CH54_RS00005	PF01170	Putative RNA methylase family UPF0020
CH54_RS00005	PF02926	THUMP domain
CH54_RS00010	PF00005	ABC transporter
CH54_RS00010	PF12848	ABC transporter
CH54_RS00010	PF16326	CH54_RS00010
CH54_RS00015	PF04403	CH54_RS00015
CH54_RS00020	PF02470	CH54_RS00020
CH54_RS00025	PF03886	Protein of unknown function (DUF330)
CH54_RS00030	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH54_RS00030	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH54_RS00035	PF01638	HxlR-like helix-turn-helix
CH54_RS00040	PF07977	FabA-like domain
CH54_RS00045	PF05362	Lon protease (S16) C-terminal proteolytic domain
CH54_RS00045	PF13654	AAA domain
CH54_RS00050	PF06303	Organiser of macrodomain of Terminus of chromosome
CH54_RS00055	PF00691	OmpA family
CH54_RS00055	PF01389	OmpA-like transmembrane domain
CH54_RS00060	PF03846	Cell division inhibitor SulA
CH54_RS00065	PF04993	TfoX N-terminal domain
CH54_RS00065	PF04994	TfoX C-terminal domain
CH54_RS00070	PF12805	CH54_RS00070
CH54_RS00070	PF13515	CH54_RS00070
CH54_RS00075	PF03733	CH54_RS00075
CH54_RS00080	PF00580	UvrD/REP helicase N-terminal domain
CH54_RS00080	PF12462	CH54_RS00080
CH54_RS00080	PF13361	UvrD-like helicase C-terminal domain
CH54_RS00085	PF02142	MGS-like domain
CH54_RS00090	PF09829	CH54_RS00090
CH54_RS00095	PF13380	CoA binding domain
CH54_RS00100	PF08755	Hemimethylated DNA-binding protein YccV like
CH54_RS00105	PF10672	S-adenosylmethionine-dependent methyltransferase
CH54_RS00115	PF00708	Acylphosphatase
CH54_RS00120	PF04358	DsrC like protein
CH54_RS00130	PF01867	CRISPR associated protein Cas1
CH54_RS00140	PF09611	CH54_RS00140
CH54_RS00145	PF09614	CH54_RS00145
CH54_RS00150	PF09615	CH54_RS00150
CH54_RS00155	PF09618	CRISPR-associated protein (Cas_Csy4)
CH54_RS00160	PF02335	Cytochrome c552
CH54_RS00165	PF13435	Cytochrome c554 and c-prime
CH54_RS00170	PF12800	4Fe-4S binding domain
CH54_RS00170	PF13247	4Fe-4S dicluster domain
CH54_RS00175	PF03916	CH54_RS00175
CH54_RS00180	PF01578	CH54_RS00180
CH54_RS00180	PF16327	CH54_RS00180
CH54_RS00185	PF08534	Redoxin
CH54_RS00190	PF03918	Cytochrome C biogenesis protein
CH54_RS00200	PF00892	EamA-like transporter family
CH54_RS00205	PF00072	Response regulator receiver domain
CH54_RS00205	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS00210	PF00999	Sodium/hydrogen exchanger family
CH54_RS00210	PF02080	TrkA-C domain
CH54_RS00210	PF03471	Transporter associated domain
CH54_RS00220	PF01757	CH54_RS00220
CH54_RS00225	PF04349	Periplasmic glucan biosynthesis protein, MdoG
CH54_RS00230	PF00535	Glycosyl transferase family 2
CH54_RS00235	PF07119	CH54_RS00235
CH54_RS00250	PF00854	POT family
CH54_RS00255	PF07690	Major Facilitator Superfamily
CH54_RS00260	PF07681	CH54_RS00260
CH54_RS00265	PF03279	CH54_RS00265
CH54_RS00275	PF00581	Rhodanese-like domain
CH54_RS00275	PF12368	CH54_RS00275
CH54_RS00280	PF01594	CH54_RS00280
CH54_RS00285	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS00290	PF01266	FAD dependent oxidoreductase
CH54_RS00295	PF13991	CH54_RS00295
CH54_RS00300	PF06183	DinI-like family
CH54_RS00305	PF01979	Amidohydrolase family
CH54_RS00315	PF03992	Antibiotic biosynthesis monooxygenase
CH54_RS00320	PF00575	S1 RNA binding domain
CH54_RS00320	PF10150	Ribonuclease E/G family
CH54_RS00320	PF12111	Polyribonucleotide phosphorylase C terminal
CH54_RS00325	PF00849	RNA pseudouridylate synthase
CH54_RS00325	PF01479	S4 domain
CH54_RS00330	PF02545	Maf-like protein
CH54_RS00335	PF02620	CH54_RS00335
CH54_RS00340	PF01783	Ribosomal L32p protein family
CH54_RS00345	PF02504	Fatty acid synthesis protein
CH54_RS00350	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
CH54_RS00350	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
CH54_RS00355	PF00698	Acyl transferase domain
CH54_RS00360	PF13561	Enoyl-(Acyl carrier protein) reductase
CH54_RS00365	PF00550	Phosphopantetheine attachment site
CH54_RS00370	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH54_RS00370	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH54_RS00375	PF01063	Aminotransferase class IV
CH54_RS00380	PF02618	YceG-like family
CH54_RS00385	PF02223	Thymidylate kinase
CH54_RS00390	PF09115	DNA polymerase III, delta subunit, C terminal
CH54_RS00390	PF13177	DNA polymerase III, delta subunit
CH54_RS00395	PF01026	TatD related DNase
CH54_RS00400	PF00367	phosphotransferase system, EIIB
CH54_RS00400	PF02378	Phosphotransferase system, EIIC
CH54_RS00405	PF13650	Aspartyl protease
CH54_RS00410	PF00005	ABC transporter
CH54_RS00410	PF00664	ABC transporter transmembrane region
CH54_RS00410	PF03412	Peptidase C39 family
CH54_RS00415	PF13437	HlyD family secretion protein
CH54_RS00420	PF04055	Radical SAM superfamily
CH54_RS00420	PF13394	4Fe-4S single cluster domain
CH54_RS00425	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS00425	PF12793	CH54_RS00425
CH54_RS00430	PF08501	Shikimate dehydrogenase substrate binding domain
CH54_RS00435	PF01230	HIT domain
CH54_RS00440	PF07233	Protein of unknown function (DUF1425)
CH54_RS00445	PF13036	Protein of unknown function (DUF3897)
CH54_RS00450	PF01636	Phosphotransferase enzyme family
CH54_RS00455	PF00933	Glycosyl hydrolase family 3 N terminal domain
CH54_RS00460	PF05728	Uncharacterised protein family (UPF0227)
CH54_RS00465	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS00470	PF05433	CH54_RS00470
CH54_RS00475	PF00270	DEAD/DEAH box helicase
CH54_RS00475	PF00271	Helicase conserved C-terminal domain
CH54_RS00475	PF02559	CarD-like/TRCF domain
CH54_RS00475	PF03461	TRCF domain
CH54_RS00480	PF02687	CH54_RS00480
CH54_RS00480	PF12704	MacB-like periplasmic core domain
CH54_RS00485	PF00005	ABC transporter
CH54_RS00490	PF02687	CH54_RS00490
CH54_RS00490	PF12704	MacB-like periplasmic core domain
CH54_RS00495	PF00480	ROK family
CH54_RS00500	PF02146	Sir2 family
CH54_RS00505	PF01546	Peptidase family M20/M25/M40
CH54_RS00505	PF07687	Peptidase dimerisation domain
CH54_RS00510	PF08007	Cupin superfamily protein
CH54_RS00515	PF00672	HAMP domain
CH54_RS00515	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS00515	PF08918	PhoQ Sensor
CH54_RS00520	PF00072	Response regulator receiver domain
CH54_RS00520	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS00525	PF13505	Outer membrane protein beta-barrel domain
CH54_RS00530	PF00206	Lyase
CH54_RS00530	PF08328	Adenylosuccinate lyase C-terminal
CH54_RS00535	PF04356	Protein of unknown function (DUF489)
CH54_RS00540	PF03054	tRNA methyl transferase
CH54_RS00545	PF00293	NUDIX domain
CH54_RS00550	PF00849	RNA pseudouridylate synthase
CH54_RS00555	PF00180	Isocitrate/isopropylmalate dehydrogenase
CH54_RS00560	PF00535	Glycosyl transferase family 2
CH54_RS00565	PF04932	CH54_RS00565
CH54_RS00570	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS00570	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH54_RS00580	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH54_RS00580	PF00672	HAMP domain
CH54_RS00580	PF08447	PAS fold
CH54_RS00585	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CH54_RS00585	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
CH54_RS00590	PF01965	DJ-1/PfpI family
CH54_RS00590	PF12833	Helix-turn-helix domain
CH54_RS00595	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH54_RS00600	PF05368	NmrA-like family
CH54_RS00605	PF01638	HxlR-like helix-turn-helix
CH54_RS00610	PF03795	YCII-related domain
CH54_RS00620	PF07007	Protein of unknown function (DUF1311)
CH54_RS00625	PF06411	HdeA/HdeB family
CH54_RS00630	PF00990	GGDEF domain
CH54_RS00630	PF08447	PAS fold
CH54_RS00630	PF13426	PAS domain
CH54_RS00635	PF01163	RIO1 family
CH54_RS00640	PF00005	ABC transporter
CH54_RS00640	PF00664	ABC transporter transmembrane region
CH54_RS00645	PF13673	Acetyltransferase (GNAT) domain
CH54_RS00650	PF13520	Amino acid permease
CH54_RS00665	PF12833	Helix-turn-helix domain
CH54_RS00675	PF10964	CH54_RS00675
CH54_RS00680	PF13996	CH54_RS00680
CH54_RS00685	PF13974	CH54_RS00685
CH54_RS00690	PF10765	Protein of unknown function (DUF2591)
CH54_RS00695	PF13269	CH54_RS00695
CH54_RS00700	PF00324	Amino acid permease
CH54_RS00705	PF07017	Antimicrobial peptide resistance and lipid A acylation protein PagP
CH54_RS00710	PF10736	CH54_RS00710
CH54_RS00715	PF00313	'Cold-shock' DNA-binding domain
CH54_RS00720	PF02578	Multi-copper polyphenol oxidoreductase laccase
CH54_RS00725	PF00905	Penicillin binding protein transpeptidase domain
CH54_RS00725	PF03717	Penicillin-binding Protein dimerisation domain
CH54_RS00730	PF13847	Methyltransferase domain
CH54_RS00740	PF00989	PAS fold
CH54_RS00740	PF00990	GGDEF domain
CH54_RS00740	PF08448	PAS fold
CH54_RS00740	PF13426	PAS domain
CH54_RS00745	PF00593	TonB dependent receptor
CH54_RS00745	PF07715	TonB-dependent Receptor Plug Domain
CH54_RS00750	PF02659	CH54_RS00750
CH54_RS00755	PF06173	CH54_RS00755
CH54_RS00760	PF03613	CH54_RS00760
CH54_RS00765	PF03609	CH54_RS00765
CH54_RS00770	PF03610	PTS system fructose IIA component
CH54_RS00770	PF03830	PTS system sorbose subfamily IIB component
CH54_RS00775	PF00571	CBS domain
CH54_RS00775	PF03471	Transporter associated domain
CH54_RS00775	PF03741	CH54_RS00775
CH54_RS00780	PF03313	CH54_RS00780
CH54_RS00780	PF03315	Serine dehydratase beta chain
CH54_RS00785	PF00293	NUDIX domain
CH54_RS00790	PF00425	chorismate binding enzyme
CH54_RS00790	PF04715	Anthranilate synthase component I, N terminal region
CH54_RS00795	PF03701	CH54_RS00795
CH54_RS00800	PF02222	ATP-grasp domain
CH54_RS00805	PF00270	DEAD/DEAH box helicase
CH54_RS00805	PF00271	Helicase conserved C-terminal domain
CH54_RS00805	PF03880	DbpA RNA binding domain
