_HAEIN (SWALL:P44991) (485 aa) fasta scores: E(): 1.1e-40%2C 29.89 38d in 495 aa	gene	gene2542	http://www.ncbi.nlm.nih.gov/gene/?term=YE2603
YE2604	YE2604		YE2604	2802809	2803825	+	oxidoreductase	Similar in parts to several dehydrogenases including: Synechocystis sp. D-3-phosphoglycerate dehydrogenase SerA or Sll1908 SWALL:SERA_SYNY3 (SWALL:P73821) (554 aa) fasta scores: E(): 6.4e-23%2C 37.26 id in 322 aa and Methanobacterium thermoautotrophicum D-3-phosphoglycerate dehydrogenase Mth970 SWALL:SERA_METTH (SWALL:O27051) (525 aa) fasta scores: E(): 5e-21%2C 38.56 id in 293 aa	gene	gene2543	http://www.ncbi.nlm.nih.gov/gene/?term=YE2604
YE2605	YE2605		YE2605	2803850	2804794	-	sugar kinase		gene	gene2544	http://www.ncbi.nlm.nih.gov/gene/?term=YE2605
YE2606	YE2606		YE2606	2804804	2805805	-	sugar permease	Similar to many sugar permeases including: Bacillus subtilis ribose transport system permease protein RbsC SWALL:RBSC_BACSU (SWALL:P36948) (322 aa) fasta scores: E(): 1.3e-27%2C 35.52 38d in 304 aa and to Yersinia pestis ribose transport system%2C permease protein Ypo1553 SWALL:Q8ZFX0 (EMBL:AJ414149) (331 aa) fasta scores: E(): 3.1e-28%2C 31.83 38d in 311 aa	gene	gene2545	http://www.ncbi.nlm.nih.gov/gene/?term=YE2606
YE2607	YE2607		YE2607	2805814	2806830	-	membrane permease	Similar to Bacillus subtilis ribose transport system permease protein RbsC SWALL:RBSC_BACSU (SWALL:P36948) (322 aa) fasta scores: E(): 3.8e-20%2C 31.83 id in 311 aa and to Rhizobium loti permease protein%2C sugar ABC transporter mlr3338 SWALL:Q98GG7 (EMBL:AP003001) (322 aa) fasta scores: E(): 4e-21%2C 30.94 38d in 307 aa	gene	gene2546	http://www.ncbi.nlm.nih.gov/gene/?term=YE2607
YE2608	YE2608		YE2608	2806827	2808395	-	sugar transport system ATP-binding protein	Similar to many including: Bacillus subtilis ribose transport ATP-binding protein RbsA SWALL:RBSA_BACSU (SWALL:P36947) (493 aa) fasta scores: E(): 1e-56%2C 37.04 id in 494 aa%2C Yersinia pestis putative sugar transport system%2C ATP-binding protein RbsA or Ypo2500 SWALL:Q8ZDQ6 (EMBL:AJ414152) (496 aa) fasta scores: E(): 9.7e-58%2C39.36 38d in 503 aa and Escherichia coli O157:H7 putative ATP-binding protein of ribose ABC transport system z5691 or ecs5073 SWALL:Q8X5Q4 (EMBL:AE005642) (517 aa) fasta scores: E(): 2.7e-57%2C 39.52 38d in 506 aa	gene	gene2547	http://www.ncbi.nlm.nih.gov/gene/?term=YE2608
YE2609	YE2609		YE2609	2808400	2809392	-	ABC transporter substrate-binding protein	Similar to many sugar transport proteins including: Escherichia coli O157:H7 putative periplasmic ribose-binding protein of ABC transport system z5689 or ecs5071 SWALL:Q8X5Q6 (EMBL:AE005642) (313 aa) fasta scores: E(): 2.3e-10%2C 28.7 38d in 317 aa%2C Rhizobium meliloti putative rhizopine-binding protein precursor MocB SWALL:MOCB_RHIME (SWALL:P49308) (309 aa) fasta scores: E(): 0.0001%2C 26.86 38d in 309 aa and Bacillus subtilis D-ribose-binding protein precursor RbsB SWALL:RBSB_BACSU (SWALL:P36949) (305 aa) fasta scores: E(): 0.00012%2C 25.99 id in 277 aa	gene	gene2548	http://www.ncbi.nlm.nih.gov/gene/?term=YE2609
YE2610	YE2610		YE2610	2809929	2810732	+	hypothetical protein		gene	gene2549	http://www.ncbi.nlm.nih.gov/gene/?term=YE2610
YE2611	YE2611	int	int	2811152	2812414	+			gene	gene2551	http://www.ncbi.nlm.nih.gov/gene/?term=YE2611
YE2612	YE2612	irp9	irp9	2812607	2813911	-	salicylate synthase Irp9	catalyzes the conversion of chorismate to salicylate in the biosynthesis of the siderophore yersiniabactin	gene	gene2552	http://www.ncbi.nlm.nih.gov/gene/?term=YE2612
YE2613	YE2613	irp8	irp8	2813939	2815219	-	signal transducer		gene	gene2553	http://www.ncbi.nlm.nih.gov/gene/?term=YE2613
YE2614	YE2614	irp7	irp7	2815212	2817014	-	ABC transporter inner membrane protein YbtQ		gene	gene2554	http://www.ncbi.nlm.nih.gov/gene/?term=YE2614
YE2615	YE2615	irp6	irp6	2817001	2818803	-	ABC transporter inner membrane protein		gene	gene2555	http://www.ncbi.nlm.nih.gov/gene/?term=YE2615
YE2616	YE2616	ybtA	ybtA	2819095	2820054	+	transcriptional regulator YbtA		gene	gene2556	http://www.ncbi.nlm.nih.gov/gene/?term=YE2616
YE2617	YE2617	irp2	irp2	2820259	2826366	+	yersiniabactin biosynthetic protein		gene	gene2557	http://www.ncbi.nlm.nih.gov/gene/?term=YE2617
YE2618	YE2618	irp1	irp1	2826454	2835939	+	yersiniabactin biosynthetic protein		gene	gene2558	http://www.ncbi.nlm.nih.gov/gene/?term=YE2618
YE2619	YE2619	irp3	irp3	2835936	2837036	+	yersiniabactin biosynthetic protein YbtU		gene	gene2559	http://www.ncbi.nlm.nih.gov/gene/?term=YE2619
YE2620	YE2620	irp4	irp4	2837033	2837836	+	yersiniabactin biosynthetic protein YbtT		gene	gene2560	http://www.ncbi.nlm.nih.gov/gene/?term=YE2620
YE2621	YE2621	irp5	irp5	2837840	2839417	+	yersiniabactin siderophore biosynthetic protein		gene	gene2561	http://www.ncbi.nlm.nih.gov/gene/?term=YE2621
YE2622	YE2622	fyuA	fyuA	2839548	2841569	+	pesticin/yersiniabactin receptor protein		gene	gene2562	http://www.ncbi.nlm.nih.gov/gene/?term=YE2622
YE2624	YE2624		YE2624	2842378	2843380	-			gene	gene2563	http://www.ncbi.nlm.nih.gov/gene/?term=YE2624
YE2625	YE2625	tnpB	tnpB	2843960	2844709	-	transposase B	Previously sequenced as Yersinia enterocolitica transposase B TnpB SWALL:Q9RIG3 (EMBL:AJ251581) (249 aa) fasta scores: E(): 1.4e-104%2C 100 38d in 249 aa. Also similar to Xanthomonas axonopodis pv. citri str. 306 ISxac3 transposase Xac0578 SWALL:AAM35467 (EMBL:AE011685) (272 aa) fasta scores: E(): 3.4e-37%2C 44.13 38d in 247 aa	gene	gene2564	http://www.ncbi.nlm.nih.gov/gene/?term=YE2625
YE2626	YE2626	tnpA	tnpA	2844799	2845131	-	IS1329 transposase A	Previously sequenced as Yersinia enterocolitica IS1329 transposase A Trp1329A SWALL:Q9X9I2 (EMBL:AJ132945) (110 aa) fasta scores: E(): 1.8e-38%2C 100 38d in 110 aa. Also similar to Shigella dysenteriae transposase InsN for insertion sequence element IS911 SWALL:INSN_SHIDY (SWALL:P39213) (112 aa) fasta scores: E(): 7.6e-13%2C 42.45 id in 106 aa	gene	gene2565	http://www.ncbi.nlm.nih.gov/gene/?term=YE2626
YE2628	YE2628		YE2628	2845485	2846861	+	hypothetical protein	Previously sequenced as Yersinia enterocolitica high pathogenicity island hypothetical protein SWALL:Q9X9I0 (EMBL:AJ132945) (458 aa) fasta scores: E(): 4.8e-188%2C 100 38d in 458 aa. Also weakly similar to Listeria monocytogenes hypothetical protein Lmo0067 SWALL:Q8YAQ0 (EMBL:AL591973) (329 aa) fasta scores: E(): 0.011%2C 25.86 38d in 375 aa	gene	gene2566	http://www.ncbi.nlm.nih.gov/gene/?term=YE2628
YE2629	YE2629	trp1400B	trp1400B	2846919	2847713	-	IS1400 transposase B	Previously sequenced as Yersinia enterocolitica IS1400 transposase B Trp1400B SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): 3.3e-107%2C 99.24 38d in 264 aa Also similar to many others e.g. Yersinia pestis putative transposase Ypcd1.94 SWALL:Q9RI05 (EMBL:AL117189) (269 aa) fasta scores: E(): 5.7e-38%2C 44.04 38d in 252 aa. Note the differing predicted start codons for this CDS compared with that previously published.	gene	gene2567	http://www.ncbi.nlm.nih.gov/gene/?term=YE2629
YE2630	YE2630	trp1400A	trp1400A	2847764	2848051	-	IS1400 transposase A	Previously sequenced as Yersinia enterocolitica IS1400 transposase A Trp1400A SWALL:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 3e-31%2C 96.84 38d in 95 aa. Also similar to many others e.g. Yersinia pestis putative transposase Y0084 or Ypcd1.93 SWALL:O68709 (EMBL:AF053946) (88 aa) fasta scores: E(): 5.5e-15%2C 52.27 38d in 88 aa	gene	gene2568	http://www.ncbi.nlm.nih.gov/gene/?term=YE2630
YE2632	YE2632		YE2632	2848733	2850496	-	hypothetical protein	N-terminal region has previously been sequenced as Yersinia enterocolitica hypothetical 44.5 kDa protein SWALL:Q9X9H5 (EMBL:AJ132945) (384 aa) fasta scores: E(): 2.4e-151%2C 99.47 38d in 384 aa. C-terminal region has previously been sequenced as Yersinia enterocolitica hypothetical 22.9 kDa protein SWALL:Q9X9H6 (EMBL:AJ132945) (196 aa) fasta scores: E(): 2.2e-70%2C 98.98 38d in 196 aa. Similar to the C-terminal region of Escherichia coli hypothetical protein YfjK SWALL:YFJK_ECOLI (SWALL:P52126) (729 aa) fasta scores: E(): 5.8e-29%2C 31.08 38d in 579 aa. Possible pseudogene	gene	gene2569	http://www.ncbi.nlm.nih.gov/gene/?term=YE2632
YE2633	YE2633		YE2633	2850641	2850952	-	hypothetical protein	Previously sequenced as Yersinia enterocolitica hypothetical 12.0 kDa protein SWALL:Q9X9H4 (EMBL:AJ132945) (103 aa) fasta scores: E(): 1.2e-39%2C 100 38d in 103 aa. Similar to the N-terminus of Escherichia coli hypothetical protein YfjK SWALL:YFJK_ECOLI (SWALL:P52126) (729 aa) fasta scores: E(): 0.025%2C 27.55 38d in 98 aa. Possible pseudogene	gene	gene2570	http://www.ncbi.nlm.nih.gov/gene/?term=YE2633
YE2634	YE2634		YE2634	2850949	2852388	-	hypothetical protein	N-terminus has previously sequenced as Yersinia enterocolitica hypothetical 43.1 kDa protein SWALL:Q9X9H3 (EMBL:AJ132945) (383 aa) fasta scores: E(): 1.9e-149%2C99.47 38d in 380 aa. C-terminus is similar to the C-terminal region of Corynebacterium glutamicum acetate kinase AckA or Ack SWALL:ACKA_CORGL (SWALL:P77845) (397 aa) fasta scores: E(): 1.7%2C 20.18 38d in 317 aa. Possible alternative translational start site	gene	gene2571	http://www.ncbi.nlm.nih.gov/gene/?term=YE2634
YE2635	YE2635		YE2635	2852375	2853514	-	metallo-beta-lactamase superfamily protein	Previously sequenced as Yersinia enterocolitica hypothetical 43.2 kDa protein SWALL:Q9X9H2 (EMBL:AJ132945) (379 aa) fasta scores: E(): 1.5e-141%2C 100 38d in 379 aa. C-terminus is similar to the C-terminal region of Staphylococcus aureus hypothetical protein SAV1588 or SA1416 SWALL:Q99TR1 (EMBL:AP003362) (733 aa) fasta scores: E(): 0.0073%2C 26.13 38d in 264 aa	gene	gene2572	http://www.ncbi.nlm.nih.gov/gene/?term=YE2635
YE2636	YE2636	rluA	rluA	2854263	2854961	+	ribosomal large subunit pseudouridine synthase	Similar to Escherichia coli ribosomal large subunit pseudouridine synthase A RluA SWALL:RLUA_ECOLI (SWALL:P39219) (218 aa) fasta scores: E(): 1.7e-21%2C 42 38d in 200 aa. N-terminus has previously been sequenced as Yersinia enterocolitica hypothetical 13.7 kDa protein SWALL:Q9X9H1 (EMBL:AJ132945) (125 aa) fasta scores: E(): 2e-48%2C 99.2 38d in 125 aa	gene	gene2573	http://www.ncbi.nlm.nih.gov/gene/?term=YE2636
YE2637	YE2637		YE2637	2854972	2855511	-	hypothetical protein	Similar to many proteins of undefined function including: Yersinia pestis nucleoprotein/polynucleotide-associated enzyme y2589 SWALL:Q8D084 (EMBL:AE013861) (179 aa) fasta scores: E(): 8.5e-50%2C 92.73 38d in 179 aa and Escherichia coli hypothetical protein YaiL or b0354 SWALL:YAIL_ECOLI (SWALL:P51024) (179 aa) fasta scores: E(): 2e-46%2C 86.59 id in 179 aa	gene	gene2574	http://www.ncbi.nlm.nih.gov/gene/?term=YE2637
YE2638	YE2638		YE2638	2855655	2856086	-	PTS system transporter subunit IIA	Similar to Bacillus stearothermophilus PTS system%2Cmannitol-specific IIa component MtlF SWALL:PTMA_BACST (SWALL:Q45420) (145 aa) fasta scores: E(): 3.4e-11%2C 33.08 id in 136 aa%2C and to Staphylococcus carnosus PTS system%2Cmannitol-specific IIa component MtlF SWALL:PTMA_STACA (SWALL:P17876) (143 aa) fasta scores: E(): 5.4e-11%2C 32.03 id in 128 aa	gene	gene2575	http://www.ncbi.nlm.nih.gov/gene/?term=YE2638
YE2639	YE2639		YE2639	2856139	2857536	-	transporter protein		gene	gene2576	http://www.ncbi.nlm.nih.gov/gene/?term=YE2639
YE2640	YE2640		YE2640	2858260	2859159	-			gene	gene2577	http://www.ncbi.nlm.nih.gov/gene/?term=YE2640
YE2642	YE2642		YE2642	2859267	2860016	-	phosphopantetheinyl transferase		gene	gene2578	http://www.ncbi.nlm.nih.gov/gene/?term=YE2642
YE2644	YE2644		YE2644	2860721	2861560	+	C4-dicarboxylate transporter periplasmic protein		gene	gene2579	http://www.ncbi.nlm.nih.gov/gene/?term=YE2644
YE2645	YE2645		YE2645	2861684	2862190	+	C4-dicarboxylate transporter small subunit		gene	gene2580	http://www.ncbi.nlm.nih.gov/gene/?term=YE2645
YE2646	YE2646		YE2646	2862209	2863501	+	C4-dicarboxylate transporter large subunit		gene	gene2581	http://www.ncbi.nlm.nih.gov/gene/?term=YE2646
YE2647	YE2647	citT	citT	2863701	2865164	-	citrate carrier	Similar to Escherichia coli citrate carrier CitT SWALL:CITT_ECOLI (SWALL:P77405) (487 aa) fasta scores: E(): 1.4e-159%2C 81.68 38d in 486 aa%2C and to Salmonella typhi citrate carrier STY0667 SWALL:Q8Z8J3 (EMBL:AL627267) (501 aa) fasta scores: E(): 2.3e-123%2C 79.8 38d in 500 aa	gene	gene2582	http://www.ncbi.nlm.nih.gov/gene/?term=YE2647
YE2648	YE2648	citG	citG	2865158	2866126	-	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase	Similar to Escherichia coli 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase CitG SWALL:CITG_ECOLI (SWALL:P77231) (292 aa) fasta scores: E(): 5.2e-65%2C 58.27 38d in 290 aa%2C and to Salmonella typhi CitG protein STY0668 SWALL:Q8Z8J2 (EMBL:AL627267) (298 aa) fasta scores: E(): 1.5e-66%2C 64.2 id in 271 aa	gene	gene2583	http://www.ncbi.nlm.nih.gov/gene/?term=YE2648
YE2649	YE2649	citX	citX	2866131	2866679	-	apo-citrate lyase phosphoribosyl-dephospho-CoA transferase	Similar to Escherichia coli apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CitX SWALL:CITX_ECOLI (SWALL:P77563) (183 aa) fasta scores: E(): 5e-33%2C 49.15 38d in 177 aa%2C and to Salmonella typhimurium putative cytoplasmic protein STM0620 SWALL:Q8ZR13 (EMBL:AE008724) (183 aa) fasta scores: E(): 8.1e-32%2C 47.97 38d in 173 aa	gene	gene2584	http://www.ncbi.nlm.nih.gov/gene/?term=YE2649
YE2650	YE2650	citF	citF	2866683	2868200	-	citrate lyase subunit alpha	Similar to Klebsiella pneumoniae citrate lyase alpha chain CitF SWALL:CILA_KLEPN (SWALL:P45413) (508 aa) fasta scores: E(): 3.7e-133%2C 70.78 38d in 486 aa%2C and to Salmonella typhimurium bifunctional citrate lyase alpha chain/citrate-ACP transferase STM0621 SWALL:Q8ZR12 (EMBL:AE008724) (509 aa) fasta scores: E(): 2.1e-158%2C79.76 38d in 504 aa	gene	gene2585	http://www.ncbi.nlm.nih.gov/gene/?term=YE2650
YE2651	YE2651	citE	citE	2868204	2869100	-	citrate lyase subunit beta		gene	gene2586	http://www.ncbi.nlm.nih.gov/gene/?term=YE2651
YE2652	YE2652	citD	citD	2869097	2869390	-	citrate lyase subunit gamma	acyl carrier protein%3B with CitE and CitF catalyzes the formation of oxaloacetate from citrate	gene	gene2587	http://www.ncbi.nlm.nih.gov/gene/?term=YE2652
YE2653	YE2653	citC	citC	2869491	2870567	-	[citrate [pro-3s]-lyase] ligase	Similar to Escherichia coli [citrate [pro-3s]-lyase] ligase CitC SWALL:CITC_ECOLI (SWALL:P77390) (352 aa) fasta scores: E(): 9.5e-104%2C70.77 38d in 349 aa%2C and to Salmonella typhimurium citrate lyase synthetase STM0624 SWALL:Q8ZR10 (EMBL:AE008724) (358 aa) fasta scores: E(): 6.1e-104%2C 70.94 38d in 351 aa	gene	gene2588	http://www.ncbi.nlm.nih.gov/gene/?term=YE2653
YE2654	YE2654	citA	citA	2870925	2872580	+	sensor kinase protein	Two-component regulatory system family%2C sensor kinase protein. Similar to Escherichia coli sensor kinase DpiB or CitA or MpdB SWALL:DPIB_ECOLI (SWALL:P77510) (552 aa) fasta scores: E(): 9.6e-131%2C 62.31 38d in 528 aa%2C and to Salmonella typhi sensor kinase STY0674 SWALL:Q8Z8I7 (EMBL:AL627267) (553 aa) fasta scores: E(): 3.5e-131%2C62.47 38d in 533 aa	gene	gene2589	http://www.ncbi.nlm.nih.gov/gene/?term=YE2654
YE2655	YE2655	citB	citB	2872602	2873288	+	response regulator protein	Two-component regulatory system family%2C response regulator protein. Similar to Escherichia coli and Shigella flexneri transcriptional regulatory protein DpiA or CitB or MpdA or CriR SWALL:DPIA_ECOLI (SWALL:Q54149) (226 aa) fasta scores: E(): 1.4e-48%2C 59.72 38d in 221 aa%2Cand to Salmonella typhi transcriptional regulatory protein STY0675 SWALL:Q8Z8I6 (EMBL:AL627267) (226 aa) fasta scores: E(): 5e-49%2C 59.72 38d in 221 aa	gene	gene2590	http://www.ncbi.nlm.nih.gov/gene/?term=YE2655
YE2656	YE2656		YE2656	2873490	2874119	+	GerR-family transcriptional regulatory protein	Similar to Salmonella typhimurium transcriptional regulatory protein UhpA or Stm3790 SWALL:UHPA_SALTY (SWALL:P27667) (196 aa) fasta scores: E(): 5.7e-33%2C 52.52 id in 198 aa and to Escherichia coli O157:H7 putative response regulator%2C hexosephosphate transport z0463 or ecs0418 SWALL:Q8X5I8 (EMBL:AE005216) (209 aa) fasta scores: E(): 7.8e-57%2C 72.24 38d in 209 aa	gene	gene2591	http://www.ncbi.nlm.nih.gov/gene/?term=YE2656
YE2657	YE2657		YE2657	2874121	2875698	+	sensor kinase protein	Two-component regulatory system family%2C sensor kinase protein. Similar to Salmonella typhimurium sensor protein UhpB SWALL:UHPB_SALTY (SWALL:P27668) (500 aa) fasta scores: E(): 4.6e-29%2C 37.57 38d in 495 aa%2C and to Escherichia coli O157:H7 putative sensor kinase%2Chexosephosphate transport Z0462 or ECS0417 SWALL:Q8X5I9 (EMBL:AE005216) (513 aa) fasta scores: E(): 4.4e-104%2C55.92 38d in 506 aa	gene	gene2592	http://www.ncbi.nlm.nih.gov/gene/?term=YE2657
YE2658	YE2658		YE2658	2875787	2877118	+	transporter protein	Similar to Escherichia coli regulatory protein UhpC SWALL:UHPC_ECOLI (SWALL:P09836) (439 aa) fasta scores: E(): 2.1e-90%2C 53.09 38d in 420 aa%2C and to Escherichia coli glycerol-3-phosphate transporter GlpT SWALL:GLPT_ECOLI (SWALL:P08194) (452 aa) fasta scores: E(): 3.2e-47%2C 33.18 id in 437 aa	gene	gene2593	http://www.ncbi.nlm.nih.gov/gene/?term=YE2658
YE2659	YE2659		YE2659	2877238	2878269	+	extracellular solute-binding protein	Similar to Serratia marcescens iron(iii)-binding periplasmic protein precursor SfuA SWALL:SFUA_SERMA (SWALL:P21408) (338 aa) fasta scores: E(): 2.8e-09%2C 23.69 id in 346 aa%2C and to Escherichia coli O157:H7 periplasmic ferric iron-binding protein AfuA SWALL:Q8X5J1 (EMBL:AE005215) (343 aa) fasta scores: E(): 2.5e-116%2C84.25 38d in 343 aa	gene	gene2594	http://www.ncbi.nlm.nih.gov/gene/?term=YE2659
YE2660	YE2660		YE2660	2878392	2880470	+	binding protein-dependent transport system%2C inner-membrane component		gene	gene2595	http://www.ncbi.nlm.nih.gov/gene/?term=YE2660
YE2661	YE2661	fbpC	fbpC	2880496	2881587	+	ferric transporter ATP-binding subunit	Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import	gene	gene2596	http://www.ncbi.nlm.nih.gov/gene/?term=YE2661
YE2662	YE2662		YE2662	2882443	2883075	+	two-component response regulator		gene	gene2598	http://www.ncbi.nlm.nih.gov/gene/?term=YE2662
YE2663	YE2663		YE2663	2883050	2886874	+	virulence sensor protein	Similar to Bordetella pertussis virulence sensor protein BvgS SWALL:BVGS_BORPE (SWALL:P16575) (1238 aa) fasta scores: E(): 8.4e-91%2C 29.87 38d in 1242 aa%2C and to Bordetella bronchiseptica virulence sensor protein BvgS SWALL:BVGS_BORBR (SWALL:P26762) (1238 aa) fasta scores: E(): 1.3e-89%2C 29.23 38d in 1245 aa	gene	gene2599	http://www.ncbi.nlm.nih.gov/gene/?term=YE2663
YE2664	YE2664		YE2664	2887252	2887782	+	fimbrial protein		gene	gene2600	http://www.ncbi.nlm.nih.gov/gene/?term=YE2664
YE2665	YE2665		YE2665	2887875	2888609	+	pili assembly chaperone		gene	gene2601	http://www.ncbi.nlm.nih.gov/gene/?term=YE2665
YE2666	YE2666		YE2666	2888658	2891282	+	fimbrial usher protein		gene	gene2602	http://www.ncbi.nlm.nih.gov/gene/?term=YE2666
YE2667	YE2667		YE2667	2891387	2892631	+	hypothetical protein		gene	gene2603	http://www.ncbi.nlm.nih.gov/gene/?term=YE2667
YE2668	YE2668		YE2668	2892628	2893368	+	pili assembly chaperone		gene	gene2604	http://www.ncbi.nlm.nih.gov/gene/?term=YE2668
YE2669	YE2669		YE2669	2893724	2894614	-	2-dehydropantoate 2-reductase	ketopantoate reductase%3B catalyzes the NADPH reduction of ketopantoate to pantoate%3B functions in pantothenate (vitamin B5) biosynthesis	gene	gene2606	http://www.ncbi.nlm.nih.gov/gene/?term=YE2669
YE2669a	YE2669a		YE2669a	2894937	2895395	-	GNAT family acetyltransferase		gene	gene2607	http://www.ncbi.nlm.nih.gov/gene/?term=YE2669a
YE2670	YE2670		YE2670	2895497	2896978	+	GntR family transcriptional regulator		gene	gene2608	http://www.ncbi.nlm.nih.gov/gene/?term=YE2670
YE2671	YE2671		YE2671	2897247	2897555	-	hypothetical protein	Similar to the N-terminal regions of Agrobacterium tumefaciens short-chain dehydrogenase ATU5444 or AGR_PAT_651 SWALL:Q8UJN2 (EMBL:AE008965) (287 aa) fasta scores: E(): 1.3e-09%2C 48.93 38d in 94 aa%2C and Rhizobium meliloti putative oxidoreductase protein RB0207 or SMB20214 SWALL:Q92WX0 (EMBL:AL603642) (267 aa) fasta scores: E(): 2.6e-05%2C 46.47 38d in 71 aa. Possible gene remnant	gene	gene2609	http://www.ncbi.nlm.nih.gov/gene/?term=YE2671
YE2672	YE2672		YE2672	2897703	2898287	+	TetR family transcription regulatory protein	Similar to Rhizobium meliloti putative transcriptional regulator RA1038 or SMA1887 SWALL:Q92Y50 (EMBL:AE007290) (200 aa) fasta scores: E(): 2.1e-23%2C39.15 38d in 189 aa%2C and to Rhizobium loti transcriptional regulator MLR2831 SWALL:Q98HK7 (EMBL:AP003000) (193 aa) fasta scores: E(): 3.6e-22%2C 37.83 38d in 185 aa	gene	gene2610	http://www.ncbi.nlm.nih.gov/gene/?term=YE2672
YE2673	YE2673		YE2673	2898367	2899341	-	chemotaxis protein	Similar to Bacillus subtilis chemotaxis protein CheV SWALL:CHEV_BACSU (SWALL:P37599) (303 aa) fasta scores: E(): 3.7e-15%2C 29.66 38d in 300 aa%2C and to Salmonella typhimurium putative chemotaxis signal transduction protein STM2314 SWALL:Q8ZNE6 (EMBL:AE008803) (333 aa) fasta scores: E(): 1.7e-78%2C 66.87 38d in 323 aa	gene	gene2611	http://www.ncbi.nlm.nih.gov/gene/?term=YE2673
YE2674	YE2674		YE2674	2899520	2900692	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein PA2315 SWALL:Q9I1G0 (EMBL:AE004657) (391 aa) fasta scores: E(): 5.9e-86%2C 62.36 38d in 372 aa%2C and to Pseudomonas marginata esterase EstB SWALL:Q9KX40 (EMBL:U33634) (392 aa) fasta scores: E(): 1.2e-68%2C 51.26 id in 394 aa	gene	gene2612	http://www.ncbi.nlm.nih.gov/gene/?term=YE2674
YE2675	YE2675		YE2675	2900763	2901524	-	DeoR family regulatory protein	Similar to Pseudomonas aeruginosa glycerol-3-phosphate regulon repressor GlpR SWALL:GLPR_PSEAE (SWALL:Q51391) (251 aa) fasta scores: E(): 2.4e-17%2C 28.96 38d in 252 aa%2C and to Salmonella typhi DeoR family regulatory protein STY4412 SWALL:Q8Z1V2 (EMBL:AL627282) (252 aa) fasta scores: E(): 9e-45%2C 54.31 id in 232 aa	gene	gene2613	http://www.ncbi.nlm.nih.gov/gene/?term=YE2675
YE2676	YE2676		YE2676	2901629	2902438	-	haloacid dehalogenase-like hydrolase	Similar to Listeria monocytogenes hypothetical protein LMO0272 SWALL:Q8YA87 (EMBL:AL591974) (270 aa) fasta scores: E(): 5.5e-25%2C 31.57 38d in 266 aa%2C and to Listeria innocua hypothetical protein LIN0298 SWALL:Q92F10 (EMBL:AL596164) (270 aa) fasta scores: E(): 5.5e-25%2C 31.2 id in 266 aa	gene	gene2614	http://www.ncbi.nlm.nih.gov/gene/?term=YE2676
YE2677	YE2677		YE2677	2902618	2903457	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein STY4414 SWALL:Q8Z1V0 (EMBL:AL627282) (279 aa) fasta scores: E(): 5.3e-78%2C 78.85 38d in 279 aa%2C and weakly similar to Methanosarcina acetivorans 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methyliden eamino] imidazole-4-carboxamide isomerase MA0218 SWALL:AAM03671 (EMBL:AE010680) (245 aa) fasta scores: E(): 0.064%2C 24.7 38d in 255 aa	gene	gene2615	http://www.ncbi.nlm.nih.gov/gene/?term=YE2677
YE2678	YE2678		YE2678	2903500	2905104	-	phosphotransferase system protein	Similar to Salmonella typhi putative membrane protein STY4415 SWALL:Q8Z1U9 (EMBL:AL627282) (492 aa) fasta scores: E(): 4.4e-130%2C 75.91 38d in 494 aa. C-terminal region is similar to Escherichia coli PTS system%2C fructose-like-2 IIC component FrwC SWALL:PTWC_ECOLI (SWALL:P32672) (359 aa) fasta scores: E(): 0.0007%2C 25.3 38d in 328 aa. CDS is extended at the N-terminus in comparison to the S. typhi protein. Possible alternative translational start site	gene	gene2616	http://www.ncbi.nlm.nih.gov/gene/?term=YE2678
YE2679	YE2679		YE2679	2905488	2906885	-	hypothetical protein		gene	gene2617	http://www.ncbi.nlm.nih.gov/gene/?term=YE2679
YE2680	YE2680	argG	argG	2907123	2908487	+	argininosuccinate synthase	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis	gene	gene2618	http://www.ncbi.nlm.nih.gov/gene/?term=YE2680
YE2681	YE2681		YE2681	2908619	2909098	-	hypothetical protein		gene	gene2619	http://www.ncbi.nlm.nih.gov/gene/?term=YE2681
YE2682	YE2682		YE2682	2909098	2909925	-	hypothetical protein		gene	gene2620	http://www.ncbi.nlm.nih.gov/gene/?term=YE2682
YE2683	YE2683		YE2683	2909951	2910793	-	hypothetical protein		gene	gene2621	http://www.ncbi.nlm.nih.gov/gene/?term=YE2683
YE2683a	YE2683a		YE2683a	2910799	2911059	-	hypothetical protein		gene	gene2622	http://www.ncbi.nlm.nih.gov/gene/?term=YE2683a
YE2684	YE2684		YE2684	2911171	2913885	-	hypothetical protein	The glycine rich C-teminus which also carries multiple copies of the repeat PEPTD|PEPTV	gene	gene2623	http://www.ncbi.nlm.nih.gov/gene/?term=YE2684
YE2685	YE2685		YE2685	2914034	2917867	-	hypothetical protein		gene	gene2624	http://www.ncbi.nlm.nih.gov/gene/?term=YE2685
YE2686	YE2686		YE2686	2917876	2919252	-	OmpA family protein	Similar to Salmonella typhimurium%2C and Salmonella enterica subsp. enterica serovar Typhimurium putative outer membrane protein%2C OmpA family Stm0282 or sciP SWALL:Q93IS0 (EMBL:AE008707) (434 aa) fasta scores: E(): 3.9e-56%2C 43.95 38d in 389 aa%2C and to Salmonella enterica subsp. enterica serovar Typhi Ty2 putative membrane protein t2581 SWALL:AAO70159 (EMBL:AE016842) (433 aa) fasta scores: E(): 1.2e-55%2C 43.95 38d in 389 aa	gene	gene2625	http://www.ncbi.nlm.nih.gov/gene/?term=YE2686
YE2687	YE2687		YE2687	2919249	2920598	-	hypothetical protein		gene	gene2626	http://www.ncbi.nlm.nih.gov/gene/?term=YE2687
YE2688	YE2688		YE2688	2920602	2921153	-	hypothetical protein		gene	gene2627	http://www.ncbi.nlm.nih.gov/gene/?term=YE2688
YE2689	YE2689		YE2689	2921360	2921845	-	hypothetical protein		gene	gene2628	http://www.ncbi.nlm.nih.gov/gene/?term=YE2689
YE2690	YE2690		YE2690	2922177	2923604	-	hypothetical protein		gene	gene2629	http://www.ncbi.nlm.nih.gov/gene/?term=YE2690
YE2691	YE2691		YE2691	2923697	2924221	-	hypothetical protein		gene	gene2630	http://www.ncbi.nlm.nih.gov/gene/?term=YE2691
YE2692	YE2692		YE2692	2924326	2924928	-	fimbrial protein		gene	gene2631	http://www.ncbi.nlm.nih.gov/gene/?term=YE2692
YE2693	YE2693		YE2693	2924913	2927588	-	outer membrane usher protein		gene	gene2632	http://www.ncbi.nlm.nih.gov/gene/?term=YE2693
YE2694	YE2694		YE2694	2927692	2928489	-	pili chaperone protein		gene	gene2633	http://www.ncbi.nlm.nih.gov/gene/?term=YE2694
YE2695	YE2695		YE2695	2928597	2929157	-	frimbrial protein		gene	gene2634	http://www.ncbi.nlm.nih.gov/gene/?term=YE2695
YE2696	YE2696	clpB5	clpB5	2929324	2931996	-	Clp ATPase		gene	gene2635	http://www.ncbi.nlm.nih.gov/gene/?term=YE2696
YE2697	YE2697		YE2697	2932716	2934596	+	hypothetical protein		gene	gene2636	http://www.ncbi.nlm.nih.gov/gene/?term=YE2697
YE2698	YE2698		YE2698	2934596	2935621	+	hypothetical protein		gene	gene2637	http://www.ncbi.nlm.nih.gov/gene/?term=YE2698
YE2699	YE2699		YE2699	2935696	2936859	+	hypothetical protein		gene	gene2638	http://www.ncbi.nlm.nih.gov/gene/?term=YE2699
YE2700	YE2700		YE2700	2936866	2937870	+	fimbrial protein		gene	gene2639	http://www.ncbi.nlm.nih.gov/gene/?term=YE2700
YE2701	YE2701		YE2701	2937909	2939246	+	hypothetical protein		gene	gene2640	http://www.ncbi.nlm.nih.gov/gene/?term=YE2701
YE2702	YE2702		YE2702	2939243	2939890	+	hypothetical protein		gene	gene2641	http://www.ncbi.nlm.nih.gov/gene/?term=YE2702
YE2703	YE2703		YE2703	2939891	2941561	+	hypothetical protein		gene	gene2642	http://www.ncbi.nlm.nih.gov/gene/?term=YE2703
YE2704	YE2704		YE2704	2941568	2942053	+	hypothetical protein		gene	gene2643	http://www.ncbi.nlm.nih.gov/gene/?term=YE2704
YE2705	YE2705		YE2705	2942187	2942789	-	LuxR family regulatory protein		gene	gene2644	http://www.ncbi.nlm.nih.gov/gene/?term=YE2705
YE2706	YE2706		YE2706	2943688	2944173	-			gene	gene2645	http://www.ncbi.nlm.nih.gov/gene/?term=YE2706
YE2707	YE2707	cobT	cobT	2944349	2945407	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5%2C6-dimethylbenzimidazole	gene	gene2646	http://www.ncbi.nlm.nih.gov/gene/?term=YE2707
YE2708	YE2708	cobC	cobC	2945430	2946062	-	alpha-ribazole-5'-phosphate phosphatase	Similar to Escherichia coli alpha-ribazole-5'-phosphate phosphatase CobC or PhpB SWALL:COBC_ECOLI (SWALL:P52086) (203 aa) fasta scores: E(): 4.9e-22%2C 48.07 38d in 208 aa%2C and to Salmonella typhimurium alpha-ribazole-5'-phosphate phosphatase STM0643 SWALL:COBC_SALTY (SWALL:P39701) (202 aa) fasta scores: E(): 1.1e-21%2C 49.04 38d in 210 aa	gene	gene2647	http://www.ncbi.nlm.nih.gov/gene/?term=YE2708
YE2709	YE2709	cobS	cobS	2946100	2946846	-	cobalamin synthase	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole	gene	gene2648	http://www.ncbi.nlm.nih.gov/gene/?term=YE2709
YE2710	YE2710	cobU	cobU	2946843	2947388	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP	gene	gene2649	http://www.ncbi.nlm.nih.gov/gene/?term=YE2710
YE2711	YE2711	cbiP	cbiP	2947385	2948923	-	cobyric acid synthase	catalyzes amidations at positions B%2C D%2C E%2C and G on adenosylcobyrinic A%2CC-diamide. NH(2) groups are provided by glutamine%2C and one molecule of ATP is hydrogenolyzed for each amidation	gene	gene2650	http://www.ncbi.nlm.nih.gov/gene/?term=YE2711
YE2712	YE2712	cbiO	cbiO	2948935	2949750	-	cobalt transport ATP-binding protein	Similar to Salmonella typhimurium cobalt transport ATP-binding protein CbiO SWALL:CBIO_SALTY (SWALL:Q05596) (271 aa) fasta scores: E(): 8.7e-63%2C 67.77 38d in 270 aa%2Cand to Salmonella typhi putative cobalt transport ATP-binding protein STY2223 SWALL:Q8Z5N5 (EMBL:AL627273) (271 aa) fasta scores: E(): 3.4e-63%2C 68.14 38d in 270 aa	gene	gene2651	http://www.ncbi.nlm.nih.gov/gene/?term=YE2712
YE2713	YE2713	cbiQ	cbiQ	2949762	2950439	-	cobalt transport protein	Similar to Salmonella typhimurium cobalt transport protein CbiQ SWALL:CBIQ_SALTY (SWALL:Q05598) (225 aa) fasta scores: E(): 5.5e-56%2C 58.66 38d in 225 aa%2C and to Salmonella typhi putative cobalt transport protein STY2224 SWALL:Q8Z5N4 (EMBL:AL627273) (225 aa) fasta scores: E(): 5.5e-56%2C 58.66 38d in 225 aa	gene	gene2652	http://www.ncbi.nlm.nih.gov/gene/?term=YE2713
YE2714	YE2714	cbiM	cbiM	2950709	2951440	-	cobalt transport protein CbiM	catalyzes the ATP-dependent transport of cobalt	gene	gene2653	http://www.ncbi.nlm.nih.gov/gene/?term=YE2714
YE2715	YE2715	cbiL	cbiL	2951617	2952330	-	cobalt-precorrin-2 C(20)-methyltransferase	catalyzes the formation of precorrin-3A from precorrin-2	gene	gene2654	http://www.ncbi.nlm.nih.gov/gene/?term=YE2715
YE2716	YE2716	cbiK	cbiK	2952330	2953124	-	cobalt chelatase	Similar to Salmonella typhimurium cobalt chelatase cbiK SWALL:CBIK_SALTY (SWALL:Q05592) (264 aa) fasta scores: E(): 5.8e-64%2C 66.66 38d in 264 aa%2C and to Listeria monocytogenes CbiK protein SWALL:Q8Y7R9 (EMBL:AL591978) (261 aa) fasta scores: E(): 7.8e-53%2C 54.26 38d in 258 aa	gene	gene2655	http://www.ncbi.nlm.nih.gov/gene/?term=YE2716
YE2717	YE2717	cbiJ	cbiJ	2953121	2953948	-	cobalt-precorrin-6x reductase	CobK/CbiJ%3B there are 2 pathways for cobalamin (vitamin B12) production%2C one aerobic (ex. P. denitrificans)%2C the other anaerobic (ex. S. typhimurium)%3B the CobK/CbiJ perform similar reactions in both%3B the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur%3B CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6	gene	gene2656	http://www.ncbi.nlm.nih.gov/gene/?term=YE2717
YE2718	YE2718	cbiH	cbiH	2953945	2954670	-	precorrin-3 C17-methyltransferase	Similar to Salmonella typhimurium precorrin-3B C17-methyltransferase CbiH SWALL:CBIH_SALTY (SWALL:Q05590) (241 aa) fasta scores: E(): 2.1e-78%2C 80.49 38d in 241 aa%2Cand to Salmonella typhi precorrin-3 C17-methyltransferase STY2232 SWALL:Q8Z5N1 (EMBL:AL627273) (241 aa) fasta scores: E(): 1.3e-78%2C 80.91 38d in 241 aa	gene	gene2657	http://www.ncbi.nlm.nih.gov/gene/?term=YE2718
YE2719	YE2719	cbiG	cbiG	2954670	2955725	-	cobalamin biosynthesis protein CbiG	catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3	gene	gene2658	http://www.ncbi.nlm.nih.gov/gene/?term=YE2719
YE2719a	YE2719a	cbiF	cbiF	2955706	2956497	-	precorrin-4 C(11)-methyltransferase	Similar to Salmonella typhimurium%2C and Salmonella typhi precorrin-4 C11-methyltransferase CbiF or STY2234 SWALL:CBIF_SALTY (SWALL:Q05630) (257 aa) fasta scores: E(): 1.1e-73%2C 78.73 38d in 254 aa%2C and to Listeria monocytogenes CbiF protein LMO1197 SWALL:Q8Y7S4 (EMBL:AL591978) (249 aa) fasta scores: E(): 5.2e-59%2C66.39 38d in 247 aa	gene	gene2659	http://www.ncbi.nlm.nih.gov/gene/?term=YE2719a
YE2720	YE2720	cbiT	cbiT	2956490	2957059	-	cobalt-precorrin-6Y C(15)-methyltransferase	catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W%3B decarboxylating	gene	gene2660	http://www.ncbi.nlm.nih.gov/gene/?term=YE2720
YE2721	YE2721	cbiE	cbiE	2957049	2957651	-	cobalt-precorrin-6Y C(5)-methyltransferase	catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a	gene	gene2661	http://www.ncbi.nlm.nih.gov/gene/?term=YE2721
YE2722	YE2722	cbiD	cbiD	2957648	2958814	-	cobalt-precorrin-6A synthase	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A	gene	gene2662	http://www.ncbi.nlm.nih.gov/gene/?term=YE2722
YE2723	YE2723	cbiC	cbiC	2958811	2959458	-	cobalt-precorrin-8X methylmutase	catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin	gene	gene2663	http://www.ncbi.nlm.nih.gov/gene/?term=YE2723
YE2724	YE2724	cobD	cobD	2959472	2960428	-	cobalamin biosynthesis protein	CobD%3B CbiD in Salmonella%3B converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group	gene	gene2664	http://www.ncbi.nlm.nih.gov/gene/?term=YE2724
YE2725	YE2725	cbiA	cbiA	2960425	2961828	-	cobyrinic acid a%2Cc-diamide synthase	responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid	gene	gene2665	http://www.ncbi.nlm.nih.gov/gene/?term=YE2725
YE2726	YE2726	pocR	pocR	2962484	2963386	-	pdu and cob operons regulatory protein	Similar to Salmonella typhimurium regulatory protein PocR SWALL:POCR_SALTY (SWALL:Q05587) (303 aa) fasta scores: E(): 3.3e-96%2C 80.2 38d in 298 aa%2C and to Salmonella typhi pdu/cob regulatory protein STY2241 SWALL:Q8Z5M5 (EMBL:AL627273) (304 aa) fasta scores: E(): 1.9e-95%2C 79.93 38d in 299 aa	gene	gene2666	http://www.ncbi.nlm.nih.gov/gene/?term=YE2726
YE2727	YE2727	pduF	pduF	2963678	2964493	-	propanediol diffusion facilitator	Similar to Salmonella typhimurium propanediol diffusion facilitator PduF SWALL:PDUF_SALTY (SWALL:P37451) (264 aa) fasta scores: E(): 2e-89%2C 81.81 38d in 264 aa%2Cand to Salmonella typhi propanediol diffusion facilitator STY2242 SWALL:Q8Z5M4 (EMBL:AL627273) (264 aa) fasta scores: E(): 2.7e-89%2C 81.81 38d in 264 aa	gene	gene2667	http://www.ncbi.nlm.nih.gov/gene/?term=YE2727
YE2728	YE2728	pduA	pduA	2965247	2965543	+	propanediol utilization protein	Similar to Salmonella typhimurium%2C and Salmonella typhi propanediol utilization protein PduA or STY2243 SWALL:PDUA_SALTY (SWALL:P37448) (94 aa) fasta scores: E(): 5.8e-26%2C 89.01 38d in 91 aa%2C and to Listeria innocua hypothetical protein LIN1123 SWALL:Q92CP8 (EMBL:AL596167) (91 aa) fasta scores: E(): 1.2e-23%2C 83.9 38d in 87 aa	gene	gene2668	http://www.ncbi.nlm.nih.gov/gene/?term=YE2728
YE2729	YE2729	pduB	pduB	2965543	2966370	+	propanediol utilization protein	Similar to Salmonella typhimurium propanediol utilization protein PduB SWALL:PDUB_SALTY (SWALL:P37449) (233 aa) fasta scores: E(): 9.5e-75%2C 90.98 38d in 233 aa%2Cand to Salmonella typhi putative propanediol utilization protein STY2244 SWALL:Q8Z5M3 (EMBL:AL627273) (233 aa) fasta scores: E(): 8.3e-75%2C 91.41 38d in 233 aa. Possible alternative translational start site	gene	gene2669	http://www.ncbi.nlm.nih.gov/gene/?term=YE2729
YE2730	YE2730	pddA	pddA	2966391	2968055	+	propanediol utilization dehydratase large subunit	Similar to Salmonella typhimurium glycerol dehydratase large subunit PduC SWALL:DHAB_SALTY (SWALL:P37450) (554 aa) fasta scores: E(): 2e-206%2C 94.21 id in 553 aa%2C and to Klebsiella oxytoca diol dehydrase PddA SWALL:Q59470 (EMBL:D45071) (554 aa) fasta scores: E(): 1.8e-206%2C 94.21 38d in 553 aa	gene	gene2670	http://www.ncbi.nlm.nih.gov/gene/?term=YE2730
YE2731	YE2731	pddB	pddB	2968068	2968739	+	propanediol utilization dehydratase medium subunit	Similar to Salmonella typhimurium propanediol utilization protein: dehydratase%2C medium subunit PduD SWALL:O31041 (EMBL:AE008790) (224 aa) fasta scores: E(): 2.9e-69%2C 86.6 38d in 224 aa%2C and to Klebsiella oxytoca diol dehydrase PddB SWALL:Q59471 (EMBL:D45071) (224 aa) fasta scores: E(): 6.1e-69%2C 86.6 38d in 224 aa	gene	gene2671	http://www.ncbi.nlm.nih.gov/gene/?term=YE2731
YE2732	YE2732	pddC	pddC	2968754	2969278	+	propanediol utilization dehydratase small subunit	Similar to Salmonella typhimurium propanediol utilization protein: dehydratase%2C small subunit PduE SWALL:O31042 (EMBL:AE008790) (173 aa) fasta scores: E(): 3.7e-47%2C 78.73 38d in 174 aa%2C and to Klebsiella oxytoca diol dehydrase PddC SWALL:Q59472 (EMBL:D45071) (173 aa) fasta scores: E(): 2.8e-47%2C 78.16 38d in 174 aa	gene	gene2672	http://www.ncbi.nlm.nih.gov/gene/?term=YE2732
YE2733	YE2733	ddrA	ddrA	2969606	2971432	+	propanediol utilization diol dehydratase reactivation protein	Similar to Salmonella typhimurium propanediol utilization protein: diol dehydratase reactivation PduG SWALL:O31043 (EMBL:AE008790) (610 aa) fasta scores: E(): 8.3e-170%2C 81.81 38d in 605 aa%2C and to Klebsiella oxytoca diol dehydratase-reactivating factor large subunit DdrA SWALL:O68195 (EMBL:AF017781) (610 aa) fasta scores: E(): 1.8e-169%2C 81.81 38d in 605 aa	gene	gene2673	http://www.ncbi.nlm.nih.gov/gene/?term=YE2733
YE2734	YE2734	ddrB	ddrB	2971429	2971770	+	propanediol utilization diol dehydratase reactivation protein	Similar to Salmonella typhimurium propanediol utilization protein: diol dehydratase reactivation PduH SWALL:Q8ZNR6 (EMBL:AE008790) (116 aa) fasta scores: E(): 2.2e-19%2C 50.44 38d in 113 aa%2C and to Klebsiella oxytoca diol dehydratase-reactivating factor small subunit DdrB SWALL:O68196 (EMBL:AF017781) (125 aa) fasta scores: E(): 3e-18%2C 48.67 38d in 113 aa	gene	gene2674	http://www.ncbi.nlm.nih.gov/gene/?term=YE2734
YE2735	YE2735	pduA	pduA	2971802	2972077	+	propanediol utilization protein	Similar to Salmonella typhimurium and Salmonella typhi propanediol utilization protein PduA or STY2243 SWALL:PDUA_SALTY (SWALL:P37448) (94 aa) fasta scores: E(): 5.7e-23%2C 84.7 38d in 85 aa%2C and to Salmonella typhimurium ethanolamine utilization protein EutM or CchA SWALL:EUTM_SALTY (SWALL:P41791) (96 aa) fasta scores: E(): 6.6e-18%2C 66.66 38d in 87 aa	gene	gene2675	http://www.ncbi.nlm.nih.gov/gene/?term=YE2735
YE2736	YE2736	pduK	pduK	2972099	2972701	+	propanediol utilization polyhedral bodies protein	Similar to Salmonella typhimurium propanediol utilization protein: polyhedral bodies PduK SWALL:Q9XDN6 (EMBL:AE008790) (160 aa) fasta scores: E(): 5.1e-17%2C47.23 38d in 199 aa%2C and to Listeria monocytogenes hypothetical protein LMO1158 SWALL:Q8Y7W1 (EMBL:AL591978) (145 aa) fasta scores: E(): 1.7e-09%2C 30.76 38d in 195 aa. CDS contains extra residues relative to orthologues	gene	gene2676	http://www.ncbi.nlm.nih.gov/gene/?term=YE2736
YE2737	YE2737	pduL	pduL	2972701	2973348	+	propanediol utilization protein	Similar to Salmonella typhimurium propanediol utilization protein PduL: SWALL:Q9XDN5 (EMBL:AE008790) (210 aa) fasta scores: E(): 2e-58%2C 77.29 38d in 207 aa%2Cand to Listeria innocua hypothetical protein LIN1124 SWALL:Q92CP7 (EMBL:AL596167) (211 aa) fasta scores: E(): 3.2e-34%2C 50.71 38d in 211 aa	gene	gene2677	http://www.ncbi.nlm.nih.gov/gene/?term=YE2737
YE2738	YE2738	pduM	pduM	2973345	2973842	+	propanediol utilization protein	Similar to Salmonella typhimurium propanediol utilization protein PduM SWALL:Q9XDN4 (EMBL:AE008790) (163 aa) fasta scores: E(): 3.7e-20%2C 40.12 38d in 157 aa%2C and to Salmonella typhi hypothetical protein STY2253 SWALL:Q8Z5L5 (EMBL:AL627273) (163 aa) fasta scores: E(): 9.6e-20%2C 39.49 38d in 157 aa	gene	gene2678	http://www.ncbi.nlm.nih.gov/gene/?term=YE2738
YE2739	YE2739	pduN	pduN	2973846	2974121	+	propanediol utilization polyhedral bodies protein	Similar to Salmonella typhimurium propanediol utilization protein: polyhedral bodies PduN SWALL:Q9XDN3 (EMBL:AE008790) (91 aa) fasta scores: E(): 2.5e-21%2C 74.44 id in 90 aa%2C and to Listeria monocytogenes hypothetical protein LMO1163 SWALL:Q8Y7V6 (EMBL:AL591978) (87 aa) fasta scores: E(): 4e-12%2C 55.17 38d in 87 aa	gene	gene2679	http://www.ncbi.nlm.nih.gov/gene/?term=YE2739
YE2740	YE2740	pduO	pduO	2974137	2975153	+	propanediol utilization protein	Similar to Salmonella typhimurium propanediol utilization protein: B12 related PduO SWALL:Q8ZNR5 (EMBL:AE008790) (336 aa) fasta scores: E(): 2.6e-77%2C63.28 38d in 335 aa%2C and to Listeria innocua highly similar to salmonella enterica PduO protein LIN1128 SWALL:Q92CP3 (EMBL:AL596167) (331 aa) fasta scores: E(): 1e-57%2C 49.7 38d in 334 aa	gene	gene2680	http://www.ncbi.nlm.nih.gov/gene/?term=YE2740
YE2741	YE2741	pduP	pduP	2975153	2976541	+	propanediol utilization CoA-dependent propionaldehyde dehydrogenase	Similar to Salmonella typhimurium propanediol utilization protein: CoA-dependent propionaldehyde dehydrogenase PduP SWALL:Q9XDN1 (EMBL:AE008790) (464 aa) fasta scores: E(): 3.6e-139%2C 79.18 38d in 466 aa%2C and to Listeria innocua hypothetical protein LIN1129 SWALL:Q92CP2 (EMBL:AL596167) (469 aa) fasta scores: E(): 4.9e-103%2C58.93 38d in 470 aa	gene	gene2681	http://www.ncbi.nlm.nih.gov/gene/?term=YE2741
YE2742	YE2742	pduQ	pduQ	2976552	2977667	+	propanediol utilization propanol dehydrogenase	Similar to Salmonella typhimurium propanediol utilization protein: propanol dehydrogenase PduQ WALL:Q9XDN0 (EMBL:AE008790) (370 aa) fasta scores: E(): 6.6e-101%2C 70.19 38d in 369 aa%2C and to Listeria innocua hypothetical protein LIN1130 SWALL:Q92CP1 (EMBL:AL596167) (372 aa) fasta scores: E(): 1.3e-64%2C 47.97 38d in 371 aa	gene	gene2682	http://www.ncbi.nlm.nih.gov/gene/?term=YE2742
YE2743	YE2743	pduS	pduS	2977690	2979051	+	NADH dehydrogenase	Similar to Salmonella typhimurium propanediol utilization protein: polyhedral bodies PduS SWALL:Q9XDM9 (EMBL:AE008790) (451 aa) fasta scores: E(): 1.1e-122%2C72.14 38d in 438 aa%2C and to Listeria monocytogenes hypothetical protein LMO1142 SWALL:Q8Y7X7 (EMBL:AL591978) (454 aa) fasta scores: E(): 6e-48%2C 37.05 38d in 448 aa	gene	gene2683	http://www.ncbi.nlm.nih.gov/gene/?term=YE2743
YE2744	YE2744	pduT	pduT	2979077	2979634	+	propanediol utilization polyhedral bodies protein	Similar to Salmonella typhimurium propanediol utilization protein: polyhedral bodies PduT SWALL:Q9XDM8 (EMBL:AE008790) (184 aa) fasta scores: E(): 4.1e-55%2C73.22 38d in 183 aa%2C and to Listeria monocytogenes hypothetical protein LMO1143 SWALL:Q8Y7X6 (EMBL:AL591978) (184 aa) fasta scores: E(): 1.9e-23%2C 41.01 38d in 178 aa	gene	gene2684	http://www.ncbi.nlm.nih.gov/gene/?term=YE2744
YE2745	YE2745	pduU	pduU	2979634	2979984	+	propanediol utilization protein	Similar to Salmonella typhimurium and Salmonella typhi propanediol utilization protein PduU or STY2260 SWALL:PDUU_SALTY (SWALL:Q9XDM7) (116 aa) fasta scores: E(): 5.6e-32%2C 80.17 38d in 116 aa%2C and to Listeria innocua hypothetical protein Lin1108 lin1108 SWALL:Q92CR3 (EMBL:AL596167) (116 aa) fasta scores: E(): 1.3e-26%2C 68.1 id in 116 aa	gene	gene2685	http://www.ncbi.nlm.nih.gov/gene/?term=YE2745
YE2746	YE2746	pduV	pduV	2979989	2980423	+	hypothetical protein	Similar to Salmonella typhimurium propanediol utilization protein PduV SWALL:PDUV_SALTY (SWALL:Q9XDM6) (150 aa) fasta scores: E(): 5.4e-28%2C 61.97 38d in 142 aa%2Cand to Listeria monocytogenes hypothetical protein LMO1145 SWALL:Q8Y7X4 (EMBL:AL591978) (143 aa) fasta scores: E(): 3.7e-16%2C 39.71 38d in 141 aa	gene	gene2686	http://www.ncbi.nlm.nih.gov/gene/?term=YE2746
YE2747	YE2747	pduW	pduW	2980451	2981689	+	propionate kinase	involved in coenzyme B(12)-dependent 1%2C 2-propanediol degradation%3B important for the synthesis of propionyl coenzyme A during growth on 1%2C2-propanediol	gene	gene2687	http://www.ncbi.nlm.nih.gov/gene/?term=YE2747
YE2748	YE2748	cobA	cobA	2981698	2982465	+	uroporphyrin-III C-methyltransferase	Similar to Bacillus megaterium uroporphyrin-III C-methyltransferase CobA SWALL:SUMT_BACME (SWALL:P29928) (238 aa) fasta scores: E(): 4.7e-40%2C 49.57 38d in 234 aa. Similar to the N-terminal region of Listeria innocua hypothetical protein LIN1164 SWALL:Q92CK7 (EMBL:AL596167) (493 aa) fasta scores: E(): 1.2e-53%2C 60.4 38d in 245 aa%2Cand to the C-terminal region of Escherichia coli siroheme synthase [includes: uroporphyrin-III C-methyltransferase%3B precorrin-2 oxidase ferrochelatase] CysG SWALL:CYSG_ECOLI (SWALL:P11098) (457 aa) fasta scores: E(): 1.3e-39%2C 50.62 id in 239 aa	gene	gene2688	http://www.ncbi.nlm.nih.gov/gene/?term=YE2748
YE2749	YE2749	cobD	cobD	2982513	2983586	+	threonine-phosphate decarboxylase	cobalamin biosynthesis protein%3B decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate%2C the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin%3B structurally similar to histidinol phosphate aminotransferase	gene	gene2689	http://www.ncbi.nlm.nih.gov/gene/?term=YE2749
YE2750	YE2750	pduX	pduX	2983579	2984439	+	GHMP kinase	Similar to Salmonella typhimurium propanediol utilization protein PduX SWALL:Q9XDM4 (EMBL:AE008790) (300 aa) fasta scores: E(): 7.1e-66%2C 59.44 38d in 286 aa. Weakly similar to Bacillus subtilis homoserine kinase ThrB SWALL:KHSE_BACSU (SWALL:P04948) (309 aa) fasta scores: E(): 2.1%2C 24.13 38d in 232 aa	gene	gene2690	http://www.ncbi.nlm.nih.gov/gene/?term=YE2750
YE2751	YE2751		YE2751	2984805	2985788	+	periplasmic binding protein		gene	gene2691	http://www.ncbi.nlm.nih.gov/gene/?term=YE2751
YE2752	YE2752		YE2752	2986055	2987470	+	ABC transporter ATP-binding protein		gene	gene2692	http://www.ncbi.nlm.nih.gov/gene/?term=YE2752
YE2753	YE2753		YE2753	2987463	2988485	+	branched-chain amino acid transport system permease		gene	gene2693	http://www.ncbi.nlm.nih.gov/gene/?term=YE2753
YE2754	YE2754		YE2754	2988488	2989471	+	ABC transporter permease		gene	gene2694	http://www.ncbi.nlm.nih.gov/gene/?term=YE2754
YE2755	YE2755		YE2755	2989561	2989878	-	hypothetical protein		gene	gene2695	http://www.ncbi.nlm.nih.gov/gene/?term=YE2755
YE2756	YE2756		YE2756	2990042	2991100	-	hypothetical protein	Similar to Salmonella typhimurium putative inner membrane protein STM2060 SWALL:Q8ZNR4 (EMBL:AE008791) (352 aa) fasta scores: E(): 3.6e-81%2C 58.8 38d in 352 aa%2C and to Salmonella typhi putative membrane protein STY2265 SWALL:Q8Z5K6 (EMBL:AL627273) (352 aa) fasta scores: E(): 1.5e-80%2C 58.23 38d in 352 aa	gene	gene2696	http://www.ncbi.nlm.nih.gov/gene/?term=YE2756
YE2757	YE2757		YE2757	2991396	2992505	-	hypothetical protein		gene	gene2697	http://www.ncbi.nlm.nih.gov/gene/?term=YE2757
YE2758	YE2758	sbcB	sbcB	2992871	2994301	+	exonuclease I	Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates	gene	gene2698	http://www.ncbi.nlm.nih.gov/gene/?term=YE2758
YE2759	YE2759	yeeF	yeeF	2994485	2995873	-	amino acid permease		gene	gene2699	http://www.ncbi.nlm.nih.gov/gene/?term=YE2759
YE2760	YE2760		YE2760	2995863	2996078	-	hypothetical protein	No significant database matches. Doubtful CDS	gene	gene2700	http://www.ncbi.nlm.nih.gov/gene/?term=YE2760
YE2761	YE2761		YE2761	2996327	2997418	-	hypothetical protein	member of the iron-containing alcohol dehydrogenase family%3B unknown function	gene	gene2701	http://www.ncbi.nlm.nih.gov/gene/?term=YE2761
YE2762	YE2762		YE2762	2997638	2999149	+	ABC transporter ATP-binding protein	Similar to Bacillus subtilis ribose transport ATP-binding protein RbsA SWALL:RBSA_BACSU (SWALL:P36947) (493 aa) fasta scores: E(): 4e-57%2C 36.08 38d in 496 aa%2Cand to Yersinia pestis sugar transport ATP-binding protein YPO3964 SWALL:Q8ZA54 (EMBL:AJ414160) (507 aa) fasta scores: E(): 2.2e-57%2C 37.52 38d in 493 aa	gene	gene2702	http://www.ncbi.nlm.nih.gov/gene/?term=YE2762
YE2763	YE2763		YE2763	2999146	3000144	+	ribose transport system permease		gene	gene2703	http://www.ncbi.nlm.nih.gov/gene/?term=YE2763
YE2764	YE2764		YE2764	3000319	3001146	-	hypothetical protein		gene	gene2704	http://www.ncbi.nlm.nih.gov/gene/?term=YE2764
YE2765	YE2765	hisG	hisG	3001692	3002591	+	ATP phosphoribosyltransferase	long form of enzyme%3B catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate%3B crucial role in histidine biosynthesis%3B forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors	gene	gene2705	http://www.ncbi.nlm.nih.gov/gene/?term=YE2765
YE2766	YE2766	hisD	hisD	3002595	3003920	+	histidinol dehydrogenase	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer	gene	gene2706	http://www.ncbi.nlm.nih.gov/gene/?term=YE2766
YE2767	YE2767	hisC	hisC	3003917	3005041	+	histidinol-phosphate aminotransferase	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis	gene	gene2707	http://www.ncbi.nlm.nih.gov/gene/?term=YE2767
YE2768	YE2768	hisB	hisB	3005038	3006105	+	imidazole glycerol-phosphate dehydratase/histidinol phosphatase	catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate	gene	gene2708	http://www.ncbi.nlm.nih.gov/gene/?term=YE2768
YE2769	YE2769	hisH	hisH	3006105	3006695	+	imidazole glycerol phosphate synthase subunit HisH	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamide ribonucleotide%2C and glutamate in histidine biosynthesis%3B the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide	gene	gene2709	http://www.ncbi.nlm.nih.gov/gene/?term=YE2769
YE2770	YE2770	hisA	hisA	3006701	3007438	+	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l-(5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide	gene	gene2710	http://www.ncbi.nlm.nih.gov/gene/?term=YE2770
YE2771	YE2771	hisF	hisF	3007420	3008196	+	imidazole glycerol phosphate synthase subunit HisF	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamideribonucleotide and glutamate%3B the HisF subunit acts as a cyclase	gene	gene2711	http://www.ncbi.nlm.nih.gov/gene/?term=YE2771
YE2772	YE2772	hisI	hisI	3008190	3008804	+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis	gene	gene2712	http://www.ncbi.nlm.nih.gov/gene/?term=YE2772
YE2773	YE2773	gnd	gnd	3009059	3010465	-	6-phosphogluconate dehydrogenase	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate	gene	gene2713	http://www.ncbi.nlm.nih.gov/gene/?term=YE2773
YE2774	YE2774		YE2774	3010777	3012114	+	transposase for insertion sequence element IS1660	ighly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 2e-165%2C 89.72 id in 438 aa%2C and to Pantoea agglomerans nsertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 1.8e-86%2C 52.42 38d in 433 aa	gene	gene2714	http://www.ncbi.nlm.nih.gov/gene/?term=YE2774
YE2775	YE2775		YE2775	3012170	3012956	+			gene	gene2715	http://www.ncbi.nlm.nih.gov/gene/?term=YE2775
YE2777	YE2777	galF	galF	3013002	3013895	-	UTP-glucose-1-phosphate uridylyltransferase		gene	gene2716	http://www.ncbi.nlm.nih.gov/gene/?term=YE2777
YE2778	YE2778	galU	galU	3013961	3014842	-	UTP-glucose-1-phosphate uridylyltransferase		gene	gene2717	http://www.ncbi.nlm.nih.gov/gene/?term=YE2778
YE2779	YE2779		YE2779	3015331	3016917	+	hypothetical protein		gene	gene2718	http://www.ncbi.nlm.nih.gov/gene/?term=YE2779
YE2780	YE2780	dcuC	dcuC	3017011	3018369	-	C4-dicarboxylate transporter DcuC	responsible for the transport of C4-dicarboxylates during anaerobic growth	gene	gene2719	http://www.ncbi.nlm.nih.gov/gene/?term=YE2780
YE2781	YE2781		YE2781	3018701	3020548	-	assembly protein	YegA%3B inner membrane protein involved in the assembly of outer membrane proteins (OMPs)%3B asmA-null mutants show low lipopolysaccharide (LPS) levels%2C suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity%2C resulting on altered assembly of OMPs	gene	gene2720	http://www.ncbi.nlm.nih.gov/gene/?term=YE2781
YE2782	YE2782	dcd	dcd	3020613	3021194	-	deoxycytidine triphosphate deaminase	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis	gene	gene2721	http://www.ncbi.nlm.nih.gov/gene/?term=YE2782
YE2783	YE2783	b2066	b2066	3021280	3021921	-	uridine kinase	functions in pyrimidine salvage%3B pyrimidine ribonucleoside kinase%3B phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor	gene	gene2722	http://www.ncbi.nlm.nih.gov/gene/?term=YE2783
YE2784	YE2784		YE2784	3022059	3023171	-	ATPase		gene	gene2723	http://www.ncbi.nlm.nih.gov/gene/?term=YE2784
YE2785	YE2785	metG	metG	3023451	3025478	+	methionyl-tRNA synthetase	methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content	gene	gene2724	http://www.ncbi.nlm.nih.gov/gene/?term=YE2785
YE2786	YE2786		YE2786	3025558	3026394	-	hypothetical protein	Poor database matches. C-terminal region is similar to Yersinia pestis putative membrane protein YPO1518 SWALL:Q8ZG02 (EMBL:AJ414148) (175 aa) fasta scores: E(): 7.8e-41%2C 63.42 38d in 175 aa	gene	gene2725	http://www.ncbi.nlm.nih.gov/gene/?term=YE2786
YE2787	YE2787		YE2787	3026840	3027931	+	sugar ABC transporter		gene	gene2726	http://www.ncbi.nlm.nih.gov/gene/?term=YE2787
YE2788	YE2788		YE2788	3028130	3029383	+	hypothetical protein		gene	gene2727	http://www.ncbi.nlm.nih.gov/gene/?term=YE2788
YE2789	YE2789		YE2789	3029582	3030802	+	multidrug resistance protein		gene	gene2728	http://www.ncbi.nlm.nih.gov/gene/?term=YE2789
YE2790	YE2790	yohJ	yohJ	3030901	3031308	+	hypothetical protein		gene	gene2729	http://www.ncbi.nlm.nih.gov/gene/?term=YE2790
YE2791	YE2791	yohK	yohK	3031305	3032000	+	hypothetical protein		gene	gene2730	http://www.ncbi.nlm.nih.gov/gene/?term=YE2791
YE2792	YE2792	cdd	cdd	3032139	3033023	+	cytidine deaminase	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis	gene	gene2731	http://www.ncbi.nlm.nih.gov/gene/?term=YE2792
YE2793	YE2793		YE2793	3033097	3033444	-	lipoprotein		gene	gene2732	http://www.ncbi.nlm.nih.gov/gene/?term=YE2793
YE2794	YE2794	maeA	maeA	3033911	3035608	+	malate dehydrogenase	malic enzyme%3B oxaloacetate-decarboxylating%3B NAD-dependent%3B catalyzes the formation of pyruvate form malate	gene	gene2733	http://www.ncbi.nlm.nih.gov/gene/?term=YE2794
YE2795	YE2795	sanA	sanA	3035775	3036578	+	hypothetical protein		gene	gene2734	http://www.ncbi.nlm.nih.gov/gene/?term=YE2795
YE2796	YE2796	hypC	hypC	3036629	3036907	-	hydrogenase isoenzymes formation protein	Similar to Escherichia coli hydrogenase isoenzymes formation protein HypC SWALL:HYPC_ECOLI (SWALL:P24191) (90 aa) fasta scores: E(): 8.2e-15%2C 52.17 38d in 92 aa%2C and to Proteus vulgaris frd operon hypothetical protein C SWALL:YFRC_PROVU (SWALL:P20927) (96 aa) fasta scores: E(): 4e-16%2C 58.69 38d in 92 aa	gene	gene2735	http://www.ncbi.nlm.nih.gov/gene/?term=YE2796
YE2797	YE2797	hypA	hypA	3036948	3037295	-	hydrogenase nickel incorporation protein	plays a role in hydrogenase nickel cofactor insertion	gene	gene2736	http://www.ncbi.nlm.nih.gov/gene/?term=YE2797
YE2798	YE2798	hyfA	hyfA	3037703	3038344	+	hydrogenase-4 subunit A	Similar to Escherichia coli formate hydrogenlyase subunit 2 HycB or HevB SWALL:HYCB_ECOLI (SWALL:P16428) (203 aa) fasta scores: E(): 3.2e-40%2C 53.84 38d in 208 aa%2Cand to Similar to Escherichia coli hydrogenase-4 component A HyfA SWALL:HYFA_ECOLI (SWALL:P23481) (205 aa) fasta scores: E(): 2e-38%2C 50.25 38d in 193 aa	gene	gene2737	http://www.ncbi.nlm.nih.gov/gene/?term=YE2798
YE2799	YE2799	hyfB	hyfB	3038341	3040368	+	hydrogenase 4 subunit B	Similar to Escherichia coli hydrogenase-4 component B HyfB SWALL:HYFB_ECOLI (SWALL:P23482) (672 aa) fasta scores: E(): 1.5e-144%2C 57.84 38d in 676 aa%2C and to Escherichia coli formate hydrogenlyase subunit 3 HycC or HevC SWALL:HYCC_ECOLI (SWALL:P16429) (608 aa) fasta scores: E(): 1.7e-62%2C 38.58 38d in 609 aa	gene	gene2738	http://www.ncbi.nlm.nih.gov/gene/?term=YE2799
YE2800	YE2800	hyfC	hyfC	3040380	3041333	+	hydrogenase-4 subunit C	Similar to Escherichia coli formate hydrogenlyase subunit 4 HycD or HevD SWALL:HYCD_ECOLI (SWALL:P16430) (307 aa) fasta scores: E(): 7.6e-63%2C 57.37 38d in 305 aa%2Cand to Escherichia coli hydrogenase-4 component C HyfC SWALL:HYFC_ECOLI (SWALL:P77858) (315 aa) fasta scores: E(): 1.3e-75%2C 67.1 38d in 307 aa	gene	gene2739	http://www.ncbi.nlm.nih.gov/gene/?term=YE2800
YE2801	YE2801	hyfD	hyfD	3041352	3042821	+	hydrogenase 4 subunit D	Similar to Escherichia coli hydrogenase-4 component D HyfD SWALL:HYFD_ECOLI (SWALL:P77416) (479 aa) fasta scores: E(): 1.7e-128%2C 69.39 38d in 477 aa%2C and to Thermoanaerobacter tengcongensis NADH:ubiquinone oxidoreductase subunit 5 TTE1701 SWALL:AAM24902 (EMBL:AE013124) (479 aa) fasta scores: E(): 3.4e-99%2C56.66 38d in 480 aa. CDS is extended at the N-terminus in comparison to orthologues	gene	gene2740	http://www.ncbi.nlm.nih.gov/gene/?term=YE2801
YE2802	YE2802	hyfE	hyfE	3042833	3043498	+	hydrogenase 4 membrane subunit	interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide	gene	gene2741	http://www.ncbi.nlm.nih.gov/gene/?term=YE2802
YE2803	YE2803	hyfF	hyfF	3043503	3045140	+	hydrogenase 4 subunit F	Similar to Escherichia coli hydrogenase-4 component F HyfF SWALL:HYFF_ECOLI (SWALL:P77437) (526 aa) fasta scores: E(): 4.3e-129%2C 67.49 38d in 523 aa%2C and to Thermoanaerobacter tengcongensis formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter%2C MnhD subunit TTE1702 SWALL:AAM24903 (EMBL:AE013124) (494 aa) fasta scores: E(): 1.3e-94%2C 52.12 38d in 495 aa. CDS is extended at the C-terminus in comparsion to the T. tengcongensis protein	gene	gene2742	http://www.ncbi.nlm.nih.gov/gene/?term=YE2803
YE2804	YE2804	hyfG	hyfG	3045142	3046947	+	hydrogenase-4 subunit G	Similar to Escherichia coli hydrogenase-4 component G HyfG SWALL:HYFG_ECOLI (SWALL:P77329) (555 aa) fasta scores: E(): 1.1e-100%2C 72.58 38d in 580 aa%2C and to Escherichia coli formate hydrogenlyase subunit 5 precursor HycE or HevE SWALL:HYCE_ECOLI (SWALL:P16431) (569 aa) fasta scores: E(): 2.8e-158%2C 72.41 38d in 580 aa	gene	gene2743	http://www.ncbi.nlm.nih.gov/gene/?term=YE2804
YE2805	YE2805	hyfH	hyfH	3046959	3047546	+	hydrogenase 4 subunit H	probable electron transfer protein for hydrogenase 4%3B hydrogenase 4 is believed to be silent in E. coli under conditions tested so far	gene	gene2744	http://www.ncbi.nlm.nih.gov/gene/?term=YE2805
YE2806	YE2806	hyfI	hyfI	3047543	3048349	+	hydrogenase-4 subunit I	Similar to Escherichia coli formate hydrogenlyase subunit 7 HycG or HevG SWALL:HYCG_ECOLI (SWALL:P16433) (255 aa) fasta scores: E(): 4.7e-63%2C 64.25 38d in 249 aa%2Cand to Escherichia coli hydrogenase-4 component I HyfI SWALL:HYFI_ECOLI (SWALL:P77668) (252 aa) fasta scores: E(): 6.3e-63%2C 64.65 38d in 249 aa	gene	gene2745	http://www.ncbi.nlm.nih.gov/gene/?term=YE2806
YE2807	YE2807	hyfJ	hyfJ	3048342	3048743	+	hydrogenase-4 subunit J	Similar to Escherichia coli formate hydrogenlyase maturation protein HycH or HevH SWALL:HYCH_ECOLI (SWALL:P16434) (136 aa) fasta scores: E(): 3e-24%2C 54.61 id in 130 aa%2C and to Escherichia coli hydrogenase-4 component J HyfJ SWALL:HYFJ_ECOLI (SWALL:P77453) (137 aa) fasta scores: E(): 4.7e-27%2C 55.81 38d in 129 aa	gene	gene2746	http://www.ncbi.nlm.nih.gov/gene/?term=YE2807
