Y11_RS00035 SM01130 Y11_RS00035 Y11_RS00165 SM00421 helix_turn_helix, Lux Regulon Y11_RS00165 SM00448 cheY-homologous receiver domain Y11_RS00180 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS00200 SM00919 Malic enzyme, NAD binding domain Y11_RS00200 SM01274 Y11_RS00200 Y11_RS00255 SM01130 Y11_RS00255 Y11_RS00300 SM00382 ATPases associated with a variety of cellular activities Y11_RS00325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS00325 SM00387 Histidine kinase-like ATPases Y11_RS00325 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS00355 SM00771 ZipA, C-terminal domain (FtsZ-binding) Y11_RS00360 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y11_RS00360 SM00292 breast cancer carboxy-terminal domain Y11_RS00360 SM00532 Ligase N family Y11_RS00465 SM00448 cheY-homologous receiver domain Y11_RS00465 SM00850 LytTr DNA-binding domain Y11_RS00470 SM00387 Histidine kinase-like ATPases Y11_RS00510 SM00382 ATPases associated with a variety of cellular activities Y11_RS00555 SM00382 ATPases associated with a variety of cellular activities Y11_RS00590 SM00354 helix_turn _helix lactose operon repressor Y11_RS00635 SM00382 ATPases associated with a variety of cellular activities Y11_RS00710 SM00463 Small MutS-related domain Y11_RS00750 SM00825 Beta-ketoacyl synthase Y11_RS00790 SM00354 helix_turn _helix lactose operon repressor Y11_RS00830 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS00845 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS00855 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y11_RS00900 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS00915 SM00382 ATPases associated with a variety of cellular activities Y11_RS00935 SM00052 Putative diguanylate phosphodiesterase Y11_RS00970 SM00354 helix_turn _helix lactose operon repressor Y11_RS01010 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_RS01045 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Y11_RS01050 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS01050 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Y11_RS01115 SM00354 helix_turn _helix lactose operon repressor Y11_RS01165 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Y11_RS01175 SM01060 Y11_RS01175 Y11_RS01190 SM00852 Probable molybdopterin binding domain Y11_RS01245 SM00434 DNA Topoisomerase IV Y11_RS01250 SM00387 Histidine kinase-like ATPases Y11_RS01250 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS01250 SM00448 cheY-homologous receiver domain Y11_RS01255 SM00421 helix_turn_helix, Lux Regulon Y11_RS01255 SM00448 cheY-homologous receiver domain Y11_RS01260 SM00387 Histidine kinase-like ATPases Y11_RS01260 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS01305 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_RS01305 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS01320 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS01350 SM01057 Eukaryotic-type carbonic anhydrase Y11_RS01395 SM00487 DEAD-like helicases superfamily Y11_RS01395 SM00490 helicase superfamily c-terminal domain Y11_RS01400 SM00363 S4 RNA-binding domain Y11_RS01415 SM00382 ATPases associated with a variety of cellular activities Y11_RS01435 SM00052 Putative diguanylate phosphodiesterase Y11_RS01450 SM00014 Acid phosphatase homologues Y11_RS01455 SM00833 Cobalamin synthesis protein cobW C-terminal domain Y11_RS01465 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS01465 SM00895 Y11_RS01465 Y11_RS01485 SM00841 Elongation factor P, C-terminal Y11_RS01485 SM01185 Y11_RS01485 Y11_RS01530 SM00862 Transcriptional regulatory protein, C terminal Y11_RS01555 SM00518 AP endonuclease family 2 Y11_RS01590 SM00382 ATPases associated with a variety of cellular activities Y11_RS01620 SM00382 ATPases associated with a variety of cellular activities Y11_RS01620 SM00930 Y11_RS01620 Y11_RS01635 SM00116 Domain in cystathionine beta-synthase and other proteins. Y11_RS01640 SM00936 Penicillin-binding protein 5, C-terminal domain Y11_RS01660 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_RS01660 SM01134 Y11_RS01660 Y11_RS01665 SM01133 Y11_RS01665 Y11_RS01670 SM00014 Acid phosphatase homologues Y11_RS01705 SM00382 ATPases associated with a variety of cellular activities Y11_RS01730 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS01730 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y11_RS01745 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS01745 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y11_RS01750 SM00382 ATPases associated with a variety of cellular activities Y11_RS01815 SM00382 ATPases associated with a variety of cellular activities Y11_RS01820 SM00357 Cold shock protein domain Y11_RS01830 SM00382 ATPases associated with a variety of cellular activities Y11_RS01830 SM01086 C-terminal, D2-small domain, of ClpB protein Y11_RS01835 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_RS01845 SM00382 ATPases associated with a variety of cellular activities Y11_RS01850 SM00382 ATPases associated with a variety of cellular activities Y11_RS01860 SM00344 helix_turn_helix ASNC type Y11_RS01865 SM00843 Y11_RS01865 Y11_RS01875 SM00382 ATPases associated with a variety of cellular activities Y11_RS01955 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_RS01960 SM00411 bacterial (prokaryotic) histone like domain Y11_RS01965 SM00849 Metallo-beta-lactamase superfamily Y11_RS01970 SM00382 ATPases associated with a variety of cellular activities Y11_RS01980 SM01150 Y11_RS01980 Y11_RS01985 SM00357 Cold shock protein domain Y11_RS01990 SM00357 Cold shock protein domain Y11_RS02045 SM00849 Metallo-beta-lactamase superfamily Y11_RS02050 SM00052 Putative diguanylate phosphodiesterase Y11_RS02100 SM00981 Y11_RS02100 Y11_RS02105 SM00382 ATPases associated with a variety of cellular activities Y11_RS02125 SM00825 Beta-ketoacyl synthase Y11_RS02180 SM00851 MGS-like domain Y11_RS02190 SM00881 CoA binding domain Y11_RS02195 SM00992 Hemimethylated DNA-binding protein YccV like Y11_RS02200 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Y11_RS02270 SM00421 helix_turn_helix, Lux Regulon Y11_RS02285 SM01091 Transporter associated domain Y11_RS02345 SM00421 helix_turn_helix, Lux Regulon Y11_RS02345 SM00448 cheY-homologous receiver domain Y11_RS02350 SM00387 Histidine kinase-like ATPases Y11_RS02365 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS02375 SM00450 Rhodanese Homology Domain Y11_RS02385 SM00421 helix_turn_helix, Lux