locus-tag class description Y11_RS00005 PF00308 Bacterial dnaA protein Y11_RS00010 PF03960 ArsC family Y11_RS00015 PF01435 Peptidase family M48 Y11_RS00015 PF07720 Tetratricopeptide repeat Y11_RS00020 PF01594 AI-2E family transporter Y11_RS00025 PF00578 AhpC/TSA family Y11_RS00030 PF01842 ACT domain Y11_RS00035 PF00701 Dihydrodipicolinate synthetase family Y11_RS00040 PF06804 NlpB/DapX lipoprotein Y11_RS00045 PF01259 SAICAR synthetase Y11_RS00050 PF04228 Putative neutral zinc metallopeptidase Y11_RS00055 PF04284 Protein of unknown function (DUF441) Y11_RS00060 PF17176 tRNA-binding domain Y11_RS00060 PF13718 GNAT acetyltransferase 2 Y11_RS00060 PF05127 Helicase Y11_RS00075 PF02230 Phospholipase/Carboxylesterase Y11_RS00085 PF03245 Bacteriophage Rz lysis protein Y11_RS00090 PF01548 Transposase Y11_RS00090 PF02371 Transposase IS116/IS110/IS902 family Y11_RS00095 PF01548 Transposase Y11_RS00095 PF02371 Transposase IS116/IS110/IS902 family Y11_RS00110 PF13505 Outer membrane protein beta-barrel domain Y11_RS00125 PF13980 Uncharacterised protein family (UPF0370) Y11_RS00130 PF02557 D-alanyl-D-alanine carboxypeptidase Y11_RS00135 PF07687 Peptidase dimerisation domain Y11_RS00135 PF01546 Peptidase family M20/M25/M40 Y11_RS00140 PF03960 ArsC family Y11_RS00155 PF00873 AcrB/AcrD/AcrF family Y11_RS00165 PF00196 Bacterial regulatory proteins, luxR family Y11_RS00165 PF00072 Response regulator receiver domain Y11_RS00175 PF03927 NapD protein Y11_RS00180 PF00384 Molybdopterin oxidoreductase Y11_RS00180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS00180 PF10518 TAT (twin-arginine translocation) pathway signal sequence Y11_RS00180 PF01568 Molydopterin dinucleotide binding domain Y11_RS00185 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) Y11_RS00190 PF03264 NapC/NirT cytochrome c family, N-terminal region Y11_RS00195 PF00293 NUDIX domain Y11_RS00200 PF03949 Malic enzyme, NAD binding domain Y11_RS00200 PF00390 Malic enzyme, N-terminal domain Y11_RS00200 PF01515 Phosphate acetyl/butaryl transferase Y11_RS00205 PF02371 Transposase IS116/IS110/IS902 family Y11_RS00205 PF01548 Transposase Y11_RS00220 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Y11_RS00225 PF01218 Coproporphyrinogen III oxidase Y11_RS00230 PF00583 Acetyltransferase (GNAT) family Y11_RS00235 PF04076 Bacterial OB fold (BOF) protein Y11_RS00240 PF06572 Protein of unknown function (DUF1131) Y11_RS00245 PF04261 Dyp-type peroxidase family Y11_RS00255 PF00701 Dihydrodipicolinate synthetase family Y11_RS00260 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Y11_RS00265 PF00480 ROK family Y11_RS00270 PF04074 YhcH/YjgK/YiaL Y11_RS00275 PF01418 Helix-turn-helix domain, rpiR family Y11_RS00275 PF01380 SIS domain Y11_RS00280 PF07690 Major Facilitator Superfamily Y11_RS00290 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS00295 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS00300 PF00005 ABC transporter Y11_RS00305 PF00291 Pyridoxal-phosphate dependent enzyme Y11_RS00315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_RS00325 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS00325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS00325 PF00672 HAMP domain Y11_RS00325 PF16527 Two-component sensor protein CpxA, periplasmic domain Y11_RS00330 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Y11_RS00335 PF00391 PEP-utilising enzyme, mobile domain Y11_RS00335 PF05524 PEP-utilising enzyme, N-terminal Y11_RS00335 PF02896 PEP-utilising enzyme, TIM barrel domain Y11_RS00340 PF00381 PTS HPr component phosphorylation site Y11_RS00345 PF00291 Pyridoxal-phosphate dependent enzyme Y11_RS00355 PF04354 ZipA, C-terminal FtsZ-binding domain Y11_RS00360 PF00533 BRCA1 C Terminus (BRCT) domain Y11_RS00360 PF01653 NAD-dependent DNA ligase adenylation domain Y11_RS00360 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Y11_RS00360 PF12826 Helix-hairpin-helix motif Y11_RS00360 PF03120 NAD-dependent DNA ligase OB-fold domain Y11_RS00365 PF12843 Putative quorum-sensing-regulated virulence factor Y11_RS00390 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y11_RS00415 PF01773 Na+ dependent nucleoside transporter N-terminus Y11_RS00415 PF07670 Nucleoside recognition Y11_RS00415 PF07662 Na+ dependent nucleoside transporter C-terminus Y11_RS00420 PF01566 Natural resistance-associated macrophage protein Y11_RS00430 PF00248 Aldo/keto reductase family Y11_RS00435 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_RS00435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_RS00435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_RS00440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS00440 PF03466 LysR substrate binding domain Y11_RS00450 PF02685 Glucokinase Y11_RS00455 PF02371 Transposase IS116/IS110/IS902 family Y11_RS00455 PF01548 Transposase Y11_RS00460 PF07690 Major Facilitator Superfamily Y11_RS00465 PF00072 Response regulator receiver domain Y11_RS00465 PF04397 LytTr DNA-binding domain Y11_RS00470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS00470 PF06580 Histidine kinase Y11_RS00470 PF07694 5TMR of 5TMR-LYT Y11_RS00475 PF07350 Protein of unknown function (DUF1479) Y11_RS00485 PF00155 Aminotransferase class I and II Y11_RS00490 PF01292 Prokaryotic cytochrome b561 Y11_RS00505 PF01810 LysE type translocator Y11_RS00510 PF00005 ABC transporter Y11_RS00515 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS00525 PF13406 Transglycosylase SLT domain Y11_RS00530 PF00324 Amino acid permease Y11_RS00535 PF07969 Amidohydrolase family Y11_RS00545 PF07690 Major Facilitator Superfamily Y11_RS00550 PF02405 Permease MlaE Y11_RS00555 PF00005 ABC transporter Y11_RS00575 PF13472 GDSL-like Lipase/Acylhydrolase family Y11_RS00575 PF07859 alpha/beta hydrolase fold Y11_RS00580 PF01292 Prokaryotic cytochrome b561 Y11_RS00590 PF00356 Bacterial regulatory proteins, lacI family Y11_RS00595 PF02378 Phosphotransferase system, EIIC Y11_RS00595 PF00367 phosphotransferase system, EIIB Y11_RS00600 PF00232 Glycosyl hydrolase family 1 Y11_RS00610 PF03551 Transcriptional regulator PadR-like family Y11_RS00615 PF08274 PhnA Zinc-Ribbon Y11_RS00615 PF03831 PhnA domain Y11_RS00630 PF01226 Formate/nitrite transporter Y11_RS00635 PF00005 ABC transporter Y11_RS00640 PF03379 CcmB protein Y11_RS00645 PF01578 Cytochrome C assembly protein Y11_RS00650 PF04995 Heme exporter protein D (CcmD) Y11_RS00655 PF03100 CcmE Y11_RS00660 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Y11_RS00660 PF01578 Cytochrome C assembly protein Y11_RS00665 PF08534 Redoxin Y11_RS00670 PF03918 Cytochrome C biogenesis protein Y11_RS00675 PF03918 Cytochrome C biogenesis protein Y11_RS00680 PF04333 MlaA lipoprotein Y11_RS00685 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y11_RS00690 PF04175 Protein of unknown function (DUF406) Y11_RS00695 PF02803 Thiolase, C-terminal domain Y11_RS00695 PF00108 Thiolase, N-terminal domain Y11_RS00700 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y11_RS00700 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y11_RS00700 PF00378 Enoyl-CoA hydratase/isomerase Y11_RS00705 PF00300 Histidine phosphatase superfamily (branch 1) Y11_RS00710 PF01713 Smr domain Y11_RS00715 PF05175 Methyltransferase small domain Y11_RS00720 PF01264 Chorismate synthase Y11_RS00725 PF03411 Penicillin-insensitive murein endopeptidase Y11_RS00730 PF01925 Sulfite exporter TauE/SafE Y11_RS00735 PF04315 Elongation factor P hydroxylase Y11_RS00740 PF08891 YfcL protein Y11_RS00745 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Y11_RS00745 PF01266 FAD dependent oxidoreductase Y11_RS00750 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_RS00750 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_RS00760 PF01177 Asp/Glu/Hydantoin racemase Y11_RS00770 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Y11_RS00775 PF00232 Glycosyl hydrolase family 1 Y11_RS00780 PF02378 Phosphotransferase system, EIIC Y11_RS00785 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y11_RS00790 PF00356 Bacterial regulatory proteins, lacI family Y11_RS00795 PF00328 Histidine phosphatase superfamily (branch 2) Y11_RS00800 PF03600 Citrate transporter Y11_RS00815 PF11412 Disulphide bond corrector protein DsbC Y11_RS00815 PF02683 Cytochrome C biogenesis protein transmembrane region Y11_RS00825 PF00578 AhpC/TSA family Y11_RS00830 PF00155 Aminotransferase class I and II Y11_RS00835 PF00892 EamA-like transporter family Y11_RS00840 PF00892 EamA-like transporter family Y11_RS00850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_RS00850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y11_RS00850 PF11890 Domain of unknown function (DUF3410) Y11_RS00855 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y11_RS00855 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y11_RS00860 PF01416 tRNA pseudouridine synthase Y11_RS00865 PF09335 SNARE associated Golgi protein Y11_RS00870 PF17848 Acetyl-coA carboxylase zinc finger domain Y11_RS00870 PF01039 Carboxyl transferase domain Y11_RS00875 PF08245 Mur ligase middle domain Y11_RS00875 PF02875 Mur ligase family, glutamate ligase domain Y11_RS00880 PF05036 Sporulation related domain Y11_RS00885 PF02674 Colicin V production protein Y11_RS00890 PF00156 Phosphoribosyl transferase domain Y11_RS00895 PF02441 Flavoprotein Y11_RS00900 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_RS00905 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS00910 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS00915 PF00005 ABC transporter Y11_RS00930 PF01370 NAD dependent epimerase/dehydratase family Y11_RS00930 PF08338 Domain of unknown function (DUF1731) Y11_RS00940 PF12850 Calcineurin-like phosphoesterase superfamily domain Y11_RS00945 PF00293 NUDIX domain Y11_RS00955 PF03611 PTS system sugar-specific permease component Y11_RS00965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_RS00970 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_RS00970 PF00356 Bacterial regulatory proteins, lacI family Y11_RS00975 PF07085 DRTGG domain Y11_RS00975 PF01515 Phosphate acetyl/butaryl transferase Y11_RS00980 PF00871 Acetokinase family Y11_RS00985 PF04217 Protein of unknown function, DUF412 Y11_RS00990 PF03887 YfbU domain Y11_RS00995 PF13419 Haloacid dehalogenase-like hydrolase Y11_RS01005 PF02080 TrkA-C domain Y11_RS01005 PF03600 Citrate transporter Y11_RS01015 PF00155 Aminotransferase class I and II Y11_RS01020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS01020 PF03466 LysR substrate binding domain Y11_RS01025 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Y11_RS01030 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Y11_RS01035 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Y11_RS01035 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Y11_RS01045 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y11_RS01045 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Y11_RS01045 PF10531 SLBB domain Y11_RS01050 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Y11_RS01050 PF01568 Molydopterin dinucleotide binding domain Y11_RS01050 PF00384 Molybdopterin oxidoreductase Y11_RS01050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS01055 PF00146 NADH dehydrogenase Y11_RS01060 PF12838 4Fe-4S dicluster domain Y11_RS01065 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Y11_RS01070 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Y11_RS01075 PF00361 Proton-conducting membrane transporter Y11_RS01075 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y11_RS01080 PF00361 Proton-conducting membrane transporter Y11_RS01085 PF00361 Proton-conducting membrane transporter Y11_RS01095 PF06496 Protein of unknown function (DUF1097) Y11_RS01105 PF01202 Shikimate kinase Y11_RS01110 PF00106 short chain dehydrogenase Y11_RS01115 PF00356 Bacterial regulatory proteins, lacI family Y11_RS01125 PF07690 Major Facilitator Superfamily Y11_RS01130 PF03928 Haem-degrading Y11_RS01135 PF00920 Dehydratase family Y11_RS01140 PF05957 Bacterial protein of unknown function (DUF883) Y11_RS01145 PF00425 chorismate binding enzyme Y11_RS01150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_RS01150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_RS01150 PF16582 Middle domain of thiamine pyrophosphate Y11_RS01155 PF12697 Alpha/beta hydrolase family Y11_RS01160 PF00378 Enoyl-CoA hydratase/isomerase Y11_RS01165 PF13378 Enolase C-terminal domain-like Y11_RS01170 PF00501 AMP-binding enzyme Y11_RS01170 PF13193 AMP-binding enzyme C-terminal domain Y11_RS01175 PF06628 Catalase-related immune-responsive Y11_RS01175 PF00199 Catalase Y11_RS01180 PF07437 YfaZ precursor Y11_RS01185 PF03222 Tryptophan/tyrosine permease family Y11_RS01190 PF00994 Probable molybdopterin binding domain Y11_RS01210 PF00082 Subtilase family Y11_RS01220 PF03974 Ecotin Y11_RS01225 PF00111 2Fe-2S iron-sulfur cluster binding domain Y11_RS01230 PF00268 Ribonucleotide reductase, small chain Y11_RS01235 PF02867 Ribonucleotide reductase, barrel domain Y11_RS01235 PF00317 Ribonucleotide reductase, all-alpha domain Y11_RS01235 PF03477 ATP cone domain Y11_RS01245 PF03989 DNA gyrase C-terminal domain, beta-propeller Y11_RS01245 PF00521 DNA gyrase/topoisomerase IV, subunit A Y11_RS01250 PF09456 RcsC Alpha-Beta-Loop (ABL) Y11_RS01250 PF00072 Response regulator receiver domain Y11_RS01250 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS01250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS01255 PF00072 Response regulator receiver domain Y11_RS01255 PF00196 Bacterial regulatory proteins, luxR family Y11_RS01260 PF16359 RcsD-ABL domain Y11_RS01260 PF01627 Hpt domain Y11_RS01260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS01265 PF07690 Major Facilitator Superfamily Y11_RS01275 PF00267 Gram-negative porin Y11_RS01290 PF00144 Beta-lactamase Y11_RS01300 PF12706 Beta-lactamase superfamily domain Y11_RS01305 PF00672 HAMP domain Y11_RS01305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_RS01305 PF02743 Cache domain Y11_RS01310 PF01278 Omptin family Y11_RS01315 PF06183 DinI-like family Y11_RS01325 PF06530 Phage antitermination protein Q Y11_RS01335 PF01418 Helix-turn-helix domain, rpiR family Y11_RS01335 PF01380 SIS domain Y11_RS01340 PF02378 Phosphotransferase system, EIIC Y11_RS01340 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Y11_RS01340 PF00367 phosphotransferase system, EIIB Y11_RS01345 PF00232 Glycosyl hydrolase family 1 Y11_RS01350 PF00194 Eukaryotic-type carbonic anhydrase Y11_RS01355 PF00872 Transposase, Mutator family Y11_RS01375 PF11893 Domain of unknown function (DUF3413) Y11_RS01375 PF00884 Sulfatase Y11_RS01380 PF07208 Protein of unknown function (DUF1414) Y11_RS01385 PF04245 37-kD nucleoid-associated bacterial protein Y11_RS01390 PF01386 Ribosomal L25p family Y11_RS01395 PF00271 Helicase conserved C-terminal domain Y11_RS01395 PF04851 Type III restriction enzyme, res subunit Y11_RS01400 PF01479 S4 domain Y11_RS01400 PF00849 RNA pseudouridylate synthase Y11_RS01405 PF07690 Major Facilitator Superfamily Y11_RS01410 PF13989 YejG-like protein Y11_RS01415 PF00005 ABC transporter Y11_RS01415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_RS01420 PF12911 N-terminal TM domain of oligopeptide transport permease C Y11_RS01420 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS01425 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS01430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_RS01435 PF12792 CSS motif domain associated with EAL Y11_RS01435 PF00563 EAL domain Y11_RS01445 PF00877 NlpC/P60 family Y11_RS01450 PF01569 PAP2 superfamily Y11_RS01455 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y11_RS01455 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y11_RS01465 PF07729 FCD domain Y11_RS01465 PF00392 Bacterial regulatory proteins, gntR family Y11_RS01470 PF01232 Mannitol dehydrogenase Rossmann domain Y11_RS01470 PF08125 Mannitol dehydrogenase C-terminal domain Y11_RS01480 PF03786 D-mannonate dehydratase (UxuA) Y11_RS01485 PF01132 Elongation factor P (EF-P) OB domain Y11_RS01485 PF08207 Elongation factor P (EF-P) KOW-like domain Y11_RS01485 PF09285 Elongation factor P, C-terminal Y11_RS01490 PF03222 Tryptophan/tyrosine permease family Y11_RS01495 PF03692 Putative zinc- or iron-chelating domain Y11_RS01500 PF01568 Molydopterin dinucleotide binding domain Y11_RS01500 PF18364 Molybdopterin oxidoreductase N-terminal domain Y11_RS01500 PF00384 Molybdopterin oxidoreductase Y11_RS01505 PF03264 NapC/NirT cytochrome c family, N-terminal region Y11_RS01510 PF00293 NUDIX domain Y11_RS01510 PF13344 Haloacid dehalogenase-like hydrolase Y11_RS01515 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_RS01515 PF00381 PTS HPr component phosphorylation site Y11_RS01520 PF00294 pfkB family carbohydrate kinase Y11_RS01530 PF00486 Transcriptional regulatory protein, C terminal Y11_RS01535 PF17550 Family of unknown function Y11_RS01550 PF00577 Outer membrane usher protein Y11_RS01550 PF13954 PapC N-terminal domain Y11_RS01550 PF13953 PapC C-terminal domain Y11_RS01555 PF01261 Xylose isomerase-like TIM barrel Y11_RS01560 PF03601 Conserved hypothetical protein 698 Y11_RS01575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS01575 PF03466 LysR substrate binding domain Y11_RS01580 PF00324 Amino acid permease Y11_RS01585 PF01032 FecCD transport family Y11_RS01590 PF00005 ABC transporter Y11_RS01595 PF07715 TonB-dependent Receptor Plug Domain Y11_RS01595 PF00593 TonB dependent receptor Y11_RS01600 PF13417 Glutathione S-transferase, N-terminal domain Y11_RS01600 PF00043 Glutathione S-transferase, C-terminal domain Y11_RS01615 PF03180 NLPA lipoprotein Y11_RS01620 PF00005 ABC transporter Y11_RS01620 PF09383 NIL domain Y11_RS01625 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS01630 PF01053 Cys/Met metabolism PLP-dependent enzyme Y11_RS01635 PF00571 CBS domain Y11_RS01635 PF00291 Pyridoxal-phosphate dependent enzyme Y11_RS01640 PF00768 D-alanyl-D-alanine carboxypeptidase Y11_RS01640 PF07943 Penicillin-binding protein 5, C-terminal domain Y11_RS01645 PF02371 Transposase IS116/IS110/IS902 family Y11_RS01645 PF01548 Transposase Y11_RS01650 PF03313 Serine dehydratase alpha chain Y11_RS01650 PF03315 Serine dehydratase beta chain Y11_RS01660 PF08220 DeoR-like helix-turn-helix domain Y11_RS01660 PF00455 DeoR C terminal sensor domain Y11_RS01665 PF01791 DeoC/LacD family aldolase Y11_RS01670 PF01569 PAP2 superfamily Y11_RS01680 PF02080 TrkA-C domain Y11_RS01680 PF06826 Predicted Permease Membrane Region Y11_RS01685 PF00462 Glutaredoxin Y11_RS01690 PF07214 Protein of unknown function (DUF1418) Y11_RS01695 PF10722 Putative bacterial sensory transduction regulator Y11_RS01700 PF13416 Bacterial extracellular solute-binding protein Y11_RS01705 PF00005 ABC transporter Y11_RS01705 PF08402 TOBE domain Y11_RS01710 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS01715 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS01720 PF10767 Protein of unknown function (DUF2593) Y11_RS01725 PF05958 tRNA (Uracil-5-)-methyltransferase Y11_RS01730 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_RS01735 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS01740 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS01745 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_RS01750 PF00005 ABC transporter Y11_RS01755 PF12883 Protein of unknown function (DUF3828) Y11_RS01760 PF01370 NAD dependent epimerase/dehydratase family Y11_RS01765 PF11066 Protein of unknown function (DUF2867) Y11_RS01765 PF13460 NAD(P)H-binding Y11_RS01770 PF01212 Beta-eliminating lyase Y11_RS01775 PF04072 Leucine carboxyl methyltransferase Y11_RS01780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_RS01780 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_RS01780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_RS01785 PF00175 Oxidoreductase NAD-binding domain Y11_RS01785 PF00111 2Fe-2S iron-sulfur cluster binding domain Y11_RS01785 PF00970 Oxidoreductase FAD-binding domain Y11_RS01790 PF03063 Prismane/CO dehydrogenase family Y11_RS01795 PF03956 Lysine exporter LysO Y11_RS01800 PF11398 Protein of unknown function (DUF2813) Y11_RS01805 PF04393 Protein of unknown function (DUF535) Y11_RS01810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_RS01815 PF00005 ABC transporter Y11_RS01815 PF12704 MacB-like periplasmic core domain Y11_RS01815 PF02687 FtsX-like permease family Y11_RS01820 PF00313 'Cold-shock' DNA-binding domain Y11_RS01825 PF02617 ATP-dependent Clp protease adaptor protein ClpS Y11_RS01830 PF10431 C-terminal, D2-small domain, of ClpB protein Y11_RS01830 PF00004 ATPase family associated with various cellular activities (AAA) Y11_RS01830 PF07724 AAA domain (Cdc48 subfamily) Y11_RS01830 PF17871 AAA lid domain Y11_RS01830 PF02861 Clp amino terminal domain, pathogenicity island component Y11_RS01835 PF01176 Translation initiation factor 1A / IF-1 Y11_RS01840 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Y11_RS01845 PF00664 ABC transporter transmembrane region Y11_RS01845 PF00005 ABC transporter Y11_RS01850 PF00664 ABC transporter transmembrane region Y11_RS01850 PF00005 ABC transporter Y11_RS01855 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_RS01860 PF01037 Lrp/AsnC ligand binding domain Y11_RS01865 PF01580 FtsK/SpoIIIE family Y11_RS01865 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Y11_RS01865 PF17854 FtsK alpha domain Y11_RS01865 PF09397 Ftsk gamma domain Y11_RS01870 PF03548 Outer membrane lipoprotein carrier protein LolA Y11_RS01875 PF16193 AAA C-terminal domain Y11_RS01875 PF12002 MgsA AAA+ ATPase C terminal Y11_RS01875 PF00004 ATPase family associated with various cellular activities (AAA) Y11_RS01880 PF02403 Seryl-tRNA synthetase N-terminal domain Y11_RS01880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y11_RS01885 PF02371 Transposase IS116/IS110/IS902 family Y11_RS01885 PF01548 Transposase Y11_RS01890 PF00872 Transposase, Mutator family Y11_RS01895 PF07690 Major Facilitator Superfamily Y11_RS01900 PF04055 Radical SAM superfamily Y11_RS01905 PF02901 Pyruvate formate lyase-like Y11_RS01905 PF01228 Glycine radical Y11_RS01910 PF01226 Formate/nitrite transporter Y11_RS01915 PF02371 Transposase IS116/IS110/IS902 family Y11_RS01915 PF01548 Transposase Y11_RS01925 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Y11_RS01925 PF18381 YcaO cyclodehydratase C-terminal domain Y11_RS01935 PF04239 Protein of unknown function (DUF421) Y11_RS01940 PF00266 Aminotransferase class-V Y11_RS01945 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Y11_RS01950 PF02224 Cytidylate kinase Y11_RS01955 PF00575 S1 RNA binding domain Y11_RS01960 PF00216 Bacterial DNA-binding protein Y11_RS01965 PF00753 Metallo-beta-lactamase superfamily Y11_RS01965 PF03772 Competence protein Y11_RS01970 PF00005 ABC transporter Y11_RS01970 PF00664 ABC transporter transmembrane region Y11_RS01975 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Y11_RS01980 PF07063 Domain of unknown function (DUF1338) Y11_RS01985 PF00313 'Cold-shock' DNA-binding domain Y11_RS01990 PF00313 'Cold-shock' DNA-binding domain Y11_RS01995 PF03966 Trm112p-like protein Y11_RS02000 PF02348 Cytidylyltransferase Y11_RS02005 PF01636 Phosphotransferase enzyme family Y11_RS02010 PF02698 DUF218 domain Y11_RS02015 PF13847 Methyltransferase domain Y11_RS02020 PF03882 MukF winged-helix domain Y11_RS02020 PF17193 MukF C-terminal domain Y11_RS02020 PF17192 MukF middle domain Y11_RS02025 PF04288 MukE-like family Y11_RS02030 PF16330 MukB hinge domain Y11_RS02030 PF04310 MukB N-terminal Y11_RS02035 PF01471 Putative peptidoglycan binding domain Y11_RS02035 PF03734 L,D-transpeptidase catalytic domain Y11_RS02040 PF05951 Bacterial protein of unknown function (DUF882) Y11_RS02045 PF00753 Metallo-beta-lactamase superfamily Y11_RS02050 PF12792 CSS motif domain associated with EAL Y11_RS02050 PF00563 EAL domain Y11_RS02060 PF00155 Aminotransferase class I and II Y11_RS02065 PF00267 Gram-negative porin Y11_RS02070 PF00152 tRNA synthetases class II (D, K and N) Y11_RS02070 PF01336 OB-fold nucleic acid binding domain Y11_RS02075 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Y11_RS02075 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Y11_RS02080 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Y11_RS02080 PF11940 Domain of unknown function (DUF3458) Ig-like fold Y11_RS02080 PF01433 Peptidase family M1 domain Y11_RS02085 PF01180 Dihydroorotate dehydrogenase Y11_RS02090 PF07126 Cell-division protein ZapC Y11_RS02095 PF00111 2Fe-2S iron-sulfur cluster binding domain Y11_RS02095 PF03473 MOSC domain Y11_RS02095 PF03476 MOSC N-terminal beta barrel domain Y11_RS02100 PF01170 Putative RNA methylase family UPF0020 Y11_RS02100 PF02926 THUMP domain Y11_RS02100 PF10672 S-adenosylmethionine-dependent methyltransferase Y11_RS02105 PF00005 ABC transporter Y11_RS02105 PF16326 ABC transporter C-terminal domain Y11_RS02105 PF12848 ABC transporter Y11_RS02110 PF04403 Paraquat-inducible protein A Y11_RS02115 PF02470 MlaD protein Y11_RS02120 PF03886 ABC-type transport auxiliary lipoprotein component Y11_RS02125 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_RS02125 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_RS02135 PF07977 FabA-like domain Y11_RS02140 PF05362 Lon protease (S16) C-terminal proteolytic domain Y11_RS02140 PF13654 AAA domain Y11_RS02145 PF06303 MatP N-terminal domain Y11_RS02145 PF17414 MatP C-terminal ribbon-helix-helix domain Y11_RS02150 PF01389 OmpA-like transmembrane domain Y11_RS02150 PF00691 OmpA family Y11_RS02155 PF03846 Cell division inhibitor SulA Y11_RS02165 PF12805 FUSC-like inner membrane protein yccS Y11_RS02170 PF03733 Inner membrane component domain Y11_RS02175 PF12462 DNA helicase IV / RNA helicase N terminal Y11_RS02175 PF00580 UvrD/REP helicase N-terminal domain Y11_RS02175 PF13361 UvrD-like helicase C-terminal domain Y11_RS02180 PF02142 MGS-like domain Y11_RS02185 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) Y11_RS02190 PF13380 CoA binding domain Y11_RS02195 PF08755 Hemimethylated DNA-binding protein YccV like Y11_RS02200 PF17785 PUA-like domain Y11_RS02200 PF10672 S-adenosylmethionine-dependent methyltransferase Y11_RS02215 PF00708 Acylphosphatase Y11_RS02220 PF04358 DsrC like protein Y11_RS02230 PF02335 Cytochrome c552 Y11_RS02235 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) Y11_RS02235 PF13435 Cytochrome c554 and c-prime Y11_RS02240 PF00037 4Fe-4S binding domain Y11_RS02240 PF13247 4Fe-4S dicluster domain Y11_RS02245 PF03916 Polysulphide reductase, NrfD Y11_RS02250 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Y11_RS02250 PF01578 Cytochrome C assembly protein Y11_RS02255 PF08534 Redoxin Y11_RS02260 PF03918 Cytochrome C biogenesis protein Y11_RS02270 PF00196 Bacterial regulatory proteins, luxR family Y11_RS02270 PF03472 Autoinducer binding domain Y11_RS02275 PF00765 Autoinducer synthase Y11_RS02285 PF00999 Sodium/hydrogen exchanger family Y11_RS02285 PF03471 Transporter associated domain Y11_RS02285 PF02080 TrkA-C domain Y11_RS02290 PF01548 Transposase Y11_RS02290 PF02371 Transposase IS116/IS110/IS902 family Y11_RS02300 PF01757 Acyltransferase family Y11_RS02305 PF04349 Periplasmic glucan biosynthesis protein, MdoG Y11_RS02310 PF00535 Glycosyl transferase family 2 Y11_RS02315 PF02371 Transposase IS116/IS110/IS902 family Y11_RS02315 PF01548 Transposase Y11_RS02320 PF00854 POT family Y11_RS02330 PF07681 DoxX Y11_RS02335 PF18807 Tripartite Tc toxins repeat Y11_RS02335 PF05785 Rho-activating domain of cytotoxic necrotizing factor Y11_RS02340 PF03279 Bacterial lipid A biosynthesis acyltransferase Y11_RS02345 PF00196 Bacterial regulatory proteins, luxR family Y11_RS02345 PF00072 Response regulator receiver domain Y11_RS02350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS02350 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS02355 PF13247 4Fe-4S dicluster domain Y11_RS02360 PF03916 Polysulphide reductase, NrfD Y11_RS02365 PF01568 Molydopterin dinucleotide binding domain Y11_RS02365 PF00384 Molybdopterin oxidoreductase Y11_RS02365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS02375 PF00581 Rhodanese-like domain Y11_RS02375 PF12368 Rhodanase C-terminal Y11_RS02375 PF17773 UPF0176 acylphosphatase like domain Y11_RS02380 PF01594 AI-2E family transporter Y11_RS02385 PF00196 Bacterial regulatory proteins, luxR family Y11_RS02390 PF01266 FAD dependent oxidoreductase Y11_RS02395 PF13991 BssS protein family Y11_RS02400 PF06183 DinI-like family Y11_RS02405 PF01979 Amidohydrolase family Y11_RS02410 PF03992 Antibiotic biosynthesis monooxygenase Y11_RS02415 PF12111 Polyribonucleotide phosphorylase C terminal Y11_RS02415 PF00575 S1 RNA binding domain Y11_RS02415 PF00575 S1 RNA binding domain Y11_RS02415 PF12111 Polyribonucleotide phosphorylase C terminal Y11_RS02415 PF10150 Ribonuclease E/G family Y11_RS02415 PF10150 Ribonuclease E/G family Y11_RS02420 PF00849 RNA pseudouridylate synthase Y11_RS02420 PF01479 S4 domain Y11_RS02425 PF02545 Maf-like protein Y11_RS02430 PF02620 Large ribosomal RNA subunit accumulation protein YceD Y11_RS02435 PF01783 Ribosomal L32p protein family Y11_RS02440 PF02504 Fatty acid synthesis protein Y11_RS02445 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y11_RS02445 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y11_RS02450 PF00698 Acyl transferase domain Y11_RS02460 PF00550 Phosphopantetheine attachment site Y11_RS02465 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_RS02465 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_RS02470 PF01063 Amino-transferase class IV Y11_RS02475 PF02618 YceG-like family Y11_RS02480 PF02223 Thymidylate kinase Y11_RS02485 PF09115 DNA polymerase III, delta subunit, C terminal Y11_RS02490 PF01026 TatD related DNase Y11_RS02495 PF02378 Phosphotransferase system, EIIC Y11_RS02495 PF00367 phosphotransferase system, EIIB Y11_RS02505 PF00664 ABC transporter transmembrane region Y11_RS02505 PF03412 Peptidase C39 family Y11_RS02505 PF00005 ABC transporter Y11_RS02515 PF04055 Radical SAM superfamily Y11_RS02515 PF13186 Iron-sulfur cluster-binding domain Y11_RS02520 PF12793 Sugar transport-related sRNA regulator N-term Y11_RS02520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_RS02525 PF08501 Shikimate