locus-tag class description CH54_RS00005 PF10672 S-adenosylmethionine-dependent methyltransferase CH54_RS00005 PF02926 THUMP domain CH54_RS00005 PF01170 Putative RNA methylase family UPF0020 CH54_RS00010 PF12848 ABC transporter CH54_RS00010 PF16326 ABC transporter C-terminal domain CH54_RS00010 PF00005 ABC transporter CH54_RS00015 PF04403 Paraquat-inducible protein A CH54_RS00020 PF02470 MlaD protein CH54_RS00025 PF03886 ABC-type transport auxiliary lipoprotein component CH54_RS00030 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_RS00030 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_RS00040 PF07977 FabA-like domain CH54_RS00045 PF05362 Lon protease (S16) C-terminal proteolytic domain CH54_RS00045 PF13654 AAA domain CH54_RS00050 PF17414 MatP C-terminal ribbon-helix-helix domain CH54_RS00050 PF06303 MatP N-terminal domain CH54_RS00055 PF00691 OmpA family CH54_RS00055 PF01389 OmpA-like transmembrane domain CH54_RS00060 PF03846 Cell division inhibitor SulA CH54_RS00065 PF04994 TfoX C-terminal domain CH54_RS00065 PF04993 TfoX N-terminal domain CH54_RS00070 PF12805 FUSC-like inner membrane protein yccS CH54_RS00075 PF03733 Inner membrane component domain CH54_RS00080 PF00580 UvrD/REP helicase N-terminal domain CH54_RS00080 PF12462 DNA helicase IV / RNA helicase N terminal CH54_RS00080 PF13361 UvrD-like helicase C-terminal domain CH54_RS00085 PF02142 MGS-like domain CH54_RS00090 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH54_RS00095 PF13380 CoA binding domain CH54_RS00100 PF08755 Hemimethylated DNA-binding protein YccV like CH54_RS00105 PF17785 PUA-like domain CH54_RS00105 PF10672 S-adenosylmethionine-dependent methyltransferase CH54_RS00115 PF00708 Acylphosphatase CH54_RS00120 PF04358 DsrC like protein CH54_RS00130 PF01867 CRISPR associated protein Cas1 CH54_RS00140 PF09611 CRISPR-associated protein (Cas_Csy1) CH54_RS00145 PF09614 CRISPR-associated protein (Cas_Csy2) CH54_RS00150 PF09615 CRISPR-associated protein (Cas_Csy3) CH54_RS00155 PF09618 CRISPR-associated protein (Cas_Csy4) CH54_RS00160 PF02335 Cytochrome c552 CH54_RS00165 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CH54_RS00165 PF13435 Cytochrome c554 and c-prime CH54_RS00170 PF13247 4Fe-4S dicluster domain CH54_RS00170 PF00037 4Fe-4S binding domain CH54_RS00175 PF03916 Polysulphide reductase, NrfD CH54_RS00180 PF01578 Cytochrome C assembly protein CH54_RS00180 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH54_RS00185 PF08534 Redoxin CH54_RS00190 PF03918 Cytochrome C biogenesis protein CH54_RS00210 PF00999 Sodium/hydrogen exchanger family CH54_RS00210 PF02080 TrkA-C domain CH54_RS00210 PF03471 Transporter associated domain CH54_RS00220 PF01757 Acyltransferase family CH54_RS00225 PF04349 Periplasmic glucan biosynthesis protein, MdoG CH54_RS00230 PF00535 Glycosyl transferase family 2 CH54_RS00235 PF07119 Protein of unknown function (DUF1375) CH54_RS00250 PF00854 POT family CH54_RS00255 PF07690 Major Facilitator Superfamily CH54_RS00260 PF07681 DoxX CH54_RS00265 PF03279 Bacterial lipid A biosynthesis acyltransferase CH54_RS00275 PF17773 UPF0176 acylphosphatase like domain CH54_RS00275 PF00581 Rhodanese-like domain CH54_RS00275 PF12368 Rhodanase C-terminal CH54_RS00280 PF01594 AI-2E family transporter CH54_RS00285 PF00196 Bacterial regulatory proteins, luxR family CH54_RS00290 PF01266 FAD dependent oxidoreductase CH54_RS00295 PF13991 BssS protein family CH54_RS00300 PF06183 DinI-like family CH54_RS00305 PF01979 Amidohydrolase family CH54_RS00315 PF03992 Antibiotic biosynthesis monooxygenase CH54_RS00320 PF00575 S1 RNA binding domain CH54_RS00320 PF00575 S1 RNA binding domain CH54_RS00320 PF12111 Polyribonucleotide phosphorylase C terminal CH54_RS00320 PF10150 Ribonuclease E/G family CH54_RS00320 PF12111 Polyribonucleotide phosphorylase C terminal CH54_RS00320 PF10150 Ribonuclease E/G family CH54_RS00325 PF01479 S4 domain CH54_RS00325 PF00849 RNA pseudouridylate synthase CH54_RS00330 PF02545 Maf-like protein CH54_RS00335 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH54_RS00340 PF01783 Ribosomal L32p protein family CH54_RS00345 PF02504 Fatty acid synthesis protein CH54_RS00350 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH54_RS00350 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH54_RS00355 PF00698 Acyl transferase domain CH54_RS00365 PF00550 Phosphopantetheine attachment site CH54_RS00370 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_RS00370 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_RS00375 PF01063 Amino-transferase class IV CH54_RS00380 PF02618 YceG-like family CH54_RS00385 PF02223 Thymidylate kinase CH54_RS00390 PF09115 DNA polymerase III, delta subunit, C terminal CH54_RS00395 PF01026 TatD related DNase CH54_RS00400 PF02378 Phosphotransferase system, EIIC CH54_RS00400 PF00367 phosphotransferase system, EIIB CH54_RS00410 PF00664 ABC transporter transmembrane region CH54_RS00410 PF00005 ABC transporter CH54_RS00410 PF03412 Peptidase C39 family CH54_RS00420 PF13186 Iron-sulfur cluster-binding domain CH54_RS00420 PF04055 Radical SAM superfamily CH54_RS00425 PF12793 Sugar transport-related sRNA regulator N-term CH54_RS00425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_RS00430 PF08501 Shikimate dehydrogenase substrate binding domain CH54_RS00435 PF01230 HIT domain CH54_RS00440 PF07233 Protein of unknown function (DUF1425) CH54_RS00445 PF13036 Peptidoglycan-synthase activator LpoB CH54_RS00445 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH54_RS00450 PF01636 Phosphotransferase enzyme family CH54_RS00455 PF00933 Glycosyl hydrolase family 3 N terminal domain CH54_RS00460 PF05728 Uncharacterised protein family (UPF0227) CH54_RS00465 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_RS00470 PF05433 Glycine zipper 2TM domain CH54_RS00475 PF00271 Helicase conserved C-terminal domain CH54_RS00475 PF02559 CarD-like/TRCF domain CH54_RS00475 PF03461 TRCF domain CH54_RS00475 PF17757 UvrB interaction domain CH54_RS00475 PF00270 DEAD/DEAH box helicase CH54_RS00480 PF02687 FtsX-like permease family CH54_RS00480 PF12704 MacB-like periplasmic core domain CH54_RS00485 PF00005 ABC transporter CH54_RS00490 PF02687 FtsX-like permease family CH54_RS00490 PF12704 MacB-like periplasmic core domain CH54_RS00495 PF00480 ROK family CH54_RS00500 PF02146 Sir2 family CH54_RS00505 PF01546 Peptidase family M20/M25/M40 CH54_RS00505 PF07687 Peptidase dimerisation domain CH54_RS00510 PF08007 Cupin superfamily protein CH54_RS00515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS00515 PF08918 PhoQ Sensor CH54_RS00520 PF00072 Response regulator receiver domain CH54_RS00520 PF00486 Transcriptional regulatory protein, C terminal CH54_RS00530 PF08328 Adenylosuccinate lyase C-terminal CH54_RS00530 PF00206 Lyase CH54_RS00535 PF04356 Protein of unknown function (DUF489) CH54_RS00545 PF00293 NUDIX domain CH54_RS00550 PF00849 RNA pseudouridylate synthase CH54_RS00555 PF00180 Isocitrate/isopropylmalate dehydrogenase CH54_RS00570 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH54_RS00570 PF00356 Bacterial regulatory proteins, lacI family CH54_RS00580 PF08447 PAS fold CH54_RS00580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_RS00585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_RS00585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH54_RS00590 PF01965 DJ-1/PfpI family CH54_RS00590 PF12833 Helix-turn-helix domain CH54_RS00595 PF01053 Cys/Met metabolism PLP-dependent enzyme CH54_RS00600 PF05368 NmrA-like family CH54_RS00605 PF01638 HxlR-like helix-turn-helix CH54_RS00620 PF07007 Lysozyme inhibitor LprI CH54_RS00625 PF06411 HdeA/HdeB family CH54_RS00630 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS00630 PF00360 Phytochrome region CH54_RS00630 PF01590 GAF domain CH54_RS00630 PF00563 EAL domain CH54_RS00640 PF00005 ABC transporter CH54_RS00640 PF00664 ABC transporter transmembrane region CH54_RS00650 PF13520 Amino acid permease CH54_RS00665 PF12833 Helix-turn-helix domain CH54_RS00675 PF10964 Protein of unknown function (DUF2766) CH54_RS00680 PF13996 YobH-like protein CH54_RS00685 PF13974 YebO-like protein CH54_RS00700 PF00324 Amino acid permease CH54_RS00705 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH54_RS00710 PF10736 Protein of unknown function (DUF2627) CH54_RS00715 PF00313 'Cold-shock' DNA-binding domain CH54_RS00720 PF02578 Multi-copper polyphenol oxidoreductase laccase CH54_RS00725 PF03717 Penicillin-binding Protein dimerisation domain CH54_RS00725 PF00905 Penicillin binding protein transpeptidase domain CH54_RS00730 PF13847 Methyltransferase domain CH54_RS00740 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS00740 PF13426 PAS domain CH54_RS00740 PF00563 EAL domain CH54_RS00740 PF08448 PAS fold CH54_RS00740 PF08447 PAS fold CH54_RS00740 PF05231 MASE1 CH54_RS00745 PF07715 TonB-dependent Receptor Plug Domain CH54_RS00745 PF00593 TonB dependent receptor CH54_RS00750 PF02659 Putative manganese efflux pump CH54_RS00755 PF06173 Protein of unknown function (DUF986) CH54_RS00760 PF03613 PTS system mannose/fructose/sorbose family IID component CH54_RS00765 PF03609 PTS system sorbose-specific iic component CH54_RS00770 PF03830 PTS system sorbose subfamily IIB component CH54_RS00770 PF03610 PTS system fructose IIA component CH54_RS00775 PF03741 Integral membrane protein TerC family CH54_RS00775 PF03471 Transporter associated domain CH54_RS00780 PF03313 Serine dehydratase alpha chain CH54_RS00780 PF03315 Serine dehydratase beta chain CH54_RS00785 PF00293 NUDIX domain CH54_RS00790 PF04715 Anthranilate synthase component I, N terminal region CH54_RS00790 PF00425 chorismate binding enzyme CH54_RS00795 PF03701 Uncharacterised protein family (UPF0181) CH54_RS00800 PF02222 ATP-grasp domain CH54_RS00805 PF00270 DEAD/DEAH box helicase CH54_RS00805 PF00271 Helicase conserved C-terminal domain CH54_RS00805 PF03880 DbpA RNA binding domain CH54_RS00810 PF07130 YebG protein CH54_RS00815 PF04266 ASCH domain CH54_RS00820 PF13995 YebF-like protein CH54_RS00825 PF00326 Prolyl oligopeptidase family CH54_RS00825 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH54_RS00830 PF00929 Exonuclease CH54_RS00835 PF00561 alpha/beta hydrolase fold CH54_RS00840 PF06440 DNA polymerase III, theta subunit CH54_RS00845 PF00210 Ferritin-like domain CH54_RS00850 PF04234 CopC domain CH54_RS00855 PF05425 Copper resistance protein D CH54_RS00860 PF10709 Protein of unknown function (DUF2511) CH54_RS00870 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CH54_RS00875 PF04221 RelB antitoxin CH54_RS00880 PF00144 Beta-lactamase CH54_RS00885 PF01479 S4 domain CH54_RS00885 PF00849 RNA pseudouridylate synthase CH54_RS00890 PF03616 Sodium/glutamate symporter CH54_RS00895 PF00665 Integrase core domain CH54_RS00900 PF01527 Transposase CH54_RS00920 PF00924 Mechanosensitive ion channel CH54_RS00940 PF07351 Protein of unknown function (DUF1480) CH54_RS00945 PF00563 EAL domain CH54_RS00945 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS00945 PF00360 Phytochrome region CH54_RS00945 PF01590 GAF domain CH54_RS00980 PF07690 Major Facilitator Superfamily CH54_RS00985 PF03466 LysR substrate binding domain CH54_RS00985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS00990 PF02470 MlaD protein CH54_RS00995 PF04403 Paraquat-inducible protein A CH54_RS01000 PF13185 GAF domain CH54_RS01005 PF17516 ProQ C-terminal domain CH54_RS01005 PF04352 ProQ/FINO family CH54_RS01010 PF17804 Tail specific protease N-terminal domain CH54_RS01010 PF03572 Peptidase family S41 CH54_RS01010 PF00595 PDZ domain CH54_RS01010 PF11818 C-terminal domain of tail specific protease (DUF3340) CH54_RS01015 PF01435 Peptidase family M48 CH54_RS01025 PF07690 Major Facilitator Superfamily CH54_RS01030 PF14583 Oligogalacturonate lyase CH54_RS01035 PF01614 Bacterial transcriptional regulator CH54_RS01035 PF09339 IclR helix-turn-helix domain CH54_RS01040 PF01510 N-acetylmuramoyl-L-alanine amidase CH54_RS01045 PF00375 Sodium:dicarboxylate symporter family CH54_RS01050 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH54_RS01055 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH54_RS01060 PF01547 Bacterial extracellular solute-binding protein CH54_RS01065 PF03459 TOBE domain CH54_RS01065 PF17912 MalK OB fold domain CH54_RS01065 PF00005 ABC transporter CH54_RS01070 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS01075 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS01080 PF06917 Periplasmic pectate lyase CH54_RS01090 PF04962 KduI/IolB family CH54_RS01095 PF07883 Cupin domain CH54_RS01100 PF13419 Haloacid dehalogenase-like hydrolase CH54_RS01105 PF14002 YniB-like protein CH54_RS01110 PF03881 Fructosamine kinase CH54_RS01115 PF00950 ABC 3 transport family CH54_RS01120 PF00950 ABC 3 transport family CH54_RS01125 PF00005 ABC transporter CH54_RS01130 PF01297 Zinc-uptake complex component A periplasmic CH54_RS01135 PF01464 Transglycosylase SLT domain CH54_RS01140 PF01914 MarC family integral membrane protein CH54_RS01165 PF04474 Protein of unknown function (DUF554) CH54_RS01170 PF13619 KTSC domain CH54_RS01175 PF00872 Transposase, Mutator family CH54_RS01180 PF03797 Autotransporter beta-domain CH54_RS01190 PF03129 Anticodon binding domain CH54_RS01190 PF02824 TGS domain CH54_RS01190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH54_RS01190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH54_RS01195 PF05198 Translation initiation factor IF-3, N-terminal domain CH54_RS01195 PF00707 Translation initiation factor IF-3, C-terminal domain CH54_RS01200 PF01632 Ribosomal protein L35 CH54_RS01205 PF00453 Ribosomal protein L20 CH54_RS01210 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH54_RS01210 PF01409 tRNA synthetases class II core domain (F) CH54_RS01215 PF01588 Putative tRNA binding domain CH54_RS01215 PF03147 Ferredoxin-fold anticodon binding domain CH54_RS01215 PF03484 tRNA synthetase B5 domain CH54_RS01215 PF03483 B3/4 domain CH54_RS01215 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH54_RS01220 PF00216 Bacterial DNA-binding protein CH54_RS01225 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH54_RS01235 PF01032 FecCD transport family CH54_RS01240 PF00255 Glutathione peroxidase CH54_RS01245 PF00005 ABC transporter CH54_RS01250 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH54_RS01255 PF00535 Glycosyl transferase family 2 CH54_RS01260 PF00551 Formyl transferase CH54_RS01260 PF01370 NAD dependent epimerase/dehydratase family CH54_RS01260 PF02911 Formyl transferase, C-terminal domain CH54_RS01265 PF01522 Polysaccharide deacetylase CH54_RS01270 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH54_RS01275 PF00892 EamA-like transporter family CH54_RS01285 PF00877 NlpC/P60 family CH54_RS01290 PF10437 Bacterial lipoate protein ligase C-terminus CH54_RS01290 PF03099 Biotin/lipoate A/B protein ligase family CH54_RS01295 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH54_RS01300 PF01497 Periplasmic binding protein CH54_RS01305 PF05171 Haemin-degrading HemS.ChuX domain CH54_RS01310 PF00593 TonB dependent receptor CH54_RS01310 PF07715 TonB-dependent Receptor Plug Domain CH54_RS01315 PF10636 Hemin uptake protein hemP CH54_RS01320 PF00793 DAHP synthetase I family CH54_RS01325 PF03618 Kinase/pyrophosphorylase CH54_RS01330 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH54_RS01330 PF02896 PEP-utilising enzyme, TIM barrel domain CH54_RS01330 PF00391 PEP-utilising enzyme, mobile domain CH54_RS01335 PF01594 AI-2E family transporter CH54_RS01340 PF02913 FAD linked oxidases, C-terminal domain CH54_RS01340 PF01565 FAD binding domain CH54_RS01340 PF13183 4Fe-4S dicluster domain CH54_RS01345 PF03061 Thioesterase superfamily CH54_RS01350 PF01521 Iron-sulphur cluster biosynthesis CH54_RS01355 PF01458 Uncharacterized protein family (UPF0051) CH54_RS01360 PF00005 ABC transporter CH54_RS01365 PF01458 Uncharacterized protein family (UPF0051) CH54_RS01370 PF00266 Aminotransferase class-V CH54_RS01375 PF02657 Fe-S metabolism associated domain CH54_RS01380 PF03734 L,D-transpeptidase catalytic domain CH54_RS01380 PF17969 L,D-transpeptidase C-terminal domain CH54_RS01380 PF01476 LysM domain CH54_RS01385 PF04728 Lipoprotein leucine-zipper CH54_RS01390 PF00224 Pyruvate kinase, barrel domain CH54_RS01390 PF02887 Pyruvate kinase, alpha/beta domain CH54_RS01410 PF01554 MatE CH54_RS01415 PF00677 Lumazine binding domain CH54_RS01425 PF07690 Major Facilitator Superfamily CH54_RS01430 PF03466 LysR substrate binding domain CH54_RS01430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS01435 PF00356 Bacterial regulatory proteins, lacI family CH54_RS01440 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH54_RS01440 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH54_RS01445 PF00877 NlpC/P60 family CH54_RS01450 PF00462 Glutaredoxin CH54_RS01455 PF00929 Exonuclease CH54_RS01460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH54_RS01465 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH54_RS01470 PF00440 Bacterial regulatory proteins, tetR family CH54_RS01470 PF16925 Tetracyclin repressor-like, C-terminal domain CH54_RS01475 PF08019 Phosphoethanolamine transferase EptA/EptB CH54_RS01475 PF00884 Sulfatase CH54_RS01480 PF06945 Protein of unknown function (DUF1289) CH54_RS01485 PF00248 Aldo/keto reductase family CH54_RS01490 PF04632 Fusaric acid resistance protein family CH54_RS01495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_RS01495 PF00529 HlyD membrane-fusion protein of T1SS CH54_RS01500 PF07869 Protein of unknown function (DUF1656) CH54_RS01505 PF01047 MarR family CH54_RS01510 PF05433 Glycine zipper 2TM domain CH54_RS01515 PF03702 Anhydro-N-acetylmuramic acid kinase CH54_RS01520 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH54_RS01525 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH54_RS01525 PF01243 Pyridoxamine 5'-phosphate oxidase CH54_RS01530 PF01479 S4 domain CH54_RS01530 PF00579 tRNA synthetases class I (W and Y) CH54_RS01535 PF08543 Phosphomethylpyrimidine kinase CH54_RS01540 PF00043 Glutathione S-transferase, C-terminal domain CH54_RS01540 PF02798 Glutathione S-transferase, N-terminal domain CH54_RS01545 PF11656 YjbD family (DUF3811) CH54_RS01550 PF04893 Yip1 domain CH54_RS01560 PF00854 POT family CH54_RS01565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS01565 PF03466 LysR substrate binding domain CH54_RS01580 PF00005 ABC transporter CH54_RS01585 PF00005 ABC transporter CH54_RS01585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_RS01590 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_RS01590 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS01595 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS01600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_RS01605 PF02917 Pertussis toxin, subunit 1 CH54_RS01615 PF02954 Bacterial regulatory protein, Fis family CH54_RS01615 PF00158 Sigma-54 interaction domain CH54_RS01620 PF04012 PspA/IM30 family CH54_RS01625 PF06667 Phage shock protein B CH54_RS01630 PF04024 PspC domain CH54_RS01640 PF04317 YcjX-like family, DUF463 CH54_RS01645 PF05128 Domain of unknown function (DUF697) CH54_RS01650 PF08808 RES domain CH54_RS01655 PF09722 Protein of unknown function (DUF2384) CH54_RS01660 PF18024 Helix-turn-helix domain CH54_RS01660 PF00158 Sigma-54 interaction domain CH54_RS01665 PF08534 Redoxin CH54_RS01670 PF13378 Enolase C-terminal domain-like CH54_RS01670 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH54_RS01675 PF00246 Zinc carboxypeptidase CH54_RS01680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_RS01695 PF01544 CorA-like Mg2+ transporter protein CH54_RS01700 PF01171 PP-loop family CH54_RS01705 PF00388 Phosphatidylinositol-specific phospholipase C, X domain CH54_RS01710 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH54_RS01710 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_RS01710 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH54_RS01710 PF10371 Domain of unknown function CH54_RS01710 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH54_RS01715 PF00893 Small Multidrug Resistance protein CH54_RS01720 PF02308 MgtC family CH54_RS01725 PF03891 Domain of unknown function (DUF333) CH54_RS01730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH54_RS01730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_RS01735 PF11739 Dicarboxylate transport CH54_RS01740 PF13617 YnbE-like lipoprotein CH54_RS01745 PF07027 Protein of unknown function (DUF1318) CH54_RS01750 PF02525 Flavodoxin-like fold CH54_RS01755 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH54_RS01755 PF00271 Helicase conserved C-terminal domain CH54_RS01755 PF04408 Helicase associated domain (HA2) CH54_RS01755 PF00270 DEAD/DEAH box helicase CH54_RS01755 PF11898 Domain of unknown function (DUF3418) CH54_RS01770 PF00089 Trypsin CH54_RS01785 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH54_RS01790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS01790 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS01790 PF00672 HAMP domain CH54_RS01795 PF00486 Transcriptional regulatory protein, C terminal CH54_RS01795 PF00072 Response regulator receiver domain CH54_RS01805 PF13520 Amino acid permease CH54_RS01810 PF07338 Protein of unknown function (DUF1471) CH54_RS01820 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH54_RS01820 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH54_RS01820 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH54_RS01825 PF02233 NAD(P) transhydrogenase beta subunit CH54_RS01830 PF00582 Universal stress protein family CH54_RS01835 PF00027 Cyclic nucleotide-binding domain CH54_RS01835 PF13545 Crp-like helix-turn-helix domain CH54_RS01840 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH54_RS01840 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH54_RS01855 PF06445 GyrI-like small molecule binding domain CH54_RS01860 PF03466 LysR substrate binding domain CH54_RS01860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS01870 PF00245 Alkaline phosphatase CH54_RS01880 PF13419 Haloacid dehalogenase-like hydrolase CH54_RS01885 PF01842 ACT domain CH54_RS01890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_RS01890 PF00205 Thiamine pyrophosphate enzyme, central domain CH54_RS01890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_RS01900 PF01510 N-acetylmuramoyl-L-alanine amidase CH54_RS01920 PF01048 Phosphorylase superfamily CH54_RS01920 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH54_RS01930 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS01935 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS01940 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS01945 PF01037 Lrp/AsnC ligand binding domain CH54_RS01955 PF18113 Rubredoxin binding C-terminal domain CH54_RS01955 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_RS01960 PF00258 Flavodoxin CH54_RS01960 PF00753 Metallo-beta-lactamase superfamily CH54_RS01960 PF00301 Rubredoxin CH54_RS01965 PF01590 GAF domain CH54_RS01965 PF00158 Sigma-54 interaction domain CH54_RS01970 PF02798 Glutathione S-transferase, N-terminal domain CH54_RS01975 PF07690 Major Facilitator Superfamily CH54_RS01985 PF14535 AMP-binding enzyme C-terminal domain CH54_RS01985 PF00501 AMP-binding enzyme CH54_RS02020 PF01022 Bacterial regulatory protein, arsR family CH54_RS02025 PF02040 Arsenical pump membrane protein CH54_RS02030 PF03960 ArsC family CH54_RS02035 PF13610 DDE domain CH54_RS02040 PF00155 Aminotransferase class I and II CH54_RS02045 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH54_RS02055 PF13610 DDE domain CH54_RS02060 PF13610 DDE domain CH54_RS02065 PF00106 short chain dehydrogenase CH54_RS02070 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CH54_RS02075 PF06932 Protein of unknown function (DUF1283) CH54_RS02080 PF06649 Protein of unknown function (DUF1161) CH54_RS02085 PF00654 Voltage gated chloride channel CH54_RS02095 PF00480 ROK family CH54_RS02100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS02100 PF03466 LysR substrate binding domain CH54_RS02105 PF07690 Major Facilitator Superfamily CH54_RS02115 PF05472 DNA replication terminus site-binding protein (Ter protein) CH54_RS02120 PF00196 Bacterial regulatory proteins, luxR family CH54_RS02125 PF00206 Lyase CH54_RS02125 PF10415 Fumarase C C-terminus CH54_RS02130 PF01238 Phosphomannose isomerase type I CH54_RS02135 PF06097 Bacterial protein of unknown function (DUF945) CH54_RS02150 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH54_RS02150 PF00356 Bacterial regulatory proteins, lacI family CH54_RS02160 PF00367 phosphotransferase system, EIIB CH54_RS02160 PF02378 Phosphotransferase system, EIIC CH54_RS02165 PF00155 Aminotransferase class I and II CH54_RS02170 PF00962 Adenosine/AMP deaminase CH54_RS02175 PF13593 SBF-like CPA transporter family (DUF4137) CH54_RS02180 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH54_RS02180 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH54_RS02185 PF12833 Helix-turn-helix domain CH54_RS02185 PF02311 AraC-like ligand binding domain CH54_RS02205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH54_RS02210 PF11762 L-arabinose isomerase C-terminal domain CH54_RS02210 PF02610 L-arabinose isomerase CH54_RS02215 PF02463 RecF/RecN/SMC N terminal domain CH54_RS02220 PF00664 ABC transporter transmembrane region CH54_RS02220 PF03412 Peptidase C39 family CH54_RS02220 PF00005 ABC transporter CH54_RS02230 PF00664 ABC transporter transmembrane region CH54_RS02230 PF03412 Peptidase C39 family CH54_RS02230 PF00005 ABC transporter CH54_RS02235 PF01268 Formate--tetrahydrofolate ligase CH54_RS02240 PF10754 Protein of unknown function (DUF2569) CH54_RS02245 PF02508 Rnf-Nqr subunit, membrane protein CH54_RS02250 PF04060 Putative Fe-S cluster CH54_RS02255 PF13375 RnfC Barrel sandwich hybrid domain CH54_RS02255 PF10531 SLBB domain CH54_RS02255 PF13237 4Fe-4S dicluster domain CH54_RS02255 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH54_RS02260 PF12833 Helix-turn-helix domain CH54_RS02260 PF06445 GyrI-like small molecule binding domain CH54_RS02265 PF03116 NQR2, RnfD, RnfE family CH54_RS02270 PF04205 FMN-binding domain CH54_RS02275 PF02508 Rnf-Nqr subunit, membrane protein CH54_RS02280 PF00730 HhH-GPD superfamily base excision DNA repair protein CH54_RS02280 PF00633 Helix-hairpin-helix motif CH54_RS02280 PF10576 Iron-sulfur binding domain of endonuclease III CH54_RS02300 PF00384 Molybdopterin oxidoreductase CH54_RS02305 PF08206 Ribonuclease B OB domain CH54_RS02305 PF00575 S1 RNA binding domain CH54_RS02305 PF00773 RNB domain CH54_RS02310 PF02554 Carbon starvation protein CstA CH54_RS02310 PF13722 5TM C-terminal transporter carbon starvation CstA CH54_RS02315 PF04328 Selenoprotein, putative CH54_RS02320 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH54_RS02325 PF00455 DeoR C terminal sensor domain CH54_RS02325 PF08220 DeoR-like helix-turn-helix domain CH54_RS02335 PF00596 Class II Aldolase and Adducin N-terminal domain CH54_RS02340 PF05433 Glycine zipper 2TM domain CH54_RS02345 PF01253 Translation initiation factor SUI1 CH54_RS02350 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH54_RS02355 PF07338 Protein of unknown function (DUF1471) CH54_RS02365 PF18073 Rubredoxin metal binding domain CH54_RS02370 PF06305 Lipopolysaccharide assembly protein A domain CH54_RS02375 PF01569 PAP2 superfamily CH54_RS02380 PF00925 GTP cyclohydrolase II CH54_RS02385 PF00330 Aconitase family (aconitate hydratase) CH54_RS02385 PF00694 Aconitase C-terminal domain CH54_RS02400 PF03466 LysR substrate binding domain CH54_RS02400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS02405 PF01751 Toprim domain CH54_RS02405 PF01131 DNA topoisomerase CH54_RS02405 PF01396 Topoisomerase DNA binding C4 zinc finger CH54_RS02405 PF08272 Topoisomerase I zinc-ribbon-like CH54_RS02410 PF10692 Protein of unknown function (DUF2498) CH54_RS02415 PF01343 Peptidase family S49 CH54_RS02415 PF08496 Peptidase family S49 N-terminal CH54_RS02420 PF00106 short chain dehydrogenase CH54_RS02425 PF12557 Cob(I)alamin adenosyltransferase N terminal CH54_RS02425 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH54_RS02435 PF00849 RNA pseudouridylate synthase CH54_RS02435 PF01479 S4 domain CH54_RS02455 PF01527 Transposase CH54_RS02460 PF00665 Integrase core domain CH54_RS02470 PF00239 Resolvase, N terminal domain CH54_RS02470 PF02796 Helix-turn-helix domain of resolvase CH54_RS02490 PF00196 Bacterial regulatory proteins, luxR family CH54_RS02510 PF02369 Bacterial Ig-like domain (group 1) CH54_RS02510 PF11924 Inverse autotransporter, beta-domain CH54_RS02510 PF07979 Intimin C-type lectin domain CH54_RS02510 PF09134 Invasin, domain 3 CH54_RS02520 PF00196 Bacterial regulatory proteins, luxR family CH54_RS02520 PF00072 Response regulator receiver domain CH54_RS02525 PF03797 Autotransporter beta-domain CH54_RS02530 PF01300 Telomere recombination CH54_RS02535 PF02811 PHP domain CH54_RS02540 PF04715 Anthranilate synthase component I, N terminal region CH54_RS02540 PF00425 chorismate binding enzyme CH54_RS02545 PF00117 Glutamine amidotransferase class-I CH54_RS02550 PF02885 Glycosyl transferase family, helical bundle domain CH54_RS02550 PF00591 Glycosyl transferase family, a/b domain CH54_RS02555 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH54_RS02555 PF00218 Indole-3-glycerol phosphate synthase CH54_RS02560 PF00291 Pyridoxal-phosphate dependent enzyme CH54_RS02565 PF00290 Tryptophan synthase alpha chain CH54_RS02575 PF03922 OmpW family CH54_RS02590 PF04279 Intracellular septation protein A CH54_RS02595 PF03061 Thioesterase superfamily CH54_RS02600 PF03544 Gram-negative bacterial TonB protein C-terminal CH54_RS02605 PF03795 YCII-related domain CH54_RS02620 PF00563 EAL domain CH54_RS02625 PF13091 PLD-like domain CH54_RS02625 PF13396 Phospholipase_D-nuclease N-terminal CH54_RS02630 PF04269 Protein of unknown function, DUF440 CH54_RS02635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_RS02635 