Regulon Y11_RS02415 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_RS02420 SM00363 S4 RNA-binding domain Y11_RS02450 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Y11_RS02455 SM00822 Y11_RS02455 Y11_RS02465 SM00825 Beta-ketoacyl synthase Y11_RS02505 SM00382 ATPases associated with a variety of cellular activities Y11_RS02570 SM00487 DEAD-like helicases superfamily Y11_RS02570 SM00490 helicase superfamily c-terminal domain Y11_RS02570 SM00982 Y11_RS02570 Y11_RS02570 SM01058 CarD-like/TRCF domain Y11_RS02580 SM00382 ATPases associated with a variety of cellular activities Y11_RS02605 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Y11_RS02610 SM00387 Histidine kinase-like ATPases Y11_RS02610 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS02615 SM00448 cheY-homologous receiver domain Y11_RS02615 SM00862 Transcriptional regulatory protein, C terminal Y11_RS02650 SM01329 Y11_RS02650 Y11_RS02710 SM00640 Glycosyl hydrolases family 32 Y11_RS02715 SM00354 helix_turn _helix lactose operon repressor Y11_RS02725 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_RS02725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_RS02775 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS02795 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_RS02795 SM00091 PAS domain Y11_RS02795 SM00267 diguanylate cyclase Y11_RS02810 SM00090 RIO-like kinase Y11_RS02815 SM00382 ATPases associated with a variety of cellular activities Y11_RS02835 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS02885 SM00357 Cold shock protein domain Y11_RS02910 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_RS02910 SM00091 PAS domain Y11_RS02910 SM00267 diguanylate cyclase Y11_RS02945 SM01091 Transporter associated domain Y11_RS02975 SM00487 DEAD-like helicases superfamily Y11_RS02975 SM00490 helicase superfamily c-terminal domain Y11_RS02985 SM01022 Y11_RS02985 Y11_RS03000 SM00479 Y11_RS03000 Y11_RS03075 SM00421 helix_turn_helix, Lux Regulon Y11_RS03130 SM00448 cheY-homologous receiver domain Y11_RS03135 SM00387 Histidine kinase-like ATPases Y11_RS03140 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_RS03140 SM01134 Y11_RS03140 Y11_RS03200 SM00382 ATPases associated with a variety of cellular activities Y11_RS03280 SM00836 DALR anticodon binding domain Y11_RS03280 SM01016 Arginyl tRNA synthetase N terminal dom Y11_RS03330 SM01022 Y11_RS03330 Y11_RS03340 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_RS03340 SM00091 PAS domain Y11_RS03340 SM00267 diguanylate cyclase Y11_RS03345 SM00972 Spore Coat Protein U domain Y11_RS03360 SM00972 Spore Coat Protein U domain Y11_RS03365 SM00972 Spore Coat Protein U domain Y11_RS03370 SM00972 Spore Coat Protein U domain Y11_RS03395 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y11_RS03400 SM00945 ProQ/FINO family Y11_RS03405 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y11_RS03405 SM00245 tail specific protease Y11_RS03425 SM00346 helix_turn_helix isocitrate lyase regulation Y11_RS03430 SM00644 Y11_RS03430 Y11_RS03470 SM00382 ATPases associated with a variety of cellular activities Y11_RS03555 SM00382 ATPases associated with a variety of cellular activities Y11_RS03605 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Y11_RS03630 SM00873 B3/4 domain Y11_RS03630 SM00874 tRNA synthetase B5 domain Y11_RS03630 SM00896 Ferredoxin-fold anticodon binding domain Y11_RS03635 SM00411 bacterial (prokaryotic) histone like domain Y11_RS03660 SM00382 ATPases associated with a variety of cellular activities Y11_RS03780 SM00382 ATPases associated with a variety of cellular activities Y11_RS03850 SM00354 helix_turn _helix lactose operon repressor Y11_RS03915 SM00347 helix_turn_helix multiple antibiotic resistance protein Y11_RS03940 SM00363 S4 RNA-binding domain Y11_RS03990 SM00382 ATPases associated with a variety of cellular activities Y11_RS03995 SM00382 ATPases associated with a variety of cellular activities Y11_RS04035 SM00382 ATPases associated with a variety of cellular activities Y11_RS04070 SM00953 Y11_RS04070 Y11_RS04075 SM00091 PAS domain Y11_RS04075 SM00382 ATPases associated with a variety of cellular activities Y11_RS04085 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Y11_RS04115 SM00890 Domain of unknown function Y11_RS04160 SM00382 ATPases associated with a variety of cellular activities Y11_RS04160 SM00487 DEAD-like helicases superfamily Y11_RS04160 SM00490 helicase superfamily c-terminal domain Y11_RS04160 SM00847 Helicase associated domain (HA2) Add an annotation Y11_RS04170 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS04175 SM00020 Trypsin-like serine protease Y11_RS04190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS04190 SM00387 Histidine kinase-like ATPases Y11_RS04190 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS04195 SM00448 cheY-homologous receiver domain Y11_RS04195 SM00862 Transcriptional regulatory protein, C terminal Y11_RS04220 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Y11_RS04220 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Y11_RS04235 SM00100 Cyclic nucleotide-monophosphate binding domain Y11_RS04235 SM00419 helix_turn_helix, cAMP Regulatory protein Y11_RS04255 SM00871 Bacterial transcription activator, effector binding domain Y11_RS04260 SM00822 Y11_RS04260 Y11_RS04265 SM00098 Alkaline phosphatase homologues Y11_RS04305 SM00644 Y11_RS04305 Y11_RS04350 SM00354 helix_turn _helix lactose operon repressor Y11_RS04400 SM00344 helix_turn_helix ASNC type Y11_RS04410 SM00347 helix_turn_helix multiple antibiotic resistance protein Y11_RS04615 SM00421 helix_turn_helix, Lux Regulon Y11_RS04675 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS04685 SM00382 ATPases associated with a variety of cellular activities Y11_RS04710 SM00382 ATPases associated with a variety of cellular activities Y11_RS04725 SM00382 ATPases associated with a variety of cellular activities Y11_RS04760 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS04770 SM00900 Y11_RS04770 Y11_RS04780 SM00478 endonuclease III Y11_RS04780 SM00525 Y11_RS04780 Y11_RS04810 SM00357 Cold shock protein domain Y11_RS04810 SM00955 Y11_RS04810 Y11_RS04830 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_RS04830 SM01134 Y11_RS04830 Y11_RS04840 SM01007 Class II Aldolase and Adducin N-terminal domain Y11_RS04860 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Y11_RS04875 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS04885 