dehydrogenase substrate binding domain Y11_RS02530 PF01230 HIT domain Y11_RS02535 PF07233 Protein of unknown function (DUF1425) Y11_RS02540 PF13036 Peptidoglycan-synthase activator LpoB Y11_RS02540 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Y11_RS02545 PF01636 Phosphotransferase enzyme family Y11_RS02550 PF00933 Glycosyl hydrolase family 3 N terminal domain Y11_RS02555 PF05728 Uncharacterised protein family (UPF0227) Y11_RS02560 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_RS02565 PF05433 Glycine zipper 2TM domain Y11_RS02570 PF17757 UvrB interaction domain Y11_RS02570 PF00271 Helicase conserved C-terminal domain Y11_RS02570 PF02559 CarD-like/TRCF domain Y11_RS02570 PF00270 DEAD/DEAH box helicase Y11_RS02570 PF03461 TRCF domain Y11_RS02575 PF02687 FtsX-like permease family Y11_RS02575 PF12704 MacB-like periplasmic core domain Y11_RS02580 PF00005 ABC transporter Y11_RS02585 PF12704 MacB-like periplasmic core domain Y11_RS02585 PF02687 FtsX-like permease family Y11_RS02590 PF00480 ROK family Y11_RS02595 PF02146 Sir2 family Y11_RS02600 PF01546 Peptidase family M20/M25/M40 Y11_RS02600 PF07687 Peptidase dimerisation domain Y11_RS02605 PF08007 Cupin superfamily protein Y11_RS02610 PF08918 PhoQ Sensor Y11_RS02610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS02615 PF00486 Transcriptional regulatory protein, C terminal Y11_RS02615 PF00072 Response regulator receiver domain Y11_RS02625 PF08328 Adenylosuccinate lyase C-terminal Y11_RS02625 PF00206 Lyase Y11_RS02630 PF04356 Protein of unknown function (DUF489) Y11_RS02640 PF00293 NUDIX domain Y11_RS02645 PF00849 RNA pseudouridylate synthase Y11_RS02650 PF00180 Isocitrate/isopropylmalate dehydrogenase Y11_RS02690 PF00180 Isocitrate/isopropylmalate dehydrogenase Y11_RS02705 PF01306 LacY proton/sugar symporter Y11_RS02710 PF00251 Glycosyl hydrolases family 32 N-terminal domain Y11_RS02710 PF08244 Glycosyl hydrolases family 32 C terminal Y11_RS02715 PF00356 Bacterial regulatory proteins, lacI family Y11_RS02715 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_RS02725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_RS02725 PF08447 PAS fold Y11_RS02730 PF11799 impB/mucB/samB family C-terminal domain Y11_RS02730 PF00817 impB/mucB/samB family Y11_RS02730 PF13438 Domain of unknown function (DUF4113) Y11_RS02735 PF00717 Peptidase S24-like Y11_RS02745 PF01053 Cys/Met metabolism PLP-dependent enzyme Y11_RS02750 PF05368 NmrA-like family Y11_RS02755 PF01638 HxlR-like helix-turn-helix Y11_RS02780 PF07007 Lysozyme inhibitor LprI Y11_RS02785 PF06411 HdeA/HdeB family Y11_RS02795 PF00563 EAL domain Y11_RS02795 PF01590 GAF domain Y11_RS02795 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS02795 PF00360 Phytochrome region Y11_RS02805 PF03372 Endonuclease/Exonuclease/phosphatase family Y11_RS02815 PF00664 ABC transporter transmembrane region Y11_RS02815 PF00005 ABC transporter Y11_RS02825 PF13520 Amino acid permease Y11_RS02835 PF12833 Helix-turn-helix domain Y11_RS02845 PF10964 Protein of unknown function (DUF2766) Y11_RS02850 PF13996 YobH-like protein Y11_RS02855 PF13974 YebO-like protein Y11_RS02870 PF00324 Amino acid permease Y11_RS02875 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP Y11_RS02880 PF10736 Protein of unknown function (DUF2627) Y11_RS02885 PF00313 'Cold-shock' DNA-binding domain Y11_RS02890 PF02578 Multi-copper polyphenol oxidoreductase laccase Y11_RS02900 PF13847 Methyltransferase domain Y11_RS02910 PF13426 PAS domain Y11_RS02910 PF08448 PAS fold Y11_RS02910 PF08447 PAS fold Y11_RS02910 PF05231 MASE1 Y11_RS02910 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS02910 PF00563 EAL domain Y11_RS02915 PF07715 TonB-dependent Receptor Plug Domain Y11_RS02915 PF00593 TonB dependent receptor Y11_RS02920 PF02659 Putative manganese efflux pump Y11_RS02925 PF06173 Protein of unknown function (DUF986) Y11_RS02930 PF03613 PTS system mannose/fructose/sorbose family IID component Y11_RS02935 PF03609 PTS system sorbose-specific iic component Y11_RS02940 PF03610 PTS system fructose IIA component Y11_RS02940 PF03830 PTS system sorbose subfamily IIB component Y11_RS02945 PF03741 Integral membrane protein TerC family Y11_RS02945 PF03471 Transporter associated domain Y11_RS02950 PF03315 Serine dehydratase beta chain Y11_RS02950 PF03313 Serine dehydratase alpha chain Y11_RS02955 PF00293 NUDIX domain Y11_RS02960 PF00425 chorismate binding enzyme Y11_RS02960 PF04715 Anthranilate synthase component I, N terminal region Y11_RS02965 PF03701 Uncharacterised protein family (UPF0181) Y11_RS02970 PF02222 ATP-grasp domain Y11_RS02975 PF03880 DbpA RNA binding domain Y11_RS02975 PF00270 DEAD/DEAH box helicase Y11_RS02975 PF00271 Helicase conserved C-terminal domain Y11_RS02980 PF07130 YebG protein Y11_RS02985 PF04266 ASCH domain Y11_RS02990 PF13995 YebF-like protein Y11_RS02995 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Y11_RS02995 PF00326 Prolyl oligopeptidase family Y11_RS03000 PF00929 Exonuclease Y11_RS03005 PF00561 alpha/beta hydrolase fold Y11_RS03010 PF06440 DNA polymerase III, theta subunit Y11_RS03015 PF00210 Ferritin-like domain Y11_RS03020 PF04234 CopC domain Y11_RS03025 PF05425 Copper resistance protein D Y11_RS03030 PF10709 Protein of unknown function (DUF2511) Y11_RS03035 PF00589 Phage integrase family Y11_RS03035 PF02899 Phage integrase, N-terminal SAM-like domain Y11_RS03085 PF08242 Methyltransferase domain Y11_RS03090 PF00872 Transposase, Mutator family Y11_RS03105 PF07690 Major Facilitator Superfamily Y11_RS03120 PF00324 Amino acid permease Y11_RS03125 PF03390 2-hydroxycarboxylate transporter family Y11_RS03130 PF00072 Response regulator receiver domain Y11_RS03135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS03135 PF00989 PAS fold Y11_RS03135 PF17203 Single cache domain 3 Y11_RS03135 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Y11_RS03140 PF08220 DeoR-like helix-turn-helix domain Y11_RS03140 PF00455 DeoR C terminal sensor domain Y11_RS03145 PF17042 Nucleotide-binding C-terminal domain Y11_RS03145 PF07005 Sugar-binding N-terminal domain Y11_RS03155 PF01261 Xylose isomerase-like TIM barrel Y11_RS03160 PF04960 Glutaminase Y11_RS03175 PF03239 Iron permease FTR1 family Y11_RS03180 PF10634 Fe2+ transport protein Y11_RS03200 PF02687 FtsX-like permease family Y11_RS03200 PF12704 MacB-like periplasmic core domain Y11_RS03200 PF00005 ABC transporter Y11_RS03205 PF00578 AhpC/TSA family Y11_RS03215 PF09313 Domain of unknown function (DUF1971) Y11_RS03215 PF03848 Tellurite resistance protein TehB Y11_RS03220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS03220 PF03466 LysR substrate binding domain Y11_RS03225 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y11_RS03225 PF02272 DHHA1 domain Y11_RS03225 PF01411 tRNA synthetases class II (A) Y11_RS03230 PF06276 Ferric iron reductase FhuF-like transporter Y11_RS03230 PF11575 FhuF 2Fe-2S C-terminal domain Y11_RS03235 PF00557 Metallopeptidase family M24 Y11_RS03245 PF14883 Hypothetical glycosyl hydrolase family 13 Y11_RS03245 PF01522 Polysaccharide deacetylase Y11_RS03250 PF00535 Glycosyl transferase family 2 Y11_RS03255 PF13994 PgaD-like protein Y11_RS03270 PF02562 PhoH-like protein Y11_RS03280 PF00750 tRNA synthetases class I (R) Y11_RS03280 PF03485 Arginyl tRNA synthetase N terminal domain Y11_RS03280 PF05746 DALR anticodon binding domain Y11_RS03285 PF06185 YecM protein Y11_RS03290 PF03932 CutC family Y11_RS03310 PF00924 Mechanosensitive ion channel Y11_RS03315 PF02798 Glutathione S-transferase, N-terminal domain Y11_RS03315 PF14834 Glutathione S-transferase, C-terminal domain Y11_RS03335 PF07351 Protein of unknown function (DUF1480) Y11_RS03340 PF08447 PAS fold Y11_RS03340 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS03340 PF00563 EAL domain Y11_RS03340 PF08448 PAS fold Y11_RS03375 PF07690 Major Facilitator Superfamily Y11_RS03380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS03380 PF03466 LysR substrate binding domain Y11_RS03385 PF02470 MlaD protein Y11_RS03390 PF04403 Paraquat-inducible protein A Y11_RS03395 PF13185 GAF domain Y11_RS03400 PF04352 ProQ/FINO family Y11_RS03400 PF17516 ProQ C-terminal domain Y11_RS03405 PF00595 PDZ domain Y11_RS03405 PF17804 Tail specific protease N-terminal domain Y11_RS03405 PF11818 C-terminal domain of tail specific protease (DUF3340) Y11_RS03405 PF03572 Peptidase family S41 Y11_RS03410 PF01435 Peptidase family M48 Y11_RS03415 PF07690 Major Facilitator Superfamily Y11_RS03420 PF14583 Oligogalacturonate lyase Y11_RS03425 PF01614 Bacterial transcriptional regulator Y11_RS03425 PF09339 IclR helix-turn-helix domain Y11_RS03430 PF01510 N-acetylmuramoyl-L-alanine amidase Y11_RS03445 PF00375 Sodium:dicarboxylate symporter family Y11_RS03450 PF04307 LexA-binding, inner membrane-associated putative hydrolase Y11_RS03460 PF06178 Oligogalacturonate-specific porin protein (KdgM) Y11_RS03465 PF01547 Bacterial extracellular solute-binding protein Y11_RS03470 PF00005 ABC transporter Y11_RS03470 PF17912 MalK OB fold domain Y11_RS03470 PF03459 TOBE domain Y11_RS03475 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS03480 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS03485 PF06917 Periplasmic pectate lyase Y11_RS03495 PF04962 KduI/IolB family Y11_RS03500 PF07883 Cupin domain Y11_RS03505 PF13419 Haloacid dehalogenase-like hydrolase Y11_RS03510 PF14002 YniB-like protein Y11_RS03515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS03515 PF03466 LysR substrate binding domain Y11_RS03520 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Y11_RS03520 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Y11_RS03525 PF00378 Enoyl-CoA hydratase/isomerase Y11_RS03535 PF02310 B12 binding domain Y11_RS03535 PF01642 Methylmalonyl-CoA mutase Y11_RS03540 PF03881 Fructosamine kinase Y11_RS03545 PF00950 ABC 3 transport family Y11_RS03550 PF00950 ABC 3 transport family Y11_RS03555 PF00005 ABC transporter Y11_RS03560 PF01297 Zinc-uptake complex component A periplasmic Y11_RS03565 PF01464 Transglycosylase SLT domain Y11_RS03570 PF01914 MarC family integral membrane protein Y11_RS03595 PF04474 Protein of unknown function (DUF554) Y11_RS03600 PF13619 KTSC domain Y11_RS03605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y11_RS03605 PF03129 Anticodon binding domain Y11_RS03605 PF02824 TGS domain Y11_RS03605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y11_RS03610 PF00707 Translation initiation factor IF-3, C-terminal domain Y11_RS03610 PF05198 Translation initiation factor IF-3, N-terminal domain Y11_RS03615 PF01632 Ribosomal protein L35 Y11_RS03620 PF00453 Ribosomal protein L20 Y11_RS03625 PF01409 tRNA synthetases class II core domain (F) Y11_RS03625 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Y11_RS03630 PF03147 Ferredoxin-fold anticodon binding domain Y11_RS03630 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Y11_RS03630 PF03483 B3/4 domain Y11_RS03630 PF01588 Putative tRNA binding domain Y11_RS03630 PF03484 tRNA synthetase B5 domain Y11_RS03635 PF00216 Bacterial DNA-binding protein Y11_RS03640 PF05154 TM2 domain Y11_RS03650 PF01032 FecCD transport family Y11_RS03655 PF00255 Glutathione peroxidase Y11_RS03660 PF00005 ABC transporter Y11_RS03665 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Y11_RS03670 PF00535 Glycosyl transferase family 2 Y11_RS03675 PF00551 Formyl transferase Y11_RS03675 PF02911 Formyl transferase, C-terminal domain Y11_RS03675 PF01370 NAD dependent epimerase/dehydratase family Y11_RS03680 PF01522 Polysaccharide deacetylase Y11_RS03685 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Y11_RS03690 PF00892 EamA-like transporter family Y11_RS03700 PF00877 NlpC/P60 family Y11_RS03705 PF03099 Biotin/lipoate A/B protein ligase family Y11_RS03705 PF10437 Bacterial lipoate protein ligase C-terminus Y11_RS03710 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Y11_RS03715 PF01497 Periplasmic binding protein Y11_RS03720 PF05171 Haemin-degrading HemS.ChuX domain Y11_RS03725 PF07715 TonB-dependent Receptor Plug Domain Y11_RS03725 PF00593 TonB dependent receptor Y11_RS03730 PF10636 Hemin uptake protein hemP Y11_RS03735 PF00793 DAHP synthetase I family Y11_RS03740 PF03618 Kinase/pyrophosphorylase Y11_RS03745 PF00391 PEP-utilising enzyme, mobile domain Y11_RS03745 PF02896 PEP-utilising enzyme, TIM barrel domain Y11_RS03745 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Y11_RS03750 PF01594 AI-2E family transporter Y11_RS03755 PF02913 FAD linked oxidases, C-terminal domain Y11_RS03755 PF13183 4Fe-4S dicluster domain Y11_RS03755 PF01565 FAD binding domain Y11_RS03760 PF03061 Thioesterase superfamily Y11_RS03770 PF01521 Iron-sulphur cluster biosynthesis Y11_RS03775 PF01458 Uncharacterized protein family (UPF0051) Y11_RS03780 PF00005 ABC transporter Y11_RS03785 PF01458 Uncharacterized protein family (UPF0051) Y11_RS03790 PF00266 Aminotransferase class-V Y11_RS03795 PF02657 Fe-S metabolism associated domain Y11_RS03800 PF17969 L,D-transpeptidase C-terminal domain Y11_RS03800 PF01476 LysM domain Y11_RS03800 PF03734 L,D-transpeptidase catalytic domain Y11_RS03805 PF04728 Lipoprotein leucine-zipper Y11_RS03810 PF02887 Pyruvate kinase, alpha/beta domain Y11_RS03810 PF00224 Pyruvate kinase, barrel domain Y11_RS03825 PF01554 MatE Y11_RS03830 PF00677 Lumazine binding domain Y11_RS03840 PF07690 Major Facilitator Superfamily Y11_RS03845 PF03466 LysR substrate binding domain Y11_RS03845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS03850 PF00356 Bacterial regulatory proteins, lacI family Y11_RS03855 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Y11_RS03855 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Y11_RS03860 PF00877 NlpC/P60 family Y11_RS03865 PF00462 Glutaredoxin Y11_RS03870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y11_RS03875 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y11_RS03880 PF00440 Bacterial regulatory proteins, tetR family Y11_RS03880 PF16925 Tetracyclin repressor-like, C-terminal domain Y11_RS03885 PF08019 Phosphoethanolamine transferase EptA/EptB Y11_RS03885 PF00884 Sulfatase Y11_RS03890 PF06945 Protein of unknown function (DUF1289) Y11_RS03895 PF00248 Aldo/keto reductase family Y11_RS03900 PF04632 Fusaric acid resistance protein family Y11_RS03905 PF00529 HlyD membrane-fusion protein of T1SS Y11_RS03905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_RS03910 PF07869 Protein of unknown function (DUF1656) Y11_RS03915 PF01047 MarR family Y11_RS03920 PF05433 Glycine zipper 2TM domain Y11_RS03925 PF03702 Anhydro-N-acetylmuramic acid kinase Y11_RS03930 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme Y11_RS03935 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Y11_RS03935 PF01243 Pyridoxamine 5'-phosphate oxidase Y11_RS03940 PF01479 S4 domain Y11_RS03940 PF00579 tRNA synthetases class I (W and Y) Y11_RS03945 PF08543 Phosphomethylpyrimidine kinase Y11_RS03950 PF00043 Glutathione S-transferase, C-terminal domain Y11_RS03950 PF02798 Glutathione S-transferase, N-terminal domain Y11_RS03955 PF11656 YjbD family (DUF3811) Y11_RS03960 PF04893 Yip1 domain Y11_RS03970 PF00854 POT family Y11_RS03975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS03975 PF03466 LysR substrate binding domain Y11_RS03990 PF00005 ABC transporter Y11_RS03995 PF00005 ABC transporter Y11_RS03995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_RS04000 PF12911 N-terminal TM domain of oligopeptide transport permease C Y11_RS04000 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS04005 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS04010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_RS04015 PF02371 Transposase IS116/IS110/IS902 family Y11_RS04015 PF01548 Transposase Y11_RS04025 PF02917 Pertussis toxin, subunit 1 Y11_RS04035 PF00158 Sigma-54 interaction domain Y11_RS04035 PF02954 Bacterial regulatory protein, Fis family Y11_RS04040 PF04012 PspA/IM30 family Y11_RS04045 PF06667 Phage shock protein B Y11_RS04050 PF04024 PspC domain Y11_RS04060 PF04317 YcjX-like family, DUF463 Y11_RS04065 PF05128 Domain of unknown function (DUF697) Y11_RS04070 PF08808 RES domain Y11_RS04075 PF18024 Helix-turn-helix domain Y11_RS04075 PF00158 Sigma-54 interaction domain Y11_RS04080 PF08534 Redoxin Y11_RS04085 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Y11_RS04085 PF13378 Enolase C-terminal domain-like Y11_RS04090 PF00246 Zinc carboxypeptidase Y11_RS04095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_RS04100 PF01544 CorA-like Mg2+ transporter protein Y11_RS04105 PF01171 PP-loop family Y11_RS04115 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Y11_RS04115 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Y11_RS04115 PF10371 Domain of unknown function Y11_RS04115 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_RS04115 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Y11_RS04120 PF00893 Small Multidrug Resistance protein Y11_RS04125 PF02308 MgtC family Y11_RS04130 PF03891 Domain of unknown function (DUF333) Y11_RS04135 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y11_RS04135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_RS04140 PF11739 Dicarboxylate transport Y11_RS04145 PF13617 YnbE-like lipoprotein Y11_RS04150 PF07027 Protein of unknown function (DUF1318) Y11_RS04155 PF02525 Flavodoxin-like fold Y11_RS04160 PF00270 DEAD/DEAH box helicase Y11_RS04160 PF11898 Domain of unknown function (DUF3418) Y11_RS04160 PF04408 Helicase associated domain (HA2) Y11_RS04160 PF00271 Helicase conserved C-terminal domain Y11_RS04160 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Y11_RS04175 PF00089 Trypsin Y11_RS04185 PF02074 Carboxypeptidase Taq (M32) metallopeptidase Y11_RS04190 PF00672 HAMP domain Y11_RS04190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS04190 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS04195 PF00486 Transcriptional regulatory protein, C terminal Y11_RS04195 PF00072 Response regulator receiver domain Y11_RS04205 PF13520 Amino acid permease Y11_RS04210 PF07338 Protein of unknown function (DUF1471) Y11_RS04220 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Y11_RS04220 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Y11_RS04220 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Y11_RS04225 PF02233 NAD(P) transhydrogenase beta subunit Y11_RS04230 PF00582 Universal stress protein family Y11_RS04235 PF13545 Crp-like helix-turn-helix domain Y11_RS04235 PF00027 Cyclic nucleotide-binding domain Y11_RS04240 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y11_RS04240 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Y11_RS04255 PF06445 GyrI-like small molecule binding domain Y11_RS04265 PF00245 Alkaline phosphatase Y11_RS04270 PF00294 pfkB family carbohydrate kinase Y11_RS04285 PF13419 Haloacid dehalogenase-like hydrolase Y11_RS04290 PF01842 ACT domain Y11_RS04295 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_RS04295 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_RS04295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_RS04305 PF01510 N-acetylmuramoyl-L-alanine amidase Y11_RS04345 PF00459 Inositol monophosphatase family Y11_RS04350 PF00356 Bacterial regulatory proteins, lacI family Y11_RS04360 PF02796 Helix-turn-helix domain of resolvase Y11_RS04360 PF00239 Resolvase, N terminal domain Y11_RS04365 PF02661 Fic/DOC family Y11_RS04365 PF13784 Fic/DOC family N-terminal Y11_RS04375 PF03466 LysR substrate binding domain Y11_RS04375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS04390 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS04395 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS04400 PF01037 Lrp/AsnC ligand binding domain Y11_RS04425 PF02798 Glutathione S-transferase, N-terminal domain Y11_RS04440 PF05707 Zonular occludens toxin (Zot) Y11_RS04500 PF00263 Bacterial type II and III secretion system protein Y11_RS04500 PF03958 Bacterial type II/III secretion system short domain Y11_RS04535 PF07338 Protein of unknown function (DUF1471) Y11_RS04545 PF00106 short chain dehydrogenase Y11_RS04550 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Y11_RS04560 PF06932 Protein of unknown function (DUF1283) Y11_RS04565 PF06649 Protein of unknown function (DUF1161) Y11_RS04575 PF00654 Voltage gated chloride channel Y11_RS04585 PF00480 ROK family Y11_RS04590 PF03466 LysR substrate binding domain Y11_RS04590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS04595 PF07690 Major Facilitator Superfamily Y11_RS04610 PF05472 DNA replication terminus site-binding protein (Ter protein) Y11_RS04620 PF01548 Transposase Y11_RS04620 PF02371 Transposase IS116/IS110/IS902 family Y11_RS04625 PF10415 Fumarase C C-terminus Y11_RS04625 PF00206 Lyase Y11_RS04630 PF01238 Phosphomannose isomerase type I Y11_RS04635 PF06097 Bacterial protein of unknown function (DUF945) Y11_RS04640 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_RS04645 PF00356 Bacterial regulatory proteins, lacI family Y11_RS04645 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_RS04650 PF00367 phosphotransferase system, EIIB Y11_RS04650 PF02378 Phosphotransferase system, EIIC Y11_RS04655 PF00155 Aminotransferase class I and II Y11_RS04660 PF00962 Adenosine/AMP deaminase Y11_RS04665 PF13593 SBF-like CPA transporter family (DUF4137) Y11_RS04670 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y11_RS04670 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y11_RS04675 PF12833 Helix-turn-helix domain Y11_RS04675 PF02311 AraC-like ligand binding domain Y11_RS04685 PF00005 ABC transporter Y11_RS04690 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_RS04695 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y11_RS04700 PF11762 L-arabinose isomerase C-terminal domain Y11_RS04700 PF02610 L-arabinose isomerase Y11_RS04705 PF02463 RecF/RecN/SMC N terminal domain Y11_RS04710 PF00005 ABC transporter Y11_RS04710 PF03412 Peptidase C39 family Y11_RS04710 PF00664 ABC transporter transmembrane region Y11_RS04725 PF00664 ABC transporter transmembrane region Y11_RS04725 PF00005 ABC transporter Y11_RS04725 PF03412 Peptidase C39 family Y11_RS04730 PF01268 Formate--tetrahydrofolate ligase Y11_RS04735 PF10754 Protein of unknown function (DUF2569) Y11_RS04740 PF02508 Rnf-Nqr subunit, membrane protein Y11_RS04745 PF04060 Putative Fe-S cluster Y11_RS04750 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y11_RS04750 PF13237 4Fe-4S dicluster domain Y11_RS04750 PF13375 RnfC Barrel sandwich hybrid domain Y11_RS04750 PF10531 SLBB domain Y11_RS04760 PF06445 GyrI-like small molecule binding domain Y11_RS04760 PF12833 Helix-turn-helix domain Y11_RS04765 PF03116 NQR2, RnfD, RnfE family Y11_RS04770 PF04205 FMN-binding domain Y11_RS04775 PF02508 Rnf-Nqr subunit, membrane protein Y11_RS04780 PF00730 HhH-GPD superfamily base excision DNA repair protein Y11_RS04780 PF10576 Iron-sulfur binding domain of endonuclease III Y11_RS04780 PF00633 Helix-hairpin-helix motif Y11_RS04795 PF02371 Transposase IS116/IS110/IS902 family Y11_RS04795 PF01548 Transposase Y11_RS04805 PF00384 Molybdopterin oxidoreductase Y11_RS04810 PF00773 RNB domain Y11_RS04810 PF00575 S1 RNA binding domain Y11_RS04810 PF08206 Ribonuclease B OB domain Y11_RS04815 PF02554 Carbon starvation protein CstA Y11_RS04815 PF13722 5TM C-terminal transporter carbon starvation CstA Y11_RS04820 PF04328 Selenoprotein, putative Y11_RS04825 PF00923 Transaldolase/Fructose-6-phosphate aldolase Y11_RS04830 PF08220 DeoR-like helix-turn-helix domain Y11_RS04830 PF00455 DeoR C terminal sensor domain Y11_RS04840 PF00596 Class II Aldolase and Adducin N-terminal domain Y11_RS04845 PF05433 Glycine zipper 2TM domain Y11_RS04855 PF01253 Translation initiation factor SUI1 Y11_RS04860 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Y11_RS04865 PF07338 Protein of unknown function (DUF1471) Y11_RS04875 PF07883 Cupin domain Y11_RS04875 PF01381 Helix-turn-helix Y11_RS04885 PF18073 Rubredoxin metal binding domain Y11_RS04890 PF06305 Lipopolysaccharide assembly protein A domain Y11_RS04895 PF01569 PAP2 superfamily Y11_RS04900 PF00925 GTP cyclohydrolase II Y11_RS04910 PF00330 Aconitase family (aconitate hydratase) Y11_RS04910 PF00694 Aconitase C-terminal domain Y11_RS04920 PF03466 LysR substrate binding domain Y11_RS04920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS04925 PF01131 DNA topoisomerase Y11_RS04925 PF08272 Topoisomerase I zinc-ribbon-like Y11_RS04925 PF01396 Topoisomerase DNA binding C4 zinc finger Y11_RS04925 PF01751 Toprim domain Y11_RS04930 PF10692 Protein of unknown function (DUF2498) Y11_RS04935 PF01343 Peptidase family S49 Y11_RS04935 PF08496 Peptidase family S49 N-terminal Y11_RS04940 PF00106 short chain dehydrogenase Y11_RS04945 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Y11_RS04945 PF12557 Cob(I)alamin adenosyltransferase N terminal Y11_RS04955 PF00849 RNA pseudouridylate synthase Y11_RS04955 PF01479 S4 domain Y11_RS04960 PF01300 Telomere recombination Y11_RS04965 PF02811 PHP domain Y11_RS04970 PF00425 chorismate binding enzyme Y11_RS04970 PF04715 Anthranilate synthase component I, N terminal region Y11_RS04975 PF00117 Glutamine amidotransferase class-I Y11_RS04980 PF00591 Glycosyl transferase family, a/b domain Y11_RS04980 PF02885 Glycosyl transferase family, helical bundle domain Y11_RS04985 PF00218 Indole-3-glycerol phosphate synthase Y11_RS04985 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Y11_RS04990 PF00291 Pyridoxal-phosphate dependent enzyme Y11_RS04995 PF00290 Tryptophan synthase alpha chain Y11_RS05005 PF03922 OmpW family Y11_RS05010 PF03692 Putative zinc- or iron-chelating domain Y11_RS05025 PF04279 Intracellular septation protein A Y11_RS05030 PF03061 Thioesterase superfamily Y11_RS05035 PF03544 Gram-negative bacterial TonB protein C-terminal Y11_RS05040 PF03795 YCII-related domain Y11_RS05055 PF13396 Phospholipase_D-nuclease N-terminal Y11_RS05055 PF13091 PLD-like domain Y11_RS05060 PF04269 Protein of unknown function, DUF440 Y11_RS05065 PF00005 ABC transporter Y11_RS05065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_RS05070 PF00005 ABC transporter Y11_RS05070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_RS05075 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS05075 PF12911 N-terminal TM domain of oligopeptide transport permease C Y11_RS05080 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS05085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_RS05090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_RS05095 PF01914 MarC family integral membrane protein Y11_RS05100 PF00171 Aldehyde dehydrogenase family Y11_RS05100 PF00465 Iron-containing alcohol dehydrogenase Y11_RS05105 PF00265 Thymidine kinase Y11_RS05115 PF00816 H-NS histone family Y11_RS05120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y11_RS05120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y11_RS05120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y11_RS05130 PF01734 Patatin-like phospholipase Y11_RS05140 PF02810 SEC-C motif Y11_RS05145 PF00551 Formyl transferase Y11_RS05145 PF01842 ACT domain Y11_RS05160 PF03372 Endonuclease/Exonuclease/phosphatase family Y11_RS05165 PF00293 NUDIX domain Y11_RS05170 PF07383 Protein of unknown function (DUF1496) Y11_RS05175 PF01751 Toprim domain Y11_RS05175 PF01131 DNA topoisomerase Y11_RS05180 PF00586 AIR synthase related protein, N-terminal domain Y11_RS05180 PF02769 AIR synthase related protein, C-terminal domain Y11_RS05185 PF00881 Nitroreductase family Y11_RS05190 PF01343 Peptidase family S49 Y11_RS05195 PF00710 Asparaginase, N-terminal Y11_RS05195 PF17763 Glutaminase/Asparaginase C-terminal domain Y11_RS05200 PF00857 Isochorismatase family Y11_RS05210 PF01548 Transposase Y11_RS05210 PF02371 Transposase IS116/IS110/IS902 family Y11_RS05215 PF07023 Protein of unknown function (DUF1315) Y11_RS05220 PF01641 SelR domain Y11_RS05225 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y11_RS05225 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y11_RS05230 PF01263 Aldose 1-epimerase Y11_RS05235 PF06629 MltA-interacting protein MipA Y11_RS05240 PF08298 PrkA AAA domain Y11_RS05240 PF06798 PrkA serine protein kinase C-terminal domain Y11_RS05245 PF04285 Protein of unknown function (DUF444) Y11_RS05260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS05260 PF03466 LysR substrate binding domain Y11_RS05265 PF05726 Pirin C-terminal cupin domain Y11_RS05265 PF02678 Pirin Y11_RS05270 PF13426 PAS domain Y11_RS05270 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS05270 PF00563 EAL domain Y11_RS05275 PF07690 Major Facilitator Superfamily Y11_RS05280 PF00842 Alanine racemase, C-terminal domain Y11_RS05280 PF01168 Alanine racemase, N-terminal domain Y11_RS05285 PF01266 FAD dependent oxidoreductase Y11_RS05290 PF04293 SpoVR like protein Y11_RS05295 PF07840 FadR C-terminal domain Y11_RS05295 PF00392 Bacterial regulatory proteins, gntR family Y11_RS05300 PF06450 Bacterial Na+/H+ antiporter B (NhaB) Y11_RS05305 PF02600 Disulfide bond formation protein DsbB Y11_RS05330 PF03692 Putative zinc- or iron-chelating domain Y11_RS05335 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y11_RS05340 PF13406 Transglycosylase SLT domain Y11_RS05345 PF05166 YcgL domain Y11_RS05355 PF05209 Septum formation inhibitor MinC, N-terminal domain Y11_RS05355 PF03775 Septum formation inhibitor MinC, C-terminal domain Y11_RS05360 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y11_RS05365 PF03776 Septum formation topological specificity factor MinE Y11_RS05370 PF01612 3'-5' exonuclease Y11_RS05370 PF00570 HRDC domain Y11_RS05375 PF00501 AMP-binding enzyme Y11_RS05375 PF13193 AMP-binding enzyme C-terminal domain Y11_RS05380 PF03843 Outer membrane lipoprotein Slp family Y11_RS05385 PF00814 Glycoprotease family Y11_RS05390 PF04851 Type III restriction enzyme, res subunit Y11_RS05390 PF13307 Helicase C-terminal domain Y11_RS05395 PF01042 Endoribonuclease L-PSP Y11_RS05400 PF00893 Small Multidrug Resistance protein Y11_RS05405 PF00893 Small Multidrug Resistance protein Y11_RS05410 PF01081 KDPG and KHG aldolase Y11_RS05415 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Y11_RS05415 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Y11_RS05420 PF01418 Helix-turn-helix domain, rpiR family Y11_RS05420 PF01380 SIS domain Y11_RS05425 