PF00005 ABC transporter CH54_RS02640 PF00005 ABC transporter CH54_RS02640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_RS02645 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_RS02645 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS02650 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS02655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_RS02660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_RS02665 PF01914 MarC family integral membrane protein CH54_RS02670 PF00465 Iron-containing alcohol dehydrogenase CH54_RS02670 PF00171 Aldehyde dehydrogenase family CH54_RS02675 PF00665 Integrase core domain CH54_RS02680 PF01527 Transposase CH54_RS02685 PF00265 Thymidine kinase CH54_RS02695 PF00816 H-NS histone family CH54_RS02700 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH54_RS02700 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH54_RS02700 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH54_RS02705 PF00072 Response regulator receiver domain CH54_RS02710 PF01734 Patatin-like phospholipase CH54_RS02720 PF02810 SEC-C motif CH54_RS02725 PF00551 Formyl transferase CH54_RS02725 PF01842 ACT domain CH54_RS02740 PF03466 LysR substrate binding domain CH54_RS02740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS02745 PF03372 Endonuclease/Exonuclease/phosphatase family CH54_RS02750 PF00293 NUDIX domain CH54_RS02755 PF07383 Protein of unknown function (DUF1496) CH54_RS02760 PF01751 Toprim domain CH54_RS02760 PF01131 DNA topoisomerase CH54_RS02765 PF00586 AIR synthase related protein, N-terminal domain CH54_RS02765 PF02769 AIR synthase related protein, C-terminal domain CH54_RS02770 PF00881 Nitroreductase family CH54_RS02775 PF01343 Peptidase family S49 CH54_RS02780 PF00710 Asparaginase, N-terminal CH54_RS02780 PF17763 Glutaminase/Asparaginase C-terminal domain CH54_RS02785 PF00857 Isochorismatase family CH54_RS02790 PF07023 Protein of unknown function (DUF1315) CH54_RS02795 PF01641 SelR domain CH54_RS02800 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH54_RS02800 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_RS02805 PF01263 Aldose 1-epimerase CH54_RS02810 PF06629 MltA-interacting protein MipA CH54_RS02815 PF06798 PrkA serine protein kinase C-terminal domain CH54_RS02815 PF08298 PrkA AAA domain CH54_RS02820 PF04285 Protein of unknown function (DUF444) CH54_RS02830 PF03466 LysR substrate binding domain CH54_RS02830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS02835 PF05726 Pirin C-terminal cupin domain CH54_RS02835 PF02678 Pirin CH54_RS02840 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS02840 PF00563 EAL domain CH54_RS02840 PF13426 PAS domain CH54_RS02845 PF07690 Major Facilitator Superfamily CH54_RS02850 PF00842 Alanine racemase, C-terminal domain CH54_RS02850 PF01168 Alanine racemase, N-terminal domain CH54_RS02855 PF01266 FAD dependent oxidoreductase CH54_RS02860 PF04293 SpoVR like protein CH54_RS02865 PF07840 FadR C-terminal domain CH54_RS02865 PF00392 Bacterial regulatory proteins, gntR family CH54_RS02870 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH54_RS02875 PF02600 Disulfide bond formation protein DsbB CH54_RS02880 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_RS02880 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH54_RS02890 PF03692 Putative zinc- or iron-chelating domain CH54_RS02895 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH54_RS02900 PF13406 Transglycosylase SLT domain CH54_RS02905 PF05166 YcgL domain CH54_RS02915 PF05209 Septum formation inhibitor MinC, N-terminal domain CH54_RS02915 PF03775 Septum formation inhibitor MinC, C-terminal domain CH54_RS02920 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH54_RS02925 PF03776 Septum formation topological specificity factor MinE CH54_RS02930 PF01612 3'-5' exonuclease CH54_RS02930 PF00570 HRDC domain CH54_RS02935 PF00501 AMP-binding enzyme CH54_RS02935 PF13193 AMP-binding enzyme C-terminal domain CH54_RS02940 PF03843 Outer membrane lipoprotein Slp family CH54_RS02945 PF00814 Glycoprotease family CH54_RS02950 PF04851 Type III restriction enzyme, res subunit CH54_RS02950 PF13307 Helicase C-terminal domain CH54_RS02955 PF01042 Endoribonuclease L-PSP CH54_RS02960 PF00893 Small Multidrug Resistance protein CH54_RS02965 PF00893 Small Multidrug Resistance protein CH54_RS02970 PF01081 KDPG and KHG aldolase CH54_RS02975 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH54_RS02975 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH54_RS02980 PF01418 Helix-turn-helix domain, rpiR family CH54_RS02980 PF01380 SIS domain CH54_RS02985 PF00224 Pyruvate kinase, barrel domain CH54_RS02985 PF02887 Pyruvate kinase, alpha/beta domain CH54_RS02990 PF03279 Bacterial lipid A biosynthesis acyltransferase CH54_RS02995 PF01476 LysM domain CH54_RS02995 PF08525 Opacity-associated protein A N-terminal motif CH54_RS02995 PF01551 Peptidase family M23 CH54_RS03000 PF01297 Zinc-uptake complex component A periplasmic CH54_RS03005 PF00005 ABC transporter CH54_RS03010 PF00950 ABC 3 transport family CH54_RS03015 PF00854 POT family CH54_RS03020 PF17864 RuvB AAA lid domain CH54_RS03020 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH54_RS03020 PF05491 RuvB C-terminal winged helix domain CH54_RS03025 PF07499 RuvA, C-terminal domain CH54_RS03025 PF01330 RuvA N terminal domain CH54_RS03030 PF02075 Crossover junction endodeoxyribonuclease RuvC CH54_RS03035 PF01709 Transcriptional regulator CH54_RS03040 PF00293 NUDIX domain CH54_RS03045 PF02938 GAD domain CH54_RS03045 PF00152 tRNA synthetases class II (D, K and N) CH54_RS03045 PF01336 OB-fold nucleic acid binding domain CH54_RS03050 PF00857 Isochorismatase family CH54_RS03055 PF01904 Protein of unknown function DUF72 CH54_RS03060 PF01124 MAPEG family CH54_RS03065 PF13649 Methyltransferase domain CH54_RS03070 PF08003 Protein of unknown function (DUF1698) CH54_RS03075 PF03932 CutC family CH54_RS03080 PF06185 YecM protein CH54_RS03085 PF00750 tRNA synthetases class I (R) CH54_RS03085 PF03485 Arginyl tRNA synthetase N terminal domain CH54_RS03085 PF05746 DALR anticodon binding domain CH54_RS03090 PF03023 Lipid II flippase MurJ CH54_RS03095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH54_RS03100 PF04337 Protein of unknown function, DUF480 CH54_RS03105 PF13302 Acetyltransferase (GNAT) domain CH54_RS03110 PF07690 Major Facilitator Superfamily CH54_RS03115 PF07273 Protein of unknown function (DUF1439) CH54_RS03120 PF02613 Nitrate reductase delta subunit CH54_RS03125 PF02811 PHP domain CH54_RS03130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_RS03145 PF03009 Glycerophosphoryl diester phosphodiesterase family CH54_RS03155 PF00916 Sulfate permease family CH54_RS03155 PF01740 STAS domain CH54_RS03160 PF00793 DAHP synthetase I family CH54_RS03165 PF13369 Transglutaminase-like superfamily CH54_RS03170 PF04247 Invasion gene expression up-regulator, SirB CH54_RS03175 PF13847 Methyltransferase domain CH54_RS03175 PF17827 PrmC N-terminal domain CH54_RS03180 PF03462 PCRF domain CH54_RS03180 PF00472 RF-1 domain CH54_RS03185 PF01488 Shikimate / quinate 5-dehydrogenase CH54_RS03185 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH54_RS03185 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH54_RS03190 PF03550 Outer membrane lipoprotein LolB CH54_RS03195 PF08544 GHMP kinases C terminal CH54_RS03195 PF00288 GHMP kinases N terminal domain CH54_RS03200 PF14572 Phosphoribosyl synthetase-associated domain CH54_RS03200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH54_RS03205 PF10762 Protein of unknown function (DUF2583) CH54_RS03210 PF01195 Peptidyl-tRNA hydrolase CH54_RS03220 PF01926 50S ribosome-binding GTPase CH54_RS03220 PF06071 Protein of unknown function (DUF933) CH54_RS03230 PF01551 Peptidase family M23 CH54_RS03230 PF01476 LysM domain CH54_RS03240 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CH54_RS03245 PF02653 Branched-chain amino acid transport system / permease component CH54_RS03250 PF00005 ABC transporter CH54_RS03255 PF13407 Periplasmic binding protein domain CH54_RS03260 PF05962 HutD CH54_RS03265 PF01979 Amidohydrolase family CH54_RS03270 PF07702 UTRA domain CH54_RS03270 PF00392 Bacterial regulatory proteins, gntR family CH54_RS03275 PF01979 Amidohydrolase family CH54_RS03285 PF00267 Gram-negative porin CH54_RS03290 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH54_RS03295 PF04996 Succinylarginine dihydrolase CH54_RS03300 PF00171 Aldehyde dehydrogenase family CH54_RS03305 PF04958 Arginine N-succinyltransferase beta subunit CH54_RS03310 PF00202 Aminotransferase class-III CH54_RS03315 PF00155 Aminotransferase class I and II CH54_RS03315 PF00392 Bacterial regulatory proteins, gntR family CH54_RS03320 PF01654 Cytochrome bd terminal oxidase subunit I CH54_RS03325 PF02322 Cytochrome bd terminal oxidase subunit II CH54_RS03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS03330 PF00672 HAMP domain CH54_RS03330 PF07730 Histidine kinase CH54_RS03330 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH54_RS03335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS03335 PF03466 LysR substrate binding domain CH54_RS03345 PF01699 Sodium/calcium exchanger protein CH54_RS03350 PF02562 PhoH-like protein CH54_RS03365 PF13994 PgaD-like protein CH54_RS03370 PF00535 Glycosyl transferase family 2 CH54_RS03375 PF01522 Polysaccharide deacetylase CH54_RS03375 PF14883 Hypothetical glycosyl hydrolase family 13 CH54_RS03385 PF05195 Aminopeptidase P, N-terminal domain CH54_RS03385 PF00557 Metallopeptidase family M24 CH54_RS03390 PF11575 FhuF 2Fe-2S C-terminal domain CH54_RS03390 PF06276 Ferric iron reductase FhuF-like transporter CH54_RS03395 PF01411 tRNA synthetases class II (A) CH54_RS03395 PF02272 DHHA1 domain CH54_RS03395 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH54_RS03400 PF03466 LysR substrate binding domain CH54_RS03400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS03405 PF03848 Tellurite resistance protein TehB CH54_RS03405 PF09313 Domain of unknown function (DUF1971) CH54_RS03415 PF00578 AhpC/TSA family CH54_RS03420 PF00005 ABC transporter CH54_RS03420 PF02687 FtsX-like permease family CH54_RS03420 PF12704 MacB-like periplasmic core domain CH54_RS03430 PF02687 FtsX-like permease family CH54_RS03430 PF00005 ABC transporter CH54_RS03430 PF12704 MacB-like periplasmic core domain CH54_RS03440 PF10634 Fe2+ transport protein CH54_RS03445 PF03239 Iron permease FTR1 family CH54_RS03455 PF01804 Penicillin amidase CH54_RS03465 PF04960 Glutaminase CH54_RS03470 PF01261 Xylose isomerase-like TIM barrel CH54_RS03475 PF00596 Class II Aldolase and Adducin N-terminal domain CH54_RS03480 PF17042 Nucleotide-binding C-terminal domain CH54_RS03480 PF07005 Sugar-binding N-terminal domain CH54_RS03485 PF00455 DeoR C terminal sensor domain CH54_RS03485 PF08220 DeoR-like helix-turn-helix domain CH54_RS03490 PF00989 PAS fold CH54_RS03490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS03490 PF17203 Single cache domain 3 CH54_RS03490 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH54_RS03495 PF00072 Response regulator receiver domain CH54_RS03500 PF03390 2-hydroxycarboxylate transporter family CH54_RS03505 PF00324 Amino acid permease CH54_RS03540 PF01066 CDP-alcohol phosphatidyltransferase CH54_RS03545 PF01541 GIY-YIG catalytic domain CH54_RS03545 PF02151 UvrB/uvrC motif CH54_RS03545 PF08459 UvrC Helix-hairpin-helix N-terminal CH54_RS03550 PF00072 Response regulator receiver domain CH54_RS03550 PF00196 Bacterial regulatory proteins, luxR family CH54_RS03555 PF10769 Protein of unknown function (DUF2594) CH54_RS03570 PF00128 Alpha amylase, catalytic domain CH54_RS03570 PF02806 Alpha amylase, C-terminal all-beta domain CH54_RS03590 PF04138 GtrA-like protein CH54_RS03595 PF00535 Glycosyl transferase family 2 CH54_RS03620 PF00324 Amino acid permease CH54_RS03625 PF01344 Kelch motif CH54_RS03635 PF13693 Winged helix-turn-helix DNA-binding CH54_RS03645 PF00083 Sugar (and other) transporter CH54_RS03650 PF03358 NADPH-dependent FMN reductase CH54_RS03655 PF04261 Dyp-type peroxidase family CH54_RS03660 PF13473 Cupredoxin-like domain CH54_RS03660 PF09375 Imelysin CH54_RS03665 PF03239 Iron permease FTR1 family CH54_RS03675 PF00474 Sodium:solute symporter family CH54_RS03680 PF01619 Proline dehydrogenase CH54_RS03680 PF14850 DNA-binding domain of Proline dehydrogenase CH54_RS03680 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH54_RS03680 PF00171 Aldehyde dehydrogenase family CH54_RS03695 PF00005 ABC transporter CH54_RS03700 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS03705 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS03710 PF00291 Pyridoxal-phosphate dependent enzyme CH54_RS03715 PF02899 Phage integrase, N-terminal SAM-like domain CH54_RS03720 PF04545 Sigma-70, region 4 CH54_RS03720 PF04539 Sigma-70 region 3 CH54_RS03720 PF04542 Sigma-70 region 2 CH54_RS03725 PF00700 Bacterial flagellin C-terminal helical region CH54_RS03725 PF00669 Bacterial flagellin N-terminal helical region CH54_RS03730 PF07196 Flagellin hook IN motif CH54_RS03730 PF07195 Flagellar hook-associated protein 2 C-terminus CH54_RS03730 PF02465 Flagellar hook-associated protein 2 N-terminus CH54_RS03735 PF02561 Flagellar protein FliS CH54_RS03740 PF05400 Flagellar protein FliT CH54_RS03745 PF12833 Helix-turn-helix domain CH54_RS03750 PF01966 HD domain CH54_RS03755 PF00730 HhH-GPD superfamily base excision DNA repair protein CH54_RS03765 PF02049 Flagellar hook-basal body complex protein FliE CH54_RS03770 PF01514 Secretory protein of YscJ/FliF family CH54_RS03770 PF08345 Flagellar M-ring protein C-terminal CH54_RS03775 PF14841 FliG middle domain CH54_RS03775 PF14842 FliG N-terminal domain CH54_RS03775 PF01706 FliG C-terminal domain CH54_RS03780 PF02108 Flagellar assembly protein FliH CH54_RS03785 PF18269 T3SS EscN ATPase C-terminal domain CH54_RS03785 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_RS03790 PF02050 Flagellar FliJ protein CH54_RS03795 PF02120 Flagellar hook-length control protein FliK CH54_RS03800 PF03748 Flagellar basal body-associated protein FliL CH54_RS03805 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH54_RS03805 PF02154 Flagellar motor switch protein FliM CH54_RS03810 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH54_RS03810 PF16973 Flagellar motor switch protein FliN N-terminal CH54_RS03815 PF04347 Flagellar biosynthesis protein, FliO CH54_RS03820 PF00813 FliP family CH54_RS03825 PF01313 Bacterial export proteins, family 3 CH54_RS03830 PF01311 Bacterial export proteins, family 1 CH54_RS03835 PF00669 Bacterial flagellin N-terminal helical region CH54_RS03840 PF00460 Flagella basal body rod protein CH54_RS03840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_RS03845 PF10135 Rod binding protein CH54_RS03845 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH54_RS03850 PF02119 Flagellar P-ring protein CH54_RS03855 PF02107 Flagellar L-ring protein CH54_RS03860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_RS03860 PF00460 Flagella basal body rod protein CH54_RS03865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_RS03865 PF00460 Flagella basal body rod protein CH54_RS03870 PF07559 Flagellar basal body protein FlaE CH54_RS03870 PF00460 Flagella basal body rod protein CH54_RS03870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_RS03875 PF13860 FlgD Ig-like domain CH54_RS03875 PF13861 FlgD Tudor-like domain CH54_RS03875 PF03963 Flagellar hook capping protein - N-terminal region CH54_RS03880 PF00460 Flagella basal body rod protein CH54_RS03880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_RS03885 PF00460 Flagella basal body rod protein CH54_RS03890 PF17656 FlgA N-terminal domain CH54_RS03890 PF13144 Chaperone for flagella basal body P-ring formation CH54_RS03895 PF04316 Anti-sigma-28 factor, FlgM CH54_RS03900 PF05130 FlgN protein CH54_RS03905 PF06366 Flagellar protein FlhE CH54_RS03910 PF00771 FHIPEP family CH54_RS03915 PF01312 FlhB HrpN YscU SpaS Family CH54_RS03920 PF01483 Proprotein convertase P-domain CH54_RS03920 PF00082 Subtilase family CH54_RS03925 PF04344 Chemotaxis phosphatase, CheZ CH54_RS03930 PF00072 Response regulator receiver domain CH54_RS03935 PF01339 CheB methylesterase CH54_RS03935 PF00072 Response regulator receiver domain CH54_RS03940 PF03705 CheR methyltransferase, all-alpha domain CH54_RS03940 PF01739 CheR methyltransferase, SAM binding domain CH54_RS03945 PF00672 HAMP domain CH54_RS03945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_RS03945 PF02203 Tar ligand binding domain homologue CH54_RS03950 PF00672 HAMP domain CH54_RS03950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_RS03950 PF02203 Tar ligand binding domain homologue CH54_RS03955 PF01584 CheW-like domain CH54_RS03960 PF02895 Signal transducing histidine kinase, homodimeric domain CH54_RS03960 PF01627 Hpt domain CH54_RS03960 PF09078 CheY binding CH54_RS03960 PF01584 CheW-like domain CH54_RS03960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS03965 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH54_RS03965 PF00691 OmpA family CH54_RS03970 PF01618 MotA/TolQ/ExbB proton channel family CH54_RS03975 PF05280 Flagellar transcriptional activator (FlhC) CH54_RS03980 PF05247 Flagellar transcriptional activator (FlhD) CH54_RS03985 PF00582 Universal stress protein family CH54_RS03990 PF00689 Cation transporting ATPase, C-terminus CH54_RS03990 PF00690 Cation transporter/ATPase, N-terminus CH54_RS03995 PF02308 MgtC family CH54_RS04000 PF02203 Tar ligand binding domain homologue CH54_RS04000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_RS04000 PF00672 HAMP domain CH54_RS04005 PF10781 Dextransucrase DSRB CH54_RS04010 PF00313 'Cold-shock' DNA-binding domain CH54_RS04015 PF00356 Bacterial regulatory proteins, lacI family CH54_RS04020 PF02929 Beta galactosidase small chain CH54_RS04020 PF00703 Glycosyl hydrolases family 2 CH54_RS04020 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH54_RS04020 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH54_RS04020 PF16353 Domain of unknown function(DUF4981) CH54_RS04025 PF16197 Ketoacyl-synthetase C-terminal extension CH54_RS04025 PF00107 Zinc-binding dehydrogenase CH54_RS04025 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_RS04025 PF00550 Phosphopantetheine attachment site CH54_RS04025 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_RS04025 PF08659 KR domain CH54_RS04025 PF08240 Alcohol dehydrogenase GroES-like domain CH54_RS04025 PF14765 Polyketide synthase dehydratase CH54_RS04025 PF00698 Acyl transferase domain CH54_RS04050 PF14001 YdfZ protein CH54_RS04055 PF00328 Histidine phosphatase superfamily (branch 2) CH54_RS04060 PF00483 Nucleotidyl transferase CH54_RS04070 PF00782 Dual specificity phosphatase, catalytic domain CH54_RS04075 PF12147 Putative methyltransferase CH54_RS04075 PF12146 Serine aminopeptidase, S33 CH54_RS04090 PF01066 CDP-alcohol phosphatidyltransferase CH54_RS04095 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_RS04100 PF00577 Outer membrane usher protein CH54_RS04100 PF13954 PapC N-terminal domain CH54_RS04100 PF13953 PapC C-terminal domain CH54_RS04115 PF01548 Transposase CH54_RS04115 PF02371 Transposase IS116/IS110/IS902 family CH54_RS04120 PF06167 Glucose-regulated metallo-peptidase M90 CH54_RS04130 PF00849 RNA pseudouridylate synthase CH54_RS04150 PF01648 4'-phosphopantetheinyl transferase superfamily CH54_RS04150 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH54_RS04155 PF03480 Bacterial extracellular solute-binding protein, family 7 CH54_RS04165 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH54_RS04170 PF00939 Sodium:sulfate symporter transmembrane region CH54_RS04175 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH54_RS04180 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH54_RS04180 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CH54_RS04185 PF04223 Citrate lyase, alpha subunit (CitF) CH54_RS04190 PF03328 HpcH/HpaI aldolase/citrate lyase family CH54_RS04195 PF06857 Malonate decarboxylase delta subunit (MdcD) CH54_RS04200 PF08218 Citrate lyase ligase C-terminal domain CH54_RS04205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS04205 PF17203 Single cache domain 3 CH54_RS04205 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH54_RS04205 PF00989 PAS fold CH54_RS04210 PF12431 Transcriptional regulator CH54_RS04210 PF00072 Response regulator receiver domain CH54_RS04215 PF00196 Bacterial regulatory proteins, luxR family CH54_RS04215 PF00072 Response regulator receiver domain CH54_RS04220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS04220 PF05231 MASE1 CH54_RS04220 PF07730 Histidine kinase CH54_RS04225 PF07690 Major Facilitator Superfamily CH54_RS04235 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS04240 PF00005 ABC transporter CH54_RS04240 PF08402 TOBE domain CH54_RS04250 PF00067 Cytochrome P450 CH54_RS04255 PF00005 ABC transporter CH54_RS04260 PF04954 Siderophore-interacting protein CH54_RS04260 PF00664 ABC transporter transmembrane region CH54_RS04260 PF00005 ABC transporter CH54_RS04260 PF08021 Siderophore-interacting FAD-binding domain CH54_RS04265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_RS04265 PF00005 ABC transporter CH54_RS04270 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS04270 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_RS04275 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS04280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_RS04285 PF07715 TonB-dependent Receptor Plug Domain CH54_RS04285 PF00593 TonB dependent receptor CH54_RS04295 PF00425 chorismate binding enzyme CH54_RS04300 PF00501 AMP-binding enzyme CH54_RS04300 PF13193 AMP-binding enzyme C-terminal domain CH54_RS04310 PF00975 Thioesterase domain CH54_RS04325 PF00501 AMP-binding enzyme CH54_RS04325 PF00550 Phosphopantetheine attachment site CH54_RS04325 PF08242 Methyltransferase domain CH54_RS04325 PF00668 Condensation domain CH54_RS04330 PF00668 Condensation domain CH54_RS04330 PF00550 Phosphopantetheine attachment site CH54_RS04330 PF00501 AMP-binding enzyme CH54_RS04330 PF13193 AMP-binding enzyme C-terminal domain CH54_RS04340 PF01648 4'-phosphopantetheinyl transferase superfamily CH54_RS04340 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH54_RS04345 PF14765 Polyketide synthase dehydratase CH54_RS04345 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_RS04345 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_RS04345 PF16197 Ketoacyl-synthetase C-terminal extension CH54_RS04345 PF09277 Erythronolide synthase, docking CH54_RS04345 PF08990 Erythronolide synthase docking CH54_RS04345 PF08240 Alcohol dehydrogenase GroES-like domain CH54_RS04345 PF00698 Acyl transferase domain CH54_RS04345 PF00550 Phosphopantetheine attachment site CH54_RS04345 PF08659 KR domain CH54_RS04350 PF01042 Endoribonuclease L-PSP CH54_RS04355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS04355 PF03466 LysR substrate binding domain CH54_RS04360 PF00072 Response regulator receiver domain CH54_RS04360 PF00196 Bacterial regulatory proteins, luxR family CH54_RS04365 PF01627 Hpt domain CH54_RS04365 PF00989 PAS fold CH54_RS04365 PF00072 Response regulator receiver domain CH54_RS04365 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS04365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS04365 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS04375 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_RS04375 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_RS04380 PF13954 PapC N-terminal domain CH54_RS04380 PF13953 PapC C-terminal domain CH54_RS04380 PF00577 Outer membrane usher protein CH54_RS04390 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_RS04390 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_RS04400 PF00072 Response regulator receiver domain CH54_RS04400 PF01584 CheW-like domain CH54_RS04405 PF03466 LysR substrate binding domain CH54_RS04405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS04410 PF00144 Beta-lactamase CH54_RS04415 PF07690 Major Facilitator Superfamily CH54_RS04420 PF00455 DeoR C terminal sensor domain CH54_RS04420 PF08220 DeoR-like helix-turn-helix domain CH54_RS04430 PF02581 Thiamine monophosphate synthase CH54_RS04440 PF01554 MatE CH54_RS04445 PF00764 Arginosuccinate synthase CH54_RS04450 PF03825 Nucleoside H+ symporter CH54_RS04455 PF01048 Phosphorylase superfamily CH54_RS04465 PF03466 LysR substrate binding domain CH54_RS04465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS04470 PF02277 Phosphoribosyltransferase CH54_RS04475 PF00300 Histidine phosphatase superfamily (branch 1) CH54_RS04480 PF02654 Cobalamin-5-phosphate synthase CH54_RS04485 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CH54_RS04490 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH54_RS04495 PF00005 ABC transporter CH54_RS04500 PF02361 Cobalt transport protein CH54_RS04505 PF02553 Cobalt transport protein component CbiN CH54_RS04510 PF01891 Cobalt uptake substrate-specific transmembrane region CH54_RS04515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_RS04520 PF06180 Cobalt chelatase (CbiK) CH54_RS04525 PF02571 Precorrin-6x reductase CbiJ/CobK CH54_RS04530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_RS04535 PF11761 Cobalamin biosynthesis central region CH54_RS04535 PF11760 Cobalamin synthesis G N-terminal CH54_RS04535 PF01890 Cobalamin synthesis G C-terminus CH54_RS04540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_RS04545 PF05175 Methyltransferase small domain CH54_RS04550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_RS04555 PF01888 CbiD CH54_RS04560 PF02570 Precorrin-8X methylmutase CH54_RS04565 PF03186 CobD/Cbib protein CH54_RS04570 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH54_RS04570 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH54_RS04575 PF10114 Sensory domain found in PocR CH54_RS04575 PF12833 Helix-turn-helix domain CH54_RS04580 PF00230 Major intrinsic protein CH54_RS04585 PF00936 BMC domain CH54_RS04590 PF00936 BMC domain CH54_RS04595 PF02286 Dehydratase large subunit CH54_RS04600 PF02288 Dehydratase medium subunit CH54_RS04605 PF02287 Dehydratase small subunit CH54_RS04610 PF18427 DD-reactivating factor swiveling domain CH54_RS04610 PF08841 Diol dehydratase reactivase ATPase-like domain CH54_RS04620 PF00936 BMC domain CH54_RS04630 PF06130 Phosphate propanoyltransferase CH54_RS04640 PF03319 Ethanolamine utilisation protein EutN/carboxysome CH54_RS04645 PF01923 Cobalamin adenosyltransferase CH54_RS04650 PF00171 Aldehyde dehydrogenase family CH54_RS04655 PF00465 Iron-containing alcohol dehydrogenase CH54_RS04660 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH54_RS04660 PF10531 SLBB domain CH54_RS04660 PF13237 4Fe-4S dicluster domain CH54_RS04660 PF13375 RnfC Barrel sandwich hybrid domain CH54_RS04670 PF00936 BMC domain CH54_RS04675 PF10662 Ethanolamine utilisation - propanediol utilisation CH54_RS04680 PF00871 Acetokinase family CH54_RS04685 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_RS04685 PF10414 Sirohaem synthase dimerisation region CH54_RS04685 PF14824 Sirohaem biosynthesis protein central CH54_RS04690 PF00155 Aminotransferase class I and II CH54_RS04695 PF00288 GHMP kinases N terminal domain CH54_RS04700 PF13407 Periplasmic binding protein domain CH54_RS04705 PF00005 ABC transporter CH54_RS04710 PF02653 Branched-chain amino acid transport system / permease component CH54_RS04715 PF02653 Branched-chain amino acid transport system / permease component CH54_RS04720 PF04363 Protein of unknown function (DUF496) CH54_RS04725 PF04632 Fusaric acid resistance protein family CH54_RS04730 PF00550 Phosphopantetheine attachment site CH54_RS04730 PF00501 AMP-binding enzyme CH54_RS04730 PF07993 Male sterility protein CH54_RS04735 PF00929 Exonuclease CH54_RS04735 PF08411 Exonuclease C-terminal CH54_RS04740 PF13520 Amino acid permease CH54_RS04750 PF00465 Iron-containing alcohol dehydrogenase CH54_RS04755 PF00005 ABC transporter CH54_RS04760 PF02653 Branched-chain amino acid transport system / permease component CH54_RS04765 PF01370 NAD dependent epimerase/dehydratase family CH54_RS04770 PF08029 HisG, C-terminal domain CH54_RS04770 PF01634 ATP phosphoribosyltransferase CH54_RS04775 PF00815 Histidinol dehydrogenase CH54_RS04780 PF00155 Aminotransferase class I and II CH54_RS04785 PF00475 Imidazoleglycerol-phosphate dehydratase CH54_RS04790 PF00117 Glutamine amidotransferase class-I CH54_RS04795 PF00977 Histidine biosynthesis protein CH54_RS04800 PF00977 Histidine biosynthesis protein CH54_RS04805 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH54_RS04805 PF01502 Phosphoribosyl-AMP cyclohydrolase CH54_RS04810 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH54_RS04810 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH54_RS04815 PF00483 Nucleotidyl transferase CH54_RS04820 PF00483 Nucleotidyl transferase CH54_RS04825 PF03741 Integral membrane protein TerC family CH54_RS04825 PF00571 CBS domain CH54_RS04825 PF03471 Transporter associated domain CH54_RS04830 PF03606 C4-dicarboxylate anaerobic carrier CH54_RS04835 PF05170 AsmA family CH54_RS04840 PF00692 dUTPase CH54_RS04845 PF00485 Phosphoribulokinase / Uridine kinase family CH54_RS04850 PF10609 NUBPL iron-transfer P-loop NTPase CH54_RS04855 PF09334 tRNA synthetases class I (M) CH54_RS04855 PF01588 Putative tRNA binding domain CH54_RS04875 PF07690 Major Facilitator Superfamily CH54_RS04880 PF03788 LrgA family CH54_RS04885 PF04172 LrgB-like family CH54_RS04890 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH54_RS04890 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH54_RS04895 PF03949 Malic enzyme, NAD binding domain CH54_RS04895 PF00390 Malic enzyme, N-terminal domain CH54_RS04900 PF02698 DUF218 domain CH54_RS04905 PF01455 HupF/HypC family CH54_RS04910 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH54_RS04915 PF12798 4Fe-4S binding domain CH54_RS04915 PF00037 