SM00028 Tetratricopeptide repeats Y11_RS04895 SM00014 Acid phosphatase homologues Y11_RS04925 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Y11_RS04925 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Y11_RS04925 SM00493 Y11_RS04925 Y11_RS04940 SM00822 Y11_RS04940 Y11_RS04955 SM00363 S4 RNA-binding domain Y11_RS04965 SM00481 DNA polymerase alpha chain like domain Y11_RS05000 SM00749 bacterial OsmY and nodulation domain Y11_RS05050 SM00052 Putative diguanylate phosphodiesterase Y11_RS05055 SM00155 Phospholipase D. Active site motifs. Y11_RS05065 SM00382 ATPases associated with a variety of cellular activities Y11_RS05070 SM00382 ATPases associated with a variety of cellular activities Y11_RS05115 SM00528 Domain in histone-like proteins of HNS family Y11_RS05120 SM00984 UDP binding domain Y11_RS05175 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Y11_RS05175 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Y11_RS05175 SM00493 Y11_RS05175 Y11_RS05195 SM00870 Y11_RS05195 Y11_RS05225 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y11_RS05240 SM00763 PrkA AAA domain Y11_RS05270 SM00052 Putative diguanylate phosphodiesterase Y11_RS05270 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y11_RS05270 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_RS05270 SM00091 PAS domain Y11_RS05270 SM00267 diguanylate cyclase Y11_RS05280 SM01005 Alanine racemase, C-terminal domain Y11_RS05295 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS05370 SM00341 Helicase and RNase D C-terminal Y11_RS05370 SM00474 3'-5' exonuclease Y11_RS05390 SM00487 DEAD-like helicases superfamily Y11_RS05390 SM00491 Y11_RS05390 Y11_RS05440 SM00257 Lysin motif Y11_RS05450 SM00382 ATPases associated with a variety of cellular activities Y11_RS05465 SM00382 ATPases associated with a variety of cellular activities Y11_RS05470 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y11_RS05535 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_RS05535 SM01134 Y11_RS05535 Y11_RS05575 SM00257 Lysin motif Y11_RS05590 SM00869 Autotransporter beta-domain Y11_RS05615 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS05615 SM00866 Y11_RS05615 Y11_RS05675 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS05690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS05690 SM00387 Histidine kinase-like ATPases Y11_RS05765 SM00481 DNA polymerase alpha chain like domain Y11_RS05790 SM00267 diguanylate cyclase Y11_RS05820 SM00937 Y11_RS05820 Y11_RS05840 SM01400 Y11_RS05840 Y11_RS05925 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS06065 SM00382 ATPases associated with a variety of cellular activities Y11_RS06220 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS06320 SM00465 GIY-YIG type nucleases (URI domain) Y11_RS06325 SM00421 helix_turn_helix, Lux Regulon Y11_RS06325 SM00448 cheY-homologous receiver domain Y11_RS06345 SM00642 Alpha-amylase domain Y11_RS06420 SM00903 Flavin reductase like domain Y11_RS06435 SM00612 Y11_RS06435 Y11_RS06440 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS06505 SM00382 ATPases associated with a variety of cellular activities Y11_RS06515 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS06515 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y11_RS06570 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS06575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_RS06580 SM00478 endonuclease III Y11_RS06635 SM00382 ATPases associated with a variety of cellular activities Y11_RS06695 SM00047 Lysozyme subfamily 2 Y11_RS06740 SM00858 Y11_RS06740 Y11_RS06755 SM00634 Bacterial Ig-like domain (group 1) Y11_RS06790 SM00448 cheY-homologous receiver domain Y11_RS06795 SM00448 cheY-homologous receiver domain Y11_RS06800 SM00138 Methyltransferase, chemotaxis proteins Y11_RS06805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_RS06805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS06805 SM00319 Homologues of the ligand binding domain of Tar Y11_RS06810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_RS06810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS06810 SM00319 Homologues of the ligand binding domain of Tar Y11_RS06815 SM00260 Two component signalling adaptor domain Y11_RS06820 SM00073 Histidine Phosphotransfer domain Y11_RS06820 SM00260 Two component signalling adaptor domain Y11_RS06820 SM00387 Histidine kinase-like ATPases Y11_RS06820 SM01231 Y11_RS06820 Y11_RS06850 SM00829 Enoylreductase Y11_RS06855 SM00831 Cation transporter/ATPase, N-terminus Y11_RS06875 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_RS06875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS06885 SM00357 Cold shock protein domain Y11_RS06890 SM00354 helix_turn _helix lactose operon repressor Y11_RS06895 SM01038 Beta galactosidase small chain Y11_RS06905 SM00829 Enoylreductase Y11_RS06915 SM00344 helix_turn_helix ASNC type Y11_RS07010 SM00382 ATPases associated with a variety of cellular activities Y11_RS07055 SM00953 Y11_RS07055 Y11_RS07065 SM00421 helix_turn_helix, Lux Regulon Y11_RS07065 SM00448 cheY-homologous receiver domain Y11_RS07070 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS07070 SM00387 Histidine kinase-like ATPases Y11_RS07070 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS07070 SM00448 cheY-homologous receiver domain Y11_RS07190 SM00764 Citrate lyase ligase C-terminal domain Y11_RS07195 SM00091 PAS domain Y11_RS07195 SM00387 Histidine kinase-like ATPases Y11_RS07200 SM00448 cheY-homologous receiver domain Y11_RS07205 SM00421 helix_turn_helix, Lux Regulon Y11_RS07205 SM00448 cheY-homologous receiver domain Y11_RS07210 SM00387 Histidine kinase-like ATPases Y11_RS07230 SM00382 ATPases associated with a variety of cellular activities Y11_RS07250 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS07260 SM00260 Two component signalling adaptor domain Y11_RS07260 SM00448 cheY-homologous receiver domain Y11_RS07270 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_RS07270 SM01134 Y11_RS07270 Y11_RS07380 SM00382 ATPases associated with a variety of cellular activities Y11_RS07380 SM01086 C-terminal, D2-small domain, of ClpB protein Y11_RS07425 SM00421 helix_turn_helix, Lux Regulon Y11_RS07445 SM00855 Phosphoglycerate mutase family Y11_RS07465 SM00382 ATPases associated with a variety of cellular activities Y11_RS07545 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS07555 SM00877 Y11_RS07555 Y11_RS07560 SM00877 Y11_RS07560 