YE2808	YE2808	hycI	hycI	3048740	3049213	+	hydrogenase 3 maturation protease	involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE	gene	gene2747	http://www.ncbi.nlm.nih.gov/gene/?term=YE2808
YE2809	YE2809	hydN	hydN	3049640	3050182	+	4Fe-4S ferredoxin		gene	gene2748	http://www.ncbi.nlm.nih.gov/gene/?term=YE2809
YE2810	YE2810	fdhF	fdhF	3050211	3052358	+	formate dehydrogenase H		gene	gene2749	http://www.ncbi.nlm.nih.gov/gene/?term=YE2810
YE2811	YE2811	hyfR	hyfR	3052602	3054761	-	hydrogenlyase transcriptional activator	Similar to Escherichia coli formate hydrogenlyase transcriptional activator FhlA SWALL:FHLA_ECOLI (SWALL:P19323) (692 aa) fasta scores: E(): 1.2e-111%2C51.57 38d in 698 aa%2C and to Enterobacter aerogenes formate hydrogenlyase activator protein FhlA SWALL:Q9L6V0 (EMBL:AF232732) (690 aa) fasta scores: E(): 1.3e-115%2C52.79 38d in 699 aa	gene	gene2750	http://www.ncbi.nlm.nih.gov/gene/?term=YE2811
YE2812	YE2812	focB	focB	3055206	3056060	+	formate transporter	Similar to Escherichia coli probable formate transporter 1 FocA SWALL:FOCA_ECOLI (SWALL:P21501) (285 aa) fasta scores: E(): 2.8e-86%2C 75.35 38d in 284 aa%2C and to Yersinia pestis putative formate transporter 1 YPO1384 SWALL:Q8ZGB9 (EMBL:AJ414148) (285 aa) fasta scores: E(): 2.6e-90%2C 80.35 38d in 280 aa	gene	gene2751	http://www.ncbi.nlm.nih.gov/gene/?term=YE2812
YE2813	YE2813	mglC	mglC	3056171	3057181	-	beta-methylgalactoside transporter inner membrane protein	ABC transporter%3B functions in galactose transport%3B part of MglA2C2B transporter complex	gene	gene2752	http://www.ncbi.nlm.nih.gov/gene/?term=YE2813
YE2814	YE2814	mglA	mglA	3057202	3058722	-	galactose/methyl galaxtoside transporter ATP-binding protein	with MglBC transports galactose or methyl galactoside into the cell%3B contains 2 ATP binding domains	gene	gene2753	http://www.ncbi.nlm.nih.gov/gene/?term=YE2814
YE2815	YE2815	mglB	mglB	3058918	3059910	-	galactose-binding protein		gene	gene2754	http://www.ncbi.nlm.nih.gov/gene/?term=YE2815
YE2816	YE2816	galS	galS	3060265	3061302	-	DNA-binding transcriptional regulator GalS	negative regulator of the mglBAC operon for galactose utilization	gene	gene2755	http://www.ncbi.nlm.nih.gov/gene/?term=YE2816
YE2817	YE2817	yeiB	yeiB	3061484	3062650	-	hypothetical protein		gene	gene2756	http://www.ncbi.nlm.nih.gov/gene/?term=YE2817
YE2818	YE2818	folE	folE	3062705	3063367	-	GTP cyclohydrolase I	involved in the first step of tetrahydrofolate biosynthesis%3B catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1%2C2%2C3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water%3B forms a homopolymer	gene	gene2757	http://www.ncbi.nlm.nih.gov/gene/?term=YE2818
YE2819	YE2819		YE2819	3063522	3064694	-	hypothetical protein		gene	gene2758	http://www.ncbi.nlm.nih.gov/gene/?term=YE2819
YE2820	YE2820		YE2820	3064831	3065700	+	LysR family transcriptional regulator		gene	gene2759	http://www.ncbi.nlm.nih.gov/gene/?term=YE2820
YE2821	YE2821		YE2821	3065971	3067119	+	alcohol dehydrogenase		gene	gene2760	http://www.ncbi.nlm.nih.gov/gene/?term=YE2821
YE2822	YE2822		YE2822	3067140	3067982	+	esterase		gene	gene2761	http://www.ncbi.nlm.nih.gov/gene/?term=YE2822
YE2822a	YE2822a		YE2822a	3068421	3068621	+	hypothetical protein		gene	gene2762	http://www.ncbi.nlm.nih.gov/gene/?term=YE2822a
YE2823	YE2823		YE2823	3068765	3071137	+	hypothetical protein		gene	gene2763	http://www.ncbi.nlm.nih.gov/gene/?term=YE2823
YE2824	YE2824		YE2824	3071142	3072404	+	hypothetical protein		gene	gene2764	http://www.ncbi.nlm.nih.gov/gene/?term=YE2824
YE2825	YE2825		YE2825	3072406	3073065	+	ABC transporter ATP-binding protein		gene	gene2765	http://www.ncbi.nlm.nih.gov/gene/?term=YE2825
YE2826	YE2826		YE2826	3073083	3074393	+	heme-binding protein		gene	gene2766	http://www.ncbi.nlm.nih.gov/gene/?term=YE2826
YE2827	YE2827		YE2827	3074501	3075040	-	hypothetical protein	Similar to Ralstonia solanacearum putative transmembrane protein RSC2089 or RS03654 SWALL:Q8XXM4 (EMBL:AL646068) (192 aa) fasta scores: E(): 5.3e-22%2C39.89 38d in 183 aa%2C and to the C-terminal region of Rhizobium meliloti hypothetical protein R02007 or SMC04178 SWALL:Q92NZ4 (EMBL:AL591789) (239 aa) fasta scores: E(): 1.7e-25%2C 39.77 38d in 176 aa	gene	gene2767	http://www.ncbi.nlm.nih.gov/gene/?term=YE2827
YE2828	YE2828	bisB	bisB	3075244	3076479	+	molybdopterin biosynthesis protein MoeA	is involved in the formation of active molybdenum cofactor and the chelation of molybdenum	gene	gene2768	http://www.ncbi.nlm.nih.gov/gene/?term=YE2828
YE2829	YE2829	chlN	chlN	3076519	3077304	+	molybdopterin biosynthesis protein MoeB	ATP-dependent adenylate transferase%2C transfers adenyl moiety to the MoeD subunit of molybdopterin synthase	gene	gene2769	http://www.ncbi.nlm.nih.gov/gene/?term=YE2829
YE2830	YE2830		YE2830	3077686	3080112	+	hypothetical protein		gene	gene2770	http://www.ncbi.nlm.nih.gov/gene/?term=YE2830
YE2831	YE2831	ybiT	ybiT	3080223	3081818	-	ABC transporter ATP-binding protein		gene	gene2771	http://www.ncbi.nlm.nih.gov/gene/?term=YE2831
YE2832	YE2832		YE2832	3081998	3083407	-	hypothetical protein	No significant database matches to the full length CDS. N-terminal region is similar to Lactococcus lactis unknown protein LL1298 SWALL:Q9CG12 (EMBL:AE006362) (118 aa) fasta scores: E(): 1.8e-14%2C 45.37 38d in 108 aa%2C and the C-terminal region is similar to Lactococcus lactis unknown protein LL1299 SWALL:Q9CG11 (EMBL:AE006362) (317 aa) fasta scores: E(): 1.1e-72%2C 57.91 38d in 316 aa	gene	gene2772	http://www.ncbi.nlm.nih.gov/gene/?term=YE2832
YE2833	YE2833		YE2833	3083465	3084403	-	hypothetical protein		gene	gene2773	http://www.ncbi.nlm.nih.gov/gene/?term=YE2833
YE2834	YE2834		YE2834	3084900	3085592	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein PA2764 SWALL:Q9I079 (EMBL:AE004704) (231 aa) fasta scores: E(): 4.4e-38%2C 49.1 38d in 224 aa%2C and to Rhizobium loti hypothetical protein MLL2018 mll2018 SWALL:Q98JB5 (EMBL:AP002998) (233 aa) fasta scores: E(): 1.5e-31%2C43.36 38d in 226 aa	gene	gene2774	http://www.ncbi.nlm.nih.gov/gene/?term=YE2834
YE2835	YE2835	ompX	ompX	3085714	3086241	-	outer membrane protein X	OmpX%3B involved in cell adhesion%3B forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface%3B mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains	gene	gene2775	http://www.ncbi.nlm.nih.gov/gene/?term=YE2835
YE2836	YE2836		YE2836	3086365	3086589	-	hypothetical protein	Poor database matches. Similar to the C-terminal region of Bacillus halodurans hypothetical protein BH0515 SWALL:Q9KFG4 (EMBL:AP001508) (105 aa) fasta scores: E(): 9.2%2C 31.88 38d in 69 aa	gene	gene2776	http://www.ncbi.nlm.nih.gov/gene/?term=YE2836
YE2837	YE2837		YE2837	3086644	3087531	+	threonine and homoserine efflux system		gene	gene2777	http://www.ncbi.nlm.nih.gov/gene/?term=YE2837
YE2838	YE2838		YE2838	3087545	3088036	+	hypothetical protein		gene	gene2778	http://www.ncbi.nlm.nih.gov/gene/?term=YE2838
YE2839	YE2839		YE2839	3088214	3088774	+	hypothetical protein	Similar to Rhizobium loti hypothetical protein MLR4813 SWALL:Q98D87 (EMBL:AP003005) (186 aa) fasta scores: E(): 6.6e-30%2C 56.66 38d in 180 aa%2C and to the C-terminal region of Agrobacterium tumefaciens hypothetical protein ATU0472 or AGR_C_835 SWALL:Q8UI28 (EMBL:AE009017) (217 aa) fasta scores: E(): 1.8e-30%2C56.45 38d in 186 aa	gene	gene2779	http://www.ncbi.nlm.nih.gov/gene/?term=YE2839
YE2840	YE2840		YE2840	3088834	3089388	+	RNA polymerase sigma factor	Similar to Pseudomonas aeruginosa RNA polymerase sigma-H factor AlgU or AlgT SWALL:RPSH_PSEAE (SWALL:Q06198) (193 aa) fasta scores: E(): 2.5e-06%2C 25.14 id in 175 aa%2C and to Streptomyces coelicolor putative RNA polymerase sigma factor SCO1723 or SCI11.12c SWALL:Q9S2A7 (EMBL:AL096849) (185 aa) fasta scores: E(): 7.5e-16%2C32.36 38d in 173 aa	gene	gene2780	http://www.ncbi.nlm.nih.gov/gene/?term=YE2840
YE2841	YE2841		YE2841	3089385	3090050	+	hypothetical protein	Similar to Rhizobium loti hypothetical protein MLL4823 SWALL:Q98D79 (EMBL:AP003005) (244 aa) fasta scores: E(): 5.7e-07%2C 30.7 38d in 228 aa%2C and to Rhizobium meliloti hypothetical transmembrane protein R00440 or SMC01725 SWALL:Q92SF9 (EMBL:AL591783) (237 aa) fasta scores: E(): 4.5e-05%2C 30.45 38d in 220 aa	gene	gene2781	http://www.ncbi.nlm.nih.gov/gene/?term=YE2841
YE2842	YE2842	tam	tam	3090075	3090851	+	trans-aconitate 2-methyltransferase	catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate	gene	gene2782	http://www.ncbi.nlm.nih.gov/gene/?term=YE2842
YE2843	YE2843	dps	dps	3091166	3091675	+	DNA starvation/stationary phase protection protein Dps	binds DNA in a non-sequence-specific manner and is abundant during stationary phase%3B forms a DNA-protein crystal that protects DNA from damage%3B required for normal starvation response and long-term stationary viability%3B forms a homododecameric complex and sequesters iron which provides protection against oxidative damage	gene	gene2783	http://www.ncbi.nlm.nih.gov/gene/?term=YE2843
YE2844	YE2844		YE2844	3091792	3092058	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein PA4870 SWALL:Q9HUU3 (EMBL:AE004900) (88 aa) fasta scores: E(): 9.8e-22%2C 65.9 38d in 88 aa%2C and to Salmonella typhimurium putative DnaK suppressor protein STM0825 SWALL:Q8ZQN5 (EMBL:AE008734) (88 aa) fasta scores: E(): 1.8e-19%2C 62.5 38d in 88 aa	gene	gene2784	http://www.ncbi.nlm.nih.gov/gene/?term=YE2844
YE2845	YE2845	glnH	glnH	3092445	3093188	+	glutamine ABC transporter substrate-binding protein	similar to periplasmic-binding component of ABC transporters	gene	gene2785	http://www.ncbi.nlm.nih.gov/gene/?term=YE2845
YE2846	YE2846	glnP	glnP	3093255	3093911	+	glutamine ABC transporter permease	similar to permease component of ABC transporters%3B mutations impair ability of Escherichia coli to transport and utilize glutamine	gene	gene2786	http://www.ncbi.nlm.nih.gov/gene/?term=YE2846
YE2847	YE2847	glnQ	glnQ	3093908	3094630	+	glutamine ABC transporter ATP-binding protein	similar to ATP-binding component of ABC transporters	gene	gene2787	http://www.ncbi.nlm.nih.gov/gene/?term=YE2847
YE2848	YE2848		YE2848	3094913	3096145	-	chemotactic transducer		gene	gene2788	http://www.ncbi.nlm.nih.gov/gene/?term=YE2848
YE2849	YE2849		YE2849	3096772	3097779	-	SAM-dependent methyltransferase		gene	gene2789	http://www.ncbi.nlm.nih.gov/gene/?term=YE2849
YE2850	YE2850		YE2850	3097906	3098547	+	hypothetical protein	Similar to Ralstonia solanacearum hypothetical protein RSC1820 or RS04248 SWALL:Q8XYD8 (EMBL:AL646066) (207 aa) fasta scores: E(): 1.6e-42%2C 53.62 38d in 207 aa%2Cand to Agrobacterium tumefaciens hypothetical protein ATU1743 or AGR_C_3198 SWALL:Q8UEL4 (EMBL:AE009130) (205 aa) fasta scores: E(): 1.7e-31%2C 47.26 38d in 201 aa	gene	gene2790	http://www.ncbi.nlm.nih.gov/gene/?term=YE2850
YE2851	YE2851		YE2851	3098674	3098934	+	hypothetical protein		gene	gene2791	http://www.ncbi.nlm.nih.gov/gene/?term=YE2851
YE2852	YE2852		YE2852	3099086	3100948	-	peptidase	Similar to Vibrio cholerae putative peptidase VC1983 SWALL:Q9KQL5 (EMBL:AE004273) (615 aa) fasta scores: E(): 2.9e-129%2C 52.95 38d in 610 aa. Internal region is similar to the C-terminal region of Escherichia coli peptidyl-dipeptidase Dcp SWALL:DCP_ECOLI (SWALL:P24171) (680 aa) fasta scores: E(): 0.072%2C 23.52 38d in 425 aa	gene	gene2792	http://www.ncbi.nlm.nih.gov/gene/?term=YE2852
YE2853	YE2853	ybiB	ybiB	3101167	3102147	-	glycosyl transferase family protein		gene	gene2793	http://www.ncbi.nlm.nih.gov/gene/?term=YE2853
YE2854	YE2854	aqpZ	aqpZ	3102357	3103061	-	aquaporin Z	Similar to Escherichia coli aquaporin Z AqpZ or BniP SWALL:AQPZ_ECOLI (SWALL:P48838) (231 aa) fasta scores: E(): 6.9e-55%2C 68.44 38d in 225 aa%2C and to Pseudomonas aeruginosa aquaporin Z PA4034 SWALL:Q9HWZ3 (EMBL:AE004820) (229 aa) fasta scores: E(): 3.5e-56%2C70.08 38d in 224 aa	gene	gene2794	http://www.ncbi.nlm.nih.gov/gene/?term=YE2854
YE2855	YE2855	dinG	dinG	3103372	3105555	-	ATP-dependent DNA helicase DinG	helicase involved in DNA repair and perhaps also replication	gene	gene2795	http://www.ncbi.nlm.nih.gov/gene/?term=YE2855
YE2856	YE2856	ompC2	ompC2	3105995	3107110	+	outer membrane protein C2		gene	gene2796	http://www.ncbi.nlm.nih.gov/gene/?term=YE2856
YE2857	YE2857		YE2857	3107234	3108544	-	hypothetical protein	Similar to Yersinia pestis putative exported protein YPO3473 SWALL:Q8ZBE3 (EMBL:AJ414157) (408 aa) fasta scores: E(): 2.5e-43%2C 33.67 38d in 392 aa. C-terminal region is similar to Yersinia pestis hypothetical protein YPO3468 SWALL:Q8ZBE8 (EMBL:AJ414157) (388 aa) fasta scores: E(): 1.2e-44%2C 36.03 38d in 358 aa	gene	gene2797	http://www.ncbi.nlm.nih.gov/gene/?term=YE2857
YE2858	YE2858		YE2858	3108825	3109715	+	hypothetical protein		gene	gene2798	http://www.ncbi.nlm.nih.gov/gene/?term=YE2858
YE2858a	YE2858a		YE2858a	3109785	3109985	+	hypothetical protein		gene	gene2799	http://www.ncbi.nlm.nih.gov/gene/?term=YE2858a
YE2859	YE2859		YE2859	3109970	3110884	-	LysR family transcriptional regulator	Similar to Pseudomonas aeruginosa probable transcriptional regulator PA3565 SWALL:Q9HY52 (EMBL:AE004777) (306 aa) fasta scores: E(): 7.8e-59%2C52.72 38d in 294 aa%2C and to Vibrio cholerae LysR family transcriptional regulator VCA0635 SWALL:Q9KLV6 (EMBL:AE004393) (313 aa) fasta scores: E(): 3.5e-42%2C40.74 38d in 297 aa	gene	gene2800	http://www.ncbi.nlm.nih.gov/gene/?term=YE2859
YE2860	YE2860		YE2860	3110994	3111740	+	short chain dehydrogenase	Similar to Rhizobium loti probable acyl-carrier protein reductase MLR2047 SWALL:Q98J89 (EMBL:AP002998) (242 aa) fasta scores: E(): 7.9e-23%2C 38.81 38d in 237 aa%2Cand to Rhizobium leguminosarum putative short-chain dehydrogenase SWALL:Q93E09 (EMBL:AF372655) (245 aa) fasta scores: E(): 5.3e-20%2C 36.05 38d in 233 aa	gene	gene2801	http://www.ncbi.nlm.nih.gov/gene/?term=YE2860
YE2861	YE2861		YE2861	3111996	3112799	-	hypothetical protein	Poor database matches. C-terminus is similar to the C-terminal region of Pseudomonas aeruginosa hypothetical protein PA101 SWALL:Q9HU82 (EMBL:AE004923) (265 aa) fasta scores: E(): 9.9e-23%2C 35.45 38d in 220 aa. N-terminus is similar to the C-terminal region of Rhizobium loti hypothetical protein MLL1215 SWALL:Q98L21 (EMBL:AP002996) (275 aa) fasta scores: E(): 2.3e-07%2C 35 38d in 240 aa	gene	gene2802	http://www.ncbi.nlm.nih.gov/gene/?term=YE2861
YE2862	YE2862		YE2862	3112831	3113559	-	ABC transport integral membrane subunit		gene	gene2803	http://www.ncbi.nlm.nih.gov/gene/?term=YE2862
YE2863	YE2863		YE2863	3113658	3114602	-	ABC transport ATP-binding subunit		gene	gene2804	http://www.ncbi.nlm.nih.gov/gene/?term=YE2863
YE2864	YE2864		YE2864	3114599	3115753	-	ABC transport integral membrane subunit		gene	gene2805	http://www.ncbi.nlm.nih.gov/gene/?term=YE2864
YE2865	YE2865		YE2865	3115862	3116794	-	substrate-binding transport protein		gene	gene2806	http://www.ncbi.nlm.nih.gov/gene/?term=YE2865
YE2866	YE2866		YE2866	3117162	3118220	-	fatty acid desaturase	Similar to Pseudomonas aeruginosa hypothetical protein PA5102 SWALL:Q9HU81 (EMBL:AE004923) (312 aa) fasta scores: E(): 1e-50%2C 44.9 38d in 314 aa%2C and to Rhizobium loti hypothetical protein MLL1216 mll1216 SWALL:Q98L20 (EMBL:AP002996) (340 aa) fasta scores: E(): 8.6e-30%2C32.48 38d in 314 aa	gene	gene2807	http://www.ncbi.nlm.nih.gov/gene/?term=YE2866
YE2867	YE2867		YE2867	3118377	3119507	-	hypothetical protein		gene	gene2808	http://www.ncbi.nlm.nih.gov/gene/?term=YE2867
YE2868	YE2868		YE2868	3119899	3120753	+	sulfurtransferase		gene	gene2809	http://www.ncbi.nlm.nih.gov/gene/?term=YE2868
YE2869	YE2869		YE2869	3120760	3121458	-	ABC transport ATP-binding subunit		gene	gene2810	http://www.ncbi.nlm.nih.gov/gene/?term=YE2869
YE2870	YE2870		YE2870	3121586	3122422	-	ABC transport ATP-binding subunit		gene	gene2811	http://www.ncbi.nlm.nih.gov/gene/?term=YE2870
YE2871	YE2871		YE2871	3122419	3123495	-	branched chain amino acid ABC transporter permease		gene	gene2812	http://www.ncbi.nlm.nih.gov/gene/?term=YE2871
YE2872	YE2872		YE2872	3123495	3125096	-	branched chain amino acid ABC transporter permease		gene	gene2813	http://www.ncbi.nlm.nih.gov/gene/?term=YE2872
YE2873	YE2873		YE2873	3125172	3126440	-	substrate-binding transport protein		gene	gene2814	http://www.ncbi.nlm.nih.gov/gene/?term=YE2873
YE2874	YE2874		YE2874	3126784	3127254	-	hypothetical protein		gene	gene2815	http://www.ncbi.nlm.nih.gov/gene/?term=YE2874
YE2875	YE2875		YE2875	3127508	3128413	-	ABC transport permease		gene	gene2816	http://www.ncbi.nlm.nih.gov/gene/?term=YE2875
YE2876	YE2876		YE2876	3128413	3129216	-	ABC transport permease		gene	gene2817	http://www.ncbi.nlm.nih.gov/gene/?term=YE2876
YE2877	YE2877		YE2877	3129345	3130274	-	substrate-binding transport protein		gene	gene2818	http://www.ncbi.nlm.nih.gov/gene/?term=YE2877
YE2878	YE2878		YE2878	3130311	3131147	-	ABC transport ATP-binding subunit		gene	gene2819	http://www.ncbi.nlm.nih.gov/gene/?term=YE2878
YE2879	YE2879		YE2879	3131344	3131619	-	hypothetical protein		gene	gene2820	http://www.ncbi.nlm.nih.gov/gene/?term=YE2879
YE2880	YE2880		YE2880	3131747	3132850	-	hypothetical protein		gene	gene2821	http://www.ncbi.nlm.nih.gov/gene/?term=YE2880
YE2881	YE2881		YE2881	3133227	3133568	+	hypothetical protein		gene	gene2822	http://www.ncbi.nlm.nih.gov/gene/?term=YE2881
YE2882	YE2882	cyaB	cyaB	3133632	3134171	-	adenylate cyclase 2		gene	gene2823	http://www.ncbi.nlm.nih.gov/gene/?term=YE2882
YE2883	YE2883	dld	dld	3134372	3136084	+	D-lactate dehydrogenase	component of the membrane-bound D-lactate oxidase%2C FAD-binding%2C NADH independent	gene	gene2824	http://www.ncbi.nlm.nih.gov/gene/?term=YE2883
YE2884	YE2884	pbpG	pbpG	3136432	3137367	-	D-alanyl-D-alanine endopeptidase	specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi%3B Penicillin-binding protein 7	gene	gene2825	http://www.ncbi.nlm.nih.gov/gene/?term=YE2884
YE2884a	YE2884a		YE2884a	3137597	3137773	+	membrane protein		gene	gene2826	http://www.ncbi.nlm.nih.gov/gene/?term=YE2884a
YE2885	YE2885		YE2885	3137850	3138482	+	hypothetical protein	Poor database matches. Similar to Salmonella typhi hypothetical protein O211 SWALL:Q93RR8 (EMBL:AJ313032) (211 aa) fasta scores: E(): 3.4e-45%2C 57.07 38d in 205 aa	gene	gene2827	http://www.ncbi.nlm.nih.gov/gene/?term=YE2885
YE2886	YE2886		YE2886	3138551	3139489	-	tRNA-dihydrouridine synthase C		gene	gene2828	http://www.ncbi.nlm.nih.gov/gene/?term=YE2886
YE2888	YE2888		YE2888	3139640	3140426	-			gene	gene2829	http://www.ncbi.nlm.nih.gov/gene/?term=YE2888
YE2889	YE2889	rhlE	rhlE	3140549	3141904	-	ATP-dependent RNA helicase RhlE	this helicase is not essential cell growth	gene	gene2830	http://www.ncbi.nlm.nih.gov/gene/?term=YE2889
YE2890	YE2890		YE2890	3142308	3143015	+	DNA-binding transcriptional regulator	Similar to Pseudomonas putida regulatory protein PsrA SWALL:Q9EX90 (EMBL:AJ293485) (237 aa) fasta scores: E(): 0.00049%2C 26.51 38d in 215 aa%2C and to Yersinia pestis putative transcription regulator YbiH SWALL:Q93AA6 (EMBL:AF426171) (236 aa) fasta scores: E(): 6.2e-71%2C82.47 38d in 234 aa	gene	gene2831	http://www.ncbi.nlm.nih.gov/gene/?term=YE2890
YE2891	YE2891		YE2891	3143202	3144188	+	hypothetical protein	Similar to Yersinia pestis hypothetical membrane protein ECS0873 SWALL:Y873_YERPE (SWALL:Q93AA7) (328 aa) fasta scores: E(): 6.9e-103%2C 90.82 38d in 327 aa%2C and to Salmonella typhi hypothetical membrane protein STY0853 SWALL:YBHG_SALTI (SWALL:Q8Z879) (331 aa) fasta scores: E(): 1.1e-74%2C 65.94 38d in 323 aa	gene	gene2832	http://www.ncbi.nlm.nih.gov/gene/?term=YE2891
YE2892	YE2892		YE2892	3144202	3145953	+	ABC transporter ATP-binding protein	Similar to Yersinia pestis putative ABC transporter ElsE SWALL:Q93AA8 (EMBL:AF426171) (580 aa) fasta scores: E(): 1.2e-180%2C 91.55 38d in 580 aa%2C and to Escherichia coli hypothetical ABC transporter ATP-binding protein YbhF SWALL:YBHF_ECOLI (SWALL:P75776) (578 aa) fasta scores: E(): 5.9e-146%2C 75.08 38d in 574 aa	gene	gene2833	http://www.ncbi.nlm.nih.gov/gene/?term=YE2892
YE2893	YE2893		YE2893	3145950	3147140	+	hypothetical protein	Similar to Yersinia pestis hypothetical protein ElsD SWALL:Q93AA9 (EMBL:AF426171) (419 aa) fasta scores: E(): 4.8e-129%2C 91.21 38d in 387 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi putative ABC superfamily STM0816 or STY0851 SWALL:Q8XGS9 (EMBL:AE008733) (376 aa) fasta scores: E(): 3.3e-107%2C 79.3 38d in 372 aa. CDS is extended at the N-terminus in comparison to the S. typhi protein and truncated in comparison to the Y. pestis protein. Possible alternative translational start site	gene	gene2834	http://www.ncbi.nlm.nih.gov/gene/?term=YE2893
YE2894	YE2894		YE2894	3147174	3148280	+	hypothetical protein	Similar to Yersinia pestis hypothetical protein YbhR SWALL:Q93AB1 (EMBL:AF426171) (368 aa) fasta scores: E(): 2.7e-128%2C 96.46 38d in 368 aa%2C and to Escherichia coli hypothetical protein YbhR SWALL:YBHR_ECOLI (SWALL:P75774) (368 aa) fasta scores: E(): 4.1e-114%2C85.28 38d in 367 aa	gene	gene2835	http://www.ncbi.nlm.nih.gov/gene/?term=YE2894
YE2895	YE2895		YE2895	3148597	3149307	-	hypothetical protein		gene	gene2836	http://www.ncbi.nlm.nih.gov/gene/?term=YE2895
YE2896	YE2896	moaE	moaE	3149451	3149906	-	molybdopterin guanine dinucleotide biosynthesis protein MoaE	catalyzes the conversion of molybdopterin precursor Z into molybdopterin	gene	gene2837	http://www.ncbi.nlm.nih.gov/gene/?term=YE2896
YE2897	YE2897	moaD	moaD	3149906	3150151	-	molybdopterin synthase small subunit	catalyzes the conversion of molybdopterin precursor Z into molybdopterin	gene	gene2838	http://www.ncbi.nlm.nih.gov/gene/?term=YE2897
YE2898	YE2898	moaC	moaC	3150148	3150627	-	molybdenum cofactor biosynthesis protein MoaC	MoaC%3B along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z%3B involved in molybdenum cofactor biosynthesis	gene	gene2839	http://www.ncbi.nlm.nih.gov/gene/?term=YE2898
YE2899	YE2899	moaA	moaA	3150659	3151639	-	molybdenum cofactor biosynthesis protein A	together with moaC%2C is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z	gene	gene2840	http://www.ncbi.nlm.nih.gov/gene/?term=YE2899
YE2900	YE2900		YE2900	3152092	3153015	+	hypothetical protein		gene	gene2841	http://www.ncbi.nlm.nih.gov/gene/?term=YE2900
YE2901	YE2901		YE2901	3153030	3153278	-	hypothetical protein		gene	gene2842	http://www.ncbi.nlm.nih.gov/gene/?term=YE2901
YE2902	YE2902	uvrB	uvrB	3153347	3155359	-	excinuclease ABC subunit B	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands%2C where it probes for the presence of a lesion	gene	gene2843	http://www.ncbi.nlm.nih.gov/gene/?term=YE2902
YE2903	YE2903		YE2903	3156324	3157031	+	amino acid transporter		gene	gene2844	http://www.ncbi.nlm.nih.gov/gene/?term=YE2903
YE2904	YE2904	bioD	bioD	3157143	3157790	-	dithiobiotin synthetase	DTB synthetase%3B dethiobiotin synthase%3B involved in production of dethiobiotin from ATP and 7%2C8-diaminononanoate and carbon dioxide%3B contains magnesium	gene	gene2845	http://www.ncbi.nlm.nih.gov/gene/?term=YE2904
YE2905	YE2905	bioC	bioC	3157849	3158595	-	biotin synthesis protein BioC		gene	gene2846	http://www.ncbi.nlm.nih.gov/gene/?term=YE2905
YE2906	YE2906	bioF	bioF	3158645	3159796	-	8-amino-7-oxononanoate synthase	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine	gene	gene2847	http://www.ncbi.nlm.nih.gov/gene/?term=YE2906
YE2907	YE2907	bioB	bioB	3159796	3160848	-	biotin synthase		gene	gene2848	http://www.ncbi.nlm.nih.gov/gene/?term=YE2907
YE2908	YE2908	bioA	bioA	3160948	3162225	+	adenosylmethionine-8-amino-7-oxononanoate aminotransferase	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7%2C8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate	gene	gene2849	http://www.ncbi.nlm.nih.gov/gene/?term=YE2908
YE2909	YE2909		YE2909	3162343	3163344	-	6-phosphogluconolactonase	catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate	gene	gene2850	http://www.ncbi.nlm.nih.gov/gene/?term=YE2909
YE2910	YE2910		YE2910	3163758	3164579	+	phosphotransferase	YbhA%3B catalyzes the dephosphorylation of pyridoxal phosphate%2C fructose 1%2C6-bisphosphate%2C erythrose 4-phosphate and p-nitrophenyl phosphate%3B purine and pyrimidine nucleotides are secondary substrates%3B phosphotransferase activity observed when using monophosphates as phosphate donor%3B member of the haloacid dehalogenase-like hydrolases superfamily	gene	gene2851	http://www.ncbi.nlm.nih.gov/gene/?term=YE2910
YE2911	YE2911	modC	modC	3164739	3165803	-	molybdate transporter ATP-binding protein	Part of the ABC transporter complex modABC involved in molybdenum import	gene	gene2852	http://www.ncbi.nlm.nih.gov/gene/?term=YE2911
YE2912	YE2912	modB	modB	3165797	3166492	-	molybdate ABC transporter permease	part of ModCBA molybdate transporter%3B member of ABC superfamily%3B inner membrane component%3B regulated by repressor protein ModE	gene	gene2853	http://www.ncbi.nlm.nih.gov/gene/?term=YE2912
YE2913	YE2913	modA	modA	3166492	3167268	-	molybdate transporter substrate-binding protein	with ModCB is involved in the high-affinity transport of molybdate	gene	gene2854	http://www.ncbi.nlm.nih.gov/gene/?term=YE2913
YE2913A	YE2913A		YE2913A	3167485	3167625	-	hypothetical protein	Similar to Yersinia pestis putative membrane protein Ypo1144 or y3038 SWALL:Q8ZGX9 (EMBL:AJ414146) (50 aa) fasta scores: E(): 6.1e-14%2C 84.78 38d in 46 aa%2C and to Escherichia coli%2C Escherichia coli O6%2C Escherichia coli O157:H7%2C and Shigella flexneri hypothetical protein ybht precursor ybht or b0762 or c0838 or z0932 or ecs0790 or sf0542 SWALL:YBHT_ECOLI (SWALL:P75759) (49 aa) fasta scores: E(): 2.1e-10%2C 80 38d in 40 aa	gene	gene2855	http://www.ncbi.nlm.nih.gov/gene/?term=YE2913A
YE2914	YE2914	modE	modE	3167860	3168651	+	DNA-binding transcriptional regulator ModE	represses the modABCD operon and activates the moaABCD and napFDAGHBC operons	gene	gene2856	http://www.ncbi.nlm.nih.gov/gene/?term=YE2914
YE2915	YE2915	modF	modF	3168942	3170435	+	molybdenum transport ATP-binding protein ModF	contains 2 ATP-binding cassettes%3B involved in the transport of molybdenum	gene	gene2857	http://www.ncbi.nlm.nih.gov/gene/?term=YE2915
YE2916	YE2916		YE2916	3170637	3171455	+	hypothetical protein		gene	gene2858	http://www.ncbi.nlm.nih.gov/gene/?term=YE2916
YE2917	YE2917	galD	galD	3171753	3172769	+	UDP-galactose-4-epimerase		gene	gene2859	http://www.ncbi.nlm.nih.gov/gene/?term=YE2917
YE2918	YE2918	galB	galB	3172779	3173885	+	galactose-1-phosphate uridylyltransferase	catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P	gene	gene2860	http://www.ncbi.nlm.nih.gov/gene/?term=YE2918
YE2919	YE2919	galA	galA	3173885	3175036	+	galactokinase	catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism	gene	gene2861	http://www.ncbi.nlm.nih.gov/gene/?term=YE2919
YE2920	YE2920	galM	galM	3175030	3176094	+	aldose 1-epimerase	catalyzes the conversion of alpha-aldose to the beta-anomer%3B active on D-glucose%2C L-arabinose%2C D-xylose%2C D-galactose%2C maltose and lactose%3B links the metabolism of lactose and galactose	gene	gene2862	http://www.ncbi.nlm.nih.gov/gene/?term=YE2920
YE2921	YE2921	psiF	psiF	3176269	3176604	+	starvation-inducible protein		gene	gene2863	http://www.ncbi.nlm.nih.gov/gene/?term=YE2921
YE2922	YE2922		YE2922	3176908	3178587	+	protease	No significant database matches to the full length CDS. N-terminal region is similar to Bacillus licheniformis extracellular alkaline proteinase%2Csubtilisin DY Apr SWALL:SUBD_BACLI (SWALL:P00781) (274 aa) fasta scores: E(): 5.8e-15%2C 34.23 38d in 260 aa	gene	gene2864	http://www.ncbi.nlm.nih.gov/gene/?term=YE2922
YE2923	YE2923	nuc	nuc	3178753	3179604	+	DNA/RNA non-specific endonuclease	Similar to Serratia marcescens nuclease precursor NucA or Nuc SWALL:NUCA_SERMA (SWALL:P13717) (266 aa) fasta scores: E(): 5.5e-55%2C 60.16 38d in 241 aa%2C and to Salmonella typhimurium putative DNA/RNA non-specific endonuclease STM1330 SWALL:Q8ZPT1 (EMBL:AE008757) (284 aa) fasta scores: E(): 1.4e-67%2C 63.7 38d in 281 aa	gene	gene2865	http://www.ncbi.nlm.nih.gov/gene/?term=YE2923
YE2924	YE2924	gpmA	gpmA	3179811	3180563	+	phosphoglyceromutase	2%2C3-bisphosphoglycerate-dependent%3B catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate	gene	gene2866	http://www.ncbi.nlm.nih.gov/gene/?term=YE2924
YE2925	YE2925	aroG	aroG	3180666	3181748	-	phospho-2-dehydro-3-deoxyheptonate aldolase	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C phenylalanine sensitive	gene	gene2867	http://www.ncbi.nlm.nih.gov/gene/?term=YE2925
YE2926	YE2926		YE2926	3181963	3182895	+	zinc transporter ZitB	involved in zinc efflux across the cytoplasmic membrane	gene	gene2868	http://www.ncbi.nlm.nih.gov/gene/?term=YE2926
YE2927	YE2927	pnuC	pnuC	3182971	3183699	-	intergral membrane NMN transport protein PnuC		gene	gene2869	http://www.ncbi.nlm.nih.gov/gene/?term=YE2927
YE2928	YE2928	nadA	nadA	3183947	3185008	-	quinolinate synthetase	3 different subfamilies%3B catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate	gene	gene2870	http://www.ncbi.nlm.nih.gov/gene/?term=YE2928
YE2930	YE2930		YE2930	3186154	3186963	-	tol-pal system protein YbgF	periplasmic protein that interacts with TolA%3B the tol-pal system is probably involved in maintaining cell envelope integrity	gene	gene2876	http://www.ncbi.nlm.nih.gov/gene/?term=YE2930
YE2931	YE2931	excC	excC	3186973	3187479	-	peptidoglycan-associated outer membrane lipoprotein		gene	gene2877	http://www.ncbi.nlm.nih.gov/gene/?term=YE2931
YE2932	YE2932	tolB	tolB	3187528	3188820	-	translocation protein TolB	forms dimers%3B may be involved in cell envelope integrity%3B interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA	gene	gene2878	http://www.ncbi.nlm.nih.gov/gene/?term=YE2932
YE2933	YE2933	tolA	tolA	3188940	3190100	-	cell envelope integrity inner membrane protein TolA	inner membrane component of 7 member Tol-Pal envelope-spanning complex%3B involved in maintaining cell envelope integrity%3B utilized by colicins and filamentous phages for import%3B interacts with TolB%2C Pal%2C and through TolB to various outer membrane porins	gene	gene2879	http://www.ncbi.nlm.nih.gov/gene/?term=YE2933
YE2934	YE2934	tolR	tolR	3190197	3190625	-	colicin uptake protein TolR	membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins	gene	gene2880	http://www.ncbi.nlm.nih.gov/gene/?term=YE2934
YE2935	YE2935	tolQ	tolQ	3190638	3191324	-	colicin uptake protein TolQ	membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins	gene	gene2881	http://www.ncbi.nlm.nih.gov/gene/?term=YE2935
YE2936	YE2936		YE2936	3191324	3191725	-	acyl-CoA thioester hydrolase YbgC	catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters%3B physiological role remains unknown%3B involved in phospholipid metabolism%3B part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components	gene	gene2882	http://www.ncbi.nlm.nih.gov/gene/?term=YE2936
YE2937	YE2937		YE2937	3191873	3192205	-	hypothetical protein		gene	gene2883	http://www.ncbi.nlm.nih.gov/gene/?term=YE2937
YE2938	YE2938	cydB	cydB	3192297	3193436	-	cytochrome D ubiquinol oxidase subunit II		gene	gene2884	http://www.ncbi.nlm.nih.gov/gene/?term=YE2938
YE2939	YE2939	cydA	cydA	3193451	3195019	-	cytochrome D ubiquinol oxidase subunit I		gene	gene2885	http://www.ncbi.nlm.nih.gov/gene/?term=YE2939
YE2940	YE2940		YE2940	3195608	3197506	+	5'-nucleotidase	Similar to Vibrio cholerae putative 2`%2C3`-cyclic-nucleotide 2`-phosphodiesterase VC2416 SWALL:Q9KPF2 (EMBL:AE004311) (634 aa) fasta scores: E(): 3.1e-163%2C 68.97 38d in 635 aa%2C and to Vibrio parahaemolyticus 5'-nucleotidase precursor NutA SWALL:5NTD_VIBPA (SWALL:P22848) (560 aa) fasta scores: E(): 1.9e-11%2C 25.86 38d in 518 aa	gene	gene2886	http://www.ncbi.nlm.nih.gov/gene/?term=YE2940
YE2941	YE2941	sucD	sucD	3197578	3198456	-	succinyl-CoA synthetase subunit alpha	Catalyzes the only substrate-level phosphorylation in the TCA cycle	gene	gene2887	http://www.ncbi.nlm.nih.gov/gene/?term=YE2941
YE2942	YE2942	sucC	sucC	3198456	3199622	-	succinyl-CoA synthetase subunit beta	catalyzes the interconversion of succinyl-CoA and succinate	gene	gene2888	http://www.ncbi.nlm.nih.gov/gene/?term=YE2942
YE2943	YE2943	sucB	sucB	3199736	3200959	-	dihydrolipoamide succinyltransferase	component of 2-oxoglutarate dehydrogenase complex%3B catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA	gene	gene2889	http://www.ncbi.nlm.nih.gov/gene/?term=YE2943
YE2944	YE2944	sucA	sucA	3200988	3203795	-	2-oxoglutarate dehydrogenase E1 component	SucA%3B E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate%3B SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide	gene	gene2890	http://www.ncbi.nlm.nih.gov/gene/?term=YE2944
YE2945	YE2945	sdhB	sdhB	3204090	3204806	-	succinate dehydrogenase iron-sulfur subunit	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol%3B the catalytic subunits are similar to fumarate reductase	gene	gene2891	http://www.ncbi.nlm.nih.gov/gene/?term=YE2945
YE2946	YE2946	sdhA	sdhA	3204860	3206626	-	succinate dehydrogenase flavoprotein subunit	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol	gene	gene2892	http://www.ncbi.nlm.nih.gov/gene/?term=YE2946
YE2947	YE2947	sdhD	sdhD	3206627	3206974	-	succinate dehydrogenase cytochrome b556 small membrane subunit		gene	gene2893	http://www.ncbi.nlm.nih.gov/gene/?term=YE2947
YE2948	YE2948	sdhC	sdhC	3206968	3207357	-	succinate dehydrogenase cytochrome b556 large membrane subunit		gene	gene2894	http://www.ncbi.nlm.nih.gov/gene/?term=YE2948
YE2949	YE2949	gltA	gltA	3208007	3209287	+	type II citrate synthase	type II enzyme%3B in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate%3B allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation%3B forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A%3B functions in TCA cycle%2C glyoxylate cycle and respiration%3B enzyme from Helicobacter pylori is not inhibited by NADH	gene	gene2895	http://www.ncbi.nlm.nih.gov/gene/?term=YE2949
YE2950	YE2950	pcp	pcp	3209353	3210000	-	pyrrolidone-carboxylate peptidase	catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline	gene	gene2896	http://www.ncbi.nlm.nih.gov/gene/?term=YE2950
YE2951	YE2951		YE2951	3210009	3211028	-	hypothetical protein		gene	gene2897	http://www.ncbi.nlm.nih.gov/gene/?term=YE2951
YE2952	YE2952		YE2952	3211025	3211756	-	hypothetical protein		gene	gene2898	http://www.ncbi.nlm.nih.gov/gene/?term=YE2952
YE2953	YE2953		YE2953	3211847	3212584	-	LamB/YcsF family protein		gene	gene2899	http://www.ncbi.nlm.nih.gov/gene/?term=YE2953
YE2954	YE2954		YE2954	3212581	3213531	-	hypothetical protein		gene	gene2900	http://www.ncbi.nlm.nih.gov/gene/?term=YE2954
YE2955	YE2955		YE2955	3214601	3215344	-	hydrolase-oxidase		gene	gene2902	http://www.ncbi.nlm.nih.gov/gene/?term=YE2955
YE2955A	YE2955A		YE2955A	3213525	3214181	-	hypothetical protein	Similar to many of undefined function including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YbgJ or b0711 or z0862 or ecs0736 SWALL:YBGJ_ECOLI (SWALL:P75744) (218 aa) fasta scores: E(): 9.9e-64%2C 72.93 38d in 218 aa and to Yersinia pestis putative carboxylase y1273 SWALL:Q8D108 (EMBL:AE013730) (181 aa) fasta scores: E(): 1.3e-64%2C 91.71 38d in 181 aa	gene	gene2901	http://www.ncbi.nlm.nih.gov/gene/?term=YE2955A
YE2956	YE2956		YE2956	3215377	3216342	-	3'%2C5'-cyclic-nucleotide phosphodiesterase		gene	gene2903	http://www.ncbi.nlm.nih.gov/gene/?term=YE2956
YE2957	YE2957	phr	phr	3216448	3217893	-	deoxyribodipyrimidine photolyase	UV-induced DNA repair%3B converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers%3B light dependent	gene	gene2904	http://www.ncbi.nlm.nih.gov/gene/?term=YE2957
YE2958	YE2958		YE2958	3217897	3218382	-	hypothetical protein		gene	gene2905	http://www.ncbi.nlm.nih.gov/gene/?term=YE2958
YE2959	YE2959	ybfA	ybfA	3218478	3218684	-	hypothetical protein		gene	gene2906	http://www.ncbi.nlm.nih.gov/gene/?term=YE2959
YE2960	YE2960	kdpA	kdpA	3219258	3220946	+	potassium-transporting ATPase subunit A	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions	gene	gene2907	http://www.ncbi.nlm.nih.gov/gene/?term=YE2960
YE2961	YE2961	kdpB	kdpB	3221042	3223108	+	potassium-transporting ATPase subunit B	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions	gene	gene2908	http://www.ncbi.nlm.nih.gov/gene/?term=YE2961
YE2962	YE2962	kdpC	kdpC	3223244	3223846	+	potassium-transporting ATPase subunit C	One of the components of the high-affinity ATP-driven potassium transport (or KDP)system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex	gene	gene2909	http://www.ncbi.nlm.nih.gov/gene/?term=YE2962
YE2963	YE2963	kdpD	kdpD	3223856	3226555	+	sensor protein KdpD	sensory histidine kinase in two-component regulatory system with KdpE%3B signal sensing protein	gene	gene2910	http://www.ncbi.nlm.nih.gov/gene/?term=YE2963
YE2964	YE2964	kdpE	kdpE	3226552	3227241	+	two-component regulatory protein response regulator KdpE		gene	gene2911	http://www.ncbi.nlm.nih.gov/gene/?term=YE2964
YE2965	YE2965		YE2965	3227334	3227762	+	hypothetical protein		gene	gene2912	http://www.ncbi.nlm.nih.gov/gene/?term=YE2965
YE2966	YE2966		YE2966	3227908	3229359	+	hemolysin	No significant database matches to the full length CDS. Internal region is similar to the C-terminal region of Actinobacillus pleuropneumoniae RTX-III toxin determinant A from serotype 2 ApxIIIA or ClyIIIA or RtxA or PtxA SWALL:RT31_ACTPL (SWALL:P55130) (1049 aa) fasta scores: E(): 9.5e-13%2C 27.82 38d in 345 aa	gene	gene2913	http://www.ncbi.nlm.nih.gov/gene/?term=YE2966
YE2967	YE2967	pgm	pgm	3229442	3231082	-	phosphoglucomutase	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate	gene	gene2914	http://www.ncbi.nlm.nih.gov/gene/?term=YE2967
YE2968	YE2968	seqA	seqA	3231175	3231714	-	replication initiation regulator SeqA	negative modulator of the initiation of chromosome replication	gene	gene2915	http://www.ncbi.nlm.nih.gov/gene/?term=YE2968
YE2969	YE2969		YE2969	3231928	3232722	+	hypothetical protein		gene	gene2916	http://www.ncbi.nlm.nih.gov/gene/?term=YE2969
YE2970	YE2970		YE2970	3233066	3233353	+	LexA regulated protein		gene	gene2917	http://www.ncbi.nlm.nih.gov/gene/?term=YE2970
YE2971	YE2971		YE2971	3233420	3235078	-	methyl-accepting chemotaxis protein	Similar to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar or CheM SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 1.2e-66%2C 46.69 id in 559 aa%2C and to Yersinia pestis methyl-accepting chemotaxis protein YPO1675 SWALL:Q8ZFM2 (EMBL:AJ414149) (557 aa) fasta scores: E(): 1.1e-66%2C 46.16 38d in 574 aa	gene	gene2918	http://www.ncbi.nlm.nih.gov/gene/?term=YE2971
YE2972	YE2972	fldA	fldA	3235301	3235828	+	flavodoxin FldA	An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group	gene	gene2919	http://www.ncbi.nlm.nih.gov/gene/?term=YE2972
YE2973	YE2973	fur	fur	3236197	3236643	+	ferric uptake regulator	negatively regulates a number of operons that encode enzymes involved in iron transport%3B activated by manganese%3B forms a homodimer	gene	gene2920	http://www.ncbi.nlm.nih.gov/gene/?term=YE2973
YE2974	YE2974	chb	chb	3237040	3239715	-	chitobiase	Similar to Serratia marcescens chitobiase precursor Chb SWALL:CHB_SERMA (SWALL:Q54468) (885 aa) fasta scores: E(): 0%2C 76.48 38d in 889 aa%2C and to Enterobacter sp N-acetyl-beta-D-glucosaminidase Nag1 SWALL:Q9ZN69 (EMBL:AB022786) (885 aa) fasta scores: E(): 0%2C 76.37 38d in 889 aa	gene	gene2921	http://www.ncbi.nlm.nih.gov/gene/?term=YE2974
YE2975	YE2975		YE2975	3239808	3240134	-	lipoprotein	Similar to Salmonella typhi putative lipoprotein STY0726 SWALL:Q8Z8F7 (EMBL:AL627267) (110 aa) fasta scores: E(): 4e-23%2C 58.33 38d in 108 aa%2C and to Salmonella typhimurium putative lipoprotein STM0688 SWALL:Q8ZQX4 (EMBL:AE008727) (110 aa) fasta scores: E(): 4.6e-23%2C58.33 38d in 108 aa	gene	gene2922	http://www.ncbi.nlm.nih.gov/gene/?term=YE2975
YE2976	YE2976	ybfM	ybfM	3240195	3241598	-	hypothetical protein		gene	gene2923	http://www.ncbi.nlm.nih.gov/gene/?term=YE2976
YE2977	YE2977	glnS	glnS	3242234	3243901	-	glutaminyl-tRNA synthetase	catalyzes a two-step reaction%2C first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA	gene	gene2924	http://www.ncbi.nlm.nih.gov/gene/?term=YE2977
YE2978	YE2978	nagE	nagE	3244095	3246128	-	PTS system N-acetylglucosamine-specific transporter subunit IIABC		gene	gene2925	http://www.ncbi.nlm.nih.gov/gene/?term=YE2978
YE2979	YE2979	nagB	nagB	3246499	3247299	+	glucosamine-6-phosphate deaminase	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate	gene	gene2926	http://www.ncbi.nlm.nih.gov/gene/?term=YE2979
YE2980	YE2980	nagA	nagA	3247319	3248464	+	N-acetylglucosamine-6-phosphate deacetylase	catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate	gene	gene2927	http://www.ncbi.nlm.nih.gov/gene/?term=YE2980
YE2981	YE2981	nagC	nagC	3248478	3249701	+	N-acetylglucosamine regulatory protein		gene	gene2928	http://www.ncbi.nlm.nih.gov/gene/?term=YE2981
YE2982	YE2982	nagD	nagD	3249912	3250664	+	UMP phosphatase		gene	gene2929	http://www.ncbi.nlm.nih.gov/gene/?term=YE2982
YE2983	YE2983	asnB	asnB	3251009	3252673	+	asparagine synthetase B	functions in asparagine biosynthesis%3B converts glutamine%2C aspartate%2C ATP%2C and water to glutamate%2C asparagine%2C pyrophosphate and AMP	gene	gene2930	http://www.ncbi.nlm.nih.gov/gene/?term=YE2983
YE2984	YE2984	ubiF	ubiF	3253760	3254941	-	2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase	catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1%2C4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol%3B functions in the biosynthesis of ubiquinone or coenzyme Q	gene	gene2937	http://www.ncbi.nlm.nih.gov/gene/?term=YE2984
YE2985	YE2985	miaB	miaB	3255184	3256608	+	(dimethylallyl)adenosine tRNA methylthiotransferase	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)	gene	gene2938	http://www.ncbi.nlm.nih.gov/gene/?term=YE2985
YE2986	YE2986		YE2986	3256887	3257978	+	hypothetical protein		gene	gene2939	http://www.ncbi.nlm.nih.gov/gene/?term=YE2986
YE2987	YE2987		YE2987	3257975	3258448	+	metalloprotease		gene	gene2940	http://www.ncbi.nlm.nih.gov/gene/?term=YE2987
YE2988	YE2988	ybeX	ybeX	3258563	3259441	+	hypothetical protein		gene	gene2941	http://www.ncbi.nlm.nih.gov/gene/?term=YE2988
YE2989	YE2989	lnt	lnt	3259449	3261026	+	apolipoprotein N-acyltransferase	Transfers the fatty acyl group on membrane lipoproteins	gene	gene2942	http://www.ncbi.nlm.nih.gov/gene/?term=YE2989
YE2990	YE2990		YE2990	3261035	3261619	+	hypothetical protein	Similar to Rhizobium loti hypothetical protein MLL0539 SWALL:Q98MK8 (EMBL:AP002995) (203 aa) fasta scores: E(): 5.2e-31%2C 46.89 38d in 177 aa%2C and to Caulobacter crescentus hypothetical protein CC2577 SWALL:Q9A580 (EMBL:AE005926) (204 aa) fasta scores: E(): 7.7e-27%2C 44.11 38d in 170 aa	gene	gene2943	http://www.ncbi.nlm.nih.gov/gene/?term=YE2990
YE2991	YE2991	glnH	glnH	3262206	3263120	+	glutamate and aspartate transporter subunit		gene	gene2944	http://www.ncbi.nlm.nih.gov/gene/?term=YE2991
YE2992	YE2992	gltJ	gltJ	3263298	3264038	+	glutamate/aspartate ABC transporter permease		gene	gene2945	http://www.ncbi.nlm.nih.gov/gene/?term=YE2992
YE2993	YE2993	gltK	gltK	3264038	3264712	+	glutamate/aspartate ABC transporter permease		gene	gene2946	http://www.ncbi.nlm.nih.gov/gene/?term=YE2993
YE2994	YE2994	gltL	gltL	3264709	3265437	+	glutamate/aspartate ABC transporter ATP-binding protein		gene	gene2947	http://www.ncbi.nlm.nih.gov/gene/?term=YE2994
YE2995	YE2995		YE2995	3265493	3265975	-	hypothetical protein		gene	gene2948	http://www.ncbi.nlm.nih.gov/gene/?term=YE2995
YE2996	YE2996	leuS	leuS	3266354	3268936	+	leucyl-tRNA synthetase	leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA(Leu) recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase	gene	gene2949	http://www.ncbi.nlm.nih.gov/gene/?term=YE2996
YE2997	YE2997	rlpB	rlpB	3268951	3269574	+	LPS-assembly lipoprotein RlpB	rare lipoprotein B%3B involved in the assembly of LPS in the outer membrane	gene	gene2950	http://www.ncbi.nlm.nih.gov/gene/?term=YE2997
YE2998	YE2998	holA	holA	3269571	3270605	+	DNA polymerase III subunit delta	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA	gene	gene2951	http://www.ncbi.nlm.nih.gov/gene/?term=YE2998
YE2999	YE2999	nadD	nadD	3270595	3271257	+	nicotinic acid mononucleotide adenylyltransferase	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase%3B essential enzyme in bacteria	gene	gene2952	http://www.ncbi.nlm.nih.gov/gene/?term=YE2999
YE3000	YE3000		YE3000	3271557	3271874	+	hypothetical protein		gene	gene2953	http://www.ncbi.nlm.nih.gov/gene/?term=YE3000
YE3001	YE3001		YE3001	3271878	3272348	+	rRNA large subunit methyltransferase	SPOUT methyltransferase family protein%3B crystal structure shows homodimer%3B in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA	gene	gene2954	http://www.ncbi.nlm.nih.gov/gene/?term=YE3001
YE3002	YE3002	mrdA	mrdA	3272423	3274318	+	penicillin-binding protein 2		gene	gene2955	http://www.ncbi.nlm.nih.gov/gene/?term=YE3002
YE3003	YE3003	mrdB	mrdB	3274355	3275467	+	cell wall shape-determining protein		gene	gene2956	http://www.ncbi.nlm.nih.gov/gene/?term=YE3003
YE3004	YE3004	rlpA	rlpA	3275477	3276574	+	rare lipoprotein A		gene	gene2957	http://www.ncbi.nlm.nih.gov/gene/?term=YE3004
YE3005	YE3005	dacA	dacA	3276788	3277999	+	D-alanyl-D-alanine carboxypeptidase	penicillin-binding protein 5%3B removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors	gene	gene2958	http://www.ncbi.nlm.nih.gov/gene/?term=YE3005
YE3006	YE3006		YE3006	3278148	3278411	+	hypothetical protein		gene	gene2959	http://www.ncbi.nlm.nih.gov/gene/?term=YE3006
YE3007	YE3007	lipB	lipB	3278566	3279279	+	lipoate-protein ligase B	lipoyl/octanoyltransferase%3B catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein	gene	gene2960	http://www.ncbi.nlm.nih.gov/gene/?term=YE3007
YE3008	YE3008	lip	lip	3279468	3280433	+	lipoyl synthase	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group	gene	gene2961	http://www.ncbi.nlm.nih.gov/gene/?term=YE3008
YE3009	YE3009	tatE	tatE	3280576	3280791	-	twin arginine translocase protein A	TatE%3B similar to TatA and found in some proteobacteria%3B part of system that translocates proteins with a conserved twin arginine motif across the inner membrane%3B capable of translocating folded substrates typically those with bound cofactors%3B similar to a protein import system in thylakoid membranes	gene	gene2962	http://www.ncbi.nlm.nih.gov/gene/?term=YE3009
YE3010	YE3010	adrA	adrA	3280995	3282047	+	diguanylate cyclase/phosphodiesterase domain-containing protein	Similar to the C-terminal regions of Salmonella typhimurium putative diguanylate cyclase/phosphodiesterase domain 1 protein AdrA SWALL:Q9L401 (EMBL:AJ271071) (370 aa) fasta scores: E(): 8.9e-62%2C 47.67 38d in 344 aa%2C and Escherichia coli hypothetical protein YaiC SWALL:YAIC_ECOLI (SWALL:P21830) (371 aa) fasta scores: E(): 6.7e-64%2C 46.28 38d in 350 aa. CDS appears to be truncated at the N-terminus in comparison to orthologues. Possible pseudogene	gene	gene2963	http://www.ncbi.nlm.nih.gov/gene/?term=YE3010
YE3011	YE3011	crcB	crcB	3282095	3282478	+	camphor resistance protein CrcB	may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling	gene	gene2964	http://www.ncbi.nlm.nih.gov/gene/?term=YE3011
YE3012	YE3012	cspE	cspE	3282778	3282987	-	cold shock protein CspE	member of the CspA family%3B constitutively expressed RNA/ssDNA-binding protein%3B functions in helping cells adapt to low temperature%3B aids nucleic acid melting%3B participates in gene regulation%3B can act as a transcription antiterminator	gene	gene2965	http://www.ncbi.nlm.nih.gov/gene/?term=YE3012
YE3013	YE3013		YE3013	3283254	3283733	+	hypothetical protein		gene	gene2966	http://www.ncbi.nlm.nih.gov/gene/?term=YE3013
YE3014	YE3014		YE3014	3283919	3284530	-	LuxR family regulatory protein		gene	gene2967	http://www.ncbi.nlm.nih.gov/gene/?term=YE3014
YE3015	YE3015		YE3015	3284883	3285848	+	hypothetical protein		gene	gene2968	http://www.ncbi.nlm.nih.gov/gene/?term=YE3015
YE3016	YE3016		YE3016	3285999	3286643	-	serine/threonine protein phosphatase	Similar to Bacteriophage lambda serine/threonine protein phosphatase SWALL:PP_LAMBD (SWALL:P03772) (221 aa) fasta scores: E(): 3.3e-48%2C 56.74 38d in 215 aa%2C and to Escherichia coli serine/threonine protein phosphatase 1 PphA or PrpA SWALL:PRP1_ECOLI (SWALL:P55798) (218 aa) fasta scores: E(): 6.3e-42%2C 50.93 38d in 214 aa	gene	gene2969	http://www.ncbi.nlm.nih.gov/gene/?term=YE3016
YE3017	YE3017		YE3017	3286894	3287088	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein STY4108 SWALL:Q8Z2E1 (EMBL:AL627280) (68 aa) fasta scores: E(): 0.31%2C 34 38d in 50 aa%2C and to Yersinia pestis hypothetical protein YPO2590 SWALL:Q8ZDH8 (EMBL:AJ414153) (64 aa) fasta scores: E(): 2.5e-16%2C 82.54 38d in 63 aa	gene	gene2970	http://www.ncbi.nlm.nih.gov/gene/?term=YE3017
YE3018	YE3018		YE3018	3287435	3287722	+	hypothetical protein		gene	gene2971	http://www.ncbi.nlm.nih.gov/gene/?term=YE3018
YE3019	YE3019		YE3019	3287740	3289512	-	ABC transporter		gene	gene2972	http://www.ncbi.nlm.nih.gov/gene/?term=YE3019
YE3020	YE3020		YE3020	3290029	3291504	-	lyase	Similar to Pseudomonas aeruginosa hypothetical protein PA0254 SWALL:Q9I6N5 (EMBL:AE004463) (496 aa) fasta scores: E(): 7.4e-63%2C 35.23 38d in 491 aa. Weakly similar to Escherichia coli 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD SWALL:UBID_ECOLI (SWALL:P26615) (497 aa) fasta scores: E(): 1.5e-16%2C 26.17 38d in 470 aa	gene	gene2973	http://www.ncbi.nlm.nih.gov/gene/?term=YE3020
YE3021	YE3021		YE3021	3291534	3293129	-	phenylalanine and histidine ammonia-lyase	Similar to an internal region of Oryza sativa phenylalanine ammonia-lyase ZB8 SWALL:PAL2_ORYSA (SWALL:P53443) (710 aa) fasta scores: E(): 3.4e-28%2C 31.02 id in 506 aa%2C and to full length Streptomyces maritimus putative phenylalanine ammonia lyase EncP SWALL:Q9KHJ9 (EMBL:AF254925) (523 aa) fasta scores: E(): 1.6e-46%2C29.78 38d in 517 aa	gene	gene2974	http://www.ncbi.nlm.nih.gov/gene/?term=YE3021
YE3022	YE3022		YE3022	3293587	3294708	-	hypothetical protein	Similar to Escherichia coli hypothetical protein YcfD SWALL:YCFD_ECOLI (SWALL:P27431) (373 aa) fasta scores: E(): 3.4e-107%2C 66.12 38d in 372 aa%2C and to Salmonella typhimurium putative cytoplasmic protein STM1229 SWALL:Q8ZPZ7 (EMBL:AE008753) (373 aa) fasta scores: E(): 3.5e-106%2C 63.97 38d in 372 aa	gene	gene2975	http://www.ncbi.nlm.nih.gov/gene/?term=YE3022
YE3023	YE3023		YE3023	3295097	3296053	-	hypothetical protein		gene	gene2976	http://www.ncbi.nlm.nih.gov/gene/?term=YE3023
YE3024	YE3024	copR	copR	3296382	3297071	+	transcriptional activator		gene	gene2977	http://www.ncbi.nlm.nih.gov/gene/?term=YE3024
YE3025	YE3025		YE3025	3297087	3298562	+	two-component system sensor protein		gene	gene2978	http://www.ncbi.nlm.nih.gov/gene/?term=YE3025
YE3026	YE3026		YE3026	3298631	3298987	+	hypothetical protein	No significant database matches to the full length CDS. N-terminus is similar to the N-terminal region of Yersinia pestis putative exported protein YPO1998 SWALL:Q8ZEZ8 (EMBL:AJ414151) (156 aa) fasta scores: E(): 4.8e-10%2C 41.59 38d in 113 aa. C-terminus is similar to an internal region of Brucella melitensis transcriptional regulator BMEII0800 SWALL:Q8YBT6 (EMBL:AE009714) (159 aa) fasta scores: E(): 5.3e-13%2C 55.55 38d in 81 aa	gene	gene2979	http://www.ncbi.nlm.nih.gov/gene/?term=YE3026
YE3027	YE3027		YE3027	3299086	3299850	+	hypothetical protein	Similar to Xylella fastidiosa hypothetical protein XF1766 SWALL:Q9PCL2 (EMBL:AE003999) (260 aa) fasta scores: E(): 2e-47%2C 58.43 38d in 255 aa%2C and weakly similar to Rhizobium meliloti putative 4-carboxymuconolactone decarboxylase RA0292 or SMA0559 SWALL:Q930A6 (EMBL:AE007221) (259 aa) fasta scores: E(): 0.12%2C 25.37 id in 201 aa	gene	gene2980	http://www.ncbi.nlm.nih.gov/gene/?term=YE3027
YE3028	YE3028		YE3028	3299947	3301009	+			gene	gene2981	http://www.ncbi.nlm.nih.gov/gene/?term=YE3028
YE3031	YE3031		YE3031	3301140	3301991	+	aldo/keto reductase		gene	gene2982	http://www.ncbi.nlm.nih.gov/gene/?term=YE3031
YE3032	YE3032		YE3032	3302151	3302477	-	hypothetical protein	Similar to Yersinia pestis hypothetical protein DffD SWALL:Q93AB2 (EMBL:AF426171) (109 aa) fasta scores: E(): 8.8e-35%2C 78.7 38d in 108 aa%2C and to Bacillus halodurans hypothetical protein BH0200 SWALL:Q9KGB0 (EMBL:AP001507) (107 aa) fasta scores: E(): 0.53%2C 27.55 id in 98 aa	gene	gene2983	http://www.ncbi.nlm.nih.gov/gene/?term=YE3032
YE3033	YE3033		YE3033	3302712	3303623	+	LysR family transcriptional regulator	Similar to Yersinia pestis putative transcriptional regulator SWALL:Q93AB4 (EMBL:AF426171) (303 aa) fasta scores: E(): 1.6e-101%2C 86.13 38d in 303 aa%2C and to Rhizobium loti probable transcriptional regulator MLR2579 SWALL:Q98I42 (EMBL:AP003000) (304 aa) fasta scores: E(): 6.3e-45%2C 45.76 38d in 295 aa	gene	gene2984	http://www.ncbi.nlm.nih.gov/gene/?term=YE3033
YE3034	YE3034		YE3034	3303626	3304741	-	NADH:flavin oxidoreductase / NADH oxidase family protein	Similar to Pseudomonas putida morphinone reductase MorB SWALL:Q51990 (EMBL:U37350) (377 aa) fasta scores: E(): 1e-64%2C 48.64 38d in 368 aa%2C and to Yersinia pestis morphinone reductase MorB SWALL:Q93AB5 (EMBL:AF426171) (369 aa) fasta scores: E(): 9.5e-113%2C 77.26 38d in 365 aa	gene	gene2985	http://www.ncbi.nlm.nih.gov/gene/?term=YE3034
YE3035	YE3035		YE3035	3305377	3305715	+	hypothetical protein		gene	gene2986	http://www.ncbi.nlm.nih.gov/gene/?term=YE3035
YE3036	YE3036		YE3036	3305700	3306347	+	hypothetical protein	No significant database matches to the full length CDS. C-terminal region is highly similar to Yersinia pestis hypothetical protein YPO2821 SWALL:Q8ZCY4 (EMBL:AJ414153) (115 aa) fasta scores: E(): 7.3e-41%2C97.39 38d in 115 aa	gene	gene2987	http://www.ncbi.nlm.nih.gov/gene/?term=YE3036
YE3037	YE3037		YE3037	3306442	3306741	+			gene	gene2988	http://www.ncbi.nlm.nih.gov/gene/?term=YE3037
YE3039	YE3039		YE3039	3307405	3308364	+	hypothetical protein	Similar to Salmonella typhimurium putative outer membrane protein STM1328 SWALL:Q8ZPT3 (EMBL:AE008757) (319 aa) fasta scores: E(): 5.5e-93%2C 71.87 38d in 320 aa%2C and to Salmonella typhi putative outer membrane protein STY1783 SWALL:Q8Z6H9 (EMBL:AL627271) (319 aa) fasta scores: E(): 5.5e-93%2C 71.87 38d in 320 aa	gene	gene2989	http://www.ncbi.nlm.nih.gov/gene/?term=YE3039
YE3040	YE3040		YE3040	3308773	3309072	+	transposase for insertion element IS3	Similar to several transposases including: Escherichia coli transposase InsE for insertion sequence IS3a/b/c/d/e/fa/fb SWALL:INSE_ECOLI (SWALL:P77681) (102 aa) fasta scores: E(): 6.2e-26%2C 82.82 38d in 99 aa and to Salmonella enteritidis insertion sequence IS1230 SWALL:O34117 (EMBL:U91789) (177 aa) fasta scores: E(): 2.9e-11%2C 80.7 38d in 57 aa	gene	gene2990	http://www.ncbi.nlm.nih.gov/gene/?term=YE3040
YE3041	YE3041		YE3041	3309069	3309461	+	transposase for insertion element IS3	Similar in parts to many including: Escherichia coli TnP protein SWALL:Q93K84 (EMBL:X16664) (284 aa) fasta scores: E(): 4.9e-25%2C 40.49 38d in 284 aa and to Escherichia coli transposase insF for insertion sequence IS3fb SWALL:INF7_ECOLI (SWALL:Q9JMT3) (288 aa) fasta scores: E(): 1.1e-23%2C 63.2 38d in 125 aa. This CDS may have been subject to a large deletion event removing the central portion of the predicted product.	gene	gene2991	http://www.ncbi.nlm.nih.gov/gene/?term=YE3041
YE3042	YE3042		YE3042	3309489	3310058	-	hypothetical protein	Similar to bacteriophage P27 hypothetical protein SWALL:Q8W610 (EMBL:AJ298298) (188 aa) fasta scores: E(): 1.5e-37%2C 56.21 38d in 185 aa%2C and to Escherichia coli hypothetical protein Orf-191A SWALL:Q9LA61 (EMBL:AF151091) (191 aa) fasta scores: E(): 1.1e-18%2C 36.87 38d in 179 aa	gene	gene2992	http://www.ncbi.nlm.nih.gov/gene/?term=YE3042
YE3043	YE3043	tnpA	tnpA	3310600	3310932	+	IS1329 transposase A	Previously sequenced as Yersinia enterocolitica IS1329 transposase A Trp1329A SWALL:Q9X9I2 (EMBL:AJ132945) (110 aa) fasta scores: E(): 1.8e-38%2C 100 38d in 110 aa. Also similar to Shigella dysenteriae transposase InsN for insertion sequence element IS911 SWALL:INSN_SHIDY (SWALL:P39213) (112 aa) fasta scores: E(): 7.6e-13%2C 42.45 id in 106 aa	gene	gene2993	http://www.ncbi.nlm.nih.gov/gene/?term=YE3043
YE3044	YE3044	tnpB	tnpB	3311022	3311771	+	transposase B	Previously sequenced as Yersinia enterocolitica transposase B TnpB SWALL:Q9RIG3 (EMBL:AJ251581) (249 aa) fasta scores: E(): 1.4e-104%2C 100 38d in 249 aa. Also similar to Xanthomonas axonopodis pv. citri str. 306 ISxac3 transposase Xac1661 SWALL:AAM36528 (EMBL:AE011798) (272 aa) fasta scores: E(): 3.4e-37%2C 44.13 38d in 247 aa	gene	gene2994	http://www.ncbi.nlm.nih.gov/gene/?term=YE3044
YE3045	YE3045	ads	ads	3312100	3312981	+	bifunctional 5%2C10-methylene-tetrahydrofolate dehydrogenase/ 5%2C10-methylene-tetrahydrofolate cyclohydrolase	catalyzes the formation of 5%2C10-methenyltetrahydrofolate from 5%2C10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5%2C10-methenyltetrahydrofolate	gene	gene2996	http://www.ncbi.nlm.nih.gov/gene/?term=YE3045
YE3046	YE3046		YE3046	3312981	3313193	+	hypothetical protein		gene	gene2997	http://www.ncbi.nlm.nih.gov/gene/?term=YE3046
YE3048	YE3048	cysS	cysS	3313398	3314783	-	cysteinyl-tRNA synthetase	catalyzes a two-step reaction%3B charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA	gene	gene2998	http://www.ncbi.nlm.nih.gov/gene/?term=YE3048
YE3049	YE3049	ppiB	ppiB	3314996	3315490	+	peptidyl-prolyl cis-trans isomerase B		gene	gene2999	http://www.ncbi.nlm.nih.gov/gene/?term=YE3049
YE3050	YE3050		YE3050	3315501	3316223	+	UDP-2%2C3-diacylglucosamine hydrolase	catalyzes the formation of 2%2C3%3Ddiacylglucosamine 1-phosphate from UDP-2%2C3%3Ddiacylglucosamine	gene	gene3000	http://www.ncbi.nlm.nih.gov/gene/?term=YE3050
YE3051	YE3051	purE	purE	3316400	3316924	+	phosphoribosylaminoimidazole carboxylase catalytic subunit PurE		gene	gene3001	http://www.ncbi.nlm.nih.gov/gene/?term=YE3051
YE3052	YE3052	purK	purK	3316921	3317985	+	phosphoribosylaminoimidazole carboxylase ATPase subunit	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway	gene	gene3002	http://www.ncbi.nlm.nih.gov/gene/?term=YE3052
YE3053	YE3053	ybbP	ybbP	3318139	3320565	-	permease		gene	gene3003	http://www.ncbi.nlm.nih.gov/gene/?term=YE3053
YE3054	YE3054	ybbA	ybbA	3320562	3321248	-	ABC transporter ATP-binding protein YbbA		gene	gene3004	http://www.ncbi.nlm.nih.gov/gene/?term=YE3054