4Fe-4S binding domain CH54_RS04920 PF00361 Proton-conducting membrane transporter CH54_RS04925 PF00146 NADH dehydrogenase CH54_RS04930 PF00361 Proton-conducting membrane transporter CH54_RS04930 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH54_RS04935 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH54_RS04940 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH54_RS04940 PF00361 Proton-conducting membrane transporter CH54_RS04945 PF00374 Nickel-dependent hydrogenase CH54_RS04945 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH54_RS04945 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH54_RS04950 PF12838 4Fe-4S dicluster domain CH54_RS04955 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH54_RS04960 PF07450 Formate hydrogenlyase maturation protein HycH CH54_RS04965 PF01750 Hydrogenase maturation protease CH54_RS04970 PF12800 4Fe-4S binding domain CH54_RS04970 PF13247 4Fe-4S dicluster domain CH54_RS04975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS04975 PF00384 Molybdopterin oxidoreductase CH54_RS04975 PF01568 Molydopterin dinucleotide binding domain CH54_RS04980 PF00158 Sigma-54 interaction domain CH54_RS04980 PF01590 GAF domain CH54_RS04985 PF01226 Formate/nitrite transporter CH54_RS04990 PF02653 Branched-chain amino acid transport system / permease component CH54_RS04995 PF00005 ABC transporter CH54_RS05000 PF13407 Periplasmic binding protein domain CH54_RS05005 PF00356 Bacterial regulatory proteins, lacI family CH54_RS05010 PF04235 Protein of unknown function (DUF418) CH54_RS05015 PF01227 GTP cyclohydrolase I CH54_RS05020 PF06779 Uncharacterised MFS-type transporter YbfB CH54_RS05025 PF03466 LysR substrate binding domain CH54_RS05025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS05030 PF08240 Alcohol dehydrogenase GroES-like domain CH54_RS05030 PF00107 Zinc-binding dehydrogenase CH54_RS05035 PF00756 Putative esterase CH54_RS05055 PF02687 FtsX-like permease family CH54_RS05055 PF12704 MacB-like periplasmic core domain CH54_RS05055 PF00005 ABC transporter CH54_RS05065 PF00083 Sugar (and other) transporter CH54_RS05075 PF03454 MoeA C-terminal region (domain IV) CH54_RS05075 PF00994 Probable molybdopterin binding domain CH54_RS05075 PF03453 MoeA N-terminal region (domain I and II) CH54_RS05080 PF00899 ThiF family CH54_RS05085 PF00005 ABC transporter CH54_RS05085 PF12848 ABC transporter CH54_RS05095 PF13505 Outer membrane protein beta-barrel domain CH54_RS05100 PF00892 EamA-like transporter family CH54_RS05110 PF02469 Fasciclin domain CH54_RS05125 PF13847 Methyltransferase domain CH54_RS05130 PF00210 Ferritin-like domain CH54_RS05135 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS05140 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS05145 PF00005 ABC transporter CH54_RS05150 PF13426 PAS domain CH54_RS05150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_RS05150 PF08447 PAS fold CH54_RS05155 PF05971 RNA methyltransferase CH54_RS05170 PF02885 Glycosyl transferase family, helical bundle domain CH54_RS05175 PF00230 Major intrinsic protein CH54_RS05180 PF06733 DEAD_2 CH54_RS05180 PF00270 DEAD/DEAH box helicase CH54_RS05180 PF13307 Helicase C-terminal domain CH54_RS05185 PF00267 Gram-negative porin CH54_RS05195 PF00892 EamA-like transporter family CH54_RS05210 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS05215 PF00005 ABC transporter CH54_RS05220 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS05225 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH54_RS05240 PF00581 Rhodanese-like domain CH54_RS05245 PF07308 Protein of unknown function (DUF1456) CH54_RS05250 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS05255 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS05265 PF00005 ABC transporter CH54_RS05270 PF04226 Transglycosylase associated protein CH54_RS05280 PF01844 HNH endonuclease CH54_RS05285 PF01928 CYTH domain CH54_RS05290 PF01565 FAD binding domain CH54_RS05290 PF09330 D-lactate dehydrogenase, membrane binding CH54_RS05295 PF00768 D-alanyl-D-alanine carboxypeptidase CH54_RS05305 PF01769 Divalent cation transporter CH54_RS05305 PF03448 MgtE intracellular N domain CH54_RS05305 PF00571 CBS domain CH54_RS05315 PF01207 Dihydrouridine synthase (Dus) CH54_RS05320 PF00270 DEAD/DEAH box helicase CH54_RS05320 PF00271 Helicase conserved C-terminal domain CH54_RS05325 PF00440 Bacterial regulatory proteins, tetR family CH54_RS05325 PF09209 Tetracyclin repressor-like, C-terminal domain CH54_RS05330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_RS05335 PF00005 ABC transporter CH54_RS05350 PF01027 Inhibitor of apoptosis-promoting Bax1 CH54_RS05355 PF02391 MoaE protein CH54_RS05360 PF02597 ThiS family CH54_RS05365 PF01967 MoaC family CH54_RS05370 PF04055 Radical SAM superfamily CH54_RS05370 PF06463 Molybdenum Cofactor Synthesis C CH54_RS05375 PF01933 Uncharacterised protein family UPF0052 CH54_RS05380 PF09905 DNA-binding protein VF530 CH54_RS05385 PF04851 Type III restriction enzyme, res subunit CH54_RS05385 PF02151 UvrB/uvrC motif CH54_RS05385 PF12344 Ultra-violet resistance protein B CH54_RS05385 PF17757 UvrB interaction domain CH54_RS05385 PF00271 Helicase conserved C-terminal domain CH54_RS05390 PF00005 ABC transporter CH54_RS05400 PF08241 Methyltransferase domain CH54_RS05405 PF00155 Aminotransferase class I and II CH54_RS05410 PF04055 Radical SAM superfamily CH54_RS05410 PF06968 Biotin and Thiamin Synthesis associated domain CH54_RS05415 PF00202 Aminotransferase class-III CH54_RS05420 PF10282 Lactonase, 7-bladed beta-propeller CH54_RS05430 PF00005 ABC transporter CH54_RS05430 PF03459 TOBE domain CH54_RS05435 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS05445 PF10766 Multidrug efflux pump-associated protein AcrZ CH54_RS05450 PF03459 TOBE domain CH54_RS05450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS05455 PF00005 ABC transporter CH54_RS05465 PF16363 GDP-mannose 4,6 dehydratase CH54_RS05470 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH54_RS05470 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH54_RS05475 PF08544 GHMP kinases C terminal CH54_RS05475 PF00288 GHMP kinases N terminal domain CH54_RS05475 PF10509 Galactokinase galactose-binding signature CH54_RS05480 PF01263 Aldose 1-epimerase CH54_RS05490 PF00300 Histidine phosphatase superfamily (branch 1) CH54_RS05495 PF00793 DAHP synthetase I family CH54_RS05500 PF01545 Cation efflux family CH54_RS05505 PF04973 Nicotinamide mononucleotide transporter CH54_RS05510 PF02445 Quinolinate synthetase A protein CH54_RS05535 PF16331 TolA binding protein trimerisation CH54_RS05535 PF13174 Tetratricopeptide repeat CH54_RS05540 PF00691 OmpA family CH54_RS05545 PF07676 WD40-like Beta Propeller Repeat CH54_RS05545 PF04052 TolB amino-terminal domain CH54_RS05550 PF06519 TolA C-terminal CH54_RS05550 PF06519 TolA C-terminal CH54_RS05555 PF02472 Biopolymer transport protein ExbD/TolR CH54_RS05560 PF01618 MotA/TolQ/ExbB proton channel family CH54_RS05565 PF03061 Thioesterase superfamily CH54_RS05570 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH54_RS05575 PF08173 Membrane bound YbgT-like protein CH54_RS05580 PF02322 Cytochrome bd terminal oxidase subunit II CH54_RS05585 PF01654 Cytochrome bd terminal oxidase subunit I CH54_RS05590 PF00149 Calcineurin-like phosphoesterase CH54_RS05590 PF02872 5'-nucleotidase, C-terminal domain CH54_RS05595 PF02629 CoA binding domain CH54_RS05595 PF00549 CoA-ligase CH54_RS05600 PF08442 ATP-grasp domain CH54_RS05600 PF00549 CoA-ligase CH54_RS05605 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH54_RS05605 PF02817 e3 binding domain CH54_RS05605 PF00364 Biotin-requiring enzyme CH54_RS05610 PF16078 2-oxoglutarate dehydrogenase N-terminus CH54_RS05610 PF00676 Dehydrogenase E1 component CH54_RS05610 PF16870 2-oxoglutarate dehydrogenase C-terminal CH54_RS05610 PF02779 Transketolase, pyrimidine binding domain CH54_RS05615 PF13085 2Fe-2S iron-sulfur cluster binding domain CH54_RS05620 PF00890 FAD binding domain CH54_RS05620 PF02910 Fumarate reductase flavoprotein C-term CH54_RS05625 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH54_RS05630 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH54_RS05635 PF00285 Citrate synthase, C-terminal domain CH54_RS05640 PF01470 Pyroglutamyl peptidase CH54_RS05655 PF03746 LamB/YcsF family CH54_RS05660 PF02626 Carboxyltransferase domain, subdomain A and B CH54_RS05665 PF02682 Carboxyltransferase domain, subdomain C and D CH54_RS05670 PF01784 NIF3 (NGG1p interacting factor 3) CH54_RS05675 PF02112 cAMP phosphodiesterases class-II CH54_RS05680 PF00875 DNA photolyase CH54_RS05680 PF03441 FAD binding domain of DNA photolyase CH54_RS05685 PF08349 Protein of unknown function (DUF1722) CH54_RS05690 PF10725 Protein of unknown function (DUF2517) CH54_RS05695 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) CH54_RS05700 PF03814 Potassium-transporting ATPase A subunit CH54_RS05710 PF02669 K+-transporting ATPase, c chain CH54_RS05715 PF13492 GAF domain CH54_RS05715 PF13493 Domain of unknown function (DUF4118) CH54_RS05715 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS05715 PF02702 Osmosensitive K+ channel His kinase sensor domain CH54_RS05715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS05720 PF00486 Transcriptional regulatory protein, C terminal CH54_RS05720 PF00072 Response regulator receiver domain CH54_RS05735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH54_RS05735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH54_RS05735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH54_RS05735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH54_RS05740 PF03925 SeqA protein C-terminal domain CH54_RS05740 PF17206 SeqA protein N-terminal domain CH54_RS05745 PF12697 Alpha/beta hydrolase family CH54_RS05750 PF01402 Ribbon-helix-helix protein, copG family CH54_RS05755 PF00672 HAMP domain CH54_RS05755 PF02203 Tar ligand binding domain homologue CH54_RS05755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_RS05760 PF00258 Flavodoxin CH54_RS05765 PF01475 Ferric uptake regulator family CH54_RS05770 PF03173 Putative carbohydrate binding domain CH54_RS05770 PF00728 Glycosyl hydrolase family 20, catalytic domain CH54_RS05770 PF02838 Glycosyl hydrolase family 20, domain 2 CH54_RS05770 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH54_RS05775 PF13982 YbfN-like lipoprotein CH54_RS05780 PF03573 outer membrane porin, OprD family CH54_RS05785 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH54_RS05785 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH54_RS05790 PF00367 phosphotransferase system, EIIB CH54_RS05790 PF02378 Phosphotransferase system, EIIC CH54_RS05790 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH54_RS05795 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH54_RS05800 PF01979 Amidohydrolase family CH54_RS05805 PF01047 MarR family CH54_RS05805 PF00480 ROK family CH54_RS05810 PF13344 Haloacid dehalogenase-like hydrolase CH54_RS05815 PF13537 Glutamine amidotransferase domain CH54_RS05815 PF00733 Asparagine synthase CH54_RS05850 PF01494 FAD binding domain CH54_RS05855 PF00919 Uncharacterized protein family UPF0004 CH54_RS05855 PF01938 TRAM domain CH54_RS05855 PF04055 Radical SAM superfamily CH54_RS05860 PF02562 PhoH-like protein CH54_RS05865 PF02130 Uncharacterized protein family UPF0054 CH54_RS05870 PF03471 Transporter associated domain CH54_RS05870 PF00571 CBS domain CH54_RS05875 PF00795 Carbon-nitrogen hydrolase CH54_RS05885 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS05890 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS05895 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS05900 PF00005 ABC transporter CH54_RS05905 PF01156 Inosine-uridine preferring nucleoside hydrolase CH54_RS05910 PF07295 Zinc-ribbon containing domain CH54_RS05915 PF00133 tRNA synthetases class I (I, L, M and V) CH54_RS05915 PF08264 Anticodon-binding domain of tRNA CH54_RS05915 PF13603 Leucyl-tRNA synthetase, Domain 2 CH54_RS05920 PF04390 Lipopolysaccharide-assembly CH54_RS05925 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH54_RS05925 PF06144 DNA polymerase III, delta subunit CH54_RS05930 PF01467 Cytidylyltransferase-like CH54_RS05940 PF02590 Predicted SPOUT methyltransferase CH54_RS05945 PF00905 Penicillin binding protein transpeptidase domain CH54_RS05945 PF03717 Penicillin-binding Protein dimerisation domain CH54_RS05950 PF01098 Cell cycle protein CH54_RS05955 PF05036 Sporulation related domain CH54_RS05955 PF03330 Lytic transglycolase CH54_RS05960 PF00768 D-alanyl-D-alanine carboxypeptidase CH54_RS05960 PF07943 Penicillin-binding protein 5, C-terminal domain CH54_RS05965 PF04359 Protein of unknown function (DUF493) CH54_RS05970 PF03099 Biotin/lipoate A/B protein ligase family CH54_RS05975 PF04055 Radical SAM superfamily CH54_RS05975 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH54_RS05980 PF02416 mttA/Hcf106 family CH54_RS05985 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS05985 PF05230 MASE2 domain CH54_RS05990 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH54_RS05995 PF00313 'Cold-shock' DNA-binding domain CH54_RS06000 PF00313 'Cold-shock' DNA-binding domain CH54_RS06005 PF00196 Bacterial regulatory proteins, luxR family CH54_RS06030 PF00664 ABC transporter transmembrane region CH54_RS06030 PF00005 ABC transporter CH54_RS06035 PF08007 Cupin superfamily protein CH54_RS06040 PF08274 PhnA Zinc-Ribbon CH54_RS06040 PF03831 PhnA domain CH54_RS06060 PF00232 Glycosyl hydrolase family 1 CH54_RS06065 PF00367 phosphotransferase system, EIIB CH54_RS06065 PF02378 Phosphotransferase system, EIIC CH54_RS06070 PF00356 Bacterial regulatory proteins, lacI family CH54_RS06075 PF04264 YceI-like domain CH54_RS06080 PF01292 Prokaryotic cytochrome b561 CH54_RS06095 PF00005 ABC transporter CH54_RS06100 PF02405 Permease MlaE CH54_RS06105 PF07690 Major Facilitator Superfamily CH54_RS06115 PF07969 Amidohydrolase family CH54_RS06120 PF00324 Amino acid permease CH54_RS06125 PF13406 Transglycosylase SLT domain CH54_RS06135 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS06140 PF00005 ABC transporter CH54_RS06145 PF01810 LysE type translocator CH54_RS06155 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS06155 PF01568 Molydopterin dinucleotide binding domain CH54_RS06155 PF00384 Molybdopterin oxidoreductase CH54_RS06160 PF13247 4Fe-4S dicluster domain CH54_RS06160 PF12800 4Fe-4S binding domain CH54_RS06165 PF04976 DMSO reductase anchor subunit (DmsC) CH54_RS06170 PF02613 Nitrate reductase delta subunit CH54_RS06180 PF05643 Putative bacterial lipoprotein (DUF799) CH54_RS06190 PF03783 Curli production assembly/transport component CsgG CH54_RS06205 PF01292 Prokaryotic cytochrome b561 CH54_RS06210 PF00155 Aminotransferase class I and II CH54_RS06220 PF07350 Protein of unknown function (DUF1479) CH54_RS06225 PF07694 5TMR of 5TMR-LYT CH54_RS06225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS06225 PF06580 Histidine kinase CH54_RS06230 PF04397 LytTr DNA-binding domain CH54_RS06230 PF00072 Response regulator receiver domain CH54_RS06235 PF07690 Major Facilitator Superfamily CH54_RS06240 PF02685 Glucokinase CH54_RS06250 PF03466 LysR substrate binding domain CH54_RS06250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS06255 PF00248 Aldo/keto reductase family CH54_RS06270 PF01566 Natural resistance-associated macrophage protein CH54_RS06275 PF07662 Na+ dependent nucleoside transporter C-terminus CH54_RS06275 PF01773 Na+ dependent nucleoside transporter N-terminus CH54_RS06275 PF07670 Nucleoside recognition CH54_RS06300 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH54_RS06330 PF12843 Putative quorum-sensing-regulated virulence factor CH54_RS06335 PF12826 Helix-hairpin-helix motif CH54_RS06335 PF00533 BRCA1 C Terminus (BRCT) domain CH54_RS06335 PF03120 NAD-dependent DNA ligase OB-fold domain CH54_RS06335 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH54_RS06335 PF01653 NAD-dependent DNA ligase adenylation domain CH54_RS06340 PF04354 ZipA, C-terminal FtsZ-binding domain CH54_RS06350 PF00291 Pyridoxal-phosphate dependent enzyme CH54_RS06355 PF00381 PTS HPr component phosphorylation site CH54_RS06360 PF02896 PEP-utilising enzyme, TIM barrel domain CH54_RS06360 PF05524 PEP-utilising enzyme, N-terminal CH54_RS06360 PF00391 PEP-utilising enzyme, mobile domain CH54_RS06365 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH54_RS06370 PF00672 HAMP domain CH54_RS06370 PF16527 Two-component sensor protein CpxA, periplasmic domain CH54_RS06370 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS06370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS06375 PF00486 Transcriptional regulatory protein, C terminal CH54_RS06375 PF00072 Response regulator receiver domain CH54_RS06380 PF00291 Pyridoxal-phosphate dependent enzyme CH54_RS06385 PF00005 ABC transporter CH54_RS06390 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS06395 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS06405 PF07690 Major Facilitator Superfamily CH54_RS06410 PF01418 Helix-turn-helix domain, rpiR family CH54_RS06410 PF01380 SIS domain CH54_RS06415 PF04074 YhcH/YjgK/YiaL CH54_RS06420 PF00480 ROK family CH54_RS06425 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH54_RS06430 PF00701 Dihydrodipicolinate synthetase family CH54_RS06435 PF04261 Dyp-type peroxidase family CH54_RS06440 PF06572 Protein of unknown function (DUF1131) CH54_RS06445 PF04076 Bacterial OB fold (BOF) protein CH54_RS06450 PF00583 Acetyltransferase (GNAT) family CH54_RS06455 PF01218 Coproporphyrinogen III oxidase CH54_RS06460 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH54_RS06465 PF00390 Malic enzyme, N-terminal domain CH54_RS06465 PF03949 Malic enzyme, NAD binding domain CH54_RS06465 PF01515 Phosphate acetyl/butaryl transferase CH54_RS06470 PF00293 NUDIX domain CH54_RS06475 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CH54_RS06485 PF03264 NapC/NirT cytochrome c family, N-terminal region CH54_RS06490 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH54_RS06495 PF00384 Molybdopterin oxidoreductase CH54_RS06495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS06495 PF01568 Molydopterin dinucleotide binding domain CH54_RS06495 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH54_RS06500 PF03927 NapD protein CH54_RS06510 PF00196 Bacterial regulatory proteins, luxR family CH54_RS06510 PF00072 Response regulator receiver domain CH54_RS06520 PF00873 AcrB/AcrD/AcrF family CH54_RS06525 PF08402 TOBE domain CH54_RS06525 PF00005 ABC transporter CH54_RS06555 PF03960 ArsC family CH54_RS06560 PF01546 Peptidase family M20/M25/M40 CH54_RS06560 PF07687 Peptidase dimerisation domain CH54_RS06565 PF02557 D-alanyl-D-alanine carboxypeptidase CH54_RS06570 PF13980 Uncharacterised protein family (UPF0370) CH54_RS06575 PF02230 Phospholipase/Carboxylesterase CH54_RS06580 PF13718 GNAT acetyltransferase 2 CH54_RS06580 PF17176 tRNA-binding domain CH54_RS06580 PF05127 Helicase CH54_RS06585 PF04284 Protein of unknown function (DUF441) CH54_RS06590 PF04228 Putative neutral zinc metallopeptidase CH54_RS06595 PF01259 SAICAR synthetase CH54_RS06600 PF06804 NlpB/DapX lipoprotein CH54_RS06605 PF00701 Dihydrodipicolinate synthetase family CH54_RS06610 PF01842 ACT domain CH54_RS06615 PF00578 AhpC/TSA family CH54_RS06620 PF01594 AI-2E family transporter CH54_RS06625 PF07720 Tetratricopeptide repeat CH54_RS06625 PF01435 Peptidase family M48 CH54_RS06630 PF03960 ArsC family CH54_RS06635 PF00308 Bacterial dnaA protein CH54_RS06640 PF00860 Permease family CH54_RS06650 PF02769 AIR synthase related protein, C-terminal domain CH54_RS06650 PF00586 AIR synthase related protein, N-terminal domain CH54_RS06655 PF00551 Formyl transferase CH54_RS06660 PF13302 Acetyltransferase (GNAT) domain CH54_RS06670 PF00005 ABC transporter CH54_RS06675 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS06680 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS06685 PF13089 Polyphosphate kinase N-terminal domain CH54_RS06685 PF02503 Polyphosphate kinase middle domain CH54_RS06685 PF13090 Polyphosphate kinase C-terminal domain 2 CH54_RS06685 PF17941 Polyphosphate kinase C-terminal domain 1 CH54_RS06690 PF02541 Ppx/GppA phosphatase family CH54_RS06700 PF00571 CBS domain CH54_RS06700 PF01769 Divalent cation transporter CH54_RS06700 PF03448 MgtE intracellular N domain CH54_RS06705 PF00563 EAL domain CH54_RS06705 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS06705 PF05231 MASE1 CH54_RS06705 PF08447 PAS fold CH54_RS06705 PF08448 PAS fold CH54_RS06705 PF13426 PAS domain CH54_RS06710 PF00012 Hsp70 protein CH54_RS06720 PF13533 Biotin-lipoyl like CH54_RS06725 PF00873 AcrB/AcrD/AcrF family CH54_RS06730 PF00873 AcrB/AcrD/AcrF family CH54_RS06735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS06735 PF00672 HAMP domain CH54_RS06735 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS06740 PF00072 Response regulator receiver domain CH54_RS06740 PF00486 Transcriptional regulatory protein, C terminal CH54_RS06745 PF07411 Domain of unknown function (DUF1508) CH54_RS06750 PF16325 Peptidase family U32 C-terminal domain CH54_RS06750 PF01136 Peptidase family U32 CH54_RS06755 PF00781 Diacylglycerol kinase catalytic domain CH54_RS06760 PF03608 PTS system enzyme II sorbitol-specific factor CH54_RS06765 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CH54_RS06765 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CH54_RS06770 PF03829 PTS system glucitol/sorbitol-specific IIA component CH54_RS06775 PF00106 short chain dehydrogenase CH54_RS06780 PF06923 Glucitol operon activator protein (GutM) CH54_RS06785 PF00455 DeoR C terminal sensor domain CH54_RS06785 PF08220 DeoR-like helix-turn-helix domain CH54_RS06790 PF01380 SIS domain CH54_RS06790 PF00571 CBS domain CH54_RS06805 PF08543 Phosphomethylpyrimidine kinase CH54_RS06815 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH54_RS06815 PF00034 Cytochrome c CH54_RS06820 PF00732 GMC oxidoreductase CH54_RS06820 PF05199 GMC oxidoreductase CH54_RS06855 PF01757 Acyltransferase family CH54_RS06990 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH54_RS07075 PF05063 MT-A70 CH54_RS07090 PF13356 Arm DNA-binding domain CH54_RS07090 PF14659 Phage integrase, N-terminal SAM-like domain CH54_RS07090 PF00589 Phage integrase family CH54_RS07095 PF02540 NAD synthase CH54_RS07095 PF00117 Glutamine amidotransferase class-I CH54_RS07095 PF00958 GMP synthase C terminal domain CH54_RS07100 PF00571 CBS domain CH54_RS07100 PF00478 IMP dehydrogenase / GMP reductase domain CH54_RS07105 PF13742 OB-fold nucleic acid binding domain CH54_RS07105 PF02601 Exonuclease VII, large subunit CH54_RS07110 PF07191 zinc-ribbons CH54_RS07120 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH54_RS07120 PF01926 50S ribosome-binding GTPase CH54_RS07125 PF13360 PQQ-like domain CH54_RS07130 PF09976 Tetratricopeptide repeat-like domain CH54_RS07135 PF13393 Histidyl-tRNA synthetase CH54_RS07135 PF03129 Anticodon binding domain CH54_RS07145 PF04551 GcpE protein CH54_RS07150 PF13464 Domain of unknown function (DUF4115) CH54_RS07160 PF04055 Radical SAM superfamily CH54_RS07165 PF00334 Nucleoside diphosphate kinase CH54_RS07175 PF06832 Penicillin-Binding Protein C-terminus Family CH54_RS07175 PF00905 Penicillin binding protein transpeptidase domain CH54_RS07175 PF00912 Transglycosylase CH54_RS07180 PF01835 MG2 domain CH54_RS07180 PF07703 Alpha-2-macroglobulin bait region domain CH54_RS07180 PF00207 Alpha-2-macroglobulin family CH54_RS07180 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CH54_RS07180 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH54_RS07180 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH54_RS07180 PF17962 Bacterial macroglobulin domain 6 CH54_RS07180 PF07678 A-macroglobulin TED domain CH54_RS07180 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH54_RS07190 PF14581 SseB protein C-terminal domain CH54_RS07190 PF07179 SseB protein N-terminal domain CH54_RS07195 PF12404 Peptidase CH54_RS07195 PF00883 Cytosol aminopeptidase family, catalytic domain CH54_RS07200 PF04384 Iron-sulphur cluster assembly CH54_RS07205 PF00111 2Fe-2S iron-sulfur cluster binding domain CH54_RS07210 PF00012 Hsp70 protein CH54_RS07215 PF07743 HSCB C-terminal oligomerisation domain CH54_RS07215 PF00226 DnaJ domain CH54_RS07220 PF01521 Iron-sulphur cluster biosynthesis CH54_RS07225 PF01592 NifU-like N terminal domain CH54_RS07230 PF00266 Aminotransferase class-V CH54_RS07235 PF02082 Transcriptional regulator CH54_RS07240 PF00588 SpoU rRNA Methylase family CH54_RS07245 PF00459 Inositol monophosphatase family CH54_RS07250 PF03824 High-affinity nickel-transport protein CH54_RS07255 PF06226 Protein of unknown function (DUF1007) CH54_RS07260 PF00874 PRD domain CH54_RS07265 PF12832 MFS_1 like family CH54_RS07270 PF00464 Serine hydroxymethyltransferase CH54_RS07275 PF00175 Oxidoreductase NAD-binding domain CH54_RS07275 PF00042 Globin CH54_RS07275 PF00970 Oxidoreductase FAD-binding domain CH54_RS07280 PF14503 YhfZ C-terminal domain CH54_RS07280 PF14502 Helix-turn-helix domain CH54_RS07290 PF00543 Nitrogen regulatory protein P-II CH54_RS07295 PF00795 Carbon-nitrogen hydrolase CH54_RS07295 PF02540 NAD synthase CH54_RS07300 PF00072 Response regulator receiver domain CH54_RS07300 PF00158 Sigma-54 interaction domain CH54_RS07305 PF13942 YfhG lipoprotein CH54_RS07310 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS07310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS07315 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH54_RS07315 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH54_RS07315 PF02769 AIR synthase related protein, C-terminal domain CH54_RS07320 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS07320 PF01464 Transglycosylase SLT domain CH54_RS07325 PF14437 MafB19-like deaminase CH54_RS07340 PF01380 SIS domain CH54_RS07345 PF13693 Winged helix-turn-helix DNA-binding CH54_RS07350 PF00196 Bacterial regulatory proteins, luxR family CH54_RS07350 PF03472 Autoinducer binding domain CH54_RS07355 PF01418 Helix-turn-helix domain, rpiR family CH54_RS07355 PF01380 SIS domain CH54_RS07360 PF12838 4Fe-4S dicluster domain CH54_RS07365 PF02447 GntP family permease CH54_RS07370 PF01648 4'-phosphopantetheinyl transferase superfamily CH54_RS07375 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH54_RS07380 PF11967 Recombination protein O N terminal CH54_RS07380 PF02565 Recombination protein O C terminal CH54_RS07385 PF01926 50S ribosome-binding GTPase CH54_RS07385 PF07650 KH domain CH54_RS07390 PF14622 Ribonuclease-III-like CH54_RS07390 PF00035 Double-stranded RNA binding motif CH54_RS07395 PF10502 Signal peptidase, peptidase S26 CH54_RS07400 PF06421 GTP-binding protein LepA C-terminus CH54_RS07400 PF03144 Elongation factor Tu domain 2 CH54_RS07400 PF00009 Elongation factor Tu GTP binding domain CH54_RS07400 PF00679 Elongation factor G C-terminus CH54_RS07415 PF03888 MucB/RseB N-terminal domain CH54_RS07415 PF17188 MucB/RseB C-terminal domain CH54_RS07420 PF03873 Anti sigma-E protein RseA, C-terminal domain CH54_RS07420 PF03872 Anti sigma-E protein RseA, N-terminal domain CH54_RS07425 PF08281 Sigma-70, region 4 CH54_RS07425 PF04542 Sigma-70 region 2 CH54_RS07430 PF00890 FAD binding domain CH54_RS07430 PF02910 Fumarate reductase flavoprotein C-term CH54_RS07435 PF05175 Methyltransferase small domain CH54_RS07440 PF00270 DEAD/DEAH box helicase CH54_RS07440 PF00271 Helicase conserved C-terminal domain CH54_RS07445 PF01228 Glycine radical CH54_RS07450 PF03167 Uracil DNA glycosylase superfamily CH54_RS07455 PF01025 GrpE CH54_RS07460 PF01513 ATP-NAD kinase CH54_RS07465 PF02463 RecF/RecN/SMC N terminal domain CH54_RS07470 PF04355 SmpA / OmlA family CH54_RS07475 PF03658 RnfH family Ubiquitin CH54_RS07480 PF03364 Polyketide cyclase / dehydrase and lipid transport CH54_RS07485 PF01668 SmpB protein CH54_RS07490 PF13356 Arm DNA-binding domain CH54_RS07490 PF00589 Phage integrase family CH54_RS07510 PF01555 DNA methylase CH54_RS07515 PF12705 PD-(D/E)XK nuclease superfamily CH54_RS07515 PF13361 UvrD-like helicase C-terminal domain CH54_RS07515 PF00580 UvrD/REP helicase N-terminal domain CH54_RS07530 PF05930 Prophage CP4-57 regulatory protein (AlpA) CH54_RS07560 PF06067 Domain of unknown function (DUF932) CH54_RS07565 PF04002 RadC-like JAB domain CH54_RS07570 PF06755 CbtA_toxin of type IV toxin-antitoxin system CH54_RS07575 PF04794 YdjC-like protein CH54_RS07580 PF12833 Helix-turn-helix domain CH54_RS07580 PF07883 Cupin domain CH54_RS07585 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH54_RS07590 PF00232 Glycosyl hydrolase family 1 CH54_RS07595 PF02378 Phosphotransferase system, EIIC CH54_RS07600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH54_RS07605 PF07995 Glucose / Sorbosone dehydrogenase CH54_RS07610 PF00248 Aldo/keto reductase family CH54_RS07615 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH54_RS07620 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH54_RS07625 PF02254 TrkA-N domain CH54_RS07625 PF07885 Ion channel CH54_RS07630 PF06411 HdeA/HdeB family CH54_RS07635 PF03824 High-affinity nickel-transport protein CH54_RS07640 PF03253 Urea transporter CH54_RS07645 PF01774 UreD urease accessory protein CH54_RS07650 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH54_RS07655 PF01730 UreF CH54_RS07660 PF05194 UreE urease accessory protein, C-terminal domain CH54_RS07660 PF02814 UreE urease accessory protein, N-terminal domain CH54_RS07665 PF00449 Urease alpha-subunit, N-terminal domain CH54_RS07665 PF01979 Amidohydrolase family CH54_RS07670 PF00699 Urease beta subunit CH54_RS07675 PF00547 Urease, gamma subunit CH54_RS07685 PF00005 ABC transporter CH54_RS07690 PF00005 ABC transporter CH54_RS07695 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS07695 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_RS07700 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS07705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_RS07720 