Y11_RS07590 SM00877 Y11_RS07590 Y11_RS07595 SM00877 Y11_RS07595 Y11_RS07635 SM00877 Y11_RS07635 Y11_RS07640 SM00877 Y11_RS07640 Y11_RS07675 SM00382 ATPases associated with a variety of cellular activities Y11_RS07780 SM01350 Y11_RS07780 Y11_RS07850 SM00382 ATPases associated with a variety of cellular activities Y11_RS07880 SM01091 Transporter associated domain Y11_RS07960 SM00919 Malic enzyme, NAD binding domain Y11_RS07960 SM01274 Y11_RS07960 Y11_RS08040 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS08045 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y11_RS08045 SM00382 ATPases associated with a variety of cellular activities Y11_RS08055 SM00382 ATPases associated with a variety of cellular activities Y11_RS08065 SM00354 helix_turn _helix lactose operon repressor Y11_RS08090 SM00829 Enoylreductase Y11_RS08115 SM00382 ATPases associated with a variety of cellular activities Y11_RS08130 SM00852 Probable molybdopterin binding domain Y11_RS08145 SM00382 ATPases associated with a variety of cellular activities Y11_RS08185 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Y11_RS08215 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS08215 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y11_RS08225 SM00382 ATPases associated with a variety of cellular activities Y11_RS08230 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_RS08230 SM00091 PAS domain Y11_RS08230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_RS08240 SM00903 Flavin reductase like domain Y11_RS08270 SM00487 DEAD-like helicases superfamily Y11_RS08270 SM00488 Y11_RS08270 Y11_RS08270 SM00491 Y11_RS08270 Y11_RS08315 SM00382 ATPases associated with a variety of cellular activities Y11_RS08340 SM00450 Rhodanese Homology Domain Y11_RS08345 SM00382 ATPases associated with a variety of cellular activities Y11_RS08390 SM00382 ATPases associated with a variety of cellular activities Y11_RS08405 SM00507 HNH nucleases Y11_RS08410 SM01118 Y11_RS08410 Y11_RS08430 SM00116 Domain in cystathionine beta-synthase and other proteins. Y11_RS08445 SM00487 DEAD-like helicases superfamily Y11_RS08445 SM00490 helicase superfamily c-terminal domain Y11_RS08460 SM00382 ATPases associated with a variety of cellular activities Y11_RS08495 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_RS08510 SM00487 DEAD-like helicases superfamily Y11_RS08510 SM00490 helicase superfamily c-terminal domain Y11_RS08515 SM00382 ATPases associated with a variety of cellular activities Y11_RS08535 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_RS08535 SM00876 Biotin and Thiamin Synthesis associated domain Y11_RS08555 SM00382 ATPases associated with a variety of cellular activities Y11_RS08580 SM00382 ATPases associated with a variety of cellular activities Y11_RS08620 SM00477 DNA/RNA non-specific endonuclease Y11_RS08620 SM00892 DNA/RNA non-specific endonuclease Y11_RS08625 SM00855 Phosphoglycerate mutase family Y11_RS08715 SM00881 CoA binding domain Y11_RS08730 SM00861 Transketolase, pyrimidine binding domain Y11_RS08780 SM00797 Allophanate hydrolase subunit 2 Y11_RS08850 SM00387 Histidine kinase-like ATPases Y11_RS08850 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS08855 SM00448 cheY-homologous receiver domain Y11_RS08855 SM00862 Transcriptional regulatory protein, C terminal Y11_RS08890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_RS08905 SM01081 Putative carbohydrate binding domain Y11_RS08990 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_RS09005 SM00116 Domain in cystathionine beta-synthase and other proteins. Y11_RS09005 SM01091 Transporter associated domain Y11_RS09020 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS09035 SM00382 ATPases associated with a variety of cellular activities Y11_RS09090 SM00936 Penicillin-binding protein 5, C-terminal domain Y11_RS09105 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_RS09115 SM00267 diguanylate cyclase Y11_RS09125 SM00357 Cold shock protein domain Y11_RS09135 SM00421 helix_turn_helix, Lux Regulon Y11_RS09160 SM00382 ATPases associated with a variety of cellular activities Y11_RS09175 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Y11_RS09225 SM00778 Zinc-binding domain of primase-helicase Y11_RS09225 SM00885 D5 N terminal like Y11_RS09275 SM00840 Y11_RS09275 Y11_RS09290 SM01001 AIR carboxylase Y11_RS09305 SM00382 ATPases associated with a variety of cellular activities Y11_RS09315 SM00822 Y11_RS09315 Y11_RS09325 SM00244 prohibitin homologues Y11_RS09335 SM00422 helix_turn_helix, mercury resistance Y11_RS09435 SM00387 Histidine kinase-like ATPases Y11_RS09440 SM00493 Y11_RS09440 Y11_RS09450 SM00382 ATPases associated with a variety of cellular activities Y11_RS09550 SM00382 ATPases associated with a variety of cellular activities Y11_RS09590 SM00938 Nitrogen regulatory protein P-II Y11_RS09595 SM00382 ATPases associated with a variety of cellular activities Y11_RS09600 SM00382 ATPases associated with a variety of cellular activities Y11_RS09605 SM00344 helix_turn_helix ASNC type Y11_RS09635 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y11_RS09645 SM00411 bacterial (prokaryotic) histone like domain Y11_RS09650 SM00382 ATPases associated with a variety of cellular activities Y11_RS09650 SM00464 Found in ATP-dependent protease La (LON) Y11_RS09655 SM00382 ATPases associated with a variety of cellular activities Y11_RS09655 SM00994 ClpX C4-type zinc finger Y11_RS09655 SM01086 C-terminal, D2-small domain, of ClpB protein Y11_RS09735 SM00981 Y11_RS09735 Y11_RS09750 SM00861 Transketolase, pyrimidine binding domain Y11_RS09815 SM01323 Y11_RS09815 Y11_RS09865 SM00642 Alpha-amylase domain Y11_RS09885 SM00091 PAS domain Y11_RS09885 SM00387 Histidine kinase-like ATPases Y11_RS09885 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS09890 SM00448 cheY-homologous receiver domain Y11_RS09890 SM00862 Transcriptional regulatory protein, C terminal Y11_RS09960 SM01068 Putative carbohydrate binding domain Y11_RS09980 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS09980 SM00866 Y11_RS09980 Y11_RS09990 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Y11_RS10070 SM00900 Y11_RS10070 Y11_RS10110 SM00710 Parallel beta-helix repeats Y11_RS10115 SM00912 haemagglutination activity domain Y11_RS10145 SM01007 Class II Aldolase and Adducin N-terminal domain Y11_RS10170 SM00382 ATPases associated with a variety of cellular activities Y11_RS10185 