CH54_RS00810	PF07130	YebG protein
CH54_RS00815	PF04266	ASCH domain
CH54_RS00820	PF13995	YebF-like protein
CH54_RS00825	PF00326	Prolyl oligopeptidase family
CH54_RS00825	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
CH54_RS00830	PF00929	Exonuclease
CH54_RS00835	PF00561	alpha/beta hydrolase fold
CH54_RS00840	PF06440	DNA polymerase III, theta subunit
CH54_RS00845	PF00210	Ferritin-like domain
CH54_RS00850	PF04234	CopC domain
CH54_RS00855	PF05425	CH54_RS00855
CH54_RS00860	PF10709	CH54_RS00860
CH54_RS00870	PF05016	Plasmid stabilisation system protein
CH54_RS00875	PF04221	RelB antitoxin
CH54_RS00880	PF00144	Beta-lactamase
CH54_RS00885	PF00849	RNA pseudouridylate synthase
CH54_RS00885	PF01479	S4 domain
CH54_RS00890	PF03616	CH54_RS00890
CH54_RS00895	PF00665	Integrase core domain
CH54_RS00895	PF13276	CH54_RS00895
CH54_RS00900	PF01527	Transposase
CH54_RS00910	PF00892	EamA-like transporter family
CH54_RS00920	PF00924	Mechanosensitive ion channel
CH54_RS00925	PF01734	Patatin-like phospholipase
CH54_RS00935	PF04266	ASCH domain
CH54_RS00940	PF07351	CH54_RS00940
CH54_RS00945	PF00989	PAS fold
CH54_RS00945	PF00990	GGDEF domain
CH54_RS00945	PF08447	PAS fold
CH54_RS00945	PF08448	PAS fold
CH54_RS00950	PF05229	CH54_RS00950
CH54_RS00955	PF00577	Outer membrane usher protein
CH54_RS00955	PF13953	PapC C-terminal domain
CH54_RS00960	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH54_RS00965	PF05229	CH54_RS00965
CH54_RS00970	PF05229	CH54_RS00970
CH54_RS00975	PF05229	CH54_RS00975
CH54_RS00980	PF07690	Major Facilitator Superfamily
CH54_RS00985	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS00985	PF03466	LysR substrate binding domain
CH54_RS00990	PF02470	CH54_RS00990
CH54_RS00995	PF04403	CH54_RS00995
CH54_RS01000	PF13185	GAF domain
CH54_RS01005	PF04352	ProQ/FINO family
CH54_RS01010	PF00595	PDZ domain (Also known as DHR or GLGF)
CH54_RS01010	PF03572	Peptidase family S41
CH54_RS01010	PF11818	CH54_RS01010
CH54_RS01015	PF01435	Peptidase family M48
CH54_RS01020	PF01609	Transposase DDE domain
CH54_RS01025	PF07690	Major Facilitator Superfamily
CH54_RS01030	PF14583	Oligogalacturonate lyase
CH54_RS01035	PF01614	Bacterial transcriptional regulator
CH54_RS01035	PF09339	IclR helix-turn-helix domain
CH54_RS01040	PF01471	Putative peptidoglycan binding domain
CH54_RS01040	PF01510	N-acetylmuramoyl-L-alanine amidase
CH54_RS01045	PF00375	Sodium:dicarboxylate symporter family
CH54_RS01050	PF04307	CH54_RS01050
CH54_RS01055	PF06178	Oligogalacturonate-specific porin protein (KdgM)
CH54_RS01060	PF13416	Bacterial extracellular solute-binding protein
CH54_RS01065	PF00005	ABC transporter
CH54_RS01065	PF08402	TOBE domain
CH54_RS01070	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS01075	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS01080	PF06917	Periplasmic pectate lyase
CH54_RS01085	PF13561	Enoyl-(Acyl carrier protein) reductase
CH54_RS01090	PF04962	KduI/IolB family
CH54_RS01095	PF07883	Cupin domain
CH54_RS01100	PF13419	Haloacid dehalogenase-like hydrolase
CH54_RS01105	PF14002	CH54_RS01105
CH54_RS01110	PF03881	Fructosamine kinase
CH54_RS01115	PF00950	CH54_RS01115
CH54_RS01120	PF00950	CH54_RS01120
CH54_RS01125	PF00005	ABC transporter
CH54_RS01130	PF01297	Periplasmic solute binding protein family
CH54_RS01135	PF01464	Transglycosylase SLT domain
CH54_RS01140	PF01914	CH54_RS01140
CH54_RS01150	PF12680	SnoaL-like domain
CH54_RS01165	PF04474	CH54_RS01165
CH54_RS01170	PF13619	CH54_RS01170
CH54_RS01175	PF00872	CH54_RS01175
CH54_RS01180	PF03797	Autotransporter beta-domain
CH54_RS01190	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CH54_RS01190	PF02824	TGS domain
CH54_RS01190	PF03129	Anticodon binding domain
CH54_RS01190	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CH54_RS01195	PF00707	Translation initiation factor IF-3, C-terminal domain
CH54_RS01200	PF01632	Ribosomal protein L35
CH54_RS01205	PF00453	Ribosomal protein L20
CH54_RS01210	PF01409	tRNA synthetases class II core domain (F)
CH54_RS01210	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
CH54_RS01215	PF01588	Putative tRNA binding domain
CH54_RS01215	PF03147	Ferredoxin-fold anticodon binding domain
CH54_RS01215	PF03483	B3/4 domain
CH54_RS01215	PF03484	tRNA synthetase B5 domain
CH54_RS01220	PF00216	Bacterial DNA-binding protein
CH54_RS01225	PF09831	CH54_RS01225
CH54_RS01230	PF10697	CH54_RS01230
CH54_RS01235	PF01032	FecCD transport family
CH54_RS01240	PF00255	Glutathione peroxidase
CH54_RS01245	PF00005	ABC transporter
CH54_RS01250	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CH54_RS01255	PF00535	Glycosyl transferase family 2
CH54_RS01260	PF00551	Formyl transferase
CH54_RS01260	PF01370	NAD dependent epimerase/dehydratase family
CH54_RS01260	PF02911	Formyl transferase, C-terminal domain
CH54_RS01265	PF01522	Polysaccharide deacetylase
CH54_RS01270	PF02366	CH54_RS01270
CH54_RS01275	PF00892	EamA-like transporter family
CH54_RS01285	PF00877	NlpC/P60 family
CH54_RS01290	PF03099	Biotin/lipoate A/B protein ligase family
CH54_RS01290	PF10437	Bacterial lipoate protein ligase C-terminus
CH54_RS01295	PF02696	CH54_RS01295
CH54_RS01300	PF01497	Periplasmic binding protein
CH54_RS01305	PF05171	Haemin-degrading HemS
CH54_RS01310	PF00593	TonB dependent receptor
CH54_RS01310	PF07715	TonB-dependent Receptor Plug Domain
CH54_RS01315	PF10636	Hemin uptake protein hemP
CH54_RS01320	PF00793	DAHP synthetase I family
CH54_RS01325	PF03618	CH54_RS01325
CH54_RS01330	PF00391	PEP-utilising enzyme, mobile domain
CH54_RS01330	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
CH54_RS01330	PF02896	PEP-utilising enzyme, TIM barrel domain
CH54_RS01335	PF01594	CH54_RS01335
CH54_RS01340	PF01565	FAD binding domain
CH54_RS01340	PF02913	FAD linked oxidases, C-terminal domain
CH54_RS01340	PF13183	4Fe-4S dicluster domain
CH54_RS01345	PF03061	Thioesterase superfamily
CH54_RS01350	PF01521	Iron-sulphur cluster biosynthesis
CH54_RS01355	PF01458	Uncharacterized protein family (UPF0051)
CH54_RS01360	PF00005	ABC transporter
CH54_RS01365	PF01458	Uncharacterized protein family (UPF0051)
CH54_RS01370	PF00266	Aminotransferase class-V
CH54_RS01375	PF02657	Fe-S metabolism associated domain
CH54_RS01380	PF03734	L,D-transpeptidase catalytic domain
CH54_RS01385	PF04728	Lipoprotein leucine-zipper
CH54_RS01390	PF00224	Pyruvate kinase, barrel domain
CH54_RS01390	PF02887	Pyruvate kinase, alpha/beta domain
CH54_RS01410	PF01554	MatE
CH54_RS01415	PF00677	Lumazine binding domain
CH54_RS01420	PF02353	Mycolic acid cyclopropane synthetase
CH54_RS01425	PF07690	Major Facilitator Superfamily
CH54_RS01430	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS01430	PF03466	LysR substrate binding domain
CH54_RS01435	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS01435	PF13377	Periplasmic binding protein-like domain
CH54_RS01440	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
CH54_RS01440	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
CH54_RS01445	PF00877	NlpC/P60 family
CH54_RS01450	PF00462	Glutaredoxin
CH54_RS01455	PF00929	Exonuclease
CH54_RS01460	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CH54_RS01465	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
CH54_RS01470	PF00440	Bacterial regulatory proteins, tetR family
CH54_RS01470	PF16925	CH54_RS01470
CH54_RS01475	PF00884	Sulfatase
CH54_RS01475	PF08019	CH54_RS01475
CH54_RS01480	PF06945	CH54_RS01480
CH54_RS01485	PF00248	Aldo/keto reductase family
CH54_RS01490	PF04632	CH54_RS01490
CH54_RS01495	PF13437	HlyD family secretion protein
CH54_RS01495	PF13533	Biotin-lipoyl like
CH54_RS01500	PF07869	CH54_RS01500
CH54_RS01505	PF01047	MarR family
CH54_RS01510	PF05433	CH54_RS01510
CH54_RS01515	PF03702	Uncharacterised protein family (UPF0075)
CH54_RS01520	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
CH54_RS01525	PF01243	Pyridoxamine 5'-phosphate oxidase
CH54_RS01525	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
CH54_RS01530	PF00579	tRNA synthetases class I (W and Y)
CH54_RS01530	PF01479	S4 domain
CH54_RS01535	PF08543	Phosphomethylpyrimidine kinase
CH54_RS01540	PF00043	Glutathione S-transferase, C-terminal domain
CH54_RS01540	PF02798	Glutathione S-transferase, N-terminal domain
CH54_RS01545	PF11656	CH54_RS01545
CH54_RS01550	PF06930	CH54_RS01550
CH54_RS01555	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CH54_RS01560	PF00854	POT family
CH54_RS01565	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS01565	PF03466	LysR substrate binding domain
CH54_RS01580	PF00005	ABC transporter
CH54_RS01585	PF00005	ABC transporter
CH54_RS01585	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH54_RS01590	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS01590	PF12911	CH54_RS01590
CH54_RS01595	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS01600	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS01605	PF02917	Pertussis toxin, subunit 1
CH54_RS01615	PF00158	Sigma-54 interaction domain
CH54_RS01615	PF02954	Bacterial regulatory protein, Fis family
CH54_RS01620	PF04012	CH54_RS01620
CH54_RS01625	PF06667	CH54_RS01625
CH54_RS01630	PF04024	CH54_RS01630
CH54_RS01635	PF09584	CH54_RS01635
CH54_RS01640	PF04317	CH54_RS01640
CH54_RS01645	PF05128	CH54_RS01645
CH54_RS01650	PF08808	CH54_RS01650
CH54_RS01655	PF09722	CH54_RS01655
CH54_RS01660	PF00158	Sigma-54 interaction domain
CH54_RS01660	PF13188	PAS domain
CH54_RS01665	PF08534	Redoxin
CH54_RS01670	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
CH54_RS01670	PF13378	Enolase C-terminal domain-like