PF01965 DJ-1/PfpI family CH54_RS07725 PF00313 'Cold-shock' DNA-binding domain CH54_RS07735 PF06711 Protein of unknown function (DUF1198) CH54_RS07740 PF09400 Protein of unknown function (DUF2002) CH54_RS07745 PF07690 Major Facilitator Superfamily CH54_RS07755 PF06392 Acid shock protein repeat CH54_RS07760 PF05957 Bacterial protein of unknown function (DUF883) CH54_RS07765 PF00155 Aminotransferase class I and II CH54_RS07765 PF00392 Bacterial regulatory proteins, gntR family CH54_RS07770 PF02627 Carboxymuconolactone decarboxylase family CH54_RS07775 PF00462 Glutaredoxin CH54_RS07780 PF07972 NrdI Flavodoxin like CH54_RS07785 PF00317 Ribonucleotide reductase, all-alpha domain CH54_RS07785 PF08343 Ribonucleotide reductase N-terminal CH54_RS07785 PF02867 Ribonucleotide reductase, barrel domain CH54_RS07790 PF00268 Ribonucleotide reductase, small chain CH54_RS07795 PF00005 ABC transporter CH54_RS07795 PF00571 CBS domain CH54_RS07800 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS07805 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH54_RS07815 PF00929 Exonuclease CH54_RS07820 PF00075 RNase H CH54_RS07825 PF08241 Methyltransferase domain CH54_RS07830 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH54_RS07830 PF00753 Metallo-beta-lactamase superfamily CH54_RS07835 PF01476 LysM domain CH54_RS07835 PF01464 Transglycosylase SLT domain CH54_RS07840 PF03372 Endonuclease/Exonuclease/phosphatase family CH54_RS07850 PF07690 Major Facilitator Superfamily CH54_RS07855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS07855 PF03466 LysR substrate binding domain CH54_RS07860 PF00248 Aldo/keto reductase family CH54_RS07890 PF02861 Clp amino terminal domain, pathogenicity island component CH54_RS07890 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_RS07890 PF17871 AAA lid domain CH54_RS07890 PF07724 AAA domain (Cdc48 subfamily) CH54_RS07890 PF00004 ATPase family associated with various cellular activities (AAA) CH54_RS07895 PF02578 Multi-copper polyphenol oxidoreductase laccase CH54_RS07900 PF00849 RNA pseudouridylate synthase CH54_RS07900 PF01479 S4 domain CH54_RS07905 PF13525 Outer membrane lipoprotein CH54_RS07910 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH54_RS07915 PF01817 Chorismate mutase type II CH54_RS07915 PF00800 Prephenate dehydratase CH54_RS07920 PF01817 Chorismate mutase type II CH54_RS07920 PF02153 Prephenate dehydrogenase CH54_RS07925 PF00793 DAHP synthetase I family CH54_RS07930 PF04397 LytTr DNA-binding domain CH54_RS07930 PF00072 Response regulator receiver domain CH54_RS07935 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH54_RS07940 PF04338 Protein of unknown function, DUF481 CH54_RS07945 PF01245 Ribosomal protein L19 CH54_RS07950 PF01746 tRNA (Guanine-1)-methyltransferase CH54_RS07955 PF01782 RimM N-terminal domain CH54_RS07955 PF05239 PRC-barrel domain CH54_RS07960 PF00886 Ribosomal protein S16 CH54_RS07965 PF00448 SRP54-type protein, GTPase domain CH54_RS07965 PF02978 Signal peptide binding domain CH54_RS07965 PF02881 SRP54-type protein, helical bundle domain CH54_RS07970 PF01578 Cytochrome C assembly protein CH54_RS07975 PF01595 Cyclin M transmembrane N-terminal domain CH54_RS07975 PF03471 Transporter associated domain CH54_RS07975 PF00571 CBS domain CH54_RS07980 PF02664 S-Ribosylhomocysteinase (LuxS) CH54_RS07985 PF04262 Glutamate-cysteine ligase CH54_RS07990 PF09335 SNARE associated Golgi protein CH54_RS07995 PF13419 Haloacid dehalogenase-like hydrolase CH54_RS08020 PF02599 Global regulator protein family CH54_RS08025 PF02272 DHHA1 domain CH54_RS08025 PF01411 tRNA synthetases class II (A) CH54_RS08025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH54_RS08030 PF02631 RecX family CH54_RS08035 PF00154 recA bacterial DNA recombination protein CH54_RS08040 PF02464 Competence-damaged protein CH54_RS08045 PF07690 Major Facilitator Superfamily CH54_RS08050 PF02613 Nitrate reductase delta subunit CH54_RS08055 PF04976 DMSO reductase anchor subunit (DmsC) CH54_RS08060 PF13247 4Fe-4S dicluster domain CH54_RS08060 PF12800 4Fe-4S binding domain CH54_RS08065 PF01568 Molydopterin dinucleotide binding domain CH54_RS08065 PF00384 Molybdopterin oxidoreductase CH54_RS08065 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS08070 PF05681 Fumarate hydratase (Fumerase) CH54_RS08070 PF05683 Fumarase C-terminus CH54_RS08075 PF13458 Periplasmic binding protein CH54_RS08080 PF02653 Branched-chain amino acid transport system / permease component CH54_RS08085 PF11862 Domain of unknown function (DUF3382) CH54_RS08085 PF02653 Branched-chain amino acid transport system / permease component CH54_RS08090 PF00005 ABC transporter CH54_RS08095 PF00005 ABC transporter CH54_RS08120 PF04198 Putative sugar-binding domain CH54_RS08120 PF13936 Helix-turn-helix domain CH54_RS08125 PF00106 short chain dehydrogenase CH54_RS08130 PF03610 PTS system fructose IIA component CH54_RS08135 PF03830 PTS system sorbose subfamily IIB component CH54_RS08140 PF03609 PTS system sorbose-specific iic component CH54_RS08145 PF03613 PTS system mannose/fructose/sorbose family IID component CH54_RS08150 PF00107 Zinc-binding dehydrogenase CH54_RS08150 PF08240 Alcohol dehydrogenase GroES-like domain CH54_RS08155 PF01022 Bacterial regulatory protein, arsR family CH54_RS08160 PF03144 Elongation factor Tu domain 2 CH54_RS08160 PF00679 Elongation factor G C-terminus CH54_RS08160 PF14492 Elongation Factor G, domain II CH54_RS08160 PF00009 Elongation factor Tu GTP binding domain CH54_RS08160 PF03764 Elongation factor G, domain IV CH54_RS08170 PF14376 Haem-binding domain CH54_RS08170 PF00034 Cytochrome c CH54_RS08170 PF03150 Di-haem cytochrome c peroxidase CH54_RS08175 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS08195 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_RS08195 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_RS08200 PF02321 Outer membrane efflux protein CH54_RS08205 PF12704 MacB-like periplasmic core domain CH54_RS08205 PF00005 ABC transporter CH54_RS08205 PF02687 FtsX-like permease family CH54_RS08210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_RS08215 PF00664 ABC transporter transmembrane region CH54_RS08215 PF00005 ABC transporter CH54_RS08215 PF03412 Peptidase C39 family CH54_RS08240 PF00419 Fimbrial protein CH54_RS08245 PF00419 Fimbrial protein CH54_RS08255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_RS08255 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_RS08260 PF00577 Outer membrane usher protein CH54_RS08260 PF13954 PapC N-terminal domain CH54_RS08260 PF13953 PapC C-terminal domain CH54_RS08265 PF00419 Fimbrial protein CH54_RS08270 PF00419 Fimbrial protein CH54_RS08285 PF05192 MutS domain III CH54_RS08285 PF05188 MutS domain II CH54_RS08285 PF01624 MutS domain I CH54_RS08285 PF00488 MutS domain V CH54_RS08285 PF05190 MutS family domain IV CH54_RS08290 PF04545 Sigma-70, region 4 CH54_RS08290 PF04539 Sigma-70 region 3 CH54_RS08290 PF00140 Sigma-70 factor, region 1.2 CH54_RS08290 PF04542 Sigma-70 region 2 CH54_RS08295 PF01551 Peptidase family M23 CH54_RS08295 PF01476 LysM domain CH54_RS08305 PF01975 Survival protein SurE CH54_RS08310 PF01142 tRNA pseudouridine synthase D (TruD) CH54_RS08315 PF02542 YgbB family CH54_RS08320 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH54_RS08325 PF04977 Septum formation initiator CH54_RS08330 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS08335 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS08340 PF00005 ABC transporter CH54_RS08345 PF12084 Protein of unknown function (DUF3561) CH54_RS08355 PF00009 Elongation factor Tu GTP binding domain CH54_RS08360 PF01507 Phosphoadenosine phosphosulfate reductase family CH54_RS08365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_RS08365 PF14824 Sirohaem biosynthesis protein central CH54_RS08365 PF10414 Sirohaem synthase dimerisation region CH54_RS08370 PF04389 Peptidase family M28 CH54_RS08375 PF01507 Phosphoadenosine phosphosulfate reductase family CH54_RS08380 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH54_RS08380 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH54_RS08385 PF00175 Oxidoreductase NAD-binding domain CH54_RS08385 PF00258 Flavodoxin CH54_RS08385 PF00667 FAD binding domain CH54_RS08390 PF01242 6-pyruvoyl tetrahydropterin synthase CH54_RS08395 PF04055 Radical SAM superfamily CH54_RS08400 PF00080 Copper/zinc superoxide dismutase (SODC) CH54_RS08420 PF00113 Enolase, C-terminal TIM barrel domain CH54_RS08420 PF03952 Enolase, N-terminal domain CH54_RS08425 PF00117 Glutamine amidotransferase class-I CH54_RS08425 PF06418 CTP synthase N-terminus CH54_RS08430 PF03819 MazG nucleotide pyrophosphohydrolase domain CH54_RS08435 PF13291 ACT domain CH54_RS08435 PF04607 Region found in RelA / SpoT proteins CH54_RS08435 PF02824 TGS domain CH54_RS08445 PF00672 HAMP domain CH54_RS08445 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS08445 PF01627 Hpt domain CH54_RS08445 PF00072 Response regulator receiver domain CH54_RS08445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS08445 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH54_RS08450 PF00595 PDZ domain CH54_RS08455 PF13286 Phosphohydrolase-associated domain CH54_RS08455 PF01966 HD domain CH54_RS08460 PF01048 Phosphorylase superfamily CH54_RS08465 PF01497 Periplasmic binding protein CH54_RS08470 PF03458 UPF0126 domain CH54_RS08475 PF01521 Iron-sulphur cluster biosynthesis CH54_RS08480 PF00654 Voltage gated chloride channel CH54_RS08485 PF00202 Aminotransferase class-III CH54_RS08490 PF01032 FecCD transport family CH54_RS08495 PF01497 Periplasmic binding protein CH54_RS08500 PF00005 ABC transporter CH54_RS08505 PF14814 Bifunctional transglycosylase second domain CH54_RS08505 PF00905 Penicillin binding protein transpeptidase domain CH54_RS08505 PF00912 Transglycosylase CH54_RS08505 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH54_RS08510 PF00270 DEAD/DEAH box helicase CH54_RS08510 PF00271 Helicase conserved C-terminal domain CH54_RS08510 PF08482 ATP-dependent helicase C-terminal CH54_RS08510 PF04408 Helicase associated domain (HA2) CH54_RS08515 PF02834 LigT like Phosphoesterase CH54_RS08520 PF03749 Sugar fermentation stimulation protein RE domain CH54_RS08520 PF17746 SfsA N-terminal OB domain CH54_RS08525 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH54_RS08530 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH54_RS08535 PF12627 Probable RNA and SrmB- binding site of polymerase A CH54_RS08535 PF12626 Polymerase A arginine-rich C-terminus CH54_RS08535 PF01743 Poly A polymerase head domain CH54_RS08540 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH54_RS08545 PF02548 Ketopantoate hydroxymethyltransferase CH54_RS08550 PF02569 Pantoate-beta-alanine ligase CH54_RS08555 PF02261 Aspartate decarboxylase CH54_RS08560 PF01522 Polysaccharide deacetylase CH54_RS08565 PF01061 ABC-2 type transporter CH54_RS08570 PF00005 ABC transporter CH54_RS08575 PF00484 Carbonic anhydrase CH54_RS08580 PF00156 Phosphoribosyl transferase domain CH54_RS08590 PF00394 Multicopper oxidase CH54_RS08590 PF07731 Multicopper oxidase CH54_RS08590 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH54_RS08590 PF07732 Multicopper oxidase CH54_RS08595 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH54_RS08600 PF17284 Spermidine synthase tetramerisation domain CH54_RS08605 PF02675 S-adenosylmethionine decarboxylase CH54_RS08610 PF07262 CDI immunity protein CH54_RS08615 PF13332 Hemagglutinin repeat CH54_RS08615 PF04829 Pre-toxin domain with VENN motif CH54_RS08615 PF05860 haemagglutination activity domain CH54_RS08615 PF05594 Haemagluttinin repeat CH54_RS08615 PF14436 Bacterial EndoU nuclease CH54_RS08620 PF00892 EamA-like transporter family CH54_RS08625 PF06062 Uncharacterised protein family (UPF0231) CH54_RS08630 PF00330 Aconitase family (aconitate hydratase) CH54_RS08630 PF06434 Aconitate hydratase 2 N-terminus CH54_RS08630 PF11791 Aconitate B N-terminal domain CH54_RS08635 PF07715 TonB-dependent Receptor Plug Domain CH54_RS08635 PF00593 TonB dependent receptor CH54_RS08640 PF12833 Helix-turn-helix domain CH54_RS08640 PF01965 DJ-1/PfpI family CH54_RS08650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH54_RS08650 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_RS08655 PF02817 e3 binding domain CH54_RS08655 PF00364 Biotin-requiring enzyme CH54_RS08655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH54_RS08660 PF17831 Pyruvate dehydrogenase E1 component middle domain CH54_RS08660 PF00456 Transketolase, thiamine diphosphate binding domain CH54_RS08665 PF07729 FCD domain CH54_RS08665 PF00392 Bacterial regulatory proteins, gntR family CH54_RS08670 PF00324 Amino acid permease CH54_RS08675 PF17113 Regulatory signalling modulator protein AmpE CH54_RS08680 PF01510 N-acetylmuramoyl-L-alanine amidase CH54_RS08685 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH54_RS08685 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH54_RS08690 PF07963 Prokaryotic N-terminal methylation motif CH54_RS08695 PF00437 Type II/IV secretion system protein CH54_RS08695 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH54_RS08700 PF00482 Type II secretion system (T2SS), protein F CH54_RS08705 PF00478 IMP dehydrogenase / GMP reductase domain CH54_RS08710 PF01121 Dephospho-CoA kinase CH54_RS08715 PF07072 Cell division protein CH54_RS08720 PF03884 DNA gyrase inhibitor YacG CH54_RS08725 PF00293 NUDIX domain CH54_RS08730 PF02810 SEC-C motif CH54_RS08730 PF07517 SecA DEAD-like domain CH54_RS08730 PF01043 SecA preprotein cross-linking domain CH54_RS08730 PF07516 SecA Wing and Scaffold domain CH54_RS08735 PF06558 Secretion monitor precursor protein (SecM) CH54_RS08745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH54_RS08750 PF12327 FtsZ family, C-terminal domain CH54_RS08750 PF00091 Tubulin/FtsZ family, GTPase domain CH54_RS08755 PF02491 SHS2 domain inserted in FTSA CH54_RS08760 PF03799 Cell division protein FtsQ CH54_RS08760 PF08478 POTRA domain, FtsQ-type CH54_RS08765 PF01820 D-ala D-ala ligase N-terminus CH54_RS08765 PF07478 D-ala D-ala ligase C-terminus CH54_RS08770 PF08245 Mur ligase middle domain CH54_RS08770 PF02875 Mur ligase family, glutamate ligase domain CH54_RS08770 PF01225 Mur ligase family, catalytic domain CH54_RS08775 PF03033 Glycosyltransferase family 28 N-terminal domain CH54_RS08775 PF04101 Glycosyltransferase family 28 C-terminal domain CH54_RS08780 PF01098 Cell cycle protein CH54_RS08785 PF08245 Mur ligase middle domain CH54_RS08785 PF02875 Mur ligase family, glutamate ligase domain CH54_RS08790 PF00953 Glycosyl transferase family 4 CH54_RS08790 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH54_RS08795 PF02875 Mur ligase family, glutamate ligase domain CH54_RS08795 PF01225 Mur ligase family, catalytic domain CH54_RS08795 PF08245 Mur ligase middle domain CH54_RS08800 PF01225 Mur ligase family, catalytic domain CH54_RS08800 PF08245 Mur ligase middle domain CH54_RS08800 PF02875 Mur ligase family, glutamate ligase domain CH54_RS08805 PF03717 Penicillin-binding Protein dimerisation domain CH54_RS08805 PF00905 Penicillin binding protein transpeptidase domain CH54_RS08810 PF04999 Cell division protein FtsL CH54_RS08815 PF01795 MraW methylase family CH54_RS08820 PF02381 MraZ protein, putative antitoxin-like CH54_RS08825 PF06610 L-alanine exporter CH54_RS08830 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH54_RS08830 PF00356 Bacterial regulatory proteins, lacI family CH54_RS08835 PF10369 Small subunit of acetolactate synthase CH54_RS08840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_RS08840 PF00205 Thiamine pyrophosphate enzyme, central domain CH54_RS08840 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_RS08845 PF00501 AMP-binding enzyme CH54_RS08850 PF03466 LysR substrate binding domain CH54_RS08850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS08855 PF00682 HMGL-like CH54_RS08855 PF08502 LeuA allosteric (dimerisation) domain CH54_RS08860 PF00180 Isocitrate/isopropylmalate dehydrogenase CH54_RS08865 PF00330 Aconitase family (aconitate hydratase) CH54_RS08870 PF00694 Aconitase C-terminal domain CH54_RS08875 PF01212 Beta-eliminating lyase CH54_RS08880 PF07690 Major Facilitator Superfamily CH54_RS08885 PF02901 Pyruvate formate lyase-like CH54_RS08885 PF01228 Glycine radical CH54_RS08890 PF04055 Radical SAM superfamily CH54_RS08895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_RS08895 PF12793 Sugar transport-related sRNA regulator N-term CH54_RS08905 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS08910 PF00005 ABC transporter CH54_RS08915 PF09335 SNARE associated Golgi protein CH54_RS08920 PF03104 DNA polymerase family B, exonuclease domain CH54_RS08920 PF00136 DNA polymerase family B CH54_RS08925 PF18339 RapA N-terminal Tudor like domain 1 CH54_RS08925 PF00176 SNF2 family N-terminal domain CH54_RS08925 PF00271 Helicase conserved C-terminal domain CH54_RS08925 PF18337 RapA N-terminal Tudor like domain CH54_RS08925 PF12137 RNA polymerase recycling family C-terminal CH54_RS08930 PF00849 RNA pseudouridylate synthase CH54_RS08935 PF05099 Tellurite resistance protein TerB CH54_RS08935 PF00226 DnaJ domain CH54_RS08940 PF03968 OstA-like protein CH54_RS08940 PF04453 LPS transport system D CH54_RS08945 PF09312 SurA N-terminal domain CH54_RS08945 PF00639 PPIC-type PPIASE domain CH54_RS08950 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH54_RS08955 PF00398 Ribosomal RNA adenine dimethylase CH54_RS08960 PF04379 ApaG domain CH54_RS08965 PF00149 Calcineurin-like phosphoesterase CH54_RS08980 PF00186 Dihydrofolate reductase CH54_RS08985 PF12821 Threonine/Serine exporter, ThrE CH54_RS08990 PF06738 Putative threonine/serine exporter CH54_RS08995 PF01810 LysE type translocator CH54_RS09000 PF02142 MGS-like domain CH54_RS09000 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH54_RS09000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH54_RS09005 PF00117 Glutamine amidotransferase class-I CH54_RS09005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH54_RS09010 PF01113 Dihydrodipicolinate reductase, N-terminus CH54_RS09010 PF05173 Dihydrodipicolinate reductase, C-terminus CH54_RS09015 PF02401 LytB protein CH54_RS09020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH54_RS09025 PF01252 Signal peptidase (SPase) II CH54_RS09030 PF08264 Anticodon-binding domain of tRNA CH54_RS09030 PF06827 Zinc finger found in FPG and IleRS CH54_RS09030 PF00133 tRNA synthetases class I (I, L, M and V) CH54_RS09035 PF06574 FAD synthetase CH54_RS09035 PF01687 Riboflavin kinase CH54_RS09040 PF01649 Ribosomal protein S20 CH54_RS09045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS09045 PF03466 LysR substrate binding domain CH54_RS09050 PF06965 Na+/H+ antiporter 1 CH54_RS09055 PF00684 DnaJ central domain CH54_RS09055 PF01556 DnaJ C terminal domain CH54_RS09055 PF00226 DnaJ domain CH54_RS09060 PF00012 Hsp70 protein CH54_RS09065 PF01184 GPR1/FUN34/yaaH family CH54_RS09075 PF07690 Major Facilitator Superfamily CH54_RS09080 PF00994 Probable molybdopterin binding domain CH54_RS09085 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH54_RS09090 PF03883 Peroxide stress protein YaaA CH54_RS09095 PF00291 Pyridoxal-phosphate dependent enzyme CH54_RS09095 PF14821 Threonine synthase N terminus CH54_RS09100 PF00288 GHMP kinases N terminal domain CH54_RS09100 PF08544 GHMP kinases C terminal CH54_RS09105 PF03447 Homoserine dehydrogenase, NAD binding domain CH54_RS09105 PF00742 Homoserine dehydrogenase CH54_RS09105 PF13840 ACT domain CH54_RS09105 PF01842 ACT domain CH54_RS09105 PF00696 Amino acid kinase family CH54_RS09115 PF00486 Transcriptional regulatory protein, C terminal CH54_RS09115 PF00072 Response regulator receiver domain CH54_RS09120 PF05981 CreA protein CH54_RS09125 PF06445 GyrI-like small molecule binding domain CH54_RS09125 PF12833 Helix-turn-helix domain CH54_RS09130 PF00300 Histidine phosphatase superfamily (branch 1) CH54_RS09135 PF01931 Protein of unknown function DUF84 CH54_RS09140 PF01371 Trp repressor protein CH54_RS09145 PF14718 Soluble lytic murein transglycosylase L domain CH54_RS09145 PF01464 Transglycosylase SLT domain CH54_RS09150 PF00689 Cation transporting ATPase, C-terminus CH54_RS09150 PF00690 Cation transporter/ATPase, N-terminus CH54_RS09155 PF12848 ABC transporter CH54_RS09155 PF00005 ABC transporter CH54_RS09160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS09160 PF03466 LysR substrate binding domain CH54_RS09165 PF00107 Zinc-binding dehydrogenase CH54_RS09165 PF08240 Alcohol dehydrogenase GroES-like domain CH54_RS09170 PF01381 Helix-turn-helix CH54_RS09170 PF13521 AAA domain CH54_RS09180 PF18073 Rubredoxin metal binding domain CH54_RS09185 PF18429 Domain of unknown function (DUF5609) CH54_RS09190 PF10144 Bacterial virulence factor haemolysin CH54_RS09195 PF01048 Phosphorylase superfamily CH54_RS09200 PF01676 Metalloenzyme superfamily CH54_RS09205 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH54_RS09205 PF00591 Glycosyl transferase family, a/b domain CH54_RS09205 PF02885 Glycosyl transferase family, helical bundle domain CH54_RS09210 PF01791 DeoC/LacD family aldolase CH54_RS09215 PF07662 Na+ dependent nucleoside transporter C-terminus CH54_RS09215 PF01773 Na+ dependent nucleoside transporter N-terminus CH54_RS09215 PF07670 Nucleoside recognition CH54_RS09220 PF01026 TatD related DNase CH54_RS09225 PF01734 Patatin-like phospholipase CH54_RS09230 PF04972 BON domain CH54_RS09235 PF00009 Elongation factor Tu GTP binding domain CH54_RS09235 PF03144 Elongation factor Tu domain 2 CH54_RS09235 PF16658 Class II release factor RF3, C-terminal domain CH54_RS09240 PF00583 Acetyltransferase (GNAT) family CH54_RS09245 PF03603 DNA polymerase III psi subunit CH54_RS09250 PF08468 Methyltransferase small domain N-terminal CH54_RS09250 PF05175 Methyltransferase small domain CH54_RS09255 PF00248 Aldo/keto reductase family CH54_RS09260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS09260 PF03466 LysR substrate binding domain CH54_RS09275 PF07256 Protein of unknown function (DUF1435) CH54_RS09280 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS09285 PF00989 PAS fold CH54_RS09285 PF02954 Bacterial regulatory protein, Fis family CH54_RS09285 PF00158 Sigma-54 interaction domain CH54_RS09310 PF16861 Carbamoyltransferase C-terminus CH54_RS09310 PF02543 Carbamoyltransferase N-terminus CH54_RS09320 PF00381 PTS HPr component phosphorylation site CH54_RS09320 PF00391 PEP-utilising enzyme, mobile domain CH54_RS09320 PF05524 PEP-utilising enzyme, N-terminal CH54_RS09320 PF03610 PTS system fructose IIA component CH54_RS09325 PF02734 DAK2 domain CH54_RS09330 PF02733 Dak1 domain CH54_RS09335 PF00465 Iron-containing alcohol dehydrogenase CH54_RS09340 PF00873 AcrB/AcrD/AcrF family CH54_RS09345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_RS09355 PF13520 Amino acid permease CH54_RS09365 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH54_RS09370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH54_RS09370 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH54_RS09375 PF00325 Bacterial regulatory proteins, crp family CH54_RS09375 PF04198 Putative sugar-binding domain CH54_RS09380 PF00005 ABC transporter CH54_RS09385 PF02653 Branched-chain amino acid transport system / permease component CH54_RS09390 PF02653 Branched-chain amino acid transport system / permease component CH54_RS09395 PF13407 Periplasmic binding protein domain CH54_RS09400 PF01791 DeoC/LacD family aldolase CH54_RS09405 PF03992 Antibiotic biosynthesis monooxygenase CH54_RS09410 PF10696 Protein of unknown function (DUF2501) CH54_RS09435 PF00583 Acetyltransferase (GNAT) family CH54_RS09445 PF17287 POTRA domain CH54_RS09445 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH54_RS09445 PF08479 POTRA domain, ShlB-type CH54_RS09450 PF05860 haemagglutination activity domain CH54_RS09450 PF13332 Hemagglutinin repeat CH54_RS09450 PF04829 Pre-toxin domain with VENN motif CH54_RS09450 PF13018 Extended Signal Peptide of Type V secretion system CH54_RS09460 PF13018 Extended Signal Peptide of Type V secretion system CH54_RS09460 PF13332 Hemagglutinin repeat CH54_RS09460 PF05860 haemagglutination activity domain CH54_RS09460 PF04829 Pre-toxin domain with VENN motif CH54_RS09470 PF01527 Transposase CH54_RS09475 PF00665 Integrase core domain CH54_RS09480 PF02384 N-6 DNA Methylase CH54_RS09495 PF03739 Lipopolysaccharide export system permease LptF/LptG CH54_RS09500 PF03739 Lipopolysaccharide export system permease LptF/LptG CH54_RS09505 PF02789 Cytosol aminopeptidase family, N-terminal domain CH54_RS09505 PF00883 Cytosol aminopeptidase family, catalytic domain CH54_RS09510 PF04364 DNA polymerase III chi subunit, HolC CH54_RS09515 PF08264 Anticodon-binding domain of tRNA CH54_RS09515 PF10458 Valyl tRNA synthetase tRNA binding arm CH54_RS09515 PF00133 tRNA synthetases class I (I, L, M and V) CH54_RS09525 PF00583 Acetyltransferase (GNAT) family CH54_RS09530 PF06877 Regulator of ribonuclease activity B CH54_RS09535 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH54_RS09535 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH54_RS09540 PF04074 YhcH/YjgK/YiaL CH54_RS09550 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS09555 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_RS09555 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS09560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_RS09560 PF00005 ABC transporter CH54_RS09565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_RS09565 PF00005 ABC transporter CH54_RS09570 PF03477 ATP cone domain CH54_RS09570 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH54_RS09580 PF07702 UTRA domain CH54_RS09580 PF00392 Bacterial regulatory proteins, gntR family CH54_RS09585 PF06754 Phosphonate metabolism protein PhnG CH54_RS09590 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH54_RS09595 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH54_RS09600 PF06007 Phosphonate metabolism protein PhnJ CH54_RS09605 PF00005 ABC transporter CH54_RS09610 PF00005 ABC transporter CH54_RS09615 PF07969 Amidohydrolase family CH54_RS09625 PF12706 Beta-lactamase superfamily domain CH54_RS09630 PF13460 NAD(P)H-binding CH54_RS09645 PF17912 MalK OB fold domain CH54_RS09645 PF00005 ABC transporter CH54_RS09645 PF03459 TOBE domain CH54_RS09650 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS09655 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS09660 PF13416 Bacterial extracellular solute-binding protein CH54_RS09675 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH54_RS09675 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH54_RS09675 PF01276 Orn/Lys/Arg decarboxylase, major domain CH54_RS09680 PF13520 Amino acid permease CH54_RS09685 PF01541 GIY-YIG catalytic domain CH54_RS09690 PF13508 Acetyltransferase (GNAT) domain CH54_RS09695 PF02036 SCP-2 sterol transfer family CH54_RS09700 PF01136 Peptidase family U32 CH54_RS09705 PF01136 Peptidase family U32 CH54_RS09710 PF00296 Luciferase-like monooxygenase CH54_RS09715 PF00270 DEAD/DEAH box helicase CH54_RS09715 PF00271 Helicase conserved C-terminal domain CH54_RS09715 PF12343 Cold shock protein DEAD box A CH54_RS09715 PF03880 DbpA RNA binding domain CH54_RS09720 PF07719 Tetratricopeptide repeat CH54_RS09720 PF13181 Tetratricopeptide repeat CH54_RS09725 PF00575 S1 RNA binding domain CH54_RS09725 PF01138 3' exoribonuclease family, domain 1 CH54_RS09725 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH54_RS09725 PF00013 KH domain CH54_RS09725 PF03725 3' exoribonuclease family, domain 2 CH54_RS09730 PF00312 Ribosomal protein S15 CH54_RS09735 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH54_RS09735 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH54_RS09735 PF09157 Pseudouridine synthase II TruB, C-terminal CH54_RS09740 PF02033 Ribosome-binding factor A CH54_RS09745 PF00009 Elongation factor Tu GTP binding domain CH54_RS09745 PF03144 Elongation factor Tu domain 2 CH54_RS09745 PF11987 Translation-initiation factor 2 CH54_RS09745 PF08364 Bacterial translation initiation factor IF-2 associated region CH54_RS09745 PF04760 Translation initiation factor IF-2, N-terminal region CH54_RS09750 PF00575 S1 RNA binding domain CH54_RS09750 PF08529 NusA N-terminal domain CH54_RS09750 PF13184 NusA-like KH domain CH54_RS09755 PF02576 RimP N-terminal domain CH54_RS09755 PF17384 RimP C-terminal SH3 domain CH54_RS09770 PF03840 Preprotein translocase SecG subunit CH54_RS09775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH54_RS09775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH54_RS09775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH54_RS09775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH54_RS09780 PF00809 Pterin binding enzyme CH54_RS09785 PF06480 FtsH Extracellular CH54_RS09785 PF00004 ATPase family associated with various cellular activities (AAA) CH54_RS09785 PF17862 AAA+ lid domain CH54_RS09785 PF01434 Peptidase family M41 CH54_RS09790 PF01728 FtsJ-like methyltransferase CH54_RS09795 PF01985 CRS1 / YhbY (CRM) domain CH54_RS09800 PF01272 Transcription elongation factor, GreA/GreB, C-term CH54_RS09800 PF03449 Transcription elongation factor, N-terminal CH54_RS09805 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH54_RS09810 PF00486 Transcriptional regulatory protein, C terminal CH54_RS09810 PF00072 Response regulator receiver domain CH54_RS09815 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS09815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS09815 PF00672 HAMP domain CH54_RS09820 PF01926 50S ribosome-binding GTPase CH54_RS09820 PF01018 GTP1/OBG CH54_RS09825 PF00892 EamA-like transporter family CH54_RS09830 PF01016 Ribosomal L27 protein CH54_RS09835 PF00829 Ribosomal prokaryotic L21 protein CH54_RS09840 PF00348 Polyprenyl synthetase CH54_RS09850 PF13693 Winged helix-turn-helix DNA-binding CH54_RS09855 PF00056 lactate/malate