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS10230 SM00347 helix_turn_helix multiple antibiotic resistance protein Y11_RS10260 SM00967 RNA 2'-O ribose methyltransferase substrate binding Y11_RS10270 SM01144 Y11_RS10270 Y11_RS10275 SM00881 CoA binding domain Y11_RS10280 SM00155 Phospholipase D. Active site motifs. Y11_RS10320 SM00363 S4 RNA-binding domain Y11_RS10330 SM00382 ATPases associated with a variety of cellular activities Y11_RS10330 SM01086 C-terminal, D2-small domain, of ClpB protein Y11_RS10345 SM00830 Chorismate mutase type II Y11_RS10350 SM00830 Chorismate mutase type II Y11_RS10360 SM00448 cheY-homologous receiver domain Y11_RS10360 SM00850 LytTr DNA-binding domain Y11_RS10395 SM00382 ATPases associated with a variety of cellular activities Y11_RS10395 SM00962 SRP54-type protein, GTPase domain Y11_RS10395 SM00963 SRP54-type protein, helical bundle domain Y11_RS10405 SM01091 Transporter associated domain Y11_RS10450 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Y11_RS10460 SM00382 ATPases associated with a variety of cellular activities Y11_RS10495 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS10525 SM00382 ATPases associated with a variety of cellular activities Y11_RS10540 SM01012 Y11_RS10540 Y11_RS10580 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y11_RS10585 SM00838 Elongation factor G C-terminus Y11_RS10585 SM00889 Elongation factor G, domain IV Y11_RS10595 SM01235 Y11_RS10595 Y11_RS10610 SM00822 Y11_RS10610 Y11_RS10625 SM00825 Beta-ketoacyl synthase Y11_RS10635 SM00382 ATPases associated with a variety of cellular activities Y11_RS10645 SM00382 ATPases associated with a variety of cellular activities Y11_RS10715 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Y11_RS10715 SM00534 ATPase domain of DNA mismatch repair MUTS family Y11_RS10725 SM00257 Lysin motif Y11_RS10900 SM00194 Protein tyrosine phosphatase, catalytic domain Y11_RS10900 SM00404 Protein tyrosine phosphatase, catalytic domain motif Y11_RS10915 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y11_RS10920 SM00861 Transketolase, pyrimidine binding domain Y11_RS10955 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y11_RS10960 SM00731 SprT homologues. Y11_RS10985 SM00732 Likely ribonuclease with RNase H fold. Y11_RS11020 SM01152 Y11_RS11020 Y11_RS11030 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_RS11055 SM00478 endonuclease III Y11_RS11055 SM00525 Y11_RS11055 Y11_RS11180 SM00382 ATPases associated with a variety of cellular activities Y11_RS11215 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS11230 SM00354 helix_turn _helix lactose operon repressor Y11_RS11275 SM00052 Putative diguanylate phosphodiesterase Y11_RS11275 SM00091 PAS domain Y11_RS11275 SM00267 diguanylate cyclase Y11_RS11410 SM00862 Transcriptional regulatory protein, C terminal Y11_RS11485 SM00858 Y11_RS11485 Y11_RS11525 SM00382 ATPases associated with a variety of cellular activities Y11_RS11550 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS11665 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS11680 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_RS11690 SM00563 Phosphate acyltransferases Y11_RS11695 SM00434 DNA Topoisomerase IV Y11_RS11715 SM00387 Histidine kinase-like ATPases Y11_RS11715 SM00433 TopoisomeraseII Y11_RS11785 SM01118 Y11_RS11785 Y11_RS11790 SM00287 Bacterial SH3 domain homologues Y11_RS11795 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_RS11805 SM00905 Dihydroneopterin aldolase Y11_RS11810 SM01207 Y11_RS11810 Y11_RS11825 SM00400 zinc finger Y11_RS11825 SM00493 Y11_RS11825 Y11_RS11825 SM00766 DNA primase DnaG DnaB-binding Y11_RS11920 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS12125 SM00869 Autotransporter beta-domain Y11_RS12135 SM00869 Autotransporter beta-domain Y11_RS12170 SM00858 Y11_RS12170 Y11_RS12190 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS12190 SM00895 Y11_RS12190 Y11_RS12290 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS12305 SM00382 ATPases associated with a variety of cellular activities Y11_RS12340 SM00749 bacterial OsmY and nodulation domain Y11_RS12360 SM00073 Histidine Phosphotransfer domain Y11_RS12360 SM00091 PAS domain Y11_RS12360 SM00387 Histidine kinase-like ATPases Y11_RS12360 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS12360 SM00448 cheY-homologous receiver domain Y11_RS12365 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_RS12420 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y11_RS12425 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y11_RS12460 SM00382 ATPases associated with a variety of cellular activities Y11_RS12490 SM00382 ATPases associated with a variety of cellular activities Y11_RS12545 SM00460 Transglutaminase/protease-like homologues Y11_RS12555 SM00642 Alpha-amylase domain Y11_RS12565 SM00354 helix_turn _helix lactose operon repressor Y11_RS12570 SM00831 Cation transporter/ATPase, N-terminus Y11_RS12580 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS12770 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_RS12795 SM00052 Putative diguanylate phosphodiesterase Y11_RS12795 SM00267 diguanylate cyclase Y11_RS12800 SM00829 Enoylreductase Y11_RS12825 SM00878 Biotin carboxylase C-terminal domain Y11_RS12855 SM00267 diguanylate cyclase Y11_RS12865 SM00357 Cold shock protein domain Y11_RS12870 SM00357 Cold shock protein domain Y11_RS12895 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS12910 SM00382 ATPases associated with a variety of cellular activities Y11_RS12945 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS12975 SM01005 Alanine racemase, C-terminal domain Y11_RS12980 SM00382 ATPases associated with a variety of cellular activities Y11_RS12985 SM00829 Enoylreductase Y11_RS13030 SM00563 Phosphate acyltransferases Y11_RS13060 SM00382 ATPases associated with a variety of cellular activities Y11_RS13105 SM00912 haemagglutination activity domain Y11_RS13110 SM01018 B12 binding domain Y11_RS13115 SM00346 helix_turn_helix isocitrate lyase regulation Y11_RS13225 SM00382 ATPases associated with a variety of cellular activities Y11_RS13265 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y11_RS13305 SM00487 DEAD-like helicases superfamily Y11_RS13305 SM00490 helicase superfamily c-terminal domain Y11_RS13310 SM00354 helix_turn _helix lactose operon repressor Y11_RS13325 SM00382 ATPases associated with a variety of cellular activities Y11_RS13325 SM01086 C-terminal, D2-small