YE3055	YE3055	apeA	apeA	3321216	3321854	+	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1		gene	gene3005	http://www.ncbi.nlm.nih.gov/gene/?term=YE3055
YE3056	YE3056	ybbO	ybbO	3321900	3322676	+	short chain dehydrogenase		gene	gene3006	http://www.ncbi.nlm.nih.gov/gene/?term=YE3056
YE3057	YE3057	ybbN	ybbN	3322748	3323617	+	thioredoxin		gene	gene3007	http://www.ncbi.nlm.nih.gov/gene/?term=YE3057
YE3058	YE3058		YE3058	3323815	3324729	+	hypothetical protein		gene	gene3008	http://www.ncbi.nlm.nih.gov/gene/?term=YE3058
YE3059	YE3059	ybbJ	ybbJ	3324732	3325181	+	hypothetical protein		gene	gene3009	http://www.ncbi.nlm.nih.gov/gene/?term=YE3059
YE3060	YE3060	cueR	cueR	3325227	3325646	-	regulatory protein		gene	gene3010	http://www.ncbi.nlm.nih.gov/gene/?term=YE3060
YE3061	YE3061	copA	copA	3325843	3328599	+	copper exporting ATPase		gene	gene3011	http://www.ncbi.nlm.nih.gov/gene/?term=YE3061
YE3062	YE3062		YE3062	3328681	3329490	+	hypothetical protein		gene	gene3012	http://www.ncbi.nlm.nih.gov/gene/?term=YE3062
YE3063	YE3063		YE3063	3329766	3330245	+	hypothetical protein		gene	gene3014	http://www.ncbi.nlm.nih.gov/gene/?term=YE3063
YE3064	YE3064		YE3064	3330944	3331963	+	transposase for IS1667	Similar to Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 5.7e-56%2C 45.93 38d in 344 aa and to Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 1.3e-49%2C 42.16 38d in 332 aa	gene	gene3015	http://www.ncbi.nlm.nih.gov/gene/?term=YE3064
YE3066	YE3066	ushA	ushA	3332365	3334017	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	catalyzes the degradation of periplasmic UDP-glucose to uridine%2C glucose-1-phosphate and inorganic phosphate%3B specific for uridine nucleotides	gene	gene3016	http://www.ncbi.nlm.nih.gov/gene/?term=YE3066
YE3067	YE3067	fsr	fsr	3334410	3335516	+	membrane efflux protein		gene	gene3017	http://www.ncbi.nlm.nih.gov/gene/?term=YE3067
YE3068	YE3068	rosB	rosB	3335753	3337444	+	cation:proton antiport protein	YbaL%3B member of the CPA-2 family of antiporters%3B uncharacterized protein	gene	gene3018	http://www.ncbi.nlm.nih.gov/gene/?term=YE3068
YE3069	YE3069	gsk	gsk	3337519	3338823	-	inosine-guanosine kinase		gene	gene3019	http://www.ncbi.nlm.nih.gov/gene/?term=YE3069
YE3070	YE3070	cld	cld	3339012	3340103	-	O-antigen chain length determinant		gene	gene3020	http://www.ncbi.nlm.nih.gov/gene/?term=YE3070
YE3071	YE3071	galE	galE	3340149	3341159	-	UDP-glucose 4-epimerase	Previously sequenced as Yersinia enterocolitica UDP-glucose 4-epimerase GalE SWALL:GALE_YEREN (SWALL:Q57301) (336 aa) fasta scores: E(): 4.3e-132%2C 99.7 id in 336 aa. Similar to Edwardsiella ictaluri UDP-galactose 4-epimerase GalE SWALL:Q937X4 (EMBL:AY057452) (338 aa) fasta scores: E(): 6.6e-87%2C64.88 38d in 336 aa	gene	gene3021	http://www.ncbi.nlm.nih.gov/gene/?term=YE3071
YE3072	YE3072	manB	manB	3341221	3342591	-	phosphomannomutase		gene	gene3022	http://www.ncbi.nlm.nih.gov/gene/?term=YE3072
YE3073	YE3073	manC	manC	3342603	3344000	-	mannose-1-phosphate guanylyltransferase		gene	gene3023	http://www.ncbi.nlm.nih.gov/gene/?term=YE3073
YE3074	YE3074	fcl	fcl	3344007	3344972	-	GDP-fucose synthetase	Similar to Escherichia coli GDP-fucose synthetase [includes: GDP-mannose-4-keto-6-d epimerase%3B GDP-4-keto-6-l-galactose reductase] Fcl or WcaG SWALL:FCL_ECOLI (SWALL:P32055) (321 aa) fasta scores: E(): 2.7e-96%2C 73.75 38d in 320 aa. Previously sequenced as Yersinia enterocolitica fucose synthetase WbcJ SWALL:Q56873 (EMBL:U46859) (321 aa) fasta scores: E(): 6.2e-127%2C 100 38d in 321 aa	gene	gene3024	http://www.ncbi.nlm.nih.gov/gene/?term=YE3074
YE3075	YE3075	gmd	gmd	3344978	3346096	-	GDP-mannose 4%2C6-dehydratase	Similar to Escherichia coli GDP-mannose 4%2C6-dehydratase Gmd SWALL:GM4D_ECOLI (SWALL:P32054) (373 aa) fasta scores: E(): 2.8e-119%2C 78.7 38d in 371 aa. Previously sequenced as Yersinia enterocolitica probable GDP-mannose 4%2C6-dehydratase SWALL:GM4D_YEREN (SWALL:Q56872) (372 aa) fasta scores: E(): 3.1e-145%2C99.19 38d in 372 aa	gene	gene3025	http://www.ncbi.nlm.nih.gov/gene/?term=YE3075
YE3076	YE3076	rfpB	rfpB	3346093	3347169	-	galactosyltransferase	Similar to Shigella dysenteriae galactosyltransferase RfpB SWALL:Q53452 (EMBL:S73325) (377 aa) fasta scores: E(): 2.7e-11%2C 27.13 38d in 387 aa. Previously sequenced as Yersinia enterocolitica RfbP protein WbcI or RfbP SWALL:Q56871 (EMBL:U46859) (358 aa) fasta scores: E(): 2e-145%2C 100 38d in 358 aa	gene	gene3026	http://www.ncbi.nlm.nih.gov/gene/?term=YE3076
YE3077	YE3077	wbcH	wbcH	3347156	3348004	-	glycosyl transferase	Previously sequenced as Yersinia enterocolitica WbcF protein SWALL:Q56870 (EMBL:U46859) (283 aa) fasta scores: E(): 1.7e-115%2C 99.64 38d in 283 aa. Similar to Bacteroides fragilis putative fucosyl transferase WcfB SWALL:Q9XDK2 (EMBL:AF048749) (287 aa) fasta scores: E(): 3.9e-09%2C 30.62 38d in 271 aa	gene	gene3027	http://www.ncbi.nlm.nih.gov/gene/?term=YE3077
YE3078	YE3078	wbcG	wbcG	3347994	3348860	-	glycosyltransferase	Previously sequenced as Yersinia enterocolitica putative WbcF glycosyltransferase WbcG SWALL:Q56869 (EMBL:U46859) (288 aa) fasta scores: E(): 1.5e-111%2C 99.65 id in 288 aa. N-terminus is similar to the N-terminal region of Vibrio cholerae sugar transferase SWALL:O34234 (EMBL:Y07786) (337 aa) fasta scores: E(): 1.1e-22%2C 40.19 id in 209 aa	gene	gene3028	http://www.ncbi.nlm.nih.gov/gene/?term=YE3078
YE3079	YE3079	wbcF	wbcF	3348866	3349834	-	hypothetical protein	Poor database matches. Previously sequenced as Yersinia enterocolitica WbcF protein SWALL:Q56868 (EMBL:U46859) (322 aa) fasta scores: E(): 2.7e-122%2C 99.37 id in 322 aa	gene	gene3029	http://www.ncbi.nlm.nih.gov/gene/?term=YE3079
YE3080	YE3080	wbcE	wbcE	3349831	3350850	-	hypothetical protein	Similar to Yersinia enterocolitica WbcE protein SWALL:Q56867 (EMBL:U46859) (331 aa) fasta scores: E(): 3.3e-116%2C 97.56 38d in 329 aa. Weakly similar to Lactobacillus delbrueckii EPS cluster protein EpsK SWALL:Q9F0B7 (EMBL:AF267127) (353 aa) fasta scores: E(): 0.002%2C 25 38d in 336 aa	gene	gene3030	http://www.ncbi.nlm.nih.gov/gene/?term=YE3080
YE3081	YE3081	wbcD	wbcD	3351033	3352022	-	6-deoxy-D-Gul transferase	Previously sequenced as Yersinia enterocolitica putative 6-deoxy-D-Gul transferase WbcD SWALL:Q56866 (EMBL:U46859) (336 aa) fasta scores: E(): 6.9e-127%2C 100 id in 317 aa. Similar to Salmonella typhimurium O antigen biosynthesis abequosyltransferase RfbV SWALL:RFBV_SALTY (SWALL:P26401) (333 aa) fasta scores: E(): 1.7e-07%2C 24.92 id in 337 aa. The N-terminus region of the CDS is extended in comparison to the previously sequenced Y. enterocolitica protein. Possible alternative translational start site. The C-terminus region of the CDS differs from the previously sequenced Y. enterocolitica protein	gene	gene3031	http://www.ncbi.nlm.nih.gov/gene/?term=YE3081
YE3082	YE3082	rfbX	rfbX	3352027	3353316	-	hypothetical protein	Previously sequenced as Yersinia enterocolitica putative O-unit flippase Wzx or RfbX SWALL:Q56865 (EMBL:U46859) (429 aa) fasta scores: E(): 7.1e-156%2C 98.6 id in 429 aa. Weakly similar to Staphylococcus aureus capsular polysaccharide biosynthesis protein CapF SWALL:CAPF_STAAU (SWALL:P39855) (396 aa) fasta scores: E(): 1.7e-08%2C 22.54 38d in 408 aa	gene	gene3032	http://www.ncbi.nlm.nih.gov/gene/?term=YE3082
YE3083	YE3083	wbcC	wbcC	3353349	3354353	-	glycosyltransferase	Similar to Salmonella typhimurium O antigen biosynthesis abequosyltransferase RfbV SWALL:RFBV_SALTY (SWALL:P26401) (333 aa) fasta scores: E(): 2e-52%2C 44.34 id in 327 aa. C-terminal region is identical to the previously sequenced Yersinia enterocolitica putative glycosyltransferase WbcC SWALL:Q56864 (EMBL:U46859) (283 aa) fasta scores: E(): 6.4e-114%2C 100 38d in 283 aa	gene	gene3033	http://www.ncbi.nlm.nih.gov/gene/?term=YE3083
YE3084	YE3084	prt	prt	3354419	3355297	-	paratose synthase		gene	gene3034	http://www.ncbi.nlm.nih.gov/gene/?term=YE3084
YE3085	YE3085	wbcA	wbcA	3355330	3355854	-	epimerase	Similar to Shigella flexneri dtdp-4-dehydrorhamnose 3%2C5-epimerase Rfbc or RmlC SWALL:RFBC_SHIFL (SWALL:P37780) (181 aa) fasta scores: E(): 4.6e-22%2C 36.78 38d in 174 aa. Previously sequenced as Yersinia enterocolitica putative 6-deoxy-Gul synthetase-1 WbcA SWALL:Q56862 (EMBL:U46859) (174 aa) fasta scores: E(): 6.6e-73%2C 99.42 38d in 174 aa	gene	gene3035	http://www.ncbi.nlm.nih.gov/gene/?term=YE3085
YE3086	YE3086	ddhB	ddhB	3355978	3357051	-	CDP-glucose 4%2C6-dehydratase	Previously sequenced to Yersinia enterocolitica CDP-glucose 4%2C6-dehydratase DdhB or RfbG SWALL:Q56861 (EMBL:U46859) (358 aa) fasta scores: E(): 6.2e-151%2C 99.16 id in 358 aa. Similar to Salmonella typhimurium CDP-glucose 4%2C6-dehydratase RfbG SWALL:RFBG_SALTY (SWALL:P26397) (359 aa) fasta scores: E(): 9.5e-109%2C69.66 38d in 356 aa.	gene	gene3036	http://www.ncbi.nlm.nih.gov/gene/?term=YE3086
YE3087	YE3087	ddhA	ddhA	3357057	3357842	-	glucose-1-phosphate cytidylyltransferase		gene	gene3037	http://www.ncbi.nlm.nih.gov/gene/?term=YE3087
YE3088	YE3088	hemH	hemH	3358610	3359578	-	ferrochelatase	protoheme ferro-lyase%3B catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme%3B involved in protoheme biosynthesis%3B in some organisms this protein is membrane-associated while in others it is cytosolic	gene	gene3038	http://www.ncbi.nlm.nih.gov/gene/?term=YE3088
YE3089	YE3089	adk	adk	3359696	3360340	-	adenylate kinase	essential enzyme that recycles AMP in active cells%3B converts ATP and AMP to two molecules of ADP	gene	gene3039	http://www.ncbi.nlm.nih.gov/gene/?term=YE3089
YE3090	YE3090	htpG	htpG	3360566	3362440	-	heat shock protein 90	molecular chaperone	gene	gene3040	http://www.ncbi.nlm.nih.gov/gene/?term=YE3090
YE3091	YE3091	recR	recR	3362773	3363378	-	recombination protein RecR	involved in a recombinational process of DNA repair%2C independent of the recBC complex	gene	gene3041	http://www.ncbi.nlm.nih.gov/gene/?term=YE3091
YE3092	YE3092		YE3092	3363378	3363710	-	hypothetical protein		gene	gene3042	http://www.ncbi.nlm.nih.gov/gene/?term=YE3092
YE3093	YE3093	dnaX	dnaX	3363766	3365736	-	DNA polymerase III subunits gamma and tau	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the tau chain serves as a scaffold to help in the dimerizaton of the alpha%2Cepsilon and theta core complex%3B the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA	gene	gene3043	http://www.ncbi.nlm.nih.gov/gene/?term=YE3093
YE3094	YE3094	apt	apt	3365820	3366383	-	adenine phosphoribosyltransferase	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis	gene	gene3044	http://www.ncbi.nlm.nih.gov/gene/?term=YE3094
YE3094A	YE3094A		YE3094A	3366599	3366979	-	hypothetical protein	Similar to Yersinia pestis putative membrane protein y1058 SWALL:Q8D149 (EMBL:AE013709) (126 aa) fasta scores: E(): 4.2e-46%2C 89.6 38d in 125 aa%2C Salmonella enterica subsp. enterica serovar Typhi Ty2 putative membrane protein YbaN SWALL:AAO69969 (EMBL:AE016842) (125 aa) fasta scores: E(): 4.9e-35%2C 73.59 38d in 125 aa and to Escherichia coli%2C Escherichia coli O157:H7%2C and Shigella flexneri hypothetical protein yban yban or b0468 or z0585 or ecs0521 or sf0413 SWALL:YBAN_ECOLI (SWALL:P45808) (125 aa) fasta scores: E(): 2.2e-33%2C 70.96 38d in 124 aa	gene	gene3045	http://www.ncbi.nlm.nih.gov/gene/?term=YE3094A
YE3095	YE3095	priC	priC	3367153	3367689	+	primosomal replication protein n''		gene	gene3046	http://www.ncbi.nlm.nih.gov/gene/?term=YE3095
YE3096	YE3096		YE3096	3367962	3368117	+	hypothetical protein		gene	gene3047	http://www.ncbi.nlm.nih.gov/gene/?term=YE3096
YE3097	YE3097	aefA	aefA	3368224	3371571	-	potassium efflux protein KefA	small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer%3B maintains cell turgor through accumulation and release of potassium%3B large protein class of MscS	gene	gene3048	http://www.ncbi.nlm.nih.gov/gene/?term=YE3097
YE3098	YE3098		YE3098	3371864	3372229	-	hypothetical protein		gene	gene3049	http://www.ncbi.nlm.nih.gov/gene/?term=YE3098
YE3099	YE3099	acrR	acrR	3372244	3372900	-	DNA-binding transcriptional repressor AcrR	regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine	gene	gene3050	http://www.ncbi.nlm.nih.gov/gene/?term=YE3099
YE3100	YE3100	acrA	acrA	3373045	3374232	+	multidrug efflux protein		gene	gene3051	http://www.ncbi.nlm.nih.gov/gene/?term=YE3100
YE3101	YE3101	acrB	acrB	3374249	3377401	+	multidrug efflux protein		gene	gene3052	http://www.ncbi.nlm.nih.gov/gene/?term=YE3101
YE3102	YE3102		YE3102	3377642	3378004	+	hypothetical protein	Similar to Escherichia coli hypothetical protein YhfY SWALL:YHFY_ECOLI (SWALL:P45551) (120 aa) fasta scores: E(): 1e-12%2C 43.47 38d in 115 aa%2C and to Pasteurella multocida hypothetical protein PM1058 SWALL:Q9CLZ1 (EMBL:AE006147) (126 aa) fasta scores: E(): 4.9e-08%2C 29.91 38d in 117 aa	gene	gene3053	http://www.ncbi.nlm.nih.gov/gene/?term=YE3102
YE3103	YE3103		YE3103	3378070	3379245	+	hypothetical protein	Similar to Escherichia coli hypothetical protein YhfX SWALL:YHFX_ECOLI (SWALL:P45550) (387 aa) fasta scores: E(): 1.5e-86%2C 57.4 38d in 385 aa%2C and to Bacillus halodurans hypothetical protein BH0591 SWALL:Q9KF94 (EMBL:AP001509) (386 aa) fasta scores: E(): 5.8e-46%2C 36.5 id in 389 aa	gene	gene3054	http://www.ncbi.nlm.nih.gov/gene/?term=YE3103
YE3104	YE3104		YE3104	3379242	3380507	+	mutase	Similar to Escherichia coli hypothetical protein YhfW SWALL:YHFW_ECOLI (SWALL:P45549) (408 aa) fasta scores: E(): 2e-81%2C 63.96 38d in 419 aa. Weakly similar to Bacillus subtilis phosphopentomutase Drm SWALL:DEOB_BACSU (SWALL:P46353) (394 aa) fasta scores: E(): 1.7e-09%2C 25.66 id in 413 aa	gene	gene3055	http://www.ncbi.nlm.nih.gov/gene/?term=YE3104
YE3105	YE3105		YE3105	3380563	3380928	+	hypothetical protein	Similar to Bacillus halodurans hypothetical protein BH0588 SWALL:Q9KF97 (EMBL:AP001509) (119 aa) fasta scores: E(): 7.3e-16%2C 46.15 38d in 117 aa%2C and to Escherichia coli hypothetical protein YhfU SWALL:YHFU_ECOLI (SWALL:P45547) (130 aa) fasta scores: E(): 7.3e-12%2C 40.7 38d in 113 aa	gene	gene3056	http://www.ncbi.nlm.nih.gov/gene/?term=YE3105
YE3106	YE3106		YE3106	3381038	3382321	+	hypothetical protein	Similar to Bacillus halodurans hypothetical protein BH0589 SWALL:Q9KF96 (EMBL:AP001509) (429 aa) fasta scores: E(): 1.1e-64%2C 42.29 38d in 428 aa%2C and to Escherichia coli hypothetical protein YhfT SWALL:YHFT_ECOLI (SWALL:P45546) (434 aa) fasta scores: E(): 1.1e-25%2C 37.13 38d in 439 aa	gene	gene3057	http://www.ncbi.nlm.nih.gov/gene/?term=YE3106
YE3107	YE3107	rpmE2	rpmE2	3382624	3382884	+	50S ribosomal protein L31	RpmE2%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster do not have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome	gene	gene3058	http://www.ncbi.nlm.nih.gov/gene/?term=YE3107
YE3108	YE3108	rpmJ	rpmJ	3382900	3383043	+	50S ribosomal protein L36	smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group do not have the motif	gene	gene3059	http://www.ncbi.nlm.nih.gov/gene/?term=YE3108
YE3109	YE3109		YE3109	3383171	3384049	-	periplasmic substrate-binding protein	Similar to Bacillus subtilis manganese-binding lipoprotein precursor MntA SWALL:MNTA_BACSU (SWALL:O34385) (306 aa) fasta scores: E(): 2.2e-26%2C 31.76 38d in 277 aa%2Cand to Listeria monocytogenes manganese-binding lipoprotein precursor LMO1847 SWALL:MNTA_LISMO (SWALL:Q8Y653) (310 aa) fasta scores: E(): 1.8e-30%2C 35.44 id in 268 aa	gene	gene3060	http://www.ncbi.nlm.nih.gov/gene/?term=YE3109
YE3110	YE3110		YE3110	3384095	3384952	-	ABC transporter membrane protein	Similar to Neisseria meningitidis putative ABC-transporter membrane protein NMA0790 SWALL:Q9JVL3 (EMBL:AL162754) (291 aa) fasta scores: E(): 2.5e-53%2C56.07 38d in 280 aa%2C and to Rhizobium loti ABC transporter%2C permease protein MLL8314 SWALL:Q983I6 (EMBL:AP003013) (291 aa) fasta scores: E(): 3.7e-53%2C58.18 38d in 275 aa	gene	gene3061	http://www.ncbi.nlm.nih.gov/gene/?term=YE3110
YE3111	YE3111		YE3111	3384949	3385677	-	ABC transporter ATP-binding protein	Similar to Bacillus subtilis manganese transport system ATP-binding protein MntB SWALL:MNTB_BACSU (SWALL:O34338) (250 aa) fasta scores: E(): 2.6e-18%2C 34.04 id in 235 aa%2C and to Rhizobium loti ABC transporter%2CATP-binding protein MLL8315 SWALL:Q983I5 (EMBL:AP003013) (272 aa) fasta scores: E(): 5.9e-29%2C 44.9 38d in 216 aa	gene	gene3062	http://www.ncbi.nlm.nih.gov/gene/?term=YE3111
YE3113	YE3113		YE3113	3386447	3386800	+	hypothetical protein		gene	gene3063	http://www.ncbi.nlm.nih.gov/gene/?term=YE3113
YE3114	YE3114		YE3114	3386958	3387326	+	hypothetical protein		gene	gene3064	http://www.ncbi.nlm.nih.gov/gene/?term=YE3114
YE3115	YE3115	ymoA	ymoA	3387372	3387575	+	hemolysin expression-modulating protein	with Hns involved in transcriptional regulation of hemolysin%3B non-specific DNA-binding protein which affects the production of multiple proteins	gene	gene3065	http://www.ncbi.nlm.nih.gov/gene/?term=YE3115
YE3116	YE3116		YE3116	3388337	3388726	+	6-O-methylguanine DNA methyltransferase family protein	Similar to the C-terminal region Yersinia pestis putative 6-O-methylguanine DNA methyltransferase family protein YPO3139 SWALL:Q8ZC83 (EMBL:AJ414155) (181 aa) fasta scores: E(): 7.9e-33%2C 68.65 38d in 134 aa. C-terminus is similar to the C-terminal region of Escherichia coli hypothetical protein YbaZ SWALL:YBAZ_ECOLI (SWALL:P75707) (129 aa) fasta scores: E(): 4.6e-28%2C 73.26 38d in 101 aa	gene	gene3067	http://www.ncbi.nlm.nih.gov/gene/?term=YE3116
YE3117	YE3117	ybaY	ybaY	3388778	3389308	-	lipoprotein		gene	gene3068	http://www.ncbi.nlm.nih.gov/gene/?term=YE3117
YE3118	YE3118	tesB	tesB	3389566	3390429	+	acyl-CoA thioesterase II		gene	gene3069	http://www.ncbi.nlm.nih.gov/gene/?term=YE3118
YE3119	YE3119	amtB	amtB	3390729	3392024	-	ammonium transporter		gene	gene3070	http://www.ncbi.nlm.nih.gov/gene/?term=YE3119
YE3120	YE3120	glnK	glnK	3392058	3392396	-	nitrogen regulatory protein P-II 2	indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA%3B functionally it is equivalent to protein P-II (GlnB)%2C but itsexpression is driven by the presence of uridylyltransferase%2C nitrogen regulator I%2C and the absence of ammonia.	gene	gene3071	http://www.ncbi.nlm.nih.gov/gene/?term=YE3120
YE3121	YE3121	mdl	mdl	3392827	3394605	-	multidrug transporter membrane\ATP-binding protein		gene	gene3072	http://www.ncbi.nlm.nih.gov/gene/?term=YE3121
YE3122	YE3122	mdl	mdl	3394598	3396364	-	multidrug transporter membrane\ATP-binding protein		gene	gene3073	http://www.ncbi.nlm.nih.gov/gene/?term=YE3122
YE3123	YE3123		YE3123	3396639	3397100	-	transcription regulator AsnC		gene	gene3074	http://www.ncbi.nlm.nih.gov/gene/?term=YE3123
YE3124	YE3124		YE3124	3397227	3398267	+	pyridoxal-phosphate dependent protein		gene	gene3075	http://www.ncbi.nlm.nih.gov/gene/?term=YE3124
YE3125	YE3125		YE3125	3398394	3399215	-	haloacid dehalogenase-like hydrolase		gene	gene3076	http://www.ncbi.nlm.nih.gov/gene/?term=YE3125
YE3126	YE3126		YE3126	3399319	3401022	+	hypothetical protein		gene	gene3077	http://www.ncbi.nlm.nih.gov/gene/?term=YE3126
YE3127	YE3127		YE3127	3401136	3401834	+	queuosine biosynthesis protein QueC	YbaX%3B catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)%2C as one of the early reactions of quenosine biosynthesis%3B quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn%2C Asp%2C Tyr%2C and His	gene	gene3078	http://www.ncbi.nlm.nih.gov/gene/?term=YE3127
YE3128	YE3128		YE3128	3401921	3402328	-	hypothetical protein		gene	gene3079	http://www.ncbi.nlm.nih.gov/gene/?term=YE3128
YE3129	YE3129		YE3129	3402575	3402997	-	hypothetical protein		gene	gene3080	http://www.ncbi.nlm.nih.gov/gene/?term=YE3129
YE3130	YE3130	ppiD	ppiD	3403136	3405022	-	peptidyl-prolyl cis-trans isomerase		gene	gene3081	http://www.ncbi.nlm.nih.gov/gene/?term=YE3130
YE3131	YE3131	hopD	hopD	3405222	3405494	-	transcriptional regulator HU subunit beta	histone-like DNA-binding protein	gene	gene3082	http://www.ncbi.nlm.nih.gov/gene/?term=YE3131
YE3132	YE3132	capR	capR	3405712	3408066	-	DNA-binding ATP-dependent protease La		gene	gene3083	http://www.ncbi.nlm.nih.gov/gene/?term=YE3132
YE3133	YE3133	clpX	clpX	3408261	3409532	-	ATP-dependent protease ATP-binding subunit ClpX	binds and unfolds substrates as part of the ClpXP protease	gene	gene3084	http://www.ncbi.nlm.nih.gov/gene/?term=YE3133
YE3134	YE3134	clpP	clpP	3409738	3410361	-	ATP-dependent Clp protease proteolytic subunit	hydrolyzes proteins to small peptides%3B with the ATPase subunits ClpA or ClpX%2C ClpP degrades specific substrates	gene	gene3085	http://www.ncbi.nlm.nih.gov/gene/?term=YE3134
YE3135	YE3135	tig	tig	3410818	3412122	-	trigger factor	Tig%3B RopA%3B peptidyl-prolyl cis/trans isomerase%3B promotes folding of newly synthesized proteins%3B binds ribosomal 50S subunit%3B forms a homodimer	gene	gene3086	http://www.ncbi.nlm.nih.gov/gene/?term=YE3135
YE3136	YE3136		YE3136	3412077	3412352	-	hypothetical protein	Poor database matches. N-terminus is similar to an internal region of Yersinia pestis hypothetical protein YPO3159 SWALL:Q8ZC63 (EMBL:AJ414155) (67 aa) fasta scores: E(): 4e-11%2C 94.11 38d in 34 aa. Doubtful CDS	gene	gene3087	http://www.ncbi.nlm.nih.gov/gene/?term=YE3136
YE3137	YE3137	bolA	bolA	3412538	3412870	-	transcriptional regulator BolA	positive transcriptional regulator of morphogenetic pathway%3B controlling several genes involved in oxidative stress%2C acid stress%2C heat shock%2C osmotic shock%2C and carbon-starvation stress	gene	gene3088	http://www.ncbi.nlm.nih.gov/gene/?term=YE3137
YE3138	YE3138	yajG	yajG	3413221	3413799	+	hypothetical protein		gene	gene3089	http://www.ncbi.nlm.nih.gov/gene/?term=YE3138
YE3139	YE3139	ampG	ampG	3413877	3415355	+	muropeptide transporter	in Escherichia coli this protein is a permease involved in peptidoglycan recycling%3B member of major facilitator superfamily%3B MFS%3B inner membrane protein	gene	gene3090	http://www.ncbi.nlm.nih.gov/gene/?term=YE3139
YE3140	YE3140	yfeN	yfeN	3415620	3416399	+	hypothetical protein		gene	gene3091	http://www.ncbi.nlm.nih.gov/gene/?term=YE3140
YE3141	YE3141	cyoA	cyoA	3416762	3417718	+	cytochrome o ubiquinol oxidase subunit II		gene	gene3092	http://www.ncbi.nlm.nih.gov/gene/?term=YE3141
YE3142	YE3142	cyoB	cyoB	3417723	3419714	+	cytochrome O ubiquinol oxidase subunit I		gene	gene3093	http://www.ncbi.nlm.nih.gov/gene/?term=YE3142
YE3143	YE3143	cyoC	cyoC	3419704	3420318	+	cytochrome o ubiquinol oxidase subunit III		gene	gene3094	http://www.ncbi.nlm.nih.gov/gene/?term=YE3143
YE3144	YE3144	cyoD	cyoD	3420378	3420665	+	cytochrome O ubiquinol oxidase subunit CyoD		gene	gene3095	http://www.ncbi.nlm.nih.gov/gene/?term=YE3144
YE3145	YE3145	cyoE	cyoE	3420676	3421566	+	protoheme IX farnesyltransferase	converts protoheme IX and farnesyl diphosphate to heme O	gene	gene3096	http://www.ncbi.nlm.nih.gov/gene/?term=YE3145
YE3146	YE3146	yajR	yajR	3421737	3423107	+	transporter		gene	gene3097	http://www.ncbi.nlm.nih.gov/gene/?term=YE3146
YE3147	YE3147		YE3147	3423161	3423652	-	nucleotide-binding protein	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ%3B the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription	gene	gene3098	http://www.ncbi.nlm.nih.gov/gene/?term=YE3147
YE3148	YE3148		YE3148	3423827	3424108	+	hypothetical protein	Doubtful CDS. N-terminus is similar to the C-terminal region of Escherichia coli hypothetical protein SWALL:P71284 (EMBL:U70214) (103 aa) fasta scores: E(): 0.0002%2C 62.79 38d in 43 aa. Possible gene remnant	gene	gene3099	http://www.ncbi.nlm.nih.gov/gene/?term=YE3148
YE3149	YE3149	apbA	apbA	3423990	3424901	+	2-dehydropantoate 2-reductase	ketopantoate reductase%3B catalyzes the NADPH reduction of ketopantoate to pantoate%3B functions in pantothenate (vitamin B5) biosynthesis	gene	gene3100	http://www.ncbi.nlm.nih.gov/gene/?term=YE3149
YE3150	YE3150	thiJ	thiJ	3424864	3425460	+	DJ-1 family protein		gene	gene3101	http://www.ncbi.nlm.nih.gov/gene/?term=YE3150
YE3151	YE3151	thiI	thiI	3425622	3427073	-	thiamine biosynthesis protein ThiI	Required for the synthesis of the thiazole moiety	gene	gene3102	http://www.ncbi.nlm.nih.gov/gene/?term=YE3151
YE3153	YE3153	xseB	xseB	3427349	3427603	+	exodeoxyribonuclease VII small subunit	catalyzes the bidirectional exonucleolytic cleavage of DNA	gene	gene3103	http://www.ncbi.nlm.nih.gov/gene/?term=YE3153
YE3154	YE3154	ispA	ispA	3427608	3428528	+	geranyltranstransferase		gene	gene3104	http://www.ncbi.nlm.nih.gov/gene/?term=YE3154
YE3155	YE3155	b0420	b0420	3428582	3430441	+	1-deoxy-D-xylulose-5-phosphate synthase	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate	gene	gene3105	http://www.ncbi.nlm.nih.gov/gene/?term=YE3155
YE3157	YE3157	pgpA	pgpA	3430950	3431447	-	phosphatidylglycerophosphatase A	hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate	gene	gene3106	http://www.ncbi.nlm.nih.gov/gene/?term=YE3157
YE3158	YE3158	thiL	thiL	3431440	3432429	-	thiamine monophosphate kinase	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP	gene	gene3107	http://www.ncbi.nlm.nih.gov/gene/?term=YE3158
YE3159	YE3159	nusB	nusB	3432509	3432925	-	transcription antitermination protein NusB	Regulates rRNA biosynthesis by transcriptional antitermination	gene	gene3108	http://www.ncbi.nlm.nih.gov/gene/?term=YE3159
YE3160	YE3160	ribH	ribH	3432951	3433421	-	6%2C7-dimethyl-8-ribityllumazine synthase	RibE%3B 6%2C7-diimethyl-8-ribityllumazine synthase%3B DMRL synthase%3B lumazine synthase%3B beta subunit of riboflavin synthase%3B condenses 5-amino-6-(1'-D)-ribityl-amino-2%2C4(1H%2C3H)-pyrimidinedione with L-3%2C4-dihydrohy-2-butanone-4-phosphate to generate 6%2C6-dimethyl-8-lumazine (DMRL)%3B riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12)%3B involved in the last steps of riboflavin biosynthesis%3B forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli%3B in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not	gene	gene3109	http://www.ncbi.nlm.nih.gov/gene/?term=YE3160
YE3161	YE3161	ribD	ribD	3433556	3434665	-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase	riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway%3B catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil	gene	gene3110	http://www.ncbi.nlm.nih.gov/gene/?term=YE3161
YE3162	YE3162	nrdR	nrdR	3434730	3435179	-	transcriptional regulator NrdR		gene	gene3111	http://www.ncbi.nlm.nih.gov/gene/?term=YE3162
YE3163	YE3163	secF	secF	3435444	3436412	-	preprotein translocase subunit SecF	forms a complex with SecD and YajC%3B SecDFyajC stimulates the proton motive force-driven protein translocation%3B seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane%3B in some organisms%2C such as Bacillus subtilis%2C SecD is fused to SecF	gene	gene3112	http://www.ncbi.nlm.nih.gov/gene/?term=YE3163
YE3164	YE3164	secD	secD	3436423	3438270	-	preprotein translocase subunit SecD	part of the preprotein secretory system%3B when complexed with proteins SecF and YajC%2C SecDFyajC stimulates the proton motive force-driven protein translocation%2C and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane	gene	gene3113	http://www.ncbi.nlm.nih.gov/gene/?term=YE3164
YE3165	YE3165	yajC	yajC	3438298	3438630	-	preprotein translocase subunit YajC	member of preprotein translocase%3B forms a heterotrimer with SecD and SecF%3B links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex	gene	gene3114	http://www.ncbi.nlm.nih.gov/gene/?term=YE3165
YE3166	YE3166	tgt	tgt	3438743	3439879	-	queuine tRNA-ribosyltransferase	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp%2C -Asn%2C -His and -Tyr)	gene	gene3115	http://www.ncbi.nlm.nih.gov/gene/?term=YE3166
YE3169	YE3169		YE3169	3440530	3440928	+	hypothetical protein	Similar to Salmonella typhimurium putative cytoplasmic protein STM0948 SWALL:Q8ZQE1 (EMBL:AE008740) (133 aa) fasta scores: E(): 6.6e-25%2C 59.37 38d in 128 aa. Also similar to Yersinia pestis hypothetical protein YPO2009a SWALL:Q8ZEY6 (EMBL:AJ414151) (104 aa) fasta scores: E(): 3.1e-30%2C 87.5 38d in 104 aa	gene	gene3116	http://www.ncbi.nlm.nih.gov/gene/?term=YE3169
YE3170	YE3170		YE3170	3440946	3441743	+	transposase for insertion element IS1669	Similar to Shigella sonnei insertion element IS600 hypothetical protein SWALL:YIS2_SHISO (SWALL:P16940) (272 aa) fasta scores: E(): 5.9e-25%2C 37.4 38d in 270 aa%2CPseudomonas aeruginosa hypothetical protein Pa0257 SWALL:Q9I6N2 (EMBL:AE004463) (263 aa) fasta scores: E(): 8.6e-70%2C 66.16 38d in 263 aa and to Porphyromonas gingivalis transposase Orf2 SWALL:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 9.8e-27%2C 37.26 38d in 271 aa	gene	gene3117	http://www.ncbi.nlm.nih.gov/gene/?term=YE3170
YE3172	YE3172	queA	queA	3442296	3443384	-	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step	gene	gene3118	http://www.ncbi.nlm.nih.gov/gene/?term=YE3172
YE3173	YE3173		YE3173	3443527	3444108	+	hypothetical protein		gene	gene3119	http://www.ncbi.nlm.nih.gov/gene/?term=YE3173
YE3174	YE3174	ahpC	ahpC	3444333	3444935	+	alkyl hydroperoxide reductase subunit C		gene	gene3120	http://www.ncbi.nlm.nih.gov/gene/?term=YE3174
YE3175	YE3175	ggt	ggt	3445681	3447444	+	gamma-glutamyltranspeptidase	Similar to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt SWALL:GGT_ECOLI (SWALL:P18956) (580 aa) fasta scores: E(): 9.7e-97%2C 50.09 id in 533 aa%2C and to Pseudomonas sp. gamma-glutamyltranspeptidase precursor Ggt SWALL:GGT_PSESP (SWALL:P36267) (575 aa) fasta scores: E(): 2.5e-118%2C58.03 38d in 591 aa	gene	gene3121	http://www.ncbi.nlm.nih.gov/gene/?term=YE3175
YE3176	YE3176		YE3176	3447512	3448192	-	short chain dehydrogenase		gene	gene3122	http://www.ncbi.nlm.nih.gov/gene/?term=YE3176
YE3177	YE3177	malZ	malZ	3448526	3450364	-	maltodextrin glucosidase		gene	gene3123	http://www.ncbi.nlm.nih.gov/gene/?term=YE3177
YE3178	YE3178	proY	proY	3450729	3452120	-	proline-specific permease	cryptic permease that may be involved in the transport of proline across the inner membrane%3B in Salmonella typhimurium%2C the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation	gene	gene3124	http://www.ncbi.nlm.nih.gov/gene/?term=YE3178
YE3179	YE3179	brnQ	brnQ	3452196	3453515	-	branched-chain amino acid transport system II carrier protein		gene	gene3125	http://www.ncbi.nlm.nih.gov/gene/?term=YE3179
YE3180	YE3180	pstS	pstS	3453883	3454857	-			gene	gene3126	http://www.ncbi.nlm.nih.gov/gene/?term=YE3180
YE3181	YE3181	phoR	phoR	3454879	3456195	-	phosphate regulon sensor protein	membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB	gene	gene3127	http://www.ncbi.nlm.nih.gov/gene/?term=YE3181
YE3182	YE3182	phoB	phoB	3456220	3456909	-	phosphate regulon transcriptional regulatory protein		gene	gene3128	http://www.ncbi.nlm.nih.gov/gene/?term=YE3182
YE3183	YE3183	sbcD	sbcD	3457179	3458417	+	exonuclease subunit SbcD	with SbcC cleaves DNA hairpin structure%2C also has 5' single-strand endonuclease activity	gene	gene3129	http://www.ncbi.nlm.nih.gov/gene/?term=YE3183
YE3184	YE3184	sbcC	sbcC	3458414	3462103	+	exonuclease		gene	gene3130	http://www.ncbi.nlm.nih.gov/gene/?term=YE3184
YE3185	YE3185		YE3185	3462393	3463307	-	fructokinase	catalyzes phosphorylation of fructose%3B cytosolic enzyme	gene	gene3131	http://www.ncbi.nlm.nih.gov/gene/?term=YE3185
YE3186	YE3186	rdgC	rdgC	3463646	3464557	+	recombination associated protein	Required for efficient pilin antigenic variation	gene	gene3132	http://www.ncbi.nlm.nih.gov/gene/?term=YE3186
YE3187	YE3187		YE3187	3464629	3464916	-	hypothetical protein		gene	gene3133	http://www.ncbi.nlm.nih.gov/gene/?term=YE3187
YE3188	YE3188	aroL	aroL	3465400	3465924	-	shikimate kinase	type II enzyme similar to type I but differentially regulated and with a lower Km%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis	gene	gene3134	http://www.ncbi.nlm.nih.gov/gene/?term=YE3188
YE3189	YE3189		YE3189	3466167	3468308	-	hydroxamate-type ferrisiderophore receptor		gene	gene3135	http://www.ncbi.nlm.nih.gov/gene/?term=YE3189
YE3190	YE3190		YE3190	3468295	3469413	-	hypothetical protein		gene	gene3136	http://www.ncbi.nlm.nih.gov/gene/?term=YE3190
YE3191	YE3191		YE3191	3469636	3470193	-	methyltransferase		gene	gene3137	http://www.ncbi.nlm.nih.gov/gene/?term=YE3191
YE3192	YE3192		YE3192	3470438	3470707	-	hypothetical protein	Similar to Yersinia pestis putative exported protein YPO3518 SWALL:Q8ZBA1 (EMBL:AJ414157) (87 aa) fasta scores: E(): 3.3e-06%2C 35.55 38d in 90 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi putative periplasmic protein STM3362 or STY3543 SWALL:Q8XEN2 (EMBL:AE008855) (88 aa) fasta scores: E(): 5.3e-06%2C 41.75 id in 91 aa	gene	gene3138	http://www.ncbi.nlm.nih.gov/gene/?term=YE3192
YE3193	YE3193		YE3193	3470920	3471690	-	hypothetical protein	Similar to Salmonella typhi putative methyltransferase STY0280 SWALL:Q8Z984 (EMBL:AL627266) (256 aa) fasta scores: E(): 5.8e-60%2C 63.92 38d in 255 aa%2Cand to Salmonella typhimurium putative methyltransferase in menaquinone/biotin biosynthesis STM0259 SWALL:Q8ZRM3 (EMBL:AE008706) (256 aa) fasta scores: E(): 8.9e-60%2C63.52 38d in 255 aa	gene	gene3139	http://www.ncbi.nlm.nih.gov/gene/?term=YE3193
YE3194	YE3194		YE3194	3471834	3472328	+	acetyltransferase (GNAT) family protein	Similar to Listeria monocytogenes hypothetical protein LMO0624 SWALL:Q8Y9A8 (EMBL:AL591976) (147 aa) fasta scores: E(): 6.9e-10%2C 32.46 38d in 154 aa%2C and to Bacillus subtilis YycN protein SWALL:O32293 (EMBL:Z99124) (156 aa) fasta scores: E(): 1.1e-07%2C 31.44 38d in 159 aa	gene	gene3140	http://www.ncbi.nlm.nih.gov/gene/?term=YE3194
YE3195	YE3195		YE3195	3472473	3472727	-	hypothetical protein		gene	gene3141	http://www.ncbi.nlm.nih.gov/gene/?term=YE3195
YE3196	YE3196		YE3196	3472856	3481480	-	cyclic beta 1-2 glucan synthetase	Similar to Brucella abortus cyclic beta 1-2 glucan synthetase Cgs SWALL:O85166 (EMBL:AF047823) (2831 aa) fasta scores: E(): 0%2C 43.84 38d in 2851 aa%2C and to Brucella melitensis cellobiose-phosphorylase BMEI1837 SWALL:Q8YEP1 (EMBL:AE009617) (2867 aa) fasta scores: E(): 0%2C 44.71 38d in 2905 aa	gene	gene3142	http://www.ncbi.nlm.nih.gov/gene/?term=YE3196
YE3197	YE3197		YE3197	3481855	3482604	-	hypothetical protein		gene	gene3143	http://www.ncbi.nlm.nih.gov/gene/?term=YE3197
YE3198	YE3198	aglB	aglB	3482808	3484130	-	6-phospho-alpha-glucosidase	Similar to Klebsiella pneumoniae 6-phospho-alpha-glucosidase aglB SWALL:AGLB_KLEPN (SWALL:Q9AGA6) (440 aa) fasta scores: E(): 2.6e-121%2C67.73 38d in 437 aa%2C and to Clostridium perfringens maltose-6'-phosphate glucosidase malh or cpe0199 SWALL:Q8XNY3 (EMBL:AP003185) (441 aa) fasta scores: E(): 2.5e-122%2C 68.03 38d in 438 aa	gene	gene3144	http://www.ncbi.nlm.nih.gov/gene/?term=YE3198
YE3199	YE3199	aglA	aglA	3484142	3485686	-	PTS system%2C alpha-glucoside-specific transporter subunit IIBC	Similar to Klebsiella pneumoniae PTS system%2Calpha-glucoside-specific IIBC component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 1.4e-114%2C 55.72 38d in 524 aa%2C and to Fusobacterium mortiferum PTS system%2C alpha-glucoside-specific IIBC component MalB SWALL:PTAB_FUSMR (SWALL:O06900) (526 aa) fasta scores: E(): 5.2e-109%2C 51.52 38d in 524 aa	gene	gene3145	http://www.ncbi.nlm.nih.gov/gene/?term=YE3199
YE3200	YE3200		YE3200	3485925	3486635	+	GntR family transcriptional regulator	Similar to Escherichia coli fatty acyl responsive regulator FarR SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 7.7e-23%2C 32.62 38d in 236 aa%2C and to Escherichia coli hypothetical transcriptional regulator YidP SWALL:YIDP_ECOLI (SWALL:P31453) (238 aa) fasta scores: E(): 9.8e-30%2C 37.02 38d in 235 aa	gene	gene3146	http://www.ncbi.nlm.nih.gov/gene/?term=YE3200
YE3201	YE3201	proA	proA	3486704	3487963	-	gamma-glutamyl phosphate reductase	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway	gene	gene3147	http://www.ncbi.nlm.nih.gov/gene/?term=YE3201
YE3202	YE3202	proB	proB	3487973	3489076	-	gamma-glutamyl kinase	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis	gene	gene3148	http://www.ncbi.nlm.nih.gov/gene/?term=YE3202
YE3203	YE3203	crl	crl	3489232	3489633	-	DNA-binding transcriptional regulator Crl	involved in the expression of csgBA which is involved in curli formation%3B interacts with sigmaS	gene	gene3149	http://www.ncbi.nlm.nih.gov/gene/?term=YE3203
YE3204	YE3204	frsA	frsA	3489693	3490940	-	fermentation/respiration switch protein	forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc%3B FrsA may promote fermentation	gene	gene3150	http://www.ncbi.nlm.nih.gov/gene/?term=YE3204
YE3205	YE3205	gpp	gpp	3491191	3491649	-	xanthine-guanine phosphoribosyltransferase	catalyzes the conversion of guanine%2C xanthine and%2C to a lesser extent%2C hypoxanthine to GMP%2C XMP and IMP%2C respectively	gene	gene3151	http://www.ncbi.nlm.nih.gov/gene/?term=YE3205
YE3206	YE3206	pepD	pepD	3491957	3493417	+	aminoacyl-histidine dipeptidase		gene	gene3152	http://www.ncbi.nlm.nih.gov/gene/?term=YE3206
YE3207	YE3207	dinP	dinP	3493491	3494549	-	DNA polymerase IV	involved in translesion DNA polymerization with beta clamp of polymerase III%3B belongs to Y family of polymerases%3B does not contain proofreading function	gene	gene3153	http://www.ncbi.nlm.nih.gov/gene/?term=YE3207
YE3208	YE3208		YE3208	3494652	3495044	-	hypothetical protein	Similar to Ralstonia solanacearum hypothetical protein Rsp1515 or Rs04792 SWALL:Q8XPX1 (EMBL:AL646085) (130 aa) fasta scores: E(): 1.7e-22%2C 48.81 38d in 127 aa and to Fusobacterium nucleatum translation initiation inhibitor Fn1973 SWALL:Q8RHN7 (EMBL:AE010499) (128 aa) fasta scores: E(): 2.4e-10%2C 34.64 38d in 127 aa	gene	gene3154	http://www.ncbi.nlm.nih.gov/gene/?term=YE3208
YE3209	YE3209		YE3209	3495044	3496012	-	hydroxy amino acid dehydratase	Similar to Prokaryotic and Eukaryotic hydroxy amino acid deaminases including: Escherichia coli%2C and Escherichia coli O157:H7 threonine dehydratase catabolic TdcB or b3117 or z4469 or ecs3997 SWALL:THD2_ECOLI (SWALL:P05792) (329 aa) fasta scores: E(): 4.3e-41%2C 39.62 id in 323 aa%2C Ralstonia solanacearum probable amino-acid dehydratase protein Rsp1516 or Rs04793 SWALL:Q8XPX0 (EMBL:AL646085) (323 aa) fasta scores: E(): 7.1e-85%2C70.21 38d in 319 aa and to Mus musculus serine racemase SrR SWALL:SRR_MOUSE (SWALL:Q9QZX7) (339 aa) fasta scores: E(): 1.5e-39%2C 39.56 38d in 321 aa	gene	gene3155	http://www.ncbi.nlm.nih.gov/gene/?term=YE3209
YE3210	YE3210		YE3210	3496015	3496647	-	hypothetical protein	Similar to Ralstonia solanacearum hypothetical protein Rsp1517 or Rs04794 SWALL:Q8XPW9 (EMBL:AL646085) (214 aa) fasta scores: E(): 2.1e-47%2C 66.5 38d in 209 aa and to Streptomyces coelicolor hypothetical protein Sco0822 or Scf43a.12C SWALL:Q9XAA3 (EMBL:AL096837) (226 aa) fasta scores: E(): 8.4e-13%2C 28.43 38d in 204 aa	gene	gene3156	http://www.ncbi.nlm.nih.gov/gene/?term=YE3210
YE3211	YE3211	ddlA	ddlA	3496761	3497861	-	D-alanine--D-alanine ligase	Similar to Escherichia coli%2C and Escherichia coli O157:H7 D-alanine--D-alanine ligase A DdlA or b0381 or z0477 or ecs0431 SWALL:DDLA_ECOLI (SWALL:P23844) (364 aa) fasta scores: E(): 3.2e-101%2C 69.78 38d in 364 aa and to Salmonella typhimurium%2C and Salmonella typhi D-alanine--D-alanine ligase A DdlA or stm0380 or sty0412 SWALL:DDLA_SALTY (SWALL:P15051) (363 aa) fasta scores: E(): 6.6e-101%2C 69.14 38d in 363 aa	gene	gene3157	http://www.ncbi.nlm.nih.gov/gene/?term=YE3211
YE3212	YE3212		YE3212	3498272	3499222	+	hypothetical protein		gene	gene3158	http://www.ncbi.nlm.nih.gov/gene/?term=YE3212
YE3213	YE3213		YE3213	3499362	3499589	-	hypothetical protein		gene	gene3159	http://www.ncbi.nlm.nih.gov/gene/?term=YE3213
YE3214	YE3214	apbE	apbE	3499602	3500624	-	thiamine biosynthesis lipoprotein		gene	gene3160	http://www.ncbi.nlm.nih.gov/gene/?term=YE3214
YE3215	YE3215	nqr6	nqr6	3500664	3501887	-	Na(+)-translocating NADH-quinone reductase subunit F	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm	gene	gene3161	http://www.ncbi.nlm.nih.gov/gene/?term=YE3215
YE3216	YE3216	nqr5	nqr5	3501903	3502499	-	Na(+)-translocating NADH-quinone reductase subunit E	Part of the NQR complex which consists of NqrA%2C NqrB%2C NqrC%2C NqrD%2C NqrE and NqrF%3B NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm%3B NqrE is probably involved in the second step%2C the conversion of ubisemiquinone to ubiquinol.	gene	gene3162	http://www.ncbi.nlm.nih.gov/gene/?term=YE3216
YE3217	YE3217	nqr4	nqr4	3502506	3503135	-	Na(+)-translocating NADH-quinone reductase subunit D	Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm	gene	gene3163	http://www.ncbi.nlm.nih.gov/gene/?term=YE3217
YE3218	YE3218	nqr3	nqr3	3503128	3503928	-	Na(+)-translocating NADH-quinone reductase subunit C	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm	gene	gene3164	http://www.ncbi.nlm.nih.gov/gene/?term=YE3218
YE3219	YE3219	nqr2	nqr2	3503918	3505159	-	Na(+)-translocating NADH-quinone reductase subunit B	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm	gene	gene3165	http://www.ncbi.nlm.nih.gov/gene/?term=YE3219
YE3220	YE3220	nqr1	nqr1	3505163	3506506	-	Na(+)-translocating NADH-quinone reductase subunit A	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm	gene	gene3166	http://www.ncbi.nlm.nih.gov/gene/?term=YE3220
YE3221	YE3221	yafK	yafK	3506998	3507747	+	hypothetical protein		gene	gene3167	http://www.ncbi.nlm.nih.gov/gene/?term=YE3221
YE3222	YE3222		YE3222	3507721	3508485	-	hypothetical protein		gene	gene3168	http://www.ncbi.nlm.nih.gov/gene/?term=YE3222
YE3223	YE3223	gmhA	gmhA	3508587	3509168	-	phosphoheptose isomerase	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate	gene	gene3169	http://www.ncbi.nlm.nih.gov/gene/?term=YE3223
YE3224	YE3224	fadE	fadE	3509424	3511871	+	acyl-CoA dehydrogenase	functions in fatty acid oxidation%3B converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA	gene	gene3170	http://www.ncbi.nlm.nih.gov/gene/?term=YE3224
YE3225	YE3225	rcsC	rcsC	3512249	3514108	-	accessory processing protein		gene	gene3171	http://www.ncbi.nlm.nih.gov/gene/?term=YE3225
YE3226	YE3226	rcsA	rcsA	3514175	3520372	-	adhesin		gene	gene3172	http://www.ncbi.nlm.nih.gov/gene/?term=YE3226
YE3227	YE3227	rcsB	rcsB	3520413	3522206	-	surface-exposed protein		gene	gene3173	http://www.ncbi.nlm.nih.gov/gene/?term=YE3227
YE3228	YE3228	mtnK	mtnK	3522963	3524162	-	methylthioribose kinase	phosphorylates methylthioribose to form methylthioribose-1-phosphate%3B involved in methionine salvage pathway	gene	gene3174	http://www.ncbi.nlm.nih.gov/gene/?term=YE3228
YE3230	YE3230	mntA	mntA	3524356	3525396	+	aldose-ketose isomerase	Similar to many proteins involved in the methionine salvage pathway that resemble translation initiation factors including: Thermotoga maritima putative translation initiation factor EIF-2b tm0911 SWALL:E2B_THEMA (SWALL:Q9X013) (343 aa) fasta scores: E(): 4.1e-45%2C 45.37 38d in 335 aa%2C and to Xylella fastidiosa putative translation initiation factor EIF-2b xf2553 SWALL:E2B_XYLFA (SWALL:Q9PAG5) (354 aa) fasta scores: E(): 3.6e-43%2C 47.14 38d in 333 aa	gene	gene3175	http://www.ncbi.nlm.nih.gov/gene/?term=YE3230
YE3231	YE3231	mntD	mntD	3525538	3526080	-	dioxygenase	Similar to many proteins involved in the methionine salvage pathway: Klebsiella oxytoca e-2/e-2' protein SWALL:Q9ZFE7 (EMBL:AF102514) (179 aa) fasta scores: E(): 4.3e-56%2C 75.84 38d in 178 aa%2C Pseudomonas aeruginosa probable oxidase pa1684 SWALL:Q9I341 (EMBL:AE004595) (181 aa) fasta scores: E(): 7.1e-40%2C 56.66 38d in 180 aa and to Xanthomonas campestris dioxygenase Xcc1819 SWALL:Q8P9N4 (EMBL:AE012284) (188 aa) fasta scores: E(): 3.2e-37%2C 52.8 id in 178 aa	gene	gene3176	http://www.ncbi.nlm.nih.gov/gene/?term=YE3231
YE3232	YE3232	mntC	mntC	3526077	3526766	-	bifunctional enolase/phosphatase	Similar to many proteins involved in the methionine salvage pathway: Klebsiella oxytoca bifunctional enolase-phosphatase E-1 enzyme MasA SWALL:Q48389 (EMBL:U00148) (229 aa) fasta scores: E(): 4.3e-52%2C 65.5 id in 229 aa and to Pseudomonas aeruginosa enolase-phosphatase E-1 MasA or Pa1685 SWALL:Q9I340 (EMBL:AE004595) (249 aa) fasta scores: E(): 3.1e-36%2C52.94 38d in 204 aa	gene	gene3177	http://www.ncbi.nlm.nih.gov/gene/?term=YE3232
YE3233	YE3233	mntB	mntB	3526763	3527452	-	methylthioribulose-1-phosphate dehydratase	catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway	gene	gene3178	http://www.ncbi.nlm.nih.gov/gene/?term=YE3233
YE3234	YE3234	mntE	mntE	3527612	3528772	+	aminotransferase	catalyzes the transfer of an amino moiety	gene	gene3179	http://www.ncbi.nlm.nih.gov/gene/?term=YE3234
YE3235	YE3235		YE3235	3528760	3529530	+	hypothetical protein	Similar to many proteins involved in the methionine salvage pathway%2C thought to be involved in a regulatory step in the pathway	gene	gene3180	http://www.ncbi.nlm.nih.gov/gene/?term=YE3235
YE3237	YE3237		YE3237	3530422	3531585	+	sugar transporter		gene	gene3181	http://www.ncbi.nlm.nih.gov/gene/?term=YE3237
YE3238	YE3238		YE3238	3531718	3532491	+	amino acid transporter		gene	gene3182	http://www.ncbi.nlm.nih.gov/gene/?term=YE3238
YE3239	YE3239		YE3239	3532488	3532829	+	hypothetical protein		gene	gene3183	http://www.ncbi.nlm.nih.gov/gene/?term=YE3239
YE3240	YE3240	emrR	emrR	3533001	3533513	+	transcriptional repressor MprA	DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux%3B negative regulator of the multidrug operon emrAB	gene	gene3184	http://www.ncbi.nlm.nih.gov/gene/?term=YE3240
YE3241	YE3241		YE3241	3533561	3535027	+	outer membrane efflux protein	Similar to many outer membrane efflux proteins including: Pseudomonas aeruginosa probable outer membrane protein Pa5158 SWALL:Q9HU26 (EMBL:AE004928) (492 aa) fasta scores: E(): 9.4e-39%2C 32.84 38d in 481 aa%2C and to Vibrio cholerae multidrug resistance protein%2C putative vc1409 SWALL:Q9KS51 (EMBL:AE004219) (484 aa) fasta scores: E(): 3.9e-38%2C 30.8 38d in 474 aa	gene	gene3185	http://www.ncbi.nlm.nih.gov/gene/?term=YE3241
YE3242	YE3242	emrA	emrA	3535043	3536215	+	multidrug resistance protein A		gene	gene3186	http://www.ncbi.nlm.nih.gov/gene/?term=YE3242
YE3243	YE3243	emrB	emrB	3536255	3537787	+	multidrug resistance protein B		gene	gene3187	http://www.ncbi.nlm.nih.gov/gene/?term=YE3243
YE3244	YE3244		YE3244	3537879	3538985	-	methyltransferase	Similar to many proposed methyltransferases: Yersinia pestis putative tRNA/rRNA methyltransferase Ypo3269 SWALL:Q8ZBW5 (EMBL:AJ414156) (388 aa) fasta scores: E(): 7.3e-112%2C 86.48 38d in 392 aa%2C Escherichia coli%2C and Escherichia coli O157:H7 hypothetical tRNA/rRNA methyltransferase yfif yfif or b2581 or z3865 or ecs3447 SWALL:YFIF_ECOLI (SWALL:P33635) (345 aa) fasta scores: E(): 3.3e-71%2C 62.59 38d in 377 aa and to Haemophilus influenzae hypothetical tRNA/rRNA methyltransferase Hi0424 SWALL:YFIF_HAEIN (SWALL:P44703) (351 aa) fasta scores: E(): 1.2e-31%2C 34.89 38d in 364 aa	gene	gene3188	http://www.ncbi.nlm.nih.gov/gene/?term=YE3244
YE3245	YE3245	trxC	trxC	3539206	3539646	+	thioredoxin 2		gene	gene3189	http://www.ncbi.nlm.nih.gov/gene/?term=YE3245
YE3246	YE3246		YE3246	3539801	3540550	+	hypothetical protein		gene	gene3190	http://www.ncbi.nlm.nih.gov/gene/?term=YE3246
YE3247	YE3247	yfiQ	yfiQ	3540603	3543245	+	acetyltransferase		gene	gene3191	http://www.ncbi.nlm.nih.gov/gene/?term=YE3247
YE3248	YE3248	pssA	pssA	3543420	3544778	+	phosphatidylserine synthase	catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine%3B bounds to the ribosome	gene	gene3192	http://www.ncbi.nlm.nih.gov/gene/?term=YE3248
YE3249	YE3249		YE3249	3544855	3545370	+	insertion element IS1664 protein	Similar to Yersinia pestis insertion element IS1661 DNA-binding protein YPO0996 SWALL:Q8ZHA8 (EMBL:AJ414145) (178 aa) fasta scores: E(): 7.5e-14%2C 36.51 38d in 178 aa%2Cand to Klebsiella pneumoniae OrfA SWALL:Q9AG22 (EMBL:AF345899) (173 aa) fasta scores: E(): 1.2e-18%2C40.22 38d in 174 aa	gene	gene3193	http://www.ncbi.nlm.nih.gov/gene/?term=YE3249
YE3250	YE3250		YE3250	3545406	3546224	+	transposase for IS1664 element	Similar to Yersinia pestis transposase for insertion sequence IS1661 SWALL:Q8XF80 (EMBL:AJ414160) (261 aa) fasta scores: E(): 5.9e-46%2C 50.19 38d in 257 aa. Also similar to Ralstonia solanacearum ISrsoII-transposase OrfB protein SWALL:Q8XX51 (EMBL:AL646069) (269 aa) fasta scores: E(): 7e-61%2C 58.11 38d in 265 aa%2C and to Escherichia coli putative transposase InsK for insertion sequence element IS150 SWALL:INSK_ECOLI (SWALL:P19769) (283 aa) fasta scores: E(): 7.1e-58%2C 53.43 38d in 262 aa	gene	gene3194	http://www.ncbi.nlm.nih.gov/gene/?term=YE3250
YE3251	YE3251		YE3251	3546281	3546622	+	hypothetical protein	Similar to Yersinia pestis KIM hypothetical protein Y0915 SWALL:AAM84497 (EMBL:AE013694) (113 aa) fasta scores: E(): 1.7e-39%2C 86.11 38d in 108 aa and to Yersinia pestis putative lipoprotein Ypo3274 SWALL:Q8ZBW0 (EMBL:AJ414156) (113 aa) fasta scores: E(): 1.7e-39%2C86.11 38d in 108 aa	gene	gene3195	http://www.ncbi.nlm.nih.gov/gene/?term=YE3251
YE3252	YE3252		YE3252	3552706	3553272	-	D%2CD-heptose 1%2C7-bisphosphate phosphatase	Converts the D-glycero-beta-D-manno-heptose 1%2C7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate	gene	gene3201	http://www.ncbi.nlm.nih.gov/gene/?term=YE3252
YE3253	YE3253	metN	metN	3553459	3554490	+	DL-methionine transporter ATP-binding subunit	part of the metNIQ transport system for methionine	gene	gene3202	http://www.ncbi.nlm.nih.gov/gene/?term=YE3253
YE3254	YE3254		YE3254	3554483	3555136	+	DL-methionine transporter permease	part of the MetNIQ methionine uptake system	gene	gene3203	http://www.ncbi.nlm.nih.gov/gene/?term=YE3254
YE3255	YE3255	metQ	metQ	3555331	3556146	+	DL-methionine transporter substrate-binding subunit		gene	gene3204	http://www.ncbi.nlm.nih.gov/gene/?term=YE3255
YE3256	YE3256	rcsF	rcsF	3556294	3556701	+	outer membrane lipoprotein		gene	gene3205	http://www.ncbi.nlm.nih.gov/gene/?term=YE3256
YE3257	YE3257		YE3257	3556698	3557405	+	hypothetical protein		gene	gene3206	http://www.ncbi.nlm.nih.gov/gene/?term=YE3257
YE3258	YE3258	drpA	drpA	3557513	3559231	+	prolyl-tRNA synthetase	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)	gene	gene3207	http://www.ncbi.nlm.nih.gov/gene/?term=YE3258
YE3259	YE3259	cutF	cutF	3559305	3559994	-	copper homeostasis and adhesion lipoprotein		gene	gene3208	http://www.ncbi.nlm.nih.gov/gene/?term=YE3259
YE3260	YE3260		YE3260	3560061	3560477	-	peptidyl-tRNA hydrolase domain-containing protein		gene	gene3209	http://www.ncbi.nlm.nih.gov/gene/?term=YE3260
YE3261	YE3261		YE3261	3560480	3561028	-	hypothetical protein		gene	gene3210	http://www.ncbi.nlm.nih.gov/gene/?term=YE3261
YE3262	YE3262		YE3262	3561266	3561466	+	hypothetical protein		gene	gene3211	http://www.ncbi.nlm.nih.gov/gene/?term=YE3262
YE3263	YE3263		YE3263	3561453	3561713	+	Rho-binding antiterminator	Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination	gene	gene3212	http://www.ncbi.nlm.nih.gov/gene/?term=YE3263
YE3264	YE3264		YE3264	3561800	3562114	-	cytochrome		gene	gene3213	http://www.ncbi.nlm.nih.gov/gene/?term=YE3264
YE3265	YE3265	tilS	tilS	3562290	3563675	-	tRNA(Ile)-lysidine synthetase	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU%3B ATP-dependent%3B responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase	gene	gene3214	http://www.ncbi.nlm.nih.gov/gene/?term=YE3265
YE3266	YE3266		YE3266	3563677	3564075	-	hypothetical protein		gene	gene3215	http://www.ncbi.nlm.nih.gov/gene/?term=YE3266
YE3267	YE3267	ldcC	ldcC	3564089	3566230	-	lysine decarboxylase	Similar to Escherichia coli lysine decarboxylase%2Cconstitutive LdcC or LdcH or ldc or b0186 SWALL:DCLZ_ECOLI (SWALL:P52095) (713 aa) fasta scores: E(): 0%2C 75.88 38d in 709 aa and to Salmonella typhimurium lysine decarboxylase 2%2C constitutive LdcC or stm0234 SWALL:Q8ZRN7 (EMBL:AE008705) (713 aa) fasta scores: E(): 0%2C 76.3 38d in 709 aa	gene	gene3216	http://www.ncbi.nlm.nih.gov/gene/?term=YE3267
YE3268	YE3268	accA	accA	3566535	3567494	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits%3B one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein	gene	gene3217	http://www.ncbi.nlm.nih.gov/gene/?term=YE3268
YE3269	YE3269	dnaE	dnaE	3567507	3571022	-	DNA polymerase III subunit alpha	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time%3B main replicative polymerase	gene	gene3218	http://www.ncbi.nlm.nih.gov/gene/?term=YE3269
YE3270	YE3270	rnhB	rnhB	3571100	3571696	-	ribonuclease HII	RNH2%3B RNase HII%3B binds manganese%3B endonuclease which specifically degrades the RNA of RNA-DNA hybrids	gene	gene3219	http://www.ncbi.nlm.nih.gov/gene/?term=YE3270
YE3271	YE3271	lpxB	lpxB	3571693	3572877	-	lipid-A-disaccharide synthase	catalyzes the formation of lipid A disaccharide from UDP-2%2C3-diacylglucosamine and 2%2C3-diacylglucosamine-1-phosphate%2C lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM	gene	gene3220	http://www.ncbi.nlm.nih.gov/gene/?term=YE3271
YE3272	YE3272	lpxA	lpxA	3572881	3573669	-	UDP-N-acetylglucosamine acyltransferase	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis	gene	gene3221	http://www.ncbi.nlm.nih.gov/gene/?term=YE3272
YE3273	YE3273	fabZ	fabZ	3573673	3574179	-	(3R)-hydroxymyristoyl-ACP dehydratase	in Pseudomonas aeruginosa this enzyme is a trimer of dimers%3B essential for membrane formation%3B performs third step of type II fatty acid biosynthesis%3B catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP	gene	gene3222	http://www.ncbi.nlm.nih.gov/gene/?term=YE3273
YE3274	YE3274	lpxD	lpxD	3574463	3575485	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis	gene	gene3223	http://www.ncbi.nlm.nih.gov/gene/?term=YE3274
YE3275	YE3275	ompH	ompH	3575489	3575986	-	periplasmic chaperone		gene	gene3224	http://www.ncbi.nlm.nih.gov/gene/?term=YE3275
YE3276	YE3276		YE3276	3576144	3578528	-	outer membrane protein assembly factor YaeT	part of a complex with YfgL%2C YfiO%2C and NlpB involved in outer membrane protein biosynthesis%3B involved in the assembly of outer membrane proteins	gene	gene3225	http://www.ncbi.nlm.nih.gov/gene/?term=YE3276
YE3277	YE3277		YE3277	3578565	3579920	-	zinc metallopeptidase RseP	catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response	gene	gene3226	http://www.ncbi.nlm.nih.gov/gene/?term=YE3277
YE3278	YE3278	cdsA	cdsA	3579949	3580797	-	CDP-diglyceride synthase	catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate	gene	gene3227	http://www.ncbi.nlm.nih.gov/gene/?term=YE3278
YE3279	YE3279	rth	rth	3580807	3581565	-	undecaprenyl pyrophosphate synthase	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate	gene	gene3228	http://www.ncbi.nlm.nih.gov/gene/?term=YE3279
YE3280	YE3280	b0173	b0173	3581791	3582987	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate	gene	gene3229	http://www.ncbi.nlm.nih.gov/gene/?term=YE3280
YE3281	YE3281	frr	frr	3583299	3583856	-	ribosome recycling factor	Rrf%3B Frr%3B ribosome-recycling factor%3B release factor 4%3B RF4%3B recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G%3B A GTPase-dependent process results in release of 50S from 70S%3B inhibited by release factor RF-1%3B essential for viability%3B structurally similar to tRNAs	gene	gene3230	http://www.ncbi.nlm.nih.gov/gene/?term=YE3281
YE3282	YE3282	pyrH	pyrH	3583989	3584735	-	uridylate kinase	Catalyzes the phosphorylation of UMP to UDP	gene	gene3231	http://www.ncbi.nlm.nih.gov/gene/?term=YE3282
YE3283	YE3283	tsf	tsf	3585002	3585859	-	elongation factor Ts	EF-Ts%3B functions during elongation stage of protein translation%3B forms a dimer%3B associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu	gene	gene3232	http://www.ncbi.nlm.nih.gov/gene/?term=YE3283
YE3284	YE3284	rpsB	rpsB	3585988	3586713	-	30S ribosomal protein S2	one of the last subunits in the assembly of the 30S subunit%3B absence of S2 does not inhibit assembly but results in an inactive subunit	gene	gene3233	http://www.ncbi.nlm.nih.gov/gene/?term=YE3284
YE3285	YE3285	ampM	ampM	3587074	3588033	+	methionine aminopeptidase	catalyzes the removal of N-terminal amino acids from peptides and arylamides%3B generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn%2C Fe%2C or Mn	gene	gene3235	http://www.ncbi.nlm.nih.gov/gene/?term=YE3285
YE3286	YE3286	glnD	glnD	3588094	3590772	+	PII uridylyl-transferase	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein	gene	gene3236	http://www.ncbi.nlm.nih.gov/gene/?term=YE3286
YE3287	YE3287	dapD	dapD	3590890	3591714	+	2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-carboxylate N-succinyltransferase	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway	gene	gene3237	http://www.ncbi.nlm.nih.gov/gene/?term=YE3287
YE3288	YE3288		YE3288	3591834	3592223	+	hypothetical protein		gene	gene3238	http://www.ncbi.nlm.nih.gov/gene/?term=YE3288
YE3289	YE3289		YE3289	3592375	3592824	-	flavodoxin	An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group	gene	gene3239	http://www.ncbi.nlm.nih.gov/gene/?term=YE3289
YE3290	YE3290		YE3290	3592852	3593625	-	tRNA pseudouridine synthase C	catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp	gene	gene3240	http://www.ncbi.nlm.nih.gov/gene/?term=YE3290
YE3291	YE3291		YE3291	3593625	3593957	-	hypothetical protein		gene	gene3241	http://www.ncbi.nlm.nih.gov/gene/?term=YE3291
YE3292	YE3292		YE3292	3594117	3594914	-	transposase for insertion element IS1669	Similar to Shigella sonnei insertion element IS600 hypothetical protein SWALL:YIS2_SHISO (SWALL:P16940) (272 aa) fasta scores: E(): 5.9e-25%2C 37.4 38d in 270 aa%2CPseudomonas aeruginosa hypothetical protein Pa0257 SWALL:Q9I6N2 (EMBL:AE004463) (263 aa) fasta scores: E(): 8.6e-70%2C 66.16 38d in 263 aa and to Porphyromonas gingivalis transposase Orf2 SWALL:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 9.8e-27%2C 37.26 38d in 271 aa	gene	gene3242	http://www.ncbi.nlm.nih.gov/gene/?term=YE3292
YE3293	YE3293		YE3293	3594932	3595330	-	hypothetical protein	Similar to Yersinia pestis hypothetical protein Ypo2009A SWALL:Q8ZEY6 (EMBL:AJ414151) (104 aa) fasta scores: E(): 7e-31%2C 87.5 38d in 104 aa and in part to Salmonella typhimurium putative cytoplasmic protein Stm0948 SWALL:Q8ZQE1 (EMBL:AE008740) (133 aa) fasta scores: E(): 3.9e-16%2C 53 38d in 100 aa	gene	gene3243	http://www.ncbi.nlm.nih.gov/gene/?term=YE3293
YE3294	YE3294	syd	syd	3595938	3596489	-	SecY interacting protein Syd	putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function	gene	gene3245	http://www.ncbi.nlm.nih.gov/gene/?term=YE3294
YE3295	YE3295	queF	queF	3596621	3597466	+	7-cyano-7-deazaguanine reductase	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis	gene	gene3246	http://www.ncbi.nlm.nih.gov/gene/?term=YE3295
YE3296	YE3296		YE3296	3597680	3599044	+	hypothetical protein		gene	gene3247	http://www.ncbi.nlm.nih.gov/gene/?term=YE3296