CH54_RS01675	PF00246	Zinc carboxypeptidase
CH54_RS01680	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS01695	PF01544	CorA-like Mg2+ transporter protein
CH54_RS01700	PF01171	PP-loop family
CH54_RS01705	PF00388	Phosphatidylinositol-specific phospholipase C, X domain
CH54_RS01710	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
CH54_RS01710	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
CH54_RS01710	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH54_RS01710	PF10371	Domain of unknown function
CH54_RS01710	PF12838	4Fe-4S dicluster domain
CH54_RS01710	PF17147	CH54_RS01710
CH54_RS01715	PF00893	Small Multidrug Resistance protein
CH54_RS01720	PF02308	CH54_RS01720
CH54_RS01725	PF03891	CH54_RS01725
CH54_RS01730	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH54_RS01730	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH54_RS01735	PF11739	CH54_RS01735
CH54_RS01740	PF13617	CH54_RS01740
CH54_RS01745	PF07027	CH54_RS01745
CH54_RS01750	PF02525	Flavodoxin-like fold
CH54_RS01755	PF00270	DEAD/DEAH box helicase
CH54_RS01755	PF00271	Helicase conserved C-terminal domain
CH54_RS01755	PF04408	Helicase associated domain (HA2)
CH54_RS01755	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
CH54_RS01755	PF11898	CH54_RS01755
CH54_RS01760	PF05973	CH54_RS01760
CH54_RS01765	PF01381	Helix-turn-helix
CH54_RS01770	PF00089	Trypsin
CH54_RS01780	PF11391	CH54_RS01780
CH54_RS01785	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
CH54_RS01790	PF00672	HAMP domain
CH54_RS01790	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS01795	PF00072	Response regulator receiver domain
CH54_RS01795	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS01805	PF13520	Amino acid permease
CH54_RS01810	PF07338	Protein of unknown function (DUF1471)
CH54_RS01820	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
CH54_RS01820	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
CH54_RS01820	PF12769	Domain of unknown function (DUF3814)
CH54_RS01825	PF02233	NAD(P) transhydrogenase beta subunit
CH54_RS01830	PF00582	Universal stress protein family
CH54_RS01835	PF00027	Cyclic nucleotide-binding domain
CH54_RS01835	PF13545	Crp-like helix-turn-helix domain
CH54_RS01840	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
CH54_RS01840	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
CH54_RS01845	PF05013	N-formylglutamate amidohydrolase
CH54_RS01850	PF04463	CH54_RS01850
CH54_RS01855	PF06445	GyrI-like small molecule binding domain
CH54_RS01860	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS01860	PF03466	LysR substrate binding domain
CH54_RS01865	PF13561	Enoyl-(Acyl carrier protein) reductase
CH54_RS01870	PF00245	Alkaline phosphatase
CH54_RS01875	PF13208	CH54_RS01875
CH54_RS01875	PF15615	CH54_RS01875
CH54_RS01880	PF13419	Haloacid dehalogenase-like hydrolase
CH54_RS01885	PF13710	ACT domain
CH54_RS01890	PF00205	Thiamine pyrophosphate enzyme, central domain
CH54_RS01890	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH54_RS01890	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH54_RS01895	PF07313	Protein of unknown function (DUF1460)
CH54_RS01900	PF01510	N-acetylmuramoyl-L-alanine amidase
CH54_RS01905	PF10139	CH54_RS01905
CH54_RS01910	PF07520	CH54_RS01910
CH54_RS01920	PF01048	Phosphorylase superfamily
CH54_RS01920	PF10423	Bacterial AMP nucleoside phosphorylase N-terminus
CH54_RS01925	PF02274	Amidinotransferase
CH54_RS01930	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS01935	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS01940	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS01945	PF01037	AsnC family
CH54_RS01945	PF13412	Winged helix-turn-helix DNA-binding
CH54_RS01950	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
CH54_RS01955	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS01955	PF13308	YARHG domain
CH54_RS01960	PF00258	Flavodoxin
CH54_RS01960	PF00301	Rubredoxin
CH54_RS01960	PF00753	Metallo-beta-lactamase superfamily
CH54_RS01965	PF00158	Sigma-54 interaction domain
CH54_RS01965	PF01590	GAF domain
CH54_RS01970	PF02798	Glutathione S-transferase, N-terminal domain
CH54_RS01970	PF13410	Glutathione S-transferase, C-terminal domain
CH54_RS01975	PF07690	Major Facilitator Superfamily
CH54_RS01980	PF04443	CH54_RS01980
CH54_RS01985	PF05893	Acyl-CoA reductase (LuxC)
CH54_RS01990	PF00501	AMP-binding enzyme
CH54_RS01995	PF13673	Acetyltransferase (GNAT) domain
CH54_RS02010	PF07690	Major Facilitator Superfamily
CH54_RS02020	PF01022	Bacterial regulatory protein, arsR family
CH54_RS02025	PF02040	CH54_RS02025
CH54_RS02030	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CH54_RS02030	PF03960	ArsC family
CH54_RS02035	PF13610	CH54_RS02035
CH54_RS02040	PF00155	Aminotransferase class I and II
CH54_RS02045	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
CH54_RS02060	PF13610	CH54_RS02060
CH54_RS02065	PF00106	short chain dehydrogenase
CH54_RS02070	PF02694	CH54_RS02070
CH54_RS02075	PF06932	CH54_RS02075
CH54_RS02080	PF06649	CH54_RS02080
CH54_RS02085	PF00654	Voltage gated chloride channel
CH54_RS02090	PF13500	AAA domain
CH54_RS02095	PF00480	ROK family
CH54_RS02100	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS02100	PF03466	LysR substrate binding domain
CH54_RS02105	PF07690	Major Facilitator Superfamily
CH54_RS02110	PF13396	CH54_RS02110
CH54_RS02115	PF05472	DNA replication terminus site-binding protein (Ter protein)
CH54_RS02120	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS02120	PF08448	PAS fold
CH54_RS02125	PF00206	Lyase
CH54_RS02125	PF10415	Fumarase C C-terminus
CH54_RS02130	PF01238	Phosphomannose isomerase type I
CH54_RS02135	PF06097	CH54_RS02135
CH54_RS02140	PF05231	CH54_RS02140
CH54_RS02150	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS02150	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH54_RS02160	PF00367	phosphotransferase system, EIIB
CH54_RS02160	PF02378	Phosphotransferase system, EIIC
CH54_RS02165	PF00155	Aminotransferase class I and II
CH54_RS02170	PF00962	Adenosine/AMP deaminase
CH54_RS02175	PF13593	SBF-like CPA transporter family (DUF4137)
CH54_RS02180	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH54_RS02180	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
CH54_RS02185	PF02311	AraC-like ligand binding domain
CH54_RS02185	PF12833	Helix-turn-helix domain
CH54_RS02190	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS02190	PF08448	PAS fold
CH54_RS02195	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
CH54_RS02200	PF08448	PAS fold
CH54_RS02205	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH54_RS02210	PF02610	L-arabinose isomerase
CH54_RS02210	PF11762	L-arabinose isomerase C-terminal domain
CH54_RS02215	PF13175	AAA ATPase domain
CH54_RS02215	PF13304	AAA domain
CH54_RS02220	PF00005	ABC transporter
CH54_RS02220	PF00664	ABC transporter transmembrane region
CH54_RS02220	PF03412	Peptidase C39 family
CH54_RS02225	PF13437	HlyD family secretion protein
CH54_RS02225	PF13533	Biotin-lipoyl like
CH54_RS02230	PF00005	ABC transporter
CH54_RS02230	PF00664	ABC transporter transmembrane region
CH54_RS02235	PF01268	Formate--tetrahydrofolate ligase
CH54_RS02240	PF10754	CH54_RS02240
CH54_RS02245	PF02508	CH54_RS02245
CH54_RS02250	PF04060	Putative Fe-S cluster
CH54_RS02250	PF14697	4Fe-4S dicluster domain
CH54_RS02255	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CH54_RS02255	PF10531	SLBB domain
CH54_RS02255	PF13237	4Fe-4S dicluster domain
CH54_RS02255	PF13375	RnfC Barrel sandwich hybrid domain
CH54_RS02260	PF06445	GyrI-like small molecule binding domain
CH54_RS02260	PF12833	Helix-turn-helix domain
CH54_RS02265	PF03116	CH54_RS02265
CH54_RS02270	PF04205	FMN-binding domain
CH54_RS02275	PF02508	CH54_RS02275
CH54_RS02280	PF00633	Helix-hairpin-helix motif
CH54_RS02280	PF00730	HhH-GPD superfamily base excision DNA repair protein
CH54_RS02280	PF10576	Iron-sulfur binding domain of endonuclease III
CH54_RS02300	PF00384	Molybdopterin oxidoreductase
CH54_RS02300	PF01568	Molydopterin dinucleotide binding domain
CH54_RS02305	PF00575	S1 RNA binding domain
CH54_RS02305	PF00773	RNB domain
CH54_RS02305	PF08206	Ribonuclease B OB domain
CH54_RS02310	PF02554	CH54_RS02310
CH54_RS02310	PF13722	CH54_RS02310
CH54_RS02315	PF04328	CH54_RS02315
CH54_RS02320	PF00923	Transaldolase
CH54_RS02325	PF00455	CH54_RS02325
CH54_RS02325	PF08220	DeoR-like helix-turn-helix domain
CH54_RS02330	PF09932	CH54_RS02330
CH54_RS02335	PF00596	Class II Aldolase and Adducin N-terminal domain
CH54_RS02340	PF05433	CH54_RS02340
CH54_RS02345	PF01253	Translation initiation factor SUI1
CH54_RS02350	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
CH54_RS02355	PF07338	Protein of unknown function (DUF1471)
CH54_RS02365	PF13176	Tetratricopeptide repeat
CH54_RS02365	PF14559	Tetratricopeptide repeat
CH54_RS02370	PF06305	CH54_RS02370
CH54_RS02375	PF01569	PAP2 superfamily
CH54_RS02380	PF00925	GTP cyclohydrolase II
CH54_RS02385	PF00330	Aconitase family (aconitate hydratase)
CH54_RS02385	PF00694	Aconitase C-terminal domain
CH54_RS02400	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS02400	PF03466	LysR substrate binding domain
CH54_RS02405	PF01131	DNA topoisomerase
CH54_RS02405	PF01396	CH54_RS02405
CH54_RS02405	PF01751	Toprim domain
CH54_RS02405	PF08272	Topoisomerase I zinc-ribbon-like
CH54_RS02410	PF10692	Protein of unknown function (DUF2498)
CH54_RS02415	PF01343	Peptidase family S49
CH54_RS02415	PF08496	CH54_RS02415
CH54_RS02420	PF00106	short chain dehydrogenase
CH54_RS02425	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