dehydrogenase, NAD binding domain CH54_RS09855 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH54_RS09860 PF02863 Arginine repressor, C-terminal domain CH54_RS09860 PF01316 Arginine repressor, DNA binding domain CH54_RS09865 PF07338 Protein of unknown function (DUF1471) CH54_RS09875 PF01225 Mur ligase family, catalytic domain CH54_RS09875 PF08245 Mur ligase middle domain CH54_RS09875 PF02875 Mur ligase family, glutamate ligase domain CH54_RS09880 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH54_RS09885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_RS09885 PF00672 HAMP domain CH54_RS09885 PF02203 Tar ligand binding domain homologue CH54_RS09890 PF00719 Inorganic pyrophosphatase CH54_RS09895 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH54_RS09900 PF04357 TamB, inner membrane protein subunit of TAM complex CH54_RS09905 PF17243 POTRA domain TamA domain 1 CH54_RS09905 PF07244 Surface antigen variable number repeat CH54_RS09905 PF01103 Surface antigen CH54_RS09910 PF01625 Peptide methionine sulfoxide reductase CH54_RS09915 PF00571 CBS domain CH54_RS09915 PF03471 Transporter associated domain CH54_RS09915 PF01595 Cyclin M transmembrane N-terminal domain CH54_RS09920 PF06526 Protein of unknown function (DUF1107) CH54_RS09925 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH54_RS09930 PF00459 Inositol monophosphatase family CH54_RS09935 PF00149 Calcineurin-like phosphoesterase CH54_RS09935 PF02872 5'-nucleotidase, C-terminal domain CH54_RS09940 PF01814 Hemerythrin HHE cation binding domain CH54_RS09940 PF04405 Domain of Unknown function (DUF542) CH54_RS09945 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH54_RS09945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH54_RS09950 PF04225 Opacity-associated protein A LysM-like domain CH54_RS09950 PF08525 Opacity-associated protein A N-terminal motif CH54_RS09960 PF01281 Ribosomal protein L9, N-terminal domain CH54_RS09960 PF03948 Ribosomal protein L9, C-terminal domain CH54_RS09965 PF01084 Ribosomal protein S18 CH54_RS09970 PF00436 Single-strand binding protein family CH54_RS09975 PF01250 Ribosomal protein S6 CH54_RS09985 PF00326 Prolyl oligopeptidase family CH54_RS09990 PF07338 Protein of unknown function (DUF1471) CH54_RS09995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH54_RS09995 PF02770 Acyl-CoA dehydrogenase, middle domain CH54_RS09995 PF18158 Adaptive response protein AidB N-terminal domain CH54_RS10000 PF00588 SpoU rRNA Methylase family CH54_RS10000 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH54_RS10005 PF00575 S1 RNA binding domain CH54_RS10005 PF08206 Ribonuclease B OB domain CH54_RS10005 PF17876 Cold shock domain CH54_RS10005 PF08461 Ribonuclease R winged-helix domain CH54_RS10005 PF00773 RNB domain CH54_RS10010 PF02082 Transcriptional regulator CH54_RS10015 PF00709 Adenylosuccinate synthetase CH54_RS10020 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH54_RS10025 PF01145 SPFH domain / Band 7 family CH54_RS10030 PF12221 Bacterial membrane protein N terminal CH54_RS10030 PF01145 SPFH domain / Band 7 family CH54_RS10035 PF16360 GTP-binding GTPase Middle Region CH54_RS10035 PF01926 50S ribosome-binding GTPase CH54_RS10035 PF13167 GTP-binding GTPase N-terminal CH54_RS10040 PF17209 Hfq protein CH54_RS10050 PF08676 MutL C terminal dimerisation domain CH54_RS10050 PF01119 DNA mismatch repair protein, C-terminal domain CH54_RS10055 PF01520 N-acetylmuramoyl-L-alanine amidase CH54_RS10060 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH54_RS10065 PF01256 Carbohydrate kinase CH54_RS10065 PF03853 YjeF-related protein N-terminus CH54_RS10070 PF08331 Domain of unknown function (DUF1730) CH54_RS10095 PF00929 Exonuclease CH54_RS10100 PF03193 RsgA GTPase CH54_RS10105 PF02666 Phosphatidylserine decarboxylase CH54_RS10110 PF00924 Mechanosensitive ion channel CH54_RS10110 PF12795 Mechanosensitive ion channel porin domain CH54_RS10110 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH54_RS10115 PF00152 tRNA synthetases class II (D, K and N) CH54_RS10120 PF02910 Fumarate reductase flavoprotein C-term CH54_RS10120 PF00890 FAD binding domain CH54_RS10125 PF13085 2Fe-2S iron-sulfur cluster binding domain CH54_RS10125 PF13183 4Fe-4S dicluster domain CH54_RS10130 PF02300 Fumarate reductase subunit C CH54_RS10135 PF02313 Fumarate reductase subunit D CH54_RS10140 PF08212 Lipocalin-like domain CH54_RS10145 PF00893 Small Multidrug Resistance protein CH54_RS10150 PF08085 Entericidin EcnA/B family CH54_RS10155 PF01132 Elongation factor P (EF-P) OB domain CH54_RS10155 PF08207 Elongation factor P (EF-P) KOW-like domain CH54_RS10155 PF09285 Elongation factor P, C-terminal CH54_RS10160 PF04055 Radical SAM superfamily CH54_RS10165 PF13698 Domain of unknown function (DUF4156) CH54_RS10170 PF00118 TCP-1/cpn60 chaperonin family CH54_RS10175 PF00166 Chaperonin 10 Kd subunit CH54_RS10180 PF04186 FxsA cytoplasmic membrane protein CH54_RS10185 PF00206 Lyase CH54_RS10185 PF10415 Fumarase C C-terminus CH54_RS10190 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH54_RS10195 PF03091 CutA1 divalent ion tolerance protein CH54_RS10200 PF11412 Disulphide bond corrector protein DsbC CH54_RS10200 PF02683 Cytochrome C biogenesis protein transmembrane region CH54_RS10205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS10205 PF01568 Molydopterin dinucleotide binding domain CH54_RS10205 PF00384 Molybdopterin oxidoreductase CH54_RS10210 PF12800 4Fe-4S binding domain CH54_RS10210 PF13247 4Fe-4S dicluster domain CH54_RS10215 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH54_RS10215 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_RS10215 PF13247 4Fe-4S dicluster domain CH54_RS10220 PF07690 Major Facilitator Superfamily CH54_RS10225 PF08666 SAF domain CH54_RS10225 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH54_RS10230 PF13556 PucR C-terminal helix-turn-helix domain CH54_RS10230 PF17853 GGDEF-like domain CH54_RS10230 PF05651 Putative sugar diacid recognition CH54_RS10235 PF02595 Glycerate kinase family CH54_RS10240 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH54_RS10240 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH54_RS10245 PF03328 HpcH/HpaI aldolase/citrate lyase family CH54_RS10260 PF00589 Phage integrase family CH54_RS10280 PF13936 Helix-turn-helix domain CH54_RS10280 PF00665 Integrase core domain CH54_RS10290 PF13361 UvrD-like helicase C-terminal domain CH54_RS10290 PF00580 UvrD/REP helicase N-terminal domain CH54_RS10295 PF13476 AAA domain CH54_RS10305 PF01223 DNA/RNA non-specific endonuclease CH54_RS10310 PF06755 CbtA_toxin of type IV toxin-antitoxin system CH54_RS10370 PF05973 Phage derived protein Gp49-like (DUF891) CH54_RS10375 PF00665 Integrase core domain CH54_RS10380 PF01527 Transposase CH54_RS10575 PF00665 Integrase core domain CH54_RS10580 PF01527 Transposase CH54_RS10620 PF00772 DnaB-like helicase N terminal domain CH54_RS10620 PF03796 DnaB-like helicase C terminal domain CH54_RS10625 PF13614 AAA domain CH54_RS10630 PF10636 Hemin uptake protein hemP CH54_RS10635 PF00593 TonB dependent receptor CH54_RS10635 PF07715 TonB-dependent Receptor Plug Domain CH54_RS10640 PF05171 Haemin-degrading HemS.ChuX domain CH54_RS10645 PF01497 Periplasmic binding protein CH54_RS10650 PF01032 FecCD transport family CH54_RS10655 PF00005 ABC transporter CH54_RS10660 PF00155 Aminotransferase class I and II CH54_RS10660 PF00392 Bacterial regulatory proteins, gntR family CH54_RS10670 PF00593 TonB dependent receptor CH54_RS10670 PF07715 TonB-dependent Receptor Plug Domain CH54_RS10675 PF12795 Mechanosensitive ion channel porin domain CH54_RS10675 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH54_RS10675 PF00924 Mechanosensitive ion channel CH54_RS10680 PF01206 Sulfurtransferase TusA CH54_RS10685 PF04143 Sulphur transport CH54_RS10690 PF01312 FlhB HrpN YscU SpaS Family CH54_RS10695 PF01311 Bacterial export proteins, family 1 CH54_RS10700 PF01313 Bacterial export proteins, family 3 CH54_RS10705 PF00813 FliP family CH54_RS10710 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH54_RS10725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_RS10725 PF18269 T3SS EscN ATPase C-terminal domain CH54_RS10730 PF00771 FHIPEP family CH54_RS10740 PF07201 HrpJ-like domain CH54_RS10755 PF01514 Secretory protein of YscJ/FliF family CH54_RS10775 PF12833 Helix-turn-helix domain CH54_RS10775 PF14525 AraC-binding-like domain CH54_RS10800 PF04888 Secretion system effector C (SseC) like family CH54_RS10810 PF03433 EspA-like secreted protein CH54_RS10830 PF00263 Bacterial type II and III secretion system protein CH54_RS10830 PF03958 Bacterial type II/III secretion system short domain CH54_RS10840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH54_RS10840 PF00672 HAMP domain CH54_RS10840 PF00072 Response regulator receiver domain CH54_RS10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS10840 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS10840 PF01627 Hpt domain CH54_RS10845 PF00196 Bacterial regulatory proteins, luxR family CH54_RS10845 PF00072 Response regulator receiver domain CH54_RS10850 PF00375 Sodium:dicarboxylate symporter family CH54_RS10855 PF13193 AMP-binding enzyme C-terminal domain CH54_RS10855 PF16177 Acetyl-coenzyme A synthetase N-terminus CH54_RS10855 PF00501 AMP-binding enzyme CH54_RS10860 PF04341 Protein of unknown function, DUF485 CH54_RS10865 PF00474 Sodium:solute symporter family CH54_RS10895 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_RS10900 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH54_RS10900 PF08501 Shikimate dehydrogenase substrate binding domain CH54_RS10900 PF01488 Shikimate / quinate 5-dehydrogenase CH54_RS10905 PF01300 Telomere recombination CH54_RS10910 PF01396 Topoisomerase DNA binding C4 zinc finger CH54_RS10915 PF04361 Protein of unknown function (DUF494) CH54_RS10920 PF17782 DprA winged helix domain CH54_RS10920 PF02481 DNA recombination-mediator protein A CH54_RS10925 PF01327 Polypeptide deformylase CH54_RS10930 PF02911 Formyl transferase, C-terminal domain CH54_RS10930 PF00551 Formyl transferase CH54_RS10935 PF01189 16S rRNA methyltransferase RsmB/F CH54_RS10935 PF01029 NusB family CH54_RS10940 PF02254 TrkA-N domain CH54_RS10940 PF02080 TrkA-C domain CH54_RS10945 PF01741 Large-conductance mechanosensitive channel, MscL CH54_RS10950 PF03889 Alternative ribosome-rescue factor A CH54_RS10955 PF13411 MerR HTH family regulatory protein CH54_RS10960 PF09350 Domain of unknown function (DUF1992) CH54_RS10965 PF01196 Ribosomal protein L17 CH54_RS10970 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH54_RS10970 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH54_RS10970 PF01000 RNA polymerase Rpb3/RpoA insert domain CH54_RS10975 PF00163 Ribosomal protein S4/S9 N-terminal domain CH54_RS10975 PF01479 S4 domain CH54_RS10980 PF00411 Ribosomal protein S11 CH54_RS10985 PF00416 Ribosomal protein S13/S18 CH54_RS10990 PF00444 Ribosomal protein L36 CH54_RS10995 PF00344 SecY translocase CH54_RS11000 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH54_RS11005 PF00327 Ribosomal protein L30p/L7e CH54_RS11010 PF00333 Ribosomal protein S5, N-terminal domain CH54_RS11010 PF03719 Ribosomal protein S5, C-terminal domain CH54_RS11015 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH54_RS11020 PF00347 Ribosomal protein L6 CH54_RS11025 PF00410 Ribosomal protein S8 CH54_RS11030 PF00253 Ribosomal protein S14p/S29e CH54_RS11035 PF00673 ribosomal L5P family C-terminus CH54_RS11035 PF00281 Ribosomal protein L5 CH54_RS11040 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH54_RS11040 PF00467 KOW motif CH54_RS11045 PF00238 Ribosomal protein L14p/L23e CH54_RS11050 PF00366 Ribosomal protein S17 CH54_RS11055 PF00831 Ribosomal L29 protein CH54_RS11060 PF00252 Ribosomal protein L16p/L10e CH54_RS11065 PF00189 Ribosomal protein S3, C-terminal domain CH54_RS11065 PF07650 KH domain CH54_RS11070 PF00237 Ribosomal protein L22p/L17e CH54_RS11075 PF00203 Ribosomal protein S19 CH54_RS11080 PF00181 Ribosomal Proteins L2, RNA binding domain CH54_RS11080 PF03947 Ribosomal Proteins L2, C-terminal domain CH54_RS11085 PF00276 Ribosomal protein L23 CH54_RS11090 PF00573 Ribosomal protein L4/L1 family CH54_RS11095 PF00297 Ribosomal protein L3 CH54_RS11100 PF00338 Ribosomal protein S10p/S20e CH54_RS11105 PF00210 Ferritin-like domain CH54_RS11110 PF04324 BFD-like [2Fe-2S] binding domain CH54_RS11115 PF03144 Elongation factor Tu domain 2 CH54_RS11115 PF03143 Elongation factor Tu C-terminal domain CH54_RS11115 PF00009 Elongation factor Tu GTP binding domain CH54_RS11120 PF03144 Elongation factor Tu domain 2 CH54_RS11120 PF00009 Elongation factor Tu GTP binding domain CH54_RS11120 PF03764 Elongation factor G, domain IV CH54_RS11120 PF14492 Elongation Factor G, domain II CH54_RS11120 PF00679 Elongation factor G C-terminus CH54_RS11125 PF00177 Ribosomal protein S7p/S5e CH54_RS11130 PF00164 Ribosomal protein S12/S23 CH54_RS11135 PF04077 DsrH like protein CH54_RS11140 PF02635 DsrE/DsrF-like family CH54_RS11145 PF02635 DsrE/DsrF-like family CH54_RS11150 PF08348 YheO-like PAS domain CH54_RS11150 PF13309 HTH domain CH54_RS11155 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH54_RS11155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH54_RS11160 PF04102 SlyX CH54_RS11165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH54_RS11170 PF09526 Probable metal-binding protein (DUF2387) CH54_RS11175 PF00999 Sodium/hydrogen exchanger family CH54_RS11175 PF02254 TrkA-N domain CH54_RS11180 PF02525 Flavodoxin-like fold CH54_RS11185 PF12848 ABC transporter CH54_RS11185 PF00005 ABC transporter CH54_RS11200 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH54_RS11205 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS11210 PF00005 ABC transporter CH54_RS11215 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH54_RS11220 PF02567 Phenazine biosynthesis-like protein CH54_RS11225 PF01810 LysE type translocator CH54_RS11230 PF00561 alpha/beta hydrolase fold CH54_RS11235 PF06794 Uncharacterised protein family (UPF0270) CH54_RS11240 PF00485 Phosphoribulokinase / Uridine kinase family CH54_RS11245 PF02566 OsmC-like protein CH54_RS11250 PF13545 Crp-like helix-turn-helix domain CH54_RS11250 PF00027 Cyclic nucleotide-binding domain CH54_RS11255 PF12805 FUSC-like inner membrane protein yccS CH54_RS11260 PF00202 Aminotransferase class-III CH54_RS11265 PF00117 Glutamine amidotransferase class-I CH54_RS11275 PF05872 Bacterial protein of unknown function (DUF853) CH54_RS11280 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH54_RS11285 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH54_RS11285 PF02056 Family 4 glycosyl hydrolase CH54_RS11290 PF00356 Bacterial regulatory proteins, lacI family CH54_RS11295 PF07690 Major Facilitator Superfamily CH54_RS11300 PF07969 Amidohydrolase family CH54_RS11305 PF04324 BFD-like [2Fe-2S] binding domain CH54_RS11305 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH54_RS11305 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH54_RS11305 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH54_RS11305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_RS11310 PF13806 Rieske-like [2Fe-2S] domain CH54_RS11315 PF01226 Formate/nitrite transporter CH54_RS11320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_RS11320 PF10414 Sirohaem synthase dimerisation region CH54_RS11320 PF14824 Sirohaem biosynthesis protein central CH54_RS11325 PF00579 tRNA synthetases class I (W and Y) CH54_RS11330 PF13419 Haloacid dehalogenase-like hydrolase CH54_RS11335 PF00834 Ribulose-phosphate 3 epimerase family CH54_RS11340 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH54_RS11345 PF05036 Sporulation related domain CH54_RS11350 PF01761 3-dehydroquinate synthase CH54_RS11355 PF01202 Shikimate kinase CH54_RS11360 PF03958 Bacterial type II/III secretion system short domain CH54_RS11360 PF00263 Bacterial type II and III secretion system protein CH54_RS11385 PF00912 Transglycosylase CH54_RS11385 PF00905 Penicillin binding protein transpeptidase domain CH54_RS11385 PF17092 Penicillin-binding protein OB-like domain CH54_RS11390 PF00293 NUDIX domain CH54_RS11395 PF07095 Intracellular growth attenuator protein IgaA CH54_RS11400 PF13419 Haloacid dehalogenase-like hydrolase CH54_RS11405 PF01479 S4 domain CH54_RS11410 PF01430 Hsp33 protein CH54_RS11415 PF01293 Phosphoenolpyruvate carboxykinase CH54_RS11420 PF00672 HAMP domain CH54_RS11420 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS11420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS11425 PF00072 Response regulator receiver domain CH54_RS11425 PF00486 Transcriptional regulatory protein, C terminal CH54_RS11430 PF01272 Transcription elongation factor, GreA/GreB, C-term CH54_RS11430 PF03449 Transcription elongation factor, N-terminal CH54_RS11455 PF16921 Tex protein YqgF-like domain CH54_RS11455 PF09371 Tex-like protein N-terminal domain CH54_RS11455 PF00575 S1 RNA binding domain CH54_RS11455 PF17674 HHH domain CH54_RS11460 PF04023 FeoA domain CH54_RS11465 PF07664 Ferrous iron transport protein B C terminus CH54_RS11465 PF02421 Ferrous iron transport protein B CH54_RS11465 PF17910 FeoB cytosolic helical domain CH54_RS11465 PF07670 Nucleoside recognition CH54_RS11470 PF09012 FeoC like transcriptional regulator CH54_RS11475 PF07338 Protein of unknown function (DUF1471) CH54_RS11480 PF00561 alpha/beta hydrolase fold CH54_RS11485 PF00156 Phosphoribosyl transferase domain CH54_RS11490 PF01521 Iron-sulphur cluster biosynthesis CH54_RS11490 PF01106 NifU-like domain CH54_RS11495 PF02446 4-alpha-glucanotransferase CH54_RS11500 PF00343 Carbohydrate phosphorylase CH54_RS11505 PF17874 MalT-like TPR region CH54_RS11505 PF00196 Bacterial regulatory proteins, luxR family CH54_RS11510 PF00581 Rhodanese-like domain CH54_RS11515 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH54_RS11515 PF01694 Rhomboid family CH54_RS11520 PF00455 DeoR C terminal sensor domain CH54_RS11520 PF08220 DeoR-like helix-turn-helix domain CH54_RS11530 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH54_RS11530 PF01266 FAD dependent oxidoreductase CH54_RS11535 PF00343 Carbohydrate phosphorylase CH54_RS11540 PF00534 Glycosyl transferases group 1 CH54_RS11540 PF08323 Starch synthase catalytic domain CH54_RS11545 PF00483 Nucleotidyl transferase CH54_RS11550 PF00128 Alpha amylase, catalytic domain CH54_RS11550 PF18390 Glycogen debranching enzyme C-terminal domain CH54_RS11550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH54_RS11555 PF02806 Alpha amylase, C-terminal all-beta domain CH54_RS11555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH54_RS11555 PF00128 Alpha amylase, catalytic domain CH54_RS11560 PF07694 5TMR of 5TMR-LYT CH54_RS11560 PF06580 Histidine kinase CH54_RS11565 PF03412 Peptidase C39 family CH54_RS11565 PF00664 ABC transporter transmembrane region CH54_RS11565 PF00005 ABC transporter CH54_RS11570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_RS11570 PF00529 HlyD membrane-fusion protein of T1SS CH54_RS11585 PF00535 Glycosyl transferase family 2 CH54_RS11600 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH54_RS11600 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH54_RS11605 PF01914 MarC family integral membrane protein CH54_RS11610 PF01202 Shikimate kinase CH54_RS11615 PF02447 GntP family permease CH54_RS11620 PF00356 Bacterial regulatory proteins, lacI family CH54_RS11620 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH54_RS11625 PF02678 Pirin CH54_RS11625 PF17954 Quercetinase C-terminal cupin domain CH54_RS11630 PF00583 Acetyltransferase (GNAT) family CH54_RS11635 PF01261 Xylose isomerase-like TIM barrel CH54_RS11640 PF01261 Xylose isomerase-like TIM barrel CH54_RS11645 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH54_RS11645 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH54_RS11650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_RS11650 PF00205 Thiamine pyrophosphate enzyme, central domain CH54_RS11650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_RS11655 PF00294 pfkB family carbohydrate kinase CH54_RS11665 PF04962 KduI/IolB family CH54_RS11670 PF00171 Aldehyde dehydrogenase family CH54_RS11690 PF16970 Type-1 fimbrial protein, A CH54_RS11695 PF00577 Outer membrane usher protein CH54_RS11695 PF13953 PapC C-terminal domain CH54_RS11695 PF13954 PapC N-terminal domain CH54_RS11700 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_RS11700 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_RS11730 PF01384 Phosphate transporter family CH54_RS11735 PF10625 Universal stress protein B (UspB) CH54_RS11740 PF00582 Universal stress protein family CH54_RS11745 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH54_RS11745 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH54_RS11750 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH54_RS11750 PF00413 Matrixin CH54_RS11750 PF08548 Peptidase M10 serralysin C terminal CH54_RS11755 PF04445 Putative SAM-dependent methyltransferase CH54_RS11760 PF01432 Peptidase family M3 CH54_RS11765 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH54_RS11770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH54_RS11770 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_RS11780 PF02611 CDP-diacylglycerol pyrophosphatase CH54_RS11785 PF05170 AsmA family CH54_RS11790 PF00563 EAL domain CH54_RS11795 PF01361 Tautomerase enzyme CH54_RS11800 PF00294 pfkB family carbohydrate kinase CH54_RS11805 PF00675 Insulinase (Peptidase family M16) CH54_RS11805 PF05193 Peptidase M16 inactive domain CH54_RS11810 PF00375 Sodium:dicarboxylate symporter family CH54_RS11815 PF06917 Periplasmic pectate lyase CH54_RS11820 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH54_RS11825 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS11825 PF17154 Gammaproteobacterial periplasmic sensor domain CH54_RS11825 PF00672 HAMP domain CH54_RS11825 PF00563 EAL domain CH54_RS11830 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CH54_RS11835 PF01270 Glycosyl hydrolases family 8 CH54_RS11840 PF03170 Bacterial cellulose synthase subunit CH54_RS11845 PF03552 Cellulose synthase CH54_RS11845 PF07238 PilZ domain CH54_RS11845 PF00535 Glycosyl transferase family 2 CH54_RS11850 PF06564 Cellulose biosynthesis protein BcsQ CH54_RS11860 PF10995 Cellulose biosynthesis GIL CH54_RS11865 PF11120 Cellulose biosynthesis protein BcsF CH54_RS11870 PF11658 Cellulose biosynthesis protein BcsG CH54_RS11875 PF00005 ABC transporter CH54_RS11875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_RS11880 PF00005 ABC transporter CH54_RS11880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_RS11885 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_RS11885 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS11890 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS11895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_RS11900 PF05860 haemagglutination activity domain CH54_RS11900 PF13332 Hemagglutinin repeat CH54_RS11900 PF13018 Extended Signal Peptide of Type V secretion system CH54_RS11900 PF04829 Pre-toxin domain with VENN motif CH54_RS11905 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH54_RS11905 PF08479 POTRA domain, ShlB-type CH54_RS11905 PF17287 POTRA domain CH54_RS11910 PF13332 Hemagglutinin repeat CH54_RS11910 PF02661 Fic/DOC family CH54_RS11910 PF05860 haemagglutination activity domain CH54_RS11910 PF03543 Yersinia/Haemophilus virulence surface antigen CH54_RS11910 PF13018 Extended Signal Peptide of Type V secretion system CH54_RS11920 PF07690 Major Facilitator Superfamily CH54_RS11925 PF05231 MASE1 CH54_RS11925 PF07730 Histidine kinase CH54_RS11925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS11930 PF00196 Bacterial regulatory proteins, luxR family CH54_RS11930 PF00072 Response regulator receiver domain CH54_RS11935 PF08019 Phosphoethanolamine transferase EptA/EptB CH54_RS11935 PF00884 Sulfatase CH54_RS11940 PF02566 OsmC-like protein CH54_RS11945 PF12146 Serine aminopeptidase, S33 CH54_RS11955 PF00324 Amino acid permease CH54_RS11960 PF00221 Aromatic amino acid lyase CH54_RS11965 PF17391 Urocanase N-terminal domain CH54_RS11965 PF17392 Urocanase C-terminal domain CH54_RS11965 PF01175 Urocanase Rossmann-like domain CH54_RS11990 PF00072 Response regulator receiver domain CH54_RS11990 PF01627 Hpt domain CH54_RS11990 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS11990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS11990 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS11990 PF00989 PAS fold CH54_RS11995 PF12833 Helix-turn-helix domain CH54_RS12000 PF02653 Branched-chain amino acid transport system / permease component CH54_RS12005 PF00005 ABC transporter CH54_RS12010 PF13407 Periplasmic binding protein domain CH54_RS12020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH54_RS12020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH54_RS12025 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_RS12025 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_RS12030 PF00857 Isochorismatase family CH54_RS12035 PF12833 Helix-turn-helix domain CH54_RS12035 PF01965 DJ-1/PfpI family CH54_RS12040 PF01757 Acyltransferase family CH54_RS12045 PF07690 Major Facilitator Superfamily CH54_RS12050 PF07804 HipA-like C-terminal domain CH54_RS12050 PF13657 HipA N-terminal domain CH54_RS12060 PF03144 Elongation factor Tu domain 2 CH54_RS12060 PF09107 Elongation factor SelB, winged helix CH54_RS12060 PF00009 Elongation factor Tu GTP binding domain CH54_RS12060 PF09106 Elongation factor SelB, winged helix CH54_RS12065 PF03841 L-seryl-tRNA selenium transferase CH54_RS12065 PF12390 Selenocysteine synthase N terminal CH54_RS12070 PF04216 Protein involved in formate dehydrogenase formation CH54_RS12075 PF01292 Prokaryotic cytochrome b561 CH54_RS12080 PF13247 4Fe-4S dicluster domain CH54_RS12080 PF09163 Formate dehydrogenase N, transmembrane CH54_RS12085 PF01568 Molydopterin dinucleotide binding domain CH54_RS12085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS12085 PF00384 Molybdopterin oxidoreductase CH54_RS12090 PF01568 Molydopterin dinucleotide binding domain CH54_RS12090 PF00384 Molybdopterin oxidoreductase CH54_RS12090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS12095 PF02634 FdhD/NarQ family CH54_RS12100 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH54_RS12100 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH54_RS12105 PF02203 Tar ligand binding domain homologue CH54_RS12105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_RS12105 PF00672 HAMP domain CH54_RS12115 PF10928 Protein of unknown function (DUF2810) CH54_RS12120 PF00155 Aminotransferase class I and II CH54_RS12120 PF00392 Bacterial regulatory proteins, gntR family CH54_RS12130 PF05068 Mannitol repressor CH54_RS12135 PF08125 Mannitol dehydrogenase C-terminal domain CH54_RS12135 PF01232 Mannitol dehydrogenase Rossmann domain CH54_RS12140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH54_RS12140 PF02378 Phosphotransferase system, EIIC CH54_RS12140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH54_RS12145 PF11254 Protein of unknown function (DUF3053) CH54_RS12150 PF05746 DALR anticodon binding domain CH54_RS12150 PF02092 Glycyl-tRNA synthetase beta subunit CH54_RS12155 PF02091 Glycyl-tRNA synthetase alpha subunit CH54_RS12160 PF03352 Methyladenine glycosylase CH54_RS12165 PF00583 Acetyltransferase (GNAT) family CH54_RS12185 PF07690 Major Facilitator Superfamily CH54_RS12190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_RS12190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH54_RS12195 PF00128 Alpha amylase, catalytic domain CH54_RS12200 PF00155 Aminotransferase class I and II CH54_RS12205 PF02080 TrkA-C domain CH54_RS12205 PF06826 Predicted Permease Membrane Region CH54_RS12210 PF00011 Hsp20/alpha crystallin family CH54_RS12215 PF00011 Hsp20/alpha crystallin family CH54_RS12220 PF07119 Protein of unknown function (DUF1375) CH54_RS12225 PF12566 Protein of unknown function (DUF3748) CH54_RS12225 PF07676 WD40-like Beta Propeller Repeat CH54_RS12230 PF13309 HTH domain CH54_RS12230 PF08348 YheO-like PAS domain CH54_RS12235 PF00291 Pyridoxal-phosphate dependent enzyme CH54_RS12240 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH54_RS12250 PF00986 DNA gyrase B subunit, carboxyl terminus CH54_RS12250 PF00204 DNA gyrase B CH54_RS12250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS12250 PF01751 Toprim domain CH54_RS12250 PF18053 DNA gyrase B subunit insert domain CH54_RS12255 PF02463 RecF/RecN/SMC N terminal domain CH54_RS12260 PF02768 DNA polymerase III beta subunit, C-terminal domain CH54_RS12260 PF00712 DNA polymerase III beta subunit, N-terminal domain CH54_RS12260 PF02767 DNA polymerase III beta subunit, central domain CH54_RS12265 PF08299 Bacterial dnaA protein helix-turn-helix CH54_RS12265 PF00308 Bacterial dnaA protein CH54_RS12265 PF11638 DnaA N-terminal domain CH54_RS12270 PF00468 Ribosomal protein L34 CH54_RS12275 PF00825 Ribonuclease P CH54_RS12280 PF14849 YidC periplasmic domain CH54_RS12280 PF02096 60Kd inner membrane protein CH54_RS12285 PF01926 50S ribosome-binding GTPase CH54_RS12285 PF10396 GTP-binding protein TrmE N-terminus CH54_RS12285 PF12631 MnmE helical domain CH54_RS12290 PF07055 Enoyl reductase FAD binding domain CH54_RS12290 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH54_RS12290 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH54_RS12300 PF09383 NIL domain CH54_RS12300 PF00005 ABC transporter CH54_RS12305 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS12310 PF00672 HAMP domain CH54_RS12310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_RS12310 PF02203 Tar ligand binding domain homologue CH54_RS12315 PF03358 NADPH-dependent FMN reductase CH54_RS12320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS12320 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS12320 PF00989 PAS fold CH54_RS12325 PF00196 Bacterial