PF02887 Pyruvate kinase, alpha/beta domain Y11_RS05425 PF00224 Pyruvate kinase, barrel domain Y11_RS05435 PF03279 Bacterial lipid A biosynthesis acyltransferase Y11_RS05440 PF01476 LysM domain Y11_RS05440 PF01551 Peptidase family M23 Y11_RS05440 PF08525 Opacity-associated protein A N-terminal motif Y11_RS05445 PF01297 Zinc-uptake complex component A periplasmic Y11_RS05450 PF00005 ABC transporter Y11_RS05455 PF00950 ABC 3 transport family Y11_RS05460 PF00854 POT family Y11_RS05465 PF05496 Holliday junction DNA helicase RuvB P-loop domain Y11_RS05465 PF05491 RuvB C-terminal winged helix domain Y11_RS05465 PF17864 RuvB AAA lid domain Y11_RS05470 PF01330 RuvA N terminal domain Y11_RS05470 PF07499 RuvA, C-terminal domain Y11_RS05475 PF02075 Crossover junction endodeoxyribonuclease RuvC Y11_RS05480 PF01709 Transcriptional regulator Y11_RS05485 PF00293 NUDIX domain Y11_RS05490 PF02938 GAD domain Y11_RS05490 PF01336 OB-fold nucleic acid binding domain Y11_RS05490 PF00152 tRNA synthetases class II (D, K and N) Y11_RS05500 PF00857 Isochorismatase family Y11_RS05505 PF01904 Protein of unknown function DUF72 Y11_RS05510 PF01124 MAPEG family Y11_RS05515 PF13649 Methyltransferase domain Y11_RS05520 PF08003 Protein of unknown function (DUF1698) Y11_RS05535 PF08220 DeoR-like helix-turn-helix domain Y11_RS05535 PF00455 DeoR C terminal sensor domain Y11_RS05540 PF08013 Tagatose 6 phosphate kinase Y11_RS05545 PF03830 PTS system sorbose subfamily IIB component Y11_RS05550 PF03609 PTS system sorbose-specific iic component Y11_RS05555 PF03613 PTS system mannose/fructose/sorbose family IID component Y11_RS05560 PF03610 PTS system fructose IIA component Y11_RS05565 PF01380 SIS domain Y11_RS05570 PF01116 Fructose-bisphosphate aldolase class-II Y11_RS05575 PF01551 Peptidase family M23 Y11_RS05575 PF01476 LysM domain Y11_RS05600 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Y11_RS05605 PF05962 HutD Y11_RS05610 PF01979 Amidohydrolase family Y11_RS05615 PF07702 UTRA domain Y11_RS05615 PF00392 Bacterial regulatory proteins, gntR family Y11_RS05620 PF01979 Amidohydrolase family Y11_RS05635 PF13333 Integrase core domain Y11_RS05635 PF00665 Integrase core domain Y11_RS05635 PF13276 HTH-like domain Y11_RS05640 PF00267 Gram-negative porin Y11_RS05645 PF01548 Transposase Y11_RS05645 PF02371 Transposase IS116/IS110/IS902 family Y11_RS05650 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Y11_RS05660 PF00171 Aldehyde dehydrogenase family Y11_RS05665 PF04958 Arginine N-succinyltransferase beta subunit Y11_RS05670 PF00202 Aminotransferase class-III Y11_RS05675 PF00392 Bacterial regulatory proteins, gntR family Y11_RS05675 PF00155 Aminotransferase class I and II Y11_RS05680 PF01654 Cytochrome bd terminal oxidase subunit I Y11_RS05685 PF02322 Cytochrome bd terminal oxidase subunit II Y11_RS05690 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Y11_RS05690 PF07730 Histidine kinase Y11_RS05690 PF00672 HAMP domain Y11_RS05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS05695 PF03466 LysR substrate binding domain Y11_RS05695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS05700 PF01548 Transposase Y11_RS05700 PF02371 Transposase IS116/IS110/IS902 family Y11_RS05705 PF07690 Major Facilitator Superfamily Y11_RS05715 PF01699 Sodium/calcium exchanger protein Y11_RS05720 PF03023 Lipid II flippase MurJ Y11_RS05725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y11_RS05730 PF04337 Protein of unknown function, DUF480 Y11_RS05735 PF13302 Acetyltransferase (GNAT) domain Y11_RS05750 PF07690 Major Facilitator Superfamily Y11_RS05755 PF07273 Protein of unknown function (DUF1439) Y11_RS05760 PF02613 Nitrate reductase delta subunit Y11_RS05765 PF02811 PHP domain Y11_RS05770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_RS05780 PF03009 Glycerophosphoryl diester phosphodiesterase family Y11_RS05790 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS05795 PF00916 Sulfate permease family Y11_RS05795 PF01740 STAS domain Y11_RS05800 PF00793 DAHP synthetase I family Y11_RS05805 PF13369 Transglutaminase-like superfamily Y11_RS05810 PF04247 Invasion gene expression up-regulator, SirB Y11_RS05815 PF17827 PrmC N-terminal domain Y11_RS05815 PF13847 Methyltransferase domain Y11_RS05820 PF03462 PCRF domain Y11_RS05820 PF00472 RF-1 domain Y11_RS05825 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Y11_RS05825 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Y11_RS05825 PF01488 Shikimate / quinate 5-dehydrogenase Y11_RS05830 PF03550 Outer membrane lipoprotein LolB Y11_RS05835 PF08544 GHMP kinases C terminal Y11_RS05835 PF00288 GHMP kinases N terminal domain Y11_RS05840 PF14572 Phosphoribosyl synthetase-associated domain Y11_RS05840 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Y11_RS05850 PF10762 Protein of unknown function (DUF2583) Y11_RS05855 PF01195 Peptidyl-tRNA hydrolase Y11_RS05865 PF01926 50S ribosome-binding GTPase Y11_RS05865 PF06071 Protein of unknown function (DUF933) Y11_RS05870 PF00144 Beta-lactamase Y11_RS05875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS05875 PF03466 LysR substrate binding domain Y11_RS05880 PF04391 Protein of unknown function (DUF533) Y11_RS05885 PF00561 alpha/beta hydrolase fold Y11_RS05890 PF00959 Phage lysozyme Y11_RS05900 PF10753 Toxin GhoT_OrtT Y11_RS05905 PF06530 Phage antitermination protein Q Y11_RS05920 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_RS05930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS05930 PF03466 LysR substrate binding domain Y11_RS05940 PF01527 Transposase Y11_RS06015 PF07484 Phage Tail Collar Domain Y11_RS06020 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Y11_RS06030 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ Y11_RS06035 PF04221 RelB antitoxin Y11_RS06055 PF04754 Putative transposase, YhgA-like Y11_RS06065 PF01695 IstB-like ATP binding protein Y11_RS06070 PF00665 Integrase core domain Y11_RS06075 PF00872 Transposase, Mutator family Y11_RS06080 PF00665 Integrase core domain Y11_RS06095 PF00589 Phage integrase family Y11_RS06095 PF02899 Phage integrase, N-terminal SAM-like domain Y11_RS06100 PF03120 NAD-dependent DNA ligase OB-fold domain Y11_RS06100 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Y11_RS06100 PF12826 Helix-hairpin-helix motif Y11_RS06100 PF00533 BRCA1 C Terminus (BRCT) domain Y11_RS06100 PF01653 NAD-dependent DNA ligase adenylation domain Y11_RS06105 PF16452 Bacteriophage CI repressor C-terminal domain Y11_RS06105 PF07022 Bacteriophage CI repressor helix-turn-helix domain Y11_RS06115 PF06892 Phage regulatory protein CII (CP76) Y11_RS06135 PF05840 Bacteriophage replication gene A protein (GPA) Y11_RS06315 PF01066 CDP-alcohol phosphatidyltransferase Y11_RS06320 PF02151 UvrB/uvrC motif Y11_RS06320 PF08459 UvrC Helix-hairpin-helix N-terminal Y11_RS06320 PF01541 GIY-YIG catalytic domain Y11_RS06325 PF00196 Bacterial regulatory proteins, luxR family Y11_RS06325 PF00072 Response regulator receiver domain Y11_RS06330 PF10769 Protein of unknown function (DUF2594) Y11_RS06335 PF06942 GlpM protein Y11_RS06345 PF00128 Alpha amylase, catalytic domain Y11_RS06345 PF02806 Alpha amylase, C-terminal all-beta domain Y11_RS06360 PF08241 Methyltransferase domain Y11_RS06370 PF01527 Transposase Y11_RS06375 PF00589 Phage integrase family Y11_RS06385 PF00324 Amino acid permease Y11_RS06390 PF00440 Bacterial regulatory proteins, tetR family Y11_RS06390 PF08362 YcdC-like protein, C-terminal region Y11_RS06395 PF00296 Luciferase-like monooxygenase Y11_RS06400 PF00857 Isochorismatase family Y11_RS06405 PF01042 Endoribonuclease L-PSP Y11_RS06410 PF12697 Alpha/beta hydrolase family Y11_RS06415 PF00881 Nitroreductase family Y11_RS06420 PF01613 Flavin reductase like domain Y11_RS06435 PF01344 Kelch motif Y11_RS06445 PF03358 NADPH-dependent FMN reductase Y11_RS06450 PF04261 Dyp-type peroxidase family Y11_RS06455 PF09375 Imelysin Y11_RS06455 PF13473 Cupredoxin-like domain Y11_RS06460 PF03239 Iron permease FTR1 family Y11_RS06470 PF05638 Type VI secretion system effector, Hcp Y11_RS06485 PF00474 Sodium:solute symporter family Y11_RS06490 PF01619 Proline dehydrogenase Y11_RS06490 PF00171 Aldehyde dehydrogenase family Y11_RS06490 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Y11_RS06490 PF14850 DNA-binding domain of Proline dehydrogenase Y11_RS06505 PF00005 ABC transporter Y11_RS06510 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS06515 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_RS06520 PF00291 Pyridoxal-phosphate dependent enzyme Y11_RS06525 PF02899 Phage integrase, N-terminal SAM-like domain Y11_RS06530 PF04539 Sigma-70 region 3 Y11_RS06530 PF04542 Sigma-70 region 2 Y11_RS06530 PF04545 Sigma-70, region 4 Y11_RS06540 PF00700 Bacterial flagellin C-terminal helical region Y11_RS06540 PF08884 Flagellin D3 domain Y11_RS06540 PF00669 Bacterial flagellin N-terminal helical region Y11_RS06545 PF00700 Bacterial flagellin C-terminal helical region Y11_RS06545 PF08884 Flagellin D3 domain Y11_RS06545 PF00669 Bacterial flagellin N-terminal helical region Y11_RS06550 PF00669 Bacterial flagellin N-terminal helical region Y11_RS06550 PF08884 Flagellin D3 domain Y11_RS06550 PF00700 Bacterial flagellin C-terminal helical region Y11_RS06555 PF02465 Flagellar hook-associated protein 2 N-terminus Y11_RS06555 PF07195 Flagellar hook-associated protein 2 C-terminus Y11_RS06555 PF07196 Flagellin hook IN motif Y11_RS06560 PF02561 Flagellar protein FliS Y11_RS06565 PF05400 Flagellar protein FliT Y11_RS06570 PF12833 Helix-turn-helix domain Y11_RS06575 PF01966 HD domain Y11_RS06580 PF00730 HhH-GPD superfamily base excision DNA repair protein Y11_RS06590 PF06183 DinI-like family Y11_RS06610 PF12167 Arm DNA-binding domain Y11_RS06610 PF00589 Phage integrase family Y11_RS06615 PF02049 Flagellar hook-basal body complex protein FliE Y11_RS06620 PF01514 Secretory protein of YscJ/FliF family Y11_RS06620 PF08345 Flagellar M-ring protein C-terminal Y11_RS06625 PF14841 FliG middle domain Y11_RS06625 PF01706 FliG C-terminal domain Y11_RS06625 PF14842 FliG N-terminal domain Y11_RS06630 PF02108 Flagellar assembly protein FliH Y11_RS06635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y11_RS06635 PF18269 T3SS EscN ATPase C-terminal domain Y11_RS06640 PF02050 Flagellar FliJ protein Y11_RS06645 PF02120 Flagellar hook-length control protein FliK Y11_RS06650 PF03748 Flagellar basal body-associated protein FliL Y11_RS06655 PF02154 Flagellar motor switch protein FliM Y11_RS06655 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y11_RS06660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y11_RS06660 PF16973 Flagellar motor switch protein FliN N-terminal Y11_RS06665 PF04347 Flagellar biosynthesis protein, FliO Y11_RS06670 PF00813 FliP family Y11_RS06675 PF01313 Bacterial export proteins, family 3 Y11_RS06680 PF01311 Bacterial export proteins, family 1 Y11_RS06685 PF00669 Bacterial flagellin N-terminal helical region Y11_RS06690 PF00460 Flagella basal body rod protein Y11_RS06690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_RS06695 PF10135 Rod binding protein Y11_RS06695 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Y11_RS06700 PF02119 Flagellar P-ring protein Y11_RS06705 PF02107 Flagellar L-ring protein Y11_RS06710 PF00460 Flagella basal body rod protein Y11_RS06710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_RS06715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_RS06715 PF00460 Flagella basal body rod protein Y11_RS06720 PF00460 Flagella basal body rod protein Y11_RS06720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_RS06720 PF07559 Flagellar basal body protein FlaE Y11_RS06725 PF13861 FlgD Tudor-like domain Y11_RS06725 PF13860 FlgD Ig-like domain Y11_RS06725 PF03963 Flagellar hook capping protein - N-terminal region Y11_RS06730 PF00460 Flagella basal body rod protein Y11_RS06730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_RS06735 PF00460 Flagella basal body rod protein Y11_RS06740 PF17656 FlgA N-terminal domain Y11_RS06740 PF13144 Chaperone for flagella basal body P-ring formation Y11_RS06745 PF04316 Anti-sigma-28 factor, FlgM Y11_RS06750 PF05130 FlgN protein Y11_RS06755 PF02369 Bacterial Ig-like domain (group 1) Y11_RS06755 PF07979 Intimin C-type lectin domain Y11_RS06755 PF11924 Inverse autotransporter, beta-domain Y11_RS06755 PF09134 Invasin, domain 3 Y11_RS06760 PF02371 Transposase IS116/IS110/IS902 family Y11_RS06760 PF01548 Transposase Y11_RS06765 PF06366 Flagellar protein FlhE Y11_RS06770 PF00771 FHIPEP family Y11_RS06775 PF01312 FlhB HrpN YscU SpaS Family Y11_RS06780 PF00082 Subtilase family Y11_RS06780 PF01483 Proprotein convertase P-domain Y11_RS06785 PF04344 Chemotaxis phosphatase, CheZ Y11_RS06790 PF00072 Response regulator receiver domain Y11_RS06795 PF01339 CheB methylesterase Y11_RS06795 PF00072 Response regulator receiver domain Y11_RS06800 PF03705 CheR methyltransferase, all-alpha domain Y11_RS06800 PF01739 CheR methyltransferase, SAM binding domain Y11_RS06805 PF00672 HAMP domain Y11_RS06805 PF02203 Tar ligand binding domain homologue Y11_RS06805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_RS06810 PF02203 Tar ligand binding domain homologue Y11_RS06810 PF00672 HAMP domain Y11_RS06810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_RS06815 PF01584 CheW-like domain Y11_RS06820 PF02895 Signal transducing histidine kinase, homodimeric domain Y11_RS06820 PF01627 Hpt domain Y11_RS06820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS06820 PF09078 CheY binding Y11_RS06820 PF01584 CheW-like domain Y11_RS06825 PF13677 Membrane MotB of proton-channel complex MotA/MotB Y11_RS06825 PF00691 OmpA family Y11_RS06830 PF01618 MotA/TolQ/ExbB proton channel family Y11_RS06835 PF05280 Flagellar transcriptional activator (FlhC) Y11_RS06840 PF05247 Flagellar transcriptional activator (FlhD) Y11_RS06845 PF00582 Universal stress protein family Y11_RS06850 PF00107 Zinc-binding dehydrogenase Y11_RS06850 PF16884 N-terminal domain of oxidoreductase Y11_RS06855 PF00690 Cation transporter/ATPase, N-terminus Y11_RS06855 PF00689 Cation transporting ATPase, C-terminus Y11_RS06860 PF02308 MgtC family Y11_RS06875 PF00672 HAMP domain Y11_RS06875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_RS06875 PF02203 Tar ligand binding domain homologue Y11_RS06880 PF10781 Dextransucrase DSRB Y11_RS06885 PF00313 'Cold-shock' DNA-binding domain Y11_RS06890 PF00356 Bacterial regulatory proteins, lacI family Y11_RS06895 PF00703 Glycosyl hydrolases family 2 Y11_RS06895 PF02929 Beta galactosidase small chain Y11_RS06895 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Y11_RS06895 PF16353 Domain of unknown function(DUF4981) Y11_RS06895 PF02837 Glycosyl hydrolases family 2, sugar binding domain Y11_RS06900 PF00872 Transposase, Mutator family Y11_RS06905 PF00550 Phosphopantetheine attachment site Y11_RS06905 PF08659 KR domain Y11_RS06905 PF14765 Polyketide synthase dehydratase Y11_RS06905 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_RS06905 PF08240 Alcohol dehydrogenase GroES-like domain Y11_RS06905 PF00107 Zinc-binding dehydrogenase Y11_RS06905 PF16197 Ketoacyl-synthetase C-terminal extension Y11_RS06905 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_RS06905 PF00698 Acyl transferase domain Y11_RS06910 PF10777 Inner membrane protein YlaC Y11_RS06925 PF14001 YdfZ protein Y11_RS06930 PF00328 Histidine phosphatase superfamily (branch 2) Y11_RS06935 PF00483 Nucleotidyl transferase Y11_RS06945 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_RS06950 PF00577 Outer membrane usher protein Y11_RS06950 PF13953 PapC C-terminal domain Y11_RS06950 PF13954 PapC N-terminal domain Y11_RS06970 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y11_RS06970 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y11_RS06975 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y11_RS06975 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y11_RS06985 PF06167 Glucose-regulated metallo-peptidase M90 Y11_RS06995 PF13356 Arm DNA-binding domain Y11_RS06995 PF00589 Phage integrase family Y11_RS07000 PF03466 LysR substrate binding domain Y11_RS07000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS07005 PF02811 PHP domain Y11_RS07010 PF01695 IstB-like ATP binding protein Y11_RS07015 PF00665 Integrase core domain Y11_RS07020 PF18818 Metallopeptidase superfamily domain Y11_RS07020 PF08401 Domain of unknown function (DUF1738) Y11_RS07065 PF00072 Response regulator receiver domain Y11_RS07065 PF00196 Bacterial regulatory proteins, luxR family Y11_RS07070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS07070 PF01627 Hpt domain Y11_RS07070 PF00072 Response regulator receiver domain Y11_RS07070 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_RS07070 PF00989 PAS fold Y11_RS07070 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS07080 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_RS07080 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_RS07085 PF13953 PapC C-terminal domain Y11_RS07085 PF00577 Outer membrane usher protein Y11_RS07085 PF13954 PapC N-terminal domain Y11_RS07095 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_RS07095 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_RS07110 PF00849 RNA pseudouridylate synthase Y11_RS07115 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) Y11_RS07120 PF00381 PTS HPr component phosphorylation site Y11_RS07120 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_RS07125 PF00083 Sugar (and other) transporter Y11_RS07135 PF01648 4'-phosphopantetheinyl transferase superfamily Y11_RS07135 PF17837 4'-phosphopantetheinyl transferase N-terminal domain Y11_RS07145 PF03480 Bacterial extracellular solute-binding protein, family 7 Y11_RS07155 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Y11_RS07160 PF00939 Sodium:sulfate symporter transmembrane region Y11_RS07165 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Y11_RS07170 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase Y11_RS07170 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Y11_RS07175 PF04223 Citrate lyase, alpha subunit (CitF) Y11_RS07180 PF03328 HpcH/HpaI aldolase/citrate lyase family Y11_RS07185 PF06857 Malonate decarboxylase delta subunit (MdcD) Y11_RS07190 PF08218 Citrate lyase ligase C-terminal domain Y11_RS07195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS07195 PF00989 PAS fold Y11_RS07195 PF17203 Single cache domain 3 Y11_RS07195 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Y11_RS07200 PF12431 Transcriptional regulator Y11_RS07200 PF00072 Response regulator receiver domain Y11_RS07205 PF00072 Response regulator receiver domain Y11_RS07205 PF00196 Bacterial regulatory proteins, luxR family Y11_RS07210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS07210 PF07730 Histidine kinase Y11_RS07210 PF05231 MASE1 Y11_RS07215 PF07690 Major Facilitator Superfamily Y11_RS07225 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS07230 PF00005 ABC transporter Y11_RS07230 PF08402 TOBE domain Y11_RS07240 PF08546 Ketopantoate reductase PanE/ApbA C terminal Y11_RS07240 PF02558 Ketopantoate reductase PanE/ApbA Y11_RS07250 PF00392 Bacterial regulatory proteins, gntR family Y11_RS07250 PF00155 Aminotransferase class I and II Y11_RS07260 PF00072 Response regulator receiver domain Y11_RS07260 PF01584 CheW-like domain Y11_RS07265 PF00144 Beta-lactamase Y11_RS07270 PF08220 DeoR-like helix-turn-helix domain Y11_RS07270 PF00455 DeoR C terminal sensor domain Y11_RS07280 PF02581 Thiamine monophosphate synthase Y11_RS07290 PF01554 MatE Y11_RS07295 PF00764 Arginosuccinate synthase Y11_RS07305 PF07024 ImpE protein Y11_RS07320 PF04717 Type VI secretion system, phage-baseplate injector Y11_RS07325 PF06744 Type VI secretion protein IcmF C-terminal Y11_RS07325 PF14331 ImcF-related N-terminal domain Y11_RS07325 PF06761 Intracellular multiplication and human macrophage-killing Y11_RS07335 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE Y11_RS07350 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y11_RS07355 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y11_RS07365 PF13954 PapC N-terminal domain Y11_RS07365 PF00577 Outer membrane usher protein Y11_RS07365 PF13953 PapC C-terminal domain Y11_RS07370 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_RS07370 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_RS07375 PF00419 Fimbrial protein Y11_RS07380 PF10431 C-terminal, D2-small domain, of ClpB protein Y11_RS07380 PF17871 AAA lid domain Y11_RS07380 PF07724 AAA domain (Cdc48 subfamily) Y11_RS07380 PF00004 ATPase family associated with various cellular activities (AAA) Y11_RS07385 PF05947 Type VI secretion system, TssF Y11_RS07430 PF03825 Nucleoside H+ symporter Y11_RS07440 PF02277 Phosphoribosyltransferase Y11_RS07445 PF00300 Histidine phosphatase superfamily (branch 1) Y11_RS07450 PF02654 Cobalamin-5-phosphate synthase Y11_RS07455 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Y11_RS07460 PF07685 CobB/CobQ-like glutamine amidotransferase domain Y11_RS07465 PF00005 ABC transporter Y11_RS07470 PF02361 Cobalt transport protein Y11_RS07475 PF02553 Cobalt transport protein component CbiN Y11_RS07485 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_RS07490 PF06180 Cobalt chelatase (CbiK) Y11_RS07495 PF02571 Precorrin-6x reductase CbiJ/CobK Y11_RS07500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_RS07505 PF01890 Cobalamin synthesis G C-terminus Y11_RS07505 PF11761 Cobalamin biosynthesis central region Y11_RS07505 PF11760 Cobalamin synthesis G N-terminal Y11_RS07510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_RS07515 PF05175 Methyltransferase small domain Y11_RS07520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_RS07525 PF01888 CbiD Y11_RS07530 PF02570 Precorrin-8X methylmutase Y11_RS07535 PF03186 CobD/Cbib protein Y11_RS07540 PF07685 CobB/CobQ-like glutamine amidotransferase domain Y11_RS07540 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y11_RS07545 PF10114 Sensory domain found in PocR Y11_RS07545 PF12833 Helix-turn-helix domain Y11_RS07550 PF00230 Major intrinsic protein Y11_RS07555 PF00936 BMC domain Y11_RS07560 PF00936 BMC domain Y11_RS07565 PF02286 Dehydratase large subunit Y11_RS07570 PF02288 Dehydratase medium subunit Y11_RS07575 PF02287 Dehydratase small subunit Y11_RS07580 PF18427 DD-reactivating factor swiveling domain Y11_RS07580 PF08841 Diol dehydratase reactivase ATPase-like domain Y11_RS07590 PF00936 BMC domain Y11_RS07600 PF06130 Phosphate propanoyltransferase Y11_RS07610 PF03319 Ethanolamine utilisation protein EutN/carboxysome Y11_RS07615 PF01923 Cobalamin adenosyltransferase Y11_RS07620 PF00171 Aldehyde dehydrogenase family Y11_RS07625 PF00465 Iron-containing alcohol dehydrogenase Y11_RS07630 PF13237 4Fe-4S dicluster domain Y11_RS07630 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y11_RS07630 PF10531 SLBB domain Y11_RS07630 PF13375 RnfC Barrel sandwich hybrid domain Y11_RS07640 PF00936 BMC domain Y11_RS07645 PF10662 Ethanolamine utilisation - propanediol utilisation Y11_RS07650 PF00871 Acetokinase family Y11_RS07655 PF10414 Sirohaem synthase dimerisation region Y11_RS07655 PF14824 Sirohaem biosynthesis protein central Y11_RS07655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_RS07660 PF00155 Aminotransferase class I and II Y11_RS07665 PF00288 GHMP kinases N terminal domain Y11_RS07670 PF13407 Periplasmic binding protein domain Y11_RS07675 PF00005 ABC transporter Y11_RS07680 PF02653 Branched-chain amino acid transport system / permease component Y11_RS07685 PF02653 Branched-chain amino acid transport system / permease component Y11_RS07690 PF04363 Protein of unknown function (DUF496) Y11_RS07695 PF04632 Fusaric acid resistance protein family Y11_RS07700 PF00550 Phosphopantetheine attachment site Y11_RS07700 PF07993 Male sterility protein Y11_RS07700 PF00501 AMP-binding enzyme Y11_RS07705 PF08411 Exonuclease C-terminal Y11_RS07705 PF00929 Exonuclease Y11_RS07710 PF13520 Amino acid permease Y11_RS07720 PF00465 Iron-containing alcohol dehydrogenase Y11_RS07730 PF02653 Branched-chain amino acid transport system / permease component Y11_RS07735 PF01370 NAD dependent epimerase/dehydratase family Y11_RS07740 PF01634 ATP phosphoribosyltransferase Y11_RS07740 PF08029 HisG, C-terminal domain Y11_RS07745 PF00815 Histidinol dehydrogenase Y11_RS07750 PF00155 Aminotransferase class I and II Y11_RS07755 PF00475 Imidazoleglycerol-phosphate dehydratase Y11_RS07760 PF00117 Glutamine amidotransferase class-I Y11_RS07765 PF00977 Histidine biosynthesis protein Y11_RS07770 PF00977 Histidine biosynthesis protein Y11_RS07775 PF01502 Phosphoribosyl-AMP cyclohydrolase Y11_RS07775 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Y11_RS07780 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Y11_RS07780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y11_RS07790 PF00483 Nucleotidyl transferase Y11_RS07795 PF00483 Nucleotidyl transferase Y11_RS07835 PF00534 Glycosyl transferases group 1 Y11_RS07835 PF00535 Glycosyl transferase family 2 Y11_RS07840 PF01370 NAD dependent epimerase/dehydratase family Y11_RS07845 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Y11_RS07850 PF00005 ABC transporter Y11_RS07855 PF01061 ABC-2 type transporter Y11_RS07865 PF00535 Glycosyl transferase family 2 Y11_RS07870 PF00483 Nucleotidyl transferase Y11_RS07880 PF00571 CBS domain Y11_RS07880 PF03471 Transporter associated domain Y11_RS07880 PF03741 Integral membrane protein TerC family Y11_RS07885 PF03606 C4-dicarboxylate anaerobic carrier Y11_RS07890 PF05170 AsmA family Y11_RS07895 PF00692 dUTPase Y11_RS07900 PF00485 Phosphoribulokinase / Uridine kinase family Y11_RS07905 PF10609 NUBPL iron-transfer P-loop NTPase Y11_RS07910 PF09334 tRNA synthetases class I (M) Y11_RS07910 PF01588 Putative tRNA binding domain Y11_RS07935 PF07690 Major Facilitator Superfamily Y11_RS07940 PF03788 LrgA family Y11_RS07945 PF04172 LrgB-like family Y11_RS07950 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region Y11_RS07950 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y11_RS07960 PF03949 Malic enzyme, NAD binding domain Y11_RS07960 PF00390 Malic enzyme, N-terminal domain Y11_RS07965 PF02698 DUF218 domain Y11_RS07970 PF01455 HupF/HypC family Y11_RS07975 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Y11_RS07980 PF12798 4Fe-4S binding domain Y11_RS07980 PF00037 4Fe-4S binding domain Y11_RS07985 PF00361 Proton-conducting membrane transporter Y11_RS07990 PF00146 NADH dehydrogenase Y11_RS07995 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y11_RS07995 PF00361 Proton-conducting membrane transporter Y11_RS08000 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Y11_RS08005 PF00361 Proton-conducting membrane transporter Y11_RS08005 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y11_RS08010 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Y11_RS08010 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Y11_RS08010 PF00374 Nickel-dependent hydrogenase Y11_RS08015 PF12838 4Fe-4S dicluster domain Y11_RS08020 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Y11_RS08025 PF07450 Formate hydrogenlyase maturation protein HycH Y11_RS08030 PF01750 Hydrogenase maturation protease Y11_RS08035 PF13247 4Fe-4S dicluster domain Y11_RS08035 PF12800 4Fe-4S binding domain Y11_RS08040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS08040 PF00384 Molybdopterin oxidoreductase Y11_RS08040 PF01568 Molydopterin dinucleotide binding domain Y11_RS08045 PF00158 Sigma-54 interaction domain Y11_RS08045 PF01590 GAF domain Y11_RS08050 PF02653 Branched-chain amino acid transport system / permease component Y11_RS08055 PF00005 ABC transporter Y11_RS08060 PF13407 Periplasmic binding protein domain Y11_RS08065 PF00356 Bacterial regulatory proteins, lacI family Y11_RS08070 PF04235 Protein of unknown function (DUF418) Y11_RS08075 PF01227 GTP cyclohydrolase I Y11_RS08080 PF06779 Uncharacterised MFS-type transporter YbfB Y11_RS08085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS08085 PF03466 LysR substrate binding domain Y11_RS08090 PF00107 Zinc-binding dehydrogenase Y11_RS08090 PF08240 Alcohol dehydrogenase GroES-like domain Y11_RS08095 PF00756 Putative esterase Y11_RS08115 PF00005 ABC transporter Y11_RS08115 PF02687 FtsX-like permease family Y11_RS08115 PF12704 MacB-like periplasmic core domain Y11_RS08130 PF00994 Probable molybdopterin binding domain Y11_RS08130 PF03454 MoeA C-terminal region (domain IV) Y11_RS08130 PF03453 MoeA N-terminal region (domain I and II) Y11_RS08135 PF00899 ThiF family Y11_RS08140 PF02371 Transposase IS116/IS110/IS902 family Y11_RS08140 PF01548 Transposase Y11_RS08145 PF00005 ABC transporter Y11_RS08145 PF12848 ABC transporter Y11_RS08165 PF13505 Outer membrane protein beta-barrel domain Y11_RS08175 PF00892 EamA-like transporter family Y11_RS08185 PF02469 Fasciclin domain Y11_RS08200 PF13847 Methyltransferase domain Y11_RS08205 PF00210 Ferritin-like domain Y11_RS08210 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y11_RS08215 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_RS08220 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS08225 PF00005 ABC transporter Y11_RS08230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_RS08230 PF13426 PAS domain Y11_RS08230 PF08447 PAS fold Y11_RS08235 PF05971 RNA methyltransferase Y11_RS08260 PF02885 Glycosyl transferase family, helical bundle domain Y11_RS08265 PF00230 Major intrinsic protein Y11_RS08270 PF13307 Helicase C-terminal domain Y11_RS08270 PF06733 DEAD_2 Y11_RS08275 PF00267 Gram-negative porin Y11_RS08285 PF00892 EamA-like transporter family Y11_RS08295 PF03466 LysR substrate binding domain Y11_RS08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS08310 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS08315 PF00005 ABC transporter Y11_RS08320 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS08325 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y11_RS08335 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y11_RS08335 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y11_RS08340 PF00581 Rhodanese-like domain Y11_RS08345 PF00005 ABC transporter Y11_RS08350 PF00005 ABC transporter Y11_RS08355 PF02653 Branched-chain amino acid transport