domain, of ClpB protein Y11_RS13475 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS13495 SM00382 ATPases associated with a variety of cellular activities Y11_RS13545 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS13560 SM00448 cheY-homologous receiver domain Y11_RS13560 SM00862 Transcriptional regulatory protein, C terminal Y11_RS13565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS13565 SM00387 Histidine kinase-like ATPases Y11_RS13565 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS13570 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS13580 SM00971 Serine acetyltransferase, N-terminal Y11_RS13600 SM00450 Rhodanese Homology Domain Y11_RS13630 SM00829 Enoylreductase Y11_RS13670 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Y11_RS13670 SM01232 Y11_RS13670 Y11_RS13725 SM00849 Metallo-beta-lactamase superfamily Y11_RS13730 SM00052 Putative diguanylate phosphodiesterase Y11_RS13730 SM00091 PAS domain Y11_RS13730 SM00267 diguanylate cyclase Y11_RS13755 SM00532 Ligase N family Y11_RS13760 SM00072 Guanylate kinase homologues. Y11_RS13765 SM01409 Y11_RS13765 Y11_RS13770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_RS13770 SM00954 Region found in RelA / SpoT proteins Y11_RS13780 SM00487 DEAD-like helicases superfamily Y11_RS13780 SM00490 helicase superfamily c-terminal domain Y11_RS13805 SM00421 helix_turn_helix, Lux Regulon Y11_RS13810 SM00421 helix_turn_helix, Lux Regulon Y11_RS13815 SM00421 helix_turn_helix, Lux Regulon Y11_RS13850 SM01230 Y11_RS13850 Y11_RS13855 SM00091 PAS domain Y11_RS13855 SM00387 Histidine kinase-like ATPases Y11_RS13855 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS13860 SM00382 ATPases associated with a variety of cellular activities Y11_RS13860 SM00448 cheY-homologous receiver domain Y11_RS13865 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_RS13880 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Y11_RS13880 SM00474 3'-5' exonuclease Y11_RS13880 SM00475 5'-3' exonuclease Y11_RS13880 SM00482 DNA polymerase A domain Y11_RS13940 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS13940 SM00895 Y11_RS13940 Y11_RS13950 SM00354 helix_turn _helix lactose operon repressor Y11_RS13970 SM00382 ATPases associated with a variety of cellular activities Y11_RS13985 SM00382 ATPases associated with a variety of cellular activities Y11_RS13990 SM00327 von Willebrand factor (vWF) type A domain Y11_RS14005 SM00344 helix_turn_helix ASNC type Y11_RS14015 SM01228 Y11_RS14015 Y11_RS14060 SM00382 ATPases associated with a variety of cellular activities Y11_RS14095 SM00382 ATPases associated with a variety of cellular activities Y11_RS14110 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS14140 SM00421 helix_turn_helix, Lux Regulon Y11_RS14140 SM00448 cheY-homologous receiver domain Y11_RS14145 SM00387 Histidine kinase-like ATPases Y11_RS14145 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS14155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_RS14155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS14165 SM00382 ATPases associated with a variety of cellular activities Y11_RS14165 SM00930 Y11_RS14165 Y11_RS14200 SM00382 ATPases associated with a variety of cellular activities Y11_RS14200 SM00760 Bacterial dnaA protein helix-turn-helix domain Y11_RS14205 SM00480 DNA polymerase III beta subunit Y11_RS14215 SM00387 Histidine kinase-like ATPases Y11_RS14215 SM00433 TopoisomeraseII Y11_RS14280 SM00642 Alpha-amylase domain Y11_RS14360 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS14370 SM00966 SpoVT / AbrB like domain Y11_RS14385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_RS14385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS14385 SM01358 Y11_RS14385 Y11_RS14400 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y11_RS14445 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS14475 SM00382 ATPases associated with a variety of cellular activities Y11_RS14515 SM00382 ATPases associated with a variety of cellular activities Y11_RS14590 SM00354 helix_turn _helix lactose operon repressor Y11_RS14620 SM00912 haemagglutination activity domain Y11_RS14635 SM00912 haemagglutination activity domain Y11_RS14655 SM00387 Histidine kinase-like ATPases Y11_RS14660 SM00421 helix_turn_helix, Lux Regulon Y11_RS14660 SM00448 cheY-homologous receiver domain Y11_RS14695 SM00382 ATPases associated with a variety of cellular activities Y11_RS14700 SM00382 ATPases associated with a variety of cellular activities Y11_RS14755 SM00052 Putative diguanylate phosphodiesterase Y11_RS14795 SM00052 Putative diguanylate phosphodiesterase Y11_RS14815 SM00869 Autotransporter beta-domain Y11_RS14845 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y11_RS14995 SM00354 helix_turn _helix lactose operon repressor Y11_RS15015 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y11_RS15040 SM00642 Alpha-amylase domain Y11_RS15045 SM00642 Alpha-amylase domain Y11_RS15075 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_RS15075 SM01134 Y11_RS15075 Y11_RS15085 SM00450 Rhodanese Homology Domain Y11_RS15095 SM00421 helix_turn_helix, Lux Regulon Y11_RS15145 SM00899 Y11_RS15145 Y11_RS15150 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_RS15150 SM00732 Likely ribonuclease with RNase H fold. Y11_RS15180 SM00448 cheY-homologous receiver domain Y11_RS15180 SM00862 Transcriptional regulatory protein, C terminal Y11_RS15185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS15185 SM00387 Histidine kinase-like ATPases Y11_RS15185 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS15200 SM00363 S4 RNA-binding domain Y11_RS15315 SM00354 helix_turn _helix lactose operon repressor Y11_RS15330 SM00382 ATPases associated with a variety of cellular activities Y11_RS15350 SM00100 Cyclic nucleotide-monophosphate binding domain Y11_RS15350 SM00419 helix_turn_helix, cAMP Regulatory protein Y11_RS15385 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS15390 SM00382 ATPases associated with a variety of cellular activities Y11_RS15415 SM00382 ATPases associated with a variety of cellular activities Y11_RS15480 SM00838 Elongation factor G C-terminus Y11_RS15480 SM00889 Elongation factor G, domain IV Y11_RS15500 SM01403 Y11_RS15500 Y11_RS15520 SM01382 Y11_RS15520 Y11_RS15520 SM01383 Y11_RS15520 Y11_RS15535 SM00322 K homology RNA-binding domain Y11_RS15555 SM01374 Y11_RS15555 Y11_RS15560 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Y11_RS15625 