YE3297	YE3297	xni	xni	3599192	3599947	+	exonuclease IX	has 3'-5' exonuclease activity that preferentially acts on ssDNA%3B also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites%3B can remove 3' phosphoglycolate groups	gene	gene3248	http://www.ncbi.nlm.nih.gov/gene/?term=YE3297
YE3298	YE3298		YE3298	3600175	3601281	-	RNA 2'-O-ribose methyltransferase		gene	gene3249	http://www.ncbi.nlm.nih.gov/gene/?term=YE3298
YE3299	YE3299		YE3299	3601274	3601669	-	hypothetical protein		gene	gene3250	http://www.ncbi.nlm.nih.gov/gene/?term=YE3299
YE3300	YE3300	gcvA	gcvA	3601709	3602626	-	DNA-binding transcriptional activator GcvA	Glycine cleavage system transcriptional activator%3B activates the gcvTHP operon in the presence of glycine and represses the operon in its absence	gene	gene3251	http://www.ncbi.nlm.nih.gov/gene/?term=YE3300
YE3302	YE3302		YE3302	3603108	3603329	-	lipoprotein	Similar to Escherichia coli hypothetical lipoprotein YgdI precursor%2C or b2809 SWALL:YGDI_ECOLI (SWALL:Q46924) (75 aa) fasta scores: E(): 2.8e-19%2C 77.77 id in 72 aa%2Cand to Salmonella typhi possible lipoprotein Sty3150 SWALL:Q8Z409 (EMBL:AL627277) (72 aa) fasta scores: E(): 3.2e-14%2C 60.56 38d in 71 aa	gene	gene3253	http://www.ncbi.nlm.nih.gov/gene/?term=YE3302
YE3303	YE3303		YE3303	3603470	3604717	+	cysteine sulfinate desulfinase		gene	gene3254	http://www.ncbi.nlm.nih.gov/gene/?term=YE3303
YE3304	YE3304		YE3304	3604737	3605177	+	hypothetical protein		gene	gene3255	http://www.ncbi.nlm.nih.gov/gene/?term=YE3304
YE3305	YE3305		YE3305	3605181	3605990	-	hypothetical protein		gene	gene3256	http://www.ncbi.nlm.nih.gov/gene/?term=YE3305
YE3306	YE3306	mltA	mltA	3606105	3607277	-	murein transglycosylase A	membrane-bound%2C lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues	gene	gene3257	http://www.ncbi.nlm.nih.gov/gene/?term=YE3306
YE3307	YE3307		YE3307	3608095	3609345	-	N-acetylmuramoyl-L-alanine amidase AmiC		gene	gene3261	http://www.ncbi.nlm.nih.gov/gene/?term=YE3307
YE3308	YE3308	argA	argA	3609580	3610905	+	N-acetylglutamate synthase	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis	gene	gene3262	http://www.ncbi.nlm.nih.gov/gene/?term=YE3308
YE3309	YE3309	recD	recD	3610936	3612837	-	exonuclease V subunit alpha	helicase/nuclease%3B with RecBC catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity	gene	gene3263	http://www.ncbi.nlm.nih.gov/gene/?term=YE3309
YE3310	YE3310	recB	recB	3612834	3616463	-	exonuclease V subunit beta	helicase/nuclease%3B with RecCD catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity	gene	gene3264	http://www.ncbi.nlm.nih.gov/gene/?term=YE3310
YE3311	YE3311	ptr	ptr	3616460	3619351	-	protease III		gene	gene3265	http://www.ncbi.nlm.nih.gov/gene/?term=YE3311
YE3312	YE3312	recC	recC	3619451	3622822	-	exonuclease V subunit gamma	catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides%3B component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination	gene	gene3266	http://www.ncbi.nlm.nih.gov/gene/?term=YE3312
YE3313	YE3313		YE3313	3622973	3623359	-	hypothetical protein	Similar to many including: Yersinia pestis KIM hypothetical protein Y3167 SWALL:AAM86717 (EMBL:AE013918) (136 aa) fasta scores: E(): 2.8e-23%2C 60.74 38d in 107 aa%2CYersinia pestis putative prepilin peptidase dependent protein Ypo1017 SWALL:Q8ZH91 (EMBL:AJ414146) (136 aa) fasta scores: E(): 2.8e-23%2C 60.74 38d in 107 aa and to Escherichia coli O157:H7 prepilin peptidase dependent protein c ppdc or z4140 or ecs3680 SWALL:Q8X6M6 (EMBL:AE005511) (107 aa) fasta scores: E(): 2.3%2C 26.41 38d in 106 aa	gene	gene3267	http://www.ncbi.nlm.nih.gov/gene/?term=YE3313
YE3314	YE3314		YE3314	3623350	3623817	-	hypothetical protein		gene	gene3268	http://www.ncbi.nlm.nih.gov/gene/?term=YE3314
YE3315	YE3315		YE3315	3623814	3624365	-	hypothetical protein		gene	gene3269	http://www.ncbi.nlm.nih.gov/gene/?term=YE3315
YE3316	YE3316		YE3316	3624428	3624964	-	hypothetical protein	Similar to many Salmonella typhimurium prepilin peptidase dependent protein A%2C putative component in type IV pilin biogenesis PpdA or Stm3000 SWALL:Q8ZMB0 (EMBL:AE008837) (156 aa) fasta scores: E(): 1.8e-15%2C34.16 38d in 161 aa%2C Escherichia coli prepilin peptidase dependent protein A precursor ppda or b2826 SWALL:PPDA_ECOLI (SWALL:P33554) (156 aa) fasta scores: E(): 3.7e-13%2C 32.02 38d in 153 aa and to Vibrio vulnificus type IV pilin PilA SWALL:Q8VVV3 (EMBL:AF439854) (147 aa) fasta scores: E(): 0.21%2C 27.69 38d in 65 aa	gene	gene3270	http://www.ncbi.nlm.nih.gov/gene/?term=YE3316
YE3317	YE3317	thyA	thyA	3625196	3625990	-	thymidylate synthase	ThyA%3B catalyzes formation of dTMP and 7%2C8-dihydrofolate from 5%2C10-methylenetetrahydrofolate and dUMP%3B involved in deoxyribonucleotide biosynthesis%3B there are 2 copies in some Bacilli%2C one of which appears to be phage-derived	gene	gene3271	http://www.ncbi.nlm.nih.gov/gene/?term=YE3317
YE3318	YE3318	lgt	lgt	3625997	3626869	-	prolipoprotein diacylglyceryl transferase	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein	gene	gene3272	http://www.ncbi.nlm.nih.gov/gene/?term=YE3318
YE3319	YE3319	ptsP	ptsP	3626997	3629243	-	fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein	member of a second PTS chain involved in nitrogen metabolism%3B PtsP phosphorylates NPr	gene	gene3273	http://www.ncbi.nlm.nih.gov/gene/?term=YE3319
YE3320	YE3320		YE3320	3629256	3629783	-	dinucleoside polyphosphate hydrolase	hydrolyzes diadenosine polyphosphate	gene	gene3274	http://www.ncbi.nlm.nih.gov/gene/?term=YE3320
YE3322	YE3322	mutH	mutH	3630481	3631167	+	DNA mismatch repair protein	MutH%3B Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair	gene	gene3275	http://www.ncbi.nlm.nih.gov/gene/?term=YE3322
YE3323	YE3323		YE3323	3631264	3631980	+	integral membrane protein	Similar to many proteins of unknown function including: Salmonella typhimurium%2C and Salmonella typhi putative integral membrane transport protein YgdQ or Stm3006 or Sty3149 SWALL:Q8XES3 (EMBL:AE008838) (237 aa) fasta scores: E(): 8.2e-73%2C 84.18 38d in 234 aa%2CEscherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YgdQ or b2832 or z4150 or ecs3689 SWALL:YGDQ_ECOLI (SWALL:Q46931) (237 aa) fasta scores: E(): 2.7e-71%2C 83.33 38d in 234 aa and to Haemophilus influenzae hypothetical protein Hi0056 hi0056 SWALL:YGDQ_HAEIN (SWALL:P43932) (237 aa) fasta scores: E(): 5.2e-50%2C 60.68 38d in 234 aa	gene	gene3276	http://www.ncbi.nlm.nih.gov/gene/?term=YE3323
YE3324	YE3324	tas	tas	3632131	3633171	+	aldo-keto reductase	complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain%3B member of the aldo/keto reductase 2 family%3B crystal structure of purified Escherichia coli protein shows bound NADPH	gene	gene3277	http://www.ncbi.nlm.nih.gov/gene/?term=YE3324
YE3325	YE3325		YE3325	3633371	3634390	+	transposase for IS1667	Similar to Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 1.9e-56%2C 45.64 38d in 344 aa and to Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 3.8e-50%2C 42.16 38d in 332 aa	gene	gene3278	http://www.ncbi.nlm.nih.gov/gene/?term=YE3325
YE3326	YE3326	ygeD	ygeD	3634844	3636058	-	lysophospholipid transporter LplT		gene	gene3279	http://www.ncbi.nlm.nih.gov/gene/?term=YE3326
YE3327	YE3327	aas	aas	3636055	3638211	-	bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase	Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1	gene	gene3280	http://www.ncbi.nlm.nih.gov/gene/?term=YE3327
YE3328	YE3328		YE3328	3638730	3639759	+			gene	gene3282	http://www.ncbi.nlm.nih.gov/gene/?term=YE3328
YE3330	YE3330	bisC	bisC	3640131	3642389	-	biotin sulfoxide reductas2		gene	gene3283	http://www.ncbi.nlm.nih.gov/gene/?term=YE3330
YE3331	YE3331	galR	galR	3642679	3643749	+	DNA-binding transcriptional regulator GalR	controls transcription of galETKM	gene	gene3284	http://www.ncbi.nlm.nih.gov/gene/?term=YE3331
YE3332	YE3332	lysA	lysA	3643768	3645030	-	diaminopimelate decarboxylase	catalyzes the decarboxylation of diaminopimelate into lysine%3B pyridoxal phosphate(PLP)-binding	gene	gene3285	http://www.ncbi.nlm.nih.gov/gene/?term=YE3332
YE3333	YE3333	lysR	lysR	3645197	3646150	+	DNA-binding transcriptional regulator LysR	activates the transcription of the lysA gene encoding diaminopimelate decarboxylase	gene	gene3286	http://www.ncbi.nlm.nih.gov/gene/?term=YE3333
YE3334	YE3334		YE3334	3646147	3647307	-	sugar transport protein		gene	gene3287	http://www.ncbi.nlm.nih.gov/gene/?term=YE3334
YE3335	YE3335		YE3335	3647794	3648690	-	LysR family transcriptional regulator		gene	gene3288	http://www.ncbi.nlm.nih.gov/gene/?term=YE3335
YE3336	YE3336		YE3336	3648798	3649685	+	hypothetical protein		gene	gene3289	http://www.ncbi.nlm.nih.gov/gene/?term=YE3336
YE3337	YE3337		YE3337	3649748	3650392	+	hypothetical protein		gene	gene3290	http://www.ncbi.nlm.nih.gov/gene/?term=YE3337
YE3338	YE3338	cheD	cheD	3650397	3651938	-	methyl-accepting chemotaxis protein		gene	gene3291	http://www.ncbi.nlm.nih.gov/gene/?term=YE3338
YE3339	YE3339		YE3339	3652152	3652598	-	hypothetical protein		gene	gene3292	http://www.ncbi.nlm.nih.gov/gene/?term=YE3339
YE3340	YE3340		YE3340	3652607	3653266	-	reguatory protein	Similar to many proteins including: Yersinia pestis putative regulatory membrane protein Ypo0804 SWALL:Q8ZHT0 (EMBL:AJ414144) (238 aa) fasta scores: E(): 9.2e-35%2C 50.5 id in 200 aa and to Yersinia pestis KIM hypothetical Y3192 SWALL:AAM86742 (EMBL:AE013920) (234 aa) fasta scores: E(): 1.8e-33%2C 50 38d in 196 aa	gene	gene3293	http://www.ncbi.nlm.nih.gov/gene/?term=YE3340
YE3341	YE3341		YE3341	3653632	3654465	-	prepilin peptidase		gene	gene3294	http://www.ncbi.nlm.nih.gov/gene/?term=YE3341
YE3342	YE3342		YE3342	3654480	3654905	-	hypothetical protein	no significant database hits	gene	gene3295	http://www.ncbi.nlm.nih.gov/gene/?term=YE3342
YE3343	YE3343	outL	outL	3654920	3656116	-	general secretion pathway protein L		gene	gene3296	http://www.ncbi.nlm.nih.gov/gene/?term=YE3343
YE3344	YE3344	outK	outK	3656116	3657057	-	general secretion pathway protein K		gene	gene3297	http://www.ncbi.nlm.nih.gov/gene/?term=YE3344
YE3344A	YE3344A	outJ	outJ	3657072	3657665	-	general secretion pathway protein J	Similar to Aeromonas hydrophila general secretion pathway protein J precursor ExeJ SWALL:GSPJ_AERHY (SWALL:P31739) (207 aa) fasta scores: E(): 1.8e-11%2C 27.36 id in 190 aa%2C Yersinia pestis general secretion pathway protein J Ypo0810 SWALL:Q8ZHS4 (EMBL:AJ414144) (198 aa) fasta scores: E(): 2.9e-22%2C 35.35 38d in 198 aa%2C and to Erwinia carotovora general secretion pathway protein j precursor outJ SWALL:GSPJ_ERWCA (SWALL:P31589) (216 aa) fasta scores: E(): 1.7e-09%2C 24.6 38d in 191 aa	gene	gene3298	http://www.ncbi.nlm.nih.gov/gene/?term=YE3344A
YE3345	YE3345	outI	outI	3657658	3658020	-	general secretion pathway protein I		gene	gene3299	http://www.ncbi.nlm.nih.gov/gene/?term=YE3345
YE3346	YE3346	outG	outG	3658058	3658507	-	general secretion pathway protein G		gene	gene3300	http://www.ncbi.nlm.nih.gov/gene/?term=YE3346
YE3347	YE3347	outF	outF	3658527	3659735	-	general secretion pathway protein	Similar to Erwinia carotovora general secretion pathway protein F OutF SWALL:GSPF_ERWCA (SWALL:P31705) (408 aa) fasta scores: E(): 6.3e-52%2C 39.7 38d in 408 aa%2Cand to Escherichia coli putative general secretion pathway protein f hoff or hopf or b3327 SWALL:GSPF_ECOLI (SWALL:P41441) (398 aa) fasta scores: E(): 6.2e-50%2C 38.44 id in 398 aa	gene	gene3301	http://www.ncbi.nlm.nih.gov/gene/?term=YE3347
YE3348	YE3348	outE	outE	3659722	3661203	-	general secretion pathway protein E		gene	gene3302	http://www.ncbi.nlm.nih.gov/gene/?term=YE3348
YE3349	YE3349	outD	outD	3661224	3663170	-	general secretion pathway protein D		gene	gene3303	http://www.ncbi.nlm.nih.gov/gene/?term=YE3349
YE3350	YE3350	outC	outC	3663207	3663728	-	general secretion pathway protein C		gene	gene3304	http://www.ncbi.nlm.nih.gov/gene/?term=YE3350
YE3351	YE3351		YE3351	3663788	3664204	-	hypothetical protein		gene	gene3305	http://www.ncbi.nlm.nih.gov/gene/?term=YE3351
YE3352	YE3352		YE3352	3664902	3665657	-	carbonic anhydrase		gene	gene3306	http://www.ncbi.nlm.nih.gov/gene/?term=YE3352
YE3353	YE3353		YE3353	3665807	3666190	-	hypothetical protein	Weakly similar to mant including: Lactococcus lactis hypothetical protein YweE or Ll2171 SWALL:Q9CDP8 (EMBL:AE006446) (92 aa) fasta scores: E(): 1e-13%2C 48.91 id in 92 aa%2C Clostridium acetobutylicum predicted transcriptional regulator Cac2934 SWALL:Q97F21 (EMBL:AE007790) (112 aa) fasta scores: E(): 1.9e-13%2C45.36 38d in 97 aa and to Clostridium acetobutylicum predicted transcriptional regulator Cac2568 SWALL:Q97G06 (EMBL:AE007754) (117 aa) fasta scores: E(): 2.7e-13%2C44.08 38d in 93 aa	gene	gene3307	http://www.ncbi.nlm.nih.gov/gene/?term=YE3353
YE3354	YE3354		YE3354	3666293	3667042	+	short chain dehydrogenase	Similar to many including: Rhizobium loti glucose dehydrogenase Mlr5280 SWALL:Q98C63 (EMBL:AP003006) (250 aa) fasta scores: E(): 7e-30%2C 42 38d in 250 aa%2C Rhizobium meliloti putative dehydrogenasereductase%2C short-chain dehydrogenases/reductases protein Rb1165 or Smb20871 SWALL:Q92UG6 (EMBL:AL603646) (249 aa) fasta scores: E(): 4.9e-29%2C 41.29 38d in 247 aa and to Streptomyces coelicolor putative oxidoreductase Sco0111 or Scj11.40 SWALL:Q9RI66 (EMBL:AL109949) (250 aa) fasta scores: E(): 1.5e-26%2C 39.34 38d in 244 aa	gene	gene3308	http://www.ncbi.nlm.nih.gov/gene/?term=YE3354
YE3355	YE3355		YE3355	3667114	3667419	-	chaperone-modulator protein CbpM	with CpbA modulates the activity of the dnaK chaperone system%3B interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA	gene	gene3309	http://www.ncbi.nlm.nih.gov/gene/?term=YE3355
YE3356	YE3356		YE3356	3667426	3668379	-	curved DNA-binding protein CbpA	functional analog of DnaJ%3B co-chaperone with DnaK%2C molecular chaperone in an adaptive response to environmental stresses other than heat shock	gene	gene3310	http://www.ncbi.nlm.nih.gov/gene/?term=YE3356
YE3357	YE3357		YE3357	3668569	3669651	-	LacI-family regulatory protein		gene	gene3311	http://www.ncbi.nlm.nih.gov/gene/?term=YE3357
YE3358	YE3358		YE3358	3670044	3671351	+	sugar transporter		gene	gene3312	http://www.ncbi.nlm.nih.gov/gene/?term=YE3358
YE3359	YE3359		YE3359	3671378	3673753	+	glucosidase		gene	gene3313	http://www.ncbi.nlm.nih.gov/gene/?term=YE3359
YE3360	YE3360		YE3360	3673831	3674247	-	hypothetical protein	Weakly similar to several including: Rhizobium loti hypothetical protein Mlr5159 SWALL:Q98CG5 (EMBL:AP003005) (135 aa) fasta scores: E(): 0.013%2C 28.46 38d in 137 aa and to Clostridium acetobutylicum hypothetical protein Cac1073 SWALL:Q97K48 (EMBL:AE007622) (152 aa) fasta scores: E(): 0.38%2C 28.05 38d in 139 aa	gene	gene3314	http://www.ncbi.nlm.nih.gov/gene/?term=YE3360
YE3361	YE3361		YE3361	3674381	3674851	+	AsnC family transcriptional regulator	Similar to Pseudomonas putida LRP-family transcriptional regulators MdeR SWALL:O33467 (EMBL:D89015) (159 aa) fasta scores: E(): 5.1e-25%2C 43.87 38d in 155 aa%2CPseudomonas aeruginosa probable transcriptional regulator pa4508 SWALL:Q9HVR3 (EMBL:AE004864) (157 aa) fasta scores: E(): 7.7e-22%2C 41.78 38d in 146 aa and to Rhizobium loti transcriptional regulator Mll4830 SWALL:Q98D73 (EMBL:AP003005) (158 aa) fasta scores: E(): 6.3e-19%2C39.04 38d in 146 aa	gene	gene3315	http://www.ncbi.nlm.nih.gov/gene/?term=YE3361
YE3362	YE3362		YE3362	3675083	3676327	-	hypothetical protein	Similar to Escherichia coli hypothetical protein YdaM or b1341 SWALL:YDAM_ECOLI (SWALL:P77302) (430 aa) fasta scores: E(): 8.4e-90%2C 53.38 38d in 414 aa	gene	gene3316	http://www.ncbi.nlm.nih.gov/gene/?term=YE3362
YE3363	YE3363		YE3363	3676410	3676805	-	hypothetical protein	Similar to several proteins of undefined function including: Bacillus subtilis hypothetical protein YybH SWALL:YYBH_BACSU (SWALL:P37496) (129 aa) fasta scores: E(): 3.2e-20%2C 46.82 38d in 126 aa and to Pseudomonas aeruginosa hypothetical protein Pa1325 SWALL:Q9I419 (EMBL:AE004562) (135 aa) fasta scores: E(): 2.1e-16%2C44.96 38d in 129 aa	gene	gene3317	http://www.ncbi.nlm.nih.gov/gene/?term=YE3363
YE3364	YE3364	arsC	arsC	3677085	3677510	-	arsenate reductase	Similar to Escherichia coli arsenate reductase ArsC or ArsG or b3503 SWALL:ARSC_ECOLI (SWALL:P37311) (141 aa) fasta scores: E(): 1.6e-47%2C 85.81 38d in 141 aa and to Acidiphilium multivorum arsenate reductase ArsC SWALL:ARSC_ACIMU (SWALL:O50595) (141 aa) fasta scores: E(): 7.7e-47%2C 84.39 38d in 141 aa	gene	gene3318	http://www.ncbi.nlm.nih.gov/gene/?term=YE3364
YE3365	YE3365	arsB	arsB	3677524	3678813	-	arsenical pump membrane protein		gene	gene3319	http://www.ncbi.nlm.nih.gov/gene/?term=YE3365
YE3366	YE3366	arsR	arsR	3679048	3679398	-	DNA-binding transcriptional repressor ArsR	regulates the expression of of the arsRBC involved in resistance to arsenic	gene	gene3320	http://www.ncbi.nlm.nih.gov/gene/?term=YE3366
YE3367	YE3367		YE3367	3679643	3680785	-	hypothetical protein		gene	gene3321	http://www.ncbi.nlm.nih.gov/gene/?term=YE3367
YE3368	YE3368		YE3368	3681131	3681565	+	hypothetical protein	The predicted product of this CDS encompasses two CDS previously published from Yersinia pestis. The N-terminus%2C to codon 78%2C is similar to Yersinia pestis hypothetical protein Ypo0876 ypo0876 SWALL:Q8ZHL5 (EMBL:AJ414145) (78 aa) fasta scores: E(): 1.3e-24%2C 93.59 id in 78 aa%2C and to Yersinia pestis KIM hypothetical y3258 SWALL:AAM86808 (EMBL:AE013927) (78 aa) fasta scores: E(): 1.3e-24%2C 93.59 38d in 78 aa%2C and the C-terminus%2C from codon 118%2C is similar to Yersinia pestis KIM hypothetical y3259 SWALL:AAM86809 (EMBL:AE013927) (110 aa) fasta scores: E(): 4.7e-06%2C 53.12 38d in 96 aa%2C and to Yersinia pestis hypothetical protein Ypo0877 ypo0877 SWALL:Q8ZHL4 (EMBL:AJ414145) (110 aa) fasta scores: E(): 4.7e-06%2C53.12 38d in 96 aa.	gene	gene3322	http://www.ncbi.nlm.nih.gov/gene/?term=YE3368
YE3369	YE3369		YE3369	3681558	3681698	+	hypothetical protein	doubtful CDS	gene	gene3323	http://www.ncbi.nlm.nih.gov/gene/?term=YE3369
YE3370	YE3370		YE3370	3682136	3682477	-	inner membrane protein	doubtful CDS with no significant database hits	gene	gene3324	http://www.ncbi.nlm.nih.gov/gene/?term=YE3370
YE3371	YE3371		YE3371	3682624	3683301	-	hypothetical protein	no significant database hits	gene	gene3325	http://www.ncbi.nlm.nih.gov/gene/?term=YE3371
YE3373	YE3373		YE3373	3684016	3685632	-	integrase	Similar to several including: Salmonella typhi possible integrase Sty3193 SWALL:Q8Z3Y1 (EMBL:AL627277) (548 aa) fasta scores: E(): 8e-139%2C 70.76 38d in 537 aa and to Rhizobium meliloti putative integrase/resolvase recombinase protein R00600 or Smc02297 SWALL:Q92S32 (EMBL:AL591784) (513 aa) fasta scores: E(): 3e-10%2C 26.57 id in 380 aa	gene	gene3326	http://www.ncbi.nlm.nih.gov/gene/?term=YE3373
YE3374	YE3374	lysS	lysS	3686176	3687693	-	lysyl-tRNA synthetase	class II%3B LysRS2%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri%2C LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1	gene	gene3328	http://www.ncbi.nlm.nih.gov/gene/?term=YE3374
YE3376	YE3376	prfB	prfB	3687703	3688801	-	peptide chain release factor 2	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2%3B in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism%3B this protein is similar to release factor 1	gene	gene3329	http://www.ncbi.nlm.nih.gov/gene/?term=YE3376
YE3378	YE3378	recJ	recJ	3689253	3690986	-	ssDNA exonuclease RecJ	5'-3' single-stranded-DNA-specific exonuclease	gene	gene3330	http://www.ncbi.nlm.nih.gov/gene/?term=YE3378
YE3379	YE3379	dsbC	dsbC	3690993	3691709	-	thiol:disulfide interchange protein DsbC	DsbC%3B periplasmic protein with protein disulfide isomerase activity%3B this protein also shows disulfide oxidoreductase activity	gene	gene3331	http://www.ncbi.nlm.nih.gov/gene/?term=YE3379
YE3380	YE3380	xerD	xerD	3691758	3692657	-	site-specific tyrosine recombinase XerD	site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B XerD specifically exchanges the bottom strands%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs	gene	gene3332	http://www.ncbi.nlm.nih.gov/gene/?term=YE3380
YE3381	YE3381	fldB	fldB	3692763	3693284	+	flavodoxin FldB	An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic	gene	gene3333	http://www.ncbi.nlm.nih.gov/gene/?term=YE3381
YE3382	YE3382	creD	creD	3693343	3694764	-	hypothetical protein		gene	gene3334	http://www.ncbi.nlm.nih.gov/gene/?term=YE3382
YE3383	YE3383	creC	creC	3694856	3696283	-	sensory histidine kinase CreC	part of a two-component regulatory system with CreB or PhoB%3B involved in catabolic regulation	gene	gene3335	http://www.ncbi.nlm.nih.gov/gene/?term=YE3383
YE3384	YE3384	blrA	blrA	3696294	3696992	-	DNA-binding response regulator CreB	response regulator in two-component regulatory system with CreC%3B CreB protein is phosphorylated by sensor protein phospho-CreC%3B involved in catabolic regulation	gene	gene3336	http://www.ncbi.nlm.nih.gov/gene/?term=YE3384
YE3385	YE3385		YE3385	3696992	3697417	-	hypothetical protein		gene	gene3337	http://www.ncbi.nlm.nih.gov/gene/?term=YE3385
YE3386	YE3386		YE3386	3697398	3697664	-	hypothetical protein		gene	gene3338	http://www.ncbi.nlm.nih.gov/gene/?term=YE3386
YE3387	YE3387	ygfZ	ygfZ	3698059	3699051	+	global regulator	physiological role is not clear%3B not essential for growth but mutants grow poorly%3B mutations suppress hda null mutations%3B may be involved in regulation of ATP-DnaA levels%3B may also be involved in regulation of tRNA modifications%3B can bind folic acid and tetrahydrofolate%3B forms a three domain ring-like structure with a central channel%3B structurally similar to DMGO protein from A. globiformis%3B shows sequence similarity to yeast CAF17 transcriptional regulator	gene	gene3339	http://www.ncbi.nlm.nih.gov/gene/?term=YE3387
YE3388	YE3388		YE3388	3699105	3699677	-	hemolysin III		gene	gene3340	http://www.ncbi.nlm.nih.gov/gene/?term=YE3388
YE3389	YE3389		YE3389	3700019	3700621	+	hypothetical protein	Similar to several of undefined function e.g. Deinococcus radiodurans hypothetical protein Dr0704 SWALL:Q9RWG4 (EMBL:AE001927) (198 aa) fasta scores: E(): 5.8e-22%2C 39.08 38d in 197 aa and Halobacterium sp. ygl101w SWALL:O52019 (EMBL:AF016485) (203 aa) fasta scores: E(): 2.2e-06%2C 27.6 38d in 192 aa	gene	gene3341	http://www.ncbi.nlm.nih.gov/gene/?term=YE3389
YE3390	YE3390		YE3390	3700807	3701244	-	hypothetical protein		gene	gene3342	http://www.ncbi.nlm.nih.gov/gene/?term=YE3390
YE3391	YE3391	gcvP	gcvP	3701556	3704435	-	glycine dehydrogenase	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine	gene	gene3343	http://www.ncbi.nlm.nih.gov/gene/?term=YE3391
YE3392	YE3392	gcsH	gcsH	3704636	3705022	-	glycine cleavage system protein H	part of multienzyme complex composed of H%2C L%2C P%2C and T proteins which catalyzes oxidation of glycine to yield carbon dioxide%2C ammonia%2C 5%2C10-CH2-H4folate and a reduced pyridine nucleotide%3B protein H is involved in transfer of methylamine group from the P to T protein%3B covalently bound to a lipoyl cofactor	gene	gene3344	http://www.ncbi.nlm.nih.gov/gene/?term=YE3392
YE3393	YE3393	gcvT	gcvT	3705089	3706186	-	glycine cleavage system aminomethyltransferase T	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate%2C causing the release of ammonia and the generation of reduced GcvH protein	gene	gene3345	http://www.ncbi.nlm.nih.gov/gene/?term=YE3393
YE3394	YE3394	visC	visC	3706695	3707909	-	hypothetical protein		gene	gene3346	http://www.ncbi.nlm.nih.gov/gene/?term=YE3394
YE3395	YE3395	ubiH	ubiH	3707997	3709166	-	2-octaprenyl-6-methoxyphenyl hydroxylase	Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1%2C4-benzoquinone	gene	gene3347	http://www.ncbi.nlm.nih.gov/gene/?term=YE3395
YE3396	YE3396	pepP	pepP	3709170	3710483	-	proline aminopeptidase P II	exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue%3B substrate can be as short as a dipeptide	gene	gene3348	http://www.ncbi.nlm.nih.gov/gene/?term=YE3396
YE3397	YE3397		YE3397	3710538	3711116	-	hypothetical protein	the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers%3B function unknown	gene	gene3349	http://www.ncbi.nlm.nih.gov/gene/?term=YE3397
YE3398	YE3398		YE3398	3711500	3711829	+	Z-ring-associated protein		gene	gene3350	http://www.ncbi.nlm.nih.gov/gene/?term=YE3398
YE3399	YE3399		YE3399	3712268	3712864	+	5-formyltetrahydrofolate cyclo-ligase-family protein		gene	gene3352	http://www.ncbi.nlm.nih.gov/gene/?term=YE3399
YE3400	YE3400	serA	serA	3712960	3714201	-	D-3-phosphoglycerate dehydrogenase	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis%3B can also reduce alpha ketoglutarate to form 2-hydroxyglutarate	gene	gene3353	http://www.ncbi.nlm.nih.gov/gene/?term=YE3400
YE3401	YE3401	rpiA	rpiA	3714515	3715177	-	ribose-5-phosphate isomerase A	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway	gene	gene3354	http://www.ncbi.nlm.nih.gov/gene/?term=YE3401
YE3402	YE3402	iciA	iciA	3715398	3716291	+	chromosome replication initiation inhibitor protein	specific inhibitor of chromosomal initiation of replication in vitro%3B binds the three 13-mers in the origin (oriC) to block initiation of replication%3B also controls genes involved in arginine transport	gene	gene3355	http://www.ncbi.nlm.nih.gov/gene/?term=YE3402
YE3403	YE3403	yggE	yggE	3716293	3717048	-	hypothetical protein		gene	gene3356	http://www.ncbi.nlm.nih.gov/gene/?term=YE3403
YE3405	YE3405	yggA	yggA	3717259	3717876	-	arginine exporter protein	Involved in the export of arginine	gene	gene3357	http://www.ncbi.nlm.nih.gov/gene/?term=YE3405
YE3406	YE3406		YE3406	3718184	3719053	-	hypothetical protein		gene	gene3358	http://www.ncbi.nlm.nih.gov/gene/?term=YE3406
YE3407	YE3407		YE3407	3719323	3720792	-	transposase for IS1668	Similar to many including: Thermoanaerobacter tengcongensis transposase Tte0515 SWALL:Q8RCC1 (EMBL:AE013022) (499 aa) fasta scores: E(): 1.5e-76%2C46.62 38d in 444 aa and to Streptococcus pyogenes transposase SWALL:Q9FB00 (EMBL:AB030747) (428 aa) fasta scores: E(): 2.1e-58%2C 39.53 38d in 430 aa	gene	gene3359	http://www.ncbi.nlm.nih.gov/gene/?term=YE3407
YE3408	YE3408		YE3408	3721000	3722502	-	hypothetical protein	no significant database hits	gene	gene3360	http://www.ncbi.nlm.nih.gov/gene/?term=YE3408
YE3409	YE3409	traM	traM	3723246	3723641	-	conjugal transfer protein TraM	Similar to many plasmid transfer-related proteins: Escherichia coli TraM protein SWALL:TRM8_ECOLI (SWALL:P33788) (127 aa) fasta scores: E(): 3e-14%2C 42.18 id in 128 aa and Salmonella typhimurium%2C and Salmonella enterica subsp. enterica serovar Enteritidis conjugative transfer: mating signal tram or pslt073 SWALL:Q93GP1 (EMBL:AE006471) (126 aa) fasta scores: E(): 6.6e-10%2C38.21 38d in 123 aa	gene	gene3361	http://www.ncbi.nlm.nih.gov/gene/?term=YE3409
YE3411	YE3411		YE3411	3724129	3724566	+	hypothetical protein	Similar to many plasmid related proteins including: Escherichia coli plasmid x polypeptide YubQ or YgfA or x or 19 SWALL:X19F_ECOLI (SWALL:P47737) (169 aa) fasta scores: E(): 1.7e-32%2C 62.12 38d in 132 aa%2C Plasmid R100 protein X SWALL:BAA78847 (EMBL:AP000342) (169 aa) fasta scores: E(): 2e-32%2C 62.59 38d in 131 aa. Also similar to Escherichia coli PilT SWALL:Q93D61 (EMBL:AF399919) (175 aa) fasta scores: E(): 3.1e-18%2C 48.48 38d in 132 aa	gene	gene3362	http://www.ncbi.nlm.nih.gov/gene/?term=YE3411
YE3412	YE3412		YE3412	3724618	3726087	-	transposase for IS1668	Similar to many including: Thermoanaerobacter tengcongensis transposase Tte0515 SWALL:Q8RCC1 (EMBL:AE013022) (499 aa) fasta scores: E(): 3.7e-77%2C46.62 38d in 444 aa and to Streptococcus pyogenes transposase SWALL:Q9FB00 (EMBL:AB030747) (428 aa) fasta scores: E(): 4.8e-59%2C 39.76 38d in 430 aa	gene	gene3363	http://www.ncbi.nlm.nih.gov/gene/?term=YE3412
YE3413	YE3413	fba	fba	3726210	3727289	-	fructose-bisphosphate aldolase	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1%2C6%2C bisphosphate	gene	gene3364	http://www.ncbi.nlm.nih.gov/gene/?term=YE3413
YE3414	YE3414	pgk	pgk	3727548	3728711	-	phosphoglycerate kinase	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway	gene	gene3365	http://www.ncbi.nlm.nih.gov/gene/?term=YE3414
YE3415	YE3415	epd	epd	3728815	3729831	-	erythrose 4-phosphate dehydrogenase	NAD-dependent%3B catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate	gene	gene3366	http://www.ncbi.nlm.nih.gov/gene/?term=YE3415
YE3416	YE3416	tkt	tkt	3730171	3732165	-	transketolase	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase	gene	gene3367	http://www.ncbi.nlm.nih.gov/gene/?term=YE3416
YE3417	YE3417		YE3417	3732460	3733212	+	lipoprotein		gene	gene3368	http://www.ncbi.nlm.nih.gov/gene/?term=YE3417
YE3418	YE3418		YE3418	3733285	3733605	-	Rieske protein		gene	gene3369	http://www.ncbi.nlm.nih.gov/gene/?term=YE3418
YE3419	YE3419	speA	speA	3733933	3735912	-	arginine decarboxylase	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis	gene	gene3370	http://www.ncbi.nlm.nih.gov/gene/?term=YE3419
YE3421	YE3421	metK	metK	3736915	3738069	+	S-adenosylmethionine synthetase	catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase	gene	gene3371	http://www.ncbi.nlm.nih.gov/gene/?term=YE3421
YE3422	YE3422		YE3422	3738135	3738554	-	hypothetical protein	Similar to Ralstonia solanacearum probable transmembrane protein Rsc0437 or Rs03406 SWALL:Q8Y299 (EMBL:AL646059) (137 aa) fasta scores: E(): 1.6e-26%2C58.39 38d in 137 aa%2C and to uncultured proteobacterium conserved hypothetical protein ebac000-60d04.57 SWALL:AAM48689 (EMBL:AE008921) (141 aa) fasta scores: E(): 6.1e-21%2C 47.48 38d in 139 aa	gene	gene3372	http://www.ncbi.nlm.nih.gov/gene/?term=YE3422
YE3422A	YE3422A		YE3422A	3738571	3739002	-	hypothetical protein	Similar to many proteins of undefined function including: Pseudomonas putida YeeE/YedE family protein pp3295 SWALL:AAN68902 (EMBL:AE016786) (159 aa) fasta scores: E(): 1.2e-26%2C 53.14 38d in 143 aa and to Ralstonia solanacearum probable transmembrane protein rsc0438 or rs03407 SWALL:Q8Y298 (EMBL:AL646059) (144 aa) fasta scores: E(): 6.3e-23%2C 53.52 38d in 142 aa	gene	gene3373	http://www.ncbi.nlm.nih.gov/gene/?term=YE3422A
YE3423	YE3423		YE3423	3738999	3739304	-	transcription regulator ArsR	Similar to Vibrio cholerae transcriptional activator HlyU or vc0678 SWALL:HLYU_VIBCH (SWALL:P52695) (108 aa) fasta scores: E(): 6.1e-12%2C 47.25 38d in 91 aa%2Cand to Ralstonia solanacearum probable transcription regulator protein rsc1543 or rs05230 SWALL:Q8XZ61 (EMBL:AL646065) (121 aa) fasta scores: E(): 4.1e-20%2C59.37 38d in 96 aa	gene	gene3374	http://www.ncbi.nlm.nih.gov/gene/?term=YE3423
YE3424	YE3424		YE3424	3739455	3739967	+	hypothetical protein		gene	gene3375	http://www.ncbi.nlm.nih.gov/gene/?term=YE3424
YE3425	YE3425	endA	endA	3740064	3740771	+	endonuclease I		gene	gene3376	http://www.ncbi.nlm.nih.gov/gene/?term=YE3425
YE3426	YE3426		YE3426	3740817	3741548	+	16S ribosomal RNA methyltransferase RsmE	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA%3B cells lacking this function can grow%2C but are outcompeted by wild-type%3B SAM-dependent m(3)U1498 methyltransferase	gene	gene3377	http://www.ncbi.nlm.nih.gov/gene/?term=YE3426
YE3427	YE3427	gsh-II	gsh-II	3741574	3742527	+	glutathione synthetase	catalyzes the second step in the glutathione biosynthesis pathway%2C where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine %3D ADP + phosphate + glutathione	gene	gene3378	http://www.ncbi.nlm.nih.gov/gene/?term=YE3427
YE3428	YE3428		YE3428	3742839	3743402	+	hypothetical protein		gene	gene3379	http://www.ncbi.nlm.nih.gov/gene/?term=YE3428
YE3429	YE3429		YE3429	3743402	3743824	+	Holliday junction resolvase-like protein	similar to RuvC resolvase with substantial differences%3B NMR structural information suggests this protein is monomeric%3B unknown cellular function	gene	gene3380	http://www.ncbi.nlm.nih.gov/gene/?term=YE3429
YE3430	YE3430		YE3430	3744006	3744890	+	carbon-nitrogen hydrolase		gene	gene3381	http://www.ncbi.nlm.nih.gov/gene/?term=YE3430
YE3431	YE3431		YE3431	3744894	3746018	+	agmatine deiminase	catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis	gene	gene3382	http://www.ncbi.nlm.nih.gov/gene/?term=YE3431
YE3432	YE3432		YE3432	3746333	3747385	-	hypothetical protein		gene	gene3383	http://www.ncbi.nlm.nih.gov/gene/?term=YE3432
YE3433	YE3433		YE3433	3747486	3748181	+	hypothetical protein		gene	gene3384	http://www.ncbi.nlm.nih.gov/gene/?term=YE3433
YE3434	YE3434	proC	proC	3748217	3749038	+	pyrroline-5-carboxylate reductase	catalyzes the formation of L-proline from pyrroline-5-carboxylate	gene	gene3385	http://www.ncbi.nlm.nih.gov/gene/?term=YE3434
YE3435	YE3435	yggT	yggT	3749167	3749721	+	hypothetical protein		gene	gene3386	http://www.ncbi.nlm.nih.gov/gene/?term=YE3435
YE3436	YE3436		YE3436	3749718	3750008	+	hypothetical protein		gene	gene3387	http://www.ncbi.nlm.nih.gov/gene/?term=YE3436
YE3437	YE3437		YE3437	3750245	3750838	+	deoxyribonucleotide triphosphate pyrophosphatase	HAM1-like protein%3B Rec-dependent growth%3B RgdB%3B yggV%3B it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine	gene	gene3388	http://www.ncbi.nlm.nih.gov/gene/?term=YE3437
YE3438	YE3438		YE3438	3750831	3751961	+	coproporphyrinogen III oxidase	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III	gene	gene3389	http://www.ncbi.nlm.nih.gov/gene/?term=YE3438
YE3439	YE3439		YE3439	3752051	3752791	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty3262 SWALL:Q8Z3U3 (EMBL:AL627277) (239 aa) fasta scores: E(): 1.8e-50%2C 62.86 38d in 237 aa%2C and to Salmonella typhimurium putative periplasmic protein yggn or stm3107 SWALL:Q8ZM42 (EMBL:AE008842) (239 aa) fasta scores: E(): 3.5e-50%2C 62.44 38d in 237 aa	gene	gene3390	http://www.ncbi.nlm.nih.gov/gene/?term=YE3439
YE3440	YE3440		YE3440	3752894	3753796	-	glutaminase	catalyzes the formation of glutamate from glutamine	gene	gene3391	http://www.ncbi.nlm.nih.gov/gene/?term=YE3440
YE3441	YE3441		YE3441	3753950	3754276	-	hypothetical protein		gene	gene3392	http://www.ncbi.nlm.nih.gov/gene/?term=YE3441
YE3442	YE3442	trmB	trmB	3754276	3754995	-	tRNA (guanine-N(7)-)-methyltransferase	tRNA (guanine-N(7)-)-methyltransferase%3B catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine	gene	gene3393	http://www.ncbi.nlm.nih.gov/gene/?term=YE3442
YE3443	YE3443	mutB	mutB	3755473	3756561	+	adenine DNA glycosylase		gene	gene3394	http://www.ncbi.nlm.nih.gov/gene/?term=YE3443
YE3444	YE3444		YE3444	3756626	3756898	+	hypothetical protein		gene	gene3395	http://www.ncbi.nlm.nih.gov/gene/?term=YE3444
YE3445	YE3445	mltC	mltC	3757024	3758112	+	murein transglycosylase C	Murein hydrolase C%3B membrane-bound%3B lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues	gene	gene3396	http://www.ncbi.nlm.nih.gov/gene/?term=YE3445
YE3446	YE3446		YE3446	3758283	3759032	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein Pa3775 SWALL:Q9HXM0 (EMBL:AE004796) (260 aa) fasta scores: E(): 2.5e-36%2C 44.35 38d in 248 aa%2C and to Escherichia coli O157:H7 z5415 protein z5415 or ecs4801 SWALL:Q8X8E6 (EMBL:AE005619) (291 aa) fasta scores: E(): 9.4e-09%2C 24.58 38d in 240 aa	gene	gene3397	http://www.ncbi.nlm.nih.gov/gene/?term=YE3446
YE3447	YE3447	speC	speC	3759101	3761263	-	ornithine decarboxylase		gene	gene3398	http://www.ncbi.nlm.nih.gov/gene/?term=YE3447
YE3450	YE3450		YE3450	3762254	3763237	-	phage integrase		gene	gene3400	http://www.ncbi.nlm.nih.gov/gene/?term=YE3450
YE3451	YE3451		YE3451	3763267	3764463	-	hypothetical protein	Similar to Xanthomonas campestris pv. campestris str. ATCC 33913 conserved hypothetical protein xcc3121 SWALL:AAM42392 (EMBL:AE012427) (340 aa) fasta scores: E(): 6.5e-22%2C 35.71 38d in 252 aa%2C and to Salmonella typhi hypothetical protein Sty4665 sty4665 SWALL:Q8Z1C5 (EMBL:AL627283) (529 aa) fasta scores: E(): 8.2e-25%2C26.57 38d in 493 aa	gene	gene3401	http://www.ncbi.nlm.nih.gov/gene/?term=YE3451
YE3452	YE3452		YE3452	3764827	3765171	+	hypothetical protein		gene	gene3402	http://www.ncbi.nlm.nih.gov/gene/?term=YE3452
YE3453	YE3453		YE3453	3765220	3765561	-	hypothetical protein	Weakly similar to Rattus norvegicus von ebner's gland protein 1 precursor VegP1 or VegP SWALL:VEG1_RAT (SWALL:P20289) (177 aa) fasta scores: E(): 4%2C 26.54 38d in 113 aa	gene	gene3403	http://www.ncbi.nlm.nih.gov/gene/?term=YE3453
YE3454	YE3454		YE3454	3765558	3767960	-	hemolysin	Similar to the C-terminal regions of Yersinia pestis putative hemolysin ypo2490 SWALL:Q8ZDR6 (EMBL:AJ414152) (2535 aa) fasta scores: E(): 4.6e-143%2C67.09 38d in 702 aa%2C and to Yersinia pestis putative adhesin ypo0599 SWALL:Q8ZIA8 (EMBL:AJ414143) (3295 aa) fasta scores: E(): 3e-102%2C 60.92 38d in 563 aa	gene	gene3404	http://www.ncbi.nlm.nih.gov/gene/?term=YE3454
YE3455	YE3455		YE3455	3768387	3768686	+			gene	gene3405	http://www.ncbi.nlm.nih.gov/gene/?term=YE3455
YE3456	YE3456		YE3456	3768683	3768922	+			gene	gene3406	http://www.ncbi.nlm.nih.gov/gene/?term=YE3456
YE3457	YE3457		YE3457	3769251	3769835	+	hypothetical protein	Weakly similar to Salmonella typhimurium PilK protein SWALL:O07369 (EMBL:AB027308) (196 aa) fasta scores: E(): 0.0016%2C 25.28 38d in 178 aa%2C and to Shigella sonnei PilK protein SWALL:Q9Z499 (EMBL:AB021078) (197 aa) fasta scores: E(): 0.0004%2C 26.92 38d in 182 aa	gene	gene3407	http://www.ncbi.nlm.nih.gov/gene/?term=YE3457
YE3458	YE3458		YE3458	3769900	3770802	-	hypothetical protein	Similar to several proteins of undefined function including: Shigella sonnei YccB protein SWALL:Q9Z4E2 (EMBL:AB021078) (308 aa) fasta scores: E(): 1.9e-30%2C32.24 38d in 276 aa and to Salmonella typhimurium YfaB protein SWALL:BAB91618 (EMBL:AP005147) (308 aa) fasta scores: E(): 1.9e-30%2C 32.24 38d in 276 aa	gene	gene3408	http://www.ncbi.nlm.nih.gov/gene/?term=YE3458
YE3459	YE3459		YE3459	3770903	3771190	-	hypothetical protein	Weakly similar to several proteins of undefined function including: Escherichia coli hypothetical protein YkfI or b0245 SWALL:YKFI_ECOLI (SWALL:P77692) (113 aa) fasta scores: E(): 2e-08%2C 38.2 38d in 89 aa%2C and to Escherichia coli SWALL:Q9XB43 (EMBL:D83536) (108 aa) fasta scores: E(): 6.2e-08%2C 41.89 38d in 74 aa	gene	gene3409	http://www.ncbi.nlm.nih.gov/gene/?term=YE3459
YE3460	YE3460		YE3460	3771187	3772188	-	hypothetical protein	Similar in parts to several DNA primases including: Xylella fastidiosa DNA primase Xf2061 SWALL:Q9PBS8 (EMBL:AE004022) (1371 aa) fasta scores: E(): 1.9e-26%2C35.93 38d in 320 aa and to Escherichia coli DNA primase TraC SWALL:TRC5_ECOLI (SWALL:P27190) (1448 aa) fasta scores: E(): 1.6e-20%2C 35.71 38d in 322 aa	gene	gene3410	http://www.ncbi.nlm.nih.gov/gene/?term=YE3460
YE3461	YE3461		YE3461	3772593	3773480	-	phage integrase		gene	gene3411	http://www.ncbi.nlm.nih.gov/gene/?term=YE3461
YE3462	YE3462		YE3462	3775095	3776192	+	hypothetical protein	no significant database hits	gene	gene3412	http://www.ncbi.nlm.nih.gov/gene/?term=YE3462
YE3463	YE3463		YE3463	3776189	3777172	+	hypothetical protein	no significant database hits	gene	gene3413	http://www.ncbi.nlm.nih.gov/gene/?term=YE3463
YE3464	YE3464		YE3464	3777495	3777758	+	hypothetical protein	no significant database hits	gene	gene3414	http://www.ncbi.nlm.nih.gov/gene/?term=YE3464
YE3465	YE3465		YE3465	3777818	3779338	-	hypothetical protein	Similar to Salmonella typhi putative membrane protein Sty4579 SWALL:Q8Z1I6 (EMBL:AL627282) (501 aa) fasta scores: E(): 3.7e-95%2C 45.4 38d in 511 aa	gene	gene3415	http://www.ncbi.nlm.nih.gov/gene/?term=YE3465
YE3466	YE3466		YE3466	3779338	3780744	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty4577 SWALL:Q8Z1I8 (EMBL:AL627282) (476 aa) fasta scores: E(): 3.2e-103%2C 63.08 38d in 447 aa	gene	gene3416	http://www.ncbi.nlm.nih.gov/gene/?term=YE3466
YE3467	YE3467		YE3467	3780765	3781718	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty4576 SWALL:Q8Z1I9 (EMBL:AL627282) (322 aa) fasta scores: E(): 1.9e-86%2C 63.72 38d in 317 aa	gene	gene3417	http://www.ncbi.nlm.nih.gov/gene/?term=YE3467
YE3468	YE3468		YE3468	3781715	3782068	-	hypothetical protein	Similar in the C-terminus to Salmonella typhi hypothetical protein Sty4575 SWALL:Q8Z1J0 (EMBL:AL627282) (130 aa) fasta scores: E(): 1.7e-09%2C 53.62 38d in 69 aa	gene	gene3418	http://www.ncbi.nlm.nih.gov/gene/?term=YE3468
YE3472	YE3472	arsR2	arsR2	3783946	3784299	+	DNA-binding transcriptional repressor ArsR	regulates the expression of of the arsRBC involved in resistance to arsenic	gene	gene3419	http://www.ncbi.nlm.nih.gov/gene/?term=YE3472
YE3472A	YE3472A	arsD	arsD	3784346	3784708	+	arsenical resistance operon trans-acting repressor	Similar to Escherichia coli arsenical resistance operon trans-acting repressor ArsD SWALL:ARD1_ECOLI (SWALL:P46003) (120 aa) fasta scores: E(): 1.1e-43%2C 94.16 id in 120 aa and to Salmonella typhimurium ArsD protein SWALL:BAB91570 (EMBL:AP005147) (120 aa) fasta scores: E(): 5.1e-44%2C 95 38d in 120 aa	gene	gene3420	http://www.ncbi.nlm.nih.gov/gene/?term=YE3472A
YE3473	YE3473	arsA2	arsA2	3784726	3786477	+	arsenical pump-driving ATPase	Highly similar to Escherichia coli arsenical pump-driving ATPase ArsA SWALL:ARA1_ECOLI (SWALL:P08690) (583 aa) fasta scores: E(): 1.1e-198%2C 95.71 38d in 583 aa and to Acidiphilium multivorum arsenical pump-driving ATPase arsA SWALL:ARSA_ACIMU (SWALL:O50593) (583 aa) fasta scores: E(): 6.7e-181%2C 87.6 38d in 581 aa	gene	gene3421	http://www.ncbi.nlm.nih.gov/gene/?term=YE3473
YE3474	YE3474	arsB2	arsB2	3786526	3787815	+	arsenical pump membrane protein	Highly similar to Escherichia coli%2C and Escherichia coli O157:H7 arsenical pump membrane protein ArsB or arsf or b3502 or z4904 or ecs4374 SWALL:ARSB_ECOLI (SWALL:P37310) (429 aa) fasta scores: E(): 4.1e-145%2C91.84 38d in 429 aa%2C Salmonella typhimurium ArsB protein SWALL:BAB91586 (EMBL:AP005147) (429 aa) fasta scores: E(): 1.3e-151%2C 96.27 38d in 429 aa	gene	gene3422	http://www.ncbi.nlm.nih.gov/gene/?term=YE3474
YE3475	YE3475	arsC2	arsC2	3787828	3788253	+	arsenate reductase	Highly similar to Escherichia coli arsenate reductase ArsC SWALL:ARC1_ECOLI (SWALL:P08692) (141 aa) fasta scores: E(): 7.1e-51%2C 93.61 38d in 141 aa%2CAcidiphilium multivorum arsenate reductase ArsC SWALL:ARSC_ACIMU (SWALL:O50595) (141 aa) fasta scores: E(): 2.8e-50%2C 93.61 38d in 141 aa and to Yersinia enterocolitica arsenate reductase ArsC SWALL:ARSC_YEREN (SWALL:P74984) (141 aa) fasta scores: E(): 1.8e-46%2C 85.1 id in 141 aa	gene	gene3423	http://www.ncbi.nlm.nih.gov/gene/?term=YE3475
YE3476	YE3476	tpn1330	tpn1330	3788299	3789492	-	transposase for IS1330	Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:Q8RSF5 (EMBL:AJ344215) (397 aa) fasta scores: E(): 1.4e-162%2C99.49 38d in 397 aa. Also similar to Shigella flexneri%2Cand Shigella flexneri 2A IS10 orf S0034 or Cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 6.8e-113%2C 68.26 38d in 397 aa	gene	gene3424	http://www.ncbi.nlm.nih.gov/gene/?term=YE3476
YE3477	YE3477	arsH	arsH	3789694	3790404	-	arsenic resistance protein	Similar to Salmonella typhimurium ArsH arsenic resistance protein SWALL:BAB91594 (EMBL:AP005147) (216 aa) fasta scores: E(): 5.9e-81%2C 94.86 38d in 214 aa%2C and to Yersinia enterocolitica plasmid arsenic resistance protein ArsH SWALL:P74987 (EMBL:U58366) (232 aa) fasta scores: E(): 1.2e-70%2C 76.69 38d in 236 aa	gene	gene3425	http://www.ncbi.nlm.nih.gov/gene/?term=YE3477
YE3478	YE3478		YE3478	3790536	3790829	-	hypothetical protein	Similar to Salmonella typhimurium hypothetical YcjA protein SWALL:BAB91595 (EMBL:AP005147) (107 aa) fasta scores: E(): 1.9e-34%2C 96.87 38d in 96 aa and to Rhizobium loti hypothetical protein Mll2166 SWALL:Q98J04 (EMBL:AP002999) (106 aa) fasta scores: E(): 4.3e-16%2C51.57 38d in 95 aa	gene	gene3426	http://www.ncbi.nlm.nih.gov/gene/?term=YE3478
YE3479	YE3479		YE3479	3790936	3792069	+	membrane transport protein	Similar to several including: Salmonella typhimurium YdaA hypothetical protein SWALL:BAB91596 (EMBL:AP005147) (377 aa) fasta scores: E(): 3e-117%2C 86.73 id in 377 aa and to Methanosarcina acetivorans hypothetical protein Ma3941 SWALL:AAM07292 (EMBL:AE011105) (323 aa) fasta scores: E(): 1.1e-11%2C 25.73 38d in 373 aa	gene	gene3427	http://www.ncbi.nlm.nih.gov/gene/?term=YE3479
YE3480	YE3480	ccdB	ccdB	3792208	3792522	-	cytotoxic protein	Similar to several toxin/antitoxin system proteins including: Escherichia coli%2C and Escherichia coli O157:H7 cytotoxic protein CcdB or LetB or G SWALL:CCDB_ECOLI (SWALL:P05703) (101 aa) fasta scores: E(): 4e-06%2C 36.63 id in 101 aa%2C Escherichia coli O157:H7 putative toxin of gyrase inhibiting toxin-antitoxin system z0057 or ecs0053 SWALL:Q8XA16 (EMBL:AE005182) (104 aa) fasta scores: E(): 9.4e-22%2C 54.8 38d in 104 aa and to Salmonella enterica subsp. enterica serovar Choleraesuis LetB letB SWALL:Q9EUE9 (EMBL:AB040415) (101 aa) fasta scores: E(): 4e-06%2C 33.65 38d in 104 aa	gene	gene3428	http://www.ncbi.nlm.nih.gov/gene/?term=YE3480
YE3481	YE3481	ccdA	ccdA	3792525	3792761	-	gyrase inhibitor antitoxin	Similar to several toxin/antitoxin system proteins including: Escherichia coli%2C and Escherichia coli O157:H7 ccda protein CcdA or LetA or H SWALL:CCDA_ECOLI (SWALL:P05702) (72 aa) fasta scores: E(): 0.013%2C 26.47 38d in 68 aa and to Escherichia coli O157:H7 putative antitoxin of gyrase inhibiting toxin-antitoxin system Z0056 or ecs0052 SWALL:Q8XA17 (EMBL:AE005182) (77 aa) fasta scores: E(): 1.6e-15%2C 60.52 38d in 76 aa	gene	gene3429	http://www.ncbi.nlm.nih.gov/gene/?term=YE3481
YE3482	YE3482		YE3482	3793238	3795880	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty4573 SWALL:Q8Z1J2 (EMBL:AL627282) (807 aa) fasta scores: E(): 1.7e-214%2C 66.5 38d in 806 aa%2C and to Xanthomonas axonopodis hypothetical protein Xac2274 xac2274 SWALL:Q8PKA1 (EMBL:AE011864) (897 aa) fasta scores: E(): 2.9e-143%2C 52.44 38d in 900 aa	gene	gene3430	http://www.ncbi.nlm.nih.gov/gene/?term=YE3482
YE3483	YE3483		YE3483	3796042	3796446	-	lipoprotein	Similar in parts to Salmonella typhi putative lipoprotein Sty4571 SWALL:Q8Z1J4 (EMBL:AL627282) (147 aa) fasta scores: E(): 2.1e-25%2C 54.26 38d in 129 aa	gene	gene3431	http://www.ncbi.nlm.nih.gov/gene/?term=YE3483
YE3484	YE3484		YE3484	3796456	3797913	-	hypothetical protein	Similar to Salmonella typhi putative exported protein Sty4570 SWALL:Q8Z1J5 (EMBL:AL627282) (492 aa) fasta scores: E(): 2.5e-68%2C 50.9 38d in 495 aa and to Pseudomonas putida hypothetical 51.2 kDa protein SWALL:Q8VMJ2 (EMBL:AJ344068) (482 aa) fasta scores: E(): 4e-23%2C 39.8 38d in 412 aa	gene	gene3432	http://www.ncbi.nlm.nih.gov/gene/?term=YE3484
YE3485	YE3485		YE3485	3797961	3798827	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty4569 SWALL:Q8Z1J6 (EMBL:AL627282) (299 aa) fasta scores: E(): 1.8e-54%2C 58.36 38d in 269 aa and to Pseudomonas putida hypothetical 31.9 kDa protein SWALL:Q8VMJ1 (EMBL:AJ344068) (302 aa) fasta scores: E(): 1e-40%2C 47.9 38d in 263 aa	gene	gene3433	http://www.ncbi.nlm.nih.gov/gene/?term=YE3485
YE3486	YE3486		YE3486	3798824	3799477	-	hypothetical protein	Similar to Salmonella typhi possible exported protein Sty4568 SWALL:Q8Z1J7 (EMBL:AL627282) (217 aa) fasta scores: E(): 1.6e-64%2C 66.82 38d in 214 aa	gene	gene3434	http://www.ncbi.nlm.nih.gov/gene/?term=YE3486
YE3487	YE3487		YE3487	3799474	3799848	-	inner membrane protein	no significant database hits	gene	gene3435	http://www.ncbi.nlm.nih.gov/gene/?term=YE3487
YE3488	YE3488		YE3488	3799858	3800208	-	hypothetical protein	no significant database hits	gene	gene3436	http://www.ncbi.nlm.nih.gov/gene/?term=YE3488
YE3489	YE3489		YE3489	3800224	3800472	-	hypothetical protein	no significant database hits	gene	gene3437	http://www.ncbi.nlm.nih.gov/gene/?term=YE3489
YE3490	YE3490		YE3490	3800469	3800777	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty4564 SWALL:Q8Z1K0 (EMBL:AL627282) (90 aa) fasta scores: E(): 5.2e-16%2C 60.46 38d in 86 aa and to Pseudomonas putida putative transmembrane protein SWALL:Q8VMI7 (EMBL:AJ344068) (123 aa) fasta scores: E(): 3.8e-06%2C35.23 38d in 105 aa	gene	gene3438	http://www.ncbi.nlm.nih.gov/gene/?term=YE3490
YE3492	YE3492		YE3492	3801682	3802434	-	inner membrane protein	Similar to Salmonella typhi putative membrane protein Sty4563 SWALL:Q8Z1K1 (EMBL:AL627282) (252 aa) fasta scores: E(): 5.3e-51%2C 52.38 38d in 252 aa and to Pseudomonas putida hypothetical 27.8 kDa protein SWALL:Q8VMJ4 (EMBL:AJ344068) (249 aa) fasta scores: E(): 7.1e-32%2C 40.75 38d in 238 aa	gene	gene3439	http://www.ncbi.nlm.nih.gov/gene/?term=YE3492
YE3493	YE3493		YE3493	3802434	3804554	-	TraG-family protein	Similar to Salmonella typhi hypothetical protein Sty4562 SWALL:Q8Z1K2 (EMBL:AL627282) (696 aa) fasta scores: E(): 2.1e-205%2C 72.19 38d in 694 aa and to Pseudomonas putida hypothetical 80.3 kDa protein SWALL:Q8VMJ3 (EMBL:AJ344068) (718 aa) fasta scores: E(): 2.7e-167%2C 61.37 38d in 699 aa. Also weakly similar to several putative plasmid-related CDS: Proteus vulgaris DNA transfer orf202 SWALL:Q8L280 (EMBL:AP004237) (655 aa) fasta scores: E(): 2.7e-29%2C 26.24 38d in 682 aa	gene	gene3440	http://www.ncbi.nlm.nih.gov/gene/?term=YE3493
YE3494	YE3494		YE3494	3804740	3805234	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty4560 SWALL:Q8Z1K4 (EMBL:AL627282) (166 aa) fasta scores: E(): 2.7e-23%2C 46.42 38d in 168 aa	gene	gene3441	http://www.ncbi.nlm.nih.gov/gene/?term=YE3494
YE3494A	YE3494A		YE3494A	3805258	3805806	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty4559 SWALL:Q8Z1K5 (EMBL:AL627282) (183 aa) fasta scores: E(): 1.5e-42%2C 58.65 38d in 179 aa	gene	gene3442	http://www.ncbi.nlm.nih.gov/gene/?term=YE3494A
YE3495	YE3495		YE3495	3805875	3806642	-	hypothetical protein	Similar to Salmonella typhi putative exported protein Sty4558 SWALL:Q8Z1K6 (EMBL:AL627282) (246 aa) fasta scores: E(): 4e-47%2C 51.82 38d in 247 aa and to Xanthomonas axonopodis hypothetical protein Xac2255 xac2255 SWALL:Q8PKC0 (EMBL:AE011862) (254 aa) fasta scores: E(): 3.6e-25%2C 37.75 38d in 241 aa	gene	gene3443	http://www.ncbi.nlm.nih.gov/gene/?term=YE3495
YE3495A	YE3495A		YE3495A	3806785	3807132	-	hypothetical protein	doubtful CDS with no significant database hits	gene	gene3444	http://www.ncbi.nlm.nih.gov/gene/?term=YE3495A
YE3496	YE3496		YE3496	3807111	3807365	-	hypothetical protein	doubtful CDS with no significant database hits	gene	gene3445	http://www.ncbi.nlm.nih.gov/gene/?term=YE3496
YE3496A	YE3496A		YE3496A	3807520	3807876	+	DNA-binding protein	Similar to several putative transcriptional reguulators including: Serratia sp. 2-68 putative transcriptional regulator SWALL:AAM47490 (EMBL:AF468972) (88 aa) fasta scores: E(): 3e-14%2C 56.84 38d in 95 aa and to Vibrio cholerae transcriptional regulator%2C putative vc0176 SWALL:Q9KVH0 (EMBL:AE004108) (102 aa) fasta scores: E(): 5.2e-08%2C 54.93 38d in 71 aa	gene	gene3446	http://www.ncbi.nlm.nih.gov/gene/?term=YE3496A
YE3497	YE3497		YE3497	3808031	3808951	-	transposase	Similar to Escherichia coli hypothetical protein YhgA or b3411 SWALL:YHGA_ECOLI (SWALL:P31667) (292 aa) fasta scores: E(): 4.4e-57%2C 54.66 38d in 300 aa%2C Yersinia pestis hypothetical protein Ypo0076 SWALL:Q8ZJL8 (EMBL:AJ414141) (319 aa) fasta scores: E(): 8.7e-83%2C71.56 38d in 306 aa%2C Salmonella typhimurium putative transposase Stm0479 SWALL:Q8ZRA4 (EMBL:AE008718) (311 aa) fasta scores: E(): 1.8e-65%2C 56.27 38d in 311 aa and Escherichia coli hypothetical protein YadD or b0132 SWALL:YADD_ECOLI (SWALL:P31665) (300 aa) fasta scores: E(): 7.4e-54%2C 51.49 38d in 301 aa. Additional copies of this element are represented by YE1921%2C YE1924 and YE1655. There are also two partial sequences represented by YE1656 and YE1925.	gene	gene3447	http://www.ncbi.nlm.nih.gov/gene/?term=YE3497
YE3498	YE3498		YE3498	3809045	3810322	-	putative type IV pilus protein	Similar to Escherichia coli type IV pili shufflon protein b' SWALL:SHU4_ECOLI (SWALL:P09748) (444 aa) fasta scores: E(): 9.3e-29%2C 48.53 38d in 445 aa and to Salmonella typhi PilV or Sty4550 SWALL:O51801 (EMBL:AF000001) (435 aa) fasta scores: E(): 2.5e-71%2C 49 id in 400 aa	gene	gene3448	http://www.ncbi.nlm.nih.gov/gene/?term=YE3498
YE3499	YE3499		YE3499	3810326	3810994	-	type IV prepilin peptidase	Similar to many prepilin-like proteins including: Escherichia coli type 4 prepilin-like proteins leader peptide processing enzyme HofD or HopD or HopO or b3335 SWALL:LEP4_ECOLI (SWALL:P25960) (225 aa) fasta scores: E(): 0.00058%2C 28.07 38d in 228 aa%2C Salmonella typhimurium prepilin peptidase pilU SWALL:O07379 (EMBL:AB027308) (218 aa) fasta scores: E(): 4.7e-14%2C 30.39 38d in 227 aa and to Shigella sonnei prepilin peptidase PilU SWALL:Q9R2J4 (EMBL:AB021078) (218 aa) fasta scores: E(): 4.7e-14%2C30.39 38d in 227 aa	gene	gene3449	http://www.ncbi.nlm.nih.gov/gene/?term=YE3499
YE3500	YE3500		YE3500	3810991	3811578	-	type IV prepilin	Similar to Escherichia coli type IV prepilin PilS SWALL:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 1.1e-37%2C 56.61 38d in 189 aa and to Salmonella typhimurium type IV prepilin PilS SWALL:O07377 (EMBL:AB027308) (204 aa) fasta scores: E(): 2e-37%2C 56.08 38d in 189 aa	gene	gene3450	http://www.ncbi.nlm.nih.gov/gene/?term=YE3500
YE3501	YE3501		YE3501	3811593	3812702	-	type IV pilus integral membrane protein	Similar to Escherichia coli%2C and Salmonella typhimurium integral membrane protein PilR SWALL:O07376 (EMBL:AB021078) (365 aa) fasta scores: E(): 3.8e-71%2C50.82 38d in 364 aa%2C and to Escherichia coli PilR SWALL:Q93D63 (EMBL:AF399919) (365 aa) fasta scores: E(): 9.9e-30%2C 31.59 38d in 345 aa	gene	gene3451	http://www.ncbi.nlm.nih.gov/gene/?term=YE3501
YE3502	YE3502		YE3502	3812695	3814248	-	type IV pilus protein	Similar to Salmonella dublin nucleotide-binding type IV pili protein PilQ SWALL:Q9KHW5 (EMBL:AF247502) (571 aa) fasta scores: E(): 3.8e-99%2C 55.35 38d in 495 aa%2CSalmonella typhi PilQ or Sty4545 SWALL:Q9LBE1 (EMBL:AF000001) (571 aa) fasta scores: E(): 1.5e-98%2C54.94 38d in 495 aa%2C and to Escherichia coli PilQ protein SWALL:Q9F536 (EMBL:AP002527) (517 aa) fasta scores: E(): 4e-48%2C 41.3 38d in 523 aa	gene	gene3452	http://www.ncbi.nlm.nih.gov/gene/?term=YE3502
YE3502A	YE3502A		YE3502A	3814257	3814736	-	type IV pilus protein	Similar to Yersinia pseudotuberculosis PilP SWALL:AAL05420 (EMBL:AY047316) (164 aa) fasta scores: E(): 4.3e-34%2C 67.68 38d in 164 aa%2C Salmonella typhi%2C and Salmonella dublin PilP or Sty4544 SWALL:Q9RHF2 (EMBL:AF000001) (156 aa) fasta scores: E(): 1.6e-10%2C38.31 38d in 154 aa and to Escherichia coli PilP protein SWALL:Q9F535 (EMBL:AP002527) (171 aa) fasta scores: E(): 5.4e-05%2C 28.46 38d in 137 aa	gene	gene3453	http://www.ncbi.nlm.nih.gov/gene/?term=YE3502A
YE3503	YE3503		YE3503	3814723	3816030	-	type IV pilus protein	Similar to Salmonella dublin%2C and Salmonella typhi PilO SWALL:Q9K2P9 (EMBL:AF247502) (428 aa) fasta scores: E(): 1.8e-39%2C 33.41 38d in 428 aa%2C and to Escherichia coli PilO protein SWALL:Q9F534 (EMBL:AP002527) (440 aa) fasta scores: E(): 4.7e-14%2C 22.97 38d in 431 aa	gene	gene3454	http://www.ncbi.nlm.nih.gov/gene/?term=YE3503
YE3504	YE3504		YE3504	3816033	3817721	-	type IV pilus operon lipoprotein	Similar to Escherichia coli%2C and Salmonella typhimurium lipoprotein PilN SWALL:O07372 (EMBL:AB021078) (560 aa) fasta scores: E(): 4.1e-93%2C 49.81 38d in 550 aa.	gene	gene3455	http://www.ncbi.nlm.nih.gov/gene/?term=YE3504
YE3505	YE3505		YE3505	3817733	3818170	-	type IV pilus operon exported poprotein	Similar to Escherichia coli%2C and Salmonella typhimurium PilM protein SWALL:O07371 (EMBL:AB021078) (145 aa) fasta scores: E(): 6e-14%2C 33.56 38d in 146 aa and to Salmonella dublin PilM SWALL:Q9KHW6 (EMBL:AF247502) (139 aa) fasta scores: E(): 5.5e-12%2C 37.6 38d in 125 aa	gene	gene3456	http://www.ncbi.nlm.nih.gov/gene/?term=YE3505
YE3506	YE3506		YE3506	3818172	3819146	-	type IV pilus operon lipoprotein	Similar to Salmonella dublin%2C and Salmonella typhi PilL SWALL:Q9K334 (EMBL:AF247502) (414 aa) fasta scores: E(): 7e-34%2C 44.33 38d in 406 aa and to Shigella sonnei lipoprotein PilL SWALL:Q9R2J1 (EMBL:AB021078) (355 aa) fasta scores: E(): 9.2e-19%2C 33.12 38d in 320 aa	gene	gene3457	http://www.ncbi.nlm.nih.gov/gene/?term=YE3506
YE3507	YE3507		YE3507	3819341	3819772	-	hypothetical protein	Similar to several proteins of undefined function including: Ralstonia solanacearum SWALL:O82963 (EMBL:AB015669) (143 aa) fasta scores: E(): 5.4e-22%2C43.44 38d in 145 aa%2C and to Synechocystis sp. hypothetical protein Sll1692 SWALL:P73707 (EMBL:D90908) (145 aa) fasta scores: E(): 9.2e-20%2C 44.44 38d in 135 aa	gene	gene3458	http://www.ncbi.nlm.nih.gov/gene/?term=YE3507
YE3508	YE3508		YE3508	3819884	3820132	-	hypothetical protein	no significant database hits	gene	gene3459	http://www.ncbi.nlm.nih.gov/gene/?term=YE3508
YE3509	YE3509		YE3509	3820501	3821043	-	hypothetical protein	Similar in parts to Salmonella typhi hypothetical protein Sty4534 SWALL:Q8Z1L5 (EMBL:AL627282) (149 aa) fasta scores: E(): 1.2e-35%2C 62.23 38d in 143 aa and to Xylella fastidiosa hypothetical protein Xf1761 SWALL:Q9PCL7 (EMBL:AE003998) (375 aa) fasta scores: E(): 2.1e-10%2C 34.78 38d in 138 aa	gene	gene3460	http://www.ncbi.nlm.nih.gov/gene/?term=YE3509
YE3510	YE3510		YE3510	3821333	3822091	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty4529 SWALL:Q8Z1L6 (EMBL:AL627282) (259 aa) fasta scores: E(): 6.8e-36%2C 46.38 38d in 235 aa and to Xylella fastidiosa hypothetical protein Xf1780 SWALL:Q9PCJ9 (EMBL:AE004000) (249 aa) fasta scores: E(): 5.1e-10%2C30.55 38d in 216 aa	gene	gene3461	http://www.ncbi.nlm.nih.gov/gene/?term=YE3510
YE3511	YE3511		YE3511	3822260	3823462	-	hypothetical protein	Similar in parts to Salmonella typhi hypothetical protein Sty4528 SWALL:Q8Z1L7 (EMBL:AL627282) (447 aa) fasta scores: E(): 1.5e-49%2C 46.48 38d in 398 aa and to Xylella fastidiosa hypothetical protein Xf1781 SWALL:Q9PCJ8 (EMBL:AE004000) (418 aa) fasta scores: E(): 2e-26%2C 31.94 38d in 360 aa	gene	gene3462	http://www.ncbi.nlm.nih.gov/gene/?term=YE3511
YE3512	YE3512		YE3512	3823568	3824137	-	hypothetical protein		gene	gene3463	http://www.ncbi.nlm.nih.gov/gene/?term=YE3512
YE3513	YE3513		YE3513	3824134	3825720	-	ATP/GTP-binding protein	Similar to Salmonella typhi hypothetical protein Sty4523 SWALL:Q8Z1M1 (EMBL:AL627282) (599 aa) fasta scores: E(): 7.5e-68%2C 45.22 38d in 597 aa and to Xylella fastidiosa hypothetical protein Xf1784 SWALL:Q9PCJ5 (EMBL:AE004000) (253 aa) fasta scores: E(): 9.3e-32%2C45.77 38d in 225 aa	gene	gene3464	http://www.ncbi.nlm.nih.gov/gene/?term=YE3513