system / permease component Y11_RS08360 PF02653 Branched-chain amino acid transport system / permease component Y11_RS08370 PF07308 Protein of unknown function (DUF1456) Y11_RS08375 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS08380 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS08390 PF00005 ABC transporter Y11_RS08395 PF04226 Transglycosylase associated protein Y11_RS08405 PF01844 HNH endonuclease Y11_RS08410 PF01928 CYTH domain Y11_RS08415 PF09330 D-lactate dehydrogenase, membrane binding Y11_RS08415 PF01565 FAD binding domain Y11_RS08420 PF00768 D-alanyl-D-alanine carboxypeptidase Y11_RS08430 PF00571 CBS domain Y11_RS08430 PF01769 Divalent cation transporter Y11_RS08430 PF03448 MgtE intracellular N domain Y11_RS08440 PF01207 Dihydrouridine synthase (Dus) Y11_RS08445 PF00270 DEAD/DEAH box helicase Y11_RS08445 PF00271 Helicase conserved C-terminal domain Y11_RS08450 PF09209 Tetracyclin repressor-like, C-terminal domain Y11_RS08450 PF00440 Bacterial regulatory proteins, tetR family Y11_RS08455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_RS08460 PF00005 ABC transporter Y11_RS08475 PF01027 Inhibitor of apoptosis-promoting Bax1 Y11_RS08480 PF02391 MoaE protein Y11_RS08485 PF02597 ThiS family Y11_RS08490 PF01967 MoaC family Y11_RS08495 PF04055 Radical SAM superfamily Y11_RS08495 PF06463 Molybdenum Cofactor Synthesis C Y11_RS08500 PF01933 Uncharacterised protein family UPF0052 Y11_RS08505 PF09905 DNA-binding protein VF530 Y11_RS08510 PF17757 UvrB interaction domain Y11_RS08510 PF00271 Helicase conserved C-terminal domain Y11_RS08510 PF04851 Type III restriction enzyme, res subunit Y11_RS08510 PF02151 UvrB/uvrC motif Y11_RS08510 PF12344 Ultra-violet resistance protein B Y11_RS08515 PF00005 ABC transporter Y11_RS08525 PF08241 Methyltransferase domain Y11_RS08530 PF00155 Aminotransferase class I and II Y11_RS08535 PF06968 Biotin and Thiamin Synthesis associated domain Y11_RS08535 PF04055 Radical SAM superfamily Y11_RS08540 PF00202 Aminotransferase class-III Y11_RS08545 PF10282 Lactonase, 7-bladed beta-propeller Y11_RS08555 PF00005 ABC transporter Y11_RS08555 PF03459 TOBE domain Y11_RS08560 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS08570 PF10766 Multidrug efflux pump-associated protein AcrZ Y11_RS08575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS08575 PF03459 TOBE domain Y11_RS08580 PF00005 ABC transporter Y11_RS08590 PF16363 GDP-mannose 4,6 dehydratase Y11_RS08595 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Y11_RS08595 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Y11_RS08600 PF10509 Galactokinase galactose-binding signature Y11_RS08600 PF08544 GHMP kinases C terminal Y11_RS08600 PF00288 GHMP kinases N terminal domain Y11_RS08605 PF01263 Aldose 1-epimerase Y11_RS08615 PF00082 Subtilase family Y11_RS08620 PF01223 DNA/RNA non-specific endonuclease Y11_RS08625 PF00300 Histidine phosphatase superfamily (branch 1) Y11_RS08630 PF00793 DAHP synthetase I family Y11_RS08635 PF01545 Cation efflux family Y11_RS08640 PF04973 Nicotinamide mononucleotide transporter Y11_RS08645 PF02445 Quinolinate synthetase A protein Y11_RS08655 PF16331 TolA binding protein trimerisation Y11_RS08655 PF13174 Tetratricopeptide repeat Y11_RS08660 PF00691 OmpA family Y11_RS08665 PF04052 TolB amino-terminal domain Y11_RS08665 PF07676 WD40-like Beta Propeller Repeat Y11_RS08670 PF06519 TolA C-terminal Y11_RS08670 PF06519 TolA C-terminal Y11_RS08675 PF02472 Biopolymer transport protein ExbD/TolR Y11_RS08680 PF01618 MotA/TolQ/ExbB proton channel family Y11_RS08685 PF03061 Thioesterase superfamily Y11_RS08690 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) Y11_RS08695 PF08173 Membrane bound YbgT-like protein Y11_RS08700 PF02322 Cytochrome bd terminal oxidase subunit II Y11_RS08705 PF01654 Cytochrome bd terminal oxidase subunit I Y11_RS08710 PF02872 5'-nucleotidase, C-terminal domain Y11_RS08710 PF00149 Calcineurin-like phosphoesterase Y11_RS08715 PF02629 CoA binding domain Y11_RS08715 PF00549 CoA-ligase Y11_RS08720 PF08442 ATP-grasp domain Y11_RS08720 PF00549 CoA-ligase Y11_RS08725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y11_RS08725 PF00364 Biotin-requiring enzyme Y11_RS08725 PF02817 e3 binding domain Y11_RS08730 PF00676 Dehydrogenase E1 component Y11_RS08730 PF16078 2-oxoglutarate dehydrogenase N-terminus Y11_RS08730 PF16870 2-oxoglutarate dehydrogenase C-terminal Y11_RS08730 PF02779 Transketolase, pyrimidine binding domain Y11_RS08735 PF13085 2Fe-2S iron-sulfur cluster binding domain Y11_RS08740 PF02910 Fumarate reductase flavoprotein C-term Y11_RS08740 PF00890 FAD binding domain Y11_RS08745 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Y11_RS08750 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Y11_RS08755 PF00285 Citrate synthase, C-terminal domain Y11_RS08760 PF01470 Pyroglutamyl peptidase Y11_RS08775 PF03746 LamB/YcsF family Y11_RS08780 PF02626 Carboxyltransferase domain, subdomain A and B Y11_RS08790 PF01784 NIF3 (NGG1p interacting factor 3) Y11_RS08795 PF02112 cAMP phosphodiesterases class-II Y11_RS08800 PF00875 DNA photolyase Y11_RS08800 PF03441 FAD binding domain of DNA photolyase Y11_RS08805 PF08349 Protein of unknown function (DUF1722) Y11_RS08810 PF11647 Membrane Localization Domain Y11_RS08810 PF11713 Peptidase C80 family Y11_RS08810 PF16671 Actin cross-linking domain Y11_RS08810 PF16671 Actin cross-linking domain Y11_RS08810 PF12146 Serine aminopeptidase, S33 Y11_RS08810 PF07634 RtxA repeat Y11_RS08810 PF11713 Peptidase C80 family Y11_RS08810 PF12146 Serine aminopeptidase, S33 Y11_RS08810 PF07634 RtxA repeat Y11_RS08810 PF11647 Membrane Localization Domain Y11_RS08815 PF02794 RTX toxin acyltransferase family Y11_RS08825 PF10725 Protein of unknown function (DUF2517) Y11_RS08830 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) Y11_RS08835 PF03814 Potassium-transporting ATPase A subunit Y11_RS08845 PF02669 K+-transporting ATPase, c chain Y11_RS08850 PF02702 Osmosensitive K+ channel His kinase sensor domain Y11_RS08850 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS08850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS08850 PF13492 GAF domain Y11_RS08850 PF13493 Domain of unknown function (DUF4118) Y11_RS08855 PF00486 Transcriptional regulatory protein, C terminal Y11_RS08855 PF00072 Response regulator receiver domain Y11_RS08860 PF00892 EamA-like transporter family Y11_RS08870 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Y11_RS08870 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Y11_RS08870 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Y11_RS08870 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Y11_RS08875 PF03925 SeqA protein C-terminal domain Y11_RS08875 PF17206 SeqA protein N-terminal domain Y11_RS08880 PF12697 Alpha/beta hydrolase family Y11_RS08885 PF01402 Ribbon-helix-helix protein, copG family Y11_RS08890 PF00672 HAMP domain Y11_RS08890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_RS08890 PF02203 Tar ligand binding domain homologue Y11_RS08895 PF00258 Flavodoxin Y11_RS08900 PF01475 Ferric uptake regulator family Y11_RS08905 PF02838 Glycosyl hydrolase family 20, domain 2 Y11_RS08905 PF00728 Glycosyl hydrolase family 20, catalytic domain Y11_RS08905 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain Y11_RS08905 PF03173 Putative carbohydrate binding domain Y11_RS08910 PF13982 YbfN-like lipoprotein Y11_RS08915 PF03573 outer membrane porin, OprD family Y11_RS08920 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y11_RS08920 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Y11_RS08925 PF02378 Phosphotransferase system, EIIC Y11_RS08925 PF00367 phosphotransferase system, EIIB Y11_RS08925 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Y11_RS08930 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Y11_RS08935 PF01979 Amidohydrolase family Y11_RS08940 PF00480 ROK family Y11_RS08940 PF01047 MarR family Y11_RS08945 PF13344 Haloacid dehalogenase-like hydrolase Y11_RS08950 PF00733 Asparagine synthase Y11_RS08950 PF13537 Glutamine amidotransferase domain Y11_RS08985 PF01494 FAD binding domain Y11_RS08990 PF00919 Uncharacterized protein family UPF0004 Y11_RS08990 PF01938 TRAM domain Y11_RS08990 PF04055 Radical SAM superfamily Y11_RS08995 PF02562 PhoH-like protein Y11_RS09000 PF02130 Uncharacterized protein family UPF0054 Y11_RS09005 PF00571 CBS domain Y11_RS09005 PF03471 Transporter associated domain Y11_RS09010 PF00795 Carbon-nitrogen hydrolase Y11_RS09020 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_RS09025 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS09030 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS09035 PF00005 ABC transporter Y11_RS09040 PF07295 Zinc-ribbon containing domain Y11_RS09045 PF00133 tRNA synthetases class I (I, L, M and V) Y11_RS09045 PF08264 Anticodon-binding domain of tRNA Y11_RS09045 PF13603 Leucyl-tRNA synthetase, Domain 2 Y11_RS09050 PF04390 Lipopolysaccharide-assembly Y11_RS09055 PF06144 DNA polymerase III, delta subunit Y11_RS09055 PF14840 Processivity clamp loader gamma complex DNA pol III C-term Y11_RS09060 PF01467 Cytidylyltransferase-like Y11_RS09070 PF02590 Predicted SPOUT methyltransferase Y11_RS09075 PF00905 Penicillin binding protein transpeptidase domain Y11_RS09075 PF03717 Penicillin-binding Protein dimerisation domain Y11_RS09080 PF01098 Cell cycle protein Y11_RS09085 PF03330 Lytic transglycolase Y11_RS09085 PF05036 Sporulation related domain Y11_RS09090 PF00768 D-alanyl-D-alanine carboxypeptidase Y11_RS09090 PF07943 Penicillin-binding protein 5, C-terminal domain Y11_RS09095 PF04359 Protein of unknown function (DUF493) Y11_RS09100 PF03099 Biotin/lipoate A/B protein ligase family Y11_RS09105 PF04055 Radical SAM superfamily Y11_RS09105 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Y11_RS09110 PF02416 mttA/Hcf106 family Y11_RS09115 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS09115 PF05230 MASE2 domain Y11_RS09120 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Y11_RS09125 PF00313 'Cold-shock' DNA-binding domain Y11_RS09130 PF00313 'Cold-shock' DNA-binding domain Y11_RS09135 PF00196 Bacterial regulatory proteins, luxR family Y11_RS09145 PF00149 Calcineurin-like phosphoesterase Y11_RS09160 PF00664 ABC transporter transmembrane region Y11_RS09160 PF00005 ABC transporter Y11_RS09165 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Y11_RS09170 PF00221 Aromatic amino acid lyase Y11_RS09175 PF08007 Cupin superfamily protein Y11_RS09185 PF00589 Phage integrase family Y11_RS09255 PF00589 Phage integrase family Y11_RS09255 PF13356 Arm DNA-binding domain Y11_RS09255 PF14659 Phage integrase, N-terminal SAM-like domain Y11_RS09265 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Y11_RS09265 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Y11_RS09275 PF09190 DALR domain Y11_RS09275 PF01406 tRNA synthetases class I (C) catalytic domain Y11_RS09280 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Y11_RS09285 PF00149 Calcineurin-like phosphoesterase Y11_RS09290 PF00731 AIR carboxylase Y11_RS09295 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Y11_RS09295 PF02222 ATP-grasp domain Y11_RS09305 PF00005 ABC transporter Y11_RS09310 PF13472 GDSL-like Lipase/Acylhydrolase family Y11_RS09315 PF00106 short chain dehydrogenase Y11_RS09320 PF00085 Thioredoxin Y11_RS09325 PF01145 SPFH domain / Band 7 family Y11_RS09325 PF16200 C-terminal region of band_7 Y11_RS09330 PF01957 NfeD-like C-terminal, partner-binding Y11_RS09335 PF13411 MerR HTH family regulatory protein Y11_RS09340 PF00403 Heavy-metal-associated domain Y11_RS09345 PF01963 TraB family Y11_RS09350 PF04073 Aminoacyl-tRNA editing domain Y11_RS09360 PF02872 5'-nucleotidase, C-terminal domain Y11_RS09360 PF00149 Calcineurin-like phosphoesterase Y11_RS09365 PF07690 Major Facilitator Superfamily Y11_RS09370 PF02254 TrkA-N domain Y11_RS09370 PF00999 Sodium/hydrogen exchanger family Y11_RS09375 PF00294 pfkB family carbohydrate kinase Y11_RS09380 PF16363 GDP-mannose 4,6 dehydratase Y11_RS09385 PF13439 Glycosyltransferase Family 4 Y11_RS09385 PF00534 Glycosyl transferases group 1 Y11_RS09390 PF02719 Polysaccharide biosynthesis protein Y11_RS09395 PF00953 Glycosyl transferase family 4 Y11_RS09400 PF03033 Glycosyltransferase family 28 N-terminal domain Y11_RS09400 PF04101 Glycosyltransferase family 28 C-terminal domain Y11_RS09405 PF00534 Glycosyl transferases group 1 Y11_RS09405 PF13439 Glycosyltransferase Family 4 Y11_RS09410 PF00535 Glycosyl transferase family 2 Y11_RS09415 PF00535 Glycosyl transferase family 2 Y11_RS09415 PF01501 Glycosyl transferase family 8 Y11_RS09420 PF01943 Polysaccharide biosynthesis protein Y11_RS09425 PF00762 Ferrochelatase Y11_RS09430 PF05191 Adenylate kinase, active site lid Y11_RS09435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS09435 PF00183 Hsp90 protein Y11_RS09440 PF13662 Toprim domain Y11_RS09440 PF02132 RecR protein Y11_RS09445 PF02575 YbaB/EbfC DNA-binding family Y11_RS09450 PF12170 DNA polymerase III tau subunit V interacting with alpha Y11_RS09450 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Y11_RS09450 PF12169 DNA polymerase III subunits gamma and tau domain III Y11_RS09455 PF00156 Phosphoribosyl transferase domain Y11_RS09460 PF04304 Protein of unknown function (DUF454) Y11_RS09470 PF10689 Protein of unknown function (DUF2496) Y11_RS09475 PF12794 Mechanosensitive ion channel inner membrane domain 1 Y11_RS09475 PF12795 Mechanosensitive ion channel porin domain Y11_RS09475 PF00924 Mechanosensitive ion channel Y11_RS09480 PF02635 DsrE/DsrF-like family Y11_RS09485 PF08361 MAATS-type transcriptional repressor, C-terminal region Y11_RS09485 PF00440 Bacterial regulatory proteins, tetR family Y11_RS09490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_RS09490 PF00529 HlyD membrane-fusion protein of T1SS Y11_RS09495 PF00873 AcrB/AcrD/AcrF family Y11_RS09510 PF01168 Alanine racemase, N-terminal domain Y11_RS09515 PF01676 Metalloenzyme superfamily Y11_RS09520 PF10941 Protein of unknown function DUF2620 Y11_RS09525 PF10797 Protein of unknown function Y11_RS09530 PF01197 Ribosomal protein L31 Y11_RS09535 PF00444 Ribosomal protein L36 Y11_RS09540 PF01297 Zinc-uptake complex component A periplasmic Y11_RS09545 PF00950 ABC 3 transport family Y11_RS09550 PF00005 ABC transporter Y11_RS09560 PF10757 Biofilm formation regulator YbaJ Y11_RS09565 PF05321 Haemolysin expression modulating protein Y11_RS09570 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y11_RS09575 PF09619 Type III secretion system lipoprotein chaperone (YscW) Y11_RS09585 PF00909 Ammonium Transporter Family Y11_RS09590 PF00543 Nitrogen regulatory protein P-II Y11_RS09595 PF00005 ABC transporter Y11_RS09595 PF00664 ABC transporter transmembrane region Y11_RS09600 PF00005 ABC transporter Y11_RS09600 PF00664 ABC transporter transmembrane region Y11_RS09605 PF01037 Lrp/AsnC ligand binding domain Y11_RS09605 PF13404 AsnC-type helix-turn-helix domain Y11_RS09620 PF12793 Sugar transport-related sRNA regulator N-term Y11_RS09620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_RS09625 PF06508 Queuosine biosynthesis protein QueC Y11_RS09640 PF13145 PPIC-type PPIASE domain Y11_RS09645 PF00216 Bacterial DNA-binding protein Y11_RS09650 PF02190 ATP-dependent protease La (LON) substrate-binding domain Y11_RS09650 PF00004 ATPase family associated with various cellular activities (AAA) Y11_RS09650 PF05362 Lon protease (S16) C-terminal proteolytic domain Y11_RS09655 PF07724 AAA domain (Cdc48 subfamily) Y11_RS09655 PF06689 ClpX C4-type zinc finger Y11_RS09655 PF10431 C-terminal, D2-small domain, of ClpB protein Y11_RS09660 PF00574 Clp protease Y11_RS09665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y11_RS09665 PF05698 Bacterial trigger factor protein (TF) C-terminus Y11_RS09665 PF05697 Bacterial trigger factor protein (TF) Y11_RS09670 PF01722 BolA-like protein Y11_RS09675 PF03923 Uncharacterized lipoprotein Y11_RS09675 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Y11_RS09680 PF07690 Major Facilitator Superfamily Y11_RS09685 PF03502 Nucleoside-specific channel-forming protein, Tsx Y11_RS09690 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Y11_RS09690 PF06481 COX Aromatic Rich Motif Y11_RS09695 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y11_RS09700 PF00510 Cytochrome c oxidase subunit III Y11_RS09705 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Y11_RS09710 PF01040 UbiA prenyltransferase family Y11_RS09715 PF07690 Major Facilitator Superfamily Y11_RS09720 PF04461 Protein of unknown function (DUF520) Y11_RS09725 PF08546 Ketopantoate reductase PanE/ApbA C terminal Y11_RS09725 PF02558 Ketopantoate reductase PanE/ApbA Y11_RS09730 PF01965 DJ-1/PfpI family Y11_RS09735 PF02926 THUMP domain Y11_RS09735 PF02568 Thiamine biosynthesis protein (ThiI) Y11_RS09740 PF02609 Exonuclease VII small subunit Y11_RS09745 PF00348 Polyprenyl synthetase Y11_RS09750 PF02779 Transketolase, pyrimidine binding domain Y11_RS09750 PF02780 Transketolase, C-terminal domain Y11_RS09750 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Y11_RS09755 PF01548 Transposase Y11_RS09755 PF02371 Transposase IS116/IS110/IS902 family Y11_RS09760 PF04608 Phosphatidylglycerophosphatase A Y11_RS09765 PF02769 AIR synthase related protein, C-terminal domain Y11_RS09765 PF00586 AIR synthase related protein, N-terminal domain Y11_RS09770 PF01029 NusB family Y11_RS09775 PF00885 6,7-dimethyl-8-ribityllumazine synthase Y11_RS09780 PF01872 RibD C-terminal domain Y11_RS09780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y11_RS09785 PF03477 ATP cone domain Y11_RS09800 PF01548 Transposase Y11_RS09800 PF02371 Transposase IS116/IS110/IS902 family Y11_RS09805 PF02355 Protein export membrane protein Y11_RS09805 PF07549 SecD/SecF GG Motif Y11_RS09810 PF07549 SecD/SecF GG Motif Y11_RS09810 PF13721 SecD export protein N-terminal TM region Y11_RS09810 PF02355 Protein export membrane protein Y11_RS09815 PF02699 Preprotein translocase subunit Y11_RS09820 PF01702 Queuine tRNA-ribosyltransferase Y11_RS09835 PF02547 Queuosine biosynthesis protein Y11_RS09840 PF04336 Acyl carrier protein phosphodiesterase Y11_RS09845 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y11_RS09845 PF00578 AhpC/TSA family Y11_RS09850 PF01848 Hok/gef family Y11_RS09865 PF00128 Alpha amylase, catalytic domain Y11_RS09865 PF02903 Alpha amylase, N-terminal ig-like domain Y11_RS09870 PF00324 Amino acid permease Y11_RS09875 PF05525 Branched-chain amino acid transport protein Y11_RS09880 PF12849 PBP superfamily domain Y11_RS09885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS09885 PF00989 PAS fold Y11_RS09885 PF11808 Phosphate regulon sensor protein PhoR Y11_RS09885 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS09890 PF00486 Transcriptional regulatory protein, C terminal Y11_RS09890 PF00072 Response regulator receiver domain Y11_RS09895 PF00149 Calcineurin-like phosphoesterase Y11_RS09895 PF12320 Type 5 capsule protein repressor C-terminal domain Y11_RS09900 PF13476 AAA domain Y11_RS09905 PF00480 ROK family Y11_RS09910 PF04381 Putative exonuclease, RdgC Y11_RS09915 PF06865 Pyrimidine/purine nucleoside phosphorylase Y11_RS09920 PF01202 Shikimate kinase Y11_RS09925 PF00593 TonB dependent receptor Y11_RS09925 PF07715 TonB-dependent Receptor Plug Domain Y11_RS09945 PF08241 Methyltransferase domain Y11_RS09960 PF06165 Glycosyltransferase family 36 Y11_RS09960 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Y11_RS09960 PF10091 Putative glucoamylase Y11_RS09965 PF07317 Flagellar regulator YcgR Y11_RS09965 PF07238 PilZ domain Y11_RS09970 PF02056 Family 4 glycosyl hydrolase Y11_RS09970 PF11975 Family 4 glycosyl hydrolase C-terminal domain Y11_RS09975 PF02378 Phosphotransferase system, EIIC Y11_RS09975 PF00367 phosphotransferase system, EIIB Y11_RS09980 PF07702 UTRA domain Y11_RS09980 PF00392 Bacterial regulatory proteins, gntR family Y11_RS09985 PF00171 Aldehyde dehydrogenase family Y11_RS09990 PF00696 Amino acid kinase family Y11_RS09990 PF01472 PUA domain Y11_RS09995 PF07417 Sigma factor-binding transcriptional regulator Crl Y11_RS10000 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) Y11_RS10005 PF00156 Phosphoribosyl transferase domain Y11_RS10010 PF01546 Peptidase family M20/M25/M40 Y11_RS10010 PF07687 Peptidase dimerisation domain Y11_RS10015 PF11798 IMS family HHH motif Y11_RS10015 PF00817 impB/mucB/samB family Y11_RS10015 PF11799 impB/mucB/samB family C-terminal domain Y11_RS10025 PF00291 Pyridoxal-phosphate dependent enzyme Y11_RS10030 PF13309 HTH domain Y11_RS10030 PF08348 YheO-like PAS domain Y11_RS10035 PF07478 D-ala D-ala ligase C-terminus Y11_RS10035 PF01820 D-ala D-ala ligase N-terminus Y11_RS10040 PF03009 Glycerophosphoryl diester phosphodiesterase family Y11_RS10045 PF04400 (Na+)-NQR maturation NqrM Y11_RS10050 PF02424 ApbE family Y11_RS10055 PF00175 Oxidoreductase NAD-binding domain Y11_RS10055 PF00111 2Fe-2S iron-sulfur cluster binding domain Y11_RS10055 PF00970 Oxidoreductase FAD-binding domain Y11_RS10060 PF02508 Rnf-Nqr subunit, membrane protein Y11_RS10065 PF02508 Rnf-Nqr subunit, membrane protein Y11_RS10070 PF04205 FMN-binding domain Y11_RS10075 PF03116 NQR2, RnfD, RnfE family Y11_RS10080 PF11973 NQRA C-terminal domain Y11_RS10080 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Y11_RS10085 PF03734 L,D-transpeptidase catalytic domain Y11_RS10090 PF13230 Glutamine amidotransferases class-II Y11_RS10095 PF13580 SIS domain Y11_RS10100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y11_RS10100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y11_RS10100 PF09317 Domain of unknown function (DUF1974) Y11_RS10105 PF18254 HMW1 domain 2 Y11_RS10105 PF18071 HMW1C N-terminal Y11_RS10115 PF05860 haemagglutination activity domain Y11_RS10120 PF08479 POTRA domain, ShlB-type Y11_RS10120 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y11_RS10125 PF01636 Phosphotransferase enzyme family Y11_RS10130 PF01008 Initiation factor 2 subunit family Y11_RS10135 PF03079 ARD/ARD' family Y11_RS10145 PF00596 Class II Aldolase and Adducin N-terminal domain Y11_RS10150 PF00155 Aminotransferase class I and II Y11_RS10155 PF00795 Carbon-nitrogen hydrolase Y11_RS10160 PF07687 Peptidase dimerisation domain Y11_RS10160 PF01546 Peptidase family M20/M25/M40 Y11_RS10165 PF00266 Aminotransferase class-V Y11_RS10170 PF00005 ABC transporter Y11_RS10175 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS10180 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS10185 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_RS10205 PF01425 Amidase Y11_RS10215 PF07690 Major Facilitator Superfamily Y11_RS10220 PF03591 AzlC protein Y11_RS10225 PF05437 Branched-chain amino acid transport protein (AzlD) Y11_RS10230 PF01047 MarR family Y11_RS10235 PF02321 Outer membrane efflux protein Y11_RS10240 PF00529 HlyD membrane-fusion protein of T1SS Y11_RS10240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_RS10245 PF07690 Major Facilitator Superfamily Y11_RS10255 PF01548 Transposase Y11_RS10255 PF02371 Transposase IS116/IS110/IS902 family Y11_RS10260 PF00588 SpoU rRNA Methylase family Y11_RS10260 PF08032 RNA 2'-O ribose methyltransferase substrate binding Y11_RS10265 PF00085 Thioredoxin Y11_RS10270 PF03942 DTW domain Y11_RS10275 PF00583 Acetyltransferase (GNAT) family Y11_RS10275 PF13607 Succinyl-CoA ligase like flavodoxin domain Y11_RS10275 PF13380 CoA binding domain Y11_RS10280 PF13091 PLD-like domain Y11_RS10285 PF10043 Predicted periplasmic lipoprotein (DUF2279) Y11_RS10310 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Y11_RS10315 PF13525 Outer membrane lipoprotein Y11_RS10320 PF00849 RNA pseudouridylate synthase Y11_RS10320 PF01479 S4 domain Y11_RS10325 PF02578 Multi-copper polyphenol oxidoreductase laccase Y11_RS10330 PF07724 AAA domain (Cdc48 subfamily) Y11_RS10330 PF02861 Clp amino terminal domain, pathogenicity island component Y11_RS10330 PF10431 C-terminal, D2-small domain, of ClpB protein Y11_RS10330 PF00004 ATPase family associated with various cellular activities (AAA) Y11_RS10330 PF17871 AAA lid domain Y11_RS10340 PF02371 Transposase IS116/IS110/IS902 family Y11_RS10340 PF01548 Transposase Y11_RS10345 PF01817 Chorismate mutase type II Y11_RS10345 PF00800 Prephenate dehydratase Y11_RS10350 PF01817 Chorismate mutase type II Y11_RS10350 PF02153 Prephenate dehydrogenase Y11_RS10355 PF00793 DAHP synthetase I family Y11_RS10360 PF04397 LytTr DNA-binding domain Y11_RS10360 PF00072 Response regulator receiver domain Y11_RS10365 PF03605 Anaerobic c4-dicarboxylate membrane transporter Y11_RS10370 PF04338 Protein of unknown function, DUF481 Y11_RS10375 PF01245 Ribosomal protein L19 Y11_RS10380 PF01746 tRNA (Guanine-1)-methyltransferase Y11_RS10385 PF01782 RimM N-terminal domain Y11_RS10385 PF05239 PRC-barrel domain Y11_RS10390 PF00886 Ribosomal protein S16 Y11_RS10395 PF00448 SRP54-type protein, GTPase domain Y11_RS10395 PF02881 SRP54-type protein, helical bundle domain Y11_RS10395 PF02978 Signal peptide binding domain Y11_RS10400 PF01578 Cytochrome C assembly protein Y11_RS10405 PF03471 Transporter associated domain Y11_RS10405 PF01595 Cyclin M transmembrane N-terminal domain Y11_RS10405 PF00571 CBS domain Y11_RS10410 PF02664 S-Ribosylhomocysteinase (LuxS) Y11_RS10415 PF04262 Glutamate-cysteine ligase Y11_RS10420 PF09335 SNARE associated Golgi protein Y11_RS10425 PF13419 Haloacid dehalogenase-like hydrolase Y11_RS10445 PF02599 Global regulator protein family Y11_RS10450 PF01411 tRNA synthetases class II (A) Y11_RS10450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y11_RS10450 PF02272 DHHA1 domain Y11_RS10455 PF02631 RecX family Y11_RS10460 PF00154 recA bacterial DNA recombination protein Y11_RS10465 PF02464 Competence-damaged protein Y11_RS10470 PF07690 Major Facilitator Superfamily Y11_RS10480 PF02613 Nitrate reductase delta subunit Y11_RS10485 PF04976 DMSO reductase anchor subunit (DmsC) Y11_RS10490 PF12800 4Fe-4S binding domain Y11_RS10490 PF13247 4Fe-4S dicluster domain Y11_RS10495 PF00384 Molybdopterin oxidoreductase Y11_RS10495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS10495 PF01568 Molydopterin dinucleotide binding domain Y11_RS10500 PF05681 Fumarate hydratase (Fumerase) Y11_RS10500 PF05683 Fumarase C-terminus Y11_RS10505 PF13458 Periplasmic binding protein Y11_RS10510 PF02653 Branched-chain amino acid transport system / permease component Y11_RS10515 PF02653 Branched-chain amino acid transport system / permease component Y11_RS10515 PF11862 Domain of unknown function (DUF3382) Y11_RS10520 PF00005 ABC transporter Y11_RS10525 PF00005 ABC transporter Y11_RS10545 PF00795 Carbon-nitrogen hydrolase Y11_RS10550 PF13936 Helix-turn-helix domain Y11_RS10550 PF04198 Putative sugar-binding domain Y11_RS10555 PF03610 PTS system fructose IIA component Y11_RS10560 PF03830 PTS system sorbose subfamily IIB component Y11_RS10565 PF03609 PTS system sorbose-specific iic component Y11_RS10570 PF03613 PTS system mannose/fructose/sorbose family IID component Y11_RS10575 PF08240 Alcohol dehydrogenase GroES-like domain Y11_RS10575 PF00107 Zinc-binding dehydrogenase Y11_RS10580 PF01022 Bacterial regulatory protein, arsR family Y11_RS10585 PF03764 Elongation factor G, domain IV Y11_RS10585 PF00009 Elongation factor Tu GTP binding domain Y11_RS10585 PF00679 Elongation factor G C-terminus Y11_RS10585 PF14492 Elongation Factor G, domain II Y11_RS10585 PF03144 Elongation factor Tu domain 2 Y11_RS10595 PF03150 Di-haem cytochrome c peroxidase Y11_RS10595 PF14376 Haem-binding domain Y11_RS10595 PF00034 Cytochrome c Y11_RS10600 PF00155 Aminotransferase class I and II Y11_RS10605 PF01548 Transposase Y11_RS10605 PF02371 Transposase IS116/IS110/IS902 family Y11_RS10625 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_RS10625 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_RS10630 PF02321 Outer membrane efflux protein Y11_RS10635 PF12704 MacB-like periplasmic core domain Y11_RS10635 PF00005 ABC transporter Y11_RS10635 PF02687 FtsX-like permease family Y11_RS10640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_RS10645 PF03412 Peptidase C39 family Y11_RS10645 PF00005 ABC transporter Y11_RS10645 PF00664 ABC transporter transmembrane region Y11_RS10670 PF00419 Fimbrial protein Y11_RS10675 PF00419 Fimbrial protein Y11_RS10685 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_RS10685 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_RS10690 PF00577 Outer membrane usher protein Y11_RS10690 PF13954 PapC N-terminal domain Y11_RS10690 PF13953 PapC C-terminal domain Y11_RS10700 PF00419 Fimbrial protein Y11_RS10715 PF01624 MutS domain I Y11_RS10715 PF05192 MutS domain III Y11_RS10715 PF00488 MutS domain V Y11_RS10715 PF05190 MutS family domain IV Y11_RS10715 PF05188 MutS domain II Y11_RS10720 PF04542 Sigma-70 region 2 Y11_RS10720 PF04545 Sigma-70, region 4 Y11_RS10720 PF00140 Sigma-70 factor, region 1.2 Y11_RS10720 PF04539 Sigma-70 region 3 Y11_RS10725 PF01551 Peptidase family M23 Y11_RS10725 PF01476 LysM domain Y11_RS10735 PF01975 Survival protein SurE Y11_RS10740 PF01142 tRNA pseudouridine synthase D (TruD) Y11_RS10745 PF02542 YgbB family Y11_RS10750 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Y11_RS10755 PF04977 Septum formation initiator Y11_RS10760 PF12084 Protein of unknown function (DUF3561) Y11_RS10770 PF00009 Elongation factor Tu GTP binding domain Y11_RS10775 PF01507 Phosphoadenosine phosphosulfate reductase family Y11_RS10780 PF10414 Sirohaem synthase dimerisation region Y11_RS10780 PF14824 Sirohaem biosynthesis protein central Y11_RS10780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_RS10785 PF04389 Peptidase family M28 Y11_RS10800 PF01507 Phosphoadenosine phosphosulfate reductase family Y11_RS10805 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y11_RS10805 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y11_RS10810 PF00175 Oxidoreductase NAD-binding domain Y11_RS10810 PF00667 FAD binding domain Y11_RS10810 PF00258 Flavodoxin Y11_RS10815 PF01242 6-pyruvoyl tetrahydropterin synthase Y11_RS10835 PF04055 Radical SAM superfamily Y11_RS10840 PF00080 Copper/zinc superoxide dismutase (SODC) Y11_RS10865 PF01842 ACT domain