CH54_RS02425	PF12557	Cob(I)alamin adenosyltransferase N terminal
CH54_RS02435	PF00849	RNA pseudouridylate synthase
CH54_RS02435	PF01479	S4 domain
CH54_RS02440	PF00589	Phage integrase family
CH54_RS02440	PF11646	Protein of unknown function DUF3258
CH54_RS02450	PF03864	Phage major capsid protein E
CH54_RS02455	PF01527	Transposase
CH54_RS02460	PF00665	Integrase core domain
CH54_RS02460	PF13276	CH54_RS02460
CH54_RS02470	PF00239	Resolvase, N terminal domain
CH54_RS02470	PF02796	Helix-turn-helix domain of resolvase
CH54_RS02480	PF05488	PAAR motif
CH54_RS02485	PF06836	CH54_RS02485
CH54_RS02490	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS02510	PF02369	Bacterial Ig-like domain (group 1)
CH54_RS02510	PF11924	Protein of unknown function (DUF3442)
CH54_RS02520	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS02525	PF03797	Autotransporter beta-domain
CH54_RS02525	PF13018	CH54_RS02525
CH54_RS02530	PF01300	Telomere recombination
CH54_RS02535	PF02811	PHP domain
CH54_RS02540	PF00425	chorismate binding enzyme
CH54_RS02540	PF04715	Anthranilate synthase component I, N terminal region
CH54_RS02545	PF00117	Glutamine amidotransferase class-I
CH54_RS02550	PF00591	Glycosyl transferase family, a/b domain
CH54_RS02550	PF02885	Glycosyl transferase family, helical bundle domain
CH54_RS02555	PF00218	Indole-3-glycerol phosphate synthase
CH54_RS02555	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
CH54_RS02560	PF00291	Pyridoxal-phosphate dependent enzyme
CH54_RS02565	PF00290	Tryptophan synthase alpha chain
CH54_RS02570	PF04972	BON domain
CH54_RS02575	PF03922	OmpW family
CH54_RS02580	PF06790	CH54_RS02580
CH54_RS02585	PF00916	CH54_RS02585
CH54_RS02585	PF01740	STAS domain
CH54_RS02590	PF04279	CH54_RS02590
CH54_RS02595	PF03061	Thioesterase superfamily
CH54_RS02600	PF03544	Gram-negative bacterial TonB protein C-terminal
CH54_RS02600	PF16031	CH54_RS02600
CH54_RS02605	PF03795	YCII-related domain
CH54_RS02610	PF13453	CH54_RS02610
CH54_RS02620	PF00563	EAL domain
CH54_RS02625	PF13091	PLD-like domain
CH54_RS02625	PF13396	CH54_RS02625
CH54_RS02630	PF04269	Protein of unknown function, DUF440
CH54_RS02635	PF00005	ABC transporter
CH54_RS02635	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH54_RS02640	PF00005	ABC transporter
CH54_RS02640	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH54_RS02645	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS02645	PF12911	CH54_RS02645
CH54_RS02650	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS02655	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS02660	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS02665	PF01914	CH54_RS02665
CH54_RS02670	PF00171	Aldehyde dehydrogenase family
CH54_RS02670	PF00465	Iron-containing alcohol dehydrogenase
CH54_RS02675	PF00665	Integrase core domain
CH54_RS02675	PF13276	CH54_RS02675
CH54_RS02680	PF01527	Transposase
CH54_RS02685	PF00265	Thymidine kinase
CH54_RS02695	PF00816	H-NS histone family
CH54_RS02700	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
CH54_RS02700	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
CH54_RS02700	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
CH54_RS02705	PF00072	Response regulator receiver domain
CH54_RS02710	PF01734	Patatin-like phospholipase
CH54_RS02715	PF00583	Acetyltransferase (GNAT) family
CH54_RS02720	PF02810	SEC-C motif
CH54_RS02725	PF00551	Formyl transferase
CH54_RS02725	PF01842	ACT domain
CH54_RS02740	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS02745	PF03372	Endonuclease/Exonuclease/phosphatase family
CH54_RS02750	PF00293	NUDIX domain
CH54_RS02755	PF07383	CH54_RS02755
CH54_RS02760	PF01131	DNA topoisomerase
CH54_RS02760	PF01751	Toprim domain
CH54_RS02765	PF00586	AIR synthase related protein, N-terminal domain
CH54_RS02765	PF02769	AIR synthase related protein, C-terminal domain
CH54_RS02770	PF00881	Nitroreductase family
CH54_RS02775	PF01343	Peptidase family S49
CH54_RS02780	PF00710	Asparaginase
CH54_RS02785	PF00857	Isochorismatase family
CH54_RS02790	PF07023	CH54_RS02790
CH54_RS02795	PF01641	SelR domain
CH54_RS02800	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CH54_RS02800	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
CH54_RS02805	PF01263	Aldose 1-epimerase
CH54_RS02810	PF06629	CH54_RS02810
CH54_RS02815	PF06798	CH54_RS02815
CH54_RS02815	PF08298	PrkA AAA domain
CH54_RS02820	PF04285	CH54_RS02820
CH54_RS02825	PF00892	EamA-like transporter family
CH54_RS02830	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS02830	PF03466	LysR substrate binding domain
CH54_RS02835	PF02678	Pirin
CH54_RS02835	PF05726	Pirin C-terminal cupin domain
CH54_RS02840	PF00563	EAL domain
CH54_RS02840	PF00990	GGDEF domain
CH54_RS02840	PF08447	PAS fold
CH54_RS02840	PF13185	GAF domain
CH54_RS02845	PF07690	Major Facilitator Superfamily
CH54_RS02850	PF00842	Alanine racemase, C-terminal domain
CH54_RS02850	PF01168	Alanine racemase, N-terminal domain
CH54_RS02855	PF01266	FAD dependent oxidoreductase
CH54_RS02860	PF04293	CH54_RS02860
CH54_RS02865	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS02865	PF07840	FadR C-terminal domain
CH54_RS02870	PF06450	CH54_RS02870
CH54_RS02875	PF02600	Disulfide bond formation protein DsbB
CH54_RS02880	PF00132	Bacterial transferase hexapeptide (six repeats)
CH54_RS02880	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
CH54_RS02890	PF03692	CH54_RS02890
CH54_RS02895	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CH54_RS02900	PF13406	Transglycosylase SLT domain
CH54_RS02905	PF05166	YcgL domain
CH54_RS02915	PF03775	Septum formation inhibitor MinC, C-terminal domain
CH54_RS02915	PF05209	Septum formation inhibitor MinC, N-terminal domain
CH54_RS02920	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CH54_RS02925	PF03776	Septum formation topological specificity factor MinE
CH54_RS02930	PF00570	HRDC domain
CH54_RS02930	PF01612	3'-5' exonuclease
CH54_RS02935	PF00501	AMP-binding enzyme
CH54_RS02935	PF13193	AMP-binding enzyme C-terminal domain
CH54_RS02940	PF03843	CH54_RS02940
CH54_RS02945	PF00814	Glycoprotease family
CH54_RS02950	PF00270	DEAD/DEAH box helicase
CH54_RS02950	PF06733	DEAD_2
CH54_RS02950	PF13307	Helicase C-terminal domain
CH54_RS02955	PF01042	Endoribonuclease L-PSP
CH54_RS02960	PF00893	Small Multidrug Resistance protein
CH54_RS02965	PF00893	Small Multidrug Resistance protein
CH54_RS02970	PF01081	KDPG and KHG aldolase
CH54_RS02975	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
CH54_RS02975	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
CH54_RS02980	PF01380	SIS domain
CH54_RS02980	PF01418	Helix-turn-helix domain, rpiR family
CH54_RS02985	PF00224	Pyruvate kinase, barrel domain
CH54_RS02985	PF02887	Pyruvate kinase, alpha/beta domain
CH54_RS02990	PF03279	CH54_RS02990
CH54_RS02995	PF01551	Peptidase family M23
CH54_RS02995	PF04225	Opacity-associated protein A LysM-like domain
CH54_RS02995	PF08525	CH54_RS02995
CH54_RS03000	PF01297	Periplasmic solute binding protein family
CH54_RS03005	PF00005	ABC transporter
CH54_RS03010	PF00950	CH54_RS03010
CH54_RS03015	PF00854	POT family
CH54_RS03020	PF05491	Holliday junction DNA helicase ruvB C-terminus
CH54_RS03020	PF05496	Holliday junction DNA helicase ruvB N-terminus
CH54_RS03025	PF01330	RuvA N terminal domain
CH54_RS03025	PF07499	RuvA, C-terminal domain
CH54_RS03025	PF14520	Helix-hairpin-helix domain
CH54_RS03030	PF02075	Crossover junction endodeoxyribonuclease RuvC
CH54_RS03035	PF01709	Transcriptional regulator
CH54_RS03040	PF00293	NUDIX domain
CH54_RS03045	PF00152	tRNA synthetases class II (D, K and N)
CH54_RS03045	PF01336	OB-fold nucleic acid binding domain
CH54_RS03045	PF02938	GAD domain
CH54_RS03050	PF00857	Isochorismatase family
CH54_RS03055	PF01904	Protein of unknown function DUF72
CH54_RS03060	PF01124	MAPEG family
CH54_RS03065	PF13649	Methyltransferase domain
CH54_RS03070	PF08003	Protein of unknown function (DUF1698)
CH54_RS03075	PF03932	CutC family
CH54_RS03080	PF06185	YecM protein
CH54_RS03085	PF00750	tRNA synthetases class I (R)
CH54_RS03085	PF03485	Arginyl tRNA synthetase N terminal domain
CH54_RS03085	PF05746	DALR anticodon binding domain
CH54_RS03090	PF03023	CH54_RS03090
CH54_RS03095	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH54_RS03100	PF04337	Protein of unknown function, DUF480
CH54_RS03105	PF13302	Acetyltransferase (GNAT) domain
CH54_RS03110	PF07690	Major Facilitator Superfamily
CH54_RS03115	PF07273	Protein of unknown function (DUF1439)
CH54_RS03120	PF02613	Nitrate reductase delta subunit
CH54_RS03125	PF02811	PHP domain
CH54_RS03130	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH54_RS03145	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH54_RS03155	PF00916	CH54_RS03155
CH54_RS03155	PF01740	STAS domain
CH54_RS03160	PF00793	DAHP synthetase I family
CH54_RS03165	PF13369	CH54_RS03165
CH54_RS03165	PF13371	Tetratricopeptide repeat
CH54_RS03170	PF04247	CH54_RS03170
CH54_RS03175	PF13847	Methyltransferase domain
CH54_RS03180	PF00472	RF-1 domain
CH54_RS03180	PF03462	PCRF domain
CH54_RS03185	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
CH54_RS03185	PF01488	Shikimate / quinate 5-dehydrogenase
CH54_RS03185	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
CH54_RS03190	PF03550	Outer membrane lipoprotein LolB
CH54_RS03195	PF00288	GHMP kinases N terminal domain
CH54_RS03195	PF08544	GHMP kinases C terminal
CH54_RS03200	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
CH54_RS03200	PF14572	Phosphoribosyl synthetase-associated domain
CH54_RS03205	PF10762	CH54_RS03205