regulatory proteins, luxR family CH54_RS12325 PF00072 Response regulator receiver domain CH54_RS12335 PF00860 Permease family CH54_RS12340 PF13419 Haloacid dehalogenase-like hydrolase CH54_RS12345 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS12350 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS12355 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS12365 PF01895 PhoU domain CH54_RS12370 PF00005 ABC transporter CH54_RS12375 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS12380 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS12385 PF12849 PBP superfamily domain CH54_RS12390 PF00916 Sulfate permease family CH54_RS12390 PF01740 STAS domain CH54_RS12395 PF01380 SIS domain CH54_RS12400 PF12804 MobA-like NTP transferase domain CH54_RS12400 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_RS12405 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH54_RS12405 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH54_RS12410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_RS12410 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH54_RS12415 PF00231 ATP synthase CH54_RS12420 PF00306 ATP synthase alpha/beta chain, C terminal domain CH54_RS12420 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH54_RS12420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_RS12425 PF00213 ATP synthase delta (OSCP) subunit CH54_RS12430 PF00430 ATP synthase B/B' CF(0) CH54_RS12435 PF00137 ATP synthase subunit C CH54_RS12440 PF00119 ATP synthase A chain CH54_RS12445 PF03899 ATP synthase I chain CH54_RS12450 PF02527 rRNA small subunit methyltransferase G CH54_RS12455 PF13932 GidA associated domain CH54_RS12455 PF01134 Glucose inhibited division protein A CH54_RS12460 PF00258 Flavodoxin CH54_RS12465 PF01037 Lrp/AsnC ligand binding domain CH54_RS12470 PF03590 Aspartate-ammonia ligase CH54_RS12480 PF05762 VWA domain containing CoxE-like protein CH54_RS12485 PF17868 AAA lid domain CH54_RS12485 PF12592 Protein of unknown function (DUF3763) CH54_RS12485 PF07728 AAA domain (dynein-related subfamily) CH54_RS12490 PF02705 K+ potassium transporter CH54_RS12495 PF05025 RbsD / FucU transport protein family CH54_RS12500 PF00005 ABC transporter CH54_RS12505 PF02653 Branched-chain amino acid transport system / permease component CH54_RS12510 PF13407 Periplasmic binding protein domain CH54_RS12515 PF00294 pfkB family carbohydrate kinase CH54_RS12520 PF00356 Bacterial regulatory proteins, lacI family CH54_RS12525 PF07690 Major Facilitator Superfamily CH54_RS12530 PF07729 FCD domain CH54_RS12530 PF00392 Bacterial regulatory proteins, gntR family CH54_RS12555 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH54_RS12560 PF12804 MobA-like NTP transferase domain CH54_RS12565 PF06288 Protein of unknown function (DUF1040) CH54_RS12570 PF01636 Phosphotransferase enzyme family CH54_RS12575 PF01323 DSBA-like thioredoxin domain CH54_RS12580 PF01612 3'-5' exonuclease CH54_RS12580 PF00476 DNA polymerase family A CH54_RS12580 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH54_RS12580 PF01367 5'-3' exonuclease, C-terminal SAM fold CH54_RS12585 PF01926 50S ribosome-binding GTPase CH54_RS12590 PF04220 Der GTPase activator (YihI) CH54_RS12595 PF04055 Radical SAM superfamily CH54_RS12595 PF06969 HemN C-terminal domain CH54_RS12600 PF00158 Sigma-54 interaction domain CH54_RS12600 PF00072 Response regulator receiver domain CH54_RS12600 PF02954 Bacterial regulatory protein, Fis family CH54_RS12605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS12605 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS12605 PF00989 PAS fold CH54_RS12610 PF03951 Glutamine synthetase, beta-Grasp domain CH54_RS12610 PF00120 Glutamine synthetase, catalytic domain CH54_RS12615 PF00679 Elongation factor G C-terminus CH54_RS12615 PF00009 Elongation factor Tu GTP binding domain CH54_RS12615 PF03144 Elongation factor Tu domain 2 CH54_RS12620 PF13419 Haloacid dehalogenase-like hydrolase CH54_RS12625 PF03631 Virulence factor BrkB CH54_RS12630 PF02580 D-Tyr-tRNA(Tyr) deacylase CH54_RS12635 PF00583 Acetyltransferase (GNAT) family CH54_RS12635 PF09500 Putative thioesterase (yiiD_Cterm) CH54_RS12640 PF13693 Winged helix-turn-helix DNA-binding CH54_RS12645 PF00196 Bacterial regulatory proteins, luxR family CH54_RS12645 PF00072 Response regulator receiver domain CH54_RS12655 PF05170 AsmA family CH54_RS12660 PF00860 Permease family CH54_RS12665 PF03616 Sodium/glutamate symporter CH54_RS12670 PF00271 Helicase conserved C-terminal domain CH54_RS12670 PF00270 DEAD/DEAH box helicase CH54_RS12670 PF17191 RecG wedge domain CH54_RS12675 PF00588 SpoU rRNA Methylase family CH54_RS12675 PF12105 SpoU, rRNA methylase, C-terminal CH54_RS12680 PF04607 Region found in RelA / SpoT proteins CH54_RS12680 PF02824 TGS domain CH54_RS12680 PF13291 ACT domain CH54_RS12685 PF01192 RNA polymerase Rpb6 CH54_RS12690 PF00625 Guanylate kinase CH54_RS12695 PF01653 NAD-dependent DNA ligase adenylation domain CH54_RS12695 PF03120 NAD-dependent DNA ligase OB-fold domain CH54_RS12700 PF03458 UPF0126 domain CH54_RS12710 PF00378 Enoyl-CoA hydratase/isomerase CH54_RS12715 PF00563 EAL domain CH54_RS12715 PF13426 PAS domain CH54_RS12715 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS12740 PF03755 YicC-like family, N-terminal region CH54_RS12740 PF08340 Domain of unknown function (DUF1732) CH54_RS12745 PF03725 3' exoribonuclease family, domain 2 CH54_RS12745 PF01138 3' exoribonuclease family, domain 1 CH54_RS12755 PF04606 Ogr/Delta-like zinc finger CH54_RS12790 PF17482 Phage tail sheath C-terminal domain CH54_RS12790 PF04984 Phage tail sheath protein subtilisin-like domain CH54_RS12915 PF05840 Bacteriophage replication gene A protein (GPA) CH54_RS12930 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH54_RS12935 PF00929 Exonuclease CH54_RS12975 PF02899 Phage integrase, N-terminal SAM-like domain CH54_RS12975 PF00589 Phage integrase family CH54_RS12980 PF00156 Phosphoribosyl transferase domain CH54_RS12985 PF00440 Bacterial regulatory proteins, tetR family CH54_RS12990 PF00692 dUTPase CH54_RS12995 PF04127 DNA / pantothenate metabolism flavoprotein CH54_RS12995 PF02441 Flavoprotein CH54_RS13000 PF04002 RadC-like JAB domain CH54_RS13005 PF00830 Ribosomal L28 family CH54_RS13010 PF00471 Ribosomal protein L33 CH54_RS13015 PF06827 Zinc finger found in FPG and IleRS CH54_RS13015 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH54_RS13015 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH54_RS13020 PF01467 Cytidylyltransferase-like CH54_RS13025 PF00535 Glycosyl transferase family 2 CH54_RS13030 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH54_RS13035 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH54_RS13040 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH54_RS13045 PF01370 NAD dependent epimerase/dehydratase family CH54_RS13050 PF00155 Aminotransferase class I and II CH54_RS13055 PF00107 Zinc-binding dehydrogenase CH54_RS13055 PF08240 Alcohol dehydrogenase GroES-like domain CH54_RS13065 PF04748 Divergent polysaccharide deacetylase CH54_RS13070 PF01551 Peptidase family M23 CH54_RS13075 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH54_RS13075 PF01676 Metalloenzyme superfamily CH54_RS13080 PF00581 Rhodanese-like domain CH54_RS13085 PF00462 Glutaredoxin CH54_RS13090 PF02556 Preprotein translocase subunit SecB CH54_RS13095 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH54_RS13095 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH54_RS13100 PF06426 Serine acetyltransferase, N-terminal CH54_RS13100 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_RS13105 PF00588 SpoU rRNA Methylase family CH54_RS13110 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH54_RS13110 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH54_RS13110 PF02805 Metal binding domain of Ada CH54_RS13110 PF12833 Helix-turn-helix domain CH54_RS13115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS13115 PF00672 HAMP domain CH54_RS13115 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS13115 PF16527 Two-component sensor protein CpxA, periplasmic domain CH54_RS13120 PF00486 Transcriptional regulatory protein, C terminal CH54_RS13120 PF00072 Response regulator receiver domain CH54_RS13125 PF07813 LTXXQ motif family protein CH54_RS13130 PF16916 Dimerisation domain of Zinc Transporter CH54_RS13130 PF01545 Cation efflux family CH54_RS13135 PF00365 Phosphofructokinase CH54_RS13150 PF00121 Triosephosphate isomerase CH54_RS13155 PF07305 Protein of unknown function (DUF1454) CH54_RS13160 PF05656 Protein of unknown function (DUF805) CH54_RS13165 PF00175 Oxidoreductase NAD-binding domain CH54_RS13165 PF00970 Oxidoreductase FAD-binding domain CH54_RS13170 PF07690 Major Facilitator Superfamily CH54_RS13175 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH54_RS13180 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH54_RS13180 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH54_RS13185 PF00230 Major intrinsic protein CH54_RS13190 PF06005 Cell division protein ZapB CH54_RS13195 PF03737 Aldolase/RraA CH54_RS13200 PF01040 UbiA prenyltransferase family CH54_RS13205 PF07724 AAA domain (Cdc48 subfamily) CH54_RS13205 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_RS13205 PF00004 ATPase family associated with various cellular activities (AAA) CH54_RS13210 PF00227 Proteasome subunit CH54_RS13215 PF05036 Sporulation related domain CH54_RS13220 PF00356 Bacterial regulatory proteins, lacI family CH54_RS13225 PF00271 Helicase conserved C-terminal domain CH54_RS13225 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH54_RS13225 PF18074 Primosomal protein N C-terminal domain CH54_RS13225 PF17764 3′ DNA-binding domain (3′BD) CH54_RS13225 PF00270 DEAD/DEAH box helicase CH54_RS13230 PF01197 Ribosomal protein L31 CH54_RS13235 PF01340 Met Apo-repressor, MetJ CH54_RS13240 PF01053 Cys/Met metabolism PLP-dependent enzyme CH54_RS13245 PF03447 Homoserine dehydrogenase, NAD binding domain CH54_RS13245 PF00742 Homoserine dehydrogenase CH54_RS13245 PF00696 Amino acid kinase family CH54_RS13250 PF02219 Methylenetetrahydrofolate reductase CH54_RS13255 PF00311 Phosphoenolpyruvate carboxylase CH54_RS13260 PF01546 Peptidase family M20/M25/M40 CH54_RS13260 PF07687 Peptidase dimerisation domain CH54_RS13265 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH54_RS13265 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH54_RS13270 PF00696 Amino acid kinase family CH54_RS13275 PF14698 Argininosuccinate lyase C-terminal CH54_RS13275 PF00206 Lyase CH54_RS13280 PF00593 TonB dependent receptor CH54_RS13280 PF07715 TonB-dependent Receptor Plug Domain CH54_RS13305 PF00664 ABC transporter transmembrane region CH54_RS13305 PF00005 ABC transporter CH54_RS13310 PF00529 HlyD membrane-fusion protein of T1SS CH54_RS13320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH54_RS13320 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_RS13325 PF00462 Glutaredoxin CH54_RS13325 PF08534 Redoxin CH54_RS13330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS13330 PF03466 LysR substrate binding domain CH54_RS13335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH54_RS13335 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_RS13340 PF00440 Bacterial regulatory proteins, tetR family CH54_RS13345 PF07226 Protein of unknown function (DUF1422) CH54_RS13350 PF05958 tRNA (Uracil-5-)-methyltransferase CH54_RS13355 PF07715 TonB-dependent Receptor Plug Domain CH54_RS13355 PF00593 TonB dependent receptor CH54_RS13360 PF01177 Asp/Glu/Hydantoin racemase CH54_RS13400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS13400 PF03466 LysR substrate binding domain CH54_RS13405 PF04219 Protein of unknown function, DUF CH54_RS13410 PF01078 Magnesium chelatase, subunit ChlI CH54_RS13410 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH54_RS13415 PF00205 Thiamine pyrophosphate enzyme, central domain CH54_RS13415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_RS13415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_RS13425 PF01063 Amino-transferase class IV CH54_RS13430 PF00920 Dehydratase family CH54_RS13435 PF00291 Pyridoxal-phosphate dependent enzyme CH54_RS13435 PF00585 C-terminal regulatory domain of Threonine dehydratase CH54_RS13440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS13440 PF03466 LysR substrate binding domain CH54_RS13445 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH54_RS13445 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH54_RS13450 PF06958 S-type Pyocin CH54_RS13455 PF01320 Colicin immunity protein / pyocin immunity protein CH54_RS13460 PF01320 Colicin immunity protein / pyocin immunity protein CH54_RS13465 PF01320 Colicin immunity protein / pyocin immunity protein CH54_RS13475 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_RS13475 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_RS13485 PF13953 PapC C-terminal domain CH54_RS13485 PF13954 PapC N-terminal domain CH54_RS13485 PF00577 Outer membrane usher protein CH54_RS13490 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_RS13490 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_RS13505 PF00580 UvrD/REP helicase N-terminal domain CH54_RS13505 PF13361 UvrD-like helicase C-terminal domain CH54_RS13510 PF02541 Ppx/GppA phosphatase family CH54_RS13515 PF00271 Helicase conserved C-terminal domain CH54_RS13515 PF00270 DEAD/DEAH box helicase CH54_RS13520 PF00085 Thioredoxin CH54_RS13525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_RS13525 PF07497 Rho termination factor, RNA-binding domain CH54_RS13525 PF07498 Rho termination factor, N-terminal domain CH54_RS13535 PF00953 Glycosyl transferase family 4 CH54_RS13540 PF02706 Chain length determinant protein CH54_RS13545 PF02350 UDP-N-acetylglucosamine 2-epimerase CH54_RS13550 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH54_RS13550 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH54_RS13550 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH54_RS13555 PF16363 GDP-mannose 4,6 dehydratase CH54_RS13560 PF00483 Nucleotidyl transferase CH54_RS13570 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH54_RS13575 PF01943 Polysaccharide biosynthesis protein CH54_RS13580 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH54_RS13585 PF06899 WzyE protein, O-antigen assembly polymerase CH54_RS13590 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH54_RS13595 PF00324 Amino acid permease CH54_RS13620 PF07719 Tetratricopeptide repeat CH54_RS13620 PF07219 HemY protein N-terminus CH54_RS13625 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH54_RS13630 PF02602 Uroporphyrinogen-III synthase HemD CH54_RS13635 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH54_RS13635 PF03900 Porphobilinogen deaminase, C-terminal domain CH54_RS13640 PF01295 Adenylate cyclase, class-I CH54_RS13640 PF12633 Adenylate cyclase NT domain CH54_RS13645 PF01491 Frataxin-like domain CH54_RS13650 PF13627 Prokaryotic lipoprotein-attachment site CH54_RS13655 PF01678 Diaminopimelate epimerase CH54_RS13660 PF04340 Protein of unknown function, DUF484 CH54_RS13665 PF02899 Phage integrase, N-terminal SAM-like domain CH54_RS13665 PF00589 Phage integrase family CH54_RS13670 PF13419 Haloacid dehalogenase-like hydrolase CH54_RS13675 PF00580 UvrD/REP helicase N-terminal domain CH54_RS13675 PF13361 UvrD-like helicase C-terminal domain CH54_RS13690 PF09370 Phosphoenolpyruvate hydrolase-like CH54_RS13700 PF01544 CorA-like Mg2+ transporter protein CH54_RS13705 PF00892 EamA-like transporter family CH54_RS13710 PF03061 Thioesterase superfamily CH54_RS13715 PF02253 Phospholipase A1 CH54_RS13720 PF09382 RQC domain CH54_RS13720 PF16124 RecQ zinc-binding CH54_RS13720 PF00271 Helicase conserved C-terminal domain CH54_RS13720 PF00270 DEAD/DEAH box helicase CH54_RS13720 PF00570 HRDC domain CH54_RS13725 PF01810 LysE type translocator CH54_RS13730 PF01810 LysE type translocator CH54_RS13735 PF12146 Serine aminopeptidase, S33 CH54_RS13745 PF03009 Glycerophosphoryl diester phosphodiesterase family CH54_RS13750 PF07690 Major Facilitator Superfamily CH54_RS13755 PF04324 BFD-like [2Fe-2S] binding domain CH54_RS13755 PF01266 FAD dependent oxidoreductase CH54_RS13760 PF00890 FAD binding domain CH54_RS13765 PF13183 4Fe-4S dicluster domain CH54_RS13765 PF02754 Cysteine-rich domain CH54_RS13770 PF08786 DcrB CH54_RS13775 PF02592 Putative vitamin uptake transporter CH54_RS13780 PF01206 Sulfurtransferase TusA CH54_RS13785 PF00403 Heavy-metal-associated domain CH54_RS13790 PF07947 YhhN family CH54_RS13805 PF06611 Protein of unknown function (DUF1145) CH54_RS13815 PF02881 SRP54-type protein, helical bundle domain CH54_RS13815 PF00448 SRP54-type protein, GTPase domain CH54_RS13820 PF00005 ABC transporter CH54_RS13825 PF18075 FtsX extracellular domain CH54_RS13825 PF02687 FtsX-like permease family CH54_RS13830 PF00140 Sigma-70 factor, region 1.2 CH54_RS13830 PF04542 Sigma-70 region 2 CH54_RS13830 PF04545 Sigma-70, region 4 CH54_RS13845 PF12568 Acetyltransferase (GNAT) domain, PanZ CH54_RS13850 PF13458 Periplasmic binding protein CH54_RS13855 PF02653 Branched-chain amino acid transport system / permease component CH54_RS13860 PF02653 Branched-chain amino acid transport system / permease component CH54_RS13860 PF11862 Domain of unknown function (DUF3382) CH54_RS13865 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH54_RS13865 PF00005 ABC transporter CH54_RS13870 PF00005 ABC transporter CH54_RS13905 PF13416 Bacterial extracellular solute-binding protein CH54_RS13910 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS13915 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS13920 PF17912 MalK OB fold domain CH54_RS13920 PF00005 ABC transporter CH54_RS13925 PF03009 Glycerophosphoryl diester phosphodiesterase family CH54_RS13930 PF03547 Membrane transport protein CH54_RS13935 PF00892 EamA-like transporter family CH54_RS13940 PF03466 LysR substrate binding domain CH54_RS13940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS13945 PF08267 Cobalamin-independent synthase, N-terminal domain CH54_RS13945 PF01717 Cobalamin-independent synthase, Catalytic domain CH54_RS13950 PF01738 Dienelactone hydrolase family CH54_RS13955 PF01048 Phosphorylase superfamily CH54_RS13965 PF13722 5TM C-terminal transporter carbon starvation CstA CH54_RS13965 PF02554 Carbon starvation protein CstA CH54_RS13970 PF09335 SNARE associated Golgi protein CH54_RS13975 PF02646 RmuC family CH54_RS13980 PF01209 ubiE/COQ5 methyltransferase family CH54_RS13985 PF02036 SCP-2 sterol transfer family CH54_RS13990 PF03109 ABC1 family CH54_RS13995 PF02416 mttA/Hcf106 family CH54_RS14005 PF00902 Sec-independent protein translocase protein (TatC) CH54_RS14010 PF01026 TatD related DNase CH54_RS14015 PF00490 Delta-aminolevulinic acid dehydratase CH54_RS14020 PF02357 Transcription termination factor nusG CH54_RS14025 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH54_RS14030 PF00970 Oxidoreductase FAD-binding domain CH54_RS14030 PF00175 Oxidoreductase NAD-binding domain CH54_RS14035 PF00108 Thiolase, N-terminal domain CH54_RS14035 PF02803 Thiolase, C-terminal domain CH54_RS14040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH54_RS14040 PF00378 Enoyl-CoA hydratase/isomerase CH54_RS14040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH54_RS14045 PF00557 Metallopeptidase family M24 CH54_RS14050 PF09186 Domain of unknown function (DUF1949) CH54_RS14050 PF01205 Uncharacterized protein family UPF0029 CH54_RS14055 PF02386 Cation transport protein CH54_RS14060 PF12724 Flavodoxin domain CH54_RS14085 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH54_RS14085 PF01565 FAD binding domain CH54_RS14090 PF02237 Biotin protein ligase C terminal domain CH54_RS14090 PF03099 Biotin/lipoate A/B protein ligase family CH54_RS14090 PF08279 HTH domain CH54_RS14095 PF00485 Phosphoribulokinase / Uridine kinase family CH54_RS14100 PF13673 Acetyltransferase (GNAT) domain CH54_RS14130 PF00009 Elongation factor Tu GTP binding domain CH54_RS14130 PF03144 Elongation factor Tu domain 2 CH54_RS14130 PF03143 Elongation factor Tu C-terminal domain CH54_RS14135 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH54_RS14140 PF02357 Transcription termination factor nusG CH54_RS14140 PF00467 KOW motif CH54_RS14145 PF03946 Ribosomal protein L11, N-terminal domain CH54_RS14145 PF00298 Ribosomal protein L11, RNA binding domain CH54_RS14150 PF00687 Ribosomal protein L1p/L10e family CH54_RS14155 PF00466 Ribosomal protein L10 CH54_RS14160 PF16320 Ribosomal protein L7/L12 dimerisation domain CH54_RS14160 PF00542 Ribosomal protein L7/L12 C-terminal domain CH54_RS14165 PF04560 RNA polymerase Rpb2, domain 7 CH54_RS14165 PF04561 RNA polymerase Rpb2, domain 2 CH54_RS14165 PF04563 RNA polymerase beta subunit CH54_RS14165 PF04565 RNA polymerase Rpb2, domain 3 CH54_RS14165 PF00562 RNA polymerase Rpb2, domain 6 CH54_RS14165 PF10385 RNA polymerase beta subunit external 1 domain CH54_RS14170 PF05000 RNA polymerase Rpb1, domain 4 CH54_RS14170 PF00623 RNA polymerase Rpb1, domain 2 CH54_RS14170 PF04983 RNA polymerase Rpb1, domain 3 CH54_RS14170 PF04998 RNA polymerase Rpb1, domain 5 CH54_RS14170 PF04997 RNA polymerase Rpb1, domain 1 CH54_RS14175 PF06968 Biotin and Thiamin Synthesis associated domain CH54_RS14175 PF04055 Radical SAM superfamily CH54_RS14180 PF05690 Thiazole biosynthesis protein ThiG CH54_RS14185 PF02597 ThiS family CH54_RS14190 PF00899 ThiF family CH54_RS14195 PF02581 Thiamine monophosphate synthase CH54_RS14200 PF13667 ThiC-associated domain CH54_RS14200 PF01964 Radical SAM ThiC family CH54_RS14205 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH54_RS14210 PF09297 NADH pyrophosphatase zinc ribbon domain CH54_RS14210 PF00293 NUDIX domain CH54_RS14215 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH54_RS14220 PF04493 Endonuclease V CH54_RS14225 PF04222 Protein of unknown function (DUF416) CH54_RS14230 PF00216 Bacterial DNA-binding protein CH54_RS14235 PF07356 Protein of unknown function (DUF1481) CH54_RS14240 PF02844 Phosphoribosylglycinamide synthetase, N domain CH54_RS14240 PF02843 Phosphoribosylglycinamide synthetase, C domain CH54_RS14240 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH54_RS14245 PF01808 AICARFT/IMPCHase bienzyme CH54_RS14245 PF02142 MGS-like domain CH54_RS14280 PF04204 Homoserine O-succinyltransferase CH54_RS14285 PF01274 Malate synthase CH54_RS14290 PF00463 Isocitrate lyase family CH54_RS14295 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH54_RS14300 PF01614 Bacterial transcriptional regulator CH54_RS14300 PF09339 IclR helix-turn-helix domain CH54_RS14305 PF02607 B12 binding domain CH54_RS14305 PF02310 B12 binding domain CH54_RS14305 PF00809 Pterin binding enzyme CH54_RS14305 PF02574 Homocysteine S-methyltransferase CH54_RS14305 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH54_RS14310 PF13332 Hemagglutinin repeat CH54_RS14310 PF05860 haemagglutination activity domain CH54_RS14315 PF08479 POTRA domain, ShlB-type CH54_RS14315 PF17287 POTRA domain CH54_RS14315 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH54_RS14320 PF01758 Sodium Bile acid symporter family CH54_RS14325 PF01842 ACT domain CH54_RS14325 PF00696 Amino acid kinase family CH54_RS14330 PF00342 Phosphoglucose isomerase CH54_RS14335 PF06146 Phosphate-starvation-inducible E CH54_RS14340 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS14345 PF14785 Maltose transport system permease protein MalF P2 domain CH54_RS14345 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS14350 PF01547 Bacterial extracellular solute-binding protein CH54_RS14355 PF17912 MalK OB fold domain CH54_RS14355 PF00005 ABC transporter CH54_RS14360 PF02264 LamB porin CH54_RS14365 PF07148 Maltose operon periplasmic protein precursor (MalM) CH54_RS14375 PF04345 Chorismate lyase CH54_RS14380 PF01040 UbiA prenyltransferase family CH54_RS14385 PF01553 Acyltransferase CH54_RS14390 PF01219 Prokaryotic diacylglycerol kinase CH54_RS14395 PF01726 LexA DNA binding domain CH54_RS14395 PF00717 Peptidase S24-like CH54_RS14400 PF05532 CsbD-like CH54_RS14405 PF01475 Ferric uptake regulator family CH54_RS14410 PF01207 Dihydrouridine synthase (Dus) CH54_RS14415 PF09583 Phage shock protein G (Phageshock_PspG) CH54_RS14425 PF08240 Alcohol dehydrogenase GroES-like domain CH54_RS14425 PF00107 Zinc-binding dehydrogenase CH54_RS14430 PF03796 DnaB-like helicase C terminal domain CH54_RS14430 PF00772 DnaB-like helicase N terminal domain CH54_RS14435 PF00842 Alanine racemase, C-terminal domain CH54_RS14435 PF01168 Alanine racemase, N-terminal domain CH54_RS14440 PF00155 Aminotransferase class I and II CH54_RS14445 PF04237 YjbR CH54_RS14450 PF17755 UvrA DNA-binding domain CH54_RS14450 PF00005 ABC transporter CH54_RS14450 PF17760 UvrA interaction domain CH54_RS14455 PF00436 Single-strand binding protein family CH54_RS14475 PF00860 Permease family CH54_RS14480 PF00999 Sodium/hydrogen exchanger family CH54_RS14485 PF03466 LysR substrate binding domain CH54_RS14485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS14490 PF03788 LrgA family CH54_RS14505 PF03279 Bacterial lipid A biosynthesis acyltransferase CH54_RS14510 PF00939 Sodium:sulfate symporter transmembrane region CH54_RS14520 PF00313 'Cold-shock' DNA-binding domain CH54_RS14525 PF00313 'Cold-shock' DNA-binding domain CH54_RS14530 PF05433 Glycine zipper 2TM domain CH54_RS14535 PF08448 PAS fold CH54_RS14535 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS14540 PF02954 Bacterial regulatory protein, Fis family CH54_RS14545 PF01207 Dihydrouridine synthase (Dus) CH54_RS14555 PF00474 Sodium:solute symporter family CH54_RS14560 PF06196 Protein of unknown function (DUF997) CH54_RS14565 PF00289 Biotin carboxylase, N-terminal domain CH54_RS14565 PF02785 Biotin carboxylase C-terminal domain CH54_RS14565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH54_RS14570 PF00364 Biotin-requiring enzyme CH54_RS14575 PF01220 Dehydroquinase class II CH54_RS14580 PF01794 Ferric reductase like transmembrane component CH54_RS14585 PF00174 Oxidoreductase molybdopterin binding domain CH54_RS14590 PF00107 Zinc-binding dehydrogenase CH54_RS14590 PF08240 Alcohol dehydrogenase GroES-like domain CH54_RS14595 PF17157 Gammaproteobacterial periplasmic sensor domain CH54_RS14595 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS14595 PF00563 EAL domain CH54_RS14605 PF04085 rod shape-determining protein MreC CH54_RS14610 PF04093 rod shape-determining protein MreD CH54_RS14615 PF02545 Maf-like protein CH54_RS14620 PF00575 S1 RNA binding domain CH54_RS14620 PF10150 Ribonuclease E/G family CH54_RS14625 PF13502 AsmA-like C-terminal region CH54_RS14625 PF13116 Protein of unknown function CH54_RS14630 PF00795 Carbon-nitrogen hydrolase CH54_RS14635 PF01523 Putative modulator of DNA gyrase CH54_RS14640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS14640 PF03466 LysR substrate binding domain CH54_RS14645 PF07869 Protein of unknown function (DUF1656) CH54_RS14650 PF13533 Biotin-lipoyl like CH54_RS14655 PF04632 Fusaric acid resistance protein family CH54_RS14660 PF00171 Aldehyde dehydrogenase family CH54_RS14670 PF01337 Barstar (barnase inhibitor) CH54_RS14675 PF04751 Protein of unknown function (DUF615) CH54_RS14680 PF01523 Putative modulator of DNA gyrase CH54_RS14685 PF07361 Cytochrome b562 CH54_RS14690 PF01272 Transcription elongation factor, GreA/GreB, C-term CH54_RS14690 PF14760 Rnk N-terminus CH54_RS14720 PF01979 Amidohydrolase family CH54_RS14725 PF03841 L-seryl-tRNA selenium transferase CH54_RS14730 PF07071 KDGP aldolase CH54_RS14735 PF10282 Lactonase, 7-bladed beta-propeller CH54_RS14740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH54_RS14740 PF05043 Mga helix-turn-helix domain CH54_RS14740 PF00874 PRD domain CH54_RS14740 PF08279 HTH domain CH54_RS14745 PF00690 Cation transporter/ATPase, N-terminus CH54_RS14745 PF00689 Cation transporting ATPase, C-terminus CH54_RS14750 PF00356 Bacterial regulatory proteins, lacI family CH54_RS14755 PF00367 phosphotransferase system, EIIB CH54_RS14755 PF02378 Phosphotransferase system, EIIC CH54_RS14760 PF00128 Alpha amylase, catalytic domain CH54_RS14760 PF11941 Domain of unknown function (DUF3459) CH54_RS14765 PF01042 Endoribonuclease L-PSP CH54_RS14770 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH54_RS14770 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH54_RS14775 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH54_RS14775 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH54_RS14780 PF00381 PTS HPr component phosphorylation site CH54_RS14785 PF03668 P-loop ATPase protein family CH54_RS14790 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH54_RS14795 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH54_RS14800 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH54_RS14800 PF04552 Sigma-54, DNA binding domain CH54_RS14800 PF04963 Sigma-54 factor, core binding domain CH54_RS14805 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH54_RS14805 PF00005 ABC transporter CH54_RS14810 PF03968 OstA-like protein CH54_RS14815 PF06835 Lipopolysaccharide-assembly, LptC-related CH54_RS14825 PF01380 SIS domain CH54_RS14825 PF00571 CBS domain CH54_RS14830 PF01699 Sodium/calcium exchanger protein CH54_RS14835 PF00005 ABC transporter CH54_RS14840 PF02405 Permease MlaE CH54_RS14845 PF02470 MlaD protein CH54_RS14850 PF05494 MlaC protein CH54_RS14855 PF13466 STAS domain CH54_RS14860 PF01722 BolA-like protein CH54_RS14865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH54_RS14870 PF13180 PDZ domain CH54_RS14875 PF13180 PDZ domain CH54_RS14875 PF00595 PDZ domain CH54_RS14880 PF06295 Protein of unknown function (DUF1043) CH54_RS14885 PF03969 AFG1-like ATPase CH54_RS14890 PF00572 Ribosomal protein L13 CH54_RS14895 PF00380 Ribosomal protein S9/S16 CH54_RS14900 PF00043 Glutathione S-transferase, C-terminal domain CH54_RS14900 PF02798 Glutathione S-transferase, N-terminal domain CH54_RS14905 PF04386 Stringent starvation protein