YE3514	YE3514	dnaB2	dnaB2	3825720	3827087	-	DNA helicase	Similar to Escherichia coli replicative DNA helicase DnaB or GroP or GrpA or b4052 SWALL:DNAB_ECOLI (SWALL:P03005) (471 aa) fasta scores: E(): 2.7e-83%2C 53.44 id in 436 aa%2C Salmonella typhi DNA helicase Sty4522 SWALL:Q8Z1M2 (EMBL:AL627282) (454 aa) fasta scores: E(): 9.6e-92%2C 54.6 38d in 445 aa and to Salmonella typhimurium%2Cand Salmonella typhi replicative DNA helicase DnaB or Stm4246 or sty4442 SWALL:DNAB_SALTY (SWALL:P10338) (471 aa) fasta scores: E(): 4.9e-83%2C 53.65 38d in 438 aa	gene	gene3465	http://www.ncbi.nlm.nih.gov/gene/?term=YE3514
YE3515	YE3515		YE3515	3827080	3827961	-	hypothetical protein	Similar to Xylella fastidiosa chromosome partitioning related protein Xf1785 SWALL:Q9PCJ4 (EMBL:AE004000) (291 aa) fasta scores: E(): 2.2e-29%2C42.04 38d in 283 aa and in part to Salmonella typhi hypothetical protein Sty4521 SWALL:Q8Z1M3 (EMBL:AL627282) (344 aa) fasta scores: E(): 2.6e-67%2C 59.45 38d in 291 aa	gene	gene3466	http://www.ncbi.nlm.nih.gov/gene/?term=YE3515
YE3516	YE3516		YE3516	3828311	3829272	-			gene	gene3468	http://www.ncbi.nlm.nih.gov/gene/?term=YE3516
YE3518	YE3518		YE3518	3829378	3829686	-	hypothetical protein	no significant database hits	gene	gene3469	http://www.ncbi.nlm.nih.gov/gene/?term=YE3518
YE3519	YE3519		YE3519	3829958	3830125	+	hypothetical protein	doubtful CDS with no significant database hits	gene	gene3470	http://www.ncbi.nlm.nih.gov/gene/?term=YE3519
YE3520	YE3520		YE3520	3830294	3831526	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty4665 SWALL:Q8Z1C5 (EMBL:AL627283) (529 aa) fasta scores: E(): 1.7e-29%2C 27.18 38d in 526 aa and to Xylella fastidiosa hypothetical protein Xf1753 SWALL:Q9PCM5 (EMBL:AE003998) (616 aa) fasta scores: E(): 3.3e-26%2C36.23 38d in 218 aa	gene	gene3471	http://www.ncbi.nlm.nih.gov/gene/?term=YE3520
YE3521	YE3521		YE3521	3832233	3833827	-			gene	gene3472	http://www.ncbi.nlm.nih.gov/gene/?term=YE3521
YE3522	YE3522		YE3522	3833849	3835166	-			gene	gene3473	http://www.ncbi.nlm.nih.gov/gene/?term=YE3522
YE3524	YE3524		YE3524	3835172	3835978	-			gene	gene3474	http://www.ncbi.nlm.nih.gov/gene/?term=YE3524
YE3524A	YE3524A		YE3524A	3836065	3836292	+			gene	gene3475	http://www.ncbi.nlm.nih.gov/gene/?term=YE3524A
YE3525	YE3525		YE3525	3836292	3836549	+	hypothetical protein	Similar to Pantoea agglomerans putative transposase b SWALL:Q9AM89 (EMBL:AF327445) (279 aa) fasta scores: E(): 1.6e-19%2C 61.17 38d in 85 aa%2C and to Pseudomonas syringae pv.eriobotryae psvA gene and 3 orfs SWALL:Q9R9F1 (EMBL:AB018553) (160 aa) fasta scores: E(): 1.7e-17%2C 60 id in 80 aa~contains Pfam Integrase core domain	gene	gene3476	http://www.ncbi.nlm.nih.gov/gene/?term=YE3525
YE3526	YE3526	potE	potE	3836661	3837980	-	putrescine transporter	catalyzes the uptake of putrescine via a proton symport mechanism%2C as well as the efflux of putrescine by a putrescine/ornithine antiport system	gene	gene3477	http://www.ncbi.nlm.nih.gov/gene/?term=YE3526
YE3527	YE3527	speF2	speF2	3838102	3840264	-	ornithine decarboxylase	Similar to Escherichia coli ornithine decarboxylase%2C inducible speF or b0693 SWALL:DCOS_ECOLI (SWALL:P24169) (732 aa) fasta scores: E(): 0%2C 75.97 38d in 720 aa%2C and to Salmonella typhimurium ornithine decarboxylase isozyme%2C inducible speF or stm0701 SWALL:Q8ZQW6 (EMBL:AE008728) (732 aa) fasta scores: E(): 0%2C 76.94 38d in 720 aa	gene	gene3478	http://www.ncbi.nlm.nih.gov/gene/?term=YE3527
YE3528	YE3528		YE3528	3841009	3842349	-	hypothetical protein		gene	gene3479	http://www.ncbi.nlm.nih.gov/gene/?term=YE3528
YE3529	YE3529		YE3529	3842531	3844303	-	hypothetical protein		gene	gene3480	http://www.ncbi.nlm.nih.gov/gene/?term=YE3529
YE3530	YE3530		YE3530	3844419	3845468	-	multidrug resistance protein MdtN	with MdtO and MdtP is involved in resistance to puromycin%2C acriflavine and tetraphenylarsonium chloride	gene	gene3481	http://www.ncbi.nlm.nih.gov/gene/?term=YE3530
YE3531	YE3531		YE3531	3845478	3845804	-	hypothetical protein		gene	gene3482	http://www.ncbi.nlm.nih.gov/gene/?term=YE3531
YE3532	YE3532		YE3532	3845878	3847341	-	hypothetical protein	Weakly similar to several including: Rhizobium meliloti hypothetical protein Ra0920 or Sma1677 SWALL:Q92YG0 (EMBL:AE007278) (480 aa) fasta scores: E(): 1.5e-76%2C 54.61 38d in 423 aa%2C Saccharomyces cerevisiae hypothetical 35.9 kDa protein yjl213w or j0234 or hrc331 SWALL:YJV3_YEAST (SWALL:P40896) (331 aa) fasta scores: E(): 4.1e-29%2C 39.57 38d in 331 aa and to Sulfolobus solfataricus prolidase Sso2040 SWALL:Q97WS6 (EMBL:AE006811) (408 aa) fasta scores: E(): 2.8e-22%2C31.52 38d in 425 aa	gene	gene3483	http://www.ncbi.nlm.nih.gov/gene/?term=YE3532
YE3533	YE3533	acpY	acpY	3847625	3847876	-	hypothetical protein	Previously sequenced as acpY	gene	gene3484	http://www.ncbi.nlm.nih.gov/gene/?term=YE3533
YE3534	YE3534		YE3534	3847876	3849801	-	serine rich protein	Previously sequenced as yspA	gene	gene3485	http://www.ncbi.nlm.nih.gov/gene/?term=YE3534
YE3535	YE3535	yspD	yspD	3850012	3851058	-	YspD protein		gene	gene3486	http://www.ncbi.nlm.nih.gov/gene/?term=YE3535
YE3536	YE3536	yspC	yspC	3851074	3852405	-	membrane protein	Previously sequenced as Yersinia enterocolitica YspC SWALL:Q93NK5 (EMBL:AF369954) (444 aa) fasta scores: E(): 2.3e-130%2C 94.59 38d in 444 aa. Also similar in parts to several others including: Caenorhabditis elegans hypothetical 56.9 kDa protein f53a3.4 SWALL:Q9TXQ5 (EMBL:AF025460) (545 aa) fasta scores: E(): 0.014%2C 21.68 id in 452 aa and to Streptococcus mutans glucan-binding protein B SWALL:Q938V2 (EMBL:AY046412) (432 aa) fasta scores: E(): 0.048%2C 22.18 38d in 311 aa	gene	gene3487	http://www.ncbi.nlm.nih.gov/gene/?term=YE3536
YE3537	YE3537	yspB	yspB	3852424	3854454	-	type III secretion system effector protein	Previously sequenced as Yersinia enterocolitica Ysp1 or YspB SWALL:Q933M2 (EMBL:AF005744) (676 aa) fasta scores: E(): 4.2e-199%2C 97.18 38d in 676 aa. Also similar to Salmonella typhi type III secretion system effector protein SipB protein or Sty3008 SWALL:Q56134 (EMBL:X82670) (593 aa) fasta scores: E(): 1.6e-11%2C 23.72 38d in 628 aa and to Shigella flexneri 62 kDa membrane antigen ipaB SWALL:IPAB_SHIFL (SWALL:P18011) (580 aa) fasta scores: E(): 3.9e-10%2C 20.89 38d in 579 aa	gene	gene3488	http://www.ncbi.nlm.nih.gov/gene/?term=YE3537
YE3538	YE3538	sycA	sycA	3854483	3854992	-	type III secretion apparatus protein	Previously sequenced as Yersinia enterocolitica type III secretion apparatus protein SycA or SycB SWALL:Q932S4 (EMBL:AF005744) (169 aa) fasta scores: E(): 1.2e-67%2C 97.63 38d in 169 aa. Also similar to Salmonella typhimurium%2C Salmonella typhi%2C and Salmonella dublin surface presentation of antigens protein SpaT or SicA or Stm2886 or sty3009 SWALL:SPAT_SALTY (SWALL:P40703) (165 aa) fasta scores: E(): 5e-32%2C 53.37 38d in 163 aa	gene	gene3489	http://www.ncbi.nlm.nih.gov/gene/?term=YE3538
YE3539	YE3539	ysaU	ysaU	3855090	3856214	-	surface presentation of antigens protein SpaS	Required for surface presentation of invasion plasmid antigens%3B required for invasion and for secretion of the three ipa proteins	gene	gene3490	http://www.ncbi.nlm.nih.gov/gene/?term=YE3539
YE3540	YE3540	ysaT	ysaT	3856230	3857030	-	type III secretion apparatus protein	Previously sequenced as Yersinia enterocolitica type III secretion apparatus protein YsaT SWALL:Q9KKH0 (EMBL:AF005744) (266 aa) fasta scores: E(): 1.7e-97%2C 100 id in 266 aa. Also highly similar to Salmonella typhimurium surface presentation of antigens protein SpaRor Stm2888 SWALL:SPAR_SALTY (SWALL:P40701) (263 aa) fasta scores: E(): 1.3e-31%2C 39.35 38d in 249 aa	gene	gene3491	http://www.ncbi.nlm.nih.gov/gene/?term=YE3540
YE3541	YE3541	ysaS	ysaS	3857030	3857299	-	type III secretion apparatus protein	Similar to Yersinia enterocolitica type III secretion apparatus protein YsaS SWALL:Q93NK6 (EMBL:AF369954) (89 aa) fasta scores: E(): 2.3e-29%2C 100 id in 89 aa%2C and to Salmonella typhimurium%2C Salmonella typhi%2C Salmonella dublin%2C Salmonella enteritidis%2CSalmonella gallinarum%2C Salmonella senftenberg%2C and Salmonella typhisuis surface presentation of antigens protein spaq spaq or stm2889 or sty3012 SWALL:SPAQ_SALTY (SWALL:P40704) (86 aa) fasta scores: E(): 9.3e-15%2C 53.57 id in 84 aa	gene	gene3492	http://www.ncbi.nlm.nih.gov/gene/?term=YE3541
YE3542	YE3542	spaP	spaP	3857315	3857989	-	surface presentation of antigens protein SpaP	part of a type III secretory system probably involved in invasion into eukaryotic cells	gene	gene3493	http://www.ncbi.nlm.nih.gov/gene/?term=YE3542
YE3542A	YE3542A	ysaQ	ysaQ	3857992	3858930	-	type III secretion apparatus protein	Similar to Yersinia enterocolitica type III secretion apparatus protein YsaQ SWALL:Q9KKH3 (EMBL:AF005744) (312 aa) fasta scores: E(): 4.5e-121%2C99.67 38d in 312 aa%2C and to Salmonella typhi surface presentation of antigens protein spaO or Sty3014 SWALL:SPAO_SALTI (SWALL:Q56022) (303 aa) fasta scores: E(): 4e-06%2C 24.75 38d in 311 aa	gene	gene3494	http://www.ncbi.nlm.nih.gov/gene/?term=YE3542A
YE3543	YE3543		YE3543	3858930	3859997	-	type III secretion protein	The predicted product of this CDS encompasses two CDS previously published in this bacterium: Q9KKH4 and Q9KKH5	gene	gene3495	http://www.ncbi.nlm.nih.gov/gene/?term=YE3543
YE3543A	YE3543A		YE3543A	3859969	3860424	-	hypothetical protein	Similar to Yersinia enterocolitica orf8 SWALL:Q9KKH6 (EMBL:AF005744) (151 aa) fasta scores: E(): 1.1e-45%2C 100 38d in 151 aa	gene	gene3496	http://www.ncbi.nlm.nih.gov/gene/?term=YE3543A
YE3544	YE3544	ysaN	ysaN	3860424	3861716	-	ATP synthase SpaL	Invasion protein InvC%3B necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase	gene	gene3497	http://www.ncbi.nlm.nih.gov/gene/?term=YE3544
YE3545	YE3545	ysaK	ysaK	3861720	3862127	-	type III secretion system protein	Previously sequenced as Yersinia enterocolitica type III secretion sytem protein YsaK SWALL:O30437 (EMBL:AF005744) (135 aa) fasta scores: E(): 8.2e-55%2C 100 id in 135 aa. Also similar to Sodalis glossinidius InvB SWALL:Q9EZ20 (EMBL:AF306649) (135 aa) fasta scores: E(): 5.1e-07%2C 29.63 38d in 135 aa and to Shigella sonnei surface presentation of antigens protein Spak or spa15 SWALL:SPAK_SHISO (SWALL:Q55296) (133 aa) fasta scores: E(): 0.00069%2C 26.15 38d in 130 aa	gene	gene3498	http://www.ncbi.nlm.nih.gov/gene/?term=YE3545
YE3546	YE3546	ysaV	ysaV	3862139	3864211	-	type III secretion system apparatus protein	Previously sequenced as: Yersinia enterocolitica YsaV SWALL:O30436 (EMBL:AF005744) (690 aa) fasta scores: E(): 0%2C 100 38d in 690 aa. Also similar to Salmonella typhimurium%2C and Salmonella typhi invasion protein InvA inva or stm2896 or sty3019 SWALL:INVA_SALTY (SWALL:P35657) (685 aa) fasta scores: E(): 3.1e-136%2C 53.05 38d in 688 aa	gene	gene3499	http://www.ncbi.nlm.nih.gov/gene/?term=YE3546
YE3547	YE3547	ysaW	ysaW	3864208	3865317	-	type III secreted effector protein	Previously sequenced as: Yersinia enterocolitica type III secreted effector protein%2C YsaW SWALL:Q9KKH7 (EMBL:AF005744) (373 aa) fasta scores: E(): 1.9e-120%2C90.13 38d in 365 aa%2C and to Salmonella enterica invasion protein invE SWALL:Q54031 (EMBL:U43259) (372 aa) fasta scores: E(): 4.9e-15%2C 27.27 38d in 341 aa. Note the differing N-terminal sequence with that previously published.	gene	gene3500	http://www.ncbi.nlm.nih.gov/gene/?term=YE3547
YE3548	YE3548	ysaC	ysaC	3865308	3866999	-	type III secretion system protein	Previously sequenced as: Yersinia enterocolitica type III secreted effector protein%2C YsaC SWALL:Q9KKH8 (EMBL:AF005744) (525 aa) fasta scores: E(): 8.3e-190%2C97.9 38d in 524 aa. Note the differing sequence at the very C-terminus. Also similar to Salmonella typhimurium InvG protein precursor or Stm2898 SWALL:INVG_SALTY (SWALL:P35672) (562 aa) fasta scores: E(): 4.3e-72%2C 40.11 id in 526 aa	gene	gene3501	http://www.ncbi.nlm.nih.gov/gene/?term=YE3548
YE3549	YE3549	ysaE	ysaE	3866989	3867669	-	AraC family transcription regulator	C-terminal region is highly similar to that previously sequenced: Yersinia enterocolitica hypothetical protein YsaE SWALL:Q9KKH9 (EMBL:AF005744) (138 aa) fasta scores: E(): 1.3e-51%2C 99.27 38d in 138 aa. Note the N-terminal extension of the product of this CDS compared to that previously published for Yersinia enterocolitica YsaE. The full length CDS is weakly similar to Salmonella typhimurium%2C and Salmonella typhi invasion protein InvF SWALL:INVF_SALTY (SWALL:P39437) (216 aa) fasta scores: E(): 3.6e-09%2C 26.75 38d in 228 aa.	gene	gene3502	http://www.ncbi.nlm.nih.gov/gene/?term=YE3549
YE3550	YE3550		YE3550	3867949	3869178	+	hypothetical protein	Weakly similar over the whole range to CDS associated with virulence including: Salmonella typhimurium protein required for invasion of epithelial cells PrgH or Stm2874 SWALL:PRGH_SALTY (SWALL:P41783) (392 aa) fasta scores: E(): 3.3e-11%2C 22.22 38d in 396 aa%2C and to Shigella flexneri and Shigella sonnei MxiG protein involved in the intracellular dissemination of shigella SWALL:MXIG_SHIFL (SWALL:Q57332) (371 aa) fasta scores: E(): 0.015%2C 21.05 38d in 399 aa. The N-terminus is identical to an internal region of Yersinia enterocolitica hypothetical protein Orf7 SWALL:Q9KKI0 (EMBL:AF005744) (168 aa) fasta scores: E(): 1.9e-28%2C 100 38d in 88 aa. Internal region is highly similar to the C-terminus of Yersinia enterocolitica hypothetical protein Orf6 SWALL:Q9KKI1 (EMBL:AF005744) (214 aa) fasta scores: E(): 3.1e-78%2C 98.59 38d in 214 aa.	gene	gene3503	http://www.ncbi.nlm.nih.gov/gene/?term=YE3550
YE3551	YE3551		YE3551	3869209	3869517	+	hypothetical protein		gene	gene3504	http://www.ncbi.nlm.nih.gov/gene/?term=YE3551
YE3552	YE3552	ysaI	ysaI	3869576	3869878	+	virulence associated protein	Highly similar to Yersinia enterocolitica hypothetical protein YsaI SWALL:Q9KKI2 (EMBL:AF005744) (100 aa) fasta scores: E(): 5.1e-35%2C 99 38d in 100 aa. C-terminus is similar to the C-terminal region of Salmonella typhi pathogenicity 1 island effector protein PrgJ or STY2993 SWALL:Q8Z4A1 (EMBL:AL627276) (101 aa) fasta scores: E(): 1%2C 30 38d in 60 aa	gene	gene3505	http://www.ncbi.nlm.nih.gov/gene/?term=YE3552
YE3553	YE3553	ysaJ	ysaJ	3869882	3870625	+	type III secretion system apparatus lipoprotein	Previously sequenced as Yersinia enterocolitica type III secretion apparatus lipoprotein YsaJ SWALL:Q9KKI3 (EMBL:AF005744) (247 aa) fasta scores: E(): 1.4e-89%2C 100 id in 247 aa%2C and to Escherichia coli O157:H7 putative lipoprotein of type III secretion apparatus z4180 or ecs3716 SWALL:Q8X6G6 (EMBL:AE005514) (244 aa) fasta scores: E(): 1.8e-29%2C 42.41 38d in 224 aa	gene	gene3506	http://www.ncbi.nlm.nih.gov/gene/?term=YE3553
YE3554	YE3554		YE3554	3870622	3871170	+	hypothetical protein	No significant database matches to the full length CDS. N-terminus is highly similar to the N-terminal region of the previously sequenced Yersinia enterocolitica hypothetical protein SWALL:Q93NL2 (EMBL:AF369954) (191 aa) fasta scores: E(): 2.9e-60%2C 98.67 38d in 151 aa.	gene	gene3507	http://www.ncbi.nlm.nih.gov/gene/?term=YE3554
YE3555	YE3555		YE3555	3871205	3871849	+	hypothetical protein	Highly similar to Yersinia enterocolitica hypothetical protein SWALL:Q93NL3 (EMBL:AF369954) (230 aa) fasta scores: E(): 1.2e-76%2C 98.7 38d in 231 aa. Weakly similar to Salmonella typhimurium oxygen-regulated invasion protein orgB or STM2869 SWALL:ORGB_SALTY (SWALL:P58654) (226 aa) fasta scores: E(): 0.11%2C 22.92 38d in 205 aa	gene	gene3508	http://www.ncbi.nlm.nih.gov/gene/?term=YE3555
YE3556	YE3556		YE3556	3871917	3872288	+	hypothetical protein	Poor database matches. Similar to the C-terminal region of the previously sequenced Yersinia enterocolitica hypothetical protein Orf3 SWALL:Q9KKI6 (EMBL:AF005744) (212 aa) fasta scores: E(): 1.2e-53%2C 93.47 38d in 123 aa	gene	gene3509	http://www.ncbi.nlm.nih.gov/gene/?term=YE3556
YE3557	YE3557	ysaH	ysaH	3872301	3872777	+	type III secretion system effector protein	Previously sequenced as:Yersinia enterocolitica hypothetical protein YsaH SWALL:Q9KKJ1 (EMBL:AF005744) (158 aa) fasta scores: E(): 1.6e-61%2C 99.36 38d in 158 aa. Also highly similar to Salmonella typhimurium type III secreted invasion protein IagB or STM2877 SWALL:IAGB_SALTY (SWALL:P43017) (160 aa) fasta scores: E(): 6.5e-13%2C 40.6 id in 133 aa.	gene	gene3510	http://www.ncbi.nlm.nih.gov/gene/?term=YE3557
YE3558	YE3558		YE3558	3872952	3873437	+	hypothetical protein	Identical to the previously sequenced: Yersinia enterocolitica Orf1 SWALL:Q9KKJ0 (EMBL:AF005744) (161 aa) fasta scores: E(): 1.3e-60%2C 100 38d in 161 aa. Similar to N-terminal region Salmonella typhimurium putative inner membrane protein STM0341 SWALL:Q8ZRH8 (EMBL:AE008710) (254 aa) fasta scores: E(): 4.1e-09%2C 31.44 38d in 159 aa	gene	gene3511	http://www.ncbi.nlm.nih.gov/gene/?term=YE3558
YE3559	YE3559		YE3559	3873442	3873876	+	hypothetical protein	Similar to the C-terminal region Yersinia enterocolitica Orf2 SWALL:Q9KKI9 (EMBL:AF005744) (170 aa) fasta scores: E(): 3.1e-51%2C 99.3 38d in 144 aa%2C and to Vibrio cholerae lipoprotein-related protein vc1064 SWALL:Q9KT41 (EMBL:AE004188) (143 aa) fasta scores: E(): 0.46%2C 21.36 38d in 117 aa	gene	gene3512	http://www.ncbi.nlm.nih.gov/gene/?term=YE3559
YE3560	YE3560	ysrR	ysrR	3873905	3874615	+	response regulator protein	Two-component regulatory system family%2C response regulator protein. Previously sequenced as Yersinia enterocolitica LuxR/UhpA family of transcriptional regulator YsrR SWALL:Q9KKI8 (EMBL:AF005744) (236 aa) fasta scores: E(): 1.5e-90%2C 98.72 38d in 236 aa. C-terminal region is similar Escherichia coli%2C and Escherichia coli O157:H7 fimbriae Z protein FimZ SWALL:FIMZ_ECOLI (SWALL:P21502) (210 aa) fasta scores: E(): 4.1e-12%2C 33.33 id in 183 aa. Similar to YE3578%2C 81.356 38dentity (82.051 ungapped) in 236 aa overlap	gene	gene3513	http://www.ncbi.nlm.nih.gov/gene/?term=YE3560
YE3561	YE3561	ysrS	ysrS	3874599	3876968	+	sensor kinase protein	Two-component regulatory system family%2C sensor kinase protein. Previously sequenced as Yersinia enterocolitica YsrS SWALL:Q9KKI7 (EMBL:AF005744) (791 aa) fasta scores: E(): 0%2C 99.62 38d in 789 aa. N-terminus region is similar to the N-terminal region of Burkholderia cepacia putative sensory protein CblE SWALL:AAL92877 (EMBL:AY082893) (717 aa) fasta scores: E(): 3.1e-25%2C27.15 38d in 556 aa. Similar to YE3579%2C 87.134 0dentity (87.35638ngapped) in 785 aa overlap. Note the large overlap with the upstream CDS.	gene	gene3514	http://www.ncbi.nlm.nih.gov/gene/?term=YE3561
YE3561A	YE3561A		YE3561A	3876961	3877209	+	hypothetical protein	Previously published: Yersinia enterocolitica OrfA SWALL:Q937S6 (EMBL:AF005744) (64 aa) fasta scores: E(): 5.2e-23%2C 100 38d in 64 aa~No significant database matches	gene	gene3515	http://www.ncbi.nlm.nih.gov/gene/?term=YE3561A
YE3562	YE3562		YE3562	3877682	3878191	+	hypothetical protein	Weakly similar to Escherichia coli cytochrome b561 CybB SWALL:C561_ECOLI (SWALL:P08732) (176 aa) fasta scores: E(): 0.00025%2C 26.16 38d in 172 aa%2C and to Yersinia pestis putative membrane protein YPO2316 SWALL:Q8ZE67 (EMBL:AJ414152) (184 aa) fasta scores: E(): 1.5e-08%2C28.49 38d in 179 aa	gene	gene3516	http://www.ncbi.nlm.nih.gov/gene/?term=YE3562
YE3563	YE3563		YE3563	3878242	3878727	+	hypothetical protein	N-terminal region is similar to Yersinia pestis hypothetical protein YPO0818 SWALL:Q8ZHR7 (EMBL:AJ414144) (138 aa) fasta scores: E(): 1.1e-13%2C 45.45 38d in 99 aa%2Cand to Salmonella typhi putative membrane protein STY0035 SWALL:Q8Z9P4 (EMBL:AL627265) (149 aa) fasta scores: E(): 0.021%2C 26.01 38d in 123 aa	gene	gene3517	http://www.ncbi.nlm.nih.gov/gene/?term=YE3563
YE3564	YE3564	yst1C	yst1C	3878724	3879266	+	general secretion pathway protein C	Weakly similar to the C-terminal regions of Aeromonas salmonicida general secretion pathway protein C ExeC SWALL:GSPC_AERSA (SWALL:P45772) (290 aa) fasta scores: E(): 0.00021%2C 29.18 38d in 185 aa and Escherichia coli EtpC protein SWALL:O32565 (EMBL:Y09824) (291 aa) fasta scores: E(): 2.1e-05%2C 32.27 38d in 158 aa	gene	gene3518	http://www.ncbi.nlm.nih.gov/gene/?term=YE3564
YE3565	YE3565		YE3565	3879335	3881311	+	general secretion pathway protein D	Similar to Erwinia carotovora general secretion pathway protein D precursor outD SWALL:GSPD_ERWCA (SWALL:P31701) (650 aa) fasta scores: E(): 5.8e-49%2C 54.19 id in 644 aa%2C and to Yersinia pestis general secretion pathway protein D YPO0816 SWALL:Q8ZHR9 (EMBL:AJ414144) (640 aa) fasta scores: E(): 1.8e-105%2C 48.97 38d in 633 aa. CDS is extended at the N-terminus in comparison to some orthologues. Similar to YE3349%2C 50.850 38dentity (51.811 ungapped) in 647 aa overlap	gene	gene3519	http://www.ncbi.nlm.nih.gov/gene/?term=YE3565
YE3566	YE3566	yst1E	yst1E	3881308	3882804	+	general secretion pathway protein E	Similar to Erwinia carotovora general secretion pathway protein E OutE SWALL:GSPE_ERWCA (SWALL:P31703) (498 aa) fasta scores: E(): 8e-102%2C 62.02 38d in 495 aa%2Cand to Aeromonas hydrophila general secretion pathway protein E ExeE SWALL:GSPE_AERHY (SWALL:P31741) (501 aa) fasta scores: E(): 6.5e-105%2C 63.87 38d in 490 aa. Similar to YE3348%2C 56.996 38dentity (57.9500ngapped) in 486 aa overlap	gene	gene3520	http://www.ncbi.nlm.nih.gov/gene/?term=YE3566
YE3567	YE3567	yst1F	yst1F	3882801	3884018	+	general secretion pathway protein F	Similar to Erwinia carotovora general secretion pathway protein F OutF SWALL:GSPF_ERWCA (SWALL:P31705) (408 aa) fasta scores: E(): 5.6e-84%2C 60.75 38d in 400 aa%2Cand to Aeromonas hydrophila general secretion pathway protein F ExeF SWALL:GSPF_AERHY (SWALL:P31743) (388 aa) fasta scores: E(): 4.9e-72%2C 54.18 38d in 382 aa	gene	gene3521	http://www.ncbi.nlm.nih.gov/gene/?term=YE3567
YE3568	YE3568	yst1G	yst1G	3884050	3884517	+	general secretion pathway protein G	Similar to Erwinia carotovora general secretion pathway protein G precursor OutG SWALL:GSPG_ERWCA (SWALL:P31586) (156 aa) fasta scores: E(): 6e-37%2C 73.13 id in 134 aa%2C and to Aeromonas hydrophila general secretion pathway protein G precursor ExeG SWALL:GSPG_AERHY (SWALL:P31733) (143 aa) fasta scores: E(): 2.2e-38%2C 73.18 38d in 138 aa. Similar to YE3346%2C60.976 38dentity (60.9760ngapped) in 123 aa overlap	gene	gene3522	http://www.ncbi.nlm.nih.gov/gene/?term=YE3568
YE3569	YE3569	yst1H	yst1H	3884517	3885086	+	general secretion pathway protein H		gene	gene3523	http://www.ncbi.nlm.nih.gov/gene/?term=YE3569
YE3570	YE3570	yst1I	yst1I	3885092	3885454	+	general secretion pathway protein I	Similar to Erwinia carotovora general secretion pathway protein I precursor OutI SWALL:GSPI_ERWCA (SWALL:P31588) (121 aa) fasta scores: E(): 6.3e-22%2C 50.86 id in 116 aa%2C and to Aeromonas hydrophila general secretion pathway protein I precursor ExeI SWALL:GSPI_AERHY (SWALL:P31737) (119 aa) fasta scores: E(): 2.6e-21%2C 50.86 38d in 116 aa	gene	gene3524	http://www.ncbi.nlm.nih.gov/gene/?term=YE3570
YE3570a	YE3570a	yst1J	yst1J	3885451	3886050	+	general secretion pathway protein J	Similar to Erwinia carotovora general secretion pathway protein J precursor OutJ SWALL:GSPJ_ERWCA (SWALL:P31589) (216 aa) fasta scores: E(): 2.7e-25%2C 37.81 id in 201 aa%2C and to Aeromonas hydrophila general secretion pathway protein J precursor ExeJ SWALL:GSPJ_AERHY (SWALL:P31739) (207 aa) fasta scores: E(): 7.7e-24%2C 37.31 38d in 201 aa. The CDS appears to be truncated at the N-terminus in comparison to the E. carotovora protein%2C but is a similar length to other orthologues	gene	gene3525	http://www.ncbi.nlm.nih.gov/gene/?term=YE3570a
YE3571	YE3571	yst1K	yst1K	3886040	3887077	+	general secretion pathway protein K	Similar to Erwinia carotovora general secretion pathway protein K OutK SWALL:GSPK_ERWCA (SWALL:P31706) (328 aa) fasta scores: E(): 2.6e-17%2C 33.13 38d in 341 aa%2Cand to Aeromonas hydrophila general secretion pathway protein K ExeK SWALL:GSPK_AERHY (SWALL:P31760) (331 aa) fasta scores: E(): 9.8e-15%2C 31.01 38d in 345 aa	gene	gene3526	http://www.ncbi.nlm.nih.gov/gene/?term=YE3571
YE3572	YE3572	yst1L	yst1L	3887079	3888278	+	general secretion pathway protein L	Similar to Aeromonas hydrophila general secretion pathway protein L ExeL SWALL:GSPL_AERHY (SWALL:P45789) (389 aa) fasta scores: E(): 8.8e-27%2C 31.4 38d in 363 aa%2Cand to Erwinia carotovora general secretion pathway protein L OutL SWALL:GSPL_ERWCA (SWALL:P31708) (425 aa) fasta scores: E(): 2.4e-12%2C 25.7 38d in 393 aa	gene	gene3527	http://www.ncbi.nlm.nih.gov/gene/?term=YE3572
YE3573	YE3573	yst1M	yst1M	3888265	3888759	+	general secretion pathway protein M	Similar to Erwinia carotovora general secretion pathway protein M OutM SWALL:GSPM_ERWCA (SWALL:P31709) (164 aa) fasta scores: E(): 2.5e-05%2C 26.54 38d in 162 aa%2Cand to Klebsiella pneumoniae general secretion pathway protein M PulM SWALL:GSPM_KLEPN (SWALL:P15752) (161 aa) fasta scores: E(): 2.9e-06%2C 26.62 38d in 154 aa	gene	gene3528	http://www.ncbi.nlm.nih.gov/gene/?term=YE3573
YE3574	YE3574	yst1O	yst1O	3888768	3889553	+	type 4 prepilin-like proteins leader peptide processing enzyme	Similar to Erwinia carotovora type 4 prepilin-like proteins leader peptide processing enzyme OutO SWALL:LEP4_ERWCA (SWALL:P31712) (279 aa) fasta scores: E(): 9.2e-41%2C 54.86 38d in 257 aa%2C and to Aeromonas salmonicida type 4 prepilin-like proteins leader peptide processing enzyme [includes: leader peptidase%3B N-methyltransferase] TapD or PilD SWALL:LEP4_AERSA (SWALL:O68964) (291 aa) fasta scores: E(): 6.6e-48%2C 53.78 id in 264 aa	gene	gene3529	http://www.ncbi.nlm.nih.gov/gene/?term=YE3574
YE3575	YE3575	yst1S	yst1S	3889575	3889976	-	secretion protein	Similar to Erwinia chrysanthemi OutS protein precursor SWALL:OUTS_ERWCH (SWALL:Q01567) (133 aa) fasta scores: E(): 2.7e-07%2C 34.16 38d in 120 aa%2C and to Klebsiella pneumoniae pullulanase secretion protein PulS SWALL:PULS_KLEPN (SWALL:P20440) (125 aa) fasta scores: E(): 1e-07%2C 31.09 38d in 119 aa	gene	gene3530	http://www.ncbi.nlm.nih.gov/gene/?term=YE3575
YE3576	YE3576	ChiY	ChiY	3890393	3891877	+	N-acetylglucosamine-binding protein A	GbpA%3B plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium%3B in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin%2C glycoproteins and lipids on intestinal epithelial cells	gene	gene3531	http://www.ncbi.nlm.nih.gov/gene/?term=YE3576
YE3577	YE3577		YE3577	3892116	3893495	+	hypothetical protein	Similar to the C-terminal region of Streptomyces coelicolor putative integral membrane protein SCO0987 or SCBAC19F3.14 SWALL:Q93J57 (EMBL:AL596102) (517 aa) fasta scores: E(): 3.4e-53%2C 38.71 38d in 465 aa. Full length CDS is weakly similar to Bacillus halodurans hypothetical protein BH1854 SWALL:Q9KBS1 (EMBL:AP001513) (445 aa) fasta scores: E(): 3.8e-14%2C 25.49 38d in 451 aa	gene	gene3532	http://www.ncbi.nlm.nih.gov/gene/?term=YE3577
YE3578	YE3578		YE3578	3893711	3894415	+	response regulator protein	Two-component regulatory system family%2C response regulator protein. C-terminal region is similar to Escherichia coli%2C and Escherichia coli O157:H7 fimbriae Z protein FimZ SWALL:FIMZ_ECOLI (SWALL:P21502) (210 aa) fasta scores: E(): 2.9e-10%2C 31.69 38d in 183 aa. Full length CDS is similar to Yersinia enterocolitica LuxR/UhpA family transcriptional regulator YsrR SWALL:Q9KKI8 (EMBL:AF005744) (236 aa) fasta scores: E(): 1.5e-72%2C80.93 38d in 236 aa. Similar to YE3560%2C 81.356 0dentity (82.05138ngapped) in 236 aa overlap	gene	gene3533	http://www.ncbi.nlm.nih.gov/gene/?term=YE3578
YE3579	YE3579		YE3579	3894393	3896750	+	sensor kinase protein	Two-component regulatory system family%2C sensor kinase protein. Similar to Yersinia enterocolitica putative sensory transduction histidine kinase YsrS SWALL:Q9KKI7 (EMBL:AF005744) (791 aa) fasta scores: E(): 0%2C 87 38d in 785 aa. Similar to YE3561%2C 87.134 0dentity (87.35638ngapped) in 785 aa overlap	gene	gene3534	http://www.ncbi.nlm.nih.gov/gene/?term=YE3579
YE3580	YE3580		YE3580	3897044	3897183	-			gene	gene3535	http://www.ncbi.nlm.nih.gov/gene/?term=YE3580
YE3581	YE3581		YE3581	3897562	3897828	+	hypothetical protein		gene	gene3536	http://www.ncbi.nlm.nih.gov/gene/?term=YE3581
YE3582	YE3582	map	map	3897825	3898610	+	methionine aminopeptidase		gene	gene3537	http://www.ncbi.nlm.nih.gov/gene/?term=YE3582
YE3583	YE3583		YE3583	3898753	3899511	-	iron ABC transporter ATP-binding protein		gene	gene3538	http://www.ncbi.nlm.nih.gov/gene/?term=YE3583
YE3584	YE3584		YE3584	3899508	3900515	-	iron transport permease		gene	gene3539	http://www.ncbi.nlm.nih.gov/gene/?term=YE3584
YE3585	YE3585		YE3585	3900505	3901464	-	iron transport permease		gene	gene3540	http://www.ncbi.nlm.nih.gov/gene/?term=YE3585
YE3586	YE3586		YE3586	3901474	3902427	-	iron transport protein		gene	gene3541	http://www.ncbi.nlm.nih.gov/gene/?term=YE3586
YE3587	YE3587		YE3587	3902746	3903213	-	O-methyltransferase	Possible pseudogene. Similar to internal regions of Streptomyces lipmanii O-demethylpuromycin-o-methyltransferase DmpM SWALL:DMPM_STRLP (SWALL:P42712) (376 aa) fasta scores: E(): 4.4e-11%2C 37.25 38d in 153 aa%2C and Streptomyces avermitilis O-methyltransferase SWALL:Q93HA8 (EMBL:AB070947) (359 aa) fasta scores: E(): 5.4e-08%2C31.78 38d in 151 aa. Similar to an internal region of YE1418%2C 62.252 38dentity (62.2520ngapped) in 151 aa overlap	gene	gene3542	http://www.ncbi.nlm.nih.gov/gene/?term=YE3587
YE3588	YE3588		YE3588	3903486	3904889	+	transporter protein	Similar to the N-terminal region of Escherichia coli%2C and Escherichia coli O157:H7 proline/betaine transporter ProP SWALL:PROP_ECOLI (SWALL:P30848) (500 aa) fasta scores: E(): 8e-45%2C 34.72 38d in 432 aa%2C and to the full length Campylobacter jejuni putative transmembrane transport protein CJ0339 SWALL:Q9PIG1 (EMBL:AL139074) (453 aa) fasta scores: E(): 5.8e-128%2C 72.38 38d in 449 aa	gene	gene3543	http://www.ncbi.nlm.nih.gov/gene/?term=YE3588
YE3589	YE3589		YE3589	3905083	3906102	+	LacI family regulatory protein	Similar to Escherichia coli%2C and Escherichia coli O157:H7 ribose operon repressor RbsR SWALL:RBSR_ECOLI (SWALL:P25551) (329 aa) fasta scores: E(): 8.6e-31%2C 35.35 id in 314 aa%2C and to Streptomyces coelicolor hypothetical transcriptional regulator SCO4158 or SCD84.25c SWALL:Y5F8_STRCO (SWALL:Q05954) (340 aa) fasta scores: E(): 1e-34%2C 37.24 38d in 341 aa	gene	gene3544	http://www.ncbi.nlm.nih.gov/gene/?term=YE3589
YE3590	YE3590		YE3590	3906127	3907197	+	hydrolase	Similar to Crithidia fasciculata inosine-uridine preferring nucleoside hydrolase IunH SWALL:IUNH_CRIFA (SWALL:Q27546) (314 aa) fasta scores: E(): 7.7e-18%2C 31.02 id in 332 aa%2C and to Campylobacter jejuni putative nucleoside hydrolase CJ0340 SWALL:Q9PIG0 (EMBL:AL139074) (335 aa) fasta scores: E(): 1.4e-49%2C 45.2 38d in 323 aa. CDS is extended at the C-terminus in comparison to orthologues	gene	gene3545	http://www.ncbi.nlm.nih.gov/gene/?term=YE3590
YE3591	YE3591		YE3591	3907361	3908980	+	Na+/Pi-cotransporter	Similar to Escherichia coli hypothetical protein YjbB or b4020 SWALL:YJBB_ECOLI (SWALL:P32683) (543 aa) fasta scores: E(): 6e-124%2C 64.55 38d in 536 aa%2C and to Salmonella typhi putative membrane protein STY4406 SWALL:Q8Z1V5 (EMBL:AL627282) (543 aa) fasta scores: E(): 1.6e-122%2C 65.22 38d in 532 aa	gene	gene3546	http://www.ncbi.nlm.nih.gov/gene/?term=YE3591
YE3592	YE3592		YE3592	3909060	3909587	-	isochorismatase family protein	Similar to Streptococcus pneumoniae isochorismatase family protein SP1745 SWALL:Q97P96 (EMBL:AE007467) (166 aa) fasta scores: E(): 1.7e-11%2C 33.33 38d in 150 aa%2C and to Clostridium acetobutylicum amidase from nicotinamidase family CAC3465 SWALL:Q97DL0 (EMBL:AE007844) (178 aa) fasta scores: E(): 2.4e-09%2C 26.92 38d in 156 aa	gene	gene3547	http://www.ncbi.nlm.nih.gov/gene/?term=YE3592
YE3593	YE3593		YE3593	3909765	3910331	-	hypothetical protein	Similar to Yersinia pestis putative exported protein YPO1003 SWALL:Q8ZHA2 (EMBL:AJ414145) (195 aa) fasta scores: E(): 2.6e-49%2C 71.79 38d in 195 aa%2C and to Salmonella typhi putative exported protein STY4152 SWALL:Q8Z2B0 (EMBL:AL627281) (179 aa) fasta scores: E(): 5.1e-40%2C 63.12 38d in 160 aa	gene	gene3548	http://www.ncbi.nlm.nih.gov/gene/?term=YE3593
YE3594	YE3594	proP	proP	3910509	3912011	-	proline/glycine betaine transporter	Similar to Escherichia coli%2C and Escherichia coli O157:H7 proline/betaine transporter ProP SWALL:PROP_ECOLI (SWALL:P30848) (500 aa) fasta scores: E(): 2.6e-155%2C79.51 38d in 498 aa%2C and to Salmonella typhimurium proline/betaine transporter STM4290 SWALL:PROP_SALTY (SWALL:P40862) (500 aa) fasta scores: E(): 6.7e-156%2C80.12 38d in 498 aa	gene	gene3549	http://www.ncbi.nlm.nih.gov/gene/?term=YE3594
YE3595	YE3595		YE3595	3912249	3915374	-	integral membrane efflux protein		gene	gene3550	http://www.ncbi.nlm.nih.gov/gene/?term=YE3595
YE3596	YE3596		YE3596	3915387	3916589	-	drug efflux protein		gene	gene3551	http://www.ncbi.nlm.nih.gov/gene/?term=YE3596
YE3597	YE3597		YE3597	3917096	3919594	+	hypothetical protein		gene	gene3552	http://www.ncbi.nlm.nih.gov/gene/?term=YE3597
YE3598	YE3598		YE3598	3919673	3920344	-	hypothetical protein	Similar to Salmonella typhimurium putative outer membrane lipoprotein STM1607 SWALL:Q8ZPC4 (EMBL:AE008770) (222 aa) fasta scores: E(): 3.1e-32%2C 43.19 38d in 213 aa%2Cand to Escherichia coli%2C and Escherichia coli O157:H7 hypothetical lipoprotein YdcL SWALL:YDCL_ECOLI (SWALL:P76101) (222 aa) fasta scores: E(): 2.4e-31%2C 42.45 id in 212 aa	gene	gene3553	http://www.ncbi.nlm.nih.gov/gene/?term=YE3598
YE3599	YE3599	thiM	thiM	3920539	3921321	-	hydroxyethylthiazole kinase	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP	gene	gene3554	http://www.ncbi.nlm.nih.gov/gene/?term=YE3599
YE3600	YE3600	hydA	hydA	3921409	3923685	-	hydrogenase maturation protein	Similar to Escherichia coli hydrogenase maturation protein HypF or HydA SWALL:HYPF_ECOLI (SWALL:P30131) (750 aa) fasta scores: E(): 1.1e-114%2C 62.54 38d in 761 aa%2C and to Salmonella typhi hydrogenase maturation protein STY2964 SWALL:Q8Z4C3 (EMBL:AL627276) (746 aa) fasta scores: E(): 7.6e-116%2C 62.64 38d in 755 aa	gene	gene3555	http://www.ncbi.nlm.nih.gov/gene/?term=YE3600
YE3601	YE3601	hypE	hypE	3923972	3924940	-	hydrogenase isoenzymes formation protein	Similar to Escherichia coli hydrogenase isoenzymes formation protein HypE SWALL:HYPE_ECOLI (SWALL:P24193) (322 aa) fasta scores: E(): 4.5e-90%2C 72.98 38d in 322 aa%2Cand to Salmonella typhi hydrogenase isoenzymes formation protein STY2980 SWALL:Q8Z4B3 (EMBL:AL627276) (322 aa) fasta scores: E(): 2.2e-90%2C 73.29 38d in 322 aa	gene	gene3556	http://www.ncbi.nlm.nih.gov/gene/?term=YE3601
YE3602	YE3602	hypD	hypD	3925089	3926192	-	hydrogenase isoenzymes formation protein	Similar to Escherichia coli hydrogenase isoenzymes formation protein HypD SWALL:HYPD_ECOLI (SWALL:P24192) (373 aa) fasta scores: E(): 1.9e-106%2C 68.66 38d in 367 aa%2Cand to Salmonella typhi hydrogenase isoenzymes formation protein STY2979 SWALL:Q8Z4B4 (EMBL:AL627276) (373 aa) fasta scores: E(): 1.4e-106%2C 69.18 38d in 370 aa	gene	gene3557	http://www.ncbi.nlm.nih.gov/gene/?term=YE3602
YE3602A	YE3602A	hybG	hybG	3926179	3926463	-	hydrogenase 2 accessory protein HypG		gene	gene3558	http://www.ncbi.nlm.nih.gov/gene/?term=YE3602A
YE3603	YE3603	hypB	hypB	3926454	3927554	-	hydrogenase isoenzymes nickel incorporation protein	C-terminal region is similar to Escherichia coli hydrogenase isoenzymes nickel incorporation protein HypB SWALL:HYPB_ECOLI (SWALL:P24190) (290 aa) fasta scores: E(): 4.4e-63%2C 65.6 38d in 282 aa%2C Full length CDS is similar to Azotobacter chroococcum Mcd 1 hydrogenase nickel incorporation protein HypB or HupB SWALL:HYPB_AZOCH (SWALL:Q43949) (305 aa) fasta scores: E(): 5.5e-54%2C 51.36 id in 366 aa. CDS contain an internal region with additional amino acids relative to orthologues%2C residues 19 to 130. Contained within this region is a histidine rich domain%2C residues 20 to 52. Effect on the function of CDS is not known. Possible pseudogene	gene	gene3559	http://www.ncbi.nlm.nih.gov/gene/?term=YE3603
YE3603a	YE3603a	hybF	hybF	3927575	3927916	-	hydrogenase nickel incorporation protein HybF	plays a role in hydrogenase nickel cofactor insertion	gene	gene3560	http://www.ncbi.nlm.nih.gov/gene/?term=YE3603a
YE3604	YE3604	hybE	hybE	3927909	3928427	-	hydrogenase 2-specific chaperone	Similar to Escherichia coli hydrogenase-2 operon protein HybE SWALL:HYBE_ECOLI (SWALL:P37183) (162 aa) fasta scores: E(): 3.2e-22%2C 43.03 38d in 165 aa%2C and to Salmonella typhimurium putative hydrogenase STM3145 SWALL:Q8ZM18 (EMBL:AE008844) (162 aa) fasta scores: E(): 4.8e-24%2C 44.84 38d in 165 aa	gene	gene3561	http://www.ncbi.nlm.nih.gov/gene/?term=YE3604
YE3605	YE3605	hybD	hybD	3928420	3928911	-	hydrogenase 2 maturation endopeptidase	protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC)	gene	gene3562	http://www.ncbi.nlm.nih.gov/gene/?term=YE3605
YE3606	YE3606	hybC	hybC	3928911	3930605	-	hydrogenase 2 large subunit	involved in hydrogen uptake	gene	gene3563	http://www.ncbi.nlm.nih.gov/gene/?term=YE3606
YE3607	YE3607	hybB	hybB	3930583	3931776	-	hydrogenase 2 b cytochrome subunit	HybB%3B cytochrome b subunit of the hydrogenase 2 enzyme%2C composed of HybA%2C B%2C C%2C and O subunits	gene	gene3564	http://www.ncbi.nlm.nih.gov/gene/?term=YE3607
YE3608	YE3608	hybA	hybA	3931769	3932797	-	hydrogenase 2 protein HybA	Fe-S ferrodoxin type component%3B participates in the periplasmic electron-transferring activity of hydrogenase 2	gene	gene3565	http://www.ncbi.nlm.nih.gov/gene/?term=YE3608
YE3609	YE3609	hyb0	hyb0	3932800	3933915	-	hydrogenase 2 small subunit	involved in hydrogen uptake	gene	gene3566	http://www.ncbi.nlm.nih.gov/gene/?term=YE3609
YE3610	YE3610	pcpY2	pcpY2	3934620	3935087	+	outer membrane lipoprotein	Similar to Yersinia enterocolitica outer membrane lipoprotein precursor Pcp or PcpY SWALL:PCP_YEREN (SWALL:P31484) (155 aa) fasta scores: E(): 1.9e-34%2C 72.9 id in 155 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 outer membrane lipoprotein precursor SlyB SWALL:SLYB_ECOLI (SWALL:P55741) (155 aa) fasta scores: E(): 1.1e-30%2C 63.22 38d in 155 aa. Similar to YE2143%2C72.903 38dentity (72.9030ngapped) in 155 aa overlap%2C and to YE3819%2C 66.667 38dentity (67.0970ngapped) in 156 aa overlap	gene	gene3567	http://www.ncbi.nlm.nih.gov/gene/?term=YE3610
YE3610A	YE3610A		YE3610A	3935004	3935432	-			gene	gene3568	http://www.ncbi.nlm.nih.gov/gene/?term=YE3610A
YE3611	YE3611		YE3611	3935715	3936476	+			gene	gene3569	http://www.ncbi.nlm.nih.gov/gene/?term=YE3611
YE3612	YE3612	tpn1330	tpn1330	3936522	3937354	-			gene	gene3570	http://www.ncbi.nlm.nih.gov/gene/?term=YE3612
YE3614	YE3614		YE3614	3937695	3938543	-	lipase/acylhydrolase	C-terminal region is similar to the N-terminal region of Aeromonas hydrophila phosphatidylcholine-sterol acyltransferase precursor SWALL:GCAT_AERHY (SWALL:P10480) (335 aa) fasta scores: E(): 1.6e-15%2C 30.73 38d in 231 aa%2Cand an internal region of Salmonella typhimurium salmonella translocated effector: regulated by SPI-2 STM1631 SWALL:Q9FD10 (EMBL:AE008772) (408 aa) fasta scores: E(): 8.7e-29%2C 42.56 38d in 242 aa	gene	gene3571	http://www.ncbi.nlm.nih.gov/gene/?term=YE3614
YE3614A	YE3614A		YE3614A	3938771	3938881	-			gene	gene3572	http://www.ncbi.nlm.nih.gov/gene/?term=YE3614A
YE3615	YE3615		YE3615	3939448	3941022	-	methyl-accepting chemotaxis protein	Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 8.2e-65%2C 47.4 id in 521 aa%2C and to Salmonella typhimurium putative methyl-accepting chemotaxis protein STM3152 SWALL:Q8ZM14 (EMBL:AE008845) (547 aa) fasta scores: E(): 1.7e-82%2C50.86 38d in 519 aa. Similar to YE2971%2C 60.421 0dentity (60.53638ngapped) in 523 aa overlap	gene	gene3573	http://www.ncbi.nlm.nih.gov/gene/?term=YE3615
YE3616	YE3616		YE3616	3941617	3942600	-	hypothetical protein		gene	gene3574	http://www.ncbi.nlm.nih.gov/gene/?term=YE3616
YE3617	YE3617		YE3617	3942627	3943937	-	membrane transport protein		gene	gene3575	http://www.ncbi.nlm.nih.gov/gene/?term=YE3617
YE3618	YE3618	fepB	fepB	3944627	3945478	+	iron-enterobactin transporter substrate-binding protein	with FepCDG is involved in the transport of ferric enterobactin	gene	gene3576	http://www.ncbi.nlm.nih.gov/gene/?term=YE3618
YE3619	YE3619	fepD	fepD	3945828	3946898	+	iron-enterobactin transporter membrane protein	with FepBCG is involved in the transport of ferric enterobactin	gene	gene3577	http://www.ncbi.nlm.nih.gov/gene/?term=YE3619
YE3620	YE3620	fepG	fepG	3946895	3947938	+	iron-enterobactin transporter permease	with FepBCD is involved in the transport of ferric enterobactin	gene	gene3578	http://www.ncbi.nlm.nih.gov/gene/?term=YE3620
YE3621	YE3621	fepC	fepC	3947905	3948753	+	iron-siderophore ABC transporter ATP-binding protein		gene	gene3579	http://www.ncbi.nlm.nih.gov/gene/?term=YE3621
YE3622	YE3622	fes	fes	3948823	3950199	-	enterobactin/ferric enterobactin esterase	Similar to Erwinia chrysanthemi enterochelin esterase Fes SWALL:FES_ERWCH (SWALL:O51900) (434 aa) fasta scores: E(): 6.8e-75%2C 47.6 38d in 418 aa. Highly similar to Yersinia enterocolitica enterochelin esterase Fes SWALL:FES_YEREN (SWALL:Q56855) (353 aa) fasta scores: E(): 4.3e-128%2C 95.41 38d in 327 aa. This CDS differs from that previously sequenced in the very C-terminal region. Possible alternative translational start site at codon 8	gene	gene3580	http://www.ncbi.nlm.nih.gov/gene/?term=YE3622
YE3624	YE3624	fepA	fepA	3950648	3952799	+			gene	gene3581	http://www.ncbi.nlm.nih.gov/gene/?term=YE3624
YE3626	YE3626		YE3626	3953098	3953511	+	hypothetical protein	Poor database matches. Weakly similar to Ralstonia solanacearum hypothetical transmembrane protein RSP0925 or RS05408 SWALL:Q8XRD3 (EMBL:AL646081) (136 aa) fasta scores: E(): 8.3%2C 28.05 38d in 139 aa	gene	gene3582	http://www.ncbi.nlm.nih.gov/gene/?term=YE3626
YE3627	YE3627		YE3627	3953586	3953975	+	hypothetical protein	Weakly similar to Caulobacter crescentus hypothetical protein CC2017 SWALL:Q9A6R6 (EMBL:AE005875) (130 aa) fasta scores: E(): 0.0009%2C 27.77 38d in 108 aa%2Cand to Escherichia coli hypothetical protein CusX or b0573 SWALL:CUSX_ECOLI (SWALL:P77214) (110 aa) fasta scores: E(): 0.038%2C 28.88 38d in 90 aa	gene	gene3583	http://www.ncbi.nlm.nih.gov/gene/?term=YE3627
YE3628	YE3628		YE3628	3953989	3955287	+	outer membrane efflux protein	Similar to Alcaligenes eutrophus nickel and cobalt resistance protein precursor CnrC SWALL:CNRC_ALCEU (SWALL:P37974) (418 aa) fasta scores: E(): 2.6e-05%2C 25.65 id in 421 aa%2C and to Ralstonia solanacearum putative outer membrane cation efflux protein RSP0926 or RS05407 SWALL:Q8XRD2 (EMBL:AL646081) (434 aa) fasta scores: E(): 5.5e-26%2C 28.15 38d in 412 aa	gene	gene3584	http://www.ncbi.nlm.nih.gov/gene/?term=YE3628
YE3629	YE3629		YE3629	3955284	3956813	+	efflux system protein	N-terminal region is similar to Escherichia coli putative copper efflux system protein CusB SWALL:CUSB_ECOLI (SWALL:P77239) (407 aa) fasta scores: E(): 1e-48%2C 39.85 38d in 399 aa. Full length CDS is similar to Ralstonia solanacearum putative cation efflux system transmembrane protein RSP0927 or RS05406 SWALL:Q8XRD1 (EMBL:AL646081) (513 aa) fasta scores: E(): 7.4e-62%2C 40.35 38d in 513 aa	gene	gene3585	http://www.ncbi.nlm.nih.gov/gene/?term=YE3629
YE3630	YE3630		YE3630	3956810	3959941	+	cation efflux system protein	Similar to Escherichia coli putative cation efflux system protein CusA SWALL:CUSA_ECOLI (SWALL:P38054) (1047 aa) fasta scores: E(): 0%2C 64.39 38d in 1042 aa%2C and to Ralstonia solanacearum probable cation efflux system transmembrane protein RSP0928 or RS05405 SWALL:Q8XRD0 (EMBL:AL646081) (1047 aa) fasta scores: E(): 0%2C 68.81 38d in 1039 aa	gene	gene3586	http://www.ncbi.nlm.nih.gov/gene/?term=YE3630
YE3631	YE3631	aidD	aidD	3960008	3960673	-	alkylated DNA repair protein	Similar to Escherichia coli alkylated DNA repair protein AlkB or AidD SWALL:ALKB_ECOLI (SWALL:P05050) (216 aa) fasta scores: E(): 9.3e-53%2C 61.29 38d in 217 aa%2C and to Salmonella typhimurium alkylated DNA repair protein STM2264 SWALL:ALKB_SALTY (SWALL:P37462) (216 aa) fasta scores: E(): 2e-53%2C 61.29 38d in 217 aa	gene	gene3587	http://www.ncbi.nlm.nih.gov/gene/?term=YE3631
YE3632	YE3632		YE3632	3961220	3961819	+	membrane protein	Poor database matches. N-terminus is similar to the N-terminal regions of Yersinia enterocolitica hypothetical protein Orf1 SWALL:Q9KKJ0 (EMBL:AF005744) (161 aa) fasta scores: E(): 1.1e-06%2C 37.14 38d in 105 aa%2C and Salmonella typhimurium putative inner membrane protein STM0341 SWALL:Q8ZRH8 (EMBL:AE008710) (254 aa) fasta scores: E(): 2.2e-05%2C 33.96 38d in 106 aa	gene	gene3588	http://www.ncbi.nlm.nih.gov/gene/?term=YE3632
YE3633	YE3633	flp	flp	3962020	3962214	+	pilin protein%2C major subunit	Similar to Ralstonia solanacearum putative pilin protein RSP1092 or RS02598 SWALL:Q8XQX6 (EMBL:AL646082) (58 aa) fasta scores: E(): 4.4%2C 33.33 38d in 48 aa%2C and to Pasteurella multocida hypothetical protein PM0855 SWALL:Q9CMH1 (EMBL:AE006124) (74 aa) fasta scores: E(): 4.5%2C 43.9 38d in 41 aa	gene	gene3589	http://www.ncbi.nlm.nih.gov/gene/?term=YE3633
YE3634	YE3634	tadV	tadV	3962286	3962708	+	tight adherance operon protein		gene	gene3590	http://www.ncbi.nlm.nih.gov/gene/?term=YE3634
YE3635	YE3635	rcpC	rcpC	3962753	3963586	+	tight adherance operon protein		gene	gene3591	http://www.ncbi.nlm.nih.gov/gene/?term=YE3635
YE3636	YE3636	rcpA	rcpA	3963583	3964944	+	tight adherance operon protein	Similar to Actinobacillus actinomycetemcomitans rough colony protein A rcpA SWALL:Q9X6J1 (EMBL:AF139249) (460 aa) fasta scores: E(): 1e-44%2C 39.46 38d in 446 aa%2Cand to Pasteurella multocida putative rough colony protein A PM0852 SWALL:Q9CMH4 (EMBL:AE006123) (470 aa) fasta scores: E(): 4.2e-38%2C 40.73 38d in 437 aa	gene	gene3592	http://www.ncbi.nlm.nih.gov/gene/?term=YE3636
YE3637	YE3637	tadZ	tadZ	3965213	3966331	+	tight adherance operon protein		gene	gene3593	http://www.ncbi.nlm.nih.gov/gene/?term=YE3637
YE3638	YE3638	tadA	tadA	3966363	3967637	+	tight adherance operon protein		gene	gene3594	http://www.ncbi.nlm.nih.gov/gene/?term=YE3638
YE3639	YE3639	tadB	tadB	3967673	3968515	+	tight adherance operon protein		gene	gene3595	http://www.ncbi.nlm.nih.gov/gene/?term=YE3639
YE3640	YE3640	tadC	tadC	3968512	3969336	+	tight adherance operon protein		gene	gene3596	http://www.ncbi.nlm.nih.gov/gene/?term=YE3640
YE3641	YE3641	tadD	tadD	3969323	3970090	+	tight adherance operon protein		gene	gene3597	http://www.ncbi.nlm.nih.gov/gene/?term=YE3641
YE3642	YE3642	tadE	tadE	3970095	3970559	+	tight adherance operon protein		gene	gene3598	http://www.ncbi.nlm.nih.gov/gene/?term=YE3642
YE3643	YE3643	tadF	tadF	3970543	3971121	+	tight adherance operon protein		gene	gene3599	http://www.ncbi.nlm.nih.gov/gene/?term=YE3643
YE3644	YE3644	tadG	tadG	3971157	3972536	+	tight adherance operon protein		gene	gene3600	http://www.ncbi.nlm.nih.gov/gene/?term=YE3644
YE3645	YE3645		YE3645	3972581	3973006	-	biopolymer transport protein ExbD	membrane spanning protein in TonB-ExbB-ExbD complex%3B involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell	gene	gene3601	http://www.ncbi.nlm.nih.gov/gene/?term=YE3645
YE3646	YE3646		YE3646	3973010	3974020	-	MotA/TolQ/ExbB proton channel family protein		gene	gene3602	http://www.ncbi.nlm.nih.gov/gene/?term=YE3646
YE3647	YE3647	metC	metC	3974502	3975713	+	cystathionine beta-lyase	catalyzes the formation of L-homocysteine from cystathionine	gene	gene3603	http://www.ncbi.nlm.nih.gov/gene/?term=YE3647
YE3648	YE3648		YE3648	3975920	3976582	+	DedA family membrane protein		gene	gene3604	http://www.ncbi.nlm.nih.gov/gene/?term=YE3648
YE3649	YE3649		YE3649	3976641	3977534	-	AraC family transcription regulator		gene	gene3605	http://www.ncbi.nlm.nih.gov/gene/?term=YE3649
YE3650	YE3650		YE3650	3977977	3980016	+	hypothetical protein	Weakly similar to Enterococcus faecalis V583 cell wall surface anchor family protein SWALL:AAO79968 (EMBL:AE016947) (1055 aa) fasta scores: E(): 4e-10%2C 22.4 id in 616 aa	gene	gene3606	http://www.ncbi.nlm.nih.gov/gene/?term=YE3650
YE3651	YE3651		YE3651	3980364	3981521	+	iron-containing alcohol dehydrogenase		gene	gene3607	http://www.ncbi.nlm.nih.gov/gene/?term=YE3651
YE3652	YE3652	dkgA	dkgA	3981740	3982573	+	2%2C5-diketo-D-gluconate reductase A	methylglyoxal reductase/#-keto ester reductase%3B catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid%3B also catalyzes the reduction of methylglyoxal%2C ethyl-2-methylacetoacetate and ethyl-acetoacetate	gene	gene3608	http://www.ncbi.nlm.nih.gov/gene/?term=YE3652
YE3653	YE3653		YE3653	3982575	3984878	-	hypothetical protein	Similar to Salmonella typhimurium putative Fe-S oxidoreductase family 2 STM3168 SWALL:Q8ZM03 (EMBL:AE008845) (723 aa) fasta scores: E(): 0%2C 83.44 38d in 719 aa%2C and to Escherichia coli O157:H7 hypothetical protein Z4370 SWALL:Q8XBS7 (EMBL:AE005531) (739 aa) fasta scores: E(): 0%2C 81.4 38d in 742 aa. CDS is extended at the C-terminus in comparison to orthologues	gene	gene3609	http://www.ncbi.nlm.nih.gov/gene/?term=YE3653
YE3654	YE3654	sufI	sufI	3985062	3986489	-	repressor protein for FtsI		gene	gene3610	http://www.ncbi.nlm.nih.gov/gene/?term=YE3654
YE3655	YE3655	parF	parF	3986652	3987383	-	acyltransferase		gene	gene3611	http://www.ncbi.nlm.nih.gov/gene/?term=YE3655
YE3656	YE3656	parC	parC	3987565	3989841	-	DNA topoisomerase IV subunit A	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling	gene	gene3612	http://www.ncbi.nlm.nih.gov/gene/?term=YE3656
YE3657	YE3657	mda66	mda66	3990153	3990746	+	modulator of drug activity		gene	gene3613	http://www.ncbi.nlm.nih.gov/gene/?term=YE3657
YE3658	YE3658		YE3658	3990779	3991084	+	hypothetical protein	Similar to Salmonella typhimurium%2C and Salmonella typhi putative cytoplasmic protein STM3180 or STY3358 SWALL:Q8XFF1 (EMBL:AE008846) (104 aa) fasta scores: E(): 6.2e-19%2C 52.94 38d in 102 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YgiN SWALL:YGIN_ECOLI (SWALL:P40718) (104 aa) fasta scores: E(): 1.2e-18%2C 52 38d in 100 aa	gene	gene3614	http://www.ncbi.nlm.nih.gov/gene/?term=YE3658
YE3659	YE3659	crgA	crgA	3991110	3992027	-	LysR family regulatory protein		gene	gene3615	http://www.ncbi.nlm.nih.gov/gene/?term=YE3659
YE3660	YE3660	nfxD	nfxD	3992048	3993943	-	DNA topoisomerase IV subunit B	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling	gene	gene3616	http://www.ncbi.nlm.nih.gov/gene/?term=YE3660
YE3661	YE3661		YE3661	3994058	3994642	-	esterase YqiA	Displays esterase activity toward palmitoyl-CoA and pNP-butyrate	gene	gene3617	http://www.ncbi.nlm.nih.gov/gene/?term=YE3661
YE3662	YE3662	icc	icc	3994639	3995466	-	cyclic 3'%2C5'-adenosine monophosphate phosphodiesterase		gene	gene3618	http://www.ncbi.nlm.nih.gov/gene/?term=YE3662
YE3663	YE3663		YE3663	3995546	3995971	-	hypothetical protein		gene	gene3619	http://www.ncbi.nlm.nih.gov/gene/?term=YE3663
YE3664	YE3664	nudF	nudF	3995983	3996615	-	ADP-ribose pyrophosphatase NudF	ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose	gene	gene3620	http://www.ncbi.nlm.nih.gov/gene/?term=YE3664
YE3665	YE3665	tolC	tolC	3996933	3998414	+	outer membrane channel protein	trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules%3B functions with a number of efflux systems in the inner membrane to transport molecules out of the cell	gene	gene3621	http://www.ncbi.nlm.nih.gov/gene/?term=YE3665
YE3666	YE3666		YE3666	3998660	3999349	+	hypothetical protein		gene	gene3622	http://www.ncbi.nlm.nih.gov/gene/?term=YE3666
YE3667	YE3667		YE3667	3999360	4000520	+	hypothetical protein		gene	gene3623	http://www.ncbi.nlm.nih.gov/gene/?term=YE3667
YE3668	YE3668		YE3668	4000693	4001475	-	hypothetical protein	seems to be involved in biofilm formation%3B in asymptomatic bacteriuria E. coli strains 83972 and VR50%2C the ygiD gene is upregulated during biofilm formation in urine	gene	gene3624	http://www.ncbi.nlm.nih.gov/gene/?term=YE3668
YE3669	YE3669	ribB	ribB	4001890	4002543	-	3%2C4-dihydroxy-2-butanone 4-phosphate synthase	DHBP synthase%3B functions during riboflavin biosynthesis	gene	gene3625	http://www.ncbi.nlm.nih.gov/gene/?term=YE3669
YE3671	YE3671		YE3671	4003009	4003308	+	hypothetical protein		gene	gene3627	http://www.ncbi.nlm.nih.gov/gene/?term=YE3671
YE3672	YE3672	asoB	asoB	4003352	4004596	-	inner membrane protein YjeH	uncharacterized member of the APC superfamily of amino acid transporters%3B unknown function	gene	gene3628	http://www.ncbi.nlm.nih.gov/gene/?term=YE3672
YE3673	YE3673	rfaE	rfaE	4004749	4006179	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D%2CD-heptose-1%2C7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D%2CD-heptose	gene	gene3629	http://www.ncbi.nlm.nih.gov/gene/?term=YE3673
YE3674	YE3674	glnE	glnE	4006430	4009282	-	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase%3B also catalyzes the reverse reaction - deadenylation%3B adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme	gene	gene3630	http://www.ncbi.nlm.nih.gov/gene/?term=YE3674
YE3675	YE3675		YE3675	4009427	4010752	-	hypothetical protein		gene	gene3631	http://www.ncbi.nlm.nih.gov/gene/?term=YE3675
YE3676	YE3676		YE3676	4011077	4011697	+	signal transduction protein		gene	gene3632	http://www.ncbi.nlm.nih.gov/gene/?term=YE3676
YE3677	YE3677	cca	cca	4011864	4013108	+	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template%3B phosphohydrolase activities include hydrolysis of pyrophosphate%2C 5'-nucleoside tri- and diphosphates%2C NADP%2C and 2'-AMP with the production of Pi%2C metal-dependent phosphodiesterase activity for 2'%2C3'-cAMP%2C 2'%2C3'-cGMP%2C and 2'%2C3'-cCMP%2C and hydrolysis 2'%2C3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides%3B these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases	gene	gene3633	http://www.ncbi.nlm.nih.gov/gene/?term=YE3677
YE3678	YE3678	bacA	bacA	4013298	4014116	-	undecaprenyl pyrophosphate phosphatase	BacA%3B phosphatase activity in Escherichia coli not kinase%3B involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell	gene	gene3634	http://www.ncbi.nlm.nih.gov/gene/?term=YE3678
YE3679	YE3679	folB	folB	4014278	4014637	-	bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase	catalyzes the conversion of 7%2C8-dihydroneopterin to 6-hydroxymethyl-7%2C8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin	gene	gene3635	http://www.ncbi.nlm.nih.gov/gene/?term=YE3679
YE3680	YE3680		YE3680	4014745	4015398	+	glycerol-3-phosphate acyltransferase PlsY	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsX	gene	gene3636	http://www.ncbi.nlm.nih.gov/gene/?term=YE3680
YE3681	YE3681	gcp	gcp	4015553	4016566	-	DNA-binding/iron metalloprotein/AP endonuclease	in most organisms%2C only the N-terminal domain is present in a single polypeptide%3B in some archaea this domain is fused to a kinase domain%3B this gene is essential for growth in Escherichia coli and Bacillus subtilis%3B the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins%3B the Pyrococcus structure shows DNA-binding properties%2C iron-binding%2C ATP-binding%2C and AP endonuclease activity	gene	gene3637	http://www.ncbi.nlm.nih.gov/gene/?term=YE3681
YE3682	YE3682	rpsU	rpsU	4016940	4017155	+	30S ribosomal protein S21	a small basic protein that is one of the last in the subunit assembly%3B omission does not prevent assembly but the subunit is inactive%3B binds central domain of 16S rRNA	gene	gene3638	http://www.ncbi.nlm.nih.gov/gene/?term=YE3682
YE3683	YE3683	dnaG	dnaG	4017292	4019040	+	DNA primase	synthesizes RNA primers at the replication forks	gene	gene3639	http://www.ncbi.nlm.nih.gov/gene/?term=YE3683
YE3684	YE3684	alt	alt	4019198	4021036	+	RNA polymerase sigma factor RpoD	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this is the primary sigma factor of bacteria	gene	gene3640	http://www.ncbi.nlm.nih.gov/gene/?term=YE3684
YE3685	YE3685		YE3685	4021463	4022794	-	hypothetical protein	Similar to the N-terminal region of Oceanobacillus iheyensis hypothetical conserved protein OB1304 SWALL:BAC13260 (EMBL:AP004597) (509 aa) fasta scores: E(): 1.1e-20%2C 31.22 38d in 442 aa. N-terminus is similar to the N-terminal region of Bacillus halodurans hypothetical protein BH0674 SWALL:Q9KF23 (EMBL:AP001509) (418 aa) fasta scores: E(): 1.6e-19%2C 35.96 38d in 317 aa	gene	gene3642	http://www.ncbi.nlm.nih.gov/gene/?term=YE3685
YE3686	YE3686		YE3686	4022847	4023932	-	hypothetical protein		gene	gene3643	http://www.ncbi.nlm.nih.gov/gene/?term=YE3686
YE3687	YE3687		YE3687	4023950	4025827	-	glycosyl hydrolase family protein	Similar to Alteromonas sp. beta-hexosaminidase A precursor Cht60 SWALL:HEXA_ALTSO (SWALL:P48823) (598 aa) fasta scores: E(): 3.9e-38%2C 32.65 38d in 594 aa%2C and to Thermoanaerobacter tengcongensis beta-glucosidase-related glycosidases TTE0241 SWALL:Q8RD12 (EMBL:AE012996) (591 aa) fasta scores: E(): 8.3e-52%2C 36.15 38d in 639 aa	gene	gene3644	http://www.ncbi.nlm.nih.gov/gene/?term=YE3687
YE3688	YE3688		YE3688	4026155	4027015	-	transcriptional regulator	Similar to Vibrio cholerae hypothetical protein VC0204 SWALL:Q9KVE2 (EMBL:AE004110) (282 aa) fasta scores: E(): 1.7e-38%2C 45.07 38d in 284 aa%2C and to Escherichia coli als operon repressor RpiR or AlsR SWALL:RPIR_ECOLI (SWALL:P39266) (296 aa) fasta scores: E(): 2.8e-14%2C 28.01 id in 257 aa	gene	gene3645	http://www.ncbi.nlm.nih.gov/gene/?term=YE3688
YE3689	YE3689	murQ	murQ	4027243	4028151	+	N-acetylmuramic acid 6-phosphate etherase	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway	gene	gene3646	http://www.ncbi.nlm.nih.gov/gene/?term=YE3689
YE3690	YE3690	murP	murP	4028154	4029605	+	PTS system N-acetylmuramic acid transporter subunit IIBC	belongs to PEP-dependent PTS system%3B contains the PTS EIIBC domains%3B involved in uptake of exogenous N-acetylmuramic acid (MurNAc)%3B requires crr-encoded enzyme IIA-glucose component	gene	gene3647	http://www.ncbi.nlm.nih.gov/gene/?term=YE3690
YE3691	YE3691		YE3691	4029655	4030596	-	glutaminase	catalyzes the formation of glutamate from glutamine	gene	gene3648	http://www.ncbi.nlm.nih.gov/gene/?term=YE3691
YE3692	YE3692		YE3692	4030666	4032222	-	amino acid permease	Similar to Brucella melitensis glutamate/gamma-aminobutyrate antiporter BMEII0909 SWALL:Q8YBJ1 (EMBL:AE009724) (510 aa) fasta scores: E(): 5.6e-127%2C 63.45 38d in 498 aa%2C and to Chlamydia muridarum amino acid antiporter TC0488 SWALL:Q9PKH7 (EMBL:AE002317) (466 aa) fasta scores: E(): 1.2e-53%2C 35.03 38d in 471 aa. CDS is extended at the C-terminus in comparison to some orthologues	gene	gene3649	http://www.ncbi.nlm.nih.gov/gene/?term=YE3692
YE3693	YE3693	gadA	gadA	4032296	4033696	-	glutamate decarboxylase	Similar to Escherichia coli glutamate decarboxylase alpha GadA or GadS SWALL:DCEA_ECOLI (SWALL:P80063) (466 aa) fasta scores: E(): 2.1e-172%2C 82.61 38d in 466 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 glutamate decarboxylase beta GadB SWALL:DCEB_ECOLI (SWALL:P28302) (466 aa) fasta scores: E(): 7e-172%2C 82.18 id in 466 aa	gene	gene3650	http://www.ncbi.nlm.nih.gov/gene/?term=YE3693