CH54_RS03210	PF01195	Peptidyl-tRNA hydrolase
CH54_RS03220	PF01926	50S ribosome-binding GTPase
CH54_RS03220	PF06071	Protein of unknown function (DUF933)
CH54_RS03225	PF04237	YjbR
CH54_RS03230	PF01476	LysM domain
CH54_RS03230	PF01551	Peptidase family M23
CH54_RS03235	PF02502	Ribose/Galactose Isomerase
CH54_RS03235	PF12408	Ribose-5-phosphate isomerase
CH54_RS03240	PF09223	YodA lipocalin-like domain
CH54_RS03245	PF02653	CH54_RS03245
CH54_RS03250	PF00005	ABC transporter
CH54_RS03255	PF13407	Periplasmic binding protein domain
CH54_RS03260	PF05962	HutD
CH54_RS03265	PF01979	Amidohydrolase family
CH54_RS03270	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS03270	PF07702	UTRA domain
CH54_RS03275	PF01979	Amidohydrolase family
CH54_RS03280	PF05013	N-formylglutamate amidohydrolase
CH54_RS03285	PF00267	Gram-negative porin
CH54_RS03290	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
CH54_RS03295	PF04996	Succinylarginine dihydrolase
CH54_RS03300	PF00171	Aldehyde dehydrogenase family
CH54_RS03305	PF04958	Arginine N-succinyltransferase beta subunit
CH54_RS03310	PF00202	Aminotransferase class-III
CH54_RS03315	PF00155	Aminotransferase class I and II
CH54_RS03315	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS03320	PF01654	CH54_RS03320
CH54_RS03325	PF02322	CH54_RS03325
CH54_RS03330	PF00672	HAMP domain
CH54_RS03330	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS03330	PF07730	Histidine kinase
CH54_RS03330	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
CH54_RS03335	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS03335	PF03466	LysR substrate binding domain
CH54_RS03340	PF04954	Siderophore-interacting protein
CH54_RS03340	PF08021	Siderophore-interacting FAD-binding domain
CH54_RS03345	PF01699	Sodium/calcium exchanger protein
CH54_RS03350	PF02562	PhoH-like protein
CH54_RS03360	PF13302	Acetyltransferase (GNAT) domain
CH54_RS03365	PF13994	CH54_RS03365
CH54_RS03370	PF00535	Glycosyl transferase family 2
CH54_RS03375	PF01522	Polysaccharide deacetylase
CH54_RS03375	PF14883	Hypothetical glycosyl hydrolase family 13
CH54_RS03385	PF00557	Metallopeptidase family M24
CH54_RS03385	PF01321	Creatinase/Prolidase N-terminal domain
CH54_RS03390	PF06276	Ferric iron reductase FhuF-like transporter
CH54_RS03390	PF11575	CH54_RS03390
CH54_RS03395	PF01411	tRNA synthetases class II (A)
CH54_RS03395	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CH54_RS03400	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS03400	PF03466	LysR substrate binding domain
CH54_RS03405	PF03848	Tellurite resistance protein TehB
CH54_RS03405	PF09313	Domain of unknown function (DUF1971)
CH54_RS03410	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
CH54_RS03415	PF08534	Redoxin
CH54_RS03420	PF00005	ABC transporter
CH54_RS03425	PF02687	CH54_RS03425
CH54_RS03425	PF12704	MacB-like periplasmic core domain
CH54_RS03430	PF02687	CH54_RS03430
CH54_RS03430	PF12704	MacB-like periplasmic core domain
CH54_RS03435	PF04945	YHS domain
CH54_RS03435	PF10080	CH54_RS03435
CH54_RS03440	PF10634	Fe2+ transport protein
CH54_RS03445	PF03239	CH54_RS03445
CH54_RS03455	PF01804	Penicillin amidase
CH54_RS03460	PF07690	Major Facilitator Superfamily
CH54_RS03465	PF04960	Glutaminase
CH54_RS03470	PF01261	Xylose isomerase-like TIM barrel
CH54_RS03475	PF00596	Class II Aldolase and Adducin N-terminal domain
CH54_RS03480	PF07005	Protein of unknown function, DUF1537
CH54_RS03480	PF17042	CH54_RS03480
CH54_RS03485	PF00455	CH54_RS03485
CH54_RS03485	PF08220	DeoR-like helix-turn-helix domain
CH54_RS03490	PF00989	PAS fold
CH54_RS03490	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS03490	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
CH54_RS03490	PF17203	CH54_RS03490
CH54_RS03495	PF00072	Response regulator receiver domain
CH54_RS03500	PF03390	CH54_RS03500
CH54_RS03505	PF00324	Amino acid permease
CH54_RS03510	PF00583	Acetyltransferase (GNAT) family
CH54_RS03515	PF05954	Phage late control gene D protein (GPD)
CH54_RS03520	PF04606	CH54_RS03520
CH54_RS03540	PF01066	CDP-alcohol phosphatidyltransferase
CH54_RS03545	PF01541	GIY-YIG catalytic domain
CH54_RS03545	PF02151	UvrB/uvrC motif
CH54_RS03545	PF08459	UvrC Helix-hairpin-helix N-terminal
CH54_RS03545	PF14520	Helix-hairpin-helix domain
CH54_RS03550	PF00072	Response regulator receiver domain
CH54_RS03550	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS03555	PF10769	CH54_RS03555
CH54_RS03570	PF00128	Alpha amylase, catalytic domain
CH54_RS03585	PF05163	DinB family
CH54_RS03590	PF04138	CH54_RS03590
CH54_RS03595	PF00535	Glycosyl transferase family 2
CH54_RS03600	PF14264	CH54_RS03600
CH54_RS03620	PF00324	Amino acid permease
CH54_RS03625	PF01344	Kelch motif
CH54_RS03630	PF01381	Helix-turn-helix
CH54_RS03630	PF13239	CH54_RS03630
CH54_RS03635	PF13693	Winged helix-turn-helix DNA-binding
CH54_RS03640	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS03650	PF03358	NADPH-dependent FMN reductase
CH54_RS03655	PF04261	Dyp-type peroxidase family
CH54_RS03660	PF09375	Imelysin
CH54_RS03660	PF13473	Cupredoxin-like domain
CH54_RS03665	PF03239	CH54_RS03665
CH54_RS03675	PF00474	Sodium:solute symporter family
CH54_RS03680	PF00171	Aldehyde dehydrogenase family
CH54_RS03680	PF01619	Proline dehydrogenase
CH54_RS03680	PF14850	DNA-binding domain of Proline dehydrogenase
CH54_RS03695	PF00005	ABC transporter
CH54_RS03700	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS03705	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS03710	PF00291	Pyridoxal-phosphate dependent enzyme
CH54_RS03715	PF02899	Phage integrase, N-terminal SAM-like domain
CH54_RS03720	PF04539	Sigma-70 region 3
CH54_RS03720	PF04542	Sigma-70 region 2
CH54_RS03720	PF04545	Sigma-70, region 4
CH54_RS03725	PF00669	Bacterial flagellin N-terminal helical region
CH54_RS03725	PF00700	Bacterial flagellin C-terminal helical region
CH54_RS03730	PF02465	CH54_RS03730
CH54_RS03730	PF07195	CH54_RS03730
CH54_RS03735	PF02561	Flagellar protein FliS
CH54_RS03740	PF05400	Flagellar protein FliT
CH54_RS03745	PF12833	Helix-turn-helix domain
CH54_RS03750	PF13487	HD domain
CH54_RS03755	PF00730	HhH-GPD superfamily base excision DNA repair protein
CH54_RS03765	PF02049	CH54_RS03765
CH54_RS03770	PF01514	Secretory protein of YscJ/FliF family
CH54_RS03770	PF08345	CH54_RS03770
CH54_RS03775	PF01706	FliG C-terminal domain
CH54_RS03775	PF14841	FliG middle domain
CH54_RS03775	PF14842	FliG N-terminal domain
CH54_RS03780	PF02108	CH54_RS03780
CH54_RS03785	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH54_RS03790	PF02050	Flagellar FliJ protein
CH54_RS03795	PF02120	Flagellar hook-length control protein FliK
CH54_RS03800	PF03748	CH54_RS03800
CH54_RS03805	PF01052	Surface presentation of antigens (SPOA)
CH54_RS03805	PF02154	Flagellar motor switch protein FliM
CH54_RS03810	PF01052	Surface presentation of antigens (SPOA)
CH54_RS03810	PF16973	CH54_RS03810
CH54_RS03815	PF04347	CH54_RS03815
CH54_RS03820	PF00813	CH54_RS03820
CH54_RS03825	PF01313	CH54_RS03825
CH54_RS03830	PF01311	CH54_RS03830
CH54_RS03835	PF00669	Bacterial flagellin N-terminal helical region
CH54_RS03840	PF00460	Flagella basal body rod protein
CH54_RS03840	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH54_RS03845	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
CH54_RS03845	PF10135	CH54_RS03845
CH54_RS03850	PF02119	CH54_RS03850
CH54_RS03855	PF02107	CH54_RS03855
CH54_RS03860	PF00460	Flagella basal body rod protein
CH54_RS03860	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH54_RS03865	PF00460	Flagella basal body rod protein
CH54_RS03865	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH54_RS03870	PF00460	Flagella basal body rod protein
CH54_RS03870	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH54_RS03870	PF07559	Flagellar basal body protein FlaE
CH54_RS03875	PF03963	CH54_RS03875
CH54_RS03875	PF13860	FlgD Ig-like domain
CH54_RS03875	PF13861	FlgD Tudor-like domain
CH54_RS03880	PF00460	Flagella basal body rod protein
CH54_RS03880	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH54_RS03885	PF00460	Flagella basal body rod protein
CH54_RS03890	PF13144	SAF-like
CH54_RS03895	PF04316	Anti-sigma-28 factor, FlgM
CH54_RS03900	PF05130	FlgN protein
CH54_RS03905	PF06366	CH54_RS03905
CH54_RS03910	PF00771	FHIPEP family
CH54_RS03915	PF01312	FlhB HrpN YscU SpaS Family
CH54_RS03920	PF00082	Subtilase family
CH54_RS03925	PF04344	Chemotaxis phosphatase, CheZ
CH54_RS03930	PF00072	Response regulator receiver domain
CH54_RS03935	PF00072	Response regulator receiver domain
CH54_RS03935	PF01339	CheB methylesterase
CH54_RS03940	PF01739	CheR methyltransferase, SAM binding domain
CH54_RS03940	PF03705	CheR methyltransferase, all-alpha domain
CH54_RS03945	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH54_RS03945	PF00672	HAMP domain
CH54_RS03945	PF02203	Tar ligand binding domain homologue
CH54_RS03950	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH54_RS03950	PF00672	HAMP domain
CH54_RS03950	PF02203	Tar ligand binding domain homologue
CH54_RS03955	PF01584	CheW-like domain
CH54_RS03960	PF01584	CheW-like domain
CH54_RS03960	PF01627	Hpt domain
CH54_RS03960	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS03960	PF02895	Signal transducing histidine kinase, homodimeric domain
CH54_RS03960	PF09078	CheY binding
CH54_RS03965	PF00691	OmpA family
CH54_RS03965	PF13677	CH54_RS03965
CH54_RS03970	PF01618	CH54_RS03970
CH54_RS03975	PF05280	Flagellar transcriptional activator (FlhC)
CH54_RS03980	PF05247	Flagellar transcriptional activator (FlhD)
CH54_RS03985	PF00582	Universal stress protein family