Y11_RS10865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_RS10865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y11_RS10870 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Y11_RS10875 PF03466 LysR substrate binding domain Y11_RS10875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS10880 PF04402 Protein of unknown function (DUF541) Y11_RS10885 PF01810 LysE type translocator Y11_RS10895 PF05552 Conserved TM helix Y11_RS10895 PF00924 Mechanosensitive ion channel Y11_RS10900 PF00102 Protein-tyrosine phosphatase Y11_RS10900 PF09013 YopH, N-terminal Y11_RS10905 PF01116 Fructose-bisphosphate aldolase class-II Y11_RS10910 PF00162 Phosphoglycerate kinase Y11_RS10915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y11_RS10915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y11_RS10920 PF02779 Transketolase, pyrimidine binding domain Y11_RS10920 PF02780 Transketolase, C-terminal domain Y11_RS10920 PF00456 Transketolase, thiamine diphosphate binding domain Y11_RS10925 PF01435 Peptidase family M48 Y11_RS10930 PF00355 Rieske [2Fe-2S] domain Y11_RS10935 PF17944 Arginine decarboxylase C-terminal helical extension Y11_RS10935 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y11_RS10935 PF17810 Arginine decarboxylase helical bundle domain Y11_RS10940 PF02772 S-adenosylmethionine synthetase, central domain Y11_RS10940 PF00438 S-adenosylmethionine synthetase, N-terminal domain Y11_RS10940 PF02773 S-adenosylmethionine synthetase, C-terminal domain Y11_RS10950 PF04143 Sulphur transport Y11_RS10960 PF10263 SprT-like family Y11_RS10960 PF17283 SprT-like zinc ribbon domain Y11_RS10965 PF04231 Endonuclease I Y11_RS10970 PF04452 RNA methyltransferase Y11_RS10975 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Y11_RS10975 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Y11_RS10980 PF02622 Uncharacterized ACR, COG1678 Y11_RS10985 PF03652 Holliday junction resolvase Y11_RS10990 PF00795 Carbon-nitrogen hydrolase Y11_RS10995 PF04371 Porphyromonas-type peptidyl-arginine deiminase Y11_RS11000 PF00437 Type II/IV secretion system protein Y11_RS11005 PF01168 Alanine racemase, N-terminal domain Y11_RS11010 PF14748 Pyrroline-5-carboxylate reductase dimerisation Y11_RS11010 PF03807 NADP oxidoreductase coenzyme F420-dependent Y11_RS11015 PF02325 YGGT family Y11_RS11020 PF02594 Uncharacterised ACR, YggU family COG1872 Y11_RS11025 PF01725 Ham1 family Y11_RS11030 PF04055 Radical SAM superfamily Y11_RS11030 PF06969 HemN C-terminal domain Y11_RS11035 PF11101 Protein of unknown function (DUF2884) Y11_RS11040 PF04960 Glutaminase Y11_RS11045 PF04320 Protein with unknown function (DUF469) Y11_RS11050 PF02390 Putative methyltransferase Y11_RS11055 PF00633 Helix-hairpin-helix motif Y11_RS11055 PF14815 NUDIX domain Y11_RS11055 PF00730 HhH-GPD superfamily base excision DNA repair protein Y11_RS11055 PF10576 Iron-sulfur binding domain of endonuclease III Y11_RS11060 PF04362 Bacterial Fe(2+) trafficking Y11_RS11065 PF01464 Transglycosylase SLT domain Y11_RS11065 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Y11_RS11075 PF01276 Orn/Lys/Arg decarboxylase, major domain Y11_RS11075 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y11_RS11075 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y11_RS11090 PF00589 Phage integrase family Y11_RS11110 PF12759 InsA C-terminal domain Y11_RS11110 PF03811 InsA N-terminal domain Y11_RS11115 PF03400 IS1 transposase Y11_RS11135 PF13520 Amino acid permease Y11_RS11140 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y11_RS11140 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y11_RS11140 PF01276 Orn/Lys/Arg decarboxylase, major domain Y11_RS11150 PF04632 Fusaric acid resistance protein family Y11_RS11155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_RS11155 PF00529 HlyD membrane-fusion protein of T1SS Y11_RS11175 PF00557 Metallopeptidase family M24 Y11_RS11180 PF00005 ABC transporter Y11_RS11185 PF01032 FecCD transport family Y11_RS11190 PF01032 FecCD transport family Y11_RS11195 PF01497 Periplasmic binding protein Y11_RS11210 PF00892 EamA-like transporter family Y11_RS11215 PF00392 Bacterial regulatory proteins, gntR family Y11_RS11215 PF00155 Aminotransferase class I and II Y11_RS11225 PF07690 Major Facilitator Superfamily Y11_RS11225 PF00083 Sugar (and other) transporter Y11_RS11230 PF00356 Bacterial regulatory proteins, lacI family Y11_RS11235 PF01156 Inosine-uridine preferring nucleoside hydrolase Y11_RS11240 PF02690 Na+/Pi-cotransporter Y11_RS11255 PF08946 Osmosensory transporter coiled coil Y11_RS11255 PF00083 Sugar (and other) transporter Y11_RS11270 PF13533 Biotin-lipoyl like Y11_RS11275 PF08447 PAS fold Y11_RS11275 PF08448 PAS fold Y11_RS11275 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS11275 PF00563 EAL domain Y11_RS11290 PF02110 Hydroxyethylthiazole kinase family Y11_RS11295 PF13784 Fic/DOC family N-terminal Y11_RS11295 PF02661 Fic/DOC family Y11_RS11300 PF07503 HypF finger Y11_RS11300 PF01300 Telomere recombination Y11_RS11300 PF17788 HypF Kae1-like domain Y11_RS11300 PF00708 Acylphosphatase Y11_RS11305 PF00586 AIR synthase related protein, N-terminal domain Y11_RS11305 PF02769 AIR synthase related protein, C-terminal domain Y11_RS11310 PF01924 Hydrogenase formation hypA family Y11_RS11315 PF01455 HupF/HypC family Y11_RS11320 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y11_RS11325 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Y11_RS11330 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE Y11_RS11335 PF01750 Hydrogenase maturation protease Y11_RS11340 PF00374 Nickel-dependent hydrogenase Y11_RS11345 PF03916 Polysulphide reductase, NrfD Y11_RS11350 PF13247 4Fe-4S dicluster domain Y11_RS11355 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Y11_RS11355 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Y11_RS11360 PF05433 Glycine zipper 2TM domain Y11_RS11365 PF13677 Membrane MotB of proton-channel complex MotA/MotB Y11_RS11365 PF00691 OmpA family Y11_RS11370 PF01618 MotA/TolQ/ExbB proton channel family Y11_RS11375 PF04545 Sigma-70, region 4 Y11_RS11375 PF04542 Sigma-70 region 2 Y11_RS11395 PF02561 Flagellar protein FliS Y11_RS11400 PF07196 Flagellin hook IN motif Y11_RS11400 PF07195 Flagellar hook-associated protein 2 C-terminus Y11_RS11400 PF02465 Flagellar hook-associated protein 2 N-terminus Y11_RS11405 PF00700 Bacterial flagellin C-terminal helical region Y11_RS11405 PF00669 Bacterial flagellin N-terminal helical region Y11_RS11410 PF00486 Transcriptional regulatory protein, C terminal Y11_RS11410 PF18500 CadC C-terminal domain 1 Y11_RS11450 PF02107 Flagellar L-ring protein Y11_RS11455 PF00460 Flagella basal body rod protein Y11_RS11455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_RS11460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_RS11460 PF00460 Flagella basal body rod protein Y11_RS11465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_RS11465 PF00460 Flagella basal body rod protein Y11_RS11465 PF07559 Flagellar basal body protein FlaE Y11_RS11470 PF13861 FlgD Tudor-like domain Y11_RS11470 PF03963 Flagellar hook capping protein - N-terminal region Y11_RS11470 PF13860 FlgD Ig-like domain Y11_RS11475 PF00460 Flagella basal body rod protein Y11_RS11475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_RS11480 PF00460 Flagella basal body rod protein Y11_RS11500 PF01548 Transposase Y11_RS11500 PF02371 Transposase IS116/IS110/IS902 family Y11_RS11510 PF00665 Integrase core domain Y11_RS11510 PF13276 HTH-like domain Y11_RS11510 PF13333 Integrase core domain Y11_RS11520 PF12833 Helix-turn-helix domain Y11_RS11525 PF00005 ABC transporter Y11_RS11525 PF02687 FtsX-like permease family Y11_RS11525 PF12704 MacB-like periplasmic core domain Y11_RS11545 PF01527 Transposase Y11_RS11550 PF12833 Helix-turn-helix domain Y11_RS11560 PF02586 SOS response associated peptidase (SRAP) Y11_RS11565 PF00873 AcrB/AcrD/AcrF family Y11_RS11570 PF13532 2OG-Fe(II) oxygenase superfamily Y11_RS11595 PF13629 Pilus formation protein N terminal region Y11_RS11595 PF04972 BON domain Y11_RS11595 PF00263 Bacterial type II and III secretion system protein Y11_RS11645 PF02472 Biopolymer transport protein ExbD/TolR Y11_RS11650 PF01618 MotA/TolQ/ExbB proton channel family Y11_RS11655 PF01053 Cys/Met metabolism PLP-dependent enzyme Y11_RS11660 PF09335 SNARE associated Golgi protein Y11_RS11665 PF12833 Helix-turn-helix domain Y11_RS11665 PF06719 AraC-type transcriptional regulator N-terminus Y11_RS11670 PF00465 Iron-containing alcohol dehydrogenase Y11_RS11675 PF00248 Aldo/keto reductase family Y11_RS11680 PF08497 Radical SAM N-terminal Y11_RS11680 PF11842 Domain of unknown function (DUF3362) Y11_RS11680 PF04055 Radical SAM superfamily Y11_RS11685 PF07732 Multicopper oxidase Y11_RS11685 PF07731 Multicopper oxidase Y11_RS11690 PF01553 Acyltransferase Y11_RS11695 PF00521 DNA gyrase/topoisomerase IV, subunit A Y11_RS11695 PF03989 DNA gyrase C-terminal domain, beta-propeller Y11_RS11700 PF02525 Flavodoxin-like fold Y11_RS11705 PF03992 Antibiotic biosynthesis monooxygenase Y11_RS11710 PF03466 LysR substrate binding domain Y11_RS11710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS11715 PF00204 DNA gyrase B Y11_RS11715 PF00986 DNA gyrase B subunit, carboxyl terminus Y11_RS11715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS11715 PF01751 Toprim domain Y11_RS11720 PF05728 Uncharacterised protein family (UPF0227) Y11_RS11725 PF00149 Calcineurin-like phosphoesterase Y11_RS11730 PF06853 Protein of unknown function (DUF1249) Y11_RS11735 PF00293 NUDIX domain Y11_RS11740 PF02321 Outer membrane efflux protein Y11_RS11745 PF06693 Protein of unknown function (DUF1190) Y11_RS11750 PF03738 Glutathionylspermidine synthase preATP-grasp Y11_RS11755 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Y11_RS11760 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Y11_RS11765 PF04380 Membrane fusogenic activity Y11_RS11770 PF13520 Amino acid permease Y11_RS11775 PF00294 pfkB family carbohydrate kinase Y11_RS11775 PF01467 Cytidylyltransferase-like Y11_RS11780 PF08335 GlnD PII-uridylyltransferase Y11_RS11780 PF03710 Glutamate-ammonia ligase adenylyltransferase Y11_RS11785 PF01928 CYTH domain Y11_RS11790 PF08239 Bacterial SH3 domain Y11_RS11795 PF01743 Poly A polymerase head domain Y11_RS11795 PF12627 Probable RNA and SrmB- binding site of polymerase A Y11_RS11795 PF01966 HD domain Y11_RS11800 PF02673 Bacitracin resistance protein BacA Y11_RS11805 PF02152 Dihydroneopterin aldolase Y11_RS11810 PF02660 Glycerol-3-phosphate acyltransferase Y11_RS11815 PF00814 Glycoprotease family Y11_RS11820 PF01165 Ribosomal protein S21 Y11_RS11825 PF10410 DnaB-helicase binding domain of primase Y11_RS11825 PF08278 DNA primase DnaG DnaB-binding Y11_RS11825 PF01807 CHC2 zinc finger Y11_RS11825 PF08275 DNA primase catalytic core, N-terminal domain Y11_RS11830 PF04546 Sigma-70, non-essential region Y11_RS11830 PF04545 Sigma-70, region 4 Y11_RS11830 PF03979 Sigma-70 factor, region 1.1 Y11_RS11830 PF00140 Sigma-70 factor, region 1.2 Y11_RS11830 PF04542 Sigma-70 region 2 Y11_RS11830 PF04539 Sigma-70 region 3 Y11_RS12005 PF05840 Bacteriophage replication gene A protein (GPA) Y11_RS12030 PF06892 Phage regulatory protein CII (CP76) Y11_RS12035 PF07022 Bacteriophage CI repressor helix-turn-helix domain Y11_RS12035 PF16452 Bacteriophage CI repressor C-terminal domain Y11_RS12040 PF02899 Phage integrase, N-terminal SAM-like domain Y11_RS12040 PF00589 Phage integrase family Y11_RS12045 PF07075 Protein of unknown function (DUF1343) Y11_RS12055 PF01915 Glycosyl hydrolase family 3 C-terminal domain Y11_RS12055 PF00933 Glycosyl hydrolase family 3 N terminal domain Y11_RS12060 PF01380 SIS domain Y11_RS12060 PF01418 Helix-turn-helix domain, rpiR family Y11_RS12065 PF13580 SIS domain Y11_RS12070 PF02378 Phosphotransferase system, EIIC Y11_RS12070 PF00367 phosphotransferase system, EIIB Y11_RS12075 PF04960 Glutaminase Y11_RS12080 PF13520 Amino acid permease Y11_RS12095 PF03729 Short repeat of unknown function (DUF308) Y11_RS12100 PF00892 EamA-like transporter family Y11_RS12105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y11_RS12105 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_RS12115 PF01548 Transposase Y11_RS12115 PF02371 Transposase IS116/IS110/IS902 family Y11_RS12120 PF05175 Methyltransferase small domain Y11_RS12125 PF03797 Autotransporter beta-domain Y11_RS12140 PF01863 Protein of unknown function DUF45 Y11_RS12145 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y11_RS12155 PF03741 Integral membrane protein TerC family Y11_RS12160 PF00375 Sodium:dicarboxylate symporter family Y11_RS12165 PF10688 Bacterial inner membrane protein Y11_RS12170 PF08666 SAF domain Y11_RS12170 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Y11_RS12175 PF01232 Mannitol dehydrogenase Rossmann domain Y11_RS12175 PF08125 Mannitol dehydrogenase C-terminal domain Y11_RS12180 PF02614 Glucuronate isomerase Y11_RS12185 PF07690 Major Facilitator Superfamily Y11_RS12190 PF00392 Bacterial regulatory proteins, gntR family Y11_RS12190 PF07729 FCD domain Y11_RS12200 PF09335 SNARE associated Golgi protein Y11_RS12205 PF13721 SecD export protein N-terminal TM region Y11_RS12215 PF05957 Bacterial protein of unknown function (DUF883) Y11_RS12220 PF07332 Putative Actinobacterial Holin-X, holin superfamily III Y11_RS12225 PF13997 YqjK-like protein Y11_RS12230 PF07681 DoxX Y11_RS12235 PF13409 Glutathione S-transferase, N-terminal domain Y11_RS12240 PF03466 LysR substrate binding domain Y11_RS12240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS12245 PF17954 Quercetinase C-terminal cupin domain Y11_RS12245 PF02678 Pirin Y11_RS12255 PF00248 Aldo/keto reductase family Y11_RS12260 PF03466 LysR substrate binding domain Y11_RS12260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS12270 PF13953 PapC C-terminal domain Y11_RS12270 PF13954 PapC N-terminal domain Y11_RS12270 PF00577 Outer membrane usher protein Y11_RS12275 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_RS12275 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_RS12290 PF01381 Helix-turn-helix Y11_RS12300 PF00145 C-5 cytosine-specific DNA methylase Y11_RS12305 PF01695 IstB-like ATP binding protein Y11_RS12310 PF00665 Integrase core domain Y11_RS12320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_RS12325 PF04348 LppC putative lipoprotein Y11_RS12330 PF02021 Uncharacterised protein family UPF0102 Y11_RS12335 PF13580 SIS domain Y11_RS12340 PF04972 BON domain Y11_RS12345 PF02371 Transposase IS116/IS110/IS902 family Y11_RS12345 PF01548 Transposase Y11_RS12350 PF00912 Transglycosylase Y11_RS12360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS12360 PF18415 Histidine kinase receptor ArcB trans-membrane domain Y11_RS12360 PF01627 Hpt domain Y11_RS12360 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS12360 PF00989 PAS fold Y11_RS12360 PF00072 Response regulator receiver domain Y11_RS12365 PF16199 Radical_SAM C-terminal domain Y11_RS12365 PF04055 Radical SAM superfamily Y11_RS12370 PF04898 Glutamate synthase central domain Y11_RS12370 PF00310 Glutamine amidotransferases class-II Y11_RS12370 PF01493 GXGXG motif Y11_RS12370 PF01645 Conserved region in glutamate synthase Y11_RS12375 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_RS12375 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Y11_RS12390 PF04386 Stringent starvation protein B Y11_RS12395 PF00043 Glutathione S-transferase, C-terminal domain Y11_RS12395 PF02798 Glutathione S-transferase, N-terminal domain Y11_RS12400 PF00380 Ribosomal protein S9/S16 Y11_RS12405 PF00572 Ribosomal protein L13 Y11_RS12410 PF03969 AFG1-like ATPase Y11_RS12415 PF06295 Protein of unknown function (DUF1043) Y11_RS12420 PF13180 PDZ domain Y11_RS12420 PF00595 PDZ domain Y11_RS12425 PF13180 PDZ domain Y11_RS12430 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Y11_RS12435 PF01722 BolA-like protein Y11_RS12440 PF13466 STAS domain Y11_RS12445 PF05494 MlaC protein Y11_RS12450 PF02470 MlaD protein Y11_RS12455 PF02405 Permease MlaE Y11_RS12460 PF00005 ABC transporter Y11_RS12465 PF01699 Sodium/calcium exchanger protein Y11_RS12470 PF00571 CBS domain Y11_RS12470 PF01380 SIS domain Y11_RS12480 PF06835 Lipopolysaccharide-assembly, LptC-related Y11_RS12485 PF03968 OstA-like protein Y11_RS12490 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y11_RS12490 PF00005 ABC transporter Y11_RS12495 PF00309 Sigma-54 factor, Activator interacting domain (AID) Y11_RS12495 PF04963 Sigma-54 factor, core binding domain Y11_RS12495 PF04552 Sigma-54, DNA binding domain Y11_RS12500 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Y11_RS12505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_RS12510 PF03668 P-loop ATPase protein family Y11_RS12515 PF00381 PTS HPr component phosphorylation site Y11_RS12520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y11_RS12520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y11_RS12525 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain Y11_RS12525 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain Y11_RS12530 PF01042 Endoribonuclease L-PSP Y11_RS12535 PF14403 Circularly permuted ATP-grasp type 2 Y11_RS12540 PF14403 Circularly permuted ATP-grasp type 2 Y11_RS12540 PF04168 A predicted alpha-helical domain with a conserved ER motif. Y11_RS12555 PF11941 Domain of unknown function (DUF3459) Y11_RS12555 PF00128 Alpha amylase, catalytic domain Y11_RS12560 PF02378 Phosphotransferase system, EIIC Y11_RS12560 PF00367 phosphotransferase system, EIIB Y11_RS12565 PF00356 Bacterial regulatory proteins, lacI family Y11_RS12570 PF00690 Cation transporter/ATPase, N-terminus Y11_RS12570 PF00689 Cation transporting ATPase, C-terminus Y11_RS12575 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB Y11_RS12580 PF01381 Helix-turn-helix Y11_RS12585 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_RS12585 PF00874 PRD domain Y11_RS12585 PF05043 Mga helix-turn-helix domain Y11_RS12585 PF08279 HTH domain Y11_RS12590 PF10282 Lactonase, 7-bladed beta-propeller Y11_RS12595 PF07071 KDGP aldolase Y11_RS12600 PF03841 L-seryl-tRNA selenium transferase Y11_RS12605 PF01979 Amidohydrolase family Y11_RS12635 PF14760 Rnk N-terminus Y11_RS12635 PF01272 Transcription elongation factor, GreA/GreB, C-term Y11_RS12640 PF07361 Cytochrome b562 Y11_RS12645 PF01548 Transposase Y11_RS12645 PF02371 Transposase IS116/IS110/IS902 family Y11_RS12650 PF01523 Putative modulator of DNA gyrase Y11_RS12655 PF04751 Protein of unknown function (DUF615) Y11_RS12660 PF01337 Barstar (barnase inhibitor) Y11_RS12670 PF00171 Aldehyde dehydrogenase family Y11_RS12675 PF04632 Fusaric acid resistance protein family Y11_RS12680 PF13533 Biotin-lipoyl like Y11_RS12685 PF07869 Protein of unknown function (DUF1656) Y11_RS12690 PF03466 LysR substrate binding domain Y11_RS12690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS12710 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain Y11_RS12710 PF18413 Neuraminidase-like domain Y11_RS12715 PF12256 Insecticide toxin TcdB middle/N-terminal region Y11_RS12715 PF03534 Salmonella virulence plasmid 65kDa B protein Y11_RS12715 PF12255 Insecticide toxin TcdB middle/C-terminal region Y11_RS12720 PF12255 Insecticide toxin TcdB middle/C-terminal region Y11_RS12720 PF03534 Salmonella virulence plasmid 65kDa B protein Y11_RS12720 PF12256 Insecticide toxin TcdB middle/N-terminal region Y11_RS12740 PF14431 YwqJ-like deaminase Y11_RS12740 PF18807 Tripartite Tc toxins repeat Y11_RS12755 PF01523 Putative modulator of DNA gyrase Y11_RS12760 PF00795 Carbon-nitrogen hydrolase Y11_RS12765 PF13116 Protein of unknown function Y11_RS12765 PF13502 AsmA-like C-terminal region Y11_RS12770 PF10150 Ribonuclease E/G family Y11_RS12770 PF00575 S1 RNA binding domain Y11_RS12775 PF02545 Maf-like protein Y11_RS12780 PF04093 rod shape-determining protein MreD Y11_RS12785 PF04085 rod shape-determining protein MreC Y11_RS12795 PF00563 EAL domain Y11_RS12795 PF17157 Gammaproteobacterial periplasmic sensor domain Y11_RS12795 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS12800 PF08240 Alcohol dehydrogenase GroES-like domain Y11_RS12800 PF00107 Zinc-binding dehydrogenase Y11_RS12805 PF00174 Oxidoreductase molybdopterin binding domain Y11_RS12810 PF01794 Ferric reductase like transmembrane component Y11_RS12815 PF01220 Dehydroquinase class II Y11_RS12820 PF00364 Biotin-requiring enzyme Y11_RS12825 PF00289 Biotin carboxylase, N-terminal domain Y11_RS12825 PF02785 Biotin carboxylase C-terminal domain Y11_RS12825 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y11_RS12830 PF06196 Protein of unknown function (DUF997) Y11_RS12835 PF00474 Sodium:solute symporter family Y11_RS12845 PF01207 Dihydrouridine synthase (Dus) Y11_RS12850 PF02954 Bacterial regulatory protein, Fis family Y11_RS12855 PF00072 Response regulator receiver domain Y11_RS12855 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS12860 PF05433 Glycine zipper 2TM domain Y11_RS12865 PF00313 'Cold-shock' DNA-binding domain Y11_RS12870 PF00313 'Cold-shock' DNA-binding domain Y11_RS12875 PF00939 Sodium:sulfate symporter transmembrane region Y11_RS12880 PF03279 Bacterial lipid A biosynthesis acyltransferase Y11_RS12885 PF01548 Transposase Y11_RS12885 PF02371 Transposase IS116/IS110/IS902 family Y11_RS12895 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_RS12900 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS12905 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS12910 PF00005 ABC transporter Y11_RS12920 PF03788 LrgA family Y11_RS12925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS12925 PF03466 LysR substrate binding domain Y11_RS12930 PF00999 Sodium/hydrogen exchanger family Y11_RS12935 PF00860 Permease family Y11_RS12950 PF13657 HipA N-terminal domain Y11_RS12950 PF07804 HipA-like C-terminal domain Y11_RS12955 PF00436 Single-strand binding protein family Y11_RS12960 PF00005 ABC transporter Y11_RS12960 PF17755 UvrA DNA-binding domain Y11_RS12960 PF17760 UvrA interaction domain Y11_RS12965 PF04237 YjbR Y11_RS12970 PF00155 Aminotransferase class I and II Y11_RS12975 PF00842 Alanine racemase, C-terminal domain Y11_RS12975 PF01168 Alanine racemase, N-terminal domain Y11_RS12980 PF03796 DnaB-like helicase C terminal domain Y11_RS12980 PF00772 DnaB-like helicase N terminal domain Y11_RS12985 PF00107 Zinc-binding dehydrogenase Y11_RS12985 PF08240 Alcohol dehydrogenase GroES-like domain Y11_RS12995 PF09583 Phage shock protein G (Phageshock_PspG) Y11_RS13000 PF01207 Dihydrouridine synthase (Dus) Y11_RS13005 PF01757 Acyltransferase family Y11_RS13010 PF01475 Ferric uptake regulator family Y11_RS13015 PF05532 CsbD-like Y11_RS13020 PF01726 LexA DNA binding domain Y11_RS13020 PF00717 Peptidase S24-like Y11_RS13025 PF01219 Prokaryotic diacylglycerol kinase Y11_RS13030 PF01553 Acyltransferase Y11_RS13035 PF01040 UbiA prenyltransferase family Y11_RS13040 PF04345 Chorismate lyase Y11_RS13050 PF07148 Maltose operon periplasmic protein precursor (MalM) Y11_RS13055 PF02264 LamB porin Y11_RS13060 PF17912 MalK OB fold domain Y11_RS13060 PF00005 ABC transporter Y11_RS13065 PF01547 Bacterial extracellular solute-binding protein Y11_RS13070 PF14785 Maltose transport system permease protein MalF P2 domain Y11_RS13070 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS13075 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS13080 PF06146 Phosphate-starvation-inducible E Y11_RS13085 PF00342 Phosphoglucose isomerase Y11_RS13090 PF00696 Amino acid kinase family Y11_RS13090 PF01842 ACT domain Y11_RS13095 PF01758 Sodium Bile acid symporter family Y11_RS13100 PF08479 POTRA domain, ShlB-type Y11_RS13100 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y11_RS13100 PF17287 POTRA domain Y11_RS13105 PF13332 Hemagglutinin repeat Y11_RS13105 PF05860 haemagglutination activity domain Y11_RS13110 PF02310 B12 binding domain Y11_RS13110 PF02607 B12 binding domain Y11_RS13110 PF02965 Vitamin B12 dependent methionine synthase, activation domain Y11_RS13110 PF00809 Pterin binding enzyme Y11_RS13110 PF02574 Homocysteine S-methyltransferase Y11_RS13115 PF09339 IclR helix-turn-helix domain Y11_RS13115 PF01614 Bacterial transcriptional regulator Y11_RS13120 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Y11_RS13125 PF00463 Isocitrate lyase family Y11_RS13130 PF01274 Malate synthase Y11_RS13135 PF04204 Homoserine O-succinyltransferase Y11_RS13170 PF01177 Asp/Glu/Hydantoin racemase Y11_RS13175 PF07715 TonB-dependent Receptor Plug Domain Y11_RS13175 PF00593 TonB dependent receptor Y11_RS13180 PF05958 tRNA (Uracil-5-)-methyltransferase Y11_RS13185 PF07226 Protein of unknown function (DUF1422) Y11_RS13190 PF00440 Bacterial regulatory proteins, tetR family Y11_RS13195 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_RS13195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y11_RS13200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS13200 PF03466 LysR substrate binding domain Y11_RS13205 PF08534 Redoxin Y11_RS13205 PF00462 Glutaredoxin Y11_RS13210 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_RS13210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y11_RS13220 PF00529 HlyD membrane-fusion protein of T1SS Y11_RS13225 PF00664 ABC transporter transmembrane region Y11_RS13225 PF00005 ABC transporter Y11_RS13250 PF00593 TonB dependent receptor Y11_RS13250 PF07715 TonB-dependent Receptor Plug Domain Y11_RS13255 PF00206 Lyase Y11_RS13255 PF14698 Argininosuccinate lyase C-terminal Y11_RS13260 PF00696 Amino acid kinase family Y11_RS13265 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y11_RS13265 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y11_RS13270 PF07687 Peptidase dimerisation domain Y11_RS13270 PF01546 Peptidase family M20/M25/M40 Y11_RS13275 PF00311 Phosphoenolpyruvate carboxylase Y11_RS13280 PF02219 Methylenetetrahydrofolate reductase Y11_RS13285 PF00696 Amino acid kinase family Y11_RS13285 PF00742 Homoserine dehydrogenase Y11_RS13285 PF03447 Homoserine dehydrogenase, NAD binding domain Y11_RS13290 PF01053 Cys/Met metabolism PLP-dependent enzyme Y11_RS13295 PF01340 Met Apo-repressor, MetJ Y11_RS13300 PF01197 Ribosomal protein L31 Y11_RS13305 PF00270 DEAD/DEAH box helicase Y11_RS13305 PF18074 Primosomal protein N C-terminal domain Y11_RS13305 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Y11_RS13305 PF17764 3′ DNA-binding domain (3′BD) Y11_RS13305 PF00271 Helicase conserved C-terminal domain Y11_RS13310 PF00356 Bacterial regulatory proteins, lacI family Y11_RS13315 PF05036 Sporulation related domain Y11_RS13320 PF00227 Proteasome subunit Y11_RS13325 PF00004 ATPase family associated with various cellular activities (AAA) Y11_RS13325 PF07724 AAA domain (Cdc48 subfamily) Y11_RS13325 PF10431 C-terminal, D2-small domain, of ClpB protein Y11_RS13330 PF01040 UbiA prenyltransferase family Y11_RS13335 PF03737 Aldolase/RraA Y11_RS13340 PF06005 Cell division protein ZapB Y11_RS13350 PF00230 Major intrinsic protein Y11_RS13355 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y11_RS13355 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y11_RS13360 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Y11_RS13365 PF02371 Transposase IS116/IS110/IS902 family Y11_RS13365 PF01548 Transposase Y11_RS13370 PF07690 Major Facilitator Superfamily Y11_RS13385 PF00175 Oxidoreductase NAD-binding domain Y11_RS13385 PF00970 Oxidoreductase FAD-binding domain Y11_RS13390 PF05656 Protein of unknown function (DUF805) Y11_RS13395 PF07305 Protein of unknown function (DUF1454) Y11_RS13400 PF00121 Triosephosphate isomerase Y11_RS13415 PF00365 Phosphofructokinase Y11_RS13420 PF16916 Dimerisation domain of Zinc Transporter Y11_RS13420 PF01545 Cation efflux family Y11_RS13495 PF01695 IstB-like ATP binding protein Y11_RS13525 PF07516 SecA Wing and Scaffold domain Y11_RS13525 PF01043 SecA preprotein cross-linking domain Y11_RS13525 PF07517 SecA DEAD-like domain Y11_RS13525 PF00271 Helicase conserved C-terminal domain Y11_RS13525 PF02810 SEC-C motif Y11_RS13530 PF05840 Bacteriophage replication gene A protein (GPA) Y11_RS13550 PF02899 Phage integrase, N-terminal SAM-like domain Y11_RS13550 PF00589 Phage integrase family Y11_RS13555 PF07813 LTXXQ motif family protein Y11_RS13560 PF00486 Transcriptional regulatory protein, C terminal Y11_RS13560 PF00072 Response regulator receiver domain Y11_RS13565 PF00672 HAMP domain Y11_RS13565 PF16527 Two-component sensor protein CpxA, periplasmic domain Y11_RS13565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS13565 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS13570 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Y11_RS13570 PF12833 Helix-turn-helix domain Y11_RS13570 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y11_RS13570 PF02805 Metal binding domain of Ada Y11_RS13575 PF00588 SpoU rRNA Methylase family Y11_RS13580 PF06426 Serine acetyltransferase, N-terminal Y11_RS13580 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_RS13585 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Y11_RS13585 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Y11_RS13590 PF02556 Preprotein translocase subunit SecB Y11_RS13595 PF00462 Glutaredoxin Y11_RS13600 PF00581 Rhodanese-like domain Y11_RS13605 PF01676 Metalloenzyme superfamily Y11_RS13605 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Y11_RS13610 PF01551 Peptidase family M23 Y11_RS13615 PF04748 Divergent polysaccharide deacetylase Y11_RS13630 PF08240 Alcohol dehydrogenase GroES-like domain Y11_RS13630 PF00107 Zinc-binding dehydrogenase Y11_RS13635 PF00155 Aminotransferase class I and II Y11_RS13640 PF01370 NAD dependent epimerase/dehydratase family Y11_RS13645 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y11_RS13650 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y11_RS13655 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Y11_RS13660 PF00535 Glycosyl transferase family 2 Y11_RS13665 PF01467 Cytidylyltransferase-like Y11_RS13670 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Y11_RS13670 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Y11_RS13670 PF06827 Zinc finger found in FPG and IleRS Y11_RS13675 PF00471 Ribosomal protein L33 Y11_RS13680 PF00830 Ribosomal L28 family Y11_RS13685 PF04002 RadC-like JAB domain Y11_RS13690 PF04127 DNA / pantothenate