YE3694	YE3694		YE3694	4034021	4034479	-	transcriptional regulator	Similar to Pseudomonas aeruginosa hypothetical protein PA1607 SWALL:Q9I3B4 (EMBL:AE004588) (146 aa) fasta scores: E(): 2.9e-28%2C 53.84 38d in 143 aa. C-terminal region in similar to Rhizobium meliloti hypothetical protein RA1074 or SMA1960 SWALL:Q92Y14 (EMBL:AE007293) (125 aa) fasta scores: E(): 2.2e-20%2C 51.3 38d in 115 aa	gene	gene3651	http://www.ncbi.nlm.nih.gov/gene/?term=YE3694
YE3695	YE3695		YE3695	4034588	4035826	+	transporter protein	Similar to Yersinia pestis probable sugar transporter YPO3263 SWALL:Q8ZBX1 (EMBL:AJ414156) (399 aa) fasta scores: E(): 1.7e-63%2C 45.59 38d in 386 aa%2C and to the C-terminal region of Rhizobium meliloti hypothetical protein RA1073 or SMA1959 SWALL:Q92Y15 (EMBL:AE007293) (469 aa) fasta scores: E(): 7.2e-71%2C 54.02 38d in 385 aa	gene	gene3652	http://www.ncbi.nlm.nih.gov/gene/?term=YE3695
YE3696	YE3696		YE3696	4035918	4036490	+	acid-resistance membrane protein		gene	gene3653	http://www.ncbi.nlm.nih.gov/gene/?term=YE3696
YE3697	YE3697		YE3697	4036643	4037542	+	hypothetical protein	Similar to Salmonella typhi putative membrane protein STY1543 SWALL:Q8Z701 (EMBL:AL627270) (300 aa) fasta scores: E(): 1.4e-32%2C 37.45 38d in 291 aa. Weakly similar to Erwinia chrysanthemi protein involved in the pectate lyase and cellulase regulation PecM SWALL:PECM_ERWCH (SWALL:P42194) (297 aa) fasta scores: E(): 1.6e-06%2C 23.05 38d in 308 aa	gene	gene3654	http://www.ncbi.nlm.nih.gov/gene/?term=YE3697
YE3698	YE3698	fadH	fadH	4037692	4039713	+	2%2C4-dienoyl-CoA reductase		gene	gene3655	http://www.ncbi.nlm.nih.gov/gene/?term=YE3698
YE3699	YE3699		YE3699	4039979	4041169	-	methyltransferase		gene	gene3656	http://www.ncbi.nlm.nih.gov/gene/?term=YE3699
YE3700	YE3700		YE3700	4041668	4043575	+	beta-barrel outer membrane protein	N-terminus has no significant hits in the databases. C-terminus similar to Yersinia pestis YapG putative autotransporter protein or ypo0587 SWALL:Q9F286 (EMBL:AJ277630) (994 aa) fasta scores: E(): 1.5e-41%2C34.01 38d in 441 aa%2C and to Escherichia coli O157:H7 putative beta-barrel outer membrane protein z0402 or ecs0362 SWALL:Q8X6C1 (EMBL:AE005210) (1349 aa) fasta scores: E(): 1.1e-39%2C 35.93 38d in 359 aa	gene	gene3657	http://www.ncbi.nlm.nih.gov/gene/?term=YE3700
YE3701	YE3701		YE3701	4043817	4044320	+	hypothetical protein		gene	gene3658	http://www.ncbi.nlm.nih.gov/gene/?term=YE3701
YE3702	YE3702		YE3702	4044392	4045393	+	MocA family oxidoreductase		gene	gene3659	http://www.ncbi.nlm.nih.gov/gene/?term=YE3702
YE3703	YE3703		YE3703	4045743	4046729	+	drug efflux protein		gene	gene3661	http://www.ncbi.nlm.nih.gov/gene/?term=YE3703
YE3704	YE3704		YE3704	4047047	4048303	+	serine/threonine transporter SstT	involved in the import of serine and threonine coupled with the import of sodium	gene	gene3662	http://www.ncbi.nlm.nih.gov/gene/?term=YE3704
YE3705	YE3705		YE3705	4048353	4048889	-	hypothetical protein		gene	gene3663	http://www.ncbi.nlm.nih.gov/gene/?term=YE3705
YE3706	YE3706	uxaA	uxaA	4049059	4050549	-	altronate hydrolase		gene	gene3664	http://www.ncbi.nlm.nih.gov/gene/?term=YE3706
YE3707	YE3707	uxaB	uxaB	4050560	4052011	-	altronate oxidoreductase	catalyzes the formation of D-tagaturonate from D-altronate	gene	gene3665	http://www.ncbi.nlm.nih.gov/gene/?term=YE3707
YE3708	YE3708	uxaC	uxaC	4052133	4053542	-	glucuronate isomerase	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate%3B functions in glucuronic and galacturonic metabolism	gene	gene3666	http://www.ncbi.nlm.nih.gov/gene/?term=YE3708
YE3709	YE3709	exuT	exuT	4054068	4055372	+	ExuT transport protein		gene	gene3667	http://www.ncbi.nlm.nih.gov/gene/?term=YE3709
YE3710	YE3710	exuR	exuR	4055612	4056406	+	DNA-binding transcriptional repressor ExuR	regulates the exuT%2C uxaCA and uxuRAB operons which encode genes involved in hexuronate utilization.	gene	gene3668	http://www.ncbi.nlm.nih.gov/gene/?term=YE3710
YE3711	YE3711		YE3711	4056638	4057153	+	lipoprotein		gene	gene3669	http://www.ncbi.nlm.nih.gov/gene/?term=YE3711
YE3712	YE3712	yqjA	yqjA	4057347	4058039	+	DedA family membrane protein		gene	gene3670	http://www.ncbi.nlm.nih.gov/gene/?term=YE3712
YE3713	YE3713		YE3713	4058036	4058425	+	hypothetical protein		gene	gene3671	http://www.ncbi.nlm.nih.gov/gene/?term=YE3713
YE3714	YE3714		YE3714	4058665	4058997	+	hypothetical protein		gene	gene3672	http://www.ncbi.nlm.nih.gov/gene/?term=YE3714
YE3715	YE3715	yqjD	yqjD	4059122	4059427	+	hypothetical protein		gene	gene3673	http://www.ncbi.nlm.nih.gov/gene/?term=YE3715
YE3716	YE3716		YE3716	4059430	4059825	+	hypothetical protein		gene	gene3674	http://www.ncbi.nlm.nih.gov/gene/?term=YE3716
YE3717	YE3717		YE3717	4059822	4060106	+	hypothetical protein		gene	gene3675	http://www.ncbi.nlm.nih.gov/gene/?term=YE3717
YE3718	YE3718		YE3718	4060558	4060926	+	hypothetical protein		gene	gene3676	http://www.ncbi.nlm.nih.gov/gene/?term=YE3718
YE3719	YE3719		YE3719	4061010	4062008	+	hypothetical protein		gene	gene3677	http://www.ncbi.nlm.nih.gov/gene/?term=YE3719
YE3720	YE3720		YE3720	4062156	4063052	-	LysR family transcriptional regulator		gene	gene3678	http://www.ncbi.nlm.nih.gov/gene/?term=YE3720
YE3721	YE3721		YE3721	4063168	4063872	+	hypothetical protein		gene	gene3679	http://www.ncbi.nlm.nih.gov/gene/?term=YE3721
YE3722	YE3722		YE3722	4063938	4064993	-	NADP-dependent alcohol dehydrogenase	Similar to Ralstonia solanacearum putative NADP-dependent alcohol dehydrogenase protein Rsc0632 or rs01534 SWALL:Q8Y1Q7 (EMBL:AL646060) (352 aa) fasta scores: E(): 1e-95%2C 67.62 38d in 349 aa%2C and to Pseudomonas aeruginosa probable alcohol dehydrogenase pa2275 SWALL:Q9I1J9 (EMBL:AE004653) (353 aa) fasta scores: E(): 7.3e-95%2C 68.28 38d in 350 aa%2C and to Xylella fastidiosa NADP-alcohol dehydrogenase xf1734 SWALL:Q9PCP4 (EMBL:AE003996) (348 aa) fasta scores: E(): 2.1e-93%2C67.62 38d in 349 aa	gene	gene3680	http://www.ncbi.nlm.nih.gov/gene/?term=YE3722
YE3723	YE3723		YE3723	4065125	4066120	-	aldo/keto reductase		gene	gene3681	http://www.ncbi.nlm.nih.gov/gene/?term=YE3723
YE3724	YE3724		YE3724	4066304	4067197	+	LysR family transcriptional regulator		gene	gene3682	http://www.ncbi.nlm.nih.gov/gene/?term=YE3724
YE3726	YE3726		YE3726	4067751	4068650	-	tetrapyrrole methylase		gene	gene3684	http://www.ncbi.nlm.nih.gov/gene/?term=YE3726
YE3727	YE3727		YE3727	4068713	4070686	+	hypothetical protein		gene	gene3685	http://www.ncbi.nlm.nih.gov/gene/?term=YE3727
YE3728	YE3728		YE3728	4070730	4071083	+	hypothetical protein		gene	gene3686	http://www.ncbi.nlm.nih.gov/gene/?term=YE3728
YE3729	YE3729		YE3729	4071139	4071729	+	DnaA initiator-associating protein DiaA	Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein	gene	gene3687	http://www.ncbi.nlm.nih.gov/gene/?term=YE3729
YE3730	YE3730		YE3730	4071740	4072315	+	hypothetical protein		gene	gene3688	http://www.ncbi.nlm.nih.gov/gene/?term=YE3730
YE3731	YE3731	mtgA	mtgA	4072396	4073121	-	monofunctional biosynthetic peptidoglycan transglycosylase	glycosyltransferase%3B polymerizes glycan strands in the peptidoglycan	gene	gene3689	http://www.ncbi.nlm.nih.gov/gene/?term=YE3731
YE3732	YE3732	elb2	elb2	4073118	4073771	-	isoprenoid biosynthesis protein with amidotransferase-like domain		gene	gene3690	http://www.ncbi.nlm.nih.gov/gene/?term=YE3732
YE3733	YE3733	arcB	arcB	4074154	4076490	-	aerobic respiration control sensor protein ArcB	sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon%3B hybrid sensory histidine kinase in two-component regulatory system with ArcA	gene	gene3691	http://www.ncbi.nlm.nih.gov/gene/?term=YE3733
YE3734	YE3734		YE3734	4076786	4077688	-	hypothetical protein		gene	gene3692	http://www.ncbi.nlm.nih.gov/gene/?term=YE3734
YE3735	YE3735	gltB	gltB	4078236	4082846	+	glutamate synthase subunit alpha	catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate	gene	gene3693	http://www.ncbi.nlm.nih.gov/gene/?term=YE3735
YE3736	YE3736	gltD	gltD	4082856	4084274	+	glutamate synthase subunit beta	glutamate synthase is composed of subunits alpha and beta%3B beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase%3B provides electrons to the alpha subunit%2C which binds L-glutamine and 2-oxoglutarate and forms L-glutamate	gene	gene3694	http://www.ncbi.nlm.nih.gov/gene/?term=YE3736
YE3737	YE3737		YE3737	4084540	4085025	+	hypothetical protein		gene	gene3695	http://www.ncbi.nlm.nih.gov/gene/?term=YE3737
YE3738	YE3738	sspB	sspB	4085110	4085625	-	ClpXP protease specificity-enhancing factor		gene	gene3696	http://www.ncbi.nlm.nih.gov/gene/?term=YE3738
YE3739	YE3739	sspA	sspA	4085631	4086272	-	stringent starvation protein A	transcriptional activator%3B required for activation of bacteriophage P1 late promoter%3B induced by starvation	gene	gene3697	http://www.ncbi.nlm.nih.gov/gene/?term=YE3739
YE3740	YE3740	rpsI	rpsI	4086667	4087059	-	30S ribosomal protein S9	forms a direct contact with the tRNA during translation	gene	gene3698	http://www.ncbi.nlm.nih.gov/gene/?term=YE3740
YE3741	YE3741	rplM	rplM	4087074	4087502	-	50S ribosomal protein L13	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit	gene	gene3699	http://www.ncbi.nlm.nih.gov/gene/?term=YE3741
YE3742	YE3742		YE3742	4087835	4088962	-	hypothetical protein		gene	gene3700	http://www.ncbi.nlm.nih.gov/gene/?term=YE3742
YE3743	YE3743		YE3743	4089186	4089590	+	cytochrome d ubiquinol oxidase subunit III		gene	gene3701	http://www.ncbi.nlm.nih.gov/gene/?term=YE3743
YE3744	YE3744	degQ	degQ	4089861	4091234	+	protease		gene	gene3702	http://www.ncbi.nlm.nih.gov/gene/?term=YE3744
YE3745	YE3745	degS	degS	4091323	4092411	+	serine endoprotease		gene	gene3703	http://www.ncbi.nlm.nih.gov/gene/?term=YE3745
YE3746	YE3746	murA	murA	4092490	4093758	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation%3B gram-positive bacteria have 2 copies of MurA which are active	gene	gene3704	http://www.ncbi.nlm.nih.gov/gene/?term=YE3746
YE3747	YE3747		YE3747	4093880	4094143	-	BolA-like protein		gene	gene3705	http://www.ncbi.nlm.nih.gov/gene/?term=YE3747
YE3748	YE3748		YE3748	4094309	4094632	-	anti-sigma B factor antagonist		gene	gene3706	http://www.ncbi.nlm.nih.gov/gene/?term=YE3748
YE3749	YE3749	yrbC	yrbC	4094635	4095261	-	hypothetical protein		gene	gene3707	http://www.ncbi.nlm.nih.gov/gene/?term=YE3749
YE3750	YE3750	yrbD	yrbD	4095274	4095834	-	hypothetical protein		gene	gene3708	http://www.ncbi.nlm.nih.gov/gene/?term=YE3750
YE3751	YE3751	yrbE	yrbE	4095839	4096621	-	hypothetical protein		gene	gene3709	http://www.ncbi.nlm.nih.gov/gene/?term=YE3751
YE3752	YE3752	yrbF	yrbF	4096636	4097418	-	ABC transporter ATP-binding protein YrbF	ATP-binding subunit of a putative ABC toluene efflux transporter	gene	gene3710	http://www.ncbi.nlm.nih.gov/gene/?term=YE3752
YE3753	YE3753	yrbG	yrbG	4097845	4098819	+	calcium/sodium:proton antiporter	YrbG%3B inner membrane protein involved in cell envelope integrity%3B putative sodium ion/calcium ion exchanger%3B in E. coli it is non essential for cell viability%3B member of the YRBG family of cation/Ca2+ exchangers	gene	gene3711	http://www.ncbi.nlm.nih.gov/gene/?term=YE3753
YE3754	YE3754		YE3754	4098877	4099854	+	D-arabinose 5-phosphate isomerase		gene	gene3712	http://www.ncbi.nlm.nih.gov/gene/?term=YE3754
YE3755	YE3755		YE3755	4099868	4100431	+	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	forms homotetramers%3B catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate%3B functions in lipopolysaccharide biosynthesis	gene	gene3713	http://www.ncbi.nlm.nih.gov/gene/?term=YE3755
YE3756	YE3756	yrbK	yrbK	4100428	4100991	+	hypothetical protein		gene	gene3714	http://www.ncbi.nlm.nih.gov/gene/?term=YE3756
YE3757	YE3757		YE3757	4100975	4101520	+	lipopolysaccharide transport periplasmic protein LptA	LptA%3B periplasmic binding protein part of a putative ABC superfamily of uptake transporters%3B interacts with LptB protein%2C the ATP binding component of the uptake system	gene	gene3715	http://www.ncbi.nlm.nih.gov/gene/?term=YE3757
YE3758	YE3758	yhbG	yhbG	4101527	4102252	+	ABC transporter ATP-binding protein YhbG		gene	gene3716	http://www.ncbi.nlm.nih.gov/gene/?term=YE3758
YE3759	YE3759	glnF	glnF	4102315	4103748	+	RNA polymerase factor sigma-54	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism%3B the rhizobia often have 2 copies of this sigma factor%3B in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation%3B in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions%2C rpoN1 gene was regulated in response to oxygen	gene	gene3717	http://www.ncbi.nlm.nih.gov/gene/?term=YE3759
YE3760	YE3760	yhbH	yhbH	4103772	4104059	+	sigma(54) modulation protein	YhbH%3B resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase%3B binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization)%3B seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing	gene	gene3718	http://www.ncbi.nlm.nih.gov/gene/?term=YE3760
YE3761	YE3761	ptsN	ptsN	4104230	4104712	+	PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN		gene	gene3719	http://www.ncbi.nlm.nih.gov/gene/?term=YE3761
YE3762	YE3762		YE3762	4104791	4105642	+	hypothetical protein		gene	gene3720	http://www.ncbi.nlm.nih.gov/gene/?term=YE3762
YE3763	YE3763	npr	npr	4105643	4105915	+	phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr)		gene	gene3721	http://www.ncbi.nlm.nih.gov/gene/?term=YE3763
YE3766	YE3766	pyrB	pyrB	4107093	4108028	+	aspartate carbamoyltransferase catalytic subunit	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis	gene	gene3722	http://www.ncbi.nlm.nih.gov/gene/?term=YE3766
YE3767	YE3767	pyrI	pyrI	4108040	4108504	+	aspartate carbamoyltransferase regulatory subunit	involved in the allosteric regulation of aspartate carbamoyltransferase	gene	gene3723	http://www.ncbi.nlm.nih.gov/gene/?term=YE3767
YE3768	YE3768		YE3768	4109020	4109406	+	hypothetical protein		gene	gene3724	http://www.ncbi.nlm.nih.gov/gene/?term=YE3768
YE3769	YE3769		YE3769	4109674	4111110	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein Pa1730 SWALL:Q9I307 (EMBL:AE004599) (470 aa) fasta scores: E(): 2.2e-134%2C 69.52 38d in 466 aa%2C and to Ralstonia solanacearum hypothetical protein Rsc1121 or rs04633 SWALL:Q8Y0C3 (EMBL:AL646062) (507 aa) fasta scores: E(): 1.5e-130%2C 68.81 38d in 465 aa	gene	gene3725	http://www.ncbi.nlm.nih.gov/gene/?term=YE3769
YE3770	YE3770		YE3770	4111104	4112033	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein Pa1731 SWALL:Q9I306 (EMBL:AE004599) (317 aa) fasta scores: E(): 1.1e-51%2C 45.71 38d in 315 aa%2C and to Ralstonia solanacearum hypothetical protein Rsc1122 or rs04632 SWALL:Q8Y0C2 (EMBL:AL646062) (316 aa) fasta scores: E(): 2e-46%2C 43.87 38d in 310 aa	gene	gene3726	http://www.ncbi.nlm.nih.gov/gene/?term=YE3770
YE3771	YE3771		YE3771	4112030	4112851	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein Pa1732 pa1732 SWALL:Q9I305 (EMBL:AE004599) (266 aa) fasta scores: E(): 4e-54%2C 52.74 38d in 273 aa%2C and to Ralstonia solanacearum hypothetical protein Rsc1123 rsc1123 or rs04630 SWALL:Q8Y0C1 (EMBL:AL646062) (292 aa) fasta scores: E(): 1.4e-35%2C 40.65 38d in 273 aa	gene	gene3727	http://www.ncbi.nlm.nih.gov/gene/?term=YE3771
YE3772	YE3772		YE3772	4112875	4113609	+	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein Pa1733 pa1733 SWALL:Q9I304 (EMBL:AE004599) (243 aa) fasta scores: E(): 9e-56%2C 59.24 38d in 238 aa%2C and to Ralstonia solanacearum hypothetical protein Rsc1124 rsc1124 or rs04629 SWALL:Q8Y0C0 (EMBL:AL646062) (304 aa) fasta scores: E(): 2.2e-47%2C 52.65 38d in 245 aa	gene	gene3728	http://www.ncbi.nlm.nih.gov/gene/?term=YE3772
YE3773	YE3773	olgH	olgH	4113996	4115657	-	trehalose-6-phosphate hydrolase		gene	gene3729	http://www.ncbi.nlm.nih.gov/gene/?term=YE3773
YE3774	YE3774	treB	treB	4115725	4117140	-	PTS system trehalose(maltose)-specific transporter subunit IIBC	phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel	gene	gene3730	http://www.ncbi.nlm.nih.gov/gene/?term=YE3774
YE3775	YE3775	treR	treR	4117357	4118304	-	trehalose repressor	regulates genes involved in trehalose metabolism%3B binds the intermediate trehalose-6-phosphate%3B binds a dimer%3B regulates treBC operon	gene	gene3731	http://www.ncbi.nlm.nih.gov/gene/?term=YE3775
YE3776	YE3776	mgtA	mgtA	4118811	4121531	+	magnesium-transporting ATPase MgtA	P-type ATPase involved in magnesium influx	gene	gene3732	http://www.ncbi.nlm.nih.gov/gene/?term=YE3776
YE3777	YE3777		YE3777	4121653	4123581	-	transcriptional regulator	Similar to Salmonella typhimurium putative phosphotransferase system mannitol/fructose-specific IIa domain stm4448 SWALL:Q8ZK41 (EMBL:AE008908) (637 aa) fasta scores: E(): 9.2e-164%2C 64.95 38d in 642 aa%2C and to Salmonella typhi putative BglB-family transcriptional antiterminator sty4787 SWALL:Q8Z139 (EMBL:AL627283) (657 aa) fasta scores: E(): 2.6e-163%2C 64.64 38d in 642 aa~Phosphophorylatable regulatory domains found in the BglG family transcriptional antiterminator	gene	gene3733	http://www.ncbi.nlm.nih.gov/gene/?term=YE3777
YE3778	YE3778		YE3778	4123653	4124876	-	hypothetical protein	Similar to Ralstonia solanacearum putative hemagglutinin-related protein rsp0183 or rs04695 SWALL:Q8XTD0 (EMBL:AL646077) (410 aa) fasta scores: E(): 1.4e-22%2C 35.96 38d in 406 aa%2C and to Bacillus subtilis hypothetical protein YkgB ykgB SWALL:YKGB_BACSU (SWALL:O34499) (349 aa) fasta scores: E(): 9.2e-21%2C 33.05 id in 363 aa%2C and to Listeria monocytogenes hypothetical protein Lmo0558 lmo0558 SWALL:Q8Y9H0 (EMBL:AL591975) (346 aa) fasta scores: E(): 2.6e-19%2C 31.6 38d in 367 aa	gene	gene3734	http://www.ncbi.nlm.nih.gov/gene/?term=YE3778
YE3779	YE3779		YE3779	4124986	4125726	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty4786 SWALL:Q8Z140 (EMBL:AL627283) (246 aa) fasta scores: E(): 3.3e-68%2C 78.77 38d in 245 aa	gene	gene3735	http://www.ncbi.nlm.nih.gov/gene/?term=YE3779
YE3780	YE3780		YE3780	4125730	4126842	-	L-seryl-tRNA selenocysteine synthase	Similar to Salmonella typhi hypothetical protein Sty4785 SWALL:Q8Z141 (EMBL:AL627283) (372 aa) fasta scores: E(): 1.3e-95%2C 72.75 38d in 367 aa%2C and to Salmonella typhimurium putative selenocysteine synthase stm4446 SWALL:Q8ZK43 (EMBL:AE008908) (372 aa) fasta scores: E(): 1.5e-95%2C 72.75 38d in 367 aa	gene	gene3736	http://www.ncbi.nlm.nih.gov/gene/?term=YE3780
YE3781	YE3781		YE3781	4126826	4127995	-	dihydroorotase	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides	gene	gene3737	http://www.ncbi.nlm.nih.gov/gene/?term=YE3781
YE3782	YE3782		YE3782	4128190	4128843	-	inner membrane protein	Similar to Salmonella typhimurium putative inner membrane protein stm4444 SWALL:Q8ZK45 (EMBL:AE008908) (214 aa) fasta scores: E(): 2.9e-66%2C 92.05 38d in 214 aa	gene	gene3738	http://www.ncbi.nlm.nih.gov/gene/?term=YE3782
YE3783	YE3783		YE3783	4128862	4129638	-	hypothetical protein	Similar to Salmonella typhimurium%2C and Salmonella typhi putative inner membrane protein stm4443 or sty4782 SWALL:Q8XFG3 (EMBL:AE008908) (258 aa) fasta scores: E(): 1.5e-88%2C 85.27 38d in 258 aa	gene	gene3739	http://www.ncbi.nlm.nih.gov/gene/?term=YE3783
YE3784	YE3784		YE3784	4129652	4129948	-	hypothetical protein	Similar to Salmonella typhimurium putative cytoplasmic protein stm4442 SWALL:Q8ZK46 (EMBL:AE008908) (100 aa) fasta scores: E(): 5.1e-22%2C 63.26 38d in 98 aa	gene	gene3740	http://www.ncbi.nlm.nih.gov/gene/?term=YE3784
YE3785	YE3785		YE3785	4129948	4130313	-	hypothetical protein	Similar to Salmonella typhimurium%2C and Salmonella typhi putative cytoplasmic protein stm4441 or sty4780 SWALL:Q8XGX3 (EMBL:AE008908) (120 aa) fasta scores: E(): 6.2e-35%2C 84.03 38d in 119 aa	gene	gene3741	http://www.ncbi.nlm.nih.gov/gene/?term=YE3785
YE3786	YE3786		YE3786	4130337	4130681	-	hypothetical protein	Similar to Salmonella typhimurium%2C and Salmonella typhi putative cytoplasmic protein stm4440 or sty4779 SWALL:Q8XGH7 (EMBL:AE008908) (112 aa) fasta scores: E(): 1.3e-18%2C 66.3 38d in 92 aa	gene	gene3742	http://www.ncbi.nlm.nih.gov/gene/?term=YE3786
YE3787	YE3787	rnk	rnk	4131213	4131623	+	nucleoside diphosphate kinase regulator	Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis%2C CTP for lipid synthesis%2C and GTP for protein elongation	gene	gene3743	http://www.ncbi.nlm.nih.gov/gene/?term=YE3787
YE3788	YE3788		YE3788	4131672	4132058	-	cytochrome		gene	gene3744	http://www.ncbi.nlm.nih.gov/gene/?term=YE3788
YE3789	YE3789	pmbA	pmbA	4132248	4133588	-	peptidase PmbA	protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD	gene	gene3745	http://www.ncbi.nlm.nih.gov/gene/?term=YE3789
YE3790	YE3790		YE3790	4133757	4134302	+	hypothetical protein		gene	gene3746	http://www.ncbi.nlm.nih.gov/gene/?term=YE3790
YE3791	YE3791		YE3791	4134454	4134720	-	ribonuclease inhibitor		gene	gene3747	http://www.ncbi.nlm.nih.gov/gene/?term=YE3791
YE3792	YE3792		YE3792	4134725	4135183	-	ribonuclease		gene	gene3748	http://www.ncbi.nlm.nih.gov/gene/?term=YE3792
YE3793	YE3793	gabD	gabD	4135296	4136789	-	succinate-semialdehyde dehydrogenase	Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 3.2e-105%2C56.19 38d in 468 aa%2C and to Salmonella typhimurium succinate-semialdehyde dehydrogenase i%2C NADP-dependent gabD or stm2791 SWALL:Q8ZMM2 (EMBL:AE008827) (482 aa) fasta scores: E(): 9.7e-107%2C 55.83 38d in 480 aa	gene	gene3749	http://www.ncbi.nlm.nih.gov/gene/?term=YE3793
YE3794	YE3794	yhcP	yhcP	4136911	4138866	-	p-hydroxybenzoic acid efflux subunit AaeB	with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate	gene	gene3750	http://www.ncbi.nlm.nih.gov/gene/?term=YE3794
YE3795	YE3795	yhcQ	yhcQ	4138868	4139803	-	p-hydroxybenzoic acid efflux subunit AaeA	with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid%2C 6-hydroxy-2-naphthoic and 2-hydroxycinnamate	gene	gene3751	http://www.ncbi.nlm.nih.gov/gene/?term=YE3795
YE3796	YE3796		YE3796	4139811	4140014	-	hypothetical protein	membrane protein AaeX%3B the gene is a member of the aaeXAB operon	gene	gene3752	http://www.ncbi.nlm.nih.gov/gene/?term=YE3796
YE3797	YE3797		YE3797	4140327	4141238	+	DNA-binding transcriptional regulator		gene	gene3753	http://www.ncbi.nlm.nih.gov/gene/?term=YE3797
YE3798	YE3798	tldD	tldD	4141310	4142755	-	protease TldD	responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17%2C an exported protein that targets the essential topoisomerase II DNA gyrase%3B degrades the E. coli plasmid F-encoded CcdA	gene	gene3754	http://www.ncbi.nlm.nih.gov/gene/?term=YE3798
YE3799	YE3799		YE3799	4142767	4143627	-	carbon-nitrogen hydrolase		gene	gene3755	http://www.ncbi.nlm.nih.gov/gene/?term=YE3799
YE3800	YE3800		YE3800	4143624	4147499	-	hypothetical protein		gene	gene3756	http://www.ncbi.nlm.nih.gov/gene/?term=YE3800
YE3801	YE3801	cafA	cafA	4147546	4149015	-	ribonuclease G	involved in the processing of the 5'end of 16S rRNA	gene	gene3757	http://www.ncbi.nlm.nih.gov/gene/?term=YE3801
YE3802	YE3802	yhdE	yhdE	4149005	4149598	-	Maf-like protein	Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell	gene	gene3758	http://www.ncbi.nlm.nih.gov/gene/?term=YE3802
YE3803	YE3803	mreD	mreD	4149612	4150100	-	rod shape-determining protein MreD	part of cell wall structural complex MreBCD%3B transmembrane component	gene	gene3759	http://www.ncbi.nlm.nih.gov/gene/?term=YE3803
YE3804	YE3804	mreC	mreC	4150097	4151083	-	rod shape-determining protein MreC	in some organisms this protein is a transmembrane protein while in others it is periplasmic%3B involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall	gene	gene3760	http://www.ncbi.nlm.nih.gov/gene/?term=YE3804
YE3805	YE3805	envB	envB	4151183	4152226	-	rod shape-determining protein MreB	functions in MreBCD complex in some organisms	gene	gene3761	http://www.ncbi.nlm.nih.gov/gene/?term=YE3805
YE3806	YE3806	yhdA	yhdA	4152561	4154480	-	regulatory protein CsrD	regulates the degradation of the small RNAs CsrB and CsrC%3B may function to targate RNase E to specific RNA molecules	gene	gene3762	http://www.ncbi.nlm.nih.gov/gene/?term=YE3806
YE3807	YE3807	yhdH	yhdH	4154765	4155742	+	zinc-binding dehydrogenase		gene	gene3763	http://www.ncbi.nlm.nih.gov/gene/?term=YE3807
YE3808	YE3808		YE3808	4155901	4156935	+	sulfite oxidase subunit YedY	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase%3B sulfite oxidase activity not demonstrated%3B requires inner membrane anchor protein YedZ	gene	gene3764	http://www.ncbi.nlm.nih.gov/gene/?term=YE3808
YE3809	YE3809		YE3809	4156935	4157534	+	sulfite oxidase subunit YedZ	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY%3B sulfite oxidase activity not demonstrated%3B contains heme	gene	gene3765	http://www.ncbi.nlm.nih.gov/gene/?term=YE3809
YE3810	YE3810	aroQ	aroQ	4157743	4158195	+	3-dehydroquinate dehydratase	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis	gene	gene3766	http://www.ncbi.nlm.nih.gov/gene/?term=YE3810
YE3811	YE3811	accB	accB	4158353	4158817	+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex%2C the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism	gene	gene3767	http://www.ncbi.nlm.nih.gov/gene/?term=YE3811
YE3812	YE3812	accC	accC	4158829	4160178	+	acetyl-CoA carboxylase biotin carboxylase subunit	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase%2C an enzyme that catalyzes the formation of malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism	gene	gene3768	http://www.ncbi.nlm.nih.gov/gene/?term=YE3812
YE3813	YE3813	yhdT	yhdT	4160453	4160695	+	hypothetical protein		gene	gene3769	http://www.ncbi.nlm.nih.gov/gene/?term=YE3813
YE3814	YE3814	panF	panF	4160685	4162139	+	sodium/panthothenate symporter	mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions%3B member of SSS family of sodium/solute symporters%3B the imported panthothenate is phosphorylated by panthothenate kinase	gene	gene3770	http://www.ncbi.nlm.nih.gov/gene/?term=YE3814
YE3815	YE3815	prmA	prmA	4162315	4163196	+	50S ribosomal protein L11 methyltransferase	methylates ribosomal protein L11 at multiple amino acid positions%3B mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype	gene	gene3771	http://www.ncbi.nlm.nih.gov/gene/?term=YE3815
YE3816	YE3816		YE3816	4163625	4164590	+	tRNA-dihydrouridine synthase B		gene	gene3772	http://www.ncbi.nlm.nih.gov/gene/?term=YE3816
YE3817	YE3817	fis	fis	4164615	4164911	+	DNA-binding protein Fis	Stimulates excision of phage lambda%3B affects Mu development%3B acts as an activator of rRNA and iRNA transcription	gene	gene3773	http://www.ncbi.nlm.nih.gov/gene/?term=YE3817
YE3818	YE3818		YE3818	4164983	4166542	-	cell signalling regulator	Similar to Ralstonia solanacearum probable transmembrane protein rsc1893 or rs03455 SWALL:Q8XY70 (EMBL:AL646067) (533 aa) fasta scores: E(): 7.6e-80%2C 45.4 id in 511 aa%2C and to Agrobacterium tumefaciens two component response regulator pleD or atu1297 or agr_c_2387 SWALL:Q8UFV0 (EMBL:AE009091) (456 aa) fasta scores: E(): 3.6e-19%2C 29.24 38d in 465 aa~possible N-terminal membrane anchor	gene	gene3774	http://www.ncbi.nlm.nih.gov/gene/?term=YE3818
YE3819	YE3819	pcpY3	pcpY3	4166784	4167254	+	outer membrane lipoprotein		gene	gene3775	http://www.ncbi.nlm.nih.gov/gene/?term=YE3819
YE3821	YE3821	cspA1	cspA1	4167654	4167866	+	major cold shock protein CspA1	Similar to previously sequenced Yersinia enterocolitica major cold shock protein CspA1 cspA1 SWALL:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 3e-27%2C 98.57 38d in 70 aa%2C and to Yersinia pestis major cold shock protein CspA1 cspA1 or ypo3644 SWALL:Q8ZAY7 (EMBL:AJ414158) (70 aa) fasta scores: E(): 1e-26%2C 95.71 id in 70 aa%2C and to Escherichia coli cold shock-like protein CspI cspI or cspJ or b1552 SWALL:CSPI_ECOLI (SWALL:P77605) (70 aa) fasta scores: E(): 6.5e-22%2C 82.85 id in 70 aa	gene	gene3776	http://www.ncbi.nlm.nih.gov/gene/?term=YE3821
YE3822	YE3822	cspA3	cspA3	4168133	4168345	+	major cold shock protein CspA1	Similar to previously sequenced Yersinia enterocolitica major cold shock protein CspaA cspA1 SWALL:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 3e-27%2C 98.57 38d in 70 aa%2C and to Yersinia pestis major cold shock protein CspA1 cspA1 or ypo3644 SWALL:Q8ZAY7 (EMBL:AJ414158) (70 aa) fasta scores: E(): 1e-26%2C 95.71 id in 70 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 cold shock-like protein CspG cspG or cspI or b0990 or z1406 or ecs1145 SWALL:CSPG_ECOLI (SWALL:Q47130) (70 aa) fasta scores: E(): 6.5e-22%2C 80 38d in 70 aa~probable tandem gene duplication event	gene	gene3777	http://www.ncbi.nlm.nih.gov/gene/?term=YE3822
YE3823	YE3823	cspA2	cspA2	4168613	4168825	+	major cold shock protein	Similar to previously sequenced Yersinia enterocolitica major cold shock protein CspA2 cspA2 SWALL:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 7.8e-28%2C 100 38d in 70 aa%2C and to Escherichia coli cold shock-like protein CspI cspI or cspJ or b1552 SWALL:CSPI_ECOLI (SWALL:P77605) (70 aa) fasta scores: E(): 3.2e-23%2C 84.28 38d in 70 aa	gene	gene3778	http://www.ncbi.nlm.nih.gov/gene/?term=YE3823
YE3824	YE3824	tpn1330	tpn1330	4169053	4170246	+	transposase for IS1330	Highly similar to Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:Q8RSF5 (EMBL:AJ344215) (397 aa) fasta scores: E(): 5.5e-131%2C78.33 38d in 397 aa. Also similar to Shigella flexneri%2Cand Shigella flexneri 2A IS10 orf S0034 or Cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 2.5e-119%2C 73.04 38d in 397 aa. Note this copy of IS1330 although highly similar to the others within this genome may represent a descrete IS element.	gene	gene3779	http://www.ncbi.nlm.nih.gov/gene/?term=YE3824
YE3825	YE3825		YE3825	4170354	4171356	+			gene	gene3780	http://www.ncbi.nlm.nih.gov/gene/?term=YE3825
YE3827	YE3827		YE3827	4172077	4173489	+	membrane transport protein		gene	gene3781	http://www.ncbi.nlm.nih.gov/gene/?term=YE3827
YE3829	YE3829	ddg	ddg	4173848	4174768	+	lipid A biosynthesis palmitoleoyl acyltransferase	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock	gene	gene3782	http://www.ncbi.nlm.nih.gov/gene/?term=YE3829
YE3830	YE3830		YE3830	4174815	4175633	-	transposase for IS1664 element	Similar to Yersinia pestis transposase for insertion sequence IS1661 SWALL:Q8XF80 (EMBL:AJ414160) (261 aa) fasta scores: E(): 5.9e-46%2C 50.19 38d in 257 aa. Also similar to Ralstonia solanacearum ISrsoII-transposase OrfB protein SWALL:Q8XX51 (EMBL:AL646069) (269 aa) fasta scores: E(): 7e-61%2C 58.11 38d in 265 aa%2C and to Escherichia coli putative transposase InsK for insertion sequence element IS150 SWALL:INSK_ECOLI (SWALL:P19769) (283 aa) fasta scores: E(): 7.1e-58%2C 53.43 38d in 262 aa	gene	gene3783	http://www.ncbi.nlm.nih.gov/gene/?term=YE3830
YE3831	YE3831		YE3831	4175669	4176193	-	insertion element IS1664 protein	Similar to Yersinia pestis insertion element IS1661 DNA-binding protein YPO0996 SWALL:Q8ZHA8 (EMBL:AJ414145)(178 aa) fasta scores: E(): 8.6e-14%2C 36.51 id in 178 aa%2C and to Klebsiella pneumoniae OrfA SWALL:Q9AG22 (EMBL:AF345899) (173 aa) fasta scores: E(): 1e-18%2C 40.22 38d in 174 aa	gene	gene3784	http://www.ncbi.nlm.nih.gov/gene/?term=YE3831
YE3832	YE3832		YE3832	4176282	4177820	-	hypothetical protein	Similar to Salmonella typhi PqaA SWALL:Q9RN45 (EMBL:AF188291) (518 aa) fasta scores: E(): 1.3e-100%2C51.74 38d in 487 aa~highly similar to Salmonella PhoP/Q regulated gene	gene	gene3785	http://www.ncbi.nlm.nih.gov/gene/?term=YE3832
YE3833	YE3833		YE3833	4178242	4179267	+	ABC transporter substrate-binding protein	Similar to Escherichia coli O157:H7 putative amino-acid ABC transporter binding protein YhdW precursor or z4629 or ecs4141 SWALL:YHDW_ECO57 (SWALL:P58068) (341 aa) fasta scores: E(): 6.1e-116%2C 84.45 38d in 341 aa%2C and to Rhizobium leguminosarum general L-amino acid-binding periplasmic protein AapJ precursor SWALL:AAPJ_RHILV (SWALL:Q52812) (341 aa) fasta scores: E(): 2.4e-79%2C 57.43 id in 343 aa	gene	gene3786	http://www.ncbi.nlm.nih.gov/gene/?term=YE3833
YE3834	YE3834		YE3834	4179474	4180652	+	ABC transporter permease	Similar to Escherichia coli O157:H7 putative transport system permease protein yhdX or z4630 or ecs4142 SWALL:Q8X5G4 (EMBL:AE005554) (393 aa) fasta scores: E(): 1.8e-118%2C 76.92 38d in 390 aa%2C and to Rhizobium leguminosarum general L-amino acid transport system permease protein AapQ SWALL:AAPQ_RHILV (SWALL:Q52813) (400 aa) fasta scores: E(): 1.7e-65%2C 49.86 38d in 383 aa	gene	gene3787	http://www.ncbi.nlm.nih.gov/gene/?term=YE3834
YE3835	YE3835		YE3835	4180662	4181771	+	ABC transporter permease	Similar to Escherichia coli hypothetical amino-acid ABC transporter permease protein YhdY or b3270 SWALL:YHDY_ECOLI (SWALL:P45768) (367 aa) fasta scores: E(): 4.9e-121%2C 80.81 38d in 370 aa%2C and to Rhizobium leguminosarum general L-amino acid transport system permease protein AapM SWALL:AAPM_RHILV (SWALL:Q52814) (384 aa) fasta scores: E(): 6e-60%2C 49.07 38d in 377 aa	gene	gene3788	http://www.ncbi.nlm.nih.gov/gene/?term=YE3835
YE3836	YE3836		YE3836	4181768	4182541	+	ABC transporter ATP-binding protein	Similar to Escherichia coli O157:H7 putative ATP-binding component of a transport system yhdZ or z4632 or ecs4144 SWALL:Q8X4T3 (EMBL:AE005554) (252 aa) fasta scores: E(): 2.9e-79%2C 89.02 38d in 246 aa%2C and to Rhizobium leguminosarum general L-amino acid transport ATP-binding protein AapP SWALL:AAPP_RHILV (SWALL:Q52815) (257 aa) fasta scores: E(): 1.4e-67%2C 74.89 38d in 243 aa	gene	gene3789	http://www.ncbi.nlm.nih.gov/gene/?term=YE3836
YE3837	YE3837		YE3837	4182612	4183301	-	inner membrane protein	Similar to Salmonella typhimurium putative inner membrane protein stm4272 SWALL:Q8ZKF9 (EMBL:AE008900) (229 aa) fasta scores: E(): 8e-63%2C 72.92 38d in 229 aa	gene	gene3790	http://www.ncbi.nlm.nih.gov/gene/?term=YE3837
YE3838	YE3838		YE3838	4183848	4184774	+	LysR family transcriptional regulator	Similar to Salmonella typhimurium putative transcriptional regulator%2C lysR family stm4270 SWALL:Q8ZKG0 (EMBL:AE008900) (295 aa) fasta scores: E(): 5.1e-78%2C 69.75 38d in 291 aa%2C and to Bacillus subtilis transcriptional regulatory protein GltC gltC SWALL:GLTC_BACSU (SWALL:P20668) (300 aa) fasta scores: E(): 2e-18%2C 26.19 38d in 294 aa	gene	gene3791	http://www.ncbi.nlm.nih.gov/gene/?term=YE3838
YE3839	YE3839		YE3839	4184781	4186430	-	Na(+)/H(+) exchanger protein		gene	gene3792	http://www.ncbi.nlm.nih.gov/gene/?term=YE3839
YE3840	YE3840		YE3840	4186646	4187911	-	xanthine/uracil permease		gene	gene3793	http://www.ncbi.nlm.nih.gov/gene/?term=YE3840
YE3841	YE3841		YE3841	4188489	4189160	-	glutathione-S-transferase	Similar to Salmonella typhimurium putative glutathione S-transferase stm4267 SWALL:Q8ZKG3 (EMBL:AE008900) (222 aa) fasta scores: E(): 1.9e-50%2C54.26 38d in 223 aa%2C and to Pseudomonas syringae GstA gstA SWALL:Q9JP28 (EMBL:AF232004) (208 aa) fasta scores: E(): 5.5e-24%2C 45.53 38d in 224 aa	gene	gene3794	http://www.ncbi.nlm.nih.gov/gene/?term=YE3841
YE3842	YE3842		YE3842	4189423	4189725	+	transcriptional regulator	Similar to Ralstonia solanacearum putative transcription regulator protein hipB or rsp1252 or rs03197 SWALL:Q8XQH3 (EMBL:AL646083) (88 aa) fasta scores: E(): 7e-06%2C 37.5 38d in 88 aa%2C and to Ralstonia solanacearum putative transcription regulator protein rsc1447 or rs03860 SWALL:Q8XZF4 (EMBL:AL646064) (84 aa) fasta scores: E(): 4.5e-05%2C 40.58 38d in 69 aa	gene	gene3795	http://www.ncbi.nlm.nih.gov/gene/?term=YE3842
YE3843	YE3843		YE3843	4189727	4191055	+	transcriptional regulator	Similar to Escherichia coli protein HipA or b1507 SWALL:HIPA_ECOLI (SWALL:P23874) (440 aa) fasta scores: E(): 5.4e-61%2C 39.95 38d in 433 aa%2C and to Ralstonia solanacearum putative HipA transcription regulator protein or rsc1446 or rs03861 SWALL:Q8XZF5 (EMBL:AL646064) (445 aa) fasta scores: E(): 3.3e-78%2C 47.22 38d in 432 aa	gene	gene3796	http://www.ncbi.nlm.nih.gov/gene/?term=YE3843
YE3844	YE3844	exrB	exrB	4191120	4191671	-	single-stranded DNA-binding protein	binds to single stranded DNA and PriA helcase facilitate replication restart	gene	gene3797	http://www.ncbi.nlm.nih.gov/gene/?term=YE3844
YE3845	YE3845	uvrA	uvrA	4192071	4194902	+	excinuclease ABC subunit A	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB%2C the uvrA molecules dissociate	gene	gene3798	http://www.ncbi.nlm.nih.gov/gene/?term=YE3845
YE3846	YE3846		YE3846	4194961	4195314	-	hypothetical protein		gene	gene3799	http://www.ncbi.nlm.nih.gov/gene/?term=YE3846
YE3847	YE3847	tyrB	tyrB	4195781	4196974	-	aromatic amino acid aminotransferase	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate	gene	gene3800	http://www.ncbi.nlm.nih.gov/gene/?term=YE3847
YE3848	YE3848	alr	alr	4197032	4198111	-	alanine racemase	converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer	gene	gene3801	http://www.ncbi.nlm.nih.gov/gene/?term=YE3848
YE3849	YE3849	b4052	b4052	4198141	4199547	-	replicative DNA helicase	unwinds double stranded DNA	gene	gene3802	http://www.ncbi.nlm.nih.gov/gene/?term=YE3849
YE3850	YE3850	b4051	b4051	4199738	4200721	+	quinone oxidoreductase		gene	gene3803	http://www.ncbi.nlm.nih.gov/gene/?term=YE3850
YE3851	YE3851		YE3851	4200934	4201260	+	hypothetical protein	No significant database hits	gene	gene3804	http://www.ncbi.nlm.nih.gov/gene/?term=YE3851
YE3851a	YE3851a		YE3851a	4201601	4201819	-	hypothetical protein		gene	gene3805	http://www.ncbi.nlm.nih.gov/gene/?term=YE3851a
YE3852	YE3852		YE3852	4202026	4203054	-	tRNA-dihydrouridine synthase A		gene	gene3806	http://www.ncbi.nlm.nih.gov/gene/?term=YE3852
YE3853	YE3853		YE3853	4203328	4203837	+	zinc uptake transcriptional repressor	Acts as a negative controlling element%2C employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB	gene	gene3807	http://www.ncbi.nlm.nih.gov/gene/?term=YE3853
YE3854	YE3854		YE3854	4204123	4204332	-	stress-response protein	unknown function%3B highly abundant protein in vivo%3B overexpressed under high NaCl concentrations%3B part of the sigma S regulon%3B non-essential	gene	gene3808	http://www.ncbi.nlm.nih.gov/gene/?term=YE3854
YE3855	YE3855	b4043	b4043	4204644	4205252	-	LexA repressor	Represses a number of genes involved in the response to DNA damage	gene	gene3809	http://www.ncbi.nlm.nih.gov/gene/?term=YE3855
YE3856	YE3856	b4042	b4042	4205380	4205748	-	diacylglycerol kinase		gene	gene3810	http://www.ncbi.nlm.nih.gov/gene/?term=YE3856
YE3857	YE3857	b4041	b4041	4205874	4208342	+	glycerol-3-phosphate acyltransferase	PlsB%3B catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA	gene	gene3811	http://www.ncbi.nlm.nih.gov/gene/?term=YE3857
YE3858	YE3858	ubiA	ubiA	4208400	4209266	-	4-hydroxybenzoate octaprenyltransferase	catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate%2C as part of the ubiquinone biosynthesis pathway	gene	gene3812	http://www.ncbi.nlm.nih.gov/gene/?term=YE3858
YE3859	YE3859	ubiC	ubiC	4209291	4209797	-	chorismate pyruvate lyase	catalyzes the formation of 4-hydroxybenzoate from chorismate	gene	gene3813	http://www.ncbi.nlm.nih.gov/gene/?term=YE3859
YE3860	YE3860		YE3860	4209936	4212857	-	hypothetical protein	Similar to Shigella flexneri%2C and Shigella flexneri 2A OspG%2C secreted by the mxi-spa secretion machinery%2Cfunction unknown ospG or s0237 SWALL:Q99PZ6 (EMBL:AL391753) (196 aa) fasta scores: E(): 1.3e-09%2C37.32 38d in 142 aa%2C and to Escherichia coli O157:H7 hypothetical protein Z0989 z0989 or ecs0848 SWALL:Q8X831 (EMBL:AE005258) (293 aa) fasta scores: E(): 2.2e-05%2C35.29 38d in 153 aa	gene	gene3814	http://www.ncbi.nlm.nih.gov/gene/?term=YE3860
YE3861	YE3861	malM	malM	4213110	4214045	-	maltose regulon periplasmic protein		gene	gene3815	http://www.ncbi.nlm.nih.gov/gene/?term=YE3861
YE3862	YE3862	lamB	lamB	4214265	4215551	-	maltoporin	porin involved in the transport of maltose and maltodextrins	gene	gene3816	http://www.ncbi.nlm.nih.gov/gene/?term=YE3862
YE3863	YE3863	malK	malK	4215623	4216738	-	maltose/maltodextrin transporter ATP-binding protein	with malEFG is involved in import of maltose/maltodextrin	gene	gene3817	http://www.ncbi.nlm.nih.gov/gene/?term=YE3863
YE3864	YE3864		YE3864	4216726	4216926	-	hypothetical protein	Doubtful CDS	gene	gene3818	http://www.ncbi.nlm.nih.gov/gene/?term=YE3864
YE3866	YE3866	malE	malE	4217386	4218597	+	maltose ABC transporter substrate-binding protein	functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis	gene	gene3819	http://www.ncbi.nlm.nih.gov/gene/?term=YE3866
YE3867	YE3867	malF	malF	4218807	4220384	+	maltose transporter membrane protein	with MalKGE is involved in maltose transport into the cell	gene	gene3820	http://www.ncbi.nlm.nih.gov/gene/?term=YE3867
YE3868	YE3868	malG	malG	4220398	4221288	+	maltose transporter permease	with MalKFE is involved in the transport of maltose into the cell	gene	gene3821	http://www.ncbi.nlm.nih.gov/gene/?term=YE3868
YE3869	YE3869		YE3869	4221513	4221920	-	phosphate-starvation-inducible protein PsiE		gene	gene3822	http://www.ncbi.nlm.nih.gov/gene/?term=YE3869
YE3870	YE3870	pgi	pgi	4222024	4223670	-	glucose-6-phosphate isomerase	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis%3B catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate%3B member of PGI family	gene	gene3823	http://www.ncbi.nlm.nih.gov/gene/?term=YE3870
YE3873	YE3873	apk	apk	4224330	4225640	+	aspartate kinase III	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP%3B functions in amino acid biosynthesis%3B lysine sensitive	gene	gene3824	http://www.ncbi.nlm.nih.gov/gene/?term=YE3873
YE3875	YE3875	metH	metH	4226279	4229974	-	B12-dependent methionine synthase	one of two methionine synthases in Escherichia coli%3B MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine%3B requires zinc for activity	gene	gene3825	http://www.ncbi.nlm.nih.gov/gene/?term=YE3875
YE3876	YE3876		YE3876	4230215	4231054	+	IclR family transcriptional regulator	regulates the glyoxylate bypass operon (aceBAK)%2C which encodes isocitrate lyase%2C malate synthase and isocitrate dehydrogenase kinase/phosphorylase	gene	gene3826	http://www.ncbi.nlm.nih.gov/gene/?term=YE3876
YE3877	YE3877		YE3877	4231120	4231977	-	hypothetical protein	Similar to many insertion sequence proteins including: Yersinia enterocolitica IS1329 transposase B SWALL:Q9X9I3 (EMBL:AJ132945) (249 aa) fasta scores: E(): 6.7e-32%2C 39.75 38d in 244 aa and Shigella flexneri 2A InsB Cp0269 SWALL:Q8VS98 (EMBL:AF386526) (279 aa) fasta scores: E(): 6e-90%2C 72 38d in 275 aa	gene	gene3827	http://www.ncbi.nlm.nih.gov/gene/?term=YE3877
YE3878	YE3878		YE3878	4231986	4232285	-	transposase for insertion sequence element IS1666	Similar to many transposases including: Yersinia enterocolitica IS1329 transposase A SWALL:Q9X9I2 (EMBL:AJ132945) (110 aa) fasta scores: E(): 1.4e-10%2C 40.2 id in 97 aa and Shigella dysenteriae transposase InsN for insertion sequence element IS911 InsN SWALL:INSN_SHIDY (SWALL:P39213) (112 aa) fasta scores: E(): 2.2e-22%2C 70.1 id in 97 aa	gene	gene3828	http://www.ncbi.nlm.nih.gov/gene/?term=YE3878
YE3879	YE3879	aceK	aceK	4232593	4234320	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein	catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity%3B unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol	gene	gene3829	http://www.ncbi.nlm.nih.gov/gene/?term=YE3879
YE3880	YE3880	aceA	aceA	4234397	4235704	-	isocitrate lyase		gene	gene3830	http://www.ncbi.nlm.nih.gov/gene/?term=YE3880
YE3881	YE3881	aceB	aceB	4235877	4237475	-	malate synthase	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle	gene	gene3831	http://www.ncbi.nlm.nih.gov/gene/?term=YE3881
YE3882	YE3882	metA	metA	4237881	4238810	-	homoserine O-succinyltransferase	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis	gene	gene3832	http://www.ncbi.nlm.nih.gov/gene/?term=YE3882
YE3883	YE3883		YE3883	4245402	4245944	+	transferase		gene	gene3840	http://www.ncbi.nlm.nih.gov/gene/?term=YE3883
YE3884	YE3884	aroE	aroE	4246004	4246825	-	shikimate 5-dehydrogenase	AroE%3B catalyzes the conversion of shikimate to 3-dehydroshikimate	gene	gene3841	http://www.ncbi.nlm.nih.gov/gene/?term=YE3884
YE3885	YE3885		YE3885	4246834	4247406	-	ribosome maturation factor	RimN%3B YrdC%3B required for maturation of 16s RNA%3B binds preferentially double stranded RNA	gene	gene3842	http://www.ncbi.nlm.nih.gov/gene/?term=YE3885
YE3886	YE3886		YE3886	4247414	4247950	-	DNA-binding protein		gene	gene3843	http://www.ncbi.nlm.nih.gov/gene/?term=YE3886
YE3887	YE3887		YE3887	4247992	4248429	-	hypothetical protein		gene	gene3844	http://www.ncbi.nlm.nih.gov/gene/?term=YE3887
YE3888	YE3888		YE3888	4248437	4249558	-	DNA protecting protein DprA		gene	gene3845	http://www.ncbi.nlm.nih.gov/gene/?term=YE3888
YE3889	YE3889	def	def	4249692	4250204	+	peptide deformylase	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins%3B binds iron(2+)	gene	gene3846	http://www.ncbi.nlm.nih.gov/gene/?term=YE3889
YE3890	YE3890	fmt	fmt	4250229	4251176	+	methionyl-tRNA formyltransferase	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation%3B inactivation of this gene in Escherichia coli severely impairs growth	gene	gene3847	http://www.ncbi.nlm.nih.gov/gene/?term=YE3890
YE3891	YE3891		YE3891	4251468	4252757	+	16S rRNA methyltransferase B	catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA%3B SAM-dependent methyltransferase	gene	gene3848	http://www.ncbi.nlm.nih.gov/gene/?term=YE3891
YE3892	YE3892	trkA	trkA	4252809	4254185	+	potassium transporter peripheral membrane protein	involved in potassium uptake%3B found to be peripherally associated with the inner membrane in Escherichia coli%3B contains an NAD-binding domain	gene	gene3849	http://www.ncbi.nlm.nih.gov/gene/?term=YE3892
YE3893	YE3893	mscL	mscL	4254305	4254715	+	large-conductance mechanosensitive channel	forms homopentamer%3B channel that opens in response to pressure or hypoosmotic shock	gene	gene3850	http://www.ncbi.nlm.nih.gov/gene/?term=YE3893
YE3894	YE3894		YE3894	4254769	4254975	-	hypothetical protein		gene	gene3851	http://www.ncbi.nlm.nih.gov/gene/?term=YE3894
YE3895	YE3895	zntR	zntR	4255065	4255490	-	zinc-responsive transcriptional regulator	mediates expression of the zinc export protein ZntA in response to high levels of zinc%3B member of MerR family of transcriptional regulators	gene	gene3852	http://www.ncbi.nlm.nih.gov/gene/?term=YE3895
YE3896	YE3896		YE3896	4255494	4255865	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein YhdN or sty4385 SWALL:Q8Z1X3 (EMBL:AL627282) (122 aa) fasta scores: E(): 5.2e-25%2C 57.5 38d in 120 aa%2C and to Escherichia coli hypothetical protein YhdN or b3293 SWALL:YHDN_ECOLI (SWALL:P36677) (122 aa) fasta scores: E(): 1.3e-23%2C 57.37 38d in 122 aa	gene	gene3853	http://www.ncbi.nlm.nih.gov/gene/?term=YE3896
YE3897	YE3897	rplQ	rplQ	4256035	4256424	-	50S ribosomal protein L17	is a component of the macrolide binding site in the peptidyl transferase center	gene	gene3854	http://www.ncbi.nlm.nih.gov/gene/?term=YE3897
YE3898	YE3898	rpoA	rpoA	4256465	4257457	-	DNA-directed RNA polymerase subunit alpha	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme	gene	gene3855	http://www.ncbi.nlm.nih.gov/gene/?term=YE3898
YE3899	YE3899	rpsD	rpsD	4257483	4258103	-	30S ribosomal protein S4	primary rRNA binding protein%3B nucleates 30S assembly%3B involved in translational accuracy with proteins S5 and S12%3B interacts with protein S5%3B involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA%3B interacts with transcription complex and functions similar to protein NusA in antitermination	gene	gene3856	http://www.ncbi.nlm.nih.gov/gene/?term=YE3899
YE3900	YE3900	rpsK	rpsK	4258134	4258523	-	30S ribosomal protein S11	located on the platform of the 30S subunit%2C it bridges several disparate RNA helices of the 16S rRNA%3B forms part of the Shine-Dalgarno cleft in the 70S ribosome%3B interacts with S7 and S18 and IF-3	gene	gene3857	http://www.ncbi.nlm.nih.gov/gene/?term=YE3900
YE3901	YE3901	rpsM	rpsM	4258540	4258896	-	30S ribosomal protein S13	located at the top of the head of the 30S subunit%2C it contacts several helices of the 16S rRNA%3B makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5%3B contacts P-site tRNA	gene	gene3858	http://www.ncbi.nlm.nih.gov/gene/?term=YE3901
YE3902	YE3902	rpmJ	rpmJ	4259044	4259160	-	50S ribosomal protein L36	smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group have the motif	gene	gene3860	http://www.ncbi.nlm.nih.gov/gene/?term=YE3902
YE3903	YE3903	secY	secY	4259195	4260526	-	preprotein translocase subunit SecY	forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase	gene	gene3861	http://www.ncbi.nlm.nih.gov/gene/?term=YE3903
YE3904	YE3904	rplO	rplO	4260534	4260968	-	50S ribosomal protein L15	late assembly protein	gene	gene3862	http://www.ncbi.nlm.nih.gov/gene/?term=YE3904
YE3905	YE3905	rpmD	rpmD	4260972	4261151	-	50S ribosomal protein L30	L30 binds domain II of the 23S rRNA and the 5S rRNA%3B similar to eukaryotic protein L7	gene	gene3863	http://www.ncbi.nlm.nih.gov/gene/?term=YE3905
YE3906	YE3906	rpsE	rpsE	4261154	4261657	-	30S ribosomal protein S5	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body%3B contacts S4 and S8%3B with S4 and S12 plays a role in translational accuracy%3B mutations in this gene result in spectinomycin resistance	gene	gene3864	http://www.ncbi.nlm.nih.gov/gene/?term=YE3906
YE3907	YE3907	rplR	rplR	4261672	4262025	-	50S ribosomal protein L18	binds 5S rRNA along with protein L5 and L25	gene	gene3865	http://www.ncbi.nlm.nih.gov/gene/?term=YE3907
YE3908	YE3908	rplF	rplF	4262035	4262568	-	50S ribosomal protein L6	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein%3B RNA-binding appears to be in the C-terminal domain%3B mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain%3B it has been localized to a region between the base of the L7/L12 stalk and the central protuberance	gene	gene3866	http://www.ncbi.nlm.nih.gov/gene/?term=YE3908
YE3909	YE3909	rpsH	rpsH	4262583	4262975	-	30S ribosomal protein S8	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	gene	gene3867	http://www.ncbi.nlm.nih.gov/gene/?term=YE3909
YE3910	YE3910	rpsN	rpsN	4263009	4263314	-	30S ribosomal protein S14	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit%3B similar to what is observed with proteins L31 and L33%2C some proteins in this family contain CXXC motifs that are involved in zinc binding%3B if two copies are present in a genome%2C then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc%3B the proteins in this group do not appear to have the zinc-binding motif	gene	gene3868	http://www.ncbi.nlm.nih.gov/gene/?term=YE3910
YE3911	YE3911	rplE	rplE	4263328	4263867	-	50S ribosomal protein L5	part of 50S and 5S/L5/L18/L25 subcomplex%3B contacts 5S rRNA and P site tRNA%3B forms a bridge to the 30S subunit in the ribosome by binding to S13	gene	gene3869	http://www.ncbi.nlm.nih.gov/gene/?term=YE3911
YE3912	YE3912	rplX	rplX	4263882	4264196	-	50S ribosomal protein L24	assembly initiator protein%3B binds to 5' end of 23S rRNA and nucleates assembly of the 50S%3B surrounds polypeptide exit tunnel	gene	gene3870	http://www.ncbi.nlm.nih.gov/gene/?term=YE3912
YE3913	YE3913	rplN	rplN	4264207	4264578	-	50S ribosomal protein L14	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase	gene	gene3871	http://www.ncbi.nlm.nih.gov/gene/?term=YE3913
YE3914	YE3914	rpsQ	rpsQ	4264744	4264998	-	30S ribosomal protein S17	primary binding protein%3B helps mediate assembly%3B involved in translation fidelity	gene	gene3872	http://www.ncbi.nlm.nih.gov/gene/?term=YE3914
YE3915	YE3915	rpmC	rpmC	4264998	4265189	-	50S ribosomal protein L29	one of the stabilizing components for the large ribosomal subunit	gene	gene3873	http://www.ncbi.nlm.nih.gov/gene/?term=YE3915
YE3916	YE3916	rplP	rplP	4265189	4265599	-	50S ribosomal protein L16	located in the peptidyl transferase center and may be involved in peptidyl transferase activity%3B similar to archaeal L10e	gene	gene3874	http://www.ncbi.nlm.nih.gov/gene/?term=YE3916
YE3917	YE3917	rpsC	rpsC	4265612	4266310	-	30S ribosomal protein S3	forms a complex with S10 and S14%3B binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation	gene	gene3875	http://www.ncbi.nlm.nih.gov/gene/?term=YE3917
YE3918	YE3918	rplV	rplV	4266328	4266660	-	50S ribosomal protein L22	binds specifically to 23S rRNA during the early stages of 50S assembly%3B makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome%3B mutations in this gene result in erythromycin resistance%3B located near peptidyl-transferase center	gene	gene3876	http://www.ncbi.nlm.nih.gov/gene/?term=YE3918
YE3919	YE3919	rpsS	rpsS	4266675	4266953	-	30S ribosomal protein S19	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA	gene	gene3877	http://www.ncbi.nlm.nih.gov/gene/?term=YE3919
YE3920	YE3920	rplB	rplB	4266968	4267792	-	50S ribosomal protein L2	one of the primary rRNA-binding proteins%3B required for association of the 30S and 50S subunits to form the 70S ribosome%2C for tRNA binding and peptide bond formation	gene	gene3878	http://www.ncbi.nlm.nih.gov/gene/?term=YE3920
YE3921	YE3921	rplW	rplW	4267809	4268111	-	50S ribosomal protein L23	binds third domain of 23S rRNA and protein L29%3B part of exit tunnel	gene	gene3879	http://www.ncbi.nlm.nih.gov/gene/?term=YE3921
YE3922	YE3922	rplD	rplD	4268108	4268713	-	50S ribosomal protein L4	L4 is important during the early stages of 50S assembly%3B it initially binds near the 5' end of the 23S rRNA	gene	gene3880	http://www.ncbi.nlm.nih.gov/gene/?term=YE3922
YE3923	YE3923	rplC	rplC	4268724	4269353	-	50S ribosomal protein L3	binds directly near the 3' end of the 23S rRNA%2C where it nucleates assembly of the 50S subunit%3B essential for peptidyltransferase activity%3B mutations in this gene confer resistance to tiamulin	gene	gene3881	http://www.ncbi.nlm.nih.gov/gene/?term=YE3923
YE3924	YE3924	nusE	nusE	4269386	4269697	-	30S ribosomal protein S10		gene	gene3882	http://www.ncbi.nlm.nih.gov/gene/?term=YE3924
YE3925	YE3925	bfr	bfr	4270078	4270551	-	bacterioferritin	iron storage protein	gene	gene3883	http://www.ncbi.nlm.nih.gov/gene/?term=YE3925
YE3926	YE3926	bfd	bfd	4270631	4270825	-	bacterioferritin-associated ferredoxin		gene	gene3884	http://www.ncbi.nlm.nih.gov/gene/?term=YE3926
YE3927	YE3927	tufA	tufA	4270968	4272152	-	elongation factor Tu	EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu	gene	gene3885	http://www.ncbi.nlm.nih.gov/gene/?term=YE3927
YE3928	YE3928	far	far	4272224	4274338	-	elongation factor G	EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene	gene	gene3886	http://www.ncbi.nlm.nih.gov/gene/?term=YE3928
YE3929	YE3929	rpsG	rpsG	4274432	4274902	-	30S ribosomal protein S7	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit	gene	gene3887	http://www.ncbi.nlm.nih.gov/gene/?term=YE3929
YE3930	YE3930	rpsL	rpsL	4274999	4275373	-	30S ribosomal protein S12	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone%3B located at the interface of the 30S and 50S subunits%2C it traverses the body of the 30S subunit contacting proteins on the other side%3B mutations in the S12 gene confer streptomycin resistance	gene	gene3888	http://www.ncbi.nlm.nih.gov/gene/?term=YE3930
YE3931	YE3931		YE3931	4275511	4275798	-	sulfur transfer complex subunit TusB	in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs	gene	gene3889	http://www.ncbi.nlm.nih.gov/gene/?term=YE3931
YE3932	YE3932		YE3932	4275818	4276183	-	sulfur relay protein TusC	in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs	gene	gene3890	http://www.ncbi.nlm.nih.gov/gene/?term=YE3932
YE3933	YE3933		YE3933	4276183	4276578	-	sulfur transfer complex subunit TusD	in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs	gene	gene3891	http://www.ncbi.nlm.nih.gov/gene/?term=YE3933
YE3934	YE3934		YE3934	4276578	4277312	-	DNA-binding protein		gene	gene3892	http://www.ncbi.nlm.nih.gov/gene/?term=YE3934
YE3935	YE3935	fkpA	fkpA	4277568	4278383	-	FKBP-type peptidyl-prolyl cis-trans isomerase	rotamase	gene	gene3893	http://www.ncbi.nlm.nih.gov/gene/?term=YE3935
YE3936	YE3936		YE3936	4278667	4278882	+	hypothetical protein		gene	gene3894	http://www.ncbi.nlm.nih.gov/gene/?term=YE3936
YE3937	YE3937		YE3937	4278942	4279106	+	hypothetical protein	Similar to Yersinia pestis hypothetical protein Ypo2189 SWALL:Q8ZEI1 (EMBL:AJ414151) (82 aa) fasta scores: E(): 3.5e-08%2C 68.88 38d in 45 aa	gene	gene3895	http://www.ncbi.nlm.nih.gov/gene/?term=YE3937
YE3938	YE3938	slyD	slyD	4279137	4279721	-	FKBP-type peptidyl-prolyl cis-trans isomerase	rotamase	gene	gene3896	http://www.ncbi.nlm.nih.gov/gene/?term=YE3938
YE3939	YE3939		YE3939	4279816	4280037	-	hypothetical protein		gene	gene3897	http://www.ncbi.nlm.nih.gov/gene/?term=YE3939
YE3940	YE3940	kefB	kefB	4280052	4281860	-	glutathione-regulated potassium-efflux system protein KefB	involved in potassium efflux	gene	gene3898	http://www.ncbi.nlm.nih.gov/gene/?term=YE3940
YE3941	YE3941		YE3941	4281863	4282417	-	glutathione-regulated potassium-efflux system ancillary protein KefG	required for KefB activity	gene	gene3899	http://www.ncbi.nlm.nih.gov/gene/?term=YE3941
YE3942	YE3942		YE3942	4282769	4284685	+	ABC transporter ATP-binding protein	Similar to Salmonella typhimurium putative ATPase component of ABC transporter with duplicated ATPase domain YheS or stm3459 SWALL:Q8ZLL2 (EMBL:AE008858) (635 aa) fasta scores: E(): 1.5e-152%2C 82.14 38d in 633 aa	gene	gene3900	http://www.ncbi.nlm.nih.gov/gene/?term=YE3942
YE3943	YE3943		YE3943	4284748	4285716	+	glycosyl transferase		gene	gene3901	http://www.ncbi.nlm.nih.gov/gene/?term=YE3943
YE3944	YE3944		YE3944	4285808	4286785	+	sugar transferase		gene	gene3902	http://www.ncbi.nlm.nih.gov/gene/?term=YE3944
YE3945	YE3945	tauD	tauD	4286814	4287662	-	taurine dioxygenase	catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide%3B non-heme iron oxidase%3B allows the use of taurine as an alternative sulfur source%3B forms homodimers	gene	gene3903	http://www.ncbi.nlm.nih.gov/gene/?term=YE3945
YE3946	YE3946	ssiC	ssiC	4287659	4288462	-	taurine transporter subunit		gene	gene3904	http://www.ncbi.nlm.nih.gov/gene/?term=YE3946
YE3947	YE3947	tauB	tauB	4288546	4289313	-	taurine transporter ATP-binding protein	Part of the ABC transporter complex tauABC involved in taurine import	gene	gene3905	http://www.ncbi.nlm.nih.gov/gene/?term=YE3947
YE3948	YE3948	tauA	tauA	4289322	4290278	-	taurine transporter substrate binding protein	with TauB and TauC is responsible for taurine uptake.	gene	gene3906	http://www.ncbi.nlm.nih.gov/gene/?term=YE3948
YE3949	YE3949		YE3949	4290637	4291425	-	hypothetical protein	Similar to Pseudomonas aeruginosa hypothetical protein Pa3578 SWALL:YZ78_PSEAE (SWALL:Q9HY42) (261 aa) fasta scores: E(): 3.6e-42%2C 50.37 38d in 264 aa	gene	gene3907	http://www.ncbi.nlm.nih.gov/gene/?term=YE3949