B CH54_RS14915 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_RS14915 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH54_RS14920 PF01645 Conserved region in glutamate synthase CH54_RS14920 PF00310 Glutamine amidotransferases class-II CH54_RS14920 PF04898 Glutamate synthase central domain CH54_RS14920 PF01493 GXGXG motif CH54_RS14925 PF16199 Radical_SAM C-terminal domain CH54_RS14925 PF04055 Radical SAM superfamily CH54_RS14930 PF00989 PAS fold CH54_RS14930 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS14930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS14930 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH54_RS14930 PF00072 Response regulator receiver domain CH54_RS14930 PF01627 Hpt domain CH54_RS14940 PF00912 Transglycosylase CH54_RS14945 PF04972 BON domain CH54_RS14950 PF13580 SIS domain CH54_RS14955 PF02021 Uncharacterised protein family UPF0102 CH54_RS14960 PF04348 LppC putative lipoprotein CH54_RS14965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_RS14995 PF00239 Resolvase, N terminal domain CH54_RS14995 PF02796 Helix-turn-helix domain of resolvase CH54_RS15005 PF00145 C-5 cytosine-specific DNA methylase CH54_RS15015 PF01381 Helix-turn-helix CH54_RS15020 PF13599 Pentapeptide repeats (9 copies) CH54_RS15040 PF03466 LysR substrate binding domain CH54_RS15040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS15045 PF00248 Aldo/keto reductase family CH54_RS15055 PF00106 short chain dehydrogenase CH54_RS15060 PF00107 Zinc-binding dehydrogenase CH54_RS15060 PF08240 Alcohol dehydrogenase GroES-like domain CH54_RS15065 PF17954 Quercetinase C-terminal cupin domain CH54_RS15065 PF02678 Pirin CH54_RS15070 PF03466 LysR substrate binding domain CH54_RS15070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS15075 PF13409 Glutathione S-transferase, N-terminal domain CH54_RS15080 PF07681 DoxX CH54_RS15085 PF13997 YqjK-like protein CH54_RS15090 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH54_RS15095 PF05957 Bacterial protein of unknown function (DUF883) CH54_RS15105 PF13721 SecD export protein N-terminal TM region CH54_RS15110 PF09335 SNARE associated Golgi protein CH54_RS15120 PF07729 FCD domain CH54_RS15120 PF00392 Bacterial regulatory proteins, gntR family CH54_RS15125 PF07690 Major Facilitator Superfamily CH54_RS15130 PF02614 Glucuronate isomerase CH54_RS15135 PF08125 Mannitol dehydrogenase C-terminal domain CH54_RS15135 PF01232 Mannitol dehydrogenase Rossmann domain CH54_RS15140 PF08666 SAF domain CH54_RS15140 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH54_RS15145 PF10688 Bacterial inner membrane protein CH54_RS15150 PF00375 Sodium:dicarboxylate symporter family CH54_RS15155 PF03741 Integral membrane protein TerC family CH54_RS15160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH54_RS15165 PF01863 Protein of unknown function DUF45 CH54_RS15175 PF05175 Methyltransferase small domain CH54_RS15180 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_RS15180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH54_RS15190 PF03729 Short repeat of unknown function (DUF308) CH54_RS15195 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH54_RS15200 PF13520 Amino acid permease CH54_RS15205 PF04960 Glutaminase CH54_RS15210 PF00367 phosphotransferase system, EIIB CH54_RS15210 PF02378 Phosphotransferase system, EIIC CH54_RS15215 PF13580 SIS domain CH54_RS15220 PF01418 Helix-turn-helix domain, rpiR family CH54_RS15220 PF01380 SIS domain CH54_RS15225 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH54_RS15225 PF00933 Glycosyl hydrolase family 3 N terminal domain CH54_RS15235 PF07075 Protein of unknown function (DUF1343) CH54_RS15245 PF04546 Sigma-70, non-essential region CH54_RS15245 PF04545 Sigma-70, region 4 CH54_RS15245 PF00140 Sigma-70 factor, region 1.2 CH54_RS15245 PF03979 Sigma-70 factor, region 1.1 CH54_RS15245 PF04539 Sigma-70 region 3 CH54_RS15245 PF04542 Sigma-70 region 2 CH54_RS15250 PF01807 CHC2 zinc finger CH54_RS15250 PF08275 DNA primase catalytic core, N-terminal domain CH54_RS15250 PF08278 DNA primase DnaG DnaB-binding CH54_RS15250 PF10410 DnaB-helicase binding domain of primase CH54_RS15255 PF01165 Ribosomal protein S21 CH54_RS15260 PF00814 Glycoprotease family CH54_RS15265 PF02660 Glycerol-3-phosphate acyltransferase CH54_RS15270 PF02152 Dihydroneopterin aldolase CH54_RS15275 PF02673 Bacitracin resistance protein BacA CH54_RS15280 PF12627 Probable RNA and SrmB- binding site of polymerase A CH54_RS15280 PF01743 Poly A polymerase head domain CH54_RS15280 PF01966 HD domain CH54_RS15285 PF08239 Bacterial SH3 domain CH54_RS15290 PF01928 CYTH domain CH54_RS15295 PF08335 GlnD PII-uridylyltransferase CH54_RS15295 PF03710 Glutamate-ammonia ligase adenylyltransferase CH54_RS15300 PF01467 Cytidylyltransferase-like CH54_RS15300 PF00294 pfkB family carbohydrate kinase CH54_RS15305 PF13520 Amino acid permease CH54_RS15310 PF04380 Membrane fusogenic activity CH54_RS15315 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH54_RS15320 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH54_RS15325 PF03738 Glutathionylspermidine synthase preATP-grasp CH54_RS15330 PF06693 Protein of unknown function (DUF1190) CH54_RS15335 PF02321 Outer membrane efflux protein CH54_RS15340 PF00293 NUDIX domain CH54_RS15345 PF06853 Protein of unknown function (DUF1249) CH54_RS15350 PF00149 Calcineurin-like phosphoesterase CH54_RS15355 PF05728 Uncharacterised protein family (UPF0227) CH54_RS15360 PF00204 DNA gyrase B CH54_RS15360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS15360 PF01751 Toprim domain CH54_RS15360 PF00986 DNA gyrase B subunit, carboxyl terminus CH54_RS15365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS15365 PF03466 LysR substrate binding domain CH54_RS15370 PF03992 Antibiotic biosynthesis monooxygenase CH54_RS15375 PF02525 Flavodoxin-like fold CH54_RS15380 PF00521 DNA gyrase/topoisomerase IV, subunit A CH54_RS15380 PF03989 DNA gyrase C-terminal domain, beta-propeller CH54_RS15385 PF01553 Acyltransferase CH54_RS15390 PF07731 Multicopper oxidase CH54_RS15390 PF07732 Multicopper oxidase CH54_RS15395 PF11842 Domain of unknown function (DUF3362) CH54_RS15395 PF08497 Radical SAM N-terminal CH54_RS15395 PF04055 Radical SAM superfamily CH54_RS15400 PF00248 Aldo/keto reductase family CH54_RS15405 PF00465 Iron-containing alcohol dehydrogenase CH54_RS15410 PF12833 Helix-turn-helix domain CH54_RS15410 PF06719 AraC-type transcriptional regulator N-terminus CH54_RS15415 PF09335 SNARE associated Golgi protein CH54_RS15420 PF01053 Cys/Met metabolism PLP-dependent enzyme CH54_RS15425 PF01618 MotA/TolQ/ExbB proton channel family CH54_RS15430 PF02472 Biopolymer transport protein ExbD/TolR CH54_RS15465 PF00437 Type II/IV secretion system protein CH54_RS15480 PF04972 BON domain CH54_RS15480 PF13629 Pilus formation protein N terminal region CH54_RS15480 PF00263 Bacterial type II and III secretion system protein CH54_RS15505 PF13532 2OG-Fe(II) oxygenase superfamily CH54_RS15510 PF00873 AcrB/AcrD/AcrF family CH54_RS15515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_RS15515 PF00529 HlyD membrane-fusion protein of T1SS CH54_RS15535 PF00593 TonB dependent receptor CH54_RS15535 PF07715 TonB-dependent Receptor Plug Domain CH54_RS15540 PF11806 Domain of unknown function (DUF3327) CH54_RS15540 PF00756 Putative esterase CH54_RS15545 PF03621 MbtH-like protein CH54_RS15550 PF00501 AMP-binding enzyme CH54_RS15550 PF13193 AMP-binding enzyme C-terminal domain CH54_RS15550 PF00668 Condensation domain CH54_RS15550 PF00975 Thioesterase domain CH54_RS15550 PF00550 Phosphopantetheine attachment site CH54_RS15555 PF05977 Transmembrane secretion effector CH54_RS15560 PF01032 FecCD transport family CH54_RS15565 PF01032 FecCD transport family CH54_RS15570 PF00005 ABC transporter CH54_RS15575 PF01497 Periplasmic binding protein CH54_RS15580 PF00425 chorismate binding enzyme CH54_RS15585 PF00501 AMP-binding enzyme CH54_RS15585 PF13193 AMP-binding enzyme C-terminal domain CH54_RS15590 PF00550 Phosphopantetheine attachment site CH54_RS15590 PF00857 Isochorismatase family CH54_RS15600 PF07690 Major Facilitator Superfamily CH54_RS15605 PF01370 NAD dependent epimerase/dehydratase family CH54_RS15615 PF00771 FHIPEP family CH54_RS15620 PF01312 FlhB HrpN YscU SpaS Family CH54_RS15625 PF01311 Bacterial export proteins, family 1 CH54_RS15630 PF01313 Bacterial export proteins, family 3 CH54_RS15635 PF00813 FliP family CH54_RS15640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH54_RS15650 PF02954 Bacterial regulatory protein, Fis family CH54_RS15650 PF00158 Sigma-54 interaction domain CH54_RS15650 PF00072 Response regulator receiver domain CH54_RS15655 PF02049 Flagellar hook-basal body complex protein FliE CH54_RS15660 PF01514 Secretory protein of YscJ/FliF family CH54_RS15660 PF08345 Flagellar M-ring protein C-terminal CH54_RS15675 PF18269 T3SS EscN ATPase C-terminal domain CH54_RS15675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_RS15700 PF00460 Flagella basal body rod protein CH54_RS15705 PF00460 Flagella basal body rod protein CH54_RS15705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_RS15710 PF13860 FlgD Ig-like domain CH54_RS15710 PF03963 Flagellar hook capping protein - N-terminal region CH54_RS15710 PF13861 FlgD Tudor-like domain CH54_RS15715 PF00460 Flagella basal body rod protein CH54_RS15715 PF07559 Flagellar basal body protein FlaE CH54_RS15715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_RS15720 PF00460 Flagella basal body rod protein CH54_RS15720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_RS15725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_RS15725 PF00460 Flagella basal body rod protein CH54_RS15730 PF02107 Flagellar L-ring protein CH54_RS15735 PF02119 Flagellar P-ring protein CH54_RS15750 PF00669 Bacterial flagellin N-terminal helical region CH54_RS15765 PF18500 CadC C-terminal domain 1 CH54_RS15765 PF00486 Transcriptional regulatory protein, C terminal CH54_RS15770 PF00700 Bacterial flagellin C-terminal helical region CH54_RS15770 PF00669 Bacterial flagellin N-terminal helical region CH54_RS15775 PF07196 Flagellin hook IN motif CH54_RS15775 PF02465 Flagellar hook-associated protein 2 N-terminus CH54_RS15775 PF07195 Flagellar hook-associated protein 2 C-terminus CH54_RS15780 PF02561 Flagellar protein FliS CH54_RS15800 PF04542 Sigma-70 region 2 CH54_RS15800 PF04545 Sigma-70, region 4 CH54_RS15805 PF01618 MotA/TolQ/ExbB proton channel family CH54_RS15810 PF00691 OmpA family CH54_RS15810 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH54_RS15815 PF05433 Glycine zipper 2TM domain CH54_RS15820 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CH54_RS15820 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH54_RS15825 PF13247 4Fe-4S dicluster domain CH54_RS15830 PF03916 Polysulphide reductase, NrfD CH54_RS15835 PF00374 Nickel-dependent hydrogenase CH54_RS15840 PF01750 Hydrogenase maturation protease CH54_RS15845 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CH54_RS15850 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH54_RS15855 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH54_RS15860 PF01455 HupF/HypC family CH54_RS15865 PF01924 Hydrogenase formation hypA family CH54_RS15870 PF02769 AIR synthase related protein, C-terminal domain CH54_RS15870 PF00586 AIR synthase related protein, N-terminal domain CH54_RS15875 PF01300 Telomere recombination CH54_RS15875 PF17788 HypF Kae1-like domain CH54_RS15875 PF00708 Acylphosphatase CH54_RS15875 PF07503 HypF finger CH54_RS15885 PF00563 EAL domain CH54_RS15885 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS15885 PF08447 PAS fold CH54_RS15885 PF08448 PAS fold CH54_RS15890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_RS15890 PF00529 HlyD membrane-fusion protein of T1SS CH54_RS15895 PF00873 AcrB/AcrD/AcrF family CH54_RS15905 PF03797 Autotransporter beta-domain CH54_RS15910 PF03806 AbgT putative transporter family CH54_RS15915 PF01546 Peptidase family M20/M25/M40 CH54_RS15915 PF07687 Peptidase dimerisation domain CH54_RS15920 PF02690 Na+/Pi-cotransporter CH54_RS15925 PF01156 Inosine-uridine preferring nucleoside hydrolase CH54_RS15935 PF07690 Major Facilitator Superfamily CH54_RS15935 PF00083 Sugar (and other) transporter CH54_RS15950 PF01497 Periplasmic binding protein CH54_RS15955 PF01032 FecCD transport family CH54_RS15960 PF01032 FecCD transport family CH54_RS15965 PF00005 ABC transporter CH54_RS15970 PF00557 Metallopeptidase family M24 CH54_RS15990 PF00529 HlyD membrane-fusion protein of T1SS CH54_RS15990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_RS15995 PF04632 Fusaric acid resistance protein family CH54_RS16015 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CH54_RS16030 PF00691 OmpA family CH54_RS16030 PF13488 Glycine zipper CH54_RS16040 PF00004 ATPase family associated with various cellular activities (AAA) CH54_RS16040 PF07724 AAA domain (Cdc48 subfamily) CH54_RS16040 PF17871 AAA lid domain CH54_RS16040 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_RS16045 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CH54_RS16045 PF04717 Type VI secretion system, phage-baseplate injector CH54_RS16045 PF13296 Putative type VI secretion system Rhs element Vgr CH54_RS16050 PF00182 Chitinase class I CH54_RS16140 PF13296 Putative type VI secretion system Rhs element Vgr CH54_RS16140 PF04717 Type VI secretion system, phage-baseplate injector CH54_RS16140 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CH54_RS16155 PF04717 Type VI secretion system, phage-baseplate injector CH54_RS16195 PF00296 Luciferase-like monooxygenase CH54_RS16200 PF09084 NMT1/THI5 like CH54_RS16205 PF00005 ABC transporter CH54_RS16210 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS16215 PF00248 Aldo/keto reductase family CH54_RS16220 PF03466 LysR substrate binding domain CH54_RS16220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS16235 PF00356 Bacterial regulatory proteins, lacI family CH54_RS16270 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CH54_RS16275 PF06755 CbtA_toxin of type IV toxin-antitoxin system CH54_RS16285 PF04002 RadC-like JAB domain CH54_RS16290 PF03230 Antirestriction protein CH54_RS16295 PF02574 Homocysteine S-methyltransferase CH54_RS16310 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CH54_RS16325 PF00691 OmpA family CH54_RS16325 PF05736 OprF membrane domain CH54_RS16335 PF00004 ATPase family associated with various cellular activities (AAA) CH54_RS16335 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_RS16335 PF17871 AAA lid domain CH54_RS16335 PF07724 AAA domain (Cdc48 subfamily) CH54_RS16350 PF04717 Type VI secretion system, phage-baseplate injector CH54_RS16365 PF01764 Lipase (class 3) CH54_RS16445 PF00580 UvrD/REP helicase N-terminal domain CH54_RS16445 PF13361 UvrD-like helicase C-terminal domain CH54_RS16465 PF00589 Phage integrase family CH54_RS16465 PF13356 Arm DNA-binding domain CH54_RS16465 PF14659 Phage integrase, N-terminal SAM-like domain CH54_RS16470 PF13614 AAA domain CH54_RS16475 PF03796 DnaB-like helicase C terminal domain CH54_RS16475 PF00772 DnaB-like helicase N terminal domain CH54_RS16485 PF00665 Integrase core domain CH54_RS16490 PF01527 Transposase CH54_RS16495 PF00589 Phage integrase family CH54_RS16505 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH54_RS16505 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH54_RS16505 PF01276 Orn/Lys/Arg decarboxylase, major domain CH54_RS16515 PF01464 Transglycosylase SLT domain CH54_RS16515 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH54_RS16520 PF04362 Bacterial Fe(2+) trafficking CH54_RS16525 PF10576 Iron-sulfur binding domain of endonuclease III CH54_RS16525 PF00633 Helix-hairpin-helix motif CH54_RS16525 PF00730 HhH-GPD superfamily base excision DNA repair protein CH54_RS16525 PF14815 NUDIX domain CH54_RS16530 PF02390 Putative methyltransferase CH54_RS16535 PF04320 Protein with unknown function (DUF469) CH54_RS16540 PF04960 Glutaminase CH54_RS16545 PF11101 Protein of unknown function (DUF2884) CH54_RS16550 PF04055 Radical SAM superfamily CH54_RS16550 PF06969 HemN C-terminal domain CH54_RS16555 PF01725 Ham1 family CH54_RS16560 PF02594 Uncharacterised ACR, YggU family COG1872 CH54_RS16565 PF02325 YGGT family CH54_RS16570 PF03807 NADP oxidoreductase coenzyme F420-dependent CH54_RS16570 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH54_RS16575 PF01168 Alanine racemase, N-terminal domain CH54_RS16580 PF00437 Type II/IV secretion system protein CH54_RS16585 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH54_RS16590 PF00795 Carbon-nitrogen hydrolase CH54_RS16595 PF03652 Holliday junction resolvase CH54_RS16600 PF02622 Uncharacterized ACR, COG1678 CH54_RS16605 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH54_RS16605 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH54_RS16610 PF04452 RNA methyltransferase CH54_RS16615 PF04231 Endonuclease I CH54_RS16620 PF17283 SprT-like zinc ribbon domain CH54_RS16620 PF10263 SprT-like family CH54_RS16630 PF04143 Sulphur transport CH54_RS16645 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH54_RS16645 PF02772 S-adenosylmethionine synthetase, central domain CH54_RS16645 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH54_RS16655 PF17810 Arginine decarboxylase helical bundle domain CH54_RS16655 PF17944 Arginine decarboxylase C-terminal helical extension CH54_RS16655 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH54_RS16660 PF00355 Rieske [2Fe-2S] domain CH54_RS16665 PF01435 Peptidase family M48 CH54_RS16670 PF00456 Transketolase, thiamine diphosphate binding domain CH54_RS16670 PF02779 Transketolase, pyrimidine binding domain CH54_RS16670 PF02780 Transketolase, C-terminal domain CH54_RS16675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_RS16675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH54_RS16680 PF00162 Phosphoglycerate kinase CH54_RS16685 PF01116 Fructose-bisphosphate aldolase class-II CH54_RS16695 PF05552 Conserved TM helix CH54_RS16695 PF00924 Mechanosensitive ion channel CH54_RS16700 PF01810 LysE type translocator CH54_RS16705 PF04402 Protein of unknown function (DUF541) CH54_RS16710 PF03466 LysR substrate binding domain CH54_RS16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS16715 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH54_RS16720 PF01842 ACT domain CH54_RS16720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH54_RS16720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_RS16725 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH54_RS16730 PF05164 Cell division protein ZapA CH54_RS16735 PF03695 Uncharacterised protein family (UPF0149) CH54_RS16740 PF05195 Aminopeptidase P, N-terminal domain CH54_RS16740 PF00557 Metallopeptidase family M24 CH54_RS16745 PF01494 FAD binding domain CH54_RS16750 PF01494 FAD binding domain CH54_RS16755 PF01571 Aminomethyltransferase folate-binding domain CH54_RS16755 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH54_RS16760 PF01597 Glycine cleavage H-protein CH54_RS16765 PF02347 Glycine cleavage system P-protein CH54_RS16780 PF03006 Haemolysin-III related CH54_RS16785 PF01571 Aminomethyltransferase folate-binding domain CH54_RS16790 PF03937 Flavinator of succinate dehydrogenase CH54_RS16795 PF07254 Membrane-bound toxin component of toxin-antitoxin system CH54_RS16800 PF00486 Transcriptional regulatory protein, C terminal CH54_RS16800 PF00072 Response regulator receiver domain CH54_RS16805 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS16805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS16805 PF00672 HAMP domain CH54_RS16810 PF06123 Inner membrane protein CreD CH54_RS16815 PF00258 Flavodoxin CH54_RS16820 PF02899 Phage integrase, N-terminal SAM-like domain CH54_RS16820 PF00589 Phage integrase family CH54_RS16825 PF13098 Thioredoxin-like domain CH54_RS16825 PF10411 Disulfide bond isomerase protein N-terminus CH54_RS16830 PF17768 RecJ OB domain CH54_RS16830 PF02272 DHHA1 domain CH54_RS16830 PF01368 DHH family CH54_RS16835 PF03462 PCRF domain CH54_RS16835 PF00472 RF-1 domain CH54_RS16840 PF01336 OB-fold nucleic acid binding domain CH54_RS16840 PF00152 tRNA synthetases class II (D, K and N) CH54_RS16850 PF00239 Resolvase, N terminal domain CH54_RS16850 PF02796 Helix-turn-helix domain of resolvase CH54_RS16860 PF01527 Transposase CH54_RS16865 PF00665 Integrase core domain CH54_RS16945 PF01037 Lrp/AsnC ligand binding domain CH54_RS16955 PF16338 Domain of unknown function (DUF4968) CH54_RS16955 PF17137 Domain of unknown function (DUF5110) CH54_RS16955 PF13802 Galactose mutarotase-like CH54_RS16955 PF01055 Glycosyl hydrolases family 31 CH54_RS16960 PF07690 Major Facilitator Superfamily CH54_RS16965 PF00356 Bacterial regulatory proteins, lacI family CH54_RS16970 PF00226 DnaJ domain CH54_RS16970 PF01556 DnaJ C terminal domain CH54_RS16985 PF01638 HxlR-like helix-turn-helix CH54_RS16990 PF00484 Carbonic anhydrase CH54_RS17005 PF00263 Bacterial type II and III secretion system protein CH54_RS17005 PF03958 Bacterial type II/III secretion system short domain CH54_RS17010 PF00437 Type II/IV secretion system protein CH54_RS17015 PF00482 Type II secretion system (T2SS), protein F CH54_RS17020 PF07963 Prokaryotic N-terminal methylation motif CH54_RS17020 PF08334 Type II secretion system (T2SS), protein G CH54_RS17030 PF11612 Type II secretion system (T2SS), protein J CH54_RS17030 PF07963 Prokaryotic N-terminal methylation motif CH54_RS17040 PF12693 GspL periplasmic domain CH54_RS17040 PF05134 Type II secretion system (T2SS), protein L CH54_RS17050 PF06750 Bacterial Peptidase A24 N-terminal domain CH54_RS17050 PF01478 Type IV leader peptidase family CH54_RS17085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS17085 PF03466 LysR substrate binding domain CH54_RS17090 PF07690 Major Facilitator Superfamily CH54_RS17095 PF03466 LysR substrate binding domain CH54_RS17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS17100 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH54_RS17100 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH54_RS17105 PF00356 Bacterial regulatory proteins, lacI family CH54_RS17110 PF00384 Molybdopterin oxidoreductase CH54_RS17110 PF01568 Molydopterin dinucleotide binding domain CH54_RS17115 PF00501 AMP-binding enzyme CH54_RS17115 PF01553 Acyltransferase CH54_RS17115 PF13193 AMP-binding enzyme C-terminal domain CH54_RS17120 PF07690 Major Facilitator Superfamily CH54_RS17125 PF00248 Aldo/keto reductase family CH54_RS17130 PF03741 Integral membrane protein TerC family CH54_RS17135 PF02976 DNA mismatch repair enzyme MutH CH54_RS17145 PF00293 NUDIX domain CH54_RS17150 PF05524 PEP-utilising enzyme, N-terminal CH54_RS17150 PF02896 PEP-utilising enzyme, TIM barrel domain CH54_RS17150 PF00391 PEP-utilising enzyme, mobile domain CH54_RS17150 PF01590 GAF domain CH54_RS17155 PF01790 Prolipoprotein diacylglyceryl transferase CH54_RS17160 PF00303 Thymidylate synthase CH54_RS17165 PF07963 Prokaryotic N-terminal methylation motif CH54_RS17165 PF00114 Pilin (bacterial filament) CH54_RS17180 PF12528 Type II secretion prepilin peptidase dependent protein C CH54_RS17180 PF07963 Prokaryotic N-terminal methylation motif CH54_RS17185 PF17946 RecC C-terminal domain CH54_RS17190 PF00675 Insulinase (Peptidase family M16) CH54_RS17190 PF05193 Peptidase M16 inactive domain CH54_RS17190 PF16187 Middle or third domain of peptidase_M16 CH54_RS17195 PF13361 UvrD-like helicase C-terminal domain CH54_RS17195 PF12705 PD-(D/E)XK nuclease superfamily CH54_RS17195 PF00580 UvrD/REP helicase N-terminal domain CH54_RS17200 PF13538 UvrD-like helicase C-terminal domain CH54_RS17205 PF00696 Amino acid kinase family CH54_RS17205 PF00583 Acetyltransferase (GNAT) family CH54_RS17210 PF11741 AMIN domain CH54_RS17210 PF01520 N-acetylmuramoyl-L-alanine amidase CH54_RS17230 PF06725 3D domain CH54_RS17230 PF03562 MltA specific insert domain CH54_RS17235 PF00899 ThiF family CH54_RS17240 PF02657 Fe-S metabolism associated domain CH54_RS17245 PF00266 Aminotransferase class-V CH54_RS17250 PF06004 Bacterial protein of unknown function (DUF903) CH54_RS17255 PF03466 LysR substrate binding domain CH54_RS17255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS17260 PF04241 Protein of unknown function (DUF423) CH54_RS17265 PF01728 FtsJ-like methyltransferase CH54_RS17265 PF18125 RlmM ferredoxin-like domain CH54_RS17270 PF01367 5'-3' exonuclease, C-terminal SAM fold CH54_RS17270 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH54_RS17275 PF11892 Domain of unknown function (DUF3412) CH54_RS17275 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH54_RS17275 PF03641 Possible lysine decarboxylase CH54_RS17280 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH54_RS17280 PF14489 QueF-like protein CH54_RS17285 PF07348 Syd protein (SUKH-2) CH54_RS17290 PF04287 tRNA pseudouridine synthase C CH54_RS17295 PF00849 RNA pseudouridylate synthase CH54_RS17300 PF00258 Flavodoxin CH54_RS17305 PF11944 Protein of unknown function (DUF3461) CH54_RS17310 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH54_RS17310 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_RS17310 PF14602 Hexapeptide repeat of succinyl-transferase CH54_RS17315 PF01909 Nucleotidyltransferase domain CH54_RS17315 PF01842 ACT domain CH54_RS17315 PF01966 HD domain CH54_RS17315 PF08335 GlnD PII-uridylyltransferase CH54_RS17320 PF00557 Metallopeptidase family M24 CH54_RS17325 PF00318 Ribosomal protein S2 CH54_RS17330 PF00889 Elongation factor TS CH54_RS17335 PF00696 Amino acid kinase family CH54_RS17340 PF01765 Ribosome recycling factor CH54_RS17345 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH54_RS17345 PF13288 DXP reductoisomerase C-terminal domain CH54_RS17345 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH54_RS17350 PF01255 Putative undecaprenyl diphosphate synthase CH54_RS17360 PF17820 PDZ domain CH54_RS17360 PF02163 Peptidase family M50 CH54_RS17365 PF01103 Surface antigen CH54_RS17365 PF07244 Surface antigen variable number repeat CH54_RS17370 PF03938 Outer membrane protein (OmpH-like) CH54_RS17375 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH54_RS17375 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_RS17380 PF07977 FabA-like domain CH54_RS17385 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_RS17385 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH54_RS17390 PF02684 Lipid-A-disaccharide synthetase CH54_RS17395 PF01351 Ribonuclease HII CH54_RS17400 PF02811 PHP domain CH54_RS17400 PF01336 OB-fold nucleic acid binding domain CH54_RS17400 PF14579 Helix-hairpin-helix motif CH54_RS17400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH54_RS17400 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH54_RS17405 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH54_RS17420 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH54_RS17425 PF01171 PP-loop family CH54_RS17425 PF11734 TilS substrate C-terminal domain CH54_RS17425 PF09179 TilS substrate binding domain CH54_RS17430 PF00034 Cytochrome c CH54_RS17435 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH54_RS17440 PF06786 Uncharacterised protein family (UPF0253) CH54_RS17445 PF07152 YaeQ protein CH54_RS17450 PF00472 RF-1 domain CH54_RS17455 PF04170 NlpE N-terminal domain CH54_RS17455 PF17185 NlpE C-terminal OB domain CH54_RS17460 PF04073 Aminoacyl-tRNA editing domain CH54_RS17460 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH54_RS17460 PF03129 Anticodon binding domain CH54_RS17465 PF18389 TrmO C-terminal domain CH54_RS17465 PF01980 tRNA-methyltransferase O CH54_RS17470 PF16358 RcsF lipoprotein CH54_RS17475 PF03180 NLPA lipoprotein CH54_RS17480 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS17485 PF09383 NIL domain CH54_RS17485 PF00005 ABC transporter CH54_RS17520 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH54_RS17525 PF13091 PLD-like domain CH54_RS17530 PF00583 Acetyltransferase (GNAT) family CH54_RS17530 PF13380 CoA binding domain CH54_RS17530 PF13607 Succinyl-CoA ligase like flavodoxin domain CH54_RS17535 PF03942 DTW domain CH54_RS17540 PF00085 Thioredoxin CH54_RS17545 PF00588 SpoU rRNA Methylase family CH54_RS17545 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH54_RS17550 PF07690 Major Facilitator Superfamily CH54_RS17555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_RS17555 PF00529 HlyD membrane-fusion protein of T1SS CH54_RS17560 PF01047 MarR family CH54_RS17565 PF05437 Branched-chain amino acid transport protein (AzlD) CH54_RS17570 PF03591 AzlC protein CH54_RS17575 PF07690 Major Facilitator Superfamily CH54_RS17580 PF00795 Carbon-nitrogen hydrolase CH54_RS17585 PF00155 Aminotransferase class I and II CH54_RS17590 PF00596 Class II Aldolase and Adducin N-terminal domain CH54_RS17600 PF03079 ARD/ARD' family CH54_RS17605 PF01008 Initiation factor 2 subunit family CH54_RS17610 PF01636 Phosphotransferase enzyme family CH54_RS17615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH54_RS17615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH54_RS17615 PF09317 Domain of unknown function (DUF1974) CH54_RS17620 PF13580 SIS domain CH54_RS17625 PF13230 Glutamine amidotransferases class-II CH54_RS17630 PF03734 L,D-transpeptidase catalytic domain CH54_RS17635 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH54_RS17635 PF11973 NQRA C-terminal domain CH54_RS17640 PF03116 NQR2, RnfD, RnfE family CH54_RS17645 PF04205 FMN-binding domain CH54_RS17650 PF02508 Rnf-Nqr subunit, membrane protein CH54_RS17655 PF02508 Rnf-Nqr subunit, membrane protein CH54_RS17660 PF00175 Oxidoreductase NAD-binding domain CH54_RS17660 PF00111 2Fe-2S iron-sulfur cluster binding domain CH54_RS17660 PF00970 Oxidoreductase FAD-binding domain CH54_RS17665 PF02424 ApbE family CH54_RS17670 PF04400 (Na+)-NQR maturation NqrM CH54_RS17675 PF03009 Glycerophosphoryl diester phosphodiesterase family CH54_RS17680 PF01820 D-ala D-ala ligase N-terminus CH54_RS17680 