CH54_RS03990	PF00122	E1-E2 ATPase
CH54_RS03990	PF00689	Cation transporting ATPase, C-terminus
CH54_RS03990	PF00690	Cation transporter/ATPase, N-terminus
CH54_RS03990	PF00702	haloacid dehalogenase-like hydrolase
CH54_RS03995	PF02308	CH54_RS03995
CH54_RS04000	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH54_RS04000	PF00672	HAMP domain
CH54_RS04000	PF02203	Tar ligand binding domain homologue
CH54_RS04005	PF10781	CH54_RS04005
CH54_RS04010	PF00313	'Cold-shock' DNA-binding domain
CH54_RS04015	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS04015	PF13377	Periplasmic binding protein-like domain
CH54_RS04020	PF00703	Glycosyl hydrolases family 2
CH54_RS04020	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
CH54_RS04020	PF02837	Glycosyl hydrolases family 2, sugar binding domain
CH54_RS04020	PF02929	Beta galactosidase small chain
CH54_RS04020	PF16353	CH54_RS04020
CH54_RS04025	PF00107	Zinc-binding dehydrogenase
CH54_RS04025	PF08240	Alcohol dehydrogenase GroES-like domain
CH54_RS04040	PF01037	AsnC family
CH54_RS04040	PF13412	Winged helix-turn-helix DNA-binding
CH54_RS04045	PF11004	CH54_RS04045
CH54_RS04050	PF14001	CH54_RS04050
CH54_RS04055	PF00328	Histidine phosphatase superfamily (branch 2)
CH54_RS04060	PF00483	Nucleotidyl transferase
CH54_RS04070	PF00782	Dual specificity phosphatase, catalytic domain
CH54_RS04070	PF14378	CH54_RS04070
CH54_RS04075	PF12146	Putative lysophospholipase
CH54_RS04075	PF12147	CH54_RS04075
CH54_RS04080	PF01553	Acyltransferase
CH54_RS04085	PF01148	Cytidylyltransferase family
CH54_RS04090	PF01066	CDP-alcohol phosphatidyltransferase
CH54_RS04095	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH54_RS04100	PF00577	Outer membrane usher protein
CH54_RS04100	PF13953	PapC C-terminal domain
CH54_RS04100	PF13954	PapC N-terminal domain
CH54_RS04105	PF06551	CH54_RS04105
CH54_RS04110	PF06551	CH54_RS04110
CH54_RS04115	PF01548	CH54_RS04115
CH54_RS04115	PF02371	CH54_RS04115
CH54_RS04120	PF06167	Glucose-regulated metallo-peptidase M90
CH54_RS04130	PF00849	RNA pseudouridylate synthase
CH54_RS04140	PF05118	Aspartyl/Asparaginyl beta-hydroxylase
CH54_RS04145	PF13505	Outer membrane protein beta-barrel domain
CH54_RS04150	PF01648	4'-phosphopantetheinyl transferase superfamily
CH54_RS04155	PF03480	Bacterial extracellular solute-binding protein, family 7
CH54_RS04160	PF04290	CH54_RS04160
CH54_RS04165	PF06808	CH54_RS04165
CH54_RS04170	PF00939	Sodium:sulfate symporter transmembrane region
CH54_RS04175	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
CH54_RS04180	PF03802	CH54_RS04180
CH54_RS04185	PF04223	Citrate lyase, alpha subunit (CitF)
CH54_RS04190	PF03328	HpcH/HpaI aldolase/citrate lyase family
CH54_RS04195	PF06857	CH54_RS04195
CH54_RS04200	PF08218	Citrate lyase ligase C-terminal domain
CH54_RS04205	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS04205	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
CH54_RS04205	PF17203	CH54_RS04205
CH54_RS04210	PF00072	Response regulator receiver domain
CH54_RS04210	PF12431	CH54_RS04210
CH54_RS04215	PF00072	Response regulator receiver domain
CH54_RS04215	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS04220	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS04220	PF05231	CH54_RS04220
CH54_RS04220	PF07730	Histidine kinase
CH54_RS04225	PF07690	Major Facilitator Superfamily
CH54_RS04230	PF13343	Bacterial extracellular solute-binding protein
CH54_RS04235	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS04240	PF00005	ABC transporter
CH54_RS04240	PF08402	TOBE domain
CH54_RS04250	PF00067	Cytochrome P450
CH54_RS04255	PF00005	ABC transporter
CH54_RS04255	PF00664	ABC transporter transmembrane region
CH54_RS04260	PF00005	ABC transporter
CH54_RS04260	PF00664	ABC transporter transmembrane region
CH54_RS04265	PF00005	ABC transporter
CH54_RS04270	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS04275	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS04280	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS04285	PF07715	TonB-dependent Receptor Plug Domain
CH54_RS04290	PF12833	Helix-turn-helix domain
CH54_RS04295	PF00425	chorismate binding enzyme
CH54_RS04300	PF00501	AMP-binding enzyme
CH54_RS04300	PF13193	AMP-binding enzyme C-terminal domain
CH54_RS04305	PF13649	Methyltransferase domain
CH54_RS04310	PF00975	Thioesterase domain
CH54_RS04315	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH54_RS04320	PF03435	Saccharopine dehydrogenase
CH54_RS04325	PF00501	AMP-binding enzyme
CH54_RS04325	PF00550	Phosphopantetheine attachment site
CH54_RS04325	PF00668	Condensation domain
CH54_RS04325	PF00975	Thioesterase domain
CH54_RS04325	PF08242	Methyltransferase domain
CH54_RS04325	PF08415	CH54_RS04325
CH54_RS04330	PF00501	AMP-binding enzyme
CH54_RS04330	PF00550	Phosphopantetheine attachment site
CH54_RS04330	PF00668	Condensation domain
CH54_RS04330	PF08415	CH54_RS04330
CH54_RS04330	PF13193	AMP-binding enzyme C-terminal domain
CH54_RS04340	PF01648	4'-phosphopantetheinyl transferase superfamily
CH54_RS04345	PF00107	Zinc-binding dehydrogenase
CH54_RS04345	PF08240	Alcohol dehydrogenase GroES-like domain
CH54_RS04350	PF01042	Endoribonuclease L-PSP
CH54_RS04355	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS04355	PF03466	LysR substrate binding domain
CH54_RS04360	PF00072	Response regulator receiver domain
CH54_RS04360	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS04365	PF00072	Response regulator receiver domain
CH54_RS04365	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS04365	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS04365	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS04370	PF00419	Fimbrial protein
CH54_RS04375	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH54_RS04375	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH54_RS04380	PF00577	Outer membrane usher protein
CH54_RS04380	PF13953	PapC C-terminal domain
CH54_RS04380	PF13954	PapC N-terminal domain
CH54_RS04385	PF00419	Fimbrial protein
CH54_RS04390	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH54_RS04390	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH54_RS04400	PF00072	Response regulator receiver domain
CH54_RS04400	PF01584	CheW-like domain
CH54_RS04405	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS04405	PF03466	LysR substrate binding domain
CH54_RS04410	PF00144	Beta-lactamase
CH54_RS04415	PF07690	Major Facilitator Superfamily
CH54_RS04420	PF00455	CH54_RS04420
CH54_RS04420	PF08220	DeoR-like helix-turn-helix domain
CH54_RS04425	PF08282	haloacid dehalogenase-like hydrolase
CH54_RS04430	PF00977	Histidine biosynthesis protein
CH54_RS04440	PF01554	MatE
CH54_RS04445	PF00764	Arginosuccinate synthase
CH54_RS04450	PF03825	CH54_RS04450
CH54_RS04455	PF01048	Phosphorylase superfamily
CH54_RS04460	PF00892	EamA-like transporter family
CH54_RS04465	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS04465	PF03466	LysR substrate binding domain
CH54_RS04470	PF02277	Phosphoribosyltransferase
CH54_RS04475	PF00300	Histidine phosphatase superfamily (branch 1)
CH54_RS04480	PF02654	CH54_RS04480
CH54_RS04485	PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
CH54_RS04490	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CH54_RS04490	PF07685	CobB/CobQ-like glutamine amidotransferase domain
CH54_RS04495	PF00005	ABC transporter
CH54_RS04500	PF02361	Cobalt transport protein
CH54_RS04505	PF02553	CH54_RS04505
CH54_RS04510	PF01891	Cobalt uptake substrate-specific transmembrane region
CH54_RS04515	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH54_RS04520	PF06180	Cobalt chelatase (CbiK)
CH54_RS04525	PF02571	CH54_RS04525
CH54_RS04530	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH54_RS04535	PF01890	Cobalamin synthesis G C-terminus
CH54_RS04535	PF11760	Cobalamin synthesis G N-terminal
CH54_RS04535	PF11761	CH54_RS04535
CH54_RS04540	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH54_RS04545	PF13847	Methyltransferase domain
CH54_RS04550	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH54_RS04555	PF01888	CbiD
CH54_RS04560	PF02570	Precorrin-8X methylmutase
CH54_RS04565	PF03186	CH54_RS04565
CH54_RS04570	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CH54_RS04570	PF07685	CobB/CobQ-like glutamine amidotransferase domain
CH54_RS04575	PF10114	CH54_RS04575
CH54_RS04575	PF12833	Helix-turn-helix domain
CH54_RS04580	PF00230	Major intrinsic protein
CH54_RS04585	PF00936	BMC domain
CH54_RS04590	PF00936	BMC domain
CH54_RS04595	PF02286	Dehydratase large subunit
CH54_RS04600	PF02288	Dehydratase medium subunit
CH54_RS04605	PF02287	Dehydratase small subunit
CH54_RS04610	PF08841	Diol dehydratase reactivase ATPase-like domain
CH54_RS04615	PF02288	Dehydratase medium subunit
CH54_RS04620	PF00936	BMC domain
CH54_RS04625	PF00936	BMC domain
CH54_RS04630	PF06130	CH54_RS04630
CH54_RS04635	PF15953	CH54_RS04635
CH54_RS04640	PF03319	Ethanolamine utilisation protein EutN/carboxysome
CH54_RS04645	PF01923	Cobalamin adenosyltransferase
CH54_RS04645	PF03928	Domain of unknown function (DUF336)
CH54_RS04650	PF00171	Aldehyde dehydrogenase family
CH54_RS04655	PF00465	Iron-containing alcohol dehydrogenase
CH54_RS04660	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CH54_RS04660	PF10531	SLBB domain
CH54_RS04660	PF13375	RnfC Barrel sandwich hybrid domain
CH54_RS04660	PF13534	4Fe-4S dicluster domain
CH54_RS04665	PF00936	BMC domain
CH54_RS04670	PF00936	BMC domain
CH54_RS04675	PF10662	Ethanolamine utilisation - propanediol utilisation
CH54_RS04680	PF00871	Acetokinase family