YE3950	YE3950		YE3950	4291571	4292173	-	ABC transporter		gene	gene3908	http://www.ncbi.nlm.nih.gov/gene/?term=YE3950
YE3951	YE3951		YE3951	4292275	4293255	+	hydrolase		gene	gene3909	http://www.ncbi.nlm.nih.gov/gene/?term=YE3951
YE3952	YE3952		YE3952	4293252	4293488	+	hypothetical protein		gene	gene3910	http://www.ncbi.nlm.nih.gov/gene/?term=YE3952
YE3953	YE3953	prk	prk	4293630	4294499	+	phosphoribulokinase 1		gene	gene3911	http://www.ncbi.nlm.nih.gov/gene/?term=YE3953
YE3954	YE3954		YE3954	4294692	4295099	-	hypothetical protein		gene	gene3912	http://www.ncbi.nlm.nih.gov/gene/?term=YE3954
YE3955	YE3955	cap	cap	4295434	4296066	+	cAMP-regulatory protein	complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons	gene	gene3913	http://www.ncbi.nlm.nih.gov/gene/?term=YE3955
YE3956	YE3956		YE3956	4296139	4298259	+	hypothetical protein		gene	gene3914	http://www.ncbi.nlm.nih.gov/gene/?term=YE3956
YE3957	YE3957	argD	argD	4298476	4299693	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase	DapATase%3B bifunctional enzyme that functions in arginine and lysine biosynthetic pathways%3B catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2%2C6-diaminoheptanedioate	gene	gene3915	http://www.ncbi.nlm.nih.gov/gene/?term=YE3957
YE3958	YE3958	pabA	pabA	4299826	4300401	-	para-aminobenzoate synthase component II	aminodeoxychorismate synthase subunit PabA%3B with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis%3B PabA provides the glutamine amidotransferase activity	gene	gene3916	http://www.ncbi.nlm.nih.gov/gene/?term=YE3958
YE3959	YE3959		YE3959	4300422	4301885	-	hypothetical protein		gene	gene3917	http://www.ncbi.nlm.nih.gov/gene/?term=YE3959
YE3960	YE3960	ppiA	ppiA	4302067	4302636	-	peptidyl-prolyl cis-trans isomerase A		gene	gene3918	http://www.ncbi.nlm.nih.gov/gene/?term=YE3960
YE3961	YE3961		YE3961	4302989	4304302	+	glycosyl hydrolase		gene	gene3919	http://www.ncbi.nlm.nih.gov/gene/?term=YE3961
YE3962	YE3962		YE3962	4304384	4305364	+	LacI family transcriptional regulator		gene	gene3920	http://www.ncbi.nlm.nih.gov/gene/?term=YE3962
YE3963	YE3963		YE3963	4305677	4306861	+	hypothetical protein		gene	gene3921	http://www.ncbi.nlm.nih.gov/gene/?term=YE3963
YE3964	YE3964	codA	codA	4306911	4308218	-	cytosine deaminase	Catalyzes the deamination of cytosine to uracil and ammonia	gene	gene3922	http://www.ncbi.nlm.nih.gov/gene/?term=YE3964
YE3965	YE3965	nirB	nirB	4308487	4311033	+	nitrite reductase		gene	gene3923	http://www.ncbi.nlm.nih.gov/gene/?term=YE3965
YE3966	YE3966	nirD	nirD	4311030	4311356	+	nitrite reductase small subunit	involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+%3B bounds to NirB%2C the cytoplasmic subunit%2C whose expression is induced at high nitrate concentrations	gene	gene3924	http://www.ncbi.nlm.nih.gov/gene/?term=YE3966
YE3967	YE3967	nirC	nirC	4311547	4312353	+	nitrite transporter NirC	member of the FNT family of formate and nitrite transporters	gene	gene3925	http://www.ncbi.nlm.nih.gov/gene/?term=YE3967
YE3968	YE3968	cysG	cysG	4312558	4313976	+	siroheme synthase	multifunction enzyme consisting of uroporphyrin-III C-methyltransferase%2C precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase%3B catalyzes the methylation of uroporphyrinogen III to form precorrin-2%2C then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin	gene	gene3926	http://www.ncbi.nlm.nih.gov/gene/?term=YE3968
YE3969	YE3969	trpS	trpS	4314033	4315073	-	tryptophanyl-tRNA synthetase	catalyzes a two-step reaction%2C first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA	gene	gene3927	http://www.ncbi.nlm.nih.gov/gene/?term=YE3969
YE3970	YE3970	gph	gph	4315075	4315773	-	phosphoglycolate phosphatase	catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate	gene	gene3928	http://www.ncbi.nlm.nih.gov/gene/?term=YE3970
YE3971	YE3971	rpe	rpe	4315766	4316443	-	ribulose-phosphate 3-epimerase		gene	gene3929	http://www.ncbi.nlm.nih.gov/gene/?term=YE3971
YE3972	YE3972	dam	dam	4316547	4317359	-	DNA adenine methylase		gene	gene3930	http://www.ncbi.nlm.nih.gov/gene/?term=YE3972
YE3973	YE3973		YE3973	4317443	4318438	-	hypothetical protein		gene	gene3931	http://www.ncbi.nlm.nih.gov/gene/?term=YE3973
YE3974	YE3974	aroB	aroB	4318580	4319668	-	3-dehydroquinate synthase	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate%3B functions in aromatic amino acid biosynthesis	gene	gene3932	http://www.ncbi.nlm.nih.gov/gene/?term=YE3974
YE3975	YE3975	aroK	aroK	4319725	4320246	-	shikimate kinase I	type I enzyme similar to type II but differentially regulated%3B major shikimate kinase in fully repressed cells%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis	gene	gene3933	http://www.ncbi.nlm.nih.gov/gene/?term=YE3975
YE3976	YE3976	hofQ	hofQ	4320594	4321724	-	outer membrane porin HofQ	outer membrane porin probably involved in uptake of extracellular double-stranded DNA%3B similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa	gene	gene3934	http://www.ncbi.nlm.nih.gov/gene/?term=YE3976
YE3976A	YE3976A		YE3976A	4321949	4322326	-	hypothetical protein	Similar to Yersinia pestis putative membrane protein ypo0149 SWALL:Q8ZJF9 (EMBL:AJ414141) (122 aa) fasta scores: E(): 4.2e-14%2C 39.42 38d in 104 aa	gene	gene3935	http://www.ncbi.nlm.nih.gov/gene/?term=YE3976A
YE3977	YE3977		YE3977	4322319	4322885	-	hypothetical protein		gene	gene3936	http://www.ncbi.nlm.nih.gov/gene/?term=YE3977
YE3977A	YE3977A		YE3977A	4322878	4323426	-	hypothetical protein	Similar to Yersinia pestis putative membrane protein ypo0147 SWALL:Q8ZJG1 (EMBL:AJ414141) (201 aa) fasta scores: E(): 2.4e-32%2C 59.88 38d in 177 aa%2C and to Yersinia pestis KIM hypothetical y3927 SWALL:AAM87471 (EMBL:AE013997) (177 aa) fasta scores: E(): 6.5e-25%2C57.89 38d in 152 aa	gene	gene3937	http://www.ncbi.nlm.nih.gov/gene/?term=YE3977A
YE3978	YE3978		YE3978	4323426	4324343	-	hypothetical protein		gene	gene3938	http://www.ncbi.nlm.nih.gov/gene/?term=YE3978
YE3979	YE3979	mrcA	mrcA	4324418	4326973	+	peptidoglycan synthetase	bifunctional murein transglycosylase/murein transpeptidase%3B penicillin-binding protein 1A%3B involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation%3B penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits	gene	gene3939	http://www.ncbi.nlm.nih.gov/gene/?term=YE3979
YE3980	YE3980	nudE	nudE	4327043	4327600	-	ADP-ribose diphosphatase NudE	ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose	gene	gene3940	http://www.ncbi.nlm.nih.gov/gene/?term=YE3980
YE3982	YE3982		YE3982	4328156	4330303	+	hypothetical protein		gene	gene3941	http://www.ncbi.nlm.nih.gov/gene/?term=YE3982
YE3983	YE3983		YE3983	4330551	4331228	+	hypothetical protein		gene	gene3942	http://www.ncbi.nlm.nih.gov/gene/?term=YE3983
YE3984	YE3984	hslR	hslR	4331265	4331672	+	heat shock protein 15		gene	gene3943	http://www.ncbi.nlm.nih.gov/gene/?term=YE3984
YE3985	YE3985	hslO	hslO	4331702	4332616	+	Hsp33-like chaperonin	becomes active under oxidative stress%3B four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive%3B oxidative stress results in oxidized cysteines%2C release of zinc%2C and binding of Hsp33 to aggregation-prone proteins%3B forms dimers and higher order oligomers	gene	gene3944	http://www.ncbi.nlm.nih.gov/gene/?term=YE3985
YE3986	YE3986	pck	pck	4332816	4334435	+	phosphoenolpyruvate carboxykinase	PEP carboxykinase%3B PEP carboxylase%3B PEPCK%3B catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP	gene	gene3945	http://www.ncbi.nlm.nih.gov/gene/?term=YE3986
YE3987	YE3987	glpR	glpR	4334717	4335475	-	DNA-binding transcriptional repressor GlpR	represses the glpD%2C glpFK%2C glpTQ%2C and glpACB operons involved in glycerol-3-phosphate metabolism	gene	gene3946	http://www.ncbi.nlm.nih.gov/gene/?term=YE3987
YE3988	YE3988	glpG	glpG	4335511	4336347	-	intramembrane serine protease GlpG	protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity	gene	gene3947	http://www.ncbi.nlm.nih.gov/gene/?term=YE3988
YE3989	YE3989	glpE	glpE	4336417	4336743	-	thiosulfate sulfurtransferase	belongs to rhodanese family%3B thiosulfate thiotransferase%3B in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency%3B contains an active site cysteine	gene	gene3948	http://www.ncbi.nlm.nih.gov/gene/?term=YE3989
YE3990	YE3990	malT	malT	4336909	4339620	-	transcriptional regulator MalT	Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides	gene	gene3949	http://www.ncbi.nlm.nih.gov/gene/?term=YE3990
YE3991	YE3991	malP	malP	4339939	4342344	+	phosphorylase		gene	gene3950	http://www.ncbi.nlm.nih.gov/gene/?term=YE3991
YE3992	YE3992	malQ	malQ	4342357	4344453	+	4-alpha-glucanotransferase	amylomaltase%3B acts to release glucose from maltodextrins	gene	gene3951	http://www.ncbi.nlm.nih.gov/gene/?term=YE3992
YE3993	YE3993		YE3993	4344796	4345371	-	DNA uptake protein	cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source	gene	gene3952	http://www.ncbi.nlm.nih.gov/gene/?term=YE3993
YE3994	YE3994		YE3994	4345431	4346114	-	gluconate periplasmic binding protein	involved in high-affinity gluconate transport	gene	gene3953	http://www.ncbi.nlm.nih.gov/gene/?term=YE3994
YE3995	YE3995	bioH	bioH	4346346	4347122	+	biotin biosynthesis protein		gene	gene3954	http://www.ncbi.nlm.nih.gov/gene/?term=YE3995
YE3996	YE3996		YE3996	4347237	4347500	+	hypothetical protein		gene	gene3955	http://www.ncbi.nlm.nih.gov/gene/?term=YE3996
YE3997	YE3997		YE3997	4347538	4347786	-	hypothetical protein		gene	gene3956	http://www.ncbi.nlm.nih.gov/gene/?term=YE3997
YE3998	YE3998	feoB	feoB	4347800	4350115	-	ferrous iron transport protein B	cytoplasmic membrane ferrous uptake system permease%3B mutations disrupt the ability of Escherichia coli to take up ferrous iron%3B GTP-binding protein which requires GTP for efficient iron(II) uptake	gene	gene3957	http://www.ncbi.nlm.nih.gov/gene/?term=YE3998
YE3999	YE3999	feoA	feoA	4350209	4350433	-	ferrous iron transport protein A		gene	gene3958	http://www.ncbi.nlm.nih.gov/gene/?term=YE3999
YE4000	YE4000	teX	teX	4351068	4353452	-	transcription accessory protein	Highly similar to Bordetella pertussis Tex protein SWALL:TEX_BORPE (SWALL:Q45388) (791 aa) fasta scores: E(): 4.3e-161%2C 59.32 38d in 767 aa%2C and to Escherichia coli protein YhgF or b3407 SWALL:YHGF_ECOLI (SWALL:P46837) (773 aa) fasta scores: E(): 0%2C 81.86 38d in 794 aa	gene	gene3959	http://www.ncbi.nlm.nih.gov/gene/?term=YE4000
YE4001	YE4001		YE4001	4353492	4354109	-	MFS family transporter	Similar to Sulfolobus tokodaii hypothetical protein St2409 st2409 SWALL:Q96XV9 (EMBL:AP000990) (375 aa) fasta scores: E(): 2.7e-05%2C 22.59 38d in 177 aa	gene	gene3960	http://www.ncbi.nlm.nih.gov/gene/?term=YE4001
YE4002	YE4002		YE4002	4354121	4354702	-	hypothetical protein	no significant database matches	gene	gene3961	http://www.ncbi.nlm.nih.gov/gene/?term=YE4002
YE4003	YE4003	greB	greB	4355133	4355630	+	transcription elongation factor GreB	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus	gene	gene3962	http://www.ncbi.nlm.nih.gov/gene/?term=YE4003
YE4004	YE4004	ompR	ompR	4355751	4356470	+	osmolarity response regulator	part of two-component system EnvZ/OmpR%3B regulates transcription of outer membrane porin genes ompC/F%3B under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR%3B the result is increased expression of ompC and repression of ompF%3B also functions in regulation of other genes%3B forms dimers upon phosphorylation	gene	gene3963	http://www.ncbi.nlm.nih.gov/gene/?term=YE4004
YE4005	YE4005	envZ	envZ	4356467	4357819	+	osmolarity sensor protein	membrane-localized osmosensor%3B histidine kinase%3B in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR	gene	gene3964	http://www.ncbi.nlm.nih.gov/gene/?term=YE4005
YE4008	YE4008	glpD	glpD	4358593	4360107	+	glycerol-3-phosphate dehydrogenase	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions%3B anaerobic expression is repressed by the arcAB system%3B converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8%3B associates with the cytoplasmic membrane	gene	gene3965	http://www.ncbi.nlm.nih.gov/gene/?term=YE4008
YE4009	YE4009	glgP	glgP	4360202	4362649	-	glycogen phosphorylase		gene	gene3966	http://www.ncbi.nlm.nih.gov/gene/?term=YE4009
YE4010	YE4010	glgA	glgA	4362695	4364125	-	glycogen synthase	catalyzes the formation of alpha-1%2C4-glucan chains from ADP-glucose	gene	gene3967	http://www.ncbi.nlm.nih.gov/gene/?term=YE4010
YE4011	YE4011	glgC	glgC	4364303	4365589	-	glucose-1-phosphate adenylyltransferase	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate	gene	gene3968	http://www.ncbi.nlm.nih.gov/gene/?term=YE4011
YE4012	YE4012	glgX	glgX	4365599	4367587	-	glycogen debranching protein	catalyzes the hydrolysis of the alpha-1%2C6-glucosidic linkages in partially depolymerized glycogen	gene	gene3969	http://www.ncbi.nlm.nih.gov/gene/?term=YE4012
YE4013	YE4013	glgB	glgB	4367589	4369772	-	glycogen branching protein	catalyzes the transfer of a segment of a 1%2C4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain	gene	gene3970	http://www.ncbi.nlm.nih.gov/gene/?term=YE4013
YE4014	YE4014		YE4014	4370269	4371966	+	hypothetical protein		gene	gene3971	http://www.ncbi.nlm.nih.gov/gene/?term=YE4014
YE4015	YE4015	budR	budR	4371963	4372859	-	transcriptional regulator	Similar to Klebsiella terrigena bud operon%2C2%2C3-butanediol synthesis%2C transcriptional regulator budR SWALL:BUDR_KLETE (SWALL:P52666) (290 aa) fasta scores: E(): 5.6e-56%2C 53.35 38d in 283 aa%2C and to Salmonella typhimurium putative transcriptional regulator stmr or stm3121 SWALL:Q9RQ20 (EMBL:AF134978) (292 aa) fasta scores: E(): 1.5e-44%2C 42.95 38d in 291 aa. Note this could be a partner to YE4014 potential two-component histidine kinase~Possible regulator of budA and budB	gene	gene3972	http://www.ncbi.nlm.nih.gov/gene/?term=YE4015
YE4016	YE4016	budA	budA	4372967	4373752	+	alpha-acetolactate decarboxylase	Similar to Enterobacter aerogenes alpha-acetolactate decarboxylase%2C involved in 2%2C3-butanediol synthesis%2C BudA or aldC SWALL:ALDC_ENTAE (SWALL:P05361) (260 aa) fasta scores: E(): 9.9e-66%2C 60.15 id in 256 aa%2C and to Bacillus subtilis alpha-acetolactate decarboxylase alsD SWALL:ALDC_BACSU (SWALL:Q04777) (255 aa) fasta scores: E(): 4.3e-41%2C 45.37 38d in 238 aa%2C and to Lactococcus lactis alpha-acetolactate decarboxylase aldb or ll1228 SWALL:ALDC_LACLA (SWALL:P95676) (236 aa) fasta scores: E(): 8.8e-26%2C 34.19 38d in 231 aa	gene	gene3973	http://www.ncbi.nlm.nih.gov/gene/?term=YE4016
YE4017	YE4017	budB	budB	4373792	4375471	+	acetolactate synthase	catalyzes the formation of 2-acetolactate from pyruvate in stationary phase	gene	gene3974	http://www.ncbi.nlm.nih.gov/gene/?term=YE4017
YE4018	YE4018	asd	asd	4375896	4376999	-	aspartate-semialdehyde dehydrogenase	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde	gene	gene3975	http://www.ncbi.nlm.nih.gov/gene/?term=YE4018
YE4019	YE4019	yhgN	yhgN	4377235	4377819	+	dITP- and XTP- hydrolase	YhgN%3B Ec0197%3B hydrolyzes nucleoside triphosphates with an O6 atom-containing purine base to nucleoside monophosphate and pyrophosphate%3B seems to play a role in the elimination of aberrant purine-derived nucleotides containing the 6-keto group%3B shows preference for deoxyinosine triphosphate and xanthosine triphosphate over standard nucleoside triphosphates (dATP%2C dCTP%2C dGTP%2C and dTTP)	gene	gene3976	http://www.ncbi.nlm.nih.gov/gene/?term=YE4019
YE4020	YE4020		YE4020	4377936	4378448	-	gluconokinase		gene	gene3977	http://www.ncbi.nlm.nih.gov/gene/?term=YE4020
YE4021	YE4021	gntM	gntM	4378670	4379986	+	gluconate permease		gene	gene3978	http://www.ncbi.nlm.nih.gov/gene/?term=YE4021
YE4022	YE4022	gntR	gntR	4380011	4381006	-	gluconate utilization system Gnt-I transcriptional repressor		gene	gene3979	http://www.ncbi.nlm.nih.gov/gene/?term=YE4022
YE4023	YE4023		YE4023	4381299	4381994	-	hypothetical protein		gene	gene3980	http://www.ncbi.nlm.nih.gov/gene/?term=YE4023
YE4024	YE4024		YE4024	4382381	4382881	+	hypothetical protein	Similar to Salmonella typhi putative acetyltransferase sty4265 SWALL:Q8Z238 (EMBL:AL627281) (162 aa) fasta scores: E(): 2.2e-35%2C 53.37 38d in 163 aa%2Cand to Escherichia coli%2C and Escherichia coli O157:H7 spermidine n(1)-acetyltransferase speg or b1584 or z2571 or ecs2290 SWALL:ATDA_ECOLI (SWALL:P37354) (185 aa) fasta scores: E(): 5.4e-05%2C 29.63 38d in 162 aa	gene	gene3982	http://www.ncbi.nlm.nih.gov/gene/?term=YE4024
YE4025	YE4025		YE4025	4382949	4383845	-	hypothetical protein	Similar to Bacillus subtilis IolE protein iolE or e83E SWALL:IOLE_BACSU (SWALL:P42416) (297 aa) fasta scores: E(): 5.3e-53%2C 47.11 38d in 295 aa%2C and to Rhizobium leguminosarum MocC mocC SWALL:O85770 (EMBL:AF076240) (295 aa) fasta scores: E(): 1.6e-41%2C 40.2 id in 296 aa	gene	gene3983	http://www.ncbi.nlm.nih.gov/gene/?term=YE4025
YE4026	YE4026	idh	idh	4383979	4384992	-	myo-inositol 2-dehydrogenase	Similar to Bacillus subtilis myo-inositol 2-dehydrogenase idh or iolG or e83G SWALL:MI2D_BACSU (SWALL:P26935) (344 aa) fasta scores: E(): 2.2e-83%2C 60.71 id in 336 aa%2C and to Ralstonia solanacearum putative oxidoreductase myo-inositol 2-dehydrogenase signal peptide protein iolg or rsc1246 or rs02754 SWALL:Q8XZZ9 (EMBL:AL646063) (337 aa) fasta scores: E(): 4.6e-94%2C69.85 38d in 335 aa	gene	gene3984	http://www.ncbi.nlm.nih.gov/gene/?term=YE4026
YE4027	YE4027		YE4027	4385072	4387012	-	thiamine pyrophosphate-dependent protein		gene	gene3985	http://www.ncbi.nlm.nih.gov/gene/?term=YE4027
YE4028	YE4028		YE4028	4387501	4389402	+	carbohydrate kinase		gene	gene3986	http://www.ncbi.nlm.nih.gov/gene/?term=YE4028
YE4029	YE4029		YE4029	4389687	4390520	+	hypothetical protein		gene	gene3987	http://www.ncbi.nlm.nih.gov/gene/?term=YE4029
YE4030	YE4030		YE4030	4390615	4391439	-	hypothetical protein		gene	gene3988	http://www.ncbi.nlm.nih.gov/gene/?term=YE4030
YE4031	YE4031		YE4031	4391495	4393000	-	aldehyde dehydrogenase		gene	gene3989	http://www.ncbi.nlm.nih.gov/gene/?term=YE4031
YE4032	YE4032		YE4032	4393545	4394759	-	hypothetical protein	Similar to Ralstonia solanacearum probable transmembrane protein rsp0078 or rs05543 SWALL:Q8XTM8 (EMBL:AL646076) (399 aa) fasta scores: E(): 1e-52%2C 44.61 id in 390 aa~Putative membrane transport protein	gene	gene3990	http://www.ncbi.nlm.nih.gov/gene/?term=YE4032
YE4033	YE4033		YE4033	4394855	4395808	+	LysR family transcriptional regulator	Similar to Pseudomonas aeruginosa transcriptional regulator ptxR or pa2258 SWALL:PTXR_PSEAE (SWALL:P72131) (312 aa) fasta scores: E(): 9.2e-24%2C 30.9 38d in 288 aa%2Cand to Synechocystis sp. transcriptional regulator slr1245 SWALL:P73778 (EMBL:D90909) (302 aa) fasta scores: E(): 4.8e-30%2C 32.64 38d in 291 aa	gene	gene3991	http://www.ncbi.nlm.nih.gov/gene/?term=YE4033
YE4034	YE4034		YE4034	4396053	4396757	+	hypothetical protein		gene	gene3992	http://www.ncbi.nlm.nih.gov/gene/?term=YE4034
YE4035	YE4035	btuR	btuR	4397017	4397607	-	cob(i)alamin adenosyltransferase	Similar to Escherichia coli cob btuR or cobA or b1270 SWALL:BTUR_ECOLI (SWALL:P13040) (196 aa) fasta scores: E(): 2.6e-52%2C 67.34 38d in 196 aa~Similar to Yersinia pestis cob btuR or ypo2214 SWALL:Q8ZEF9 (EMBL:AJ414151) (196 aa) fasta scores: E(): 1.8e-53%2C 66.32 38d in 196 aa~possibly involved in the metabolism of adenosylcobalamin	gene	gene3993	http://www.ncbi.nlm.nih.gov/gene/?term=YE4035
YE4036	YE4036	fumB	fumB	4397629	4399275	-	fumarate hydratase class I%2C anaerobic	Similar to Yersinia pestis fumarate hydratase%2Cclass I FumA or ypo3335 SWALL:Q8ZBR9 (EMBL:AJ414156) (547 aa) fasta scores: E(): 8.5e-169%2C 74.35 38d in 546 aa~Similar to Escherichia coli fumarate hydratase class I%2C anaerobic fumB or b4122 SWALL:FUMB_ECOLI (SWALL:P14407) (548 aa) fasta scores: E(): 1.9e-161%2C70.98 38d in 548 aa~regulated by FNR in E.coli	gene	gene3994	http://www.ncbi.nlm.nih.gov/gene/?term=YE4036
YE4037	YE4037		YE4037	4399544	4400464	-	LysR family transcriptional regulator	Similar to Escherichia coli O157:H7 putative lysR-like transcriptional regulator z0885 or ecs0755 SWALL:Q8X4W1 (EMBL:AE005251) (301 aa) fasta scores: E(): 1.7e-72%2C 63.17 38d in 296 aa~Similar to Escherichia coli%2C and Escherichia coli O157:H7 glycine cleavage system transcriptional activator gcvA or b2808 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 1.3e-26%2C 32.78 id in 302 aa	gene	gene3995	http://www.ncbi.nlm.nih.gov/gene/?term=YE4037
YE4038	YE4038	cobA	cobA	4400906	4401688	+	uroporphyrin-III C-methyltransferase	Similar to Bacillus megaterium uroporphyrin-III C-methyltransferase CobA SWALL:SUMT_BACME (SWALL:P29928) (238 aa) fasta scores: E(): 6.5e-40%2C 47.89 38d in 238 aa%2Cand to Listeria innocua hypothetical protein Lin1164 lin1164 SWALL:Q92CK7 (EMBL:AL596167) (493 aa) fasta scores: E(): 1.2e-50%2C 52.75 38d in 254 aa	gene	gene3996	http://www.ncbi.nlm.nih.gov/gene/?term=YE4038
YE4039	YE4039	pduX	pduX	4401710	4402591	+	PduX protein	Similar to Salmonella typhimurium%2C and Salmonella enterica subsp. enterica serovar Typhimurium propanediol utilization pduX or stm2058 SWALL:Q9XDM4 (EMBL:AE008790) (300 aa) fasta scores: E(): 1.5e-54%2C 53.28 38d in 289 aa~involved in propanediol utilization	gene	gene3997	http://www.ncbi.nlm.nih.gov/gene/?term=YE4039
YE4040	YE4040	mamA	mamA	4403047	4403493	+	methylaspartate mutase subunit S	converts methylaspartate to L-glutamate	gene	gene3998	http://www.ncbi.nlm.nih.gov/gene/?term=YE4040
YE4041	YE4041	mutL	mutL	4403490	4404881	+	glutamate mutase	Similar to Escherichia coli O157:H7 z0894 protein z0894 or ecs0763 SWALL:Q8X985 (EMBL:AE005251) (462 aa) fasta scores: E(): 3.5e-125%2C 66.16 38d in 461 aa%2C and to Clostridium tetanomorphum MutL protein mutL SWALL:MUTL_CLOTT (SWALL:Q05491) (462 aa) fasta scores: E(): 4.7e-40%2C 33.76 38d in 468 aa	gene	gene3999	http://www.ncbi.nlm.nih.gov/gene/?term=YE4041
YE4042	YE4042	mutE	mutE	4404896	4406341	+	methylaspartate mutase subunit E	Similar to Clostridium tetanomorphum methylaspartate mutase E chain mutE SWALL:GLME_CLOTT (SWALL:Q05509) (485 aa) fasta scores: E(): 1.1e-114%2C58.38 38d in 483 aa%2C and to Citrobacter amalonaticus glutamate mutase SWALL:O66144 (EMBL:AB005294) (481 aa) fasta scores: E(): 1.2e-163%2C 82.32 38d in 481 aa~High similarity to B12-dependent glutamate mutases	gene	gene4000	http://www.ncbi.nlm.nih.gov/gene/?term=YE4042
YE4043	YE4043		YE4043	4406341	4407585	+	methylaspartate ammonia-lyase	Similar to Clostridium tetanomorphum methylaspartate ammonia-lyase SWALL:MAAL_CLOTT (SWALL:Q05514) (413 aa) fasta scores: E(): 7.2e-82%2C 54.54 id in 407 aa%2C and to Citrobacter amalonaticus 3-methylaspartate ammonia-lyase SWALL:O66145 (EMBL:AB005294) (413 aa) fasta scores: E(): 1.5e-131%2C81.31 38d in 412 aa	gene	gene4001	http://www.ncbi.nlm.nih.gov/gene/?term=YE4043
YE4044	YE4044		YE4044	4407587	4408960	+	hypothetical protein	Similar to Citrobacter amalonaticus DNA for 3-methylaspartate ammonia-lyase%2C glutamate mutase SWALL:O66146 (EMBL:AB005294) (295 aa) fasta scores: E(): 9.8e-97%2C 86.62 38d in 284 aa%2C and to Escherichia coli O157:H7 hypothetical protein z0891 z0891 or ecs0760 SWALL:Q8X991 (EMBL:AE005251) (456 aa) fasta scores: E(): 9.3e-140%2C 77.02 38d in 457 aa	gene	gene4002	http://www.ncbi.nlm.nih.gov/gene/?term=YE4044
YE4045	YE4045		YE4045	4408957	4409274	+	hypothetical protein	Similar to Escherichia coli O157:H7 hypothetical protein z0890 or ecs0759 SWALL:Q8X998 (EMBL:AE005251) (105 aa) fasta scores: E(): 2.1e-29%2C 70.47 38d in 105 aa	gene	gene4003	http://www.ncbi.nlm.nih.gov/gene/?term=YE4045
YE4046	YE4046		YE4046	4409436	4410761	+	sodium-dicarboxylic acid transporter	Similar to Escherichia coli O157:H7 putative symport protein z0888 or ecs0758 SWALL:Q8X4W0 (EMBL:AE005251) (426 aa) fasta scores: E(): 1e-120%2C 76.83 id in 423 aa%2C and to Bacillus stearothermophilus proton/sodium-glutamate symport protein gltT SWALL:GLTT_BACST (SWALL:P24943) (421 aa) fasta scores: E(): 8.4e-53%2C 38.91 38d in 424 aa~High similarity to proton/sodium-glutamate symporters. Contains motif found in sodium-dicarboxylic acid transporters. Position adjacent to putative glutamate mutase genes may indicate that a glutamate transporter is more likely.	gene	gene4004	http://www.ncbi.nlm.nih.gov/gene/?term=YE4046
YE4047	YE4047		YE4047	4410848	4412047	-	hypothetical protein		gene	gene4005	http://www.ncbi.nlm.nih.gov/gene/?term=YE4047
YE4048	YE4048		YE4048	4412359	4413855	+	phosphate transport protein		gene	gene4006	http://www.ncbi.nlm.nih.gov/gene/?term=YE4048
YE4049	YE4049	uspB	uspB	4413962	4414297	-	universal stress protein UspB	ppGpp-dependent%2C membrane associated%2C stress protein produced under conditions of nutrient deprivation%2C osmotic shock and oxidative stress	gene	gene4007	http://www.ncbi.nlm.nih.gov/gene/?term=YE4049
YE4050	YE4050	uspA	uspA	4414990	4415436	+	universal stress protein A		gene	gene4008	http://www.ncbi.nlm.nih.gov/gene/?term=YE4050
YE4051	YE4051	gdhA	gdhA	4415700	4417043	+	glutamate dehydrogenase	converts 2-oxoglutarate to glutamate%3B in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction%3B uses NADPH%3B forms a homohexamer	gene	gene4009	http://www.ncbi.nlm.nih.gov/gene/?term=YE4051
YE4052	YE4052		YE4052	4417247	4418725	+	metalloprotease		gene	gene4010	http://www.ncbi.nlm.nih.gov/gene/?term=YE4052
YE4053	YE4053		YE4053	4418851	4419609	-	methyltransferase	predicted SAM-dependent methyltransferase	gene	gene4011	http://www.ncbi.nlm.nih.gov/gene/?term=YE4053
YE4054	YE4054	opdA	opdA	4419613	4421655	-	oligopeptidase A		gene	gene4012	http://www.ncbi.nlm.nih.gov/gene/?term=YE4054
YE4055	YE4055		YE4055	4421992	4422834	+	hypothetical protein		gene	gene4013	http://www.ncbi.nlm.nih.gov/gene/?term=YE4055
YE4057	YE4057	gor	gor	4423078	4424430	+	glutathione reductase	catalyzes the reduction of 2 glutathione to glutathione disulfide%3B maintains high levels of reduced glutathione in the cytosol%3B involved in redox regulation and oxidative defense	gene	gene4014	http://www.ncbi.nlm.nih.gov/gene/?term=YE4057
YE4059	YE4059	yapE	yapE	4424724	4427969	-	autotransporter protein		gene	gene4015	http://www.ncbi.nlm.nih.gov/gene/?term=YE4059
YE4060	YE4060		YE4060	4428381	4429370	+	hypothetical protein		gene	gene4016	http://www.ncbi.nlm.nih.gov/gene/?term=YE4060
YE4061	YE4061	cdh	cdh	4429436	4430158	+	CDP-diacylglycerol pyrophosphatase		gene	gene4017	http://www.ncbi.nlm.nih.gov/gene/?term=YE4061
YE4062	YE4062		YE4062	4430163	4432283	-	hypothetical protein		gene	gene4018	http://www.ncbi.nlm.nih.gov/gene/?term=YE4062
YE4063	YE4063		YE4063	4432402	4433178	-	EAL domain-containing protein	in Escherichia coli this protein is involved in flagellar function	gene	gene4019	http://www.ncbi.nlm.nih.gov/gene/?term=YE4063
YE4064	YE4064		YE4064	4433428	4433628	+	tautomerase		gene	gene4020	http://www.ncbi.nlm.nih.gov/gene/?term=YE4064
YE4065	YE4065	kdgK	kdgK	4433773	4434717	+	2-dehydro-3-deoxygluconokinase		gene	gene4021	http://www.ncbi.nlm.nih.gov/gene/?term=YE4065
YE4066	YE4066		YE4066	4434877	4436382	-	insulinase family protease		gene	gene4022	http://www.ncbi.nlm.nih.gov/gene/?term=YE4066
YE4067	YE4067	dctA	dctA	4436866	4438158	-	C4-dicarboxylate transporter DctA	involved in the transport of C4-dicarboxylates across the membrane	gene	gene4023	http://www.ncbi.nlm.nih.gov/gene/?term=YE4067
YE4068	YE4068		YE4068	4438536	4439015	-	hypothetical protein		gene	gene4024	http://www.ncbi.nlm.nih.gov/gene/?term=YE4068
YE4069	YE4069	pelY	pelY	4439140	4440858	-	periplasmic pectate lyase		gene	gene4025	http://www.ncbi.nlm.nih.gov/gene/?term=YE4069
YE4070	YE4070		YE4070	4440935	4441639	-	hypothetical protein		gene	gene4026	http://www.ncbi.nlm.nih.gov/gene/?term=YE4070
YE4071	YE4071		YE4071	4442362	4443891	-	hypothetical protein		gene	gene4027	http://www.ncbi.nlm.nih.gov/gene/?term=YE4071
YE4072	YE4072	bcsC	bcsC	4444122	4447607	-	cellulose synthase subunit BcsC	cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium%3B the cellulose biosynthesis genes bcsA%2C bcsB%2C bcsZ and bcsC are constitutively transcribed%2C however%2C cellulose synthesis is dependent on the expression of adrA	gene	gene4028	http://www.ncbi.nlm.nih.gov/gene/?term=YE4072
YE4072A	YE4072A	bcsZ	bcsZ	4447589	4448716	-	endo-1%2C4-D-glucanase	catalyzes the hydrolysis of 1%2C4-beta-D-glucosidic linkages in cellulose%2C lichenin and cereal beta-D-glucans	gene	gene4029	http://www.ncbi.nlm.nih.gov/gene/?term=YE4072A
YE4073	YE4073	bcsB	bcsB	4448722	4451028	-	cellulose synthase regulator protein	binds the cellulose synthase activator%2C bis-(3'-5') cyclic diguanylic acid (c-di-GMP)	gene	gene4030	http://www.ncbi.nlm.nih.gov/gene/?term=YE4073
YE4074	YE4074	bcsA	bcsA	4451036	4453663	-	cellulose synthase catalytic subunit	polymerizes uridine 5'-diphosphate glucose to cellulose%3B acts with BcsB%2C BcsZ and BcsC in cellulose biosynthesis	gene	gene4031	http://www.ncbi.nlm.nih.gov/gene/?term=YE4074
YE4075	YE4075	bcsF	bcsF	4453660	4454397	-	hypothetical protein	Similar to Salmonella typhi hypothetical protein yhjQ or sty4180 SWALL:Q8Z292 (EMBL:AL627281) (250 aa) fasta scores: E(): 4.8e-54%2C 58.13 38d in 246 aa%2C and to Pseudomonas fluorescens WssJ SWALL:AAL71850 (EMBL:AY074776) (324 aa) fasta scores: E(): 1.5e-13%2C28.76 38d in 226 aa	gene	gene4032	http://www.ncbi.nlm.nih.gov/gene/?term=YE4075
YE4076	YE4076		YE4076	4454401	4454592	-	hypothetical protein		gene	gene4033	http://www.ncbi.nlm.nih.gov/gene/?term=YE4076
YE4077	YE4077	bcsE	bcsE	4454789	4456348	+	hypothetical protein	Similar to Salmonella typhimurium putative cytoplasmic protein yhjS or stm3622 or bcsE SWALL:CAC86200 (EMBL:AE008867) (523 aa) fasta scores: E(): 2.3e-91%2C45.72 38d in 514 aa%2C and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 3.9e-87%2C 44.37 38d in 507 aa	gene	gene4034	http://www.ncbi.nlm.nih.gov/gene/?term=YE4077
YE4078	YE4078	bcsG	bcsG	4456536	4458188	+	hypothetical protein	Similar to Salmonella typhimurium%2C and Salmonella typhi putative inner membrane protein yhju or stm3624 or sty4176 or bcsG SWALL:CAC86202 (EMBL:AE008867) (559 aa) fasta scores: E(): 7.8e-141%2C 62.79 38d in 559 aa%2C and to Escherichia coli hypothetical protein yhju yhju or b3538 SWALL:YHJU_ECOLI (SWALL:P37659) (559 aa) fasta scores: E(): 1.1e-138%2C 62.52 38d in 547 aa	gene	gene4035	http://www.ncbi.nlm.nih.gov/gene/?term=YE4078
YE4079	YE4079	dppE	dppE	4458531	4459388	-	dipeptide transport ATP-binding protein		gene	gene4036	http://www.ncbi.nlm.nih.gov/gene/?term=YE4079
YE4080	YE4080	dppD	dppD	4459550	4460530	-	dipeptide transporter ATP-binding subunit	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF	gene	gene4037	http://www.ncbi.nlm.nih.gov/gene/?term=YE4080
YE4081	YE4081	dppC	dppC	4460544	4461446	-	dipeptide transporter		gene	gene4038	http://www.ncbi.nlm.nih.gov/gene/?term=YE4081
YE4082	YE4082	dppB	dppB	4461457	4462476	-	dipeptide transporter permease DppB	transports peptides consisting of two or three amino acids	gene	gene4039	http://www.ncbi.nlm.nih.gov/gene/?term=YE4082
YE4083	YE4083	dppA	dppA	4462836	4464443	-	dipeptide transport protein		gene	gene4040	http://www.ncbi.nlm.nih.gov/gene/?term=YE4083
YE4084	YE4084		YE4084	4465126	4466508	-	hypothetical protein		gene	gene4041	http://www.ncbi.nlm.nih.gov/gene/?term=YE4084
YE4085	YE4085		YE4085	4466537	4468162	-	hemolysin activator protein		gene	gene4042	http://www.ncbi.nlm.nih.gov/gene/?term=YE4085
YE4086	YE4086		YE4086	4468292	4469404	-	hypothetical protein	Similar to Yersinia pestis putative exported protein ypo4006 or y3823 SWALL:Q8ZA16 (EMBL:AJ414160) (463 aa) fasta scores: E(): 4.2e-44%2C 46.51 38d in 344 aa. Also weakly similar in parts to many hemagglutinin/hemolysin-related proteins including: Neisseria meningitidis nmb1779 SWALL:Q9JY23 (EMBL:AE002527) (1995 aa) fasta scores: E(): 1.9e-13%2C33.12 38d in 317 aa and to Serratia marcescens hemolysin precursor ShlA SWALL:HLYA_SERMA (SWALL:P15320) (1608 aa) fasta scores: E(): 4.5e-11%2C 26.01 38d in 319 aa	gene	gene4043	http://www.ncbi.nlm.nih.gov/gene/?term=YE4086
YE4087	YE4087	uhpC	uhpC	4469823	4471154	-	regulatory protein UhpC	membrane protein regulates uhpT expression	gene	gene4045	http://www.ncbi.nlm.nih.gov/gene/?term=YE4087
YE4088	YE4088	uhpB	uhpB	4471248	4472777	-	sensory histidine kinase UhpB	Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph	gene	gene4046	http://www.ncbi.nlm.nih.gov/gene/?term=YE4088
YE4089	YE4089	uhpA	uhpA	4472774	4473364	-	two-component system response regulator		gene	gene4047	http://www.ncbi.nlm.nih.gov/gene/?term=YE4089
YE4090	YE4090	yhjW	yhjW	4473476	4475167	-	phosphoethanolamine transferase	catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide	gene	gene4048	http://www.ncbi.nlm.nih.gov/gene/?term=YE4090
YE4091	YE4091		YE4091	4475427	4475852	-	osmotic/stress-like protein	Similar to Ralstonia solanacearum probable organic hydroperoxide resistance protein ohr or rsp1107 or rs02615 SWALL:Q8XQW1 (EMBL:AL646082) (141 aa) fasta scores: E(): 4.3e-36%2C 67.85 38d in 140 aa%2C and to Acinetobacter calcoaceticus hypothetical 15.2 kDa protein in xcpr 3'region SWALL:YXC2_ACICA (SWALL:P70736) (143 aa) fasta scores: E(): 1.5e-34%2C 70 38d in 140 aa	gene	gene4049	http://www.ncbi.nlm.nih.gov/gene/?term=YE4091
YE4092	YE4092		YE4092	4476124	4477587	-	hypothetical protein		gene	gene4050	http://www.ncbi.nlm.nih.gov/gene/?term=YE4092
YE4093	YE4093		YE4093	4477855	4479252	-	amino acid permease		gene	gene4051	http://www.ncbi.nlm.nih.gov/gene/?term=YE4093
YE4094	YE4094	hutH	hutH	4479362	4480885	-	histidine ammonia-lyase	catalyzes the degradation of histidine to urocanate and ammmonia	gene	gene4052	http://www.ncbi.nlm.nih.gov/gene/?term=YE4094
YE4095	YE4095	hutU	hutU	4480894	4482585	-	urocanate hydratase	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism	gene	gene4053	http://www.ncbi.nlm.nih.gov/gene/?term=YE4095
YE4097	YE4097		YE4097	4482954	4483127	-	hypothetical protein	Hypothetical protein with no significant homology to proteins in the database	gene	gene4054	http://www.ncbi.nlm.nih.gov/gene/?term=YE4097
YE4098	YE4098	manA	manA	4483223	4484416	-	mannose-6-phosphate isomerase	Similar to Escherichia coli mannose-6-phosphate isomerase manA or pmi or b1613 SWALL:MANA_ECOLI (SWALL:P00946) (391 aa) fasta scores: E(): 2.7e-54%2C 42.96 id in 391 aa%2C and to Vibrio cholerae mannose-6-phosphate isomerase vc1827 SWALL:Q9KR20 (EMBL:AE004259) (388 aa) fasta scores: E(): 6.1e-66%2C 48.19 38d in 388 aa%2C and to Yersinia pestis mannose-6-phosphate isomerase manA or ypo2263 SWALL:Q8ZEB7 (EMBL:AJ414151) (391 aa) fasta scores: E(): 8.2e-56%2C 44.13 38d in 392 aa	gene	gene4055	http://www.ncbi.nlm.nih.gov/gene/?term=YE4098
YE4099	YE4099	bglA	bglA	4484438	4485838	-	beta-glucosidase	Similar to Clostridium perfringens beta-glucosidase cpe2309 SWALL:Q8XI15 (EMBL:AP003193) (459 aa) fasta scores: E(): 2.6e-103%2C 52.72 38d in 459 aa%2C and to Caldocellum saccharolyticum beta-glucosidase a bglA SWALL:BGLS_CALSA (SWALL:P10482) (455 aa) fasta scores: E(): 3.2e-46%2C 32.03 38d in 462 aa	gene	gene4056	http://www.ncbi.nlm.nih.gov/gene/?term=YE4099
YE4100	YE4100		YE4100	4485909	4488104	-	beta-1%2C4 mannanase	Similar to Thermotoga neapolitana beta-mannosidase manB or man5 SWALL:AAK53459 (EMBL:Y17981) (666 aa) fasta scores: E(): 1.5e-06%2C 25.88 38d in 367 aa	gene	gene4057	http://www.ncbi.nlm.nih.gov/gene/?term=YE4100
YE4101	YE4101		YE4101	4488112	4489446	-	outer membrane porin	Similar to Salmonella typhimurium sucrose porin precursor scrY SWALL:SCRY_SALTY (SWALL:P22340) (505 aa) fasta scores: E(): 7.4e-24%2C 28.85 38d in 447 aa%2C and to Escherichia coli maltoporin precursor lamB or malB or b4036 SWALL:LAMB_ECOLI (SWALL:P02943) (446 aa) fasta scores: E(): 1.4e-22%2C 29.53 38d in 474 aa	gene	gene4058	http://www.ncbi.nlm.nih.gov/gene/?term=YE4101
YE4102	YE4102		YE4102	4489690	4490964	-	cellobiose-specific phosphotransferase	Similar to Vibrio cholerae pts system%2Ccellobiose-specific IIc component vc1282 SWALL:Q9KSH4 (EMBL:AE004207) (446 aa) fasta scores: E(): 3.3e-63%2C36.97 38d in 430 aa%2C and to Bacillus stearothermophilus pts system%2C cellobiose-specific iic component celB SWALL:PTCC_BACST (SWALL:Q45400) (451 aa) fasta scores: E(): 9.7e-33%2C 31.17 38d in 433 aa~Probably involved in the uptake of cellobiose	gene	gene4059	http://www.ncbi.nlm.nih.gov/gene/?term=YE4102
YE4103	YE4103		YE4103	4491149	4491463	+	pts system cellobiose-specific transporter subunit IIB	Similar to Bacillus stearothermophilus pts system%2Ccellobiose-specific IIb component celA SWALL:PTCB_BACST (SWALL:Q45399) (100 aa) fasta scores: E(): 7.6e-11%2C 44.79 id in 96 aa%2C and to Vibrio cholerae pts system%2Ccellobiose-specific iib component vc1281 SWALL:Q9KSH5 (EMBL:AE004207) (101 aa) fasta scores: E(): 4.9e-15%2C50.49 38d in 101 aa~possibly involved in cellobiose transport	gene	gene4060	http://www.ncbi.nlm.nih.gov/gene/?term=YE4103
YE4104	YE4104		YE4104	4491474	4492799	+	phosphotransferase protein	Similar to Lactococcus lactis pts system%2Clactose-specific IIbc component lacE SWALL:PTLB_LACLA (SWALL:P23531) (568 aa) fasta scores: E(): 1.9e-44%2C 34.65 id in 453 aa%2C and to Vibrio cholerae pts system%2Ccellobiose-specific iic component vc1282 SWALL:Q9KSH4 (EMBL:AE004207) (446 aa) fasta scores: E(): 5.9e-100%2C53.55 38d in 422 aa	gene	gene4061	http://www.ncbi.nlm.nih.gov/gene/?term=YE4104
YE4105	YE4105		YE4105	4492830	4493132	+	phosphotransferase protein	Similar to Yersinia pestis pts system cellobiose-specific IIa component celC or ypo2680 SWALL:Q8ZDA8 (EMBL:AJ414153) (115 aa) fasta scores: E(): 1.1e-20%2C 64.58 38d in 96 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 pts system cellobiose-specific IIa component celC or b1736 or z2766 or ecs2442 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 5.2e-20%2C 63.54 38d in 96 aa	gene	gene4062	http://www.ncbi.nlm.nih.gov/gene/?term=YE4105
YE4106	YE4106		YE4106	4493211	4494113	+	ROK family protein	Similar to Vibrio cholerae rok family protein vc0270 SWALL:Q9KV86 (EMBL:AE004115) (326 aa) fasta scores: E(): 5.8e-60%2C 52.04 38d in 294 aa~possibly not a transcriptional repressor since there is no HTH DNA-binding motif	gene	gene4063	http://www.ncbi.nlm.nih.gov/gene/?term=YE4106
YE4107	YE4107		YE4107	4494216	4495178	+	transcriptional regulator	Similar to Klebsiella pneumoniae ribose operon repressor rbsR SWALL:Q937H4 (EMBL:AJ292311) (94 aa) fasta scores: E(): 2.4e-20%2C 76.59 38d in 94 aa~contains PFAM motif from transcriptional repressors or periplasmic binding proteins~shares low similarity with transcriptional repressors and has no predicted signal sequence	gene	gene4064	http://www.ncbi.nlm.nih.gov/gene/?term=YE4107
YE4108	YE4108		YE4108	4495212	4495673	-	hypothetical protein	No significant hits in the databases	gene	gene4065	http://www.ncbi.nlm.nih.gov/gene/?term=YE4108
YE4109	YE4109		YE4109	4496817	4497812	-	hypothetical protein	No significant hits in the databases	gene	gene4066	http://www.ncbi.nlm.nih.gov/gene/?term=YE4109
YE4110	YE4110		YE4110	4497889	4498296	-	hypothetical protein		gene	gene4067	http://www.ncbi.nlm.nih.gov/gene/?term=YE4110
YE4111	YE4111		YE4111	4498512	4498793	-	hypothetical protein	Similar to Yersinia pestis KIM hypothetical y3270 SWALL:AAM86820 (EMBL:AE013928) (93 aa) fasta scores: E(): 3.3e-33%2C 81.72 38d in 93 aa	gene	gene4068	http://www.ncbi.nlm.nih.gov/gene/?term=YE4111
YE4112	YE4112		YE4112	4499404	4500513	+	hypothetical protein	Similar to Neisseria meningitidis hypothetical protein Nma1635 SWALL:Q9JTU0 (EMBL:AL162756) (375 aa) fasta scores: E(): 2e-82%2C 57.1 38d in 366 aa%2C and to Campylobacter jejuni mloA SWALL:AAM00840 (EMBL:AF486549) (356 aa) fasta scores: E(): 1.6e-44%2C 41.15 38d in 345 aa	gene	gene4069	http://www.ncbi.nlm.nih.gov/gene/?term=YE4112
YE4113	YE4113		YE4113	4500962	4501330	-			gene	gene4070	http://www.ncbi.nlm.nih.gov/gene/?term=YE4113
YE4114	YE4114		YE4114	4501692	4502372	-			gene	gene4071	http://www.ncbi.nlm.nih.gov/gene/?term=YE4114
YE4115	YE4115		YE4115	4502385	4502751	-			gene	gene4072	http://www.ncbi.nlm.nih.gov/gene/?term=YE4115
YE4117	YE4117		YE4117	4502800	4504014	-	phage integrase		gene	gene4073	http://www.ncbi.nlm.nih.gov/gene/?term=YE4117
YE4118	YE4118		YE4118	4504402	4505595	-	AraC family transcriptional regulator		gene	gene4075	http://www.ncbi.nlm.nih.gov/gene/?term=YE4118
YE4119	YE4119		YE4119	4505679	4506863	-	sugar transport system permease		gene	gene4076	http://www.ncbi.nlm.nih.gov/gene/?term=YE4119
YE4120	YE4120		YE4120	4506850	4508382	-	xylose transporter ATP-binding subunit	with XylFH is part of the high affinity xylose ABC transporter	gene	gene4077	http://www.ncbi.nlm.nih.gov/gene/?term=YE4120
YE4121	YE4121	xylF	xylF	4508475	4509470	-	D-xylose transporter subunit XylF	periplasmic substrate-binding component of the ATP-dependent xylose transport system%3B high affinity	gene	gene4078	http://www.ncbi.nlm.nih.gov/gene/?term=YE4121
YE4122	YE4122	xylA	xylA	4509849	4511168	+	xylose isomerase	catalyzes the interconversion of D-xylose to D-xylulose	gene	gene4079	http://www.ncbi.nlm.nih.gov/gene/?term=YE4122
YE4123	YE4123	xylB	xylB	4511318	4512880	+	xylulose kinase		gene	gene4080	http://www.ncbi.nlm.nih.gov/gene/?term=YE4123
YE4123A	YE4123A		YE4123A	4512828	4513595	-	fimbrial chaperone	Similar to Yersinia pestis putative fimbrial chaperone ypo4041 SWALL:Q8Z9Y8 (EMBL:AJ414160) (255 aa) fasta scores: E(): 3.7e-63%2C 62.99 38d in 254 aa%2C and to Escherichia coli chaperone protein PapD precursor papD SWALL:PAPD_ECOLI (SWALL:P15319) (239 aa) fasta scores: E(): 7.5e-35%2C 42.79 38d in 236 aa	gene	gene4081	http://www.ncbi.nlm.nih.gov/gene/?term=YE4123A
YE4124	YE4124		YE4124	4513765	4514859	+	isochorismatase family hydrolase	Similar to Agrobacterium tumefaciens hydrolase atu0265 or agr_c_456 SWALL:Q8UIM8 (EMBL:AE008998) (239 aa) fasta scores: E(): 4.5e-30%2C 49.16 38d in 179 aa~possible isochorismatase hydrolase	gene	gene4082	http://www.ncbi.nlm.nih.gov/gene/?term=YE4124
YE4125	YE4125		YE4125	4514862	4515788	+	transcriptional regulator	Similar to Agrobacterium tumefaciens transcriptional regulator%2C araC family atu0264 or agr_c_453 SWALL:Q8UIM9 (EMBL:AE008998) (327 aa) fasta scores: E(): 1.7e-44%2C 44.62 38d in 307 aa~Member of the AraC family	gene	gene4083	http://www.ncbi.nlm.nih.gov/gene/?term=YE4125
YE4126	YE4126		YE4126	4515781	4516773	-	hypothetical protein		gene	gene4084	http://www.ncbi.nlm.nih.gov/gene/?term=YE4126
YE4127	YE4127	cmr	cmr	4517024	4518253	+	multidrug translocase		gene	gene4085	http://www.ncbi.nlm.nih.gov/gene/?term=YE4127
YE4128	YE4128		YE4128	4518288	4519541	-	hypothetical protein	Similar to Rhizobium sp. hypothetical 45.3 kDa protein Y4dM SWALL:Y4DM_RHISN (SWALL:P55412) (409 aa) fasta scores: E(): 2.5e-38%2C 35.34 38d in 382 aa	gene	gene4086	http://www.ncbi.nlm.nih.gov/gene/?term=YE4128
YE4129	YE4129		YE4129	4519545	4519856	-	hypothetical protein	No significant hits in the databases	gene	gene4087	http://www.ncbi.nlm.nih.gov/gene/?term=YE4129
YE4130	YE4130	selB	selB	4520019	4521911	-	selenocysteinyl-tRNA-specific translation factor	Similar to Escherichia coli selenocysteine-specific elongation factor SelB or FdhA or b3590 SWALL:SELB_ECOLI (SWALL:P14081) (614 aa) fasta scores: E(): 5.3e-65%2C 63.57 id in 626 aa~Similar to Yersinia pestis selenocysteinyl-tRNA-specific translation factor SelB pseudogene	gene	gene4088	http://www.ncbi.nlm.nih.gov/gene/?term=YE4130
YE4131	YE4131	fdhA	fdhA	4521908	4523296	-	selenocysteine synthase	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis	gene	gene4089	http://www.ncbi.nlm.nih.gov/gene/?term=YE4131
YE4132	YE4132	fdhE	fdhE	4523328	4524257	-	formate dehydrogenase accessory protein FdhE	required for the formation of active formate dehydrogenase	gene	gene4090	http://www.ncbi.nlm.nih.gov/gene/?term=YE4132
YE4133	YE4133	fdoI	fdoI	4524257	4524907	-	formate dehydrogenase-O subunit gamma	cytochrome b556(FDO) component%3B heme containing	gene	gene4091	http://www.ncbi.nlm.nih.gov/gene/?term=YE4133
YE4134	YE4134	fdoH	fdoH	4524904	4525875	-	formate dehydrogenase-O iron-sulfur subunit		gene	gene4092	http://www.ncbi.nlm.nih.gov/gene/?term=YE4134
YE4135	YE4135	fdoG	fdoG	4525888	4528935	-			gene	gene4093	http://www.ncbi.nlm.nih.gov/gene/?term=YE4135
YE4137	YE4137	fdhD	fdhD	4529146	4529973	+	formate dehydrogenase accessory protein	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth	gene	gene4094	http://www.ncbi.nlm.nih.gov/gene/?term=YE4137
YE4138	YE4138	sodA	sodA	4530100	4530723	+	superoxide dismutase	SodA%3B manganese binding%3B only present under aerobic conditions%3B destroys free radicals	gene	gene4095	http://www.ncbi.nlm.nih.gov/gene/?term=YE4138
YE4139	YE4139	cheM	cheM	4531081	4533030	+	methyl-accepting chemotaxis protein II		gene	gene4096	http://www.ncbi.nlm.nih.gov/gene/?term=YE4139
YE4140	YE4140		YE4140	4533109	4533780	+	hypothetical protein	Similar to Salmonella typhi hypothetical protein Sty3815 sty3815 SWALL:Q8Z2W0 (EMBL:AL627279) (250 aa) fasta scores: E(): 3.4e-65%2C 69.5 38d in 223 aa	gene	gene4097	http://www.ncbi.nlm.nih.gov/gene/?term=YE4140
YE4141	YE4141		YE4141	4533934	4534353	-	hypothetical protein	Similar to Salmonella typhimurium McK protein SWALL:BAB91602 (EMBL:AP005147) (138 aa) fasta scores: E(): 1.3e-33%2C 65.94 38d in 138 aa	gene	gene4098	http://www.ncbi.nlm.nih.gov/gene/?term=YE4141
YE4142	YE4142		YE4142	4534350	4534577	-	hypothetical protein	may have alternative start site at 4534577	gene	gene4099	http://www.ncbi.nlm.nih.gov/gene/?term=YE4142
YE4143	YE4143		YE4143	4534879	4535235	-	hypothetical protein		gene	gene4100	http://www.ncbi.nlm.nih.gov/gene/?term=YE4143
YE4144	YE4144		YE4144	4535328	4536809	-	transcriptional regulator	Similar to Pseudomonas aeruginosa hypothetical protein Pa4132 SWALL:Q9HWP9 (EMBL:AE004829) (471 aa) fasta scores: E(): 2.7e-65%2C 39.87 38d in 474 aa%2C and to Ralstonia solanacearum putative transcription regulator protein rsc0599 or rs04846 SWALL:Q8Y1U0 (EMBL:AL646060) (504 aa) fasta scores: E(): 4.9e-64%2C 39.19 38d in 472 aa	gene	gene4101	http://www.ncbi.nlm.nih.gov/gene/?term=YE4144
YE4145	YE4145		YE4145	4536915	4537565	+	inner membrane protein	Similar to Rhizobium loti hypothetical protein Mll1430 SWALL:Q98KK8 (EMBL:AP002997) (198 aa) fasta scores: E(): 1e-23%2C 43.52 38d in 193 aa	gene	gene4102	http://www.ncbi.nlm.nih.gov/gene/?term=YE4145
YE4146	YE4146	mtlR	mtlR	4537562	4538116	-	mannitol repressor protein	Acts as a repressor of the mtlAD operon	gene	gene4103	http://www.ncbi.nlm.nih.gov/gene/?term=YE4146
YE4147	YE4147	mtlD	mtlD	4538231	4539394	-	mannitol-1-phosphate 5-dehydrogenase		gene	gene4104	http://www.ncbi.nlm.nih.gov/gene/?term=YE4147
YE4148	YE4148	mtlA	mtlA	4539627	4541549	-	PTS system mannitol-specific transporter subunit IIABC		gene	gene4105	http://www.ncbi.nlm.nih.gov/gene/?term=YE4148
YE4149	YE4149	yiaF	yiaF	4542569	4543288	-	hypothetical protein		gene	gene4106	http://www.ncbi.nlm.nih.gov/gene/?term=YE4149
YE4150	YE4150	glyS	glyS	4543536	4545605	-	glycyl-tRNA synthetase subunit beta	glycine--tRNA ligase beta chain%3B glyS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA	gene	gene4107	http://www.ncbi.nlm.nih.gov/gene/?term=YE4150
YE4151	YE4151	glyQ	glyQ	4545615	4546529	-	glycyl-tRNA synthetase subunit alpha	glycine--tRNA ligase alpha chain%3B GlyRS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA	gene	gene4108	http://www.ncbi.nlm.nih.gov/gene/?term=YE4151
YE4152	YE4152	tag	tag	4546786	4547358	+	DNA-3-methyladenine glycosylase		gene	gene4109	http://www.ncbi.nlm.nih.gov/gene/?term=YE4152
YE4153	YE4153		YE4153	4547355	4547810	+	hypothetical protein		gene	gene4110	http://www.ncbi.nlm.nih.gov/gene/?term=YE4153
YE4154	YE4154		YE4154	4547924	4549378	+	hypothetical protein	Similar to Yersinia pestis putative exported protein ypo2884 SWALL:Q8ZCT1 (EMBL:AJ414154) (806 aa) fasta scores: E(): 5.6e-49%2C 38.06 38d in 444 aa	gene	gene4111	http://www.ncbi.nlm.nih.gov/gene/?term=YE4154
YE4155	YE4155		YE4155	4549470	4551641	+	hypothetical protein	Similar to Yersinia pestis hypothetical protein Ypo0466 ypo0466 SWALL:Q8ZIM9 (EMBL:AJ414142) (815 aa) fasta scores: E(): 2.1e-67%2C 31.79 38d in 717 aa	gene	gene4112	http://www.ncbi.nlm.nih.gov/gene/?term=YE4155
YE4156	YE4156	yiaD	yiaD	4551867	4552526	+	outer membrane lipoprotein		gene	gene4113	http://www.ncbi.nlm.nih.gov/gene/?term=YE4156
YE4157	YE4157		YE4157	4552603	4553247	-	hypothetical protein		gene	gene4114	http://www.ncbi.nlm.nih.gov/gene/?term=YE4157
YE4158	YE4158		YE4158	4553427	4554887	+	transport protein	Similar to Ralstonia solanacearum putative transport transmembrane protein rsc2324 or rs01224 SWALL:Q8XWZ4 (EMBL:AL646069) (475 aa) fasta scores: E(): 2.8e-74%2C 46.55 38d in 464 aa%2C and to Mycobacterium tuberculosis hypothetical 47.7 kDa protein rv1634 or mtcy01b2.26 or mt1670 SWALL:O06151 (EMBL:Z95554) (471 aa) fasta scores: E(): 1.6e-47%2C 34.25 38d in 470 aa	gene	gene4115	http://www.ncbi.nlm.nih.gov/gene/?term=YE4158
YE4159	YE4159		YE4159	4555157	4556137	+	D-isomer specific 2-hydroxyacid dehydrogenase		gene	gene4116	http://www.ncbi.nlm.nih.gov/gene/?term=YE4159
YE4160	YE4160	malS	malS	4556286	4558352	+	periplasmic alpha-amylase	periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB%3B hydrolyzes alpha-(1%2C4) glycosidic linkages%3B contains internal disulfide bonds	gene	gene4117	http://www.ncbi.nlm.nih.gov/gene/?term=YE4160
YE4161	YE4161	avtA	avtA	4558487	4559740	+	valine--pyruvate transaminase	transaminase C%3B catalyzes transamination of alanine%2C valine%2C and 2-aminobutyrate with their respective 2-keto acids%3B also catalyzes terminal step in valine biosynthesis	gene	gene4118	http://www.ncbi.nlm.nih.gov/gene/?term=YE4161
YE4162	YE4162	yidE	yidE	4559886	4561544	-	hypothetical protein		gene	gene4119	http://www.ncbi.nlm.nih.gov/gene/?term=YE4162
YE4163	YE4163	hslS	hslS	4561809	4562282	-	heat shock chaperone IbpB	16 kDa heat shock protein B%3B associates with aggregated proteins%2C together with ibpA%2C to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress%3B ATP-independent	gene	gene4120	http://www.ncbi.nlm.nih.gov/gene/?term=YE4163
YE4164	YE4164	hslT	hslT	4562407	4562820	-	heat shock protein IbpA	with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress	gene	gene4121	http://www.ncbi.nlm.nih.gov/gene/?term=YE4164
YE4165	YE4165		YE4165	4563203	4563541	+	hypothetical protein		gene	gene4122	http://www.ncbi.nlm.nih.gov/gene/?term=YE4165
YE4166	YE4166		YE4166	4563543	4564844	-	hypothetical protein	Similar to Salmonella typhi putative ATP/GTP-binding protein sty3967 SWALL:Q8Z2M0 (EMBL:AL627280) (408 aa) fasta scores: E(): 4.9e-41%2C62.14 38d in 420 aa%2C and to Escherichia coli hypothetical protein YidR yidR or b3689 SWALL:YIDR_ECOLI (SWALL:P31455) (416 aa) fasta scores: E(): 5.4e-38%2C 62.65 38d in 407 aa	gene	gene4123	http://www.ncbi.nlm.nih.gov/gene/?term=YE4166
YE4167	YE4167		YE4167	4564986	4565945	+	hypothetical protein		gene	gene4124	http://www.ncbi.nlm.nih.gov/gene/?term=YE4167
YE4168	YE4168		YE4168	4565942	4566880	+	ornithine cyclodeaminase	catalyzes the formation of L-proline from L-ornithine	gene	gene4125	http://www.ncbi.nlm.nih.gov/gene/?term=YE4168
YE4169	YE4169		YE4169	4567039	4567848	-	sugar phosphatase	YidA%3B catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate)%2C mannose 1-phosphate and p-nitrophenyl phosphate%3B hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form%3B member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins	gene	gene4126	http://www.ncbi.nlm.nih.gov/gene/?term=YE4169
YE4170	YE4170	gyrB	gyrB	4568018	4570432	-	DNA gyrase subunit B	negatively supercoils closed circular double-stranded DNA	gene	gene4127	http://www.ncbi.nlm.nih.gov/gene/?term=YE4170
YE4171	YE4171	recF	recF	4570452	4571537	-	recombination protein F	Required for DNA replication%3B binds preferentially to single-stranded%2C linear DNA	gene	gene4128	http://www.ncbi.nlm.nih.gov/gene/?term=YE4171
YE4172	YE4172	dnaN	dnaN	4571700	4572800	-	DNA polymerase III subunit beta	binds the polymerase to DNA and acts as a sliding clamp	gene	gene4129	http://www.ncbi.nlm.nih.gov/gene/?term=YE4172
YE4173	YE4173	dnaA	dnaA	4572805	4574193	-	chromosomal replication initiation protein	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself.	gene	gene4130	http://www.ncbi.nlm.nih.gov/gene/?term=YE4173
YE4174	YE4174		YE4174	4574542	4574862	+	hypothetical protein	Possible CDS. No significant database hits	gene	gene4131	http://www.ncbi.nlm.nih.gov/gene/?term=YE4174
YE4175	YE4175	rpmH	rpmH	4574898	4575038	+	50S ribosomal protein L34	in Escherichia coli transcription of this gene is enhanced by polyamines	gene	gene4132	http://www.ncbi.nlm.nih.gov/gene/?term=YE4175
YE4176	YE4176	rnpA	rnpA	4575057	4575416	+	ribonuclease P	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus%3B this enzyme also cleaves other RNA substrates	gene	gene4133	http://www.ncbi.nlm.nih.gov/gene/?term=YE4176
YE4177	YE4177	yidC	yidC	4575640	4577286	+	inner membrane protein translocase component YidC	functions to insert inner membrane proteins into the IM in Escherichia coli%3B interacts with transmembrane segments%3B functions in both Sec-dependent and -independent membrane insertion%3B similar to Oxa1p in mitochondria	gene	gene4134	http://www.ncbi.nlm.nih.gov/gene/?term=YE4177
YE4178	YE4178	trmE	trmE	4577454	4578818	+	tRNA modification GTPase TrmE	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine%2C which is found in the wobble position of some tRNAs and affects ribosomal frameshifting%3B shows potassium-dependent dimerization and GTP hydrolysis%3B also involved in regulation of glutamate-dependent acid resistance and activation of gadE	gene	gene4135	http://www.ncbi.nlm.nih.gov/gene/?term=YE4178
YE4179	YE4179		YE4179	4578927	4580126	+	trans-2-enoyl-CoA reductase	enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity	gene	gene4136	http://www.ncbi.nlm.nih.gov/gene/?term=YE4179
YE4180	YE4180		YE4180	4580352	4581167	+	hypothetical protein	Similar to Neisseria meningitidis outer membrane lipoprotein Gna1946 gna1946 SWALL:Q9JPN5 (EMBL:AF226487) (287 aa) fasta scores: E(): 1.4e-31%2C 40.4 38d in 245 aa%2Cand to Salmonella typhimurium%2C and Salmonella enteritidis putative ABC-type transport system ATPase component/cell division protein sfba or stm0510 SWALL:Q9S4Z1 (EMBL:AE008719) (276 aa) fasta scores: E(): 1.5e-29%2C36.39 38d in 272 aa	gene	gene4137	http://www.ncbi.nlm.nih.gov/gene/?term=YE4180
YE4181	YE4181		YE4181	4581179	4582195	+	ABC transporter	Similar to Staphylococcus aureus hypothetical protein sav0462 or sa0420 SWALL:Q99WE1 (EMBL:AP003359) (341 aa) fasta scores: E(): 2.5e-59%2C 53.07 38d in 341 aa%2Cand to SWALL:ABC_ECOLI (SWALL:) (343 aa) fasta scores: E(): 2.9e-50%2C 45.85 38d in 338 aa	gene	gene4138	http://www.ncbi.nlm.nih.gov/gene/?term=YE4181
YE4182	YE4182		YE4182	4582192	4582857	+	ABC transporter permease	Similar to Staphylococcus aureus hypothetical protein Sav0463 or sa0421 SWALL:Q99WE0 (EMBL:AP003359) (219 aa) fasta scores: E(): 6e-48%2C 66.98 38d in 209 aa%2Cand to SWALL:YAEE_ECOLI (SWALL:) (217 aa) fasta scores: E(): 2.6e-30%2C 45.93 38d in 209 aa	gene	gene4139	http://www.ncbi.nlm.nih.gov/gene/?term=YE4182
YE4183	YE4183		YE4183	4583178	4585136	-	methyl-accepting chemotaxis receptor protein	Similar to Ralstonia solanacearum putative methyl-accepting chemotaxis transmembrane protein rsc0606 or rs06104 SWALL:Q8Y1T3 (EMBL:AL646060) (617 aa) fasta scores: E(): 1.4e-56%2C 44.28 38d in 499 aa%2C and to Salmonella typhimurium methyl-accepting chemotaxis protein II tar or chem or stm1919 SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 4e-48%2C 53.37 38d in 326 aa	gene	gene4140	http://www.ncbi.nlm.nih.gov/gene/?term=YE4183
YE4184	YE4184	ssuE	ssuE	4585342	4585914	+	NAD(P)H-dependent FMN reductase		gene	gene4141	http://www.ncbi.nlm.nih.gov/gene/?term=YE4184
YE4185	YE4185		YE4185	4586022	4587371	+	two-component sensor kinase	Similar to Rhizobium loti two-component c4-dicarboxylate transport system%2C sensor protein mlr7238 SWALL:Q986R7 (EMBL:AP003011) (601 aa) fasta scores: E(): 4.4e-21%2C 34.82 38d in 224 aa%2C and to Rhizobium meliloti sensor protein fixl fixl or ra0670 or sma1229 SWALL:FIXL_RHIME (SWALL:P10955) (505 aa) fasta scores: E(): 4.8e-17%2C 31.48 38d in 235 aa	gene	gene4142	http://www.ncbi.nlm.nih.gov/gene/?term=YE4185
YE4186	YE4186		YE4186	4587397	4587948	+	two-component response regulator	Similar to Agrobacterium tumefaciens two component response regulator nwsb or atu1116 or agr_c_2066 SWALL:Q8UGC2 (EMBL:AE009075) (202 aa) fasta scores: E(): 2.7e-22%2C 42.1 38d in 171 aa%2C and to Bradyrhizobium japonicum transcriptional regulatory protein FixJ fixJ SWALL:FIXJ_BRAJA (SWALL:P23221) (205 aa) fasta scores: E(): 2.7e-19%2C 37.14 38d in 175 aa~Potential regulatory partner to YE4185 sensor kinase	gene	gene4143	http://www.ncbi.nlm.nih.gov/gene/?term=YE4186
YE4187	YE4187		YE4187	4588307	4588798	+	hypothetical protein	Similar to Agrobacterium tumefaciens hypothetical protein atu1117 or agr_c_2067 SWALL:Q8UGC1 (EMBL:AE009075) (160 aa) fasta scores: E(): 2.7e-15%2C 40.12 38d in 162 aa	gene	gene4144	http://www.ncbi.nlm.nih.gov/gene/?term=YE4187
YE4188	YE4188	yieG	yieG	4588884	4590212	-	xanthine/uracil permease family protein		gene	gene4145	http://www.ncbi.nlm.nih.gov/gene/?term=YE4188
YE4189	YE4189		YE4189	4590482	4591150	+	6-phosphogluconate phosphatase	YieH%3B catalyzes the dephosphorylation of phosphoenolpyruvate%2C AMP and p-nitrophenyl phosphate%3B purine and pyrimidine nucleotides are secondary substrates%3B member of the haloacid dehalogenase-like hydrolases superfamily	gene	gene4146	http://www.ncbi.nlm.nih.gov/gene/?term=YE4189
YE4190	YE4190		YE4190	4591147	4591902	-	amino acid transport system permease		gene	gene4147	http://www.ncbi.nlm.nih.gov/gene/?term=YE4190
YE4191	YE4191		YE4191	4591904	4592641	-	ABC transporter permease		gene	gene4148	http://www.ncbi.nlm.nih.gov/gene/?term=YE4191
YE4193	YE4193		YE4193	4592871	4593725	-	substrate-binding protein		gene	gene4149	http://www.ncbi.nlm.nih.gov/gene/?term=YE4193
YE4194	YE4194		YE4194	4594015	4595205	+	tyrosine phosphatase	No significant database hits to the N-terminal 120 amino acids. Similar to Salmonella typhimurium protein tyrosine phosphatase SptP or stm2878 SWALL:P74873 (EMBL:U63293) (543 aa) fasta scores: E(): 5.1e-17%2C 36.31 id in 201 aa%2C and to Yersinia enterocolitica secreted effector protein-tyrosine phosphatase YopH or yop51 SWALL:YOPH_YEREN (SWALL:P15273) (468 aa) fasta scores: E(): 1.4e-15%2C 34.3 38d in 274 aa	gene	gene4150	http://www.ncbi.nlm.nih.gov/gene/?term=YE4194