SM00363 S4 RNA-binding domain Y11_RS15625 SM01390 Y11_RS15625 Y11_RS15630 SM00662 RNA polymerases D Y11_RS15645 SM00422 helix_turn_helix, mercury resistance Y11_RS15755 SM00382 ATPases associated with a variety of cellular activities Y11_RS15780 SM00382 ATPases associated with a variety of cellular activities Y11_RS15885 SM00060 Fibronectin type 3 domain Y11_RS15895 SM00487 DEAD-like helicases superfamily Y11_RS15895 SM00490 helicase superfamily c-terminal domain Y11_RS15905 SM00357 Cold shock protein domain Y11_RS15905 SM00382 ATPases associated with a variety of cellular activities Y11_RS15905 SM00959 Rho termination factor, N-terminal domain Y11_RS15925 SM00984 UDP binding domain Y11_RS16030 SM01219 Y11_RS16030 Y11_RS16100 SM00341 Helicase and RNase D C-terminal Y11_RS16100 SM00487 DEAD-like helicases superfamily Y11_RS16100 SM00490 helicase superfamily c-terminal domain Y11_RS16100 SM00956 Y11_RS16100 Y11_RS16200 SM00382 ATPases associated with a variety of cellular activities Y11_RS16200 SM00962 SRP54-type protein, GTPase domain Y11_RS16200 SM00963 SRP54-type protein, helical bundle domain Y11_RS16205 SM00382 ATPases associated with a variety of cellular activities Y11_RS16250 SM00382 ATPases associated with a variety of cellular activities Y11_RS16255 SM00382 ATPases associated with a variety of cellular activities Y11_RS16305 SM00382 ATPases associated with a variety of cellular activities Y11_RS16405 SM01004 Delta-aminolevulinic acid dehydratase Y11_RS16410 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Y11_RS16535 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Y11_RS16535 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Y11_RS16540 SM00649 Ribosomal protein L11/L12 Y11_RS16565 SM00663 RNA polymerase I subunit A N-terminus Y11_RS16575 SM00876 Biotin and Thiamin Synthesis associated domain Y11_RS16630 SM00411 bacterial (prokaryotic) histone like domain Y11_RS16640 SM01209 Y11_RS16640 Y11_RS16640 SM01210 Y11_RS16640 Y11_RS16645 SM00798 AICARFT/IMPCHase bienzyme Y11_RS16645 SM00851 MGS-like domain Y11_RS16705 SM00421 helix_turn_helix, Lux Regulon Y11_RS16705 SM00448 cheY-homologous receiver domain Y11_RS16710 SM00387 Histidine kinase-like ATPases Y11_RS16710 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS16710 SM00448 cheY-homologous receiver domain Y11_RS16775 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS16820 SM00382 ATPases associated with a variety of cellular activities Y11_RS16890 SM00965 Secretin and TonB N terminus short domain Y11_RS16895 SM00382 ATPases associated with a variety of cellular activities Y11_RS16925 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS16930 SM00382 ATPases associated with a variety of cellular activities Y11_RS16970 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_RS17040 SM00883 Chaperonin 10 Kd subunit Y11_RS17065 SM00841 Elongation factor P, C-terminal Y11_RS17065 SM01185 Y11_RS17065 Y11_RS17125 SM00479 Y11_RS17125 Y11_RS17155 SM00257 Lysin motif Y11_RS17155 SM00646 Y11_RS17155 Y11_RS17160 SM00853 MutL C terminal dimerisation domain Y11_RS17160 SM01340 Y11_RS17160 Y11_RS17180 SM00244 prohibitin homologues Y11_RS17185 SM00244 prohibitin homologues Y11_RS17195 SM00788 Adenylosuccinate synthetase Y11_RS17205 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_RS17205 SM00357 Cold shock protein domain Y11_RS17205 SM00955 Y11_RS17205 Y11_RS17210 SM00967 RNA 2'-O ribose methyltransferase substrate binding Y11_RS17300 SM01091 Transporter associated domain Y11_RS17330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_RS17330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS17395 SM00387 Histidine kinase-like ATPases Y11_RS17395 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS17400 SM00448 cheY-homologous receiver domain Y11_RS17400 SM00862 Transcriptional regulatory protein, C terminal Y11_RS17415 SM01103 Y11_RS17415 Y11_RS17425 SM00382 ATPases associated with a variety of cellular activities Y11_RS17460 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_RS17460 SM00322 K homology RNA-binding domain Y11_RS17465 SM00173 Ras subfamily of RAS small GTPases Y11_RS17480 SM01387 Y11_RS17480 Y11_RS17485 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_RS17485 SM00322 K homology RNA-binding domain Y11_RS17490 SM00028 Tetratricopeptide repeats Y11_RS17495 SM00487 DEAD-like helicases superfamily Y11_RS17495 SM00490 helicase superfamily c-terminal domain Y11_RS17585 SM00382 ATPases associated with a variety of cellular activities Y11_RS17610 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y11_RS17630 SM00382 ATPases associated with a variety of cellular activities Y11_RS17635 SM00382 ATPases associated with a variety of cellular activities Y11_RS17660 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS17660 SM00866 Y11_RS17660 Y11_RS17690 SM00382 ATPases associated with a variety of cellular activities Y11_RS17695 SM00382 ATPases associated with a variety of cellular activities Y11_RS17785 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS17795 SM00382 ATPases associated with a variety of cellular activities Y11_RS17815 SM00421 helix_turn_helix, Lux Regulon Y11_RS17860 SM01133 Y11_RS17860 Y11_RS17880 SM00382 ATPases associated with a variety of cellular activities Y11_RS17935 SM01120 Y11_RS17935 Y11_RS17980 SM00091 PAS domain Y11_RS17985 SM00354 helix_turn _helix lactose operon repressor Y11_RS17990 SM00640 Glycosyl hydrolases family 32 Y11_RS18020 SM00267 diguanylate cyclase Y11_RS18070 SM00749 bacterial OsmY and nodulation domain Y11_RS18090 SM01133 Y11_RS18090 Y11_RS18095 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Y11_RS18120 SM00382 ATPases associated with a variety of cellular activities Y11_RS18135 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS18140 SM00829 Enoylreductase Y11_RS18155 SM00382 ATPases associated with a variety of cellular activities Y11_RS18165 SM00267 diguanylate cyclase Y11_RS18175 SM00831 Cation transporter/ATPase, N-terminus Y11_RS18195 SM00855 Phosphoglycerate mutase family Y11_RS18200 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS18200 SM00871 Bacterial transcription activator, effector binding domain Y11_RS18210 SM00448 cheY-homologous receiver domain Y11_RS18210 SM00862 Transcriptional regulatory protein, C terminal Y11_RS18250 SM00852 Probable molybdopterin binding domain Y11_RS18260 SM00247 Beta/gamma crystallins Y11_RS18275 SM00271 DnaJ molecular