PF07478 D-ala D-ala ligase C-terminus CH54_RS17685 PF08348 YheO-like PAS domain CH54_RS17685 PF13309 HTH domain CH54_RS17690 PF00291 Pyridoxal-phosphate dependent enzyme CH54_RS17700 PF00817 impB/mucB/samB family CH54_RS17700 PF11798 IMS family HHH motif CH54_RS17700 PF11799 impB/mucB/samB family C-terminal domain CH54_RS17705 PF07687 Peptidase dimerisation domain CH54_RS17705 PF01546 Peptidase family M20/M25/M40 CH54_RS17710 PF02706 Chain length determinant protein CH54_RS17720 PF02350 UDP-N-acetylglucosamine 2-epimerase CH54_RS17725 PF01370 NAD dependent epimerase/dehydratase family CH54_RS17730 PF02719 Polysaccharide biosynthesis protein CH54_RS17730 PF08485 Polysaccharide biosynthesis protein C-terminal CH54_RS17755 PF00534 Glycosyl transferases group 1 CH54_RS17755 PF13439 Glycosyltransferase Family 4 CH54_RS17760 PF00534 Glycosyl transferases group 1 CH54_RS17765 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CH54_RS17770 PF01467 Cytidylyltransferase-like CH54_RS17780 PF00156 Phosphoribosyl transferase domain CH54_RS17785 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CH54_RS17790 PF07417 Sigma factor-binding transcriptional regulator Crl CH54_RS17795 PF01472 PUA domain CH54_RS17795 PF00696 Amino acid kinase family CH54_RS17800 PF00171 Aldehyde dehydrogenase family CH54_RS17805 PF00294 pfkB family carbohydrate kinase CH54_RS17810 PF04227 Indigoidine synthase A like protein CH54_RS17815 PF07662 Na+ dependent nucleoside transporter C-terminus CH54_RS17815 PF01773 Na+ dependent nucleoside transporter N-terminus CH54_RS17820 PF00392 Bacterial regulatory proteins, gntR family CH54_RS17820 PF07702 UTRA domain CH54_RS17825 PF00367 phosphotransferase system, EIIB CH54_RS17825 PF02378 Phosphotransferase system, EIIC CH54_RS17830 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH54_RS17830 PF02056 Family 4 glycosyl hydrolase CH54_RS17835 PF07317 Flagellar regulator YcgR CH54_RS17835 PF07238 PilZ domain CH54_RS17840 PF06165 Glycosyltransferase family 36 CH54_RS17840 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH54_RS17840 PF10091 Putative glucoamylase CH54_RS17855 PF08241 Methyltransferase domain CH54_RS17875 PF01202 Shikimate kinase CH54_RS17880 PF06865 Pyrimidine/purine nucleoside phosphorylase CH54_RS17885 PF04381 Putative exonuclease, RdgC CH54_RS17890 PF00480 ROK family CH54_RS17895 PF13476 AAA domain CH54_RS17900 PF12320 Type 5 capsule protein repressor C-terminal domain CH54_RS17900 PF00149 Calcineurin-like phosphoesterase CH54_RS17905 PF00486 Transcriptional regulatory protein, C terminal CH54_RS17905 PF00072 Response regulator receiver domain CH54_RS17910 PF11808 Phosphate regulon sensor protein PhoR CH54_RS17910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS17910 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS17910 PF00989 PAS fold CH54_RS17915 PF12849 PBP superfamily domain CH54_RS17920 PF05525 Branched-chain amino acid transport protein CH54_RS17925 PF00324 Amino acid permease CH54_RS17930 PF00128 Alpha amylase, catalytic domain CH54_RS17930 PF02903 Alpha amylase, N-terminal ig-like domain CH54_RS17945 PF00578 AhpC/TSA family CH54_RS17945 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH54_RS17950 PF04336 Acyl carrier protein phosphodiesterase CH54_RS17955 PF02547 Queuosine biosynthesis protein CH54_RS17960 PF13018 Extended Signal Peptide of Type V secretion system CH54_RS17960 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH54_RS17960 PF03797 Autotransporter beta-domain CH54_RS17980 PF01702 Queuine tRNA-ribosyltransferase CH54_RS17985 PF02699 Preprotein translocase subunit CH54_RS17990 PF07549 SecD/SecF GG Motif CH54_RS17990 PF13721 SecD export protein N-terminal TM region CH54_RS17990 PF02355 Protein export membrane protein CH54_RS17995 PF07549 SecD/SecF GG Motif CH54_RS17995 PF02355 Protein export membrane protein CH54_RS18005 PF03477 ATP cone domain CH54_RS18010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH54_RS18010 PF01872 RibD C-terminal domain CH54_RS18015 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH54_RS18020 PF01029 NusB family CH54_RS18025 PF02769 AIR synthase related protein, C-terminal domain CH54_RS18025 PF00586 AIR synthase related protein, N-terminal domain CH54_RS18030 PF04608 Phosphatidylglycerophosphatase A CH54_RS18035 PF02780 Transketolase, C-terminal domain CH54_RS18035 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH54_RS18035 PF02779 Transketolase, pyrimidine binding domain CH54_RS18040 PF00348 Polyprenyl synthetase CH54_RS18045 PF02609 Exonuclease VII small subunit CH54_RS18050 PF02926 THUMP domain CH54_RS18050 PF02568 Thiamine biosynthesis protein (ThiI) CH54_RS18055 PF01965 DJ-1/PfpI family CH54_RS18060 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH54_RS18060 PF02558 Ketopantoate reductase PanE/ApbA CH54_RS18065 PF04461 Protein of unknown function (DUF520) CH54_RS18070 PF07690 Major Facilitator Superfamily CH54_RS18075 PF01040 UbiA prenyltransferase family CH54_RS18080 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH54_RS18085 PF00510 Cytochrome c oxidase subunit III CH54_RS18090 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH54_RS18095 PF06481 COX Aromatic Rich Motif CH54_RS18095 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH54_RS18100 PF03502 Nucleoside-specific channel-forming protein, Tsx CH54_RS18105 PF07690 Major Facilitator Superfamily CH54_RS18110 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH54_RS18110 PF03923 Uncharacterized lipoprotein CH54_RS18115 PF01722 BolA-like protein CH54_RS18120 PF05698 Bacterial trigger factor protein (TF) C-terminus CH54_RS18120 PF05697 Bacterial trigger factor protein (TF) CH54_RS18120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH54_RS18125 PF00574 Clp protease CH54_RS18130 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_RS18130 PF07724 AAA domain (Cdc48 subfamily) CH54_RS18130 PF06689 ClpX C4-type zinc finger CH54_RS18135 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH54_RS18135 PF00004 ATPase family associated with various cellular activities (AAA) CH54_RS18135 PF05362 Lon protease (S16) C-terminal proteolytic domain CH54_RS18140 PF00216 Bacterial DNA-binding protein CH54_RS18145 PF13145 PPIC-type PPIASE domain CH54_RS18160 PF06508 Queuosine biosynthesis protein QueC CH54_RS18165 PF12793 Sugar transport-related sRNA regulator N-term CH54_RS18165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_RS18180 PF01037 Lrp/AsnC ligand binding domain CH54_RS18180 PF13404 AsnC-type helix-turn-helix domain CH54_RS18185 PF00005 ABC transporter CH54_RS18185 PF00664 ABC transporter transmembrane region CH54_RS18190 PF00664 ABC transporter transmembrane region CH54_RS18190 PF00005 ABC transporter CH54_RS18195 PF00543 Nitrogen regulatory protein P-II CH54_RS18200 PF00909 Ammonium Transporter Family CH54_RS18210 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH54_RS18215 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH54_RS18220 PF05321 Haemolysin expression modulating protein CH54_RS18225 PF10757 Biofilm formation regulator YbaJ CH54_RS18235 PF00005 ABC transporter CH54_RS18240 PF00950 ABC 3 transport family CH54_RS18245 PF01297 Zinc-uptake complex component A periplasmic CH54_RS18250 PF00444 Ribosomal protein L36 CH54_RS18255 PF01197 Ribosomal protein L31 CH54_RS18260 PF10797 Protein of unknown function CH54_RS18265 PF10941 Protein of unknown function DUF2620 CH54_RS18270 PF01676 Metalloenzyme superfamily CH54_RS18275 PF01168 Alanine racemase, N-terminal domain CH54_RS18285 PF00873 AcrB/AcrD/AcrF family CH54_RS18290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_RS18290 PF00529 HlyD membrane-fusion protein of T1SS CH54_RS18295 PF08361 MAATS-type transcriptional repressor, C-terminal region CH54_RS18295 PF00440 Bacterial regulatory proteins, tetR family CH54_RS18300 PF02635 DsrE/DsrF-like family CH54_RS18305 PF12795 Mechanosensitive ion channel porin domain CH54_RS18305 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH54_RS18305 PF00924 Mechanosensitive ion channel CH54_RS18310 PF10689 Protein of unknown function (DUF2496) CH54_RS18320 PF04304 Protein of unknown function (DUF454) CH54_RS18325 PF00156 Phosphoribosyl transferase domain CH54_RS18330 PF12170 DNA polymerase III tau subunit V interacting with alpha CH54_RS18330 PF12169 DNA polymerase III subunits gamma and tau domain III CH54_RS18330 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH54_RS18335 PF02575 YbaB/EbfC DNA-binding family CH54_RS18340 PF13662 Toprim domain CH54_RS18340 PF02132 RecR protein CH54_RS18345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS18345 PF00183 Hsp90 protein CH54_RS18350 PF05191 Adenylate kinase, active site lid CH54_RS18355 PF00762 Ferrochelatase CH54_RS18360 PF01943 Polysaccharide biosynthesis protein CH54_RS18365 PF01501 Glycosyl transferase family 8 CH54_RS18365 PF00535 Glycosyl transferase family 2 CH54_RS18370 PF00535 Glycosyl transferase family 2 CH54_RS18375 PF13439 Glycosyltransferase Family 4 CH54_RS18375 PF00534 Glycosyl transferases group 1 CH54_RS18380 PF00534 Glycosyl transferases group 1 CH54_RS18380 PF13439 Glycosyltransferase Family 4 CH54_RS18385 PF00953 Glycosyl transferase family 4 CH54_RS18390 PF02719 Polysaccharide biosynthesis protein CH54_RS18395 PF00534 Glycosyl transferases group 1 CH54_RS18395 PF13439 Glycosyltransferase Family 4 CH54_RS18400 PF16363 GDP-mannose 4,6 dehydratase CH54_RS18405 PF00294 pfkB family carbohydrate kinase CH54_RS18410 PF00999 Sodium/hydrogen exchanger family CH54_RS18410 PF02254 TrkA-N domain CH54_RS18415 PF07690 Major Facilitator Superfamily CH54_RS18420 PF00149 Calcineurin-like phosphoesterase CH54_RS18420 PF02872 5'-nucleotidase, C-terminal domain CH54_RS18425 PF04073 Aminoacyl-tRNA editing domain CH54_RS18430 PF01963 TraB family CH54_RS18435 PF00403 Heavy-metal-associated domain CH54_RS18440 PF13411 MerR HTH family regulatory protein CH54_RS18445 PF01957 NfeD-like C-terminal, partner-binding CH54_RS18450 PF01145 SPFH domain / Band 7 family CH54_RS18450 PF16200 C-terminal region of band_7 CH54_RS18455 PF00085 Thioredoxin CH54_RS18460 PF00106 short chain dehydrogenase CH54_RS18465 PF13472 GDSL-like Lipase/Acylhydrolase family CH54_RS18470 PF00005 ABC transporter CH54_RS18480 PF02222 ATP-grasp domain CH54_RS18480 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH54_RS18485 PF00731 AIR carboxylase CH54_RS18490 PF00149 Calcineurin-like phosphoesterase CH54_RS18495 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH54_RS18500 PF09190 DALR domain CH54_RS18500 PF01406 tRNA synthetases class I (C) catalytic domain CH54_RS18510 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH54_RS18510 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH54_RS18520 PF00589 Phage integrase family CH54_RS18575 PF03837 RecT family CH54_RS18655 PF00772 DnaB-like helicase N terminal domain CH54_RS18655 PF03796 DnaB-like helicase C terminal domain CH54_RS18690 PF07102 Protein of unknown function (DUF1364) CH54_RS18695 PF05866 Endodeoxyribonuclease RusA CH54_RS18715 PF00959 Phage lysozyme CH54_RS18735 PF03592 Terminase small subunit CH54_RS18840 PF03869 Arc-like DNA binding domain CH54_RS18865 PF03869 Arc-like DNA binding domain CH54_RS18885 PF00589 Phage integrase family CH54_RS18885 PF13356 Arm DNA-binding domain CH54_RS18885 PF14659 Phage integrase, N-terminal SAM-like domain CH54_RS18895 PF01226 Formate/nitrite transporter CH54_RS18900 PF00005 ABC transporter CH54_RS18905 PF03379 CcmB protein CH54_RS18910 PF01578 Cytochrome C assembly protein CH54_RS18915 PF04995 Heme exporter protein D (CcmD) CH54_RS18920 PF03100 CcmE CH54_RS18925 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH54_RS18925 PF01578 Cytochrome C assembly protein CH54_RS18930 PF08534 Redoxin CH54_RS18935 PF03918 Cytochrome C biogenesis protein CH54_RS18940 PF03918 Cytochrome C biogenesis protein CH54_RS18945 PF04333 MlaA lipoprotein CH54_RS18950 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH54_RS18955 PF04175 Protein of unknown function (DUF406) CH54_RS18960 PF02803 Thiolase, C-terminal domain CH54_RS18960 PF00108 Thiolase, N-terminal domain CH54_RS18965 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH54_RS18965 PF00378 Enoyl-CoA hydratase/isomerase CH54_RS18965 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH54_RS18970 PF00300 Histidine phosphatase superfamily (branch 1) CH54_RS18975 PF01713 Smr domain CH54_RS18980 PF05175 Methyltransferase small domain CH54_RS18985 PF01264 Chorismate synthase CH54_RS18990 PF03411 Penicillin-insensitive murein endopeptidase CH54_RS18995 PF01925 Sulfite exporter TauE/SafE CH54_RS19000 PF04315 Elongation factor P hydroxylase CH54_RS19005 PF08891 YfcL protein CH54_RS19010 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH54_RS19010 PF01266 FAD dependent oxidoreductase CH54_RS19015 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_RS19015 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_RS19020 PF00990 Diguanylate cyclase, GGDEF domain CH54_RS19025 PF01177 Asp/Glu/Hydantoin racemase CH54_RS19035 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH54_RS19040 PF00232 Glycosyl hydrolase family 1 CH54_RS19045 PF02378 Phosphotransferase system, EIIC CH54_RS19050 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH54_RS19055 PF00356 Bacterial regulatory proteins, lacI family CH54_RS19060 PF00328 Histidine phosphatase superfamily (branch 2) CH54_RS19065 PF03600 Citrate transporter CH54_RS19080 PF02683 Cytochrome C biogenesis protein transmembrane region CH54_RS19080 PF11412 Disulphide bond corrector protein DsbC CH54_RS19090 PF00578 AhpC/TSA family CH54_RS19095 PF00155 Aminotransferase class I and II CH54_RS19105 PF00892 EamA-like transporter family CH54_RS19110 PF12833 Helix-turn-helix domain CH54_RS19115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH54_RS19115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_RS19115 PF11890 Domain of unknown function (DUF3410) CH54_RS19120 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH54_RS19120 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH54_RS19125 PF01416 tRNA pseudouridine synthase CH54_RS19130 PF09335 SNARE associated Golgi protein CH54_RS19135 PF01039 Carboxyl transferase domain CH54_RS19135 PF17848 Acetyl-coA carboxylase zinc finger domain CH54_RS19140 PF02875 Mur ligase family, glutamate ligase domain CH54_RS19140 PF08245 Mur ligase middle domain CH54_RS19145 PF05036 Sporulation related domain CH54_RS19150 PF02674 Colicin V production protein CH54_RS19155 PF00156 Phosphoribosyl transferase domain CH54_RS19160 PF02441 Flavoprotein CH54_RS19165 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS19170 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS19175 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS19180 PF00005 ABC transporter CH54_RS19185 PF01370 NAD dependent epimerase/dehydratase family CH54_RS19185 PF08338 Domain of unknown function (DUF1731) CH54_RS19195 PF12850 Calcineurin-like phosphoesterase superfamily domain CH54_RS19200 PF00293 NUDIX domain CH54_RS19205 PF03611 PTS system sugar-specific permease component CH54_RS19215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH54_RS19220 PF00356 Bacterial regulatory proteins, lacI family CH54_RS19220 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH54_RS19225 PF07085 DRTGG domain CH54_RS19225 PF01515 Phosphate acetyl/butaryl transferase CH54_RS19230 PF00871 Acetokinase family CH54_RS19235 PF04217 Protein of unknown function, DUF412 CH54_RS19240 PF03887 YfbU domain CH54_RS19245 PF13419 Haloacid dehalogenase-like hydrolase CH54_RS19255 PF02080 TrkA-C domain CH54_RS19255 PF03600 Citrate transporter CH54_RS19265 PF00155 Aminotransferase class I and II CH54_RS19270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS19270 PF03466 LysR substrate binding domain CH54_RS19275 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH54_RS19280 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH54_RS19285 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH54_RS19285 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH54_RS19295 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH54_RS19295 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH54_RS19295 PF10531 SLBB domain CH54_RS19300 PF00384 Molybdopterin oxidoreductase CH54_RS19300 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS19300 PF01568 Molydopterin dinucleotide binding domain CH54_RS19300 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH54_RS19305 PF00146 NADH dehydrogenase CH54_RS19310 PF12838 4Fe-4S dicluster domain CH54_RS19315 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH54_RS19320 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH54_RS19325 PF00361 Proton-conducting membrane transporter CH54_RS19325 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH54_RS19330 PF00361 Proton-conducting membrane transporter CH54_RS19335 PF00361 Proton-conducting membrane transporter CH54_RS19345 PF06496 Protein of unknown function (DUF1097) CH54_RS19350 PF04074 YhcH/YjgK/YiaL CH54_RS19355 PF01202 Shikimate kinase CH54_RS19360 PF00106 short chain dehydrogenase CH54_RS19365 PF00356 Bacterial regulatory proteins, lacI family CH54_RS19370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH54_RS19370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_RS19375 PF07690 Major Facilitator Superfamily CH54_RS19380 PF03928 Haem-degrading CH54_RS19385 PF00920 Dehydratase family CH54_RS19390 PF05957 Bacterial protein of unknown function (DUF883) CH54_RS19400 PF00425 chorismate binding enzyme CH54_RS19405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_RS19405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_RS19405 PF16582 Middle domain of thiamine pyrophosphate CH54_RS19410 PF12697 Alpha/beta hydrolase family CH54_RS19415 PF00378 Enoyl-CoA hydratase/isomerase CH54_RS19420 PF13378 Enolase C-terminal domain-like CH54_RS19425 PF00501 AMP-binding enzyme CH54_RS19425 PF13193 AMP-binding enzyme C-terminal domain CH54_RS19430 PF06628 Catalase-related immune-responsive CH54_RS19430 PF00199 Catalase CH54_RS19435 PF07437 YfaZ precursor CH54_RS19440 PF03222 Tryptophan/tyrosine permease family CH54_RS19445 PF00994 Probable molybdopterin binding domain CH54_RS19450 PF03974 Ecotin CH54_RS19455 PF00111 2Fe-2S iron-sulfur cluster binding domain CH54_RS19460 PF00268 Ribonucleotide reductase, small chain CH54_RS19465 PF00317 Ribonucleotide reductase, all-alpha domain CH54_RS19465 PF03477 ATP cone domain CH54_RS19465 PF02867 Ribonucleotide reductase, barrel domain CH54_RS19475 PF03989 DNA gyrase C-terminal domain, beta-propeller CH54_RS19475 PF00521 DNA gyrase/topoisomerase IV, subunit A CH54_RS19480 PF09456 RcsC Alpha-Beta-Loop (ABL) CH54_RS19480 PF00512 His Kinase A (phospho-acceptor) domain CH54_RS19480 PF00072 Response regulator receiver domain CH54_RS19480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS19485 PF00072 Response regulator receiver domain CH54_RS19485 PF00196 Bacterial regulatory proteins, luxR family CH54_RS19490 PF01627 Hpt domain CH54_RS19490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_RS19490 PF16359 RcsD-ABL domain CH54_RS19495 PF07690 Major Facilitator Superfamily CH54_RS19510 PF00664 ABC transporter transmembrane region CH54_RS19510 PF00005 ABC transporter CH54_RS19515 PF00529 HlyD membrane-fusion protein of T1SS CH54_RS19520 PF00267 Gram-negative porin CH54_RS19535 PF00144 Beta-lactamase CH54_RS19545 PF12706 Beta-lactamase superfamily domain CH54_RS19550 PF00672 HAMP domain CH54_RS19550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_RS19550 PF02743 Cache domain CH54_RS19555 PF01278 Omptin family CH54_RS19560 PF06183 DinI-like family CH54_RS19570 PF01380 SIS domain CH54_RS19570 PF01418 Helix-turn-helix domain, rpiR family CH54_RS19575 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH54_RS19575 PF02378 Phosphotransferase system, EIIC CH54_RS19575 PF00367 phosphotransferase system, EIIB CH54_RS19580 PF00232 Glycosyl hydrolase family 1 CH54_RS19590 PF00884 Sulfatase CH54_RS19590 PF11893 Domain of unknown function (DUF3413) CH54_RS19595 PF07208 Protein of unknown function (DUF1414) CH54_RS19600 PF04245 37-kD nucleoid-associated bacterial protein CH54_RS19605 PF01386 Ribosomal L25p family CH54_RS19610 PF00271 Helicase conserved C-terminal domain CH54_RS19610 PF04851 Type III restriction enzyme, res subunit CH54_RS19615 PF01479 S4 domain CH54_RS19615 PF00849 RNA pseudouridylate synthase CH54_RS19620 PF07690 Major Facilitator Superfamily CH54_RS19630 PF13989 YejG-like protein CH54_RS19635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_RS19635 PF00005 ABC transporter CH54_RS19640 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS19640 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_RS19645 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS19650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_RS19655 PF12792 CSS motif domain associated with EAL CH54_RS19655 PF00563 EAL domain CH54_RS19665 PF00877 NlpC/P60 family CH54_RS19680 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH54_RS19680 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH54_RS19690 PF07729 FCD domain CH54_RS19690 PF00392 Bacterial regulatory proteins, gntR family CH54_RS19695 PF01232 Mannitol dehydrogenase Rossmann domain CH54_RS19695 PF08125 Mannitol dehydrogenase C-terminal domain CH54_RS19700 PF03786 D-mannonate dehydratase (UxuA) CH54_RS19705 PF09285 Elongation factor P, C-terminal CH54_RS19705 PF01132 Elongation factor P (EF-P) OB domain CH54_RS19705 PF08207 Elongation factor P (EF-P) KOW-like domain CH54_RS19710 PF03222 Tryptophan/tyrosine permease family CH54_RS19715 PF03692 Putative zinc- or iron-chelating domain CH54_RS19720 PF18364 Molybdopterin oxidoreductase N-terminal domain CH54_RS19720 PF00384 Molybdopterin oxidoreductase CH54_RS19720 PF01568 Molydopterin dinucleotide binding domain CH54_RS19725 PF00293 NUDIX domain CH54_RS19725 PF13344 Haloacid dehalogenase-like hydrolase CH54_RS19730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH54_RS19730 PF00381 PTS HPr component phosphorylation site CH54_RS19735 PF00294 pfkB family carbohydrate kinase CH54_RS19740 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH54_RS19740 PF02378 Phosphotransferase system, EIIC CH54_RS19745 PF01261 Xylose isomerase-like TIM barrel CH54_RS19750 PF03601 Conserved hypothetical protein 698 CH54_RS19765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_RS19765 PF03466 LysR substrate binding domain CH54_RS19770 PF00324 Amino acid permease CH54_RS19775 PF01032 FecCD transport family CH54_RS19780 PF00593 TonB dependent receptor CH54_RS19780 PF07715 TonB-dependent Receptor Plug Domain CH54_RS19785 PF00043 Glutathione S-transferase, C-terminal domain CH54_RS19785 PF13417 Glutathione S-transferase, N-terminal domain CH54_RS19800 PF03180 NLPA lipoprotein CH54_RS19805 PF09383 NIL domain CH54_RS19805 PF00005 ABC transporter CH54_RS19810 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS19825 PF01053 Cys/Met metabolism PLP-dependent enzyme CH54_RS19830 PF00571 CBS domain CH54_RS19830 PF00291 Pyridoxal-phosphate dependent enzyme CH54_RS19835 PF00768 D-alanyl-D-alanine carboxypeptidase CH54_RS19835 PF07943 Penicillin-binding protein 5, C-terminal domain CH54_RS19840 PF03313 Serine dehydratase alpha chain CH54_RS19840 PF03315 Serine dehydratase beta chain CH54_RS19850 PF00455 DeoR C terminal sensor domain CH54_RS19850 PF08220 DeoR-like helix-turn-helix domain CH54_RS19855 PF01791 DeoC/LacD family aldolase CH54_RS19860 PF01569 PAP2 superfamily CH54_RS19870 PF06826 Predicted Permease Membrane Region CH54_RS19870 PF02080 TrkA-C domain CH54_RS19875 PF00462 Glutaredoxin CH54_RS19880 PF07214 Protein of unknown function (DUF1418) CH54_RS19885 PF10722 Putative bacterial sensory transduction regulator CH54_RS19890 PF13416 Bacterial extracellular solute-binding protein CH54_RS19895 PF00005 ABC transporter CH54_RS19895 PF08402 TOBE domain CH54_RS19900 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS19905 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS19910 PF10767 Protein of unknown function (DUF2593) CH54_RS19915 PF05958 tRNA (Uracil-5-)-methyltransferase CH54_RS19920 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS19925 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS19930 PF00528 Binding-protein-dependent transport system inner membrane component CH54_RS19935 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_RS19940 PF00005 ABC transporter CH54_RS19945 PF12883 Protein of unknown function (DUF3828) CH54_RS19950 PF01370 NAD dependent epimerase/dehydratase family CH54_RS19955 PF13460 NAD(P)H-binding CH54_RS19955 PF11066 Protein of unknown function (DUF2867) CH54_RS19960 PF01212 Beta-eliminating lyase CH54_RS19970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_RS19970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_RS19970 PF00205 Thiamine pyrophosphate enzyme, central domain CH54_RS19975 PF00175 Oxidoreductase NAD-binding domain CH54_RS19975 PF00111 2Fe-2S iron-sulfur cluster binding domain CH54_RS19975 PF00970 Oxidoreductase FAD-binding domain CH54_RS19980 PF03063 Prismane/CO dehydrogenase family CH54_RS19985 PF03956 Lysine exporter LysO CH54_RS19990 PF11398 Protein of unknown function (DUF2813) CH54_RS19995 PF04393 Protein of unknown function (DUF535) CH54_RS20000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_RS20005 PF02687 FtsX-like permease family CH54_RS20005 PF00005 ABC transporter CH54_RS20005 PF12704 MacB-like periplasmic core domain CH54_RS20010 PF00313 'Cold-shock' DNA-binding domain CH54_RS20015 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH54_RS20020 PF07724 AAA domain (Cdc48 subfamily) CH54_RS20020 PF17871 AAA lid domain CH54_RS20020 PF02861 Clp amino terminal domain, pathogenicity island component CH54_RS20020 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_RS20020 PF00004 ATPase family associated with various cellular activities (AAA) CH54_RS20025 PF01176 Translation initiation factor 1A / IF-1 CH54_RS20030 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH54_RS20035 PF00664 ABC transporter transmembrane region CH54_RS20035 PF00005 ABC transporter CH54_RS20040 PF00664 ABC transporter transmembrane region CH54_RS20040 PF00005 ABC transporter CH54_RS20045 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_RS20050 PF01037 Lrp/AsnC ligand binding domain CH54_RS20055 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH54_RS20055 PF01580 FtsK/SpoIIIE family CH54_RS20055 PF09397 Ftsk gamma domain CH54_RS20055 PF17854 FtsK alpha domain CH54_RS20060 PF03548 Outer membrane lipoprotein carrier protein LolA CH54_RS20065 PF00004 ATPase family associated with various cellular activities (AAA) CH54_RS20065 PF16193 AAA C-terminal domain CH54_RS20065 PF12002 MgsA AAA+ ATPase C terminal CH54_RS20070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH54_RS20070 PF02403 Seryl-tRNA synthetase N-terminal domain CH54_RS20075 PF07690 Major Facilitator Superfamily CH54_RS20080 PF04055 Radical SAM superfamily CH54_RS20085 PF02901 Pyruvate formate lyase-like CH54_RS20085 PF01228 Glycine radical CH54_RS20090 PF01226 Formate/nitrite transporter CH54_RS20095 PF18381 YcaO cyclodehydratase C-terminal domain CH54_RS20095 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH54_RS20100 PF17763 Glutaminase/Asparaginase C-terminal domain CH54_RS20100 PF00710 Asparaginase, N-terminal CH54_RS20105 PF04239 Protein of unknown function (DUF421) CH54_RS20110 PF00266 Aminotransferase class-V CH54_RS20115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH54_RS20120 PF02224 Cytidylate kinase CH54_RS20125 PF00575 S1 RNA binding domain CH54_RS20130 PF00216 Bacterial DNA-binding protein CH54_RS20135 PF03772 Competence protein CH54_RS20135 PF00753 Metallo-beta-lactamase superfamily CH54_RS20140 PF00664 ABC transporter transmembrane region CH54_RS20140 PF00005 ABC transporter CH54_RS20145 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH54_RS20150 PF07063 Domain of unknown function (DUF1338) CH54_RS20155 PF00313 'Cold-shock' DNA-binding domain CH54_RS20160 PF03966 Trm112p-like protein CH54_RS20165 PF02348 Cytidylyltransferase CH54_RS20170 PF01636 Phosphotransferase enzyme family CH54_RS20175 PF02698 DUF218 domain CH54_RS20180 PF13847 Methyltransferase domain CH54_RS20185 PF17193 MukF C-terminal domain CH54_RS20185 PF17192 MukF middle domain CH54_RS20185 PF03882 MukF winged-helix domain CH54_RS20190 PF04288 MukE-like family CH54_RS20195 PF16330 MukB hinge domain CH54_RS20195 PF04310 MukB N-terminal CH54_RS20200 PF03734 L,D-transpeptidase catalytic domain CH54_RS20200 PF01471 Putative peptidoglycan binding domain CH54_RS20205 PF05951 Bacterial protein of unknown function (DUF882) CH54_RS20210 PF00753 Metallo-beta-lactamase superfamily CH54_RS20215 PF12792 CSS motif domain associated with EAL CH54_RS20215 PF00563 EAL domain CH54_RS20220 PF00155 Aminotransferase class I and II CH54_RS20225 PF00267 Gram-negative porin CH54_RS20230 PF00152 tRNA synthetases class II (D, K and N) CH54_RS20230 PF01336 OB-fold nucleic acid binding domain CH54_RS20235 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH54_RS20235 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH54_RS20240 PF01433 Peptidase family M1 domain CH54_RS20240 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH54_RS20240 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH54_RS20245 PF01180 Dihydroorotate dehydrogenase CH54_RS20250 PF07126 Cell-division protein ZapC CH54_RS20255 PF03473 MOSC domain CH54_RS20255 PF00111 2Fe-2S iron-sulfur cluster binding domain CH54_RS20255 PF03476 MOSC N-terminal beta barrel domain CH54_RS20290 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH54_RS20290 PF03212 Pertactin CH54_RS20290 PF03797 Autotransporter beta-domain CH54_RS20315 PF00182 Chitinase class I CH54_RS20325 PF06932 Protein of unknown function (DUF1283)