CH54_RS04685	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH54_RS04690	PF00155	Aminotransferase class I and II
CH54_RS04695	PF00288	GHMP kinases N terminal domain
CH54_RS04700	PF13407	Periplasmic binding protein domain
CH54_RS04705	PF00005	ABC transporter
CH54_RS04710	PF02653	CH54_RS04710
CH54_RS04715	PF02653	CH54_RS04715
CH54_RS04720	PF04363	CH54_RS04720
CH54_RS04725	PF13515	CH54_RS04725
CH54_RS04730	PF07993	Male sterility protein
CH54_RS04735	PF00929	Exonuclease
CH54_RS04735	PF08411	Exonuclease C-terminal
CH54_RS04740	PF13520	Amino acid permease
CH54_RS04750	PF00465	Iron-containing alcohol dehydrogenase
CH54_RS04755	PF00005	ABC transporter
CH54_RS04760	PF02653	CH54_RS04760
CH54_RS04765	PF01370	NAD dependent epimerase/dehydratase family
CH54_RS04770	PF01634	ATP phosphoribosyltransferase
CH54_RS04770	PF08029	HisG, C-terminal domain
CH54_RS04775	PF00815	Histidinol dehydrogenase
CH54_RS04780	PF00155	Aminotransferase class I and II
CH54_RS04785	PF00475	Imidazoleglycerol-phosphate dehydratase
CH54_RS04785	PF13242	HAD-hyrolase-like
CH54_RS04790	PF00117	Glutamine amidotransferase class-I
CH54_RS04795	PF00977	Histidine biosynthesis protein
CH54_RS04800	PF00977	Histidine biosynthesis protein
CH54_RS04805	PF01502	Phosphoribosyl-AMP cyclohydrolase
CH54_RS04805	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
CH54_RS04810	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
CH54_RS04810	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
CH54_RS04815	PF00483	Nucleotidyl transferase
CH54_RS04820	PF00483	Nucleotidyl transferase
CH54_RS04825	PF00571	CBS domain
CH54_RS04825	PF03471	Transporter associated domain
CH54_RS04825	PF03741	CH54_RS04825
CH54_RS04830	PF03606	CH54_RS04830
CH54_RS04835	PF05170	CH54_RS04835
CH54_RS04835	PF13502	CH54_RS04835
CH54_RS04840	PF00692	dUTPase
CH54_RS04845	PF00485	Phosphoribulokinase / Uridine kinase family
CH54_RS04850	PF10609	ParA/MinD ATPase like
CH54_RS04855	PF01588	Putative tRNA binding domain
CH54_RS04855	PF09334	tRNA synthetases class I (M)
CH54_RS04865	PF13407	Periplasmic binding protein domain
CH54_RS04870	PF08309	CH54_RS04870
CH54_RS04875	PF07690	Major Facilitator Superfamily
CH54_RS04880	PF03788	CH54_RS04880
CH54_RS04885	PF04172	CH54_RS04885
CH54_RS04890	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
CH54_RS04890	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
CH54_RS04895	PF00390	Malic enzyme, N-terminal domain
CH54_RS04895	PF03949	Malic enzyme, NAD binding domain
CH54_RS04900	PF02698	DUF218 domain
CH54_RS04905	PF01455	HupF/HypC family
CH54_RS04910	PF01155	Hydrogenase expression/synthesis hypA family
CH54_RS04915	PF00037	4Fe-4S binding domain
CH54_RS04915	PF12798	4Fe-4S binding domain
CH54_RS04920	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH54_RS04925	PF00146	NADH dehydrogenase
CH54_RS04930	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH54_RS04930	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
CH54_RS04935	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
CH54_RS04940	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH54_RS04940	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
CH54_RS04945	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
CH54_RS04945	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
CH54_RS04945	PF00374	Nickel-dependent hydrogenase
CH54_RS04950	PF12838	4Fe-4S dicluster domain
CH54_RS04955	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
CH54_RS04960	PF07450	CH54_RS04960
CH54_RS04965	PF01750	Hydrogenase maturation protease
CH54_RS04970	PF12800	4Fe-4S binding domain
CH54_RS04970	PF13247	4Fe-4S dicluster domain
CH54_RS04975	PF00384	Molybdopterin oxidoreductase
CH54_RS04975	PF01568	Molydopterin dinucleotide binding domain
CH54_RS04975	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH54_RS04980	PF00158	Sigma-54 interaction domain
CH54_RS04980	PF01590	GAF domain
CH54_RS04980	PF13185	GAF domain
CH54_RS04985	PF01226	Formate/nitrite transporter
CH54_RS04990	PF02653	CH54_RS04990
CH54_RS04995	PF00005	ABC transporter
CH54_RS05000	PF13407	Periplasmic binding protein domain
CH54_RS05005	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS05005	PF13377	Periplasmic binding protein-like domain
CH54_RS05010	PF04235	CH54_RS05010
CH54_RS05015	PF01227	GTP cyclohydrolase I
CH54_RS05020	PF06779	CH54_RS05020
CH54_RS05025	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS05025	PF03466	LysR substrate binding domain
CH54_RS05030	PF00107	Zinc-binding dehydrogenase
CH54_RS05030	PF08240	Alcohol dehydrogenase GroES-like domain
CH54_RS05035	PF00756	Putative esterase
CH54_RS05050	PF13437	HlyD family secretion protein
CH54_RS05055	PF00005	ABC transporter
CH54_RS05060	PF04055	Radical SAM superfamily
CH54_RS05065	PF07690	Major Facilitator Superfamily
CH54_RS05070	PF06041	Bacterial protein of unknown function (DUF924)
CH54_RS05075	PF00994	Probable molybdopterin binding domain
CH54_RS05075	PF03453	MoeA N-terminal region (domain I and II)
CH54_RS05075	PF03454	MoeA C-terminal region (domain IV)
CH54_RS05080	PF00899	ThiF family
CH54_RS05085	PF00005	ABC transporter
CH54_RS05085	PF12848	ABC transporter
CH54_RS05090	PF01545	Cation efflux family
CH54_RS05095	PF06316	Enterobacterial Ail/Lom protein
CH54_RS05100	PF00892	EamA-like transporter family
CH54_RS05105	PF00583	Acetyltransferase (GNAT) family
CH54_RS05110	PF02469	Fasciclin domain
CH54_RS05115	PF04542	Sigma-70 region 2
CH54_RS05115	PF08281	Sigma-70, region 4
CH54_RS05120	PF10099	CH54_RS05120
CH54_RS05125	PF13847	Methyltransferase domain
CH54_RS05130	PF00210	Ferritin-like domain
CH54_RS05135	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS05140	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS05145	PF00005	ABC transporter
CH54_RS05150	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH54_RS05150	PF08447	PAS fold
CH54_RS05150	PF08448	PAS fold
CH54_RS05155	PF05971	Protein of unknown function (DUF890)
CH54_RS05160	PF07338	Protein of unknown function (DUF1471)
CH54_RS05165	PF01432	Peptidase family M3
CH54_RS05170	PF02885	Glycosyl transferase family, helical bundle domain
CH54_RS05175	PF00230	Major intrinsic protein
CH54_RS05180	PF00270	DEAD/DEAH box helicase
CH54_RS05180	PF06733	DEAD_2
CH54_RS05180	PF13307	Helicase C-terminal domain
CH54_RS05185	PF00267	Gram-negative porin
CH54_RS05195	PF00892	EamA-like transporter family
CH54_RS05205	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
CH54_RS05210	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS05215	PF00005	ABC transporter
CH54_RS05220	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS05225	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
CH54_RS05230	PF00487	CH54_RS05230
CH54_RS05235	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH54_RS05235	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
CH54_RS05240	PF00581	Rhodanese-like domain
CH54_RS05245	PF07308	CH54_RS05245
CH54_RS05250	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS05255	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS05260	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
CH54_RS05265	PF00005	ABC transporter
CH54_RS05270	PF04226	CH54_RS05270
CH54_RS05275	PF05076	Suppressor of fused protein (SUFU)
CH54_RS05280	PF01844	HNH endonuclease
CH54_RS05285	PF01928	CYTH domain
CH54_RS05290	PF01565	FAD binding domain
CH54_RS05290	PF09330	D-lactate dehydrogenase, membrane binding
CH54_RS05295	PF00768	D-alanyl-D-alanine carboxypeptidase
CH54_RS05305	PF00571	CBS domain
CH54_RS05305	PF01769	Divalent cation transporter
CH54_RS05315	PF01207	Dihydrouridine synthase (Dus)
CH54_RS05320	PF00270	DEAD/DEAH box helicase
CH54_RS05320	PF00271	Helicase conserved C-terminal domain
CH54_RS05325	PF00440	Bacterial regulatory proteins, tetR family
CH54_RS05325	PF09209	Domain of unknown function (DUF1956)
CH54_RS05330	PF16576	CH54_RS05330
CH54_RS05335	PF00005	ABC transporter
CH54_RS05340	PF12698	ABC-2 family transporter protein
CH54_RS05345	PF12698	ABC-2 family transporter protein
CH54_RS05350	PF01027	Inhibitor of apoptosis-promoting Bax1
CH54_RS05355	PF02391	MoaE protein
CH54_RS05360	PF02597	ThiS family
CH54_RS05365	PF01967	MoaC family
CH54_RS05370	PF04055	Radical SAM superfamily
CH54_RS05370	PF06463	Molybdenum Cofactor Synthesis C
CH54_RS05370	PF13353	4Fe-4S single cluster domain
CH54_RS05375	PF01933	Uncharacterised protein family UPF0052
CH54_RS05380	PF09905	Uncharacterized conserved protein (DUF2132)
CH54_RS05385	PF00271	Helicase conserved C-terminal domain
CH54_RS05385	PF02151	UvrB/uvrC motif
CH54_RS05385	PF04851	Type III restriction enzyme, res subunit
CH54_RS05385	PF12344	Ultra-violet resistance protein B
CH54_RS05390	PF00005	ABC transporter
CH54_RS05395	PF13500	AAA domain
CH54_RS05400	PF08241	Methyltransferase domain
CH54_RS05405	PF00155	Aminotransferase class I and II
CH54_RS05410	PF04055	Radical SAM superfamily
CH54_RS05410	PF06968	Biotin and Thiamin Synthesis associated domain
CH54_RS05415	PF00202	Aminotransferase class-III
CH54_RS05420	PF10282	Lactonase, 7-bladed beta-propeller
CH54_RS05425	PF08282	haloacid dehalogenase-like hydrolase
CH54_RS05430	PF00005	ABC transporter
CH54_RS05430	PF03459	TOBE domain
CH54_RS05435	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS05440	PF13531	Bacterial extracellular solute-binding protein
CH54_RS05445	PF10766	Protein of unknown function (DUF2592)
CH54_RS05450	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS05450	PF03459	TOBE domain
CH54_RS05455	PF00005	ABC transporter