chaperone homology domain Y11_RS18300 SM00904 Riboflavin kinase Y11_RS18330 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Y11_RS18335 SM00851 MGS-like domain Y11_RS18335 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Y11_RS18370 SM00650 Ribosomal RNA adenine dimethylases Y11_RS18390 SM00271 DnaJ molecular chaperone homology domain Y11_RS18400 SM00634 Bacterial Ig-like domain (group 1) Y11_RS18405 SM00487 DEAD-like helicases superfamily Y11_RS18405 SM00490 helicase superfamily c-terminal domain Y11_RS18410 SM00486 DNA polymerase type-B family Y11_RS18420 SM00382 ATPases associated with a variety of cellular activities Y11_RS18490 SM01329 Y11_RS18490 Y11_RS18495 SM00917 LeuA allosteric (dimerisation) domain Y11_RS18520 SM00354 helix_turn _helix lactose operon repressor Y11_RS18600 SM00842 Cell division protein FtsA Y11_RS18605 SM00864 Tubulin/FtsZ family, GTPase domain Y11_RS18605 SM00865 Tubulin/FtsZ family, C-terminal domain Y11_RS18625 SM00957 SecA DEAD-like domain Y11_RS18625 SM00958 SecA preprotein cross-linking domain Y11_RS18650 SM01240 Y11_RS18650 Y11_RS18675 SM00644 Y11_RS18675 Y11_RS18690 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS18690 SM00895 Y11_RS18690 Y11_RS18715 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS18770 SM00947 Carbonic anhydrase Y11_RS18775 SM00382 ATPases associated with a variety of cellular activities Y11_RS18835 SM00487 DEAD-like helicases superfamily Y11_RS18835 SM00490 helicase superfamily c-terminal domain Y11_RS18835 SM00847 Helicase associated domain (HA2) Add an annotation Y11_RS18845 SM00382 ATPases associated with a variety of cellular activities Y11_RS18895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_RS18900 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y11_RS18915 SM00954 Region found in RelA / SpoT proteins Y11_RS18930 SM01192 Y11_RS18930 Y11_RS18930 SM01193 Y11_RS18930 Y11_RS18950 SM01011 Aminopeptidase P, N-terminal domain Y11_RS18990 SM00822 Y11_RS18990 Y11_RS19030 SM00448 cheY-homologous receiver domain Y11_RS19030 SM00862 Transcriptional regulatory protein, C terminal Y11_RS19065 SM00937 Y11_RS19065 Y11_RS19085 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS19095 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS19120 SM00091 PAS domain Y11_RS19120 SM00267 diguanylate cyclase Y11_RS19135 SM00271 DnaJ molecular chaperone homology domain Y11_RS19145 SM00822 Y11_RS19145 Y11_RS19155 SM00947 Carbonic anhydrase Y11_RS19180 SM00382 ATPases associated with a variety of cellular activities Y11_RS19235 SM00862 Transcriptional regulatory protein, C terminal Y11_RS19255 SM00849 Metallo-beta-lactamase superfamily Y11_RS19280 SM00354 helix_turn _helix lactose operon repressor Y11_RS19295 SM00563 Phosphate acyltransferases Y11_RS19315 SM00927 DNA mismatch repair enzyme MutH Y11_RS19325 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y11_RS19390 SM00646 Y11_RS19390 Y11_RS19400 SM00925 MltA specific insert domain Y11_RS19450 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Y11_RS19450 SM00475 5'-3' exonuclease Y11_RS19495 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_RS19540 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y11_RS19550 SM00935 Outer membrane protein (OmpH-like) Y11_RS19580 SM00481 DNA polymerase alpha chain like domain Y11_RS19600 SM00977 TilS substrate C-terminal domain Y11_RS19620 SM01322 Y11_RS19620 Y11_RS19660 SM00382 ATPases associated with a variety of cellular activities Y11_RS19660 SM00930 Y11_RS19660 Y11_RS19700 SM00825 Beta-ketoacyl synthase Y11_RS19730 SM00257 Lysin motif Y11_RS19735 SM00849 Metallo-beta-lactamase superfamily Y11_RS19750 SM00479 Y11_RS19750 Y11_RS19770 SM00382 ATPases associated with a variety of cellular activities Y11_RS19800 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_RS19825 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS19850 SM00357 Cold shock protein domain Y11_RS19865 SM00450 Rhodanese Homology Domain Y11_RS19895 SM00382 ATPases associated with a variety of cellular activities Y11_RS19900 SM00382 ATPases associated with a variety of cellular activities Y11_RS19925 SM00988 UreE urease accessory protein, N-terminal domain Y11_RS20015 SM00342 helix_turn_helix, arabinose operon control protein Y11_RS20080 SM00986 Uracil DNA glycosylase superfamily Y11_RS20080 SM00987 UreE urease accessory protein, C-terminal domain Y11_RS20105 SM00248 ankyrin repeats Y11_RS20120 SM00487 DEAD-like helicases superfamily Y11_RS20120 SM00490 helicase superfamily c-terminal domain Y11_RS20170 SM00358 Double-stranded RNA binding motif Y11_RS20170 SM00535 Ribonuclease III family Y11_RS20230 SM00062 Bacterial periplasmic substrate-binding proteins Y11_RS20235 SM01211 Y11_RS20235 Y11_RS20245 SM00387 Histidine kinase-like ATPases Y11_RS20245 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS20255 SM00382 ATPases associated with a variety of cellular activities Y11_RS20255 SM00448 cheY-homologous receiver domain Y11_RS20265 SM00938 Nitrogen regulatory protein P-II Y11_RS20360 SM00271 DnaJ molecular chaperone homology domain Y11_RS20400 SM01359 Y11_RS20400 Y11_RS20400 SM01360 Y11_RS20400 Y11_RS20410 SM00247 Beta/gamma crystallins Y11_RS20415 SM00562 Y11_RS20415 Y11_RS20425 SM00028 Tetratricopeptide repeats Y11_RS20430 SM00530 Helix-turn-helix XRE-family like proteins Y11_RS20450 SM00564 beta-propeller repeat Y11_RS20460 SM00382 ATPases associated with a variety of cellular activities Y11_RS20480 SM00116 Domain in cystathionine beta-synthase and other proteins. Y11_RS20480 SM01240 Y11_RS20480 Y11_RS20535 SM00116 Domain in cystathionine beta-synthase and other proteins. Y11_RS20540 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_RS20540 SM01134 Y11_RS20540 Y11_RS20570 SM00046 Diacylglycerol kinase catalytic domain (presumed) Y11_RS20585 SM00448 cheY-homologous receiver domain Y11_RS20585 SM00862 Transcriptional regulatory protein, C terminal Y11_RS20590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_RS20590 SM00387 Histidine kinase-like ATPases Y11_RS20590 SM00388 His Kinase A (phosphoacceptor) domain Y11_RS20625 SM00052 Putative diguanylate phosphodiesterase Y11_RS20630 SM00382 ATPases associated with a variety of cellular activities Y11_RS20660 SM00924 MgtE intracellular N domain Y11_RS20665 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_RS20665 SM00091 PAS domain Y11_RS20665 SM00267 diguanylate cyclase Y11_RS21150 SM00532 Ligase N family