metabolism flavoprotein Y11_RS13690 PF02441 Flavoprotein Y11_RS13695 PF00692 dUTPase Y11_RS13700 PF00440 Bacterial regulatory proteins, tetR family Y11_RS13710 PF00156 Phosphoribosyl transferase domain Y11_RS13715 PF01138 3' exoribonuclease family, domain 1 Y11_RS13715 PF03725 3' exoribonuclease family, domain 2 Y11_RS13720 PF08340 Domain of unknown function (DUF1732) Y11_RS13720 PF03755 YicC-like family, N-terminal region Y11_RS13730 PF13426 PAS domain Y11_RS13730 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS13730 PF00563 EAL domain Y11_RS13735 PF00378 Enoyl-CoA hydratase/isomerase Y11_RS13740 PF01773 Na+ dependent nucleoside transporter N-terminus Y11_RS13740 PF07670 Nucleoside recognition Y11_RS13740 PF07662 Na+ dependent nucleoside transporter C-terminus Y11_RS13750 PF03458 UPF0126 domain Y11_RS13755 PF01653 NAD-dependent DNA ligase adenylation domain Y11_RS13755 PF03120 NAD-dependent DNA ligase OB-fold domain Y11_RS13760 PF00625 Guanylate kinase Y11_RS13765 PF01192 RNA polymerase Rpb6 Y11_RS13770 PF04607 Region found in RelA / SpoT proteins Y11_RS13770 PF02824 TGS domain Y11_RS13770 PF13291 ACT domain Y11_RS13775 PF00588 SpoU rRNA Methylase family Y11_RS13775 PF12105 SpoU, rRNA methylase, C-terminal Y11_RS13780 PF17191 RecG wedge domain Y11_RS13780 PF00270 DEAD/DEAH box helicase Y11_RS13780 PF00271 Helicase conserved C-terminal domain Y11_RS13790 PF03616 Sodium/glutamate symporter Y11_RS13795 PF00860 Permease family Y11_RS13800 PF05170 AsmA family Y11_RS13820 PF13693 Winged helix-turn-helix DNA-binding Y11_RS13825 PF00583 Acetyltransferase (GNAT) family Y11_RS13825 PF09500 Putative thioesterase (yiiD_Cterm) Y11_RS13830 PF02580 D-Tyr-tRNA(Tyr) deacylase Y11_RS13835 PF03631 Virulence factor BrkB Y11_RS13840 PF13419 Haloacid dehalogenase-like hydrolase Y11_RS13845 PF03144 Elongation factor Tu domain 2 Y11_RS13845 PF00009 Elongation factor Tu GTP binding domain Y11_RS13845 PF00679 Elongation factor G C-terminus Y11_RS13850 PF00120 Glutamine synthetase, catalytic domain Y11_RS13850 PF03951 Glutamine synthetase, beta-Grasp domain Y11_RS13855 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS13855 PF00989 PAS fold Y11_RS13855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS13860 PF02954 Bacterial regulatory protein, Fis family Y11_RS13860 PF00072 Response regulator receiver domain Y11_RS13860 PF00158 Sigma-54 interaction domain Y11_RS13865 PF06969 HemN C-terminal domain Y11_RS13865 PF04055 Radical SAM superfamily Y11_RS13870 PF04220 Der GTPase activator (YihI) Y11_RS13875 PF01926 50S ribosome-binding GTPase Y11_RS13880 PF01367 5'-3' exonuclease, C-terminal SAM fold Y11_RS13880 PF01612 3'-5' exonuclease Y11_RS13880 PF00476 DNA polymerase family A Y11_RS13880 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Y11_RS13885 PF01323 DSBA-like thioredoxin domain Y11_RS13890 PF01636 Phosphotransferase enzyme family Y11_RS13895 PF06288 Protein of unknown function (DUF1040) Y11_RS13900 PF12804 MobA-like NTP transferase domain Y11_RS13905 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Y11_RS13910 PF13333 Integrase core domain Y11_RS13910 PF13276 HTH-like domain Y11_RS13910 PF00665 Integrase core domain Y11_RS13940 PF07729 FCD domain Y11_RS13940 PF00392 Bacterial regulatory proteins, gntR family Y11_RS13945 PF07690 Major Facilitator Superfamily Y11_RS13950 PF00356 Bacterial regulatory proteins, lacI family Y11_RS13955 PF00294 pfkB family carbohydrate kinase Y11_RS13960 PF13407 Periplasmic binding protein domain Y11_RS13965 PF02653 Branched-chain amino acid transport system / permease component Y11_RS13970 PF00005 ABC transporter Y11_RS13975 PF05025 RbsD / FucU transport protein family Y11_RS13980 PF02705 K+ potassium transporter Y11_RS13985 PF12592 Protein of unknown function (DUF3763) Y11_RS13985 PF17868 AAA lid domain Y11_RS13985 PF07728 AAA domain (dynein-related subfamily) Y11_RS13990 PF05762 VWA domain containing CoxE-like protein Y11_RS14000 PF03590 Aspartate-ammonia ligase Y11_RS14005 PF01037 Lrp/AsnC ligand binding domain Y11_RS14010 PF00258 Flavodoxin Y11_RS14015 PF13932 GidA associated domain Y11_RS14015 PF01134 Glucose inhibited division protein A Y11_RS14020 PF02527 rRNA small subunit methyltransferase G Y11_RS14025 PF03899 ATP synthase I chain Y11_RS14030 PF00119 ATP synthase A chain Y11_RS14035 PF00137 ATP synthase subunit C Y11_RS14040 PF00430 ATP synthase B/B' CF(0) Y11_RS14045 PF00213 ATP synthase delta (OSCP) subunit Y11_RS14050 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y11_RS14050 PF00306 ATP synthase alpha/beta chain, C terminal domain Y11_RS14050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y11_RS14055 PF00231 ATP synthase Y11_RS14060 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y11_RS14060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y11_RS14065 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Y11_RS14065 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Y11_RS14070 PF12804 MobA-like NTP transferase domain Y11_RS14070 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_RS14075 PF01380 SIS domain Y11_RS14080 PF12849 PBP superfamily domain Y11_RS14085 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS14090 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS14095 PF00005 ABC transporter Y11_RS14100 PF01895 PhoU domain Y11_RS14110 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_RS14115 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS14120 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS14125 PF13419 Haloacid dehalogenase-like hydrolase Y11_RS14130 PF00860 Permease family Y11_RS14140 PF00196 Bacterial regulatory proteins, luxR family Y11_RS14140 PF00072 Response regulator receiver domain Y11_RS14145 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS14145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS14150 PF03358 NADPH-dependent FMN reductase Y11_RS14155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_RS14155 PF00672 HAMP domain Y11_RS14155 PF02203 Tar ligand binding domain homologue Y11_RS14160 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS14165 PF09383 NIL domain Y11_RS14165 PF00005 ABC transporter Y11_RS14175 PF07055 Enoyl reductase FAD binding domain Y11_RS14175 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Y11_RS14175 PF12241 Trans-2-enoyl-CoA reductase catalytic region Y11_RS14180 PF12631 MnmE helical domain Y11_RS14180 PF01926 50S ribosome-binding GTPase Y11_RS14180 PF10396 GTP-binding protein TrmE N-terminus Y11_RS14185 PF14849 YidC periplasmic domain Y11_RS14185 PF02096 60Kd inner membrane protein Y11_RS14190 PF00825 Ribonuclease P Y11_RS14195 PF00468 Ribosomal protein L34 Y11_RS14200 PF11638 DnaA N-terminal domain Y11_RS14200 PF08299 Bacterial dnaA protein helix-turn-helix Y11_RS14200 PF00308 Bacterial dnaA protein Y11_RS14205 PF02767 DNA polymerase III beta subunit, central domain Y11_RS14205 PF02768 DNA polymerase III beta subunit, C-terminal domain Y11_RS14205 PF00712 DNA polymerase III beta subunit, N-terminal domain Y11_RS14210 PF02463 RecF/RecN/SMC N terminal domain Y11_RS14215 PF00986 DNA gyrase B subunit, carboxyl terminus Y11_RS14215 PF00204 DNA gyrase B Y11_RS14215 PF01751 Toprim domain Y11_RS14215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS14215 PF18053 DNA gyrase B subunit insert domain Y11_RS14225 PF02423 Ornithine cyclodeaminase/mu-crystallin family Y11_RS14235 PF07676 WD40-like Beta Propeller Repeat Y11_RS14235 PF12566 Protein of unknown function (DUF3748) Y11_RS14240 PF07119 Protein of unknown function (DUF1375) Y11_RS14245 PF00011 Hsp20/alpha crystallin family Y11_RS14250 PF00011 Hsp20/alpha crystallin family Y11_RS14260 PF02371 Transposase IS116/IS110/IS902 family Y11_RS14260 PF01548 Transposase Y11_RS14270 PF02080 TrkA-C domain Y11_RS14270 PF06826 Predicted Permease Membrane Region Y11_RS14275 PF00155 Aminotransferase class I and II Y11_RS14280 PF00128 Alpha amylase, catalytic domain Y11_RS14285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_RS14285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y11_RS14290 PF07690 Major Facilitator Superfamily Y11_RS14315 PF00583 Acetyltransferase (GNAT) family Y11_RS14320 PF03352 Methyladenine glycosylase Y11_RS14325 PF02091 Glycyl-tRNA synthetase alpha subunit Y11_RS14330 PF05746 DALR anticodon binding domain Y11_RS14330 PF02092 Glycyl-tRNA synthetase beta subunit Y11_RS14335 PF11254 Protein of unknown function (DUF3053) Y11_RS14340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_RS14340 PF02378 Phosphotransferase system, EIIC Y11_RS14340 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y11_RS14345 PF01232 Mannitol dehydrogenase Rossmann domain Y11_RS14345 PF08125 Mannitol dehydrogenase C-terminal domain Y11_RS14350 PF05068 Mannitol repressor Y11_RS14360 PF00392 Bacterial regulatory proteins, gntR family Y11_RS14360 PF00155 Aminotransferase class I and II Y11_RS14365 PF10928 Protein of unknown function (DUF2810) Y11_RS14370 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Y11_RS14375 PF01850 PIN domain Y11_RS14380 PF03473 MOSC domain Y11_RS14380 PF03475 3-alpha domain Y11_RS14385 PF00672 HAMP domain Y11_RS14385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_RS14385 PF02203 Tar ligand binding domain homologue Y11_RS14390 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Y11_RS14390 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Y11_RS14395 PF02634 FdhD/NarQ family Y11_RS14400 PF01568 Molydopterin dinucleotide binding domain Y11_RS14400 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS14400 PF00384 Molybdopterin oxidoreductase Y11_RS14405 PF00384 Molybdopterin oxidoreductase Y11_RS14405 PF01568 Molydopterin dinucleotide binding domain Y11_RS14405 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS14410 PF13247 4Fe-4S dicluster domain Y11_RS14410 PF09163 Formate dehydrogenase N, transmembrane Y11_RS14415 PF01292 Prokaryotic cytochrome b561 Y11_RS14420 PF04216 Protein involved in formate dehydrogenase formation Y11_RS14425 PF03841 L-seryl-tRNA selenium transferase Y11_RS14425 PF12390 Selenocysteine synthase N terminal Y11_RS14430 PF09106 Elongation factor SelB, winged helix Y11_RS14430 PF03144 Elongation factor Tu domain 2 Y11_RS14430 PF09107 Elongation factor SelB, winged helix Y11_RS14430 PF00009 Elongation factor Tu GTP binding domain Y11_RS14435 PF07690 Major Facilitator Superfamily Y11_RS14440 PF01757 Acyltransferase family Y11_RS14455 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_RS14455 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_RS14460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y11_RS14460 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y11_RS14470 PF13407 Periplasmic binding protein domain Y11_RS14475 PF00005 ABC transporter Y11_RS14480 PF02653 Branched-chain amino acid transport system / permease component Y11_RS14490 PF00589 Phage integrase family Y11_RS14490 PF13356 Arm DNA-binding domain Y11_RS14490 PF14659 Phage integrase, N-terminal SAM-like domain Y11_RS14510 PF00665 Integrase core domain Y11_RS14515 PF01695 IstB-like ATP binding protein Y11_RS14520 PF00324 Amino acid permease Y11_RS14525 PF00221 Aromatic amino acid lyase Y11_RS14530 PF01175 Urocanase Rossmann-like domain Y11_RS14530 PF17391 Urocanase N-terminal domain Y11_RS14530 PF17392 Urocanase C-terminal domain Y11_RS14540 PF13953 PapC C-terminal domain Y11_RS14540 PF13954 PapC N-terminal domain Y11_RS14540 PF00577 Outer membrane usher protein Y11_RS14545 PF01238 Phosphomannose isomerase type I Y11_RS14550 PF00232 Glycosyl hydrolase family 1 Y11_RS14565 PF02378 Phosphotransferase system, EIIC Y11_RS14570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y11_RS14575 PF02378 Phosphotransferase system, EIIC Y11_RS14580 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Y11_RS14585 PF00480 ROK family Y11_RS14590 PF00356 Bacterial regulatory proteins, lacI family Y11_RS14605 PF06755 CbtA_toxin of type IV toxin-antitoxin system Y11_RS14610 PF00872 Transposase, Mutator family Y11_RS14615 PF12146 Serine aminopeptidase, S33 Y11_RS14620 PF13332 Hemagglutinin repeat Y11_RS14620 PF05860 haemagglutination activity domain Y11_RS14620 PF13018 Extended Signal Peptide of Type V secretion system Y11_RS14620 PF04829 Pre-toxin domain with VENN motif Y11_RS14625 PF08479 POTRA domain, ShlB-type Y11_RS14625 PF17287 POTRA domain Y11_RS14625 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y11_RS14635 PF13018 Extended Signal Peptide of Type V secretion system Y11_RS14635 PF02661 Fic/DOC family Y11_RS14635 PF05860 haemagglutination activity domain Y11_RS14635 PF03543 Yersinia/Haemophilus virulence surface antigen Y11_RS14635 PF13332 Hemagglutinin repeat Y11_RS14650 PF07690 Major Facilitator Superfamily Y11_RS14655 PF05231 MASE1 Y11_RS14655 PF07730 Histidine kinase Y11_RS14655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS14660 PF00196 Bacterial regulatory proteins, luxR family Y11_RS14660 PF00072 Response regulator receiver domain Y11_RS14665 PF08019 Phosphoethanolamine transferase EptA/EptB Y11_RS14665 PF00884 Sulfatase Y11_RS14670 PF02566 OsmC-like protein Y11_RS14675 PF01548 Transposase Y11_RS14675 PF02371 Transposase IS116/IS110/IS902 family Y11_RS14680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_RS14685 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS14690 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS14690 PF12911 N-terminal TM domain of oligopeptide transport permease C Y11_RS14695 PF00005 ABC transporter Y11_RS14695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_RS14700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_RS14700 PF00005 ABC transporter Y11_RS14705 PF11658 Cellulose biosynthesis protein BcsG Y11_RS14710 PF11120 Cellulose biosynthesis protein BcsF Y11_RS14715 PF10995 Cellulose biosynthesis GIL Y11_RS14725 PF06564 Cellulose biosynthesis protein BcsQ Y11_RS14730 PF00535 Glycosyl transferase family 2 Y11_RS14730 PF03552 Cellulose synthase Y11_RS14730 PF07238 PilZ domain Y11_RS14735 PF03170 Bacterial cellulose synthase subunit Y11_RS14740 PF01270 Glycosyl hydrolases family 8 Y11_RS14755 PF17154 Gammaproteobacterial periplasmic sensor domain Y11_RS14755 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS14755 PF00672 HAMP domain Y11_RS14755 PF00563 EAL domain Y11_RS14760 PF06178 Oligogalacturonate-specific porin protein (KdgM) Y11_RS14765 PF06917 Periplasmic pectate lyase Y11_RS14775 PF00375 Sodium:dicarboxylate symporter family Y11_RS14780 PF05193 Peptidase M16 inactive domain Y11_RS14780 PF00675 Insulinase (Peptidase family M16) Y11_RS14785 PF00294 pfkB family carbohydrate kinase Y11_RS14790 PF01361 Tautomerase enzyme Y11_RS14795 PF00563 EAL domain Y11_RS14800 PF05170 AsmA family Y11_RS14805 PF02611 CDP-diacylglycerol pyrophosphatase Y11_RS14810 PF03631 Virulence factor BrkB Y11_RS14815 PF03797 Autotransporter beta-domain Y11_RS14820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y11_RS14820 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_RS14825 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Y11_RS14830 PF01432 Peptidase family M3 Y11_RS14835 PF04445 Putative SAM-dependent methyltransferase Y11_RS14840 PF08548 Peptidase M10 serralysin C terminal Y11_RS14840 PF00413 Matrixin Y11_RS14840 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Y11_RS14845 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y11_RS14845 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Y11_RS14850 PF00582 Universal stress protein family Y11_RS14855 PF10625 Universal stress protein B (UspB) Y11_RS14860 PF01384 Phosphate transporter family Y11_RS14870 PF00375 Sodium:dicarboxylate symporter family Y11_RS14885 PF07476 Methylaspartate ammonia-lyase C-terminus Y11_RS14885 PF05034 Methylaspartate ammonia-lyase N-terminus Y11_RS14890 PF06368 Methylaspartate mutase E chain (MutE) Y11_RS14895 PF13941 MutL protein Y11_RS14900 PF02310 B12 binding domain Y11_RS14905 PF00288 GHMP kinases N terminal domain Y11_RS14910 PF10414 Sirohaem synthase dimerisation region Y11_RS14910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_RS14910 PF14824 Sirohaem biosynthesis protein central Y11_RS14915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS14915 PF03466 LysR substrate binding domain Y11_RS14920 PF05683 Fumarase C-terminus Y11_RS14920 PF05681 Fumarate hydratase (Fumerase) Y11_RS14925 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Y11_RS14940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS14940 PF03466 LysR substrate binding domain Y11_RS14945 PF07690 Major Facilitator Superfamily Y11_RS14950 PF00171 Aldehyde dehydrogenase family Y11_RS14955 PF04962 KduI/IolB family Y11_RS14965 PF00294 pfkB family carbohydrate kinase Y11_RS14970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_RS14970 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_RS14970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_RS14975 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y11_RS14975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y11_RS14980 PF01261 Xylose isomerase-like TIM barrel Y11_RS14985 PF00583 Acetyltransferase (GNAT) family Y11_RS14990 PF17954 Quercetinase C-terminal cupin domain Y11_RS14990 PF02678 Pirin Y11_RS14995 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_RS14995 PF00356 Bacterial regulatory proteins, lacI family Y11_RS15000 PF02447 GntP family permease Y11_RS15005 PF01202 Shikimate kinase Y11_RS15010 PF01914 MarC family integral membrane protein Y11_RS15015 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y11_RS15015 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y11_RS15020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_RS15020 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_RS15020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_RS15025 PF03306 Alpha-acetolactate decarboxylase Y11_RS15030 PF03466 LysR substrate binding domain Y11_RS15030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS15035 PF07694 5TMR of 5TMR-LYT Y11_RS15035 PF06580 Histidine kinase Y11_RS15040 PF02806 Alpha amylase, C-terminal all-beta domain Y11_RS15040 PF00128 Alpha amylase, catalytic domain Y11_RS15040 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y11_RS15045 PF00128 Alpha amylase, catalytic domain Y11_RS15045 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y11_RS15045 PF18390 Glycogen debranching enzyme C-terminal domain Y11_RS15050 PF00483 Nucleotidyl transferase Y11_RS15055 PF08323 Starch synthase catalytic domain Y11_RS15055 PF00534 Glycosyl transferases group 1 Y11_RS15060 PF00343 Carbohydrate phosphorylase Y11_RS15065 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Y11_RS15065 PF01266 FAD dependent oxidoreductase Y11_RS15075 PF08220 DeoR-like helix-turn-helix domain Y11_RS15075 PF00455 DeoR C terminal sensor domain Y11_RS15080 PF01694 Rhomboid family Y11_RS15080 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease Y11_RS15085 PF00581 Rhodanese-like domain Y11_RS15095 PF17874 MalT-like TPR region Y11_RS15095 PF00196 Bacterial regulatory proteins, luxR family Y11_RS15100 PF00343 Carbohydrate phosphorylase Y11_RS15105 PF02446 4-alpha-glucanotransferase Y11_RS15110 PF02371 Transposase IS116/IS110/IS902 family Y11_RS15110 PF01548 Transposase Y11_RS15115 PF01106 NifU-like domain Y11_RS15115 PF01521 Iron-sulphur cluster biosynthesis Y11_RS15120 PF00156 Phosphoribosyl transferase domain Y11_RS15125 PF00561 alpha/beta hydrolase fold Y11_RS15130 PF07338 Protein of unknown function (DUF1471) Y11_RS15135 PF09012 FeoC like transcriptional regulator Y11_RS15140 PF17910 FeoB cytosolic helical domain Y11_RS15140 PF07670 Nucleoside recognition Y11_RS15140 PF07664 Ferrous iron transport protein B C terminus Y11_RS15140 PF02421 Ferrous iron transport protein B Y11_RS15145 PF04023 FeoA domain Y11_RS15150 PF09371 Tex-like protein N-terminal domain Y11_RS15150 PF16921 Tex protein YqgF-like domain Y11_RS15150 PF00575 S1 RNA binding domain Y11_RS15150 PF17674 HHH domain Y11_RS15175 PF01272 Transcription elongation factor, GreA/GreB, C-term Y11_RS15175 PF03449 Transcription elongation factor, N-terminal Y11_RS15180 PF00072 Response regulator receiver domain Y11_RS15180 PF00486 Transcriptional regulatory protein, C terminal Y11_RS15185 PF00672 HAMP domain Y11_RS15185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS15185 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS15190 PF01293 Phosphoenolpyruvate carboxykinase Y11_RS15195 PF01430 Hsp33 protein Y11_RS15200 PF01479 S4 domain Y11_RS15205 PF13419 Haloacid dehalogenase-like hydrolase Y11_RS15215 PF00293 NUDIX domain Y11_RS15220 PF00905 Penicillin binding protein transpeptidase domain Y11_RS15220 PF00912 Transglycosylase Y11_RS15220 PF17092 Penicillin-binding protein OB-like domain Y11_RS15245 PF03958 Bacterial type II/III secretion system short domain Y11_RS15245 PF00263 Bacterial type II and III secretion system protein Y11_RS15250 PF01202 Shikimate kinase Y11_RS15255 PF01761 3-dehydroquinate synthase Y11_RS15260 PF05036 Sporulation related domain Y11_RS15265 PF02086 D12 class N6 adenine-specific DNA methyltransferase Y11_RS15270 PF00834 Ribulose-phosphate 3 epimerase family Y11_RS15275 PF13419 Haloacid dehalogenase-like hydrolase Y11_RS15280 PF00579 tRNA synthetases class I (W and Y) Y11_RS15285 PF14824 Sirohaem biosynthesis protein central Y11_RS15285 PF10414 Sirohaem synthase dimerisation region Y11_RS15285 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_RS15290 PF01226 Formate/nitrite transporter Y11_RS15295 PF13806 Rieske-like [2Fe-2S] domain Y11_RS15300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y11_RS15300 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_RS15300 PF04324 BFD-like [2Fe-2S] binding domain Y11_RS15300 PF18267 Rubredoxin NAD+ reductase C-terminal domain Y11_RS15300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y11_RS15305 PF07969 Amidohydrolase family Y11_RS15310 PF07690 Major Facilitator Superfamily Y11_RS15315 PF00356 Bacterial regulatory proteins, lacI family Y11_RS15320 PF11975 Family 4 glycosyl hydrolase C-terminal domain Y11_RS15320 PF02056 Family 4 glycosyl hydrolase Y11_RS15325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Y11_RS15330 PF05872 Bacterial protein of unknown function (DUF853) Y11_RS15335 PF00117 Glutamine amidotransferase class-I Y11_RS15345 PF12805 FUSC-like inner membrane protein yccS Y11_RS15350 PF00027 Cyclic nucleotide-binding domain Y11_RS15350 PF13545 Crp-like helix-turn-helix domain Y11_RS15355 PF02566 OsmC-like protein Y11_RS15360 PF00485 Phosphoribulokinase / Uridine kinase family Y11_RS15365 PF06794 Uncharacterised protein family (UPF0270) Y11_RS15370 PF00561 alpha/beta hydrolase fold Y11_RS15375 PF01810 LysE type translocator Y11_RS15380 PF02567 Phenazine biosynthesis-like protein Y11_RS15385 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y11_RS15390 PF00005 ABC transporter Y11_RS15395 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS15400 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y11_RS15410 PF00535 Glycosyl transferase family 2 Y11_RS15415 PF00005 ABC transporter Y11_RS15415 PF12848 ABC transporter Y11_RS15420 PF02525 Flavodoxin-like fold Y11_RS15425 PF02254 TrkA-N domain Y11_RS15425 PF00999 Sodium/hydrogen exchanger family Y11_RS15430 PF09526 Probable metal-binding protein (DUF2387) Y11_RS15435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y11_RS15440 PF04102 SlyX Y11_RS15445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y11_RS15445 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y11_RS15450 PF13309 HTH domain Y11_RS15450 PF08348 YheO-like PAS domain Y11_RS15455 PF02635 DsrE/DsrF-like family Y11_RS15460 PF02635 DsrE/DsrF-like family Y11_RS15465 PF04077 DsrH like protein Y11_RS15470 PF00164 Ribosomal protein S12/S23 Y11_RS15475 PF00177 Ribosomal protein S7p/S5e Y11_RS15480 PF00679 Elongation factor G C-terminus Y11_RS15480 PF14492 Elongation Factor G, domain II Y11_RS15480 PF03764 Elongation factor G, domain IV Y11_RS15480 PF00009 Elongation factor Tu GTP binding domain Y11_RS15480 PF03144 Elongation factor Tu domain 2 Y11_RS15485 PF00009 Elongation factor Tu GTP binding domain Y11_RS15485 PF03144 Elongation factor Tu domain 2 Y11_RS15485 PF03143 Elongation factor Tu C-terminal domain Y11_RS15490 PF04324 BFD-like [2Fe-2S] binding domain Y11_RS15495 PF00210 Ferritin-like domain Y11_RS15500 PF00338 Ribosomal protein S10p/S20e Y11_RS15505 PF00297 Ribosomal protein L3 Y11_RS15510 PF00573 Ribosomal protein L4/L1 family Y11_RS15515 PF00276 Ribosomal protein L23 Y11_RS15520 PF00181 Ribosomal Proteins L2, RNA binding domain Y11_RS15520 PF03947 Ribosomal Proteins L2, C-terminal domain Y11_RS15525 PF00203 Ribosomal protein S19 Y11_RS15530 PF00237 Ribosomal protein L22p/L17e Y11_RS15535 PF00189 Ribosomal protein S3, C-terminal domain Y11_RS15535 PF07650 KH domain Y11_RS15540 PF00252 Ribosomal protein L16p/L10e Y11_RS15545 PF00831 Ribosomal L29 protein Y11_RS15550 PF00366 Ribosomal protein S17 Y11_RS15555 PF00238 Ribosomal protein L14p/L23e Y11_RS15560 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Y11_RS15560 PF00467 KOW motif Y11_RS15565 PF00673 ribosomal L5P family C-terminus Y11_RS15565 PF00281 Ribosomal protein L5 Y11_RS15570 PF00253 Ribosomal protein S14p/S29e Y11_RS15575 PF00410 Ribosomal protein S8 Y11_RS15580 PF00347 Ribosomal protein L6 Y11_RS15585 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Y11_RS15590 PF00333 Ribosomal protein S5, N-terminal domain Y11_RS15590 PF03719 Ribosomal protein S5, C-terminal domain Y11_RS15595 PF00327 Ribosomal protein L30p/L7e Y11_RS15600 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Y11_RS15605 PF00344 SecY translocase Y11_RS15610 PF00444 Ribosomal protein L36 Y11_RS15615 PF00416 Ribosomal protein S13/S18 Y11_RS15620 PF00411 Ribosomal protein S11 Y11_RS15625 PF00163 Ribosomal protein S4/S9 N-terminal domain Y11_RS15625 PF01479 S4 domain Y11_RS15630 PF01000 RNA polymerase Rpb3/RpoA insert domain Y11_RS15630 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Y11_RS15630 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Y11_RS15635 PF01196 Ribosomal protein L17 Y11_RS15640 PF09350 Domain of unknown function (DUF1992) Y11_RS15645 PF13411 MerR HTH family regulatory protein Y11_RS15650 PF03889 Alternative ribosome-rescue factor A Y11_RS15660 PF01741 Large-conductance mechanosensitive channel, MscL Y11_RS15665 PF02254 TrkA-N domain Y11_RS15665 PF02080 TrkA-C domain Y11_RS15670 PF01029 NusB family Y11_RS15670 PF01189 16S rRNA methyltransferase RsmB/F Y11_RS15675 PF02911 Formyl transferase, C-terminal domain Y11_RS15675 PF00551 Formyl transferase Y11_RS15680 PF01327 Polypeptide deformylase Y11_RS15685 PF17782 DprA winged helix domain Y11_RS15685 PF02481 DNA recombination-mediator protein A Y11_RS15690 PF04361 Protein of unknown function (DUF494) Y11_RS15695 PF01396 Topoisomerase DNA binding C4 zinc finger Y11_RS15700 PF01300 Telomere recombination Y11_RS15705 PF08501 Shikimate dehydrogenase substrate binding domain Y11_RS15705 PF01488 Shikimate / quinate 5-dehydrogenase Y11_RS15705 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Y11_RS15710 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_RS15750 PF13407 Periplasmic binding protein domain Y11_RS15755 PF00005 ABC transporter Y11_RS15760 PF02653 Branched-chain amino acid transport system / permease component Y11_RS15765 PF02653 Branched-chain amino acid transport system / permease component Y11_RS15770 PF03466 LysR substrate binding domain Y11_RS15770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS15775 PF04219 Protein of unknown function, DUF Y11_RS15780 PF13335 Magnesium chelatase, subunit ChlI C-terminal Y11_RS15780 PF01078 Magnesium chelatase, subunit ChlI Y11_RS15785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_RS15785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_RS15785 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_RS15795 PF01063 Amino-transferase class IV Y11_RS15800 PF00920 Dehydratase family Y11_RS15805 PF00291 Pyridoxal-phosphate dependent enzyme Y11_RS15805 PF00585 C-terminal regulatory domain of Threonine dehydratase Y11_RS15820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS15820 PF03466 LysR substrate binding domain Y11_RS15825 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Y11_RS15825 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Y11_RS15830 PF06958 S-type Pyocin Y11_RS15835 PF01320 Colicin immunity protein / pyocin immunity protein Y11_RS15840 PF01320 Colicin immunity protein / pyocin immunity protein Y11_RS15850 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_RS15850 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_RS15860 PF13954 PapC N-terminal domain Y11_RS15860 PF00577 Outer membrane usher protein Y11_RS15860 PF13953 PapC C-terminal domain Y11_RS15865 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_RS15865 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_RS15880 PF13361 UvrD-like helicase C-terminal domain Y11_RS15880 PF00580 UvrD/REP helicase N-terminal domain Y11_RS15885 PF00295 Glycosyl hydrolases family 28 Y11_RS15890 PF02541 Ppx/GppA phosphatase family Y11_RS15895 PF00270 DEAD/DEAH box helicase Y11_RS15895 PF00271 Helicase conserved C-terminal domain Y11_RS15900 PF00085 Thioredoxin Y11_RS15905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y11_RS15905 PF07497 Rho termination factor, RNA-binding domain Y11_RS15905 PF07498 Rho termination factor, N-terminal domain Y11_RS15910 PF00953 Glycosyl transferase family 4 Y11_RS15915 PF02706 Chain length determinant protein Y11_RS15920 PF02350 UDP-N-acetylglucosamine 2-epimerase Y11_RS15925 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y11_RS15925 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y11_RS15925 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y11_RS15930 PF16363 GDP-mannose 4,6 dehydratase Y11_RS15935 PF00483 Nucleotidyl transferase Y11_RS15945 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Y11_RS15950 PF01943 Polysaccharide biosynthesis protein Y11_RS15955 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 Y11_RS15960 PF06899 WzyE protein, O-antigen assembly polymerase Y11_RS15965 PF03808 Glycosyl transferase WecB/TagA/CpsF family Y11_RS16000 PF02371 