YE4195	YE4195		YE4195	4595275	4595613	+	hypothetical protein	No significant database hits	gene	gene4151	http://www.ncbi.nlm.nih.gov/gene/?term=YE4195
YE4196	YE4196	nmpA	nmpA	4595724	4596446	-	transcriptional regulator PhoU	regulates several genes involved in high affinity phosphate uptake%3B under conditions of high phosphate concentrations downregulates the PHO regulon	gene	gene4152	http://www.ncbi.nlm.nih.gov/gene/?term=YE4196
YE4198	YE4198	pstB	pstB	4596616	4597392	-	phosphate transporter ATP-binding protein	ATP-binding protein%3B PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation	gene	gene4153	http://www.ncbi.nlm.nih.gov/gene/?term=YE4198
YE4199	YE4199	pstA	pstA	4597494	4598381	-	phosphate transporter permease subunit PtsA	Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions	gene	gene4154	http://www.ncbi.nlm.nih.gov/gene/?term=YE4199
YE4200	YE4200	pstC	pstC	4598383	4599339	-	phosphate transporter permease subunit PstC	part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions	gene	gene4155	http://www.ncbi.nlm.nih.gov/gene/?term=YE4200
YE4201	YE4201	phoS	phoS	4599524	4600564	-	phosphate ABC transporter substrate-binding protein		gene	gene4156	http://www.ncbi.nlm.nih.gov/gene/?term=YE4201
YE4202	YE4202		YE4202	4600837	4601199	+	hypothetical protein	No significant database hits	gene	gene4157	http://www.ncbi.nlm.nih.gov/gene/?term=YE4202
YE4203	YE4203	glmS	glmS	4601322	4603151	-	glucosamine--fructose-6-phosphate aminotransferase	Catalyzes the first step in hexosamine metabolism%2C converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source	gene	gene4158	http://www.ncbi.nlm.nih.gov/gene/?term=YE4203
YE4204	YE4204	glmU	glmU	4603358	4604728	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	forms a homotrimer%3B catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc%3B function in cell wall synthesis	gene	gene4159	http://www.ncbi.nlm.nih.gov/gene/?term=YE4204
YE4205	YE4205	atpC	atpC	4605243	4605665	-	F0F1 ATP synthase subunit epsilon	part of catalytic core of ATP synthase%3B alpha(3)beta(3)gamma(1)delta(1)epsilon(1)%3B involved in producing ATP from ADP in the presence of the proton motive force across the membrane	gene	gene4160	http://www.ncbi.nlm.nih.gov/gene/?term=YE4205
YE4206	YE4206	atpD	atpD	4605687	4607069	-	F0F1 ATP synthase subunit beta	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit	gene	gene4161	http://www.ncbi.nlm.nih.gov/gene/?term=YE4206
YE4207	YE4207	atpG	atpG	4607226	4608089	-	F0F1 ATP synthase subunit gamma	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit	gene	gene4162	http://www.ncbi.nlm.nih.gov/gene/?term=YE4207
YE4208	YE4208	atpA	atpA	4608151	4609692	-	F0F1 ATP synthase subunit alpha	produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit	gene	gene4163	http://www.ncbi.nlm.nih.gov/gene/?term=YE4208
YE4209	YE4209	atpH	atpH	4609707	4610240	-	F0F1 ATP synthase subunit delta	Produces ATP from ADP in the presence of a proton gradient across the membrane%3B the delta subunit is part of the catalytic core of the ATP synthase complex	gene	gene4164	http://www.ncbi.nlm.nih.gov/gene/?term=YE4209
YE4210	YE4210	atpF	atpF	4610255	4610725	-	F0F1 ATP synthase subunit B	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.	gene	gene4165	http://www.ncbi.nlm.nih.gov/gene/?term=YE4210
YE4211	YE4211	atpE	atpE	4610786	4611025	-	F0F1 ATP synthase subunit C	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0	gene	gene4166	http://www.ncbi.nlm.nih.gov/gene/?term=YE4211
YE4212	YE4212	atpB	atpB	4611200	4612024	-	F0F1 ATP synthase subunit A	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0	gene	gene4167	http://www.ncbi.nlm.nih.gov/gene/?term=YE4212
YE4213	YE4213	atpI	atpI	4612080	4612463	-	F0F1 ATP synthase subunit I	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation	gene	gene4168	http://www.ncbi.nlm.nih.gov/gene/?term=YE4213
YE4214	YE4214	gidB	gidB	4613131	4613751	-	16S rRNA methyltransferase GidB	glucose-inhibited division protein B%3B SAM-dependent methyltransferase%3B methylates the N7 position of guanosine in position 527 of 16S rRNA	gene	gene4169	http://www.ncbi.nlm.nih.gov/gene/?term=YE4214
YE4215	YE4215	gidA	gidA	4613899	4615788	-	tRNA uridine 5-carboxymethylaminomethyl modification protein GidA	GidA%3B glucose-inhibited cell division protein A%3B involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs	gene	gene4170	http://www.ncbi.nlm.nih.gov/gene/?term=YE4215
YEP0001	YEP0001		YEP0001	628	1287	+	putative transposase	Similar to several putative transposases including: Agrobacterium tumefaciens IS3 family transposase SWALL:Q8UDL7 (EMBL:AE009161) (512 aa) fasta scores: E(): 3.8e-24%2C 37.56 38d in 197 aa and to Escherichia coli%2C and Shigella flexneri possible transposase of IS1353 YahA SWALL:Q9WTH9 (EMBL:AP000342) (514 aa) fasta scores: E(): 9.4e-21%2C 36.5 38d in 200 aa	gene	gene4171	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0001
YEP0002	YEP0002	trp1400A	trp1400A	1284	1571	-	IS1400 transposase A	Similar to Yersinia enterocolitica is1400 transposase a trp1400A SWALL:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 4.6e-31%2C 96.84 38d in 95 aa%2C and to Escherichia coli O6 transposase c2472 SWALL:AAN80931 (EMBL:AE016762) (88 aa) fasta scores: E(): 5.6e-28%2C 93.18 id in 88 aa	gene	gene4172	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0002
YEP0003	YEP0003		YEP0003	1674	2108	+	putative transposase	Highly similar to Shigella flexneri 2a IS1353 putative transposase-like protein cp0118 SWALL:Q8VSI3 (EMBL:AF386526) (140 aa) fasta scores: E(): 2.3e-52%2C84.17 38d in 139 aa. Also similar to the C-termini of many other transposases including: Agrobacterium tumefaciens IS3 family transposase SWALL:Q8UDL7 (EMBL:AE009161) (512 aa) fasta scores: E(): 2.9e-43%2C 69.93 38d in 143 aa and Klebsiella pneumoniae IS1353 putative transposase SWALL:AAM89407 (EMBL:AY123253) (514 aa) fasta scores: E(): 2.9e-39%2C 63.38 38d in 142 aa	gene	gene4173	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0003
YEP0004	YEP0004	yopQ	yopQ	2291	2839	-	virulence plasmid protein	Previously sequenced as Yersinia enterocolitica YopQ protein precursor or Yop20 SWALL:YOPQ_YEREN (SWALL:P27474) (182 aa) fasta scores: E(): 2.4e-72%2C 99.45 id in 182 aa%2C and to Yersinia enterocolitica YopQ SWALL:Q93KV1 (EMBL:AF336309) (182 aa) fasta scores: E(): 1.5e-72%2C 100 38d in 182 aa	gene	gene4174	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0004
YEP0005	YEP0005	yopT	yopT	3352	4320	+	plasmid type III secretion system effector protein	Previously sequenced: Yersinia enterocolitica plasmid type III secretion system effector protein YopT or ypcd1.20 SWALL:Q93KV0 (EMBL:AF336309) (322 aa) fasta scores: E(): 8.1e-132%2C 100 38d in 322 aa	gene	gene4175	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0005
YEP0006	YEP0006	sycT	sycT	4320	4712	+	chaperone of YopT	Previously sequenced as Yersinia enterocolitica YopT chaperone SycT SWALL:Q93KU9 (EMBL:AF336309) (130 aa) fasta scores: E(): 5.9e-53%2C 100 38d in 130 aa and to Yersinia pestis yopt chaperone syct or ypcd1.21 SWALL:Q9ZGW6 (EMBL:AF074612) (132 aa) fasta scores: E(): 1.3e-51%2C 97.72 38d in 132 aa	gene	gene4176	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0006
YEP0007	YEP0007		YEP0007	6065	6202	-	hypothetical protein	Similar to the C-terminus of Yersinia pestis hypothetical protein Y0062 or Ypcd1.23 SWALL:Q9ZGW8 (EMBL:AF074612) (139 aa) fasta scores: E(): 1.6e-18%2C95.55 38d in 45 aa%2C and to Salmonella typhimurium lytic enzyme Stm1868A SWALL:Q8ZNX9 (EMBL:AE008783) (55 aa) fasta scores: E(): 0.00018%2C 41.86 38d in 43 aa	gene	gene4177	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0007
YEP0008	YEP0008		YEP0008	6479	6939	-			gene	gene4178	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0008
YEP0009	YEP0009		YEP0009	7099	7681	+			gene	gene4179	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0009
YEP0010	YEP0010	yopM	yopM	7724	8827	-	yop type III secretion system effector protein	Previously sequenced:Yersinia enterocolitica virulence plasmid type III secretion system effector protein YopM SWALL:Q93KU8 (EMBL:AF336309) (367 aa) fasta scores: E(): 3.9e-133%2C 100 38d in 367 aa and to Yersinia pestis outer membrane protein YopM or Yop48 or Ypcd1.26c or y0059 SWALL:YOPM_YERPE (SWALL:P17778) (409 aa) fasta scores: E(): 1.9e-78%2C 81.66 38d in 409 aa	gene	gene4180	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0010
YEP0011	YEP0011		YEP0011	8950	9168	+	hypothetical protein	Previously sequenced:Yersinia enterocolitica hypothetical 8.0 kDa protein orf91B SWALL:Q93KU7 (EMBL:AF336309) (72 aa) fasta scores: E(): 2.1e-29%2C 100 id in 72 aa. No other significant database hits	gene	gene4181	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0011
YEP0012	YEP0012	yopD	yopD	9654	10574	-	translocator protein	Previously sequenced: Yersinia enterocolitica YopD translocator protein SWALL:YOPD_YEREN (SWALL:P37132) (306 aa) fasta scores: E(): 4e-96%2C 98.36 38d in 306 aa%2C and to Yersinia pestis YopD homolog or Ypcd1.28C SWALL:O68699 (EMBL:AF053946) (306 aa) fasta scores: E(): 2.8e-95%2C97.71 38d in 306 aa%2C and to Yersinia pseudotuberculosis YopD protein SWALL:YOPD_YERPS (SWALL:Q06131) (306 aa) fasta scores: E(): 5.3e-95%2C 97.38 38d in 306 aa%2C and to Pseudomonas aeruginosa translocator protein PopD popd or pa1709 SWALL:Q9I323 (EMBL:AE004597) (295 aa) fasta scores: E(): 2.2e-31%2C 40.76 38d in 287 aa	gene	gene4182	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0012
YEP0013	YEP0013	yopB	yopB	10593	11798	-	virulence plasmid YopB transmembrane effector protein	Previously sequenced: Yersinia enterocolitica virulence plasmid YopB transmembrane protein SWALL:YOPB_YEREN (SWALL:P37131) (401 aa) fasta scores: E(): 2.2e-121%2C 98.75 38d in 401 aa%2C and to Yersinia pseudotuberculosis YopB protein yopB SWALL:YOPB_YERPS (SWALL:Q06114) (401 aa) fasta scores: E(): 1e-119%2C 96.5 id in 401 aa%2C and to Yersinia pestis yopb homolog yopb or ypcd1.29C SWALL:O68698 (EMBL:AF053946) (401 aa) fasta scores: E(): 1.9e-119%2C 96.25 38d in 401 aa	gene	gene4183	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0013
YEP0014	YEP0014	sycD	sycD	11776	12282	-	yopB/D chaperone/regulatory protein	Previously sequenced: Yersinia enterocolitica yopB/D chaperone/regulatory protein SycD SWALL:AAK69212 (EMBL:AF336309) (168 aa) fasta scores: E(): 4.8e-67%2C 100 id in 168 aa. Also highly similar to Yersinia pseudotuberculosis low calcium response locus protein H LcrH SWALL:LCRH_YERPS (SWALL:P23995) (168 aa) fasta scores: E(): 4.8e-67%2C 100 38d in 168 aa%2C and to Yersinia pestis low calcium response locus protein H LcrH or Ypcd1.30c or y0051 SWALL:LCRH_YERPE (SWALL:P21207) (168 aa) fasta scores: E(): 2.6e-66%2C 99.4 38d in 168 aa	gene	gene4184	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0014
YEP0015	YEP0015	lcrV	lcrV	12285	13259	-	virulence-associated V antigen	Previously sequenced: Yersinia enterocolitica virulence-associated V antigen LcrV SWALL:Q93KU4 (EMBL:AF336309) (324 aa) fasta scores: E(): 1.9e-111%2C 100 id in 324 aa. Also highly similar to Yersinia pseudotuberculosis virulence-associated V antigen LcrV SWALL:LCRV_YERPS (SWALL:P23994) (326 aa) fasta scores: E(): 2.5e-107%2C 96.28 38d in 323 aa and to Yersinia pestis virulence-associated V antigen LcrV or Ypcd1.31c or y0050 SWALL:LCRV_YERPE (SWALL:P21206) (326 aa) fasta scores: E(): 4.7e-106%2C 95.66 38d in 323 aa	gene	gene4185	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0015
YEP0016	YEP0016	lcrG	lcrG	13261	13548	-	low calcium response locus protein g	Previously sequenced: Yersinia enterocolitica LcrG SWALL:Q93KU3 (EMBL:AF336309) (95 aa) fasta scores: E(): 5.2e-32%2C 100 38d in 95 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis low calcium response locus protein G LcrG or Ypcd1.32c or Y0049 SWALL:LCRG_YERPE (SWALL:P19394) (95 aa) fasta scores: E(): 1.8e-31%2C 98.94 38d in 95 aa	gene	gene4186	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0016
YEP0017	YEP0017	lcrR	lcrR	13590	14030	-	low calcium response locus protein R	Previously sequenced: Yersinia enterocolitica low calcium response locus protein R which may play an important role in its regulation%2C LcrR SWALL:LCRR_YEREN (SWALL:O68549) (146 aa) fasta scores: E(): 4e-62%2C 99.31 id in 146 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis low calcium response locus protein R LcrR or Ypcd1.33c or Y0048 SWALL:LCRR_YERPE (SWALL:P19393) (146 aa) fasta scores: E(): 1.3e-61%2C 98.63 id in 146 aa	gene	gene4187	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0017
YEP0018	YEP0018	lcrD	lcrD	14027	16141	-	low calcium response locus membrane protein d	Previously sequenced: Yersinia enterocolitica low calcium response locus integral membrane protein D LcrD SWALL:LCRD_YEREN (SWALL:P21210) (704 aa) fasta scores: E(): 0%2C 99.57 38d in 704 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis low calcium response locus protein D LcrD or Ypcd1.34c or Y0047 SWALL:LCRD_YERPE (SWALL:P31487) (704 aa) fasta scores: E(): 0%2C 99 38d in 704 aa	gene	gene4188	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0018
YEP0019	YEP0019	yscY	yscY	16128	16472	-	hypothetical protein	Previously sequenced: Yersinia enterocolitica YscY SWALL:Q93KU0 (EMBL:AF336309) (114 aa) fasta scores: E(): 9.5e-49%2C 100 38d in 114 aa. Also highly similar to Yersinia pestis hypothetical protein Ypcd1.35c or Y0046 SWALL:Y6D5_YERPE (SWALL:P21209) (114 aa) fasta scores: E(): 7.9e-48%2C 99.11 38d in 113 aa	gene	gene4189	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0019
YEP0020	YEP0020	yscX	yscX	16469	16837	-	hypothetical protein	Previously sequenced: Yersinia enterocolitica hypothetical protein SWALL:YLC3_YEREN (SWALL:P21208) (122 aa) fasta scores: E(): 1.8e-46%2C 99.18 38d in 122 aa. Also highly similar to Y. ersinia pestis and Y. enterocolitica hypothetical 13.8 kDa protein Y0045 or Ypcd1.36c or YscX SWALL:O68696 (EMBL:AF053946) (122 aa) fasta scores: E(): 9.9e-47%2C 100 38d in 122 aa	gene	gene4190	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0020
YEP0021	YEP0021	sycN	sycN	16834	17205	-	YopN chaperone SycN	Previously sequenced: Yersinia enterocolitica YopN chaperone SycN SWALL:Q93KT9 (EMBL:AF336309) (123 aa) fasta scores: E(): 1.6e-48%2C 100 38d in 123 aa. Also highly similar to Yersinia pestis and Yersinia pseudotuberculosis hypothetical protein Ypcd1.37c or Y0044 SWALL:Y6D7_YERPE (SWALL:P16162) (123 aa) fasta scores: E(): 3.6e-48%2C 99.18 id in 123 aa	gene	gene4191	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0021
YEP0022	YEP0022	tyeA	tyeA	17192	17470	-	type III secretion system protein	Previously sequenced: Yersinia enterocolitica TyeA SWALL:AAK69221 (EMBL:AF336309) (92 aa) fasta scores: E(): 9.8e-35%2C 100 38d in 92 aa. Also highly similar to Yersinia pestis%2C Yersinia enterocolitica%2C and Yersinia pseudotuberculosis protein TyeA or Ypcd1.38c or Y0043 SWALL:TYEA_YERPE (SWALL:P16161) (92 aa) fasta scores: E(): 9.8e-35%2C 100 38d in 92 aa	gene	gene4192	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0022
YEP0023	YEP0023	yopN	yopN	17451	18332	-	type III secretion outer membrane protein	Previously sequenced: Yersinia enterocolitica plasmid type III secretion system outer membrane protein YopN or LcrE SWALL:YOPN_YEREN (SWALL:P16945) (292 aa) fasta scores: E(): 7.8e-96%2C 95.54 38d in 292 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis outer membrane protein YopN or LcrE or Ypcd1.39c or y0042 SWALL:YOPN_YERPE (SWALL:P16160) (292 aa) fasta scores: E(): 6.3e-99%2C 97.6 38d in 292 aa	gene	gene4193	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0023
YEP0024	YEP0024	yscN	yscN	18530	19849	+	type III secretion system ATPase	Previously sequenced: Yersinia enterocolitica probable ATP synthase YscN SWALL:YSCN_YEREN (SWALL:P40290) (439 aa) fasta scores: E(): 8e-158%2C 99.76 38d in 427 aa. Also highly similar to Yersinia pestis%2C and Yersinia enterocolitica Yops secretion ATPase YscN or Ypcd1.40 SWALL:O68695 (EMBL:AF053946) (439 aa) fasta scores: E(): 4e-158%2C 100 38d in 427 aa%2C and to Yersinia pseudotuberculosis probable ATP synthase YscN SWALL:YSCN_YERPS (SWALL:P40291) (439 aa) fasta scores: E(): 1.2e-156%2C 99.29 38d in 427 aa%2C and to Pseudomonas aeruginosa ATP synthase in type III secretion system Pa1697 SWALL:Q9I330 (EMBL:AE004596) (440 aa) fasta scores: E(): 1.3e-130%2C 84.89 38d in 417 aa	gene	gene4194	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0024
YEP0025	YEP0025	yscO	yscO	19846	20310	+	type III secretion system translocation protein	Similar to Yersinia enterocolitica type III secretion system translocation protein YscO SWALL:Q93KT7 (EMBL:AF336309) (154 aa) fasta scores: E(): 9.7e-51%2C 100 id in 154 aa%2C and to Yersinia pseudotuberculosis Yop proteins translocation protein O YscO SWALL:YSCO_YERPS (SWALL:P40294) (154 aa) fasta scores: E(): 3.1e-49%2C 96.75 id in 154 aa	gene	gene4195	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0025
YEP0026	YEP0026	yscP	yscP	20310	21671	+	putative type III secretion protein	Previously sequenced: Yersinia enterocolitica YscP SWALL:Q93KT6 (EMBL:AF336309) (453 aa) fasta scores: E(): 1.8e-171%2C 100 38d in 453 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis Yop proteins translocation protein P YscP or Ypcd1.42 or Y0039 SWALL:YSCP_YERPE (SWALL:P40295) (455 aa) fasta scores: E(): 2.2e-159%2C 93.84 38d in 455 aa	gene	gene4196	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0026
YEP0027	YEP0027	yscQ	yscQ	21668	22591	+	type III secretion system protein	Previously sequenced: Yersinia enterocolitica YscQ SWALL:Q9ZA78 (EMBL:AF102990) (307 aa) fasta scores: E(): 2.9e-123%2C 100 38d in 307 aa. Also highly similar to Yersinia pseudotuberculosis Yop proteins translocation protein Q YscQ SWALL:YSCQ_YERPS (SWALL:P40296) (307 aa) fasta scores: E(): 2.5e-121%2C 98.69 38d in 307 aa%2C and to Yersinia pestis Yop proteins translocation protein Q YscQ or ypcd1.43 or y0038 SWALL:YSCQ_YERPE (SWALL:P42713) (307 aa) fasta scores: E(): 9.4e-121%2C 98.04 38d in 307 aa	gene	gene4197	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0027
YEP0028	YEP0028	yscR	yscR	22588	23241	+	type III secretion system protein	part of a set of proteins involved in the infection of eukaryotic cells%3B in plant pathogens involved in the hypersensitivity response	gene	gene4198	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0028
YEP0029	YEP0029	yscS	yscS	23243	23509	+	putative type III secretion protein	Previously sequenced: Yersinia enterocolitica YscS SWALL:AAD16829 (EMBL:AF102990) (88 aa) fasta scores: E(): 1.5e-30%2C 100 38d in 88 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein S YscS or ypcd1.45 or y0036 SWALL:YSCS_YERPE (SWALL:P40298) (88 aa) fasta scores: E(): 1.5e-30%2C 100 38d in 88 aa%2C and to Pseudomonas aeruginosa probable translocation protein in type III secretion Pa1692 SWALL:Q9I335 (EMBL:AE004596) (88 aa) fasta scores: E(): 3.6e-23%2C 75 38d in 88 aa	gene	gene4199	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0029
YEP0030	YEP0030	yscT	yscT	23506	24291	+	putative type III secretion protein	Previously sequenced: Yersinia enterocolitica YscT SWALL:Q93KT5 (EMBL:AF336309) (261 aa) fasta scores: E(): 3e-95%2C 100 38d in 261 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein T YscT or Ypcd1.46 or Y0035 SWALL:YSCT_YERPE (SWALL:P40299) (261 aa) fasta scores: E(): 5.2e-94%2C 98.85 38d in 261 aa%2C and to Pseudomonas aeruginosa translocation protein in type III secretion PscT or Pa1691 SWALL:Q9I336 (EMBL:AE004596) (262 aa) fasta scores: E(): 1.9e-65%2C 68.34 38d in 259 aa	gene	gene4200	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0030
YEP0031	YEP0031	yscU	yscU	24291	25355	+	putative type III secretion protein	Previously sequenced: Yersinia enterocolitica YscU SWALL:Q93KT4 (EMBL:AF336309) (354 aa) fasta scores: E(): 2.5e-130%2C 100 38d in 354 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein U YscU or Ypcd1.47 or Y0034 SWALL:YSCU_YERPE (SWALL:P40300) (354 aa) fasta scores: E(): 3.6e-129%2C 99.15 38d in 354 aa%2C and to Pseudomonas aeruginosa translocation protein in type iii secretion pscu or pa1690 SWALL:Q9I337 (EMBL:AE004596) (349 aa) fasta scores: E(): 6.3e-91%2C 66.85 38d in 347 aa	gene	gene4201	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0031
YEP0033	YEP0033	virG	virG	25931	26326	+	putative type III secretion effector targeting lipoprotein	Previously sequenced: Yersinia enterocolitica lipoprotein VirG SWALL:Q56851 (EMBL:AF102990) (131 aa) fasta scores: E(): 3e-51%2C 100 38d in 131 aa. Also highly similar to Yersinia pestis pre-lipoprotein VirG or YscW or Ypcd1.48 SWALL:O68694 (EMBL:AF053946) (131 aa) fasta scores: E(): 3.2e-49%2C 96.18 38d in 131 aa%2C and to Pseudomonas aeruginosa exoenzyme S synthesis protein B ExsB or Pa1712 SWALL:EXSB_PSEAE (SWALL:P26994) (137 aa) fasta scores: E(): 3.1e-06%2C 29.54 38d in 132 aa	gene	gene4202	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0033
YEP0035	YEP0035	virF	virF	26450	27265	+	virulence regulon transcriptional activator	Previously sequenced: Yersinia enterocolitica virulence regulon transcriptional activator VirF SWALL:VIRF_YEREN (SWALL:P13225) (271 aa) fasta scores: E(): 9.7e-110%2C 98.52 38d in 271 aa. Also highly similar to Yersinia pestis thermoregulatory protein LcrF or ypcd1.49 or y0032 SWALL:LCRF_YERPE (SWALL:P28808) (271 aa) fasta scores: E(): 1.3e-108%2C 97.78 38d in 271 aa and to Pseudomonas aeruginosa exoenzyme S synthesis regulatory protein ExsA or pa1713 SWALL:EXSA_PSEAE (SWALL:P26993) (278 aa) fasta scores: E(): 1.3e-57%2C 57.41 38d in 263 aa	gene	gene4203	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0035
YEP0036	YEP0036	yscA	yscA	27345	27443	+	hydrophobic protein	doubtful CDS. Previously sequenced: Yersinia enterocolitica yop proteins translocation protein A YscA SWALL:YSCA_YEREN (SWALL:Q01242) (32 aa) fasta scores: E(): 9.5e-14%2C 100 38d in 32 aa	gene	gene4204	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0036
YEP0037	YEP0037	yscB	yscB	27668	28081	+	hypothetical protein	Previously sequenced: Yersinia enterocolitica YscB SWALL:Q93KT2 (EMBL:AF336309) (137 aa) fasta scores: E(): 1.5e-52%2C 100 38d in 137 aa. Also highly similar to Yersinia pestis KIM5 YscB or Ypcd1.51 SWALL:Q56973 (EMBL:M83225) (137 aa) fasta scores: E(): 1.7e-51%2C 97.81 id in 137 aa%2C and to Pseudomonas aeruginosa PscB SWALL:P95430 (EMBL:U56077) (140 aa) fasta scores: E(): 8.4e-16%2C 43.41 38d in 129 aa	gene	gene4205	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0037
YEP0038	YEP0038	yscC	yscC	28087	29910	+	putative type III secretion protein	Previously sequenced: Yersinia enterocolitica yop proteins translocation protein C precursor YscC SWALL:YSCC_YEREN (SWALL:Q01244) (607 aa) fasta scores: E(): 0%2C 99.17 38d in 607 aa. Also highly similar to Yersinia pestis KIM5 or Yscc or Ypcd1.52 SWALL:Q56974 (EMBL:M83225) (607 aa) fasta scores: E(): 0%2C 98.35 38d in 607 aa%2C and to Pseudomonas aeruginosa type III secretion protein PscC or pa1716 SWALL:Q9I319 (EMBL:AE004598) (600 aa) fasta scores: E(): 2.2e-146%2C 62.74 38d in 604 aa	gene	gene4206	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0038
YEP0039	YEP0039	yscD	yscD	29907	31163	+	putative type III secretion protein	Previously sequenced: Yersinia enterocolitica yop proteins translocation protein D YscD SWALL:YSCD_YEREN (SWALL:Q01245) (418 aa) fasta scores: E(): 5.1e-158%2C99.04 38d in 418 aa. Also highly similar to Yersinia pestis kim5 YscD or Ypcd1.53 SWALL:Q56975 (EMBL:M83225) (419 aa) fasta scores: E(): 1.1e-156%2C 98.56 38d in 419 aa and to Pseudomonas aeruginosa PscD SWALL:P95432 (EMBL:U56077) (432 aa) fasta scores: E(): 1.5e-59%2C 44.41 id in 421 aa	gene	gene4207	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0039
YEP0040	YEP0040	yscE	yscE	31160	31363	+	putative type III secretion protein	Previously sequenced: Yersinia enterocolitica putative yop proteins translocation protein E YscE SWALL:YSCE_YEREN (SWALL:Q01246) (66 aa) fasta scores: E(): 3.3e-23%2C 96.97 38d in 66 aa. Also highly similar to Yersinia pestis yop proteins translocation protein E homolog YscE or Ypcd1.54 SWALL:O68692 (EMBL:AF053946) (66 aa) fasta scores: E(): 7.7e-23%2C 93.93 38d in 66 aa%2C and to Pseudomonas aeruginosa PscE SWALL:P95433 (EMBL:U56077) (67 aa) fasta scores: E(): 0.091%2C 27.27 38d in 66 aa	gene	gene4208	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0040
YEP0041	YEP0041	yscF	yscF	31360	31623	+	putative type III secretion protein	Previously sequenced: Yersinia enterocolitica yop proteins translocation protein F YscF SWALL:YSCF_YEREN (SWALL:Q01247) (87 aa) fasta scores: E(): 1.1e-27%2C 94.25 id in 87 aa. Also highly similar to Yersinia pestis yop proteins translocation protein F homolog YscF or ypcd1.55 SWALL:O68691 (EMBL:AF053946) (87 aa) fasta scores: E(): 2.4e-27%2C 93.1 38d in 87 aa%2C and to Pseudomonas aeruginosa PscF or pa1719 SWALL:P95434 (EMBL:U56077) (85 aa) fasta scores: E(): 2.7e-13%2C 68.05 38d in 72 aa	gene	gene4209	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0041
YEP0042	YEP0042	yscG	yscG	31625	31972	+	putative type III secretion protein	Previously sequenced: Yersinia enterocolitica putative yop proteins translocation protein G YscG SWALL:YSCG_YEREN (SWALL:Q01248) (115 aa) fasta scores: E(): 3.7e-45%2C 96.52 38d in 115 aa. Also highly similar to Yersinia pestis yop proteins translocation protein G homolog YscG or Ypcd1.56 SWALL:O68690 (EMBL:AF053946) (115 aa) fasta scores: E(): 3.5e-44%2C 96.52 38d in 115 aa%2C and to Pseudomonas aeruginosa PscG or Pa1720 SWALL:P95435 (EMBL:U56077) (115 aa) fasta scores: E(): 4.5e-21%2C 55.14 id in 107 aa	gene	gene4210	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0042
YEP0043	YEP0043	yscH	yscH	31969	32466	+	putative type III secretion protein	Previously sequenced: Yersinia enterocolitica yop proteins translocation protein H YscH SWALL:YSCH_YEREN (SWALL:Q01249) (165 aa) fasta scores: E(): 8.6e-58%2C 98.18 id in 165 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein H YscH or lcrp or ypcd1.57 or y0024 SWALL:YSCH_YERPE (SWALL:Q00929) (165 aa) fasta scores: E(): 5.7e-56%2C 96.97 38d in 165 aa%2C and to Pseudomonas aeruginosa type III export protein PscH or Pa1721 SWALL:Q9I316 (EMBL:AE004598) (143 aa) fasta scores: E(): 0.0003%2C 36.55 38d in 93 aa	gene	gene4211	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0043
YEP0044	YEP0044	yscI	yscI	32467	32814	+	putative type III secretion protein	Previously sequenced: Yersinia enterocolitica yop proteins translocation protein I YscI SWALL:YSCI_YEREN (SWALL:Q01250) (115 aa) fasta scores: E(): 2e-40%2C 99.13 id in 115 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein I YscI or lcro or ypcd1.58 or y0023 SWALL:YSCI_YERPE (SWALL:Q00933) (115 aa) fasta scores: E(): 2.6e-39%2C 95.65 38d in 115 aa%2C and to Pseudomonas aeruginosa type III export protein PscI or pa1722 SWALL:Q9I315 (EMBL:AE004598) (112 aa) fasta scores: E(): 5e-13%2C 50.46 38d in 107 aa	gene	gene4212	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0044
YEP0045	YEP0045	yscJ	yscJ	32821	33555	+	type III secretion lipoprotein	Previously sequenced: Yersinia enterocolitica yop proteins translocation lipoprotein J precursor YscJ or YlpB SWALL:YSCJ_YEREN (SWALL:Q01251) (244 aa) fasta scores: E(): 4.9e-87%2C 100 38d in 244 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation lipoprotein J precursor YscJ or YlpB or LcrkA or Ypcd1.59 or y0022 SWALL:YSCJ_YERPE (SWALL:Q00926) (244 aa) fasta scores: E(): 1.3e-86%2C 99.59 38d in 244 aa%2C and to Pseudomonas aeruginosa type iii export protein PscJ or pa1723 SWALL:Q9I314 (EMBL:AE004598) (248 aa) fasta scores: E(): 1.5e-62%2C 71.54 38d in 239 aa	gene	gene4213	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0045
YEP0046	YEP0046	yscK	yscK	33555	34184	+	type III secretion protein	Previously sequenced:Yersinia enterocolitica yop proteins translocation protein K YscK SWALL:YSCK_YEREN (SWALL:Q01252) (209 aa) fasta scores: E(): 2.7e-86%2C 99.52 id in 209 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein k ysck or lcrkb or ypcd1.60 or y0021 SWALL:YSCK_YERPE (SWALL:Q00927) (209 aa) fasta scores: E(): 2.4e-86%2C 99.52 38d in 209 aa%2C and to Pseudomonas aeruginosa type iii export protein PscK or Pa1724 SWALL:Q9I313 (EMBL:AE004598) (208 aa) fasta scores: E(): 4.6e-27%2C 40.97 38d in 205 aa	gene	gene4214	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0046
YEP0047	YEP0047	yscL	yscL	34130	34801	+	type III secretion system protein	Previously sequenced as: Yersinia enterocolitica yop proteins translocation protein L YscL SWALL:YSCL_YEREN (SWALL:Q01253) (223 aa) fasta scores: E(): 5.2e-75%2C 98.65 id in 223 aa. Also highly similar to Pseudomonas aeruginosa type III export protein PscL or pa1725 SWALL:Q9I312 (EMBL:AE004598) (214 aa) fasta scores: E(): 1.4e-38%2C 56.58 38d in 205 aa	gene	gene4215	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0047
YEP0048	YEP0048	yscM	yscM	35020	35367	+	putative type III secretion regulatory protein	Previously sequenced as: Yersinia enterocolitica yop proteins translocation protein M YscM SWALL:YSCM_YEREN (SWALL:Q01254) (115 aa) fasta scores: E(): 1.8e-41%2C 100 id in 115 aa%2C and to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein m yscm or lcrq or ypcd1.62 or y0019 SWALL:YSCM_YERPE (SWALL:Q00930) (115 aa) fasta scores: E(): 3.3e-41%2C 99.13 id in 115 aa	gene	gene4216	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0048
YEP0049	YEP0049		YEP0049	35593	35760	+	hypothetical protein	doubtful CDS with no significant database hits	gene	gene4217	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0049
YEP0050	YEP0050		YEP0050	36049	37455	+	putative protein-tyrosine phosphatase Yop effector		gene	gene4218	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0050
YEP0051	YEP0051		YEP0051	37677	38108	-	putative yopH targeting protein		gene	gene4219	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0051
YEP0052	YEP0052		YEP0052	38462	38854	-	putative YopE chaperone		gene	gene4220	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0052
YEP0053	YEP0053		YEP0053	39047	39706	+	putative outer membrane virulence protein		gene	gene4221	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0053
YEP0054	YEP0054		YEP0054	39747	40172	-			gene	gene4222	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0054
YEP0055	YEP0055		YEP0055	40240	40794	-			gene	gene4223	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0055
YEP0056	YEP0056		YEP0056	40794	40943	-			gene	gene4224	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0056
YEP0057	YEP0057		YEP0057	41132	41434	-	hypothetical protein	Previously sequenced as: Yersinia enterocolitica hypothetical 11.8 kDa protein SWALL:Q93KR9 (EMBL:AF336309) (100 aa) fasta scores: E(): 1.7e-40%2C 100 38d in 100 aa. Also highly similar to Yersinia pestis hypothetical protein y0075 or ypcd1.08C SWALL:Q9ZGW2 (EMBL:AF074612) (99 aa) fasta scores: E(): 3.2e-38%2C 95.96 38d in 99 aa and to Escherichia coli O157:H7 hypothetical protein z0510 z0510 or ecs0462 SWALL:Q8XE95 (EMBL:AE005220) (93 aa) fasta scores: E(): 5.8e-07%2C 35.95 38d in 89 aa	gene	gene4225	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0057
YEP0058	YEP0058		YEP0058	41427	41669	-	hypothetical protein	Previously sequenced as: Yersinia enterocolitica hypothetical 8.9 kDa protein SWALL:Y6A9_YEREN (SWALL:O85269) (80 aa) fasta scores: E(): 1.8e-28%2C 100 38d in 80 aa. Also highly similar to Yersinia pestis hypothetical protein ypcd1.09c or y0074 SWALL:Y6A9_YERPE (SWALL:Q9ZGW3) (80 aa) fasta scores: E(): 1.2e-27%2C 97.5 id in 80 aa and to Vibrio cholerae hypothetical protein Vca0360.1 SWALL:YV6A_VIBCH (SWALL:P58093) (80 aa) fasta scores: E(): 1.2e-08%2C 54.38 38d in 57 aa	gene	gene4226	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0058
YEP0059	YEP0059		YEP0059	41813	42133	-			gene	gene4227	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0059
YEP0061	YEP0061		YEP0061	42931	43893	-	plasmid-partitioning protein	SopB	gene	gene4228	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0061
YEP0062	YEP0062		YEP0062	43893	45059	-	plasmid-partitioning protein SopA		gene	gene4229	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0062
YEP0063	YEP0063		YEP0063	45373	45588	-	hypothetical protein	Similar to Yersinia enterocolitica hypothetical 7.7 kDa protein SWALL:Q93KR6 (EMBL:AF336309) (71 aa) fasta scores: E(): 4.5e-26%2C 97.18 38d in 71 aa	gene	gene4230	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0063
YEP0064	YEP0064		YEP0064	45764	45856	-			gene	gene4231	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0064
YEP0065	YEP0065	yomA	yomA	46109	46984	-	hypothetical protein	Previously sequenced as: Yersinia enterocolitica YomA SWALL:Q93KR5 (EMBL:AF336309) (291 aa) fasta scores: E(): 7.8e-105%2C 100 38d in 291 aa. Also highly similar to Salmonella typhimurium integral membrane protein PagO or stm1862 SWALL:PAGO_SALTY (SWALL:O30646) (304 aa) fasta scores: E(): 1.7e-62%2C 57.39 38d in 284 aa	gene	gene4232	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0065
YEP0066	YEP0066		YEP0066	47054	48322	-	putative YadA invasin		gene	gene4233	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0066
YEP0067	YEP0067	trp1400A	trp1400A	48870	48923	+			gene	gene4234	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0067
YEP0068	YEP0068	trp1400B	trp1400B	48925	49479	+			gene	gene4235	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0068
YEP0069	YEP0069		YEP0069	49605	50807	+	transposase	Highly similar to Shewanella oneidensis ISsod4%2Ctransposase so2292 SWALL:AAN55332 (EMBL:AE015670) (400 aa) fasta scores: E(): 1.5e-123%2C 75.25 38d in 400 aa%2C and to Yersinia enterocolitica hypothetical 45.7 kDa protein tnP SWALL:Q93KR3 (EMBL:AF336309) (400 aa) fasta scores: E(): 4.1e-156%2C 99.75 38d in 400 aa	gene	gene4236	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0069
YEP0071	YEP0071		YEP0071	50937	51245	-	hypothetical protein	Previously sequenced as: Yersinia enterocolitica hypothetical 11.4 kDa protein SWALL:Q93KR2 (EMBL:AF336309) (102 aa) fasta scores: E(): 1.9e-34%2C 100 38d in 102 aa	gene	gene4237	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0071
YEP0072	YEP0072		YEP0072	51245	51874	-	hypothetical protein	Previously sequenced as: Yersinia enterocolitica hypothetical 22.3 kDa protein SWALL:Q93KR1 (EMBL:AF336309) (209 aa) fasta scores: E(): 9.8e-72%2C 100 38d in 209 aa. Also similar to several plasmid partition proteins including: Xanthomonas axonopodis partition protein A ParA SWALL:Q8NKZ8 (EMBL:AE008924) (208 aa) fasta scores: E(): 2.9e-06%2C 31.28 38d in 195 aa and to Agrobacterium tumefaciens ParA protein SWALL:PARA_AGRTU (SWALL:P07175) (222 aa) fasta scores: E(): 0.099%2C 25.98 38d in 204 aa	gene	gene4238	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0072
YEP0073	YEP0073		YEP0073	52049	52783	-	putative resolvase/recombinase	Similar to many site-specific recombinases including: Escherichia coli resolvase ResD SWALL:REDF_ECOLI (SWALL:P06615) (268 aa) fasta scores: E(): 2.6e-17%2C 47.24 38d in 254 aa%2C Yersinia enterocolitica hypothetical 27.8 kDa protein SWALL:Q93KR0 (EMBL:AF336309) (244 aa) fasta scores: E(): 1.1e-98%2C 100 38d in 244 aa and Escherichia coli probable site-specific recombinase IntM or inT SWALL:INTM_ECOLI (SWALL:P56979) (246 aa) fasta scores: E(): 9.3e-44%2C 50.4 38d in 248 aa	gene	gene4239	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0073
YEP0074	YEP0074		YEP0074	52920	53117	-	hypothetical protein	Previously sequenced as: Yersinia enterocolitica hypothetical 7.4 kDa protein SWALL:Q93KQ9 (EMBL:AF336309) (65 aa) fasta scores: E(): 5.4e-28%2C 100 38d in 65 aa	gene	gene4240	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0074
YEP0075	YEP0075		YEP0075	53569	54147	+			gene	gene4241	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0075
YEP0076	YEP0076		YEP0076	54207	54509	-			gene	gene4242	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0076
YEP0078	YEP0078		YEP0078	54959	55135	-			gene	gene4243	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0078
YEP0080	YEP0080		YEP0080	55297	55728	+	hypothetical protein		gene	gene4244	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0080
YEP0081	YEP0081	yopO	yopO	55746	57935	+	putative targeted effector protein kinase	Highly similar to Yersinia pseudotuberculosis effector protein kinase YpkA precursor SWALL:YPKA_YERPS (SWALL:Q05608) (732 aa) fasta scores: E(): 0%2C 96.98 38d in 729 aa and to Yersinia enterocolitica protein kinase YopO SWALL:Q93KQ6 (EMBL:AF336309) (729 aa) fasta scores: E(): 0%2C 100 38d in 729 aa	gene	gene4245	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0081
YEP0082	YEP0082		YEP0082	58175	58301	+			gene	gene4246	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0082
YEP0083	YEP0083	yopJ	yopJ	58302	59168	+	putative targeted effector protein	Similar to Yersinia pseudotuberculosis YopJ type III secretion system effector protein SWALL:YOPJ_YERPS (SWALL:P31498) (264 aa) fasta scores: E(): 2.6e-88%2C 92 38d in 250 aa%2C and to Yersinia enterocolitica Yop effector YopP SWALL:Q93KQ5 (EMBL:AF336309) (288 aa) fasta scores: E(): 7.4e-112%2C 100 38d in 288 aa	gene	gene4247	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0083
YEP0084	YEP0084		YEP0084	59262	59393	+			gene	gene4248	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0084
YEP0086	YEP0086	yscM2	yscM2	59787	60137	+	regulatory protein	Previously sequenced as: Yersinia enterocolitica regulatory protein Yscm2 SWALL:Q93KQ4 (EMBL:AF336309) (116 aa) fasta scores: E(): 4.9e-40%2C 100 38d in 116 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis Yop proteins translocation protein M YscM or LcrQ or ypcd1.62 or y0019 SWALL:YSCM_YERPE (SWALL:Q00930) (115 aa) fasta scores: E(): 1.2e-17%2C 59.09 id in 110 aa	gene	gene4249	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0086
YEP0087	YEP0087	tnpA	tnpA	60325	61009	+			gene	gene4250	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0087
YEP0088	YEP0088		YEP0088	61007	61570	-			gene	gene4251	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0088
YEP0089	YEP0089		YEP0089	61617	62168	-	hypothetical protein	Similar to many nucleases including: Proteus vulgaris EDTA-resistant nuclease SWALL:BAB93759 (EMBL:AP004237) (221 aa) fasta scores: E(): 3.3e-11%2C38.09 38d in 126 aa and Salmonella typhimurium EDTA-resistant Nuclease Nuc SWALL:Q9R2H3 (EMBL:AB027308) (183 aa) fasta scores: E(): 1.3e-09%2C 32.09 38d in 134 aa. Previously sequenced as: Yersinia enterocolitica hypothetical 20.4 kDa protein SWALL:Q93KQ3 (EMBL:AF336309) (183 aa) fasta scores: E(): 1.7e-72%2C 100 38d in 183 aa.	gene	gene4252	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0089
YEP0090	YEP0090		YEP0090	62177	62963	-	transposase for insertion sequence element IS1665	Similar the N-terminal and C-terminal regions of many transposases including: Escherichia coli transposase InsG for insertion sequence element IS4 or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 5.5e-50%2C 51.36 38d in 440 aa and to Shigella flexneri is4 orf s0243 SWALL:Q9AFL8 (EMBL:AF348706) (439 aa) fasta scores: E(): 8.5e-53%2C 50.82 38d in 427 aa. This transposase appears to lack the central transposase core domain%2C thought to be involved in metal binding%2C and possesses a possible site for programmed ribosomal frameshifting%2C following codon 150. IS1665 is also highly similar in the N-terminal and C-terminal regions to the Y. enterocolitica IS1660. Both IS1665 and IS1660 share the same inverted repeat sequences.	gene	gene4253	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0090
YEP0092	YEP0092		YEP0092	63019	64356	-	transposase for insertion sequence element IS4	Similar to Escherichia coli transposase InsG for insertion sequence element IS4 or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 4.2e-165%2C89.72 38d in 438 aa	gene	gene4254	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0092
YEP0093	YEP0093		YEP0093	64448	64915	+			gene	gene4255	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0093
YEP0094	YEP0094	tnp	tnp	65333	65791	+	transposase for IS1541	Identical to Yersinia enterocolitica IS1541 element transposase tnp SWALL:Q9X9G8 (EMBL:AJ238015) (152 aa) fasta scores: E(): 4.6e-66%2C 100 38d in 152 aa and highly similar to Yersinia pestis putative transposase y1761 SWALL:AAM85329 (EMBL:AE013779) (169 aa) fasta scores: E(): 8.3e-64%2C 96.71 38d in 152 aa	gene	gene4256	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0094
YEP0095	YEP0095		YEP0095	65993	66238	+	putative plasmid copy number control protein	Similar to Escherichia coli copy number control protein CopB SWALL:Q8RTD2 (EMBL:AF467508) (82 aa) fasta scores: E(): 2.3%2C 30.15 38d in 63 aa. Previously sequenced as: Yersinia enterocolitica putative replication protein RepC SWALL:Q93KQ2 (EMBL:AF336309) (81 aa) fasta scores: E(): 8.6e-31%2C 100 38d in 81 aa	gene	gene4257	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0095
YEP0097	YEP0097	repA	repA	66549	67571	+	replication initiation protein	Similar to Escherichia coli replication initiation protein RepA1 SWALL:REP4_ECOLI (SWALL:P13961) (340 aa) fasta scores: E(): 1.3e-51%2C 43.71 38d in 334 aa. Previously sequenced as: to Yersinia enterocolitica putative replication initiator protein RepA SWALL:Q933Q8 (EMBL:AF336309) (340 aa) fasta scores: E(): 1.7e-138%2C 100 id in 340 aa. Also similar to Klebsiella pneumoniae RepA SWALL:Q48418 (EMBL:U27345) (351 aa) fasta scores: E(): 5.4e-65%2C 54.57 38d in 328 aa	gene	gene4258	http://www.ncbi.nlm.nih.gov/gene/?term=YEP0097
YEr001	YEr001		YEr001	17506	18994	+	16S ribosomal RNA	match to 16S_rRNA 1..1461 (Y.enterocolitica 16S)	rRNA	gene15	http://www.ncbi.nlm.nih.gov/gene/?term=YEr001
YEr002	YEr002		YEr002	19674	22667	+	23S ribosomal RNA	match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity)	rRNA	gene17	http://www.ncbi.nlm.nih.gov/gene/?term=YEr002
YEr003	YEr003		YEr003	22667	22908	+	5S ribosomal RNA	match to 5SrRNA 1..240 Y.enterocolitica	rRNA	gene18	http://www.ncbi.nlm.nih.gov/gene/?term=YEr003
YEr004	YEr004		YEr004	160552	162040	+	16S ribosomal RNA	match to 16S_rRNA 1..1461 (Y.enterocolitica 16S)	rRNA	gene140	http://www.ncbi.nlm.nih.gov/gene/?term=YEr004
YEr005	YEr005		YEr005	162741	165734	+	23S ribosomal RNA	match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity)	rRNA	gene143	http://www.ncbi.nlm.nih.gov/gene/?term=YEr005
YEr006	YEr006		YEr006	165734	165970	+	5S ribosomal RNA	match to 5SrRNA 1..240 Y.enterocolitica	rRNA	gene144	http://www.ncbi.nlm.nih.gov/gene/?term=YEr006
YEr007	YEr007		YEr007	314127	315615	+	16S ribosomal RNA	match to 16S_rRNA 1..1461 (Y.enterocolitica 16S)	rRNA	gene277	http://www.ncbi.nlm.nih.gov/gene/?term=YEr007
YEr008	YEr008		YEr008	316294	319287	+	23S ribosomal RNA	match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity)	rRNA	gene279	http://www.ncbi.nlm.nih.gov/gene/?term=YEr008
YEr009	YEr009		YEr009	319287	319527	+	5S ribosomal RNA	match to 5SrRNA 1..240 Y.enterocolitica	rRNA	gene280	http://www.ncbi.nlm.nih.gov/gene/?term=YEr009
YEr010	YEr010		YEr010	354706	356194	+	16S ribosomal RNA	match to 16S_rRNA 1..1461 (Y.enterocolitica 16S)	rRNA	gene316	http://www.ncbi.nlm.nih.gov/gene/?term=YEr010
YEr011	YEr011		YEr011	356873	359866	+	23S ribosomal RNA	match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity)	rRNA	gene318	http://www.ncbi.nlm.nih.gov/gene/?term=YEr011
YEr012	YEr012		YEr012	359866	360103	+	5S ribosomal RNA	match to 5SrRNA 1..240 Y.enterocolitica	rRNA	gene319	http://www.ncbi.nlm.nih.gov/gene/?term=YEr012
YEr013	YEr013		YEr013	1019206	1020694	+	16S ribosomal RNA	match to 16S_rRNA 1..1461 (Y.enterocolitica 16S)	rRNA	gene893	http://www.ncbi.nlm.nih.gov/gene/?term=YEr013
YEr014	YEr014		YEr014	1021373	1024366	+	23S ribosomal RNA	match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Citrobacter freundii 23S EMBL:U77928)	rRNA	gene895	http://www.ncbi.nlm.nih.gov/gene/?term=YEr014
YEr015	YEr015		YEr015	1024366	1024602	+	5S ribosomal RNA	match to 5SrRNA 1..240 Y.enterocolitica	rRNA	gene896	http://www.ncbi.nlm.nih.gov/gene/?term=YEr015
YEr016	YEr016		YEr016	3546822	3547063	-	5S ribosomal RNA	match to 5SrRNA 1..240 Y.enterocolitica	rRNA	gene3196	http://www.ncbi.nlm.nih.gov/gene/?term=YEr016
YEr017	YEr017		YEr017	3547063	3550056	-	23S ribosomal RNA	match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity)	rRNA	gene3197	http://www.ncbi.nlm.nih.gov/gene/?term=YEr017
YEr018	YEr018		YEr018	3550757	3552245	-	16S ribosomal RNA	match to 16S_rRNA 1..1461 (Y.enterocolitica 16S)	rRNA	gene3200	http://www.ncbi.nlm.nih.gov/gene/?term=YEr018
YEr019	YEr019		YEr019	4239160	4239290	-	5S ribosomal RNA	similar to part of the 5SrRNA	rRNA	gene3833	http://www.ncbi.nlm.nih.gov/gene/?term=YEr019
YEr020	YEr020		YEr020	4239407	4239648	-	5S ribosomal RNA	match to 5SrRNA 1..240 Y.enterocolitica	rRNA	gene3835	http://www.ncbi.nlm.nih.gov/gene/?term=YEr020
YEr021	YEr021		YEr021	4239648	4242641	-	23S ribosomal RNA	match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity)	rRNA	gene3836	http://www.ncbi.nlm.nih.gov/gene/?term=YEr021
YEr022	YEr022		YEr022	4243342	4244830	-	16S ribosomal RNA	match to 16S_rRNA 1..1461 (Y.enterocolitica 16S)	rRNA	gene3839	http://www.ncbi.nlm.nih.gov/gene/?term=YEr022
YEs001	YEs001		YEs001	30017	30134	+			gene	gene25	http://www.ncbi.nlm.nih.gov/gene/?term=YEs001
YEs002	YEs002		YEs002	31382	31582	+			gene	gene27	http://www.ncbi.nlm.nih.gov/gene/?term=YEs002
YEs003	YEs003		YEs003	157085	157301	+			gene	gene137	http://www.ncbi.nlm.nih.gov/gene/?term=YEs003
YEs004	YEs004		YEs004	324050	324207	+			gene	gene287	http://www.ncbi.nlm.nih.gov/gene/?term=YEs004
YEs005	YEs005		YEs005	345526	345651	-			gene	gene306	http://www.ncbi.nlm.nih.gov/gene/?term=YEs005
YEs006	YEs006		YEs006	507310	507428	+			gene	gene454	http://www.ncbi.nlm.nih.gov/gene/?term=YEs006
YEs007	YEs007		YEs007	507658	507838	-			gene	gene456	http://www.ncbi.nlm.nih.gov/gene/?term=YEs007
YEs008	YEs008		YEs008	687073	687191	+			gene	gene606	http://www.ncbi.nlm.nih.gov/gene/?term=YEs008
YEs009	YEs009		YEs009	739972	740050	-			gene	gene647	http://www.ncbi.nlm.nih.gov/gene/?term=YEs009
YEs010	YEs010		YEs010	966432	966506	-			gene	gene834	http://www.ncbi.nlm.nih.gov/gene/?term=YEs010
YEs011	YEs011	ssrA	ssrA	1116169	1116549	-			gene	gene994	http://www.ncbi.nlm.nih.gov/gene/?term=YEs011
YEs012	YEs012		YEs012	1219794	1219897	+			gene	gene1086	http://www.ncbi.nlm.nih.gov/gene/?term=YEs012
YEs013	YEs013		YEs013	1356689	1356852	+			gene	gene1215	http://www.ncbi.nlm.nih.gov/gene/?term=YEs013
YEs014	YEs014		YEs014	1356860	1357023	+			gene	gene1216	http://www.ncbi.nlm.nih.gov/gene/?term=YEs014
YEs015	YEs015		YEs015	1482285	1482585	-			gene	gene1332	http://www.ncbi.nlm.nih.gov/gene/?term=YEs015
YEs016	YEs016	micF	micF	1571499	1571589	-			gene	gene1398	http://www.ncbi.nlm.nih.gov/gene/?term=YEs016
YEs017	YEs017		YEs017	1660972	1661052	-			gene	gene1475	http://www.ncbi.nlm.nih.gov/gene/?term=YEs017
YEs018	YEs018		YEs018	1834478	1834817	-			gene	gene1614	http://www.ncbi.nlm.nih.gov/gene/?term=YEs018
YEs019	YEs019		YEs019	1966735	1966897	-			gene	gene1750	http://www.ncbi.nlm.nih.gov/gene/?term=YEs019
YEs020	YEs020		YEs020	1991547	1991664	-			gene	gene1774	http://www.ncbi.nlm.nih.gov/gene/?term=YEs020
YEs021	YEs021		YEs021	1991571	1991671	+			gene	gene1775	http://www.ncbi.nlm.nih.gov/gene/?term=YEs021
YEs022	YEs022		YEs022	2001664	2001781	+			gene	gene1788	http://www.ncbi.nlm.nih.gov/gene/?term=YEs022
YEs023	YEs023		YEs023	2325478	2325580	-			gene	gene2092	http://www.ncbi.nlm.nih.gov/gene/?term=YEs023
YEs024	YEs024		YEs024	2382205	2382313	+			gene	gene2146	http://www.ncbi.nlm.nih.gov/gene/?term=YEs024
YEs025	YEs025		YEs025	2460631	2460791	+			gene	gene2213	http://www.ncbi.nlm.nih.gov/gene/?term=YEs025
YEs026	YEs026		YEs026	2460805	2460965	+			gene	gene2214	http://www.ncbi.nlm.nih.gov/gene/?term=YEs026
YEs027	YEs027		YEs027	2460979	2461139	+			gene	gene2215	http://www.ncbi.nlm.nih.gov/gene/?term=YEs027
YEs028	YEs028		YEs028	2461153	2461313	+			gene	gene2216	http://www.ncbi.nlm.nih.gov/gene/?term=YEs028
YEs029	YEs029		YEs029	3329500	3329583	-			gene	gene3013	http://www.ncbi.nlm.nih.gov/gene/?term=YEs029
YEs030	YEs030	ffs	ffs	3388000	3388116	-			gene	gene3066	http://www.ncbi.nlm.nih.gov/gene/?term=YEs030
YEs031	YEs031		YEs031	3586741	3586915	-			gene	gene3234	http://www.ncbi.nlm.nih.gov/gene/?term=YEs031
YEs032	YEs032	csrB	csrB	3595392	3595708	-			gene	gene3244	http://www.ncbi.nlm.nih.gov/gene/?term=YEs032
YEs033	YEs033		YEs033	3602754	3602859	+			gene	gene3252	http://www.ncbi.nlm.nih.gov/gene/?term=YEs033
YEs034	YEs034		YEs034	3638306	3638400	-			gene	gene3281	http://www.ncbi.nlm.nih.gov/gene/?term=YEs034
YEs035	YEs035	ssrS	ssrS	3711866	3712059	+			gene	gene3351	http://www.ncbi.nlm.nih.gov/gene/?term=YEs035
YEs036	YEs036		YEs036	4002700	4002884	-			gene	gene3626	http://www.ncbi.nlm.nih.gov/gene/?term=YEs036
YEs037	YEs037		YEs037	4045482	4045665	+			gene	gene3660	http://www.ncbi.nlm.nih.gov/gene/?term=YEs037
YEs038	YEs038		YEs038	4067369	4067671	-			gene	gene3683	http://www.ncbi.nlm.nih.gov/gene/?term=YEs038
YEs039	YEs039		YEs039	4258864	4258975	-			gene	gene3859	http://www.ncbi.nlm.nih.gov/gene/?term=YEs039
YEs040	YEs040		YEs040	4382149	4382251	-			gene	gene3981	http://www.ncbi.nlm.nih.gov/gene/?term=YEs040
YEt001	YEt001		YEt001	19220	19295	+	tRNA-Glu		tRNA	gene16	http://www.ncbi.nlm.nih.gov/gene/?term=YEt001
YEt002	YEt002		YEt002	162169	162245	+	tRNA-Ile		tRNA	gene141	http://www.ncbi.nlm.nih.gov/gene/?term=YEt002
YEt003	YEt003		YEt003	162320	162395	+	tRNA-Ala		tRNA	gene142	http://www.ncbi.nlm.nih.gov/gene/?term=YEt003
YEt004	YEt004		YEt004	166090	166166	+	tRNA-Asp		tRNA	gene145	http://www.ncbi.nlm.nih.gov/gene/?term=YEt004
YEt005	YEt005		YEt005	166220	166295	+	tRNA-Trp		tRNA	gene146	http://www.ncbi.nlm.nih.gov/gene/?term=YEt005
YEt006	YEt006		YEt006	217919	217995	+	tRNA-Arg		tRNA	gene187	http://www.ncbi.nlm.nih.gov/gene/?term=YEt006
YEt007	YEt007		YEt007	218079	218154	+	tRNA-His		tRNA	gene188	http://www.ncbi.nlm.nih.gov/gene/?term=YEt007
YEt008	YEt008		YEt008	218170	218256	+	tRNA-Leu		tRNA	gene189	http://www.ncbi.nlm.nih.gov/gene/?term=YEt008
YEt009	YEt009		YEt009	218332	218408	+	tRNA-Pro		tRNA	gene190	http://www.ncbi.nlm.nih.gov/gene/?term=YEt009
YEt010	YEt010		YEt010	315840	315915	+	tRNA-Glu		tRNA	gene278	http://www.ncbi.nlm.nih.gov/gene/?term=YEt010
YEt011	YEt011		YEt011	323856	323931	+	tRNA-Thr		tRNA	gene285	http://www.ncbi.nlm.nih.gov/gene/?term=YEt011
YEt012	YEt012		YEt012	323950	324034	+	tRNA-Tyr		tRNA	gene286	http://www.ncbi.nlm.nih.gov/gene/?term=YEt012
YEt013	YEt013		YEt013	324352	324426	+	tRNA-Gly		tRNA	gene288	http://www.ncbi.nlm.nih.gov/gene/?term=YEt013
YEt014	YEt014		YEt014	324433	324508	+	tRNA-Thr		tRNA	gene289	http://www.ncbi.nlm.nih.gov/gene/?term=YEt014
YEt015	YEt015		YEt015	356419	356494	+	tRNA-Glu		tRNA	gene317	http://www.ncbi.nlm.nih.gov/gene/?term=YEt015
YEt016	YEt016		YEt016	411468	411543	-	tRNA-Phe		tRNA	gene360	http://www.ncbi.nlm.nih.gov/gene/?term=YEt016
YEt017	YEt017		YEt017	437336	437411	+	tRNA-Gly		tRNA	gene385	http://www.ncbi.nlm.nih.gov/gene/?term=YEt017
YEt018	YEt018		YEt018	437503	437578	+	tRNA-Gly		tRNA	gene386	http://www.ncbi.nlm.nih.gov/gene/?term=YEt018
YEt019	YEt019		YEt019	437653	437728	+	tRNA-Gly		tRNA	gene387	http://www.ncbi.nlm.nih.gov/gene/?term=YEt019
YEt020	YEt020		YEt020	500681	500767	+	tRNA-Leu		tRNA	gene447	http://www.ncbi.nlm.nih.gov/gene/?term=YEt020
YEt021	YEt021		YEt021	500828	500904	+	tRNA-Met		tRNA	gene448	http://www.ncbi.nlm.nih.gov/gene/?term=YEt021
YEt022	YEt022		YEt022	579198	579282	+	tRNA-Leu		tRNA	gene516	http://www.ncbi.nlm.nih.gov/gene/?term=YEt022
YEt023	YEt023		YEt023	643860	643946	-	tRNA-Leu		tRNA	gene567	http://www.ncbi.nlm.nih.gov/gene/?term=YEt023
YEt024	YEt024		YEt024	644011	644097	-	tRNA-Leu		tRNA	gene568	http://www.ncbi.nlm.nih.gov/gene/?term=YEt024
YEt025	YEt025		YEt025	962917	963009	+	tRNA-Ser		tRNA	gene828	http://www.ncbi.nlm.nih.gov/gene/?term=YEt025
YEt026	YEt026		YEt026	963018	963094	+	tRNA-Arg		tRNA	gene829	http://www.ncbi.nlm.nih.gov/gene/?term=YEt026
YEt027	YEt027		YEt027	963153	963229	+	tRNA-Arg		tRNA	gene830	http://www.ncbi.nlm.nih.gov/gene/?term=YEt027
YEt028	YEt028		YEt028	1020919	1020994	+	tRNA-Glu		tRNA	gene894	http://www.ncbi.nlm.nih.gov/gene/?term=YEt028
YEt029	YEt029		YEt029	1024722	1024798	+	tRNA-Asp		tRNA	gene897	http://www.ncbi.nlm.nih.gov/gene/?term=YEt029
YEt030	YEt030		YEt030	1049625	1049701	+	tRNA-Asp		tRNA	gene925	http://www.ncbi.nlm.nih.gov/gene/?term=YEt030
YEt031	YEt031		YEt031	1354016	1354091	-	tRNA-Ala		tRNA	gene1208	http://www.ncbi.nlm.nih.gov/gene/?term=YEt031
YEt032	YEt032		YEt032	1354171	1354246	-	tRNA-Ala		tRNA	gene1209	http://www.ncbi.nlm.nih.gov/gene/?term=YEt032
YEt033	YEt033		YEt033	1356094	1356169	+	tRNA-Val		tRNA	gene1211	http://www.ncbi.nlm.nih.gov/gene/?term=YEt033
YEt034	YEt034		YEt034	1356224	1356299	+	tRNA-Val		tRNA	gene1212	http://www.ncbi.nlm.nih.gov/gene/?term=YEt034
YEt035	YEt035		YEt035	1356339	1356414	+	tRNA-Val		tRNA	gene1213	http://www.ncbi.nlm.nih.gov/gene/?term=YEt035
YEt036	YEt036		YEt036	1356606	1356681	+	tRNA-Lys		tRNA	gene1214	http://www.ncbi.nlm.nih.gov/gene/?term=YEt036
YEt037	YEt037		YEt037	1405212	1405286	-	tRNA-Arg		tRNA	gene1262	http://www.ncbi.nlm.nih.gov/gene/?term=YEt037
YEt038	YEt038		YEt038	1573270	1573357	+	tRNA-Ser		tRNA	gene1400	http://www.ncbi.nlm.nih.gov/gene/?term=YEt038
YEt039	YEt039		YEt039	1573364	1573439	+	tRNA-Thr		tRNA	gene1401	http://www.ncbi.nlm.nih.gov/gene/?term=YEt039
YEt040	YEt040		YEt040	1591923	1591999	-	tRNA-Pro		tRNA	gene1417	http://www.ncbi.nlm.nih.gov/gene/?term=YEt040
YEt041	YEt041		YEt041	1796717	1796804	+	tRNA-Ser		tRNA	gene1584	http://www.ncbi.nlm.nih.gov/gene/?term=YEt041
YEt042	YEt042		YEt042	2002787	2002862	+	tRNA-Thr		tRNA	gene1790	http://www.ncbi.nlm.nih.gov/gene/?term=YEt042
YEt043	YEt043		YEt043	2002864	2002938	+	tRNA-Gly		tRNA	gene1791	http://www.ncbi.nlm.nih.gov/gene/?term=YEt043
YEt044	YEt044		YEt044	2013450	2013535	-	tRNA-Leu		tRNA	gene1806	http://www.ncbi.nlm.nih.gov/gene/?term=YEt044
YEt045	YEt045		YEt045	2013546	2013619	-	tRNA-Cys		tRNA	gene1807	http://www.ncbi.nlm.nih.gov/gene/?term=YEt045
YEt046	YEt046		YEt046	2013670	2013745	-	tRNA-Gly		tRNA	gene1808	http://www.ncbi.nlm.nih.gov/gene/?term=YEt046
YEt047	YEt047		YEt047	2133260	2133335	+	tRNA-Lys		tRNA	gene1927	http://www.ncbi.nlm.nih.gov/gene/?term=YEt047
YEt048	YEt048		YEt048	2365851	2365927	+	tRNA-Val		tRNA	gene2131	http://www.ncbi.nlm.nih.gov/gene/?term=YEt048
YEt049	YEt049		YEt049	2365976	2366052	+	tRNA-Val		tRNA	gene2132	http://www.ncbi.nlm.nih.gov/gene/?term=YEt049
YEt050	YEt050		YEt050	2366095	2366171	+	tRNA-Val		tRNA	gene2133	http://www.ncbi.nlm.nih.gov/gene/?term=YEt050
YEt051	YEt051		YEt051	2460533	2460617	+	tRNA-Tyr		tRNA	gene2212	http://www.ncbi.nlm.nih.gov/gene/?term=YEt051
YEt052	YEt052		YEt052	2613470	2613559	+	tRNA-Ser		tRNA	gene2373	http://www.ncbi.nlm.nih.gov/gene/?term=YEt052
YEt053	YEt053		YEt053	2614794	2614883	+	tRNA-Ser		tRNA	gene2375	http://www.ncbi.nlm.nih.gov/gene/?term=YEt053
YEt054	YEt054		YEt054	2810915	2810990	+	tRNA-Asn		tRNA	gene2550	http://www.ncbi.nlm.nih.gov/gene/?term=YEt054
YEt055	YEt055		YEt055	2881784	2881859	+	tRNA-Asn		tRNA	gene2597	http://www.ncbi.nlm.nih.gov/gene/?term=YEt055
YEt056	YEt056		YEt056	2893538	2893613	+	tRNA-Asn		tRNA	gene2605	http://www.ncbi.nlm.nih.gov/gene/?term=YEt056
YEt057	YEt057		YEt057	3185286	3185361	-	tRNA-Lys		tRNA	gene2871	http://www.ncbi.nlm.nih.gov/gene/?term=YEt057
YEt058	YEt058		YEt058	3185420	3185495	-	tRNA-Lys		tRNA	gene2872	http://www.ncbi.nlm.nih.gov/gene/?term=YEt058
YEt059	YEt059		YEt059	3185592	3185662	-	tRNA-OTHER	tRNA Pseudo anticodon TTT	tRNA	gene2873	http://www.ncbi.nlm.nih.gov/gene/?term=YEt059
YEt060	YEt060		YEt060	3185720	3185795	-	tRNA-Lys		tRNA	gene2874	http://www.ncbi.nlm.nih.gov/gene/?term=YEt060
YEt061	YEt061		YEt061	3185886	3185958	-	tRNA-Lys		tRNA	gene2875	http://www.ncbi.nlm.nih.gov/gene/?term=YEt061
YEt062	YEt062		YEt062	3252927	3253003	+	tRNA-Met		tRNA	gene2931	http://www.ncbi.nlm.nih.gov/gene/?term=YEt062
YEt063	YEt063		YEt063	3253019	3253103	+	tRNA-Leu		tRNA	gene2932	http://www.ncbi.nlm.nih.gov/gene/?term=YEt063
YEt064	YEt064		YEt064	3253127	3253201	+	tRNA-Gln		tRNA	gene2933	http://www.ncbi.nlm.nih.gov/gene/?term=YEt064
YEt065	YEt065		YEt065	3253325	3253399	+	tRNA-Gln		tRNA	gene2934	http://www.ncbi.nlm.nih.gov/gene/?term=YEt065
YEt066	YEt066		YEt066	3253431	3253507	+	tRNA-Met		tRNA	gene2935	http://www.ncbi.nlm.nih.gov/gene/?term=YEt066
YEt067	YEt067		YEt067	3253513	3253587	+	tRNA-Gln		tRNA	gene2936	http://www.ncbi.nlm.nih.gov/gene/?term=YEt067
YEt068	YEt068		YEt068	3311810	3311886	-	tRNA-Arg		tRNA	gene2995	http://www.ncbi.nlm.nih.gov/gene/?term=YEt068
YEt069	YEt069		YEt069	3550402	3550477	-	tRNA-Ala		tRNA	gene3198	http://www.ncbi.nlm.nih.gov/gene/?term=YEt069
YEt070	YEt070		YEt070	3550552	3550628	-	tRNA-Ile		tRNA	gene3199	http://www.ncbi.nlm.nih.gov/gene/?term=YEt070
YEt071	YEt071		YEt071	3607498	3607574	+	tRNA-Met		tRNA	gene3258	http://www.ncbi.nlm.nih.gov/gene/?term=YEt071
YEt072	YEt072		YEt072	3607677	3607753	+	tRNA-Met		tRNA	gene3259	http://www.ncbi.nlm.nih.gov/gene/?term=YEt072
YEt073	YEt073		YEt073	3607805	3607881	+	tRNA-Met		tRNA	gene3260	http://www.ncbi.nlm.nih.gov/gene/?term=YEt073
YEt074	YEt074		YEt074	3685747	3685820	-	tRNA-Gly		tRNA	gene3327	http://www.ncbi.nlm.nih.gov/gene/?term=YEt074
YEt075	YEt075		YEt075	3761922	3761997	+	tRNA-Phe		tRNA	gene3399	http://www.ncbi.nlm.nih.gov/gene/?term=YEt075
YEt076	YEt076		YEt076	3828040	3828092	-	tRNA-Phe	duplicated fragment of tRNA-phe thought to be associated with insertion of YAPI pathogenicity island	tRNA	gene3467	http://www.ncbi.nlm.nih.gov/gene/?term=YEt076
YEt077	YEt077		YEt077	4021243	4021319	+	tRNA-Met		tRNA	gene3641	http://www.ncbi.nlm.nih.gov/gene/?term=YEt077
YEt078	YEt078		YEt078	4239324	4239399	-	tRNA-Thr		tRNA	gene3834	http://www.ncbi.nlm.nih.gov/gene/?term=YEt078
YEt079	YEt079		YEt079	4242987	4243062	-	tRNA-Ala		tRNA	gene3837	http://www.ncbi.nlm.nih.gov/gene/?term=YEt079
YEt080	YEt080		YEt080	4243137	4243213	-	tRNA-Ile		tRNA	gene3838	http://www.ncbi.nlm.nih.gov/gene/?term=YEt080
YEt081	YEt081		YEt081	4469630	4469706	-	tRNA-Pro		tRNA	gene4044	http://www.ncbi.nlm.nih.gov/gene/?term=YEt081
YEt082	YEt082	selC	selC	4504182	4504272	-	tRNA-Sec	anticodon: UCA selenocysteine tRNA%3B go_component: cytoplasm [goid 0005737]%3B go_process: tRNA metabolism [goid 0006399]%3B transfer RNA-SelC(p) (TCA)	tRNA	gene4074	http://www.ncbi.nlm.nih.gov/gene/?term=YEt082