Transposase IS116/IS110/IS902 family Y11_RS16000 PF01548 Transposase Y11_RS16005 PF07719 Tetratricopeptide repeat Y11_RS16005 PF07219 HemY protein N-terminus Y11_RS16010 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase Y11_RS16015 PF02602 Uroporphyrinogen-III synthase HemD Y11_RS16020 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Y11_RS16020 PF03900 Porphobilinogen deaminase, C-terminal domain Y11_RS16025 PF12633 Adenylate cyclase NT domain Y11_RS16025 PF01295 Adenylate cyclase, class-I Y11_RS16030 PF01491 Frataxin-like domain Y11_RS16035 PF13627 Prokaryotic lipoprotein-attachment site Y11_RS16040 PF01678 Diaminopimelate epimerase Y11_RS16045 PF04340 Protein of unknown function, DUF484 Y11_RS16050 PF00589 Phage integrase family Y11_RS16050 PF02899 Phage integrase, N-terminal SAM-like domain Y11_RS16055 PF13419 Haloacid dehalogenase-like hydrolase Y11_RS16060 PF00580 UvrD/REP helicase N-terminal domain Y11_RS16060 PF13361 UvrD-like helicase C-terminal domain Y11_RS16075 PF09370 Phosphoenolpyruvate hydrolase-like Y11_RS16080 PF01544 CorA-like Mg2+ transporter protein Y11_RS16085 PF00892 EamA-like transporter family Y11_RS16090 PF03061 Thioesterase superfamily Y11_RS16095 PF02253 Phospholipase A1 Y11_RS16100 PF16124 RecQ zinc-binding Y11_RS16100 PF00570 HRDC domain Y11_RS16100 PF00271 Helicase conserved C-terminal domain Y11_RS16100 PF09382 RQC domain Y11_RS16100 PF00270 DEAD/DEAH box helicase Y11_RS16105 PF01810 LysE type translocator Y11_RS16110 PF01810 LysE type translocator Y11_RS16115 PF12146 Serine aminopeptidase, S33 Y11_RS16125 PF01548 Transposase Y11_RS16125 PF02371 Transposase IS116/IS110/IS902 family Y11_RS16130 PF03009 Glycerophosphoryl diester phosphodiesterase family Y11_RS16135 PF07690 Major Facilitator Superfamily Y11_RS16140 PF01266 FAD dependent oxidoreductase Y11_RS16140 PF04324 BFD-like [2Fe-2S] binding domain Y11_RS16145 PF00890 FAD binding domain Y11_RS16150 PF13183 4Fe-4S dicluster domain Y11_RS16150 PF02754 Cysteine-rich domain Y11_RS16155 PF08786 DcrB Y11_RS16160 PF02592 Putative vitamin uptake transporter Y11_RS16165 PF01206 Sulfurtransferase TusA Y11_RS16170 PF00403 Heavy-metal-associated domain Y11_RS16175 PF07947 YhhN family Y11_RS16190 PF06611 Protein of unknown function (DUF1145) Y11_RS16200 PF02881 SRP54-type protein, helical bundle domain Y11_RS16200 PF00448 SRP54-type protein, GTPase domain Y11_RS16205 PF00005 ABC transporter Y11_RS16210 PF02687 FtsX-like permease family Y11_RS16210 PF18075 FtsX extracellular domain Y11_RS16215 PF04545 Sigma-70, region 4 Y11_RS16215 PF00140 Sigma-70 factor, region 1.2 Y11_RS16215 PF04542 Sigma-70 region 2 Y11_RS16230 PF12568 Acetyltransferase (GNAT) domain, PanZ Y11_RS16235 PF13458 Periplasmic binding protein Y11_RS16240 PF02653 Branched-chain amino acid transport system / permease component Y11_RS16245 PF11862 Domain of unknown function (DUF3382) Y11_RS16245 PF02653 Branched-chain amino acid transport system / permease component Y11_RS16250 PF00005 ABC transporter Y11_RS16250 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y11_RS16255 PF00005 ABC transporter Y11_RS16295 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS16300 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS16305 PF17912 MalK OB fold domain Y11_RS16305 PF00005 ABC transporter Y11_RS16310 PF03009 Glycerophosphoryl diester phosphodiesterase family Y11_RS16315 PF03547 Membrane transport protein Y11_RS16320 PF00892 EamA-like transporter family Y11_RS16325 PF03466 LysR substrate binding domain Y11_RS16325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS16330 PF08267 Cobalamin-independent synthase, N-terminal domain Y11_RS16330 PF01717 Cobalamin-independent synthase, Catalytic domain Y11_RS16335 PF01738 Dienelactone hydrolase family Y11_RS16340 PF01048 Phosphorylase superfamily Y11_RS16355 PF02554 Carbon starvation protein CstA Y11_RS16355 PF13722 5TM C-terminal transporter carbon starvation CstA Y11_RS16360 PF09335 SNARE associated Golgi protein Y11_RS16365 PF02646 RmuC family Y11_RS16370 PF01209 ubiE/COQ5 methyltransferase family Y11_RS16375 PF02036 SCP-2 sterol transfer family Y11_RS16380 PF03109 ABC1 family Y11_RS16385 PF02416 mttA/Hcf106 family Y11_RS16395 PF00902 Sec-independent protein translocase protein (TatC) Y11_RS16400 PF01026 TatD related DNase Y11_RS16405 PF00490 Delta-aminolevulinic acid dehydratase Y11_RS16410 PF02357 Transcription termination factor nusG Y11_RS16415 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Y11_RS16420 PF00970 Oxidoreductase FAD-binding domain Y11_RS16420 PF00175 Oxidoreductase NAD-binding domain Y11_RS16425 PF00108 Thiolase, N-terminal domain Y11_RS16425 PF02803 Thiolase, C-terminal domain Y11_RS16430 PF00378 Enoyl-CoA hydratase/isomerase Y11_RS16430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y11_RS16430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y11_RS16435 PF00557 Metallopeptidase family M24 Y11_RS16440 PF09186 Domain of unknown function (DUF1949) Y11_RS16440 PF01205 Uncharacterized protein family UPF0029 Y11_RS16445 PF02386 Cation transport protein Y11_RS16450 PF12724 Flavodoxin domain Y11_RS16480 PF02371 Transposase IS116/IS110/IS902 family Y11_RS16480 PF01548 Transposase Y11_RS16485 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Y11_RS16485 PF01565 FAD binding domain Y11_RS16490 PF02237 Biotin protein ligase C terminal domain Y11_RS16490 PF08279 HTH domain Y11_RS16490 PF03099 Biotin/lipoate A/B protein ligase family Y11_RS16495 PF00485 Phosphoribulokinase / Uridine kinase family Y11_RS16525 PF03144 Elongation factor Tu domain 2 Y11_RS16525 PF00009 Elongation factor Tu GTP binding domain Y11_RS16525 PF03143 Elongation factor Tu C-terminal domain Y11_RS16530 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Y11_RS16535 PF02357 Transcription termination factor nusG Y11_RS16535 PF00467 KOW motif Y11_RS16540 PF00298 Ribosomal protein L11, RNA binding domain Y11_RS16540 PF03946 Ribosomal protein L11, N-terminal domain Y11_RS16545 PF00687 Ribosomal protein L1p/L10e family Y11_RS16550 PF00466 Ribosomal protein L10 Y11_RS16555 PF00542 Ribosomal protein L7/L12 C-terminal domain Y11_RS16555 PF16320 Ribosomal protein L7/L12 dimerisation domain Y11_RS16560 PF04560 RNA polymerase Rpb2, domain 7 Y11_RS16560 PF00562 RNA polymerase Rpb2, domain 6 Y11_RS16560 PF04565 RNA polymerase Rpb2, domain 3 Y11_RS16560 PF04563 RNA polymerase beta subunit Y11_RS16560 PF10385 RNA polymerase beta subunit external 1 domain Y11_RS16560 PF04561 RNA polymerase Rpb2, domain 2 Y11_RS16565 PF04997 RNA polymerase Rpb1, domain 1 Y11_RS16565 PF00623 RNA polymerase Rpb1, domain 2 Y11_RS16565 PF04998 RNA polymerase Rpb1, domain 5 Y11_RS16565 PF04983 RNA polymerase Rpb1, domain 3 Y11_RS16565 PF05000 RNA polymerase Rpb1, domain 4 Y11_RS16570 PF01548 Transposase Y11_RS16570 PF02371 Transposase IS116/IS110/IS902 family Y11_RS16575 PF06968 Biotin and Thiamin Synthesis associated domain Y11_RS16575 PF04055 Radical SAM superfamily Y11_RS16580 PF05690 Thiazole biosynthesis protein ThiG Y11_RS16585 PF02597 ThiS family Y11_RS16590 PF00899 ThiF family Y11_RS16595 PF02581 Thiamine monophosphate synthase Y11_RS16600 PF01964 Radical SAM ThiC family Y11_RS16600 PF13667 ThiC-associated domain Y11_RS16605 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Y11_RS16610 PF00293 NUDIX domain Y11_RS16610 PF09297 NADH pyrophosphatase zinc ribbon domain Y11_RS16615 PF01208 Uroporphyrinogen decarboxylase (URO-D) Y11_RS16620 PF04493 Endonuclease V Y11_RS16625 PF04222 Protein of unknown function (DUF416) Y11_RS16630 PF00216 Bacterial DNA-binding protein Y11_RS16635 PF07356 Protein of unknown function (DUF1481) Y11_RS16640 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Y11_RS16640 PF02843 Phosphoribosylglycinamide synthetase, C domain Y11_RS16640 PF02844 Phosphoribosylglycinamide synthetase, N domain Y11_RS16645 PF02142 MGS-like domain Y11_RS16645 PF01808 AICARFT/IMPCHase bienzyme Y11_RS16685 PF00474 Sodium:solute symporter family Y11_RS16690 PF04341 Protein of unknown function, DUF485 Y11_RS16695 PF00501 AMP-binding enzyme Y11_RS16695 PF16177 Acetyl-coenzyme A synthetase N-terminus Y11_RS16695 PF13193 AMP-binding enzyme C-terminal domain Y11_RS16700 PF00375 Sodium:dicarboxylate symporter family Y11_RS16705 PF00072 Response regulator receiver domain Y11_RS16705 PF00196 Bacterial regulatory proteins, luxR family Y11_RS16710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS16710 PF00672 HAMP domain Y11_RS16710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y11_RS16710 PF00072 Response regulator receiver domain Y11_RS16710 PF01627 Hpt domain Y11_RS16710 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS16720 PF03958 Bacterial type II/III secretion system short domain Y11_RS16720 PF00263 Bacterial type II and III secretion system protein Y11_RS16750 PF04888 Secretion system effector C (SseC) like family Y11_RS16775 PF14525 AraC-binding-like domain Y11_RS16775 PF12833 Helix-turn-helix domain Y11_RS16795 PF01514 Secretory protein of YscJ/FliF family Y11_RS16815 PF00771 FHIPEP family Y11_RS16820 PF18269 T3SS EscN ATPase C-terminal domain Y11_RS16820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y11_RS16835 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y11_RS16840 PF00813 FliP family Y11_RS16845 PF01313 Bacterial export proteins, family 3 Y11_RS16855 PF01312 FlhB HrpN YscU SpaS Family Y11_RS16860 PF04143 Sulphur transport Y11_RS16865 PF04143 Sulphur transport Y11_RS16870 PF01206 Sulfurtransferase TusA Y11_RS16885 PF04773 FecR protein Y11_RS16885 PF16220 Domain of unknown function (DUF4880) Y11_RS16890 PF07715 TonB-dependent Receptor Plug Domain Y11_RS16895 PF00005 ABC transporter Y11_RS16895 PF06472 ABC transporter transmembrane region 2 Y11_RS16900 PF05193 Peptidase M16 inactive domain Y11_RS16900 PF00675 Insulinase (Peptidase family M16) Y11_RS16905 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Y11_RS16910 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Y11_RS16915 PF12794 Mechanosensitive ion channel inner membrane domain 1 Y11_RS16915 PF12795 Mechanosensitive ion channel porin domain Y11_RS16915 PF00924 Mechanosensitive ion channel Y11_RS16920 PF00593 TonB dependent receptor Y11_RS16920 PF07715 TonB-dependent Receptor Plug Domain Y11_RS16925 PF00155 Aminotransferase class I and II Y11_RS16925 PF00392 Bacterial regulatory proteins, gntR family Y11_RS16930 PF00005 ABC transporter Y11_RS16935 PF01032 FecCD transport family Y11_RS16940 PF01497 Periplasmic binding protein Y11_RS16945 PF05171 Haemin-degrading HemS.ChuX domain Y11_RS16950 PF00593 TonB dependent receptor Y11_RS16950 PF07715 TonB-dependent Receptor Plug Domain Y11_RS16955 PF10636 Hemin uptake protein hemP Y11_RS16965 PF06228 Haem utilisation ChuX/HutX Y11_RS16970 PF04055 Radical SAM superfamily Y11_RS16975 PF00291 Pyridoxal-phosphate dependent enzyme Y11_RS16980 PF01490 Transmembrane amino acid transporter protein Y11_RS16985 PF00871 Acetokinase family Y11_RS16990 PF01228 Glycine radical Y11_RS16990 PF02901 Pyruvate formate lyase-like Y11_RS17005 PF02595 Glycerate kinase family Y11_RS17010 PF02595 Glycerate kinase family Y11_RS17015 PF11412 Disulphide bond corrector protein DsbC Y11_RS17015 PF02683 Cytochrome C biogenesis protein transmembrane region Y11_RS17020 PF03091 CutA1 divalent ion tolerance protein Y11_RS17025 PF03605 Anaerobic c4-dicarboxylate membrane transporter Y11_RS17030 PF00206 Lyase Y11_RS17030 PF10415 Fumarase C C-terminus Y11_RS17035 PF04186 FxsA cytoplasmic membrane protein Y11_RS17040 PF00166 Chaperonin 10 Kd subunit Y11_RS17045 PF00118 TCP-1/cpn60 chaperonin family Y11_RS17055 PF13698 Domain of unknown function (DUF4156) Y11_RS17060 PF04055 Radical SAM superfamily Y11_RS17065 PF01132 Elongation factor P (EF-P) OB domain Y11_RS17065 PF08207 Elongation factor P (EF-P) KOW-like domain Y11_RS17065 PF09285 Elongation factor P, C-terminal Y11_RS17070 PF08085 Entericidin EcnA/B family Y11_RS17075 PF00893 Small Multidrug Resistance protein Y11_RS17080 PF08212 Lipocalin-like domain Y11_RS17085 PF02313 Fumarate reductase subunit D Y11_RS17090 PF02300 Fumarate reductase subunit C Y11_RS17095 PF13085 2Fe-2S iron-sulfur cluster binding domain Y11_RS17095 PF13183 4Fe-4S dicluster domain Y11_RS17100 PF00890 FAD binding domain Y11_RS17100 PF02910 Fumarate reductase flavoprotein C-term Y11_RS17105 PF00152 tRNA synthetases class II (D, K and N) Y11_RS17110 PF12795 Mechanosensitive ion channel porin domain Y11_RS17110 PF00924 Mechanosensitive ion channel Y11_RS17110 PF12794 Mechanosensitive ion channel inner membrane domain 1 Y11_RS17115 PF02666 Phosphatidylserine decarboxylase Y11_RS17120 PF03193 RsgA GTPase Y11_RS17125 PF00929 Exonuclease Y11_RS17140 PF08331 Domain of unknown function (DUF1730) Y11_RS17145 PF01256 Carbohydrate kinase Y11_RS17145 PF03853 YjeF-related protein N-terminus Y11_RS17150 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Y11_RS17155 PF01520 N-acetylmuramoyl-L-alanine amidase Y11_RS17160 PF01119 DNA mismatch repair protein, C-terminal domain Y11_RS17160 PF08676 MutL C terminal dimerisation domain Y11_RS17170 PF17209 Hfq protein Y11_RS17175 PF01926 50S ribosome-binding GTPase Y11_RS17175 PF13167 GTP-binding GTPase N-terminal Y11_RS17175 PF16360 GTP-binding GTPase Middle Region Y11_RS17180 PF12221 Bacterial membrane protein N terminal Y11_RS17180 PF01145 SPFH domain / Band 7 family Y11_RS17185 PF01145 SPFH domain / Band 7 family Y11_RS17190 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) Y11_RS17195 PF00709 Adenylosuccinate synthetase Y11_RS17200 PF02082 Transcriptional regulator Y11_RS17205 PF00575 S1 RNA binding domain Y11_RS17205 PF00773 RNB domain Y11_RS17205 PF08206 Ribonuclease B OB domain Y11_RS17205 PF08461 Ribonuclease R winged-helix domain Y11_RS17205 PF17876 Cold shock domain Y11_RS17210 PF00588 SpoU rRNA Methylase family Y11_RS17210 PF08032 RNA 2'-O ribose methyltransferase substrate binding Y11_RS17215 PF02770 Acyl-CoA dehydrogenase, middle domain Y11_RS17215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y11_RS17215 PF18158 Adaptive response protein AidB N-terminal domain Y11_RS17220 PF18158 Adaptive response protein AidB N-terminal domain Y11_RS17220 PF02770 Acyl-CoA dehydrogenase, middle domain Y11_RS17220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y11_RS17225 PF07338 Protein of unknown function (DUF1471) Y11_RS17230 PF00326 Prolyl oligopeptidase family Y11_RS17240 PF01250 Ribosomal protein S6 Y11_RS17245 PF00436 Single-strand binding protein family Y11_RS17250 PF01084 Ribosomal protein S18 Y11_RS17255 PF03948 Ribosomal protein L9, C-terminal domain Y11_RS17255 PF01281 Ribosomal protein L9, N-terminal domain Y11_RS17265 PF04225 Opacity-associated protein A LysM-like domain Y11_RS17265 PF08525 Opacity-associated protein A N-terminal motif Y11_RS17270 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y11_RS17270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y11_RS17275 PF04405 Domain of Unknown function (DUF542) Y11_RS17275 PF01814 Hemerythrin HHE cation binding domain Y11_RS17280 PF02872 5'-nucleotidase, C-terminal domain Y11_RS17280 PF00149 Calcineurin-like phosphoesterase Y11_RS17285 PF00459 Inositol monophosphatase family Y11_RS17290 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) Y11_RS17295 PF06526 Protein of unknown function (DUF1107) Y11_RS17300 PF03471 Transporter associated domain Y11_RS17300 PF00571 CBS domain Y11_RS17300 PF01595 Cyclin M transmembrane N-terminal domain Y11_RS17305 PF01625 Peptide methionine sulfoxide reductase Y11_RS17310 PF17243 POTRA domain TamA domain 1 Y11_RS17310 PF07244 Surface antigen variable number repeat Y11_RS17310 PF01103 Surface antigen Y11_RS17315 PF04357 TamB, inner membrane protein subunit of TAM complex Y11_RS17320 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like Y11_RS17325 PF00719 Inorganic pyrophosphatase Y11_RS17330 PF00672 HAMP domain Y11_RS17330 PF02203 Tar ligand binding domain homologue Y11_RS17330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_RS17335 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Y11_RS17340 PF08245 Mur ligase middle domain Y11_RS17340 PF02875 Mur ligase family, glutamate ligase domain Y11_RS17340 PF01225 Mur ligase family, catalytic domain Y11_RS17350 PF02863 Arginine repressor, C-terminal domain Y11_RS17350 PF01316 Arginine repressor, DNA binding domain Y11_RS17355 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Y11_RS17355 PF00056 lactate/malate dehydrogenase, NAD binding domain Y11_RS17360 PF13693 Winged helix-turn-helix DNA-binding Y11_RS17370 PF00348 Polyprenyl synthetase Y11_RS17375 PF00829 Ribosomal prokaryotic L21 protein Y11_RS17380 PF01016 Ribosomal L27 protein Y11_RS17385 PF00892 EamA-like transporter family Y11_RS17390 PF01926 50S ribosome-binding GTPase Y11_RS17390 PF01018 GTP1/OBG Y11_RS17395 PF00672 HAMP domain Y11_RS17395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS17395 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS17400 PF00072 Response regulator receiver domain Y11_RS17400 PF00486 Transcriptional regulatory protein, C terminal Y11_RS17405 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Y11_RS17410 PF03449 Transcription elongation factor, N-terminal Y11_RS17410 PF01272 Transcription elongation factor, GreA/GreB, C-term Y11_RS17415 PF01985 CRS1 / YhbY (CRM) domain Y11_RS17420 PF01728 FtsJ-like methyltransferase Y11_RS17425 PF17862 AAA+ lid domain Y11_RS17425 PF00004 ATPase family associated with various cellular activities (AAA) Y11_RS17425 PF06480 FtsH Extracellular Y11_RS17425 PF01434 Peptidase family M41 Y11_RS17430 PF00809 Pterin binding enzyme Y11_RS17435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Y11_RS17435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Y11_RS17435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Y11_RS17435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Y11_RS17440 PF03840 Preprotein translocase SecG subunit Y11_RS17455 PF02576 RimP N-terminal domain Y11_RS17455 PF17384 RimP C-terminal SH3 domain Y11_RS17460 PF00575 S1 RNA binding domain Y11_RS17460 PF08529 NusA N-terminal domain Y11_RS17460 PF13184 NusA-like KH domain Y11_RS17465 PF04760 Translation initiation factor IF-2, N-terminal region Y11_RS17465 PF00009 Elongation factor Tu GTP binding domain Y11_RS17465 PF03144 Elongation factor Tu domain 2 Y11_RS17465 PF11987 Translation-initiation factor 2 Y11_RS17465 PF08364 Bacterial translation initiation factor IF-2 associated region Y11_RS17470 PF02033 Ribosome-binding factor A Y11_RS17475 PF01509 TruB family pseudouridylate synthase (N terminal domain) Y11_RS17475 PF16198 tRNA pseudouridylate synthase B C-terminal domain Y11_RS17475 PF09157 Pseudouridine synthase II TruB, C-terminal Y11_RS17480 PF00312 Ribosomal protein S15 Y11_RS17485 PF03725 3' exoribonuclease family, domain 2 Y11_RS17485 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Y11_RS17485 PF00575 S1 RNA binding domain Y11_RS17485 PF01138 3' exoribonuclease family, domain 1 Y11_RS17485 PF00013 KH domain Y11_RS17490 PF13181 Tetratricopeptide repeat Y11_RS17490 PF07719 Tetratricopeptide repeat Y11_RS17495 PF00271 Helicase conserved C-terminal domain Y11_RS17495 PF03880 DbpA RNA binding domain Y11_RS17495 PF00270 DEAD/DEAH box helicase Y11_RS17495 PF12343 Cold shock protein DEAD box A Y11_RS17505 PF00296 Luciferase-like monooxygenase Y11_RS17510 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Y11_RS17510 PF02321 Outer membrane efflux protein Y11_RS17520 PF03313 Serine dehydratase alpha chain Y11_RS17525 PF01136 Peptidase family U32 Y11_RS17530 PF01136 Peptidase family U32 Y11_RS17535 PF02036 SCP-2 sterol transfer family Y11_RS17540 PF13508 Acetyltransferase (GNAT) domain Y11_RS17545 PF01541 GIY-YIG catalytic domain Y11_RS17550 PF13520 Amino acid permease Y11_RS17555 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y11_RS17555 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y11_RS17555 PF01276 Orn/Lys/Arg decarboxylase, major domain Y11_RS17560 PF07940 Heparinase II/III-like protein Y11_RS17560 PF05426 Alginate lyase Y11_RS17570 PF13416 Bacterial extracellular solute-binding protein Y11_RS17575 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS17580 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS17585 PF00005 ABC transporter Y11_RS17585 PF17912 MalK OB fold domain Y11_RS17585 PF03459 TOBE domain Y11_RS17605 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Y11_RS17610 PF13460 NAD(P)H-binding Y11_RS17615 PF12706 Beta-lactamase superfamily domain Y11_RS17625 PF07969 Amidohydrolase family Y11_RS17630 PF00005 ABC transporter Y11_RS17635 PF00005 ABC transporter Y11_RS17640 PF06007 Phosphonate metabolism protein PhnJ Y11_RS17650 PF05845 Bacterial phosphonate metabolism protein (PhnH) Y11_RS17655 PF06754 Phosphonate metabolism protein PhnG Y11_RS17660 PF07702 UTRA domain Y11_RS17660 PF00392 Bacterial regulatory proteins, gntR family Y11_RS17680 PF03477 ATP cone domain Y11_RS17680 PF13597 Anaerobic ribonucleoside-triphosphate reductase Y11_RS17690 PF00005 ABC transporter Y11_RS17690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_RS17695 PF00005 ABC transporter Y11_RS17695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_RS17700 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS17700 PF12911 N-terminal TM domain of oligopeptide transport permease C Y11_RS17705 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS17715 PF04074 YhcH/YjgK/YiaL Y11_RS17720 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y11_RS17720 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y11_RS17725 PF06877 Regulator of ribonuclease activity B Y11_RS17735 PF00583 Acetyltransferase (GNAT) family Y11_RS17740 PF08264 Anticodon-binding domain of tRNA Y11_RS17740 PF10458 Valyl tRNA synthetase tRNA binding arm Y11_RS17740 PF00133 tRNA synthetases class I (I, L, M and V) Y11_RS17745 PF04364 DNA polymerase III chi subunit, HolC Y11_RS17750 PF00883 Cytosol aminopeptidase family, catalytic domain Y11_RS17750 PF02789 Cytosol aminopeptidase family, N-terminal domain Y11_RS17755 PF03739 Lipopolysaccharide export system permease LptF/LptG Y11_RS17760 PF03739 Lipopolysaccharide export system permease LptF/LptG Y11_RS17795 PF01695 IstB-like ATP binding protein Y11_RS17800 PF00665 Integrase core domain Y11_RS17805 PF13091 PLD-like domain Y11_RS17805 PF13087 AAA domain Y11_RS17810 PF00583 Acetyltransferase (GNAT) family Y11_RS17845 PF10696 Protein of unknown function (DUF2501) Y11_RS17855 PF03992 Antibiotic biosynthesis monooxygenase Y11_RS17860 PF01791 DeoC/LacD family aldolase Y11_RS17865 PF13407 Periplasmic binding protein domain Y11_RS17870 PF02653 Branched-chain amino acid transport system / permease component Y11_RS17875 PF02653 Branched-chain amino acid transport system / permease component Y11_RS17880 PF00005 ABC transporter Y11_RS17885 PF04198 Putative sugar-binding domain Y11_RS17885 PF00325 Bacterial regulatory proteins, crp family Y11_RS17890 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y11_RS17890 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y11_RS17895 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y11_RS17905 PF13520 Amino acid permease Y11_RS17915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_RS17920 PF00873 AcrB/AcrD/AcrF family Y11_RS17925 PF00465 Iron-containing alcohol dehydrogenase Y11_RS17930 PF02733 Dak1 domain Y11_RS17935 PF02734 DAK2 domain Y11_RS17940 PF00391 PEP-utilising enzyme, mobile domain Y11_RS17940 PF00381 PTS HPr component phosphorylation site Y11_RS17940 PF05524 PEP-utilising enzyme, N-terminal Y11_RS17940 PF03610 PTS system fructose IIA component Y11_RS17950 PF16861 Carbamoyltransferase C-terminus Y11_RS17950 PF02543 Carbamoyltransferase N-terminus Y11_RS17975 PF01095 Pectinesterase Y11_RS17980 PF00989 PAS fold Y11_RS17980 PF02954 Bacterial regulatory protein, Fis family Y11_RS17980 PF00158 Sigma-54 interaction domain Y11_RS17985 PF00356 Bacterial regulatory proteins, lacI family Y11_RS17985 PF13407 Periplasmic binding protein domain Y11_RS17990 PF00251 Glycosyl hydrolases family 32 N-terminal domain Y11_RS17990 PF08244 Glycosyl hydrolases family 32 C terminal Y11_RS17995 PF00367 phosphotransferase system, EIIB Y11_RS17995 PF02378 Phosphotransferase system, EIIC Y11_RS18000 PF02264 LamB porin Y11_RS18000 PF11471 Maltoporin periplasmic N-terminal extension Y11_RS18005 PF00294 pfkB family carbohydrate kinase Y11_RS18015 PF07715 TonB-dependent Receptor Plug Domain Y11_RS18015 PF07660 Secretin and TonB N terminus short domain Y11_RS18015 PF00593 TonB dependent receptor Y11_RS18020 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS18025 PF07256 Protein of unknown function (DUF1435) Y11_RS18040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS18040 PF03466 LysR substrate binding domain Y11_RS18045 PF00248 Aldo/keto reductase family Y11_RS18050 PF08468 Methyltransferase small domain N-terminal Y11_RS18050 PF05175 Methyltransferase small domain Y11_RS18055 PF03603 DNA polymerase III psi subunit Y11_RS18060 PF00583 Acetyltransferase (GNAT) family Y11_RS18065 PF16658 Class II release factor RF3, C-terminal domain Y11_RS18065 PF00009 Elongation factor Tu GTP binding domain Y11_RS18065 PF03144 Elongation factor Tu domain 2 Y11_RS18070 PF04972 BON domain Y11_RS18075 PF01734 Patatin-like phospholipase Y11_RS18080 PF01026 TatD related DNase Y11_RS18085 PF01773 Na+ dependent nucleoside transporter N-terminus Y11_RS18085 PF07662 Na+ dependent nucleoside transporter C-terminus Y11_RS18085 PF07670 Nucleoside recognition Y11_RS18090 PF01791 DeoC/LacD family aldolase Y11_RS18095 PF02885 Glycosyl transferase family, helical bundle domain Y11_RS18095 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Y11_RS18095 PF00591 Glycosyl transferase family, a/b domain Y11_RS18100 PF01676 Metalloenzyme superfamily Y11_RS18105 PF01048 Phosphorylase superfamily Y11_RS18110 PF10144 Bacterial virulence factor haemolysin Y11_RS18115 PF18429 Domain of unknown function (DUF5609) Y11_RS18120 PF18073 Rubredoxin metal binding domain Y11_RS18135 PF01381 Helix-turn-helix Y11_RS18135 PF13521 AAA domain Y11_RS18140 PF00107 Zinc-binding dehydrogenase Y11_RS18140 PF08240 Alcohol dehydrogenase GroES-like domain Y11_RS18145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS18145 PF03466 LysR substrate binding domain Y11_RS18150 PF02661 Fic/DOC family Y11_RS18155 PF12848 ABC transporter Y11_RS18155 PF00005 ABC transporter Y11_RS18160 PF00691 OmpA family Y11_RS18165 PF17152 Periplasmic sensor domain Y11_RS18165 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS18175 PF00690 Cation transporter/ATPase, N-terminus Y11_RS18175 PF00689 Cation transporting ATPase, C-terminus Y11_RS18180 PF01464 Transglycosylase SLT domain Y11_RS18180 PF14718 Soluble lytic murein transglycosylase L domain Y11_RS18185 PF01371 Trp repressor protein Y11_RS18190 PF01931 Protein of unknown function DUF84 Y11_RS18195 PF00300 Histidine phosphatase superfamily (branch 1) Y11_RS18200 PF12833 Helix-turn-helix domain Y11_RS18200 PF06445 GyrI-like small molecule binding domain Y11_RS18205 PF05981 CreA protein Y11_RS18210 PF00486 Transcriptional regulatory protein, C terminal Y11_RS18210 PF00072 Response regulator receiver domain Y11_RS18220 PF00696 Amino acid kinase family Y11_RS18220 PF01842 ACT domain Y11_RS18220 PF13840 ACT domain Y11_RS18220 PF00742 Homoserine dehydrogenase Y11_RS18220 PF03447 Homoserine dehydrogenase, NAD binding domain Y11_RS18225 PF08544 GHMP kinases C terminal Y11_RS18225 PF00288 GHMP kinases N terminal domain Y11_RS18230 PF14821 Threonine synthase N terminus Y11_RS18230 PF00291 Pyridoxal-phosphate dependent enzyme Y11_RS18235 PF01548 Transposase Y11_RS18235 PF02371 Transposase IS116/IS110/IS902 family Y11_RS18240 PF03883 Peroxide stress protein YaaA Y11_RS18245 PF00923 Transaldolase/Fructose-6-phosphate aldolase Y11_RS18250 PF00994 Probable molybdopterin binding domain Y11_RS18255 PF07690 Major Facilitator Superfamily Y11_RS18260 PF00030 Beta/Gamma crystallin Y11_RS18265 PF01184 GPR1/FUN34/yaaH family Y11_RS18270 PF00012 Hsp70 protein Y11_RS18275 PF00684 DnaJ central domain Y11_RS18275 PF00226 DnaJ domain Y11_RS18275 PF01556 DnaJ C terminal domain Y11_RS18280 PF06965 Na+/H+ antiporter 1 Y11_RS18285 PF03466 LysR substrate binding domain Y11_RS18285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS18290 PF01649 Ribosomal protein S20 Y11_RS18300 PF06574 FAD synthetase Y11_RS18300 PF01687 Riboflavin kinase Y11_RS18305 PF08264 Anticodon-binding domain of tRNA Y11_RS18305 PF06827 Zinc finger found in FPG and IleRS Y11_RS18305 PF00133 tRNA synthetases class I (I, L, M and V) Y11_RS18310 PF01252 Signal peptidase (SPase) II Y11_RS18315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y11_RS18320 PF02401 LytB protein Y11_RS18325 PF05173 Dihydrodipicolinate reductase, C-terminus Y11_RS18325 PF01113 Dihydrodipicolinate reductase, N-terminus Y11_RS18330 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Y11_RS18330 PF00117 Glutamine amidotransferase class-I Y11_RS18335 PF02142 MGS-like domain Y11_RS18335 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Y11_RS18335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y11_RS18340 PF01810 LysE type translocator Y11_RS18345 PF06738 Putative threonine/serine exporter Y11_RS18350 PF12821 Threonine/Serine exporter, ThrE Y11_RS18355 PF00186 Dihydrofolate reductase Y11_RS18360 PF00149 Calcineurin-like phosphoesterase Y11_RS18365 PF04379 ApaG domain Y11_RS18370 PF00398 Ribosomal RNA adenine dimethylase Y11_RS18375 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Y11_RS18380 PF09312 SurA N-terminal domain Y11_RS18380 PF00639 PPIC-type PPIASE domain Y11_RS18385 PF03968 OstA-like protein Y11_RS18385 PF04453 LPS transport system D Y11_RS18390 PF05099 Tellurite resistance protein TerB Y11_RS18390 PF00226 DnaJ domain Y11_RS18395 PF00849 RNA pseudouridylate synthase Y11_RS18400 PF09134 Invasin, domain 3 Y11_RS18400 PF11924 Inverse autotransporter, beta-domain Y11_RS18400 PF02369 Bacterial Ig-like domain (group 1) Y11_RS18405 PF00271 Helicase conserved C-terminal domain Y11_RS18405 PF12137 RNA polymerase recycling family C-terminal Y11_RS18405 PF00176 SNF2 family N-terminal domain Y11_RS18405 PF18337 RapA N-terminal Tudor like domain Y11_RS18405 PF18339 RapA N-terminal Tudor like domain 1 Y11_RS18410 PF03104 DNA polymerase family B, exonuclease domain Y11_RS18410 PF00136 DNA polymerase family B Y11_RS18415 PF09335 SNARE associated Golgi protein Y11_RS18420 PF00005 ABC transporter Y11_RS18425 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS18445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_RS18445 PF12793 Sugar transport-related sRNA regulator N-term Y11_RS18450 PF04055 Radical SAM superfamily Y11_RS18455 PF02901 Pyruvate formate lyase-like Y11_RS18455 PF01228 Glycine radical Y11_RS18460 PF07690 Major Facilitator Superfamily Y11_RS18465 PF03222 Tryptophan/tyrosine permease family Y11_RS18480 PF00694 Aconitase C-terminal domain Y11_RS18485 PF00330 Aconitase family (aconitate hydratase) Y11_RS18490 PF00180 Isocitrate/isopropylmalate dehydrogenase Y11_RS18495 PF00682 HMGL-like Y11_RS18495 PF08502 LeuA allosteric (dimerisation) domain Y11_RS18500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS18500 PF03466 LysR substrate binding domain Y11_RS18505 PF00501 AMP-binding enzyme Y11_RS18510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_RS18510 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_RS18510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_RS18515 PF10369 Small subunit of acetolactate synthase Y11_RS18520 PF00356 Bacterial regulatory proteins, lacI family Y11_RS18520 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_RS18525 PF06610 L-alanine exporter Y11_RS18535 PF02381 MraZ protein, putative antitoxin-like Y11_RS18540 PF01795 MraW methylase family Y11_RS18545 PF04999 Cell division protein FtsL Y11_RS18550 PF00905 Penicillin binding protein transpeptidase domain Y11_RS18550 PF03717 Penicillin-binding Protein dimerisation domain Y11_RS18555 PF02875 Mur ligase family, glutamate ligase domain Y11_RS18555 PF08245 Mur ligase middle domain Y11_RS18555 PF01225 Mur ligase family, catalytic domain Y11_RS18560 PF08245 Mur ligase middle domain Y11_RS18560 PF02875 Mur ligase family, glutamate ligase domain Y11_RS18560 PF01225 Mur ligase family, catalytic domain Y11_RS18565 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Y11_RS18565 PF00953 Glycosyl transferase family 4 Y11_RS18570 PF08245 Mur ligase middle domain Y11_RS18570 PF02875 Mur ligase family, glutamate ligase domain Y11_RS18575 PF01098 Cell cycle protein Y11_RS18580 PF03033 Glycosyltransferase family 28 N-terminal domain Y11_RS18580 PF04101 Glycosyltransferase family 28 C-terminal domain Y11_RS18585 PF01225 Mur ligase family, catalytic domain Y11_RS18585 PF02875 Mur ligase family, glutamate ligase domain Y11_RS18585 PF08245 Mur ligase middle domain Y11_RS18590 PF07478 D-ala D-ala ligase C-terminus Y11_RS18590 PF01820 D-ala D-ala ligase N-terminus Y11_RS18595 PF08478 POTRA domain, FtsQ-type Y11_RS18595 PF03799 Cell division protein FtsQ Y11_RS18600 PF02491 SHS2 domain inserted in FTSA Y11_RS18605 PF00091 Tubulin/FtsZ family, GTPase domain Y11_RS18605 PF12327 FtsZ family, C-terminal domain Y11_RS18610 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Y11_RS18620 PF06558 Secretion monitor precursor protein (SecM) Y11_RS18625 PF07517 SecA DEAD-like domain Y11_RS18625 PF07516 SecA Wing and Scaffold domain Y11_RS18625 PF02810 SEC-C motif Y11_RS18625 PF01043 SecA preprotein cross-linking domain Y11_RS18630 PF00293 NUDIX domain Y11_RS18635 PF03884 DNA gyrase inhibitor YacG Y11_RS18640 PF07072 Cell division protein Y11_RS18645 PF01121 Dephospho-CoA kinase Y11_RS18650 PF00478 IMP dehydrogenase / GMP reductase domain Y11_RS18655 PF00482 Type II secretion system (T2SS), protein F Y11_RS18660 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Y11_RS18660 PF00437 Type II/IV secretion system protein Y11_RS18665 PF07963 Prokaryotic N-terminal methylation motif Y11_RS18670 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Y11_RS18670 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Y11_RS18675 PF01510 N-acetylmuramoyl-L-alanine amidase Y11_RS18680 PF17113 Regulatory signalling modulator protein AmpE Y11_RS18685 PF00324 Amino acid permease Y11_RS18690 PF00392 Bacterial regulatory proteins, gntR family Y11_RS18690 PF07729 FCD domain Y11_RS18695 PF00456 Transketolase, thiamine diphosphate binding domain Y11_RS18695 PF17831 Pyruvate dehydrogenase E1 component middle domain Y11_RS18700 PF00364 Biotin-requiring enzyme Y11_RS18700 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y11_RS18700 PF02817 e3 binding domain Y11_RS18705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y11_RS18705 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_RS18715 PF01965 DJ-1/PfpI family Y11_RS18715 PF12833 Helix-turn-helix domain Y11_RS18720 PF00593 TonB dependent receptor Y11_RS18720 PF07715 TonB-dependent Receptor Plug Domain Y11_RS18725 PF00330 Aconitase family (aconitate hydratase) Y11_RS18725 PF06434 Aconitate hydratase 2 N-terminus Y11_RS18725 PF11791 Aconitate B N-terminal domain Y11_RS18730 PF06062 Uncharacterised protein family (UPF0231) Y11_RS18735 PF00892 EamA-like transporter family Y11_RS18740 PF18624 CDI immunity protein Y11_RS18745 PF02675 S-adenosylmethionine decarboxylase Y11_RS18750 PF17284 Spermidine synthase tetramerisation domain Y11_RS18755 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) Y11_RS18760 PF07732 Multicopper oxidase Y11_RS18760 PF10518 TAT (twin-arginine translocation) pathway signal sequence Y11_RS18760 PF00394 Multicopper oxidase Y11_RS18760 PF07731 Multicopper oxidase Y11_RS18765 PF00156 Phosphoribosyl transferase domain Y11_RS18770 PF00484 Carbonic anhydrase Y11_RS18775 PF00005 ABC transporter Y11_RS18780 PF01061 ABC-2 type transporter Y11_RS18790 PF02261 Aspartate decarboxylase Y11_RS18795 PF02569 Pantoate-beta-alanine ligase Y11_RS18800 PF02548 Ketopantoate hydroxymethyltransferase Y11_RS18805 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Y11_RS18810 PF12626 Polymerase A arginine-rich C-terminus Y11_RS18810 PF01743 Poly A polymerase head domain Y11_RS18810 PF12627 Probable RNA and SrmB- binding site of polymerase A Y11_RS18815 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y11_RS18820 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y11_RS18825 PF17746 SfsA N-terminal OB domain Y11_RS18825 PF03749 Sugar fermentation stimulation protein RE domain Y11_RS18830 PF02834 LigT like Phosphoesterase Y11_RS18835 PF04408 Helicase associated domain (HA2) Y11_RS18835 PF00270 DEAD/DEAH box helicase Y11_RS18835 PF00271 Helicase conserved C-terminal domain Y11_RS18835 PF08482 ATP-dependent helicase C-terminal Y11_RS18840 PF14814 Bifunctional transglycosylase second domain Y11_RS18840 PF00912 Transglycosylase Y11_RS18840 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal Y11_RS18840 PF00905 Penicillin binding protein transpeptidase domain Y11_RS18845 PF00005 ABC transporter Y11_RS18850 PF01497 Periplasmic binding protein Y11_RS18855 PF01032 FecCD transport family Y11_RS18860 PF07690 Major Facilitator Superfamily Y11_RS18865 PF00202 Aminotransferase class-III Y11_RS18870 PF00654 Voltage gated chloride channel Y11_RS18875 PF01521 Iron-sulphur cluster biosynthesis Y11_RS18880 PF03458 UPF0126 domain Y11_RS18885 PF01497 Periplasmic binding protein Y11_RS18890 PF01048 Phosphorylase superfamily Y11_RS18895 PF01966 HD domain Y11_RS18895 PF13286 Phosphohydrolase-associated domain Y11_RS18900 PF00595 PDZ domain Y11_RS18910 PF05958 tRNA (Uracil-5-)-methyltransferase Y11_RS18910 PF01938 TRAM domain Y11_RS18915 PF04607 Region found in RelA / SpoT proteins Y11_RS18915 PF13291 ACT domain Y11_RS18915 PF02824 TGS domain Y11_RS18920 PF03819 MazG nucleotide pyrophosphohydrolase domain Y11_RS18925 PF06418 CTP synthase N-terminus Y11_RS18925 PF00117 Glutamine amidotransferase class-I Y11_RS18930 PF03952 Enolase, N-terminal domain Y11_RS18930 PF00113 Enolase, C-terminal TIM barrel domain Y11_RS18935 PF01812 5-formyltetrahydrofolate cyclo-ligase family Y11_RS18940 PF05164 Cell division protein ZapA Y11_RS18945 PF03695 Uncharacterised protein family (UPF0149) Y11_RS18950 PF00557 Metallopeptidase family M24 Y11_RS18950 PF05195 Aminopeptidase P, N-terminal domain Y11_RS18955 PF01494 FAD binding domain Y11_RS18960 PF01494 FAD binding domain Y11_RS18965 PF08669 Glycine cleavage T-protein C-terminal barrel domain Y11_RS18965 PF01571 Aminomethyltransferase folate-binding domain Y11_RS18970 PF01597 Glycine cleavage H-protein Y11_RS18975 PF02347 Glycine cleavage system P-protein Y11_RS19000 PF03006 Haemolysin-III related Y11_RS19005 PF01548 Transposase Y11_RS19005 PF02371 Transposase IS116/IS110/IS902 family Y11_RS19015 PF01571 Aminomethyltransferase folate-binding domain Y11_RS19020 PF03937 Flavinator of succinate dehydrogenase Y11_RS19025 PF07254 Membrane-bound toxin component of toxin-antitoxin system Y11_RS19030 PF00072 Response regulator receiver domain Y11_RS19030 PF00486 Transcriptional regulatory protein, C terminal Y11_RS19040 PF06123 Inner membrane protein CreD Y11_RS19045 PF00258 Flavodoxin Y11_RS19050 PF00589 Phage integrase family Y11_RS19050 PF02899 Phage integrase, N-terminal SAM-like domain Y11_RS19055 PF10411 Disulfide bond isomerase protein N-terminus Y11_RS19055 PF13098 Thioredoxin-like domain Y11_RS19060 PF17768 RecJ OB domain Y11_RS19060 PF02272 DHHA1 domain Y11_RS19060 PF01368 DHH family Y11_RS19065 PF00472 RF-1 domain Y11_RS19065 PF03462 PCRF domain Y11_RS19070 PF00152 tRNA synthetases class II (D, K and N) Y11_RS19070 PF01336 OB-fold nucleic acid binding domain Y11_RS19090 PF15723 Motility quorum-sensing regulator, toxin of MqsA Y11_RS19095 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA Y11_RS19100 PF00872 Transposase, Mutator family Y11_RS19115 PF13474 SnoaL-like domain Y11_RS19120 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS19120 PF08448 PAS fold Y11_RS19125 PF01548 Transposase Y11_RS19125 PF02371 Transposase IS116/IS110/IS902 family Y11_RS19135 PF01556 DnaJ C terminal domain Y11_RS19135 PF00226 DnaJ domain Y11_RS19150 PF01638 HxlR-like helix-turn-helix Y11_RS19155 PF00484 Carbonic anhydrase Y11_RS19170 PF03958 Bacterial type II/III secretion system short domain Y11_RS19170 PF00263 Bacterial type II and III secretion system protein Y11_RS19175 PF00263 Bacterial type II and III secretion system protein Y11_RS19175 PF03958 Bacterial type II/III secretion system short domain Y11_RS19180 PF00437 Type II/IV secretion system protein Y11_RS19190 PF08334 Type II secretion system (T2SS), protein G Y11_RS19190 PF07963 Prokaryotic N-terminal methylation motif Y11_RS19260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS19260 PF03466 LysR substrate binding domain Y11_RS19265 PF07690 Major Facilitator Superfamily Y11_RS19270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS19270 PF03466 LysR substrate binding domain Y11_RS19275 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y11_RS19275 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Y11_RS19280 PF00356 Bacterial regulatory proteins, lacI family Y11_RS19285 PF00384 Molybdopterin oxidoreductase Y11_RS19285 PF01568 Molydopterin dinucleotide binding domain Y11_RS19290 PF02371 Transposase IS116/IS110/IS902 family Y11_RS19290 PF01548 Transposase Y11_RS19295 PF00501 AMP-binding enzyme Y11_RS19295 PF13193 AMP-binding enzyme C-terminal domain Y11_RS19295 PF01553 Acyltransferase Y11_RS19300 PF07690 Major Facilitator Superfamily Y11_RS19305 PF00248 Aldo/keto reductase family Y11_RS19310 PF03741 Integral membrane protein TerC family Y11_RS19315 PF02976 DNA mismatch repair enzyme MutH Y11_RS19320 PF00293 NUDIX domain Y11_RS19325 PF01590 GAF domain Y11_RS19325 PF02896 PEP-utilising enzyme, TIM barrel domain Y11_RS19325 PF00391 PEP-utilising enzyme, mobile domain Y11_RS19325 PF05524 PEP-utilising enzyme, N-terminal Y11_RS19330 PF01790 Prolipoprotein diacylglyceryl transferase Y11_RS19335 PF00303 Thymidylate synthase Y11_RS19340 PF07963 Prokaryotic N-terminal methylation motif Y11_RS19355 PF12528 Type II secretion prepilin peptidase dependent protein C Y11_RS19355 PF07963 Prokaryotic N-terminal methylation motif Y11_RS19360 PF17946 RecC C-terminal domain Y11_RS19365 PF05193 Peptidase M16 inactive domain Y11_RS19365 PF16187 Middle or third domain of peptidase_M16 Y11_RS19365 PF00675 Insulinase (Peptidase family M16) Y11_RS19370 PF00580 UvrD/REP helicase N-terminal domain Y11_RS19370 PF13361 UvrD-like helicase C-terminal domain Y11_RS19370 PF12705 PD-(D/E)XK nuclease superfamily Y11_RS19375 PF13538 UvrD-like helicase C-terminal domain Y11_RS19380 PF02371 Transposase IS116/IS110/IS902 family Y11_RS19380 PF01548 Transposase Y11_RS19385 PF00583 Acetyltransferase (GNAT) family Y11_RS19385 PF00696 Amino acid kinase family Y11_RS19390 PF11741 AMIN domain Y11_RS19390 PF01520 N-acetylmuramoyl-L-alanine amidase Y11_RS19400 PF06725 3D domain Y11_RS19400 PF03562 MltA specific insert domain Y11_RS19405 PF00899 ThiF family Y11_RS19410 PF02657 Fe-S metabolism associated domain Y11_RS19415 PF00266 Aminotransferase class-V Y11_RS19420 PF06004 Bacterial protein of unknown function (DUF903) Y11_RS19425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS19425 PF03466 LysR substrate binding domain Y11_RS19430 PF04241 Protein of unknown function (DUF423) Y11_RS19435 PF01728 FtsJ-like methyltransferase Y11_RS19435 PF18125 RlmM ferredoxin-like domain Y11_RS19440 PF01548 Transposase Y11_RS19440 PF02371 Transposase IS116/IS110/IS902 family Y11_RS19445 PF00872 Transposase, Mutator family Y11_RS19450 PF01367 5'-3' exonuclease, C-terminal SAM fold Y11_RS19450 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Y11_RS19455 PF03641 Possible lysine decarboxylase Y11_RS19455 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Y11_RS19455 PF11892 Domain of unknown function (DUF3412) Y11_RS19460 PF14489 QueF-like protein Y11_RS19460 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Y11_RS19465 PF07348 Syd protein (SUKH-2) Y11_RS19470 PF04287 tRNA pseudouridine synthase C Y11_RS19475 PF00849 RNA pseudouridylate synthase Y11_RS19480 PF00258 Flavodoxin Y11_RS19485 PF11944 Protein of unknown function (DUF3461) Y11_RS19490 PF14602 Hexapeptide repeat of succinyl-transferase Y11_RS19490 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Y11_RS19490 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_RS19495 PF01909 Nucleotidyltransferase domain Y11_RS19495 PF01966 HD domain Y11_RS19495 PF01842 ACT domain Y11_RS19495 PF08335 GlnD PII-uridylyltransferase Y11_RS19500 PF00557 Metallopeptidase family M24 Y11_RS19505 PF00318 Ribosomal protein S2 Y11_RS19510 PF00889 Elongation factor TS Y11_RS19515 PF00696 Amino acid kinase family Y11_RS19520 PF01765 Ribosome recycling factor Y11_RS19525 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Y11_RS19525 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Y11_RS19525 PF13288 DXP reductoisomerase C-terminal domain Y11_RS19530 PF01255 Putative undecaprenyl diphosphate synthase Y11_RS19540 PF02163 Peptidase family M50 Y11_RS19540 PF17820 PDZ domain Y11_RS19545 PF01103 Surface antigen Y11_RS19545 PF07244 Surface antigen variable number repeat Y11_RS19550 PF03938 Outer membrane protein (OmpH-like) Y11_RS19555 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Y11_RS19555 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_RS19560 PF07977 FabA-like domain Y11_RS19565 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Y11_RS19565 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_RS19570 PF02684 Lipid-A-disaccharide synthetase Y11_RS19575 PF01351 Ribonuclease HII Y11_RS19580 PF01336 OB-fold nucleic acid binding domain Y11_RS19580 PF14579 Helix-hairpin-helix motif Y11_RS19580 PF02811 PHP domain Y11_RS19580 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Y11_RS19580 PF07733 Bacterial DNA polymerase III alpha NTPase domain Y11_RS19585 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Y11_RS19590 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y11_RS19590 PF01276 Orn/Lys/Arg decarboxylase, major domain Y11_RS19590 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y11_RS19595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y11_RS19600 PF11734 TilS substrate C-terminal domain Y11_RS19600 PF09179 TilS substrate binding domain Y11_RS19600 PF01171 PP-loop family Y11_RS19605 PF00034 Cytochrome c Y11_RS19610 PF07073 Modulator of Rho-dependent transcription termination (ROF) Y11_RS19615 PF06786 Uncharacterised protein family (UPF0253) Y11_RS19620 PF07152 YaeQ protein Y11_RS19625 PF00472 RF-1 domain Y11_RS19630 PF04170 NlpE N-terminal domain Y11_RS19630 PF17185 NlpE C-terminal OB domain Y11_RS19635 PF03129 Anticodon binding domain Y11_RS19635 PF04073 Aminoacyl-tRNA editing domain Y11_RS19635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y11_RS19640 PF18389 TrmO C-terminal domain Y11_RS19640 PF01980 tRNA-methyltransferase O Y11_RS19645 PF16358 RcsF lipoprotein Y11_RS19650 PF03180 NLPA lipoprotein Y11_RS19655 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS19660 PF09383 NIL domain Y11_RS19660 PF00005 ABC transporter Y11_RS19695 PF00872 Transposase, Mutator family Y11_RS19700 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_RS19700 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_RS19705 PF00248 Aldo/keto reductase family Y11_RS19710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_RS19710 PF03466 LysR substrate binding domain Y11_RS19715 PF07690 Major Facilitator Superfamily Y11_RS19720 PF03372 Endonuclease/Exonuclease/phosphatase family Y11_RS19725 PF02371 Transposase IS116/IS110/IS902 family Y11_RS19725 PF01548 Transposase Y11_RS19730 PF01464 Transglycosylase SLT domain Y11_RS19730 PF01476 LysM domain Y11_RS19735 PF00753 Metallo-beta-lactamase superfamily Y11_RS19735 PF16123 Hydroxyacylglutathione hydrolase C-terminus Y11_RS19740 PF08241 Methyltransferase domain Y11_RS19745 PF00075 RNase H Y11_RS19750 PF00929 Exonuclease Y11_RS19760 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y11_RS19765 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS19770 PF00571 CBS domain Y11_RS19770 PF00005 ABC transporter Y11_RS19775 PF00268 Ribonucleotide reductase, small chain Y11_RS19780 PF02867 Ribonucleotide reductase, barrel domain Y11_RS19780 PF00317 Ribonucleotide reductase, all-alpha domain Y11_RS19780 PF08343 Ribonucleotide reductase N-terminal Y11_RS19785 PF07972 NrdI Flavodoxin like Y11_RS19795 PF02627 Carboxymuconolactone decarboxylase family Y11_RS19800 PF00155 Aminotransferase class I and II Y11_RS19800 PF00392 Bacterial regulatory proteins, gntR family Y11_RS19805 PF05957 Bacterial protein of unknown function (DUF883) Y11_RS19815 PF06392 Acid shock protein repeat Y11_RS19825 PF12833 Helix-turn-helix domain Y11_RS19830 PF07690 Major Facilitator Superfamily Y11_RS19835 PF09400 Protein of unknown function (DUF2002) Y11_RS19850 PF00313 'Cold-shock' DNA-binding domain Y11_RS19880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_RS19885 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS19890 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS19890 PF12911 N-terminal TM domain of oligopeptide transport permease C Y11_RS19895 PF00005 ABC transporter Y11_RS19900 PF00005 ABC transporter Y11_RS19910 PF00547 Urease, gamma subunit Y11_RS19915 PF00699 Urease beta subunit Y11_RS19920 PF00449 Urease alpha-subunit, N-terminal domain Y11_RS19920 PF01979 Amidohydrolase family Y11_RS19925 PF05194 UreE urease accessory protein, C-terminal domain Y11_RS19925 PF02814 UreE urease accessory protein, N-terminal domain Y11_RS19930 PF01730 UreF Y11_RS19935 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y11_RS19940 PF01774 UreD urease accessory protein Y11_RS19945 PF03253 Urea transporter Y11_RS19950 PF03824 High-affinity nickel-transport protein Y11_RS19955 PF06411 HdeA/HdeB family Y11_RS19960 PF07885 Ion channel Y11_RS19960 PF02254 TrkA-N domain Y11_RS19965 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Y11_RS19970 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Y11_RS19975 PF00248 Aldo/keto reductase family Y11_RS19980 PF02371 Transposase IS116/IS110/IS902 family Y11_RS19980 PF01548 Transposase Y11_RS19985 PF02371 Transposase IS116/IS110/IS902 family Y11_RS19985 PF01548 Transposase Y11_RS19990 PF07995 Glucose / Sorbosone dehydrogenase Y11_RS19995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y11_RS20000 PF02378 Phosphotransferase system, EIIC Y11_RS20005 PF00232 Glycosyl hydrolase family 1 Y11_RS20010 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Y11_RS20015 PF12833 Helix-turn-helix domain Y11_RS20015 PF07883 Cupin domain Y11_RS20020 PF04794 YdjC-like protein Y11_RS20025 PF00916 Sulfate permease family Y11_RS20025 PF01740 STAS domain Y11_RS20035 PF00872 Transposase, Mutator family Y11_RS20040 PF00589 Phage integrase family Y11_RS20040 PF13356 Arm DNA-binding domain Y11_RS20045 PF01668 SmpB protein Y11_RS20050 PF03364 Polyketide cyclase / dehydrase and lipid transport Y11_RS20055 PF03658 RnfH family Ubiquitin Y11_RS20060 PF04355 SmpA / OmlA family Y11_RS20065 PF02463 RecF/RecN/SMC N terminal domain Y11_RS20070 PF01513 ATP-NAD kinase Y11_RS20075 PF01025 GrpE Y11_RS20080 PF03167 Uracil DNA glycosylase superfamily Y11_RS20085 PF01228 Glycine radical Y11_RS20105 PF12796 Ankyrin repeats (3 copies) Y11_RS20110 PF01548 Transposase Y11_RS20110 PF02371 Transposase IS116/IS110/IS902 family Y11_RS20115 PF02371 Transposase IS116/IS110/IS902 family Y11_RS20115 PF01548 Transposase Y11_RS20120 PF00270 DEAD/DEAH box helicase Y11_RS20120 PF00271 Helicase conserved C-terminal domain Y11_RS20125 PF05175 Methyltransferase small domain Y11_RS20130 PF02910 Fumarate reductase flavoprotein C-term Y11_RS20130 PF00890 FAD binding domain Y11_RS20135 PF04542 Sigma-70 region 2 Y11_RS20135 PF08281 Sigma-70, region 4 Y11_RS20140 PF03872 Anti sigma-E protein RseA, N-terminal domain Y11_RS20140 PF03873 Anti sigma-E protein RseA, C-terminal domain Y11_RS20145 PF17188 MucB/RseB C-terminal domain Y11_RS20145 PF03888 MucB/RseB N-terminal domain Y11_RS20160 PF03144 Elongation factor Tu domain 2 Y11_RS20160 PF00009 Elongation factor Tu GTP binding domain Y11_RS20160 PF00679 Elongation factor G C-terminus Y11_RS20160 PF06421 GTP-binding protein LepA C-terminus Y11_RS20165 PF10502 Signal peptidase, peptidase S26 Y11_RS20170 PF00035 Double-stranded RNA binding motif Y11_RS20170 PF14622 Ribonuclease-III-like Y11_RS20175 PF07650 KH domain Y11_RS20175 PF01926 50S ribosome-binding GTPase Y11_RS20180 PF02565 Recombination protein O C terminal Y11_RS20180 PF11967 Recombination protein O N terminal Y11_RS20185 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Y11_RS20190 PF01648 4'-phosphopantetheinyl transferase superfamily Y11_RS20195 PF02447 GntP family permease Y11_RS20200 PF12838 4Fe-4S dicluster domain Y11_RS20205 PF01418 Helix-turn-helix domain, rpiR family Y11_RS20205 PF01380 SIS domain Y11_RS20210 PF01380 SIS domain Y11_RS20225 PF14437 MafB19-like deaminase Y11_RS20230 PF01464 Transglycosylase SLT domain Y11_RS20230 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_RS20235 PF02769 AIR synthase related protein, C-terminal domain Y11_RS20235 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Y11_RS20235 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Y11_RS20245 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS20245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS20250 PF13942 YfhG lipoprotein Y11_RS20255 PF00158 Sigma-54 interaction domain Y11_RS20255 PF00072 Response regulator receiver domain Y11_RS20260 PF02540 NAD synthase Y11_RS20260 PF00795 Carbon-nitrogen hydrolase Y11_RS20265 PF00543 Nitrogen regulatory protein P-II Y11_RS20270 PF10797 Protein of unknown function Y11_RS20275 PF10941 Protein of unknown function DUF2620 Y11_RS20280 PF02126 Phosphotriesterase family Y11_RS20285 PF01168 Alanine racemase, N-terminal domain Y11_RS20295 PF14502 Helix-turn-helix domain Y11_RS20295 PF14503 YhfZ C-terminal domain Y11_RS20300 PF00175 Oxidoreductase NAD-binding domain Y11_RS20300 PF00042 Globin Y11_RS20300 PF00970 Oxidoreductase FAD-binding domain Y11_RS20305 PF00464 Serine hydroxymethyltransferase Y11_RS20310 PF12832 MFS_1 like family Y11_RS20315 PF00874 PRD domain Y11_RS20320 PF06226 Protein of unknown function (DUF1007) Y11_RS20325 PF03824 High-affinity nickel-transport protein Y11_RS20330 PF00459 Inositol monophosphatase family Y11_RS20335 PF00588 SpoU rRNA Methylase family Y11_RS20340 PF02082 Transcriptional regulator Y11_RS20345 PF00266 Aminotransferase class-V Y11_RS20350 PF01592 NifU-like N terminal domain Y11_RS20355 PF01521 Iron-sulphur cluster biosynthesis Y11_RS20360 PF00226 DnaJ domain Y11_RS20360 PF07743 HSCB C-terminal oligomerisation domain Y11_RS20365 PF00012 Hsp70 protein Y11_RS20370 PF00111 2Fe-2S iron-sulfur cluster binding domain Y11_RS20375 PF04384 Iron-sulphur cluster assembly Y11_RS20380 PF12404 Peptidase Y11_RS20380 PF00883 Cytosol aminopeptidase family, catalytic domain Y11_RS20385 PF07179 SseB protein N-terminal domain Y11_RS20385 PF14581 SseB protein C-terminal domain Y11_RS20400 PF00207 Alpha-2-macroglobulin family Y11_RS20400 PF07703 Alpha-2-macroglobulin bait region domain Y11_RS20400 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Y11_RS20400 PF17962 Bacterial macroglobulin domain 6 Y11_RS20400 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Y11_RS20400 PF01835 MG2 domain Y11_RS20400 PF07678 A-macroglobulin TED domain Y11_RS20400 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Y11_RS20400 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain Y11_RS20405 PF00905 Penicillin binding protein transpeptidase domain Y11_RS20405 PF06832 Penicillin-Binding Protein C-terminus Family Y11_RS20405 PF00912 Transglycosylase Y11_RS20415 PF00334 Nucleoside diphosphate kinase Y11_RS20420 PF04055 Radical SAM superfamily Y11_RS20430 PF13464 Domain of unknown function (DUF4115) Y11_RS20435 PF04551 GcpE protein Y11_RS20440 PF13393 Histidyl-tRNA synthetase Y11_RS20440 PF03129 Anticodon binding domain Y11_RS20445 PF09976 Tetratricopeptide repeat-like domain Y11_RS20450 PF13360 PQQ-like domain Y11_RS20460 PF01926 50S ribosome-binding GTPase Y11_RS20460 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Y11_RS20470 PF07191 zinc-ribbons Y11_RS20475 PF13742 OB-fold nucleic acid binding domain Y11_RS20475 PF02601 Exonuclease VII, large subunit Y11_RS20480 PF00571 CBS domain Y11_RS20480 PF00478 IMP dehydrogenase / GMP reductase domain Y11_RS20485 PF00117 Glutamine amidotransferase class-I Y11_RS20485 PF00958 GMP synthase C terminal domain Y11_RS20485 PF02540 NAD synthase Y11_RS20500 PF05199 GMC oxidoreductase Y11_RS20500 PF00732 GMC oxidoreductase Y11_RS20505 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y11_RS20505 PF00034 Cytochrome c Y11_RS20520 PF08543 Phosphomethylpyrimidine kinase Y11_RS20535 PF01380 SIS domain Y11_RS20535 PF00571 CBS domain Y11_RS20540 PF08220 DeoR-like helix-turn-helix domain Y11_RS20540 PF00455 DeoR C terminal sensor domain Y11_RS20545 PF06923 Glucitol operon activator protein (GutM) Y11_RS20550 PF00106 short chain dehydrogenase Y11_RS20555 PF03829 PTS system glucitol/sorbitol-specific IIA component Y11_RS20560 PF07663 Sorbitol phosphotransferase enzyme II C-terminus Y11_RS20560 PF03612 Sorbitol phosphotransferase enzyme II N-terminus Y11_RS20565 PF03608 PTS system enzyme II sorbitol-specific factor Y11_RS20570 PF00781 Diacylglycerol kinase catalytic domain Y11_RS20575 PF16325 Peptidase family U32 C-terminal domain Y11_RS20575 PF01136 Peptidase family U32 Y11_RS20580 PF07411 Domain of unknown function (DUF1508) Y11_RS20585 PF00072 Response regulator receiver domain Y11_RS20585 PF00486 Transcriptional regulatory protein, C terminal Y11_RS20590 PF00672 HAMP domain Y11_RS20590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_RS20590 PF00512 His Kinase A (phospho-acceptor) domain Y11_RS20595 PF07690 Major Facilitator Superfamily Y11_RS20600 PF00873 AcrB/AcrD/AcrF family Y11_RS20605 PF00873 AcrB/AcrD/AcrF family Y11_RS20610 PF13533 Biotin-lipoyl like Y11_RS20620 PF00012 Hsp70 protein Y11_RS20625 PF08448 PAS fold Y11_RS20625 PF00563 EAL domain Y11_RS20625 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS20625 PF05231 MASE1 Y11_RS20625 PF13426 PAS domain Y11_RS20625 PF08447 PAS fold Y11_RS20630 PF00005 ABC transporter Y11_RS20635 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS20640 PF00528 Binding-protein-dependent transport system inner membrane component Y11_RS20645 PF02503 Polyphosphate kinase middle domain Y11_RS20645 PF13090 Polyphosphate kinase C-terminal domain 2 Y11_RS20645 PF17941 Polyphosphate kinase C-terminal domain 1 Y11_RS20645 PF13089 Polyphosphate kinase N-terminal domain Y11_RS20650 PF02541 Ppx/GppA phosphatase family Y11_RS20660 PF00571 CBS domain Y11_RS20660 PF03448 MgtE intracellular N domain Y11_RS20660 PF01769 Divalent cation transporter Y11_RS20665 PF08447 PAS fold Y11_RS20665 PF00990 Diguanylate cyclase, GGDEF domain Y11_RS20665 PF00563 EAL domain Y11_RS20665 PF13426 PAS domain Y11_RS20665 PF05231 MASE1 Y11_RS20665 PF08448 PAS fold Y11_RS20670 PF13302 Acetyltransferase (GNAT) domain Y11_RS20675 PF00551 Formyl transferase Y11_RS20680 PF02769 AIR synthase related protein, C-terminal domain Y11_RS20680 PF00586 AIR synthase related protein, N-terminal domain Y11_RS20690 PF00860 Permease family Y11_RS20705 PF01435 Peptidase family M48 Y11_RS20705 PF07720 Tetratricopeptide repeat Y11_RS20770 PF03245 Bacteriophage Rz lysis protein Y11_RS20800 PF02557 D-alanyl-D-alanine carboxypeptidase Y11_RS20845 PF00873 AcrB/AcrD/AcrF family Y11_RS20880 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS20880 PF00384 Molybdopterin oxidoreductase Y11_RS20880 PF01568 Molydopterin dinucleotide binding domain Y11_RS20880 PF10518 TAT (twin-arginine translocation) pathway signal sequence Y11_RS20895 PF03264 NapC/NirT cytochrome c family, N-terminal region Y11_RS20940 PF01218 Coproporphyrinogen III oxidase Y11_RS21150 PF12826 Helix-hairpin-helix motif Y11_RS21150 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Y11_RS21150 PF03120 NAD-dependent DNA ligase OB-fold domain Y11_RS21150 PF00533 BRCA1 C Terminus (BRCT) domain Y11_RS21150 PF01653 NAD-dependent DNA ligase adenylation domain Y11_RS21180 PF07690 Major Facilitator Superfamily