CH54_RS05460	PF02517	CAAX protease self-immunity
CH54_RS05465	PF16363	CH54_RS05465
CH54_RS05470	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
CH54_RS05470	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
CH54_RS05475	PF00288	GHMP kinases N terminal domain
CH54_RS05475	PF08544	GHMP kinases C terminal
CH54_RS05475	PF10509	Galactokinase galactose-binding signature
CH54_RS05480	PF01263	Aldose 1-epimerase
CH54_RS05485	PF07769	CH54_RS05485
CH54_RS05490	PF00300	Histidine phosphatase superfamily (branch 1)
CH54_RS05495	PF00793	DAHP synthetase I family
CH54_RS05500	PF01545	Cation efflux family
CH54_RS05505	PF04973	CH54_RS05505
CH54_RS05510	PF02445	Quinolinate synthetase A protein
CH54_RS05535	PF13174	Tetratricopeptide repeat
CH54_RS05535	PF13432	Tetratricopeptide repeat
CH54_RS05535	PF16331	CH54_RS05535
CH54_RS05540	PF00691	OmpA family
CH54_RS05545	PF04052	TolB amino-terminal domain
CH54_RS05545	PF07676	WD40-like Beta Propeller Repeat
CH54_RS05550	PF06519	TolA C-terminal
CH54_RS05555	PF02472	Biopolymer transport protein ExbD/TolR
CH54_RS05560	PF01618	CH54_RS05560
CH54_RS05565	PF03061	Thioesterase superfamily
CH54_RS05570	PF09600	CH54_RS05570
CH54_RS05575	PF08173	CH54_RS05575
CH54_RS05580	PF02322	CH54_RS05580
CH54_RS05585	PF01654	CH54_RS05585
CH54_RS05590	PF00149	Calcineurin-like phosphoesterase
CH54_RS05590	PF02872	5'-nucleotidase, C-terminal domain
CH54_RS05595	PF00549	CoA-ligase
CH54_RS05595	PF02629	CoA binding domain
CH54_RS05600	PF00549	CoA-ligase
CH54_RS05600	PF08442	ATP-grasp domain
CH54_RS05605	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CH54_RS05605	PF00364	Biotin-requiring enzyme
CH54_RS05605	PF02817	e3 binding domain
CH54_RS05610	PF00676	Dehydrogenase E1 component
CH54_RS05610	PF02779	Transketolase, pyrimidine binding domain
CH54_RS05610	PF16078	CH54_RS05610
CH54_RS05610	PF16870	CH54_RS05610
CH54_RS05615	PF13085	2Fe-2S iron-sulfur cluster binding domain
CH54_RS05615	PF13534	4Fe-4S dicluster domain
CH54_RS05620	PF00890	FAD binding domain
CH54_RS05620	PF02910	Fumarate reductase flavoprotein C-term
CH54_RS05630	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
CH54_RS05635	PF00285	Citrate synthase
CH54_RS05640	PF01470	Pyroglutamyl peptidase
CH54_RS05645	PF06166	CH54_RS05645
CH54_RS05650	PF06149	CH54_RS05650
CH54_RS05655	PF03746	LamB/YcsF family
CH54_RS05660	PF02626	Allophanate hydrolase subunit 2
CH54_RS05665	PF02682	Allophanate hydrolase subunit 1
CH54_RS05670	PF01784	NIF3 (NGG1p interacting factor 3)
CH54_RS05675	PF02112	CH54_RS05675
CH54_RS05680	PF00875	DNA photolyase
CH54_RS05680	PF03441	FAD binding domain of DNA photolyase
CH54_RS05685	PF08349	CH54_RS05685
CH54_RS05690	PF10725	CH54_RS05690
CH54_RS05695	PF09604	CH54_RS05695
CH54_RS05700	PF03814	CH54_RS05700
CH54_RS05705	PF00122	E1-E2 ATPase
CH54_RS05705	PF00702	haloacid dehalogenase-like hydrolase
CH54_RS05710	PF02669	CH54_RS05710
CH54_RS05715	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS05715	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS05715	PF02702	Osmosensitive K+ channel His kinase sensor domain
CH54_RS05715	PF13492	GAF domain
CH54_RS05715	PF13493	Domain of unknown function (DUF4118)
CH54_RS05720	PF00072	Response regulator receiver domain
CH54_RS05720	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS05725	PF00892	EamA-like transporter family
CH54_RS05730	PF00353	Hemolysin-type calcium-binding repeat (2 copies)
CH54_RS05735	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CH54_RS05735	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CH54_RS05735	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CH54_RS05735	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CH54_RS05740	PF03925	SeqA protein
CH54_RS05745	PF12697	Alpha/beta hydrolase family
CH54_RS05750	PF01402	Ribbon-helix-helix protein, copG family
CH54_RS05755	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH54_RS05755	PF02203	Tar ligand binding domain homologue
CH54_RS05760	PF00258	Flavodoxin
CH54_RS05765	PF01475	Ferric uptake regulator family
CH54_RS05770	PF00728	Glycosyl hydrolase family 20, catalytic domain
CH54_RS05770	PF02838	Glycosyl hydrolase family 20, domain 2
CH54_RS05770	PF03173	Putative carbohydrate binding domain
CH54_RS05770	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
CH54_RS05775	PF13982	CH54_RS05775
CH54_RS05780	PF03573	outer membrane porin, OprD family
CH54_RS05785	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CH54_RS05785	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
CH54_RS05790	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
CH54_RS05790	PF00367	phosphotransferase system, EIIB
CH54_RS05790	PF02378	Phosphotransferase system, EIIC
CH54_RS05795	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
CH54_RS05800	PF01979	Amidohydrolase family
CH54_RS05805	PF00480	ROK family
CH54_RS05805	PF01047	MarR family
CH54_RS05810	PF13242	HAD-hyrolase-like
CH54_RS05810	PF13344	Haloacid dehalogenase-like hydrolase
CH54_RS05815	PF00733	Asparagine synthase
CH54_RS05815	PF13537	Glutamine amidotransferase domain
CH54_RS05850	PF01494	FAD binding domain
CH54_RS05855	PF00919	Uncharacterized protein family UPF0004
CH54_RS05855	PF01938	TRAM domain
CH54_RS05855	PF04055	Radical SAM superfamily
CH54_RS05860	PF02562	PhoH-like protein
CH54_RS05865	PF02130	Uncharacterized protein family UPF0054
CH54_RS05870	PF00571	CBS domain
CH54_RS05870	PF03471	Transporter associated domain
CH54_RS05875	PF00795	Carbon-nitrogen hydrolase
CH54_RS05880	PF01243	Pyridoxamine 5'-phosphate oxidase
CH54_RS05885	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS05890	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS05895	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS05900	PF00005	ABC transporter
CH54_RS05905	PF01156	Inosine-uridine preferring nucleoside hydrolase
CH54_RS05910	PF07295	CH54_RS05910
CH54_RS05915	PF00133	tRNA synthetases class I (I, L, M and V)
CH54_RS05915	PF08264	Anticodon-binding domain of tRNA
CH54_RS05915	PF13603	Leucyl-tRNA synthetase, Domain 2
CH54_RS05920	PF04390	Lipopolysaccharide-assembly
CH54_RS05925	PF06144	DNA polymerase III, delta subunit
CH54_RS05925	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
CH54_RS05930	PF01467	Cytidylyltransferase
CH54_RS05935	PF02410	Oligomerisation domain
CH54_RS05940	PF02590	Predicted SPOUT methyltransferase
CH54_RS05945	PF00905	Penicillin binding protein transpeptidase domain
CH54_RS05945	PF03717	Penicillin-binding Protein dimerisation domain
CH54_RS05950	PF01098	CH54_RS05950
CH54_RS05955	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
CH54_RS05955	PF05036	Sporulation related domain
CH54_RS05960	PF00768	D-alanyl-D-alanine carboxypeptidase
CH54_RS05960	PF07943	Penicillin-binding protein 5, C-terminal domain
CH54_RS05965	PF04359	Protein of unknown function (DUF493)
CH54_RS05970	PF03099	Biotin/lipoate A/B protein ligase family
CH54_RS05975	PF04055	Radical SAM superfamily
CH54_RS05975	PF16881	CH54_RS05975
CH54_RS05980	PF02416	mttA/Hcf106 family
CH54_RS05985	PF00990	GGDEF domain
CH54_RS05985	PF05230	CH54_RS05985
CH54_RS05990	PF02537	CH54_RS05990
CH54_RS05995	PF00313	'Cold-shock' DNA-binding domain
CH54_RS06000	PF00313	'Cold-shock' DNA-binding domain
CH54_RS06005	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS06020	PF08971	Glycogen synthesis protein
CH54_RS06025	PF03992	Antibiotic biosynthesis monooxygenase
CH54_RS06030	PF00005	ABC transporter
CH54_RS06030	PF00664	ABC transporter transmembrane region
CH54_RS06035	PF08007	Cupin superfamily protein
CH54_RS06040	PF03831	PhnA protein
CH54_RS06040	PF08274	PhnA Zinc-Ribbon
CH54_RS06050	PF03551	Transcriptional regulator PadR-like family
CH54_RS06055	PF12977	Domain of Unknown Function with PDB structure (DUF3861)
CH54_RS06060	PF00232	Glycosyl hydrolase family 1
CH54_RS06065	PF00367	phosphotransferase system, EIIB
CH54_RS06065	PF02378	Phosphotransferase system, EIIC
CH54_RS06070	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS06070	PF13377	Periplasmic binding protein-like domain
CH54_RS06075	PF04264	YceI-like domain
CH54_RS06080	PF01292	Prokaryotic cytochrome b561
CH54_RS06085	PF03886	Protein of unknown function (DUF330)
CH54_RS06090	PF02470	CH54_RS06090
CH54_RS06095	PF00005	ABC transporter
CH54_RS06100	PF02405	CH54_RS06100
CH54_RS06105	PF07690	Major Facilitator Superfamily
CH54_RS06110	PF00440	Bacterial regulatory proteins, tetR family
CH54_RS06110	PF13977	Bacterial transcriptional repressor
CH54_RS06115	PF07969	Amidohydrolase family
CH54_RS06120	PF00324	Amino acid permease
CH54_RS06125	PF13406	Transglycosylase SLT domain
CH54_RS06130	PF13343	Bacterial extracellular solute-binding protein
CH54_RS06135	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS06140	PF00005	ABC transporter
CH54_RS06145	PF01810	CH54_RS06145
CH54_RS06150	PF09900	CH54_RS06150
CH54_RS06155	PF00384	Molybdopterin oxidoreductase
CH54_RS06155	PF01568	Molydopterin dinucleotide binding domain
CH54_RS06155	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH54_RS06160	PF12800	4Fe-4S binding domain
CH54_RS06160	PF13247	4Fe-4S dicluster domain
CH54_RS06165	PF04976	CH54_RS06165
CH54_RS06170	PF02613	Nitrate reductase delta subunit
CH54_RS06175	PF00037	4Fe-4S binding domain
CH54_RS06180	PF05643	Putative bacterial lipoprotein (DUF799)
CH54_RS06185	PF16068	CH54_RS06185
CH54_RS06190	PF03783	Curli production assembly/transport component CsgG
CH54_RS06195	PF15970	CH54_RS06195
CH54_RS06205	PF01292	Prokaryotic cytochrome b561
CH54_RS06210	PF00155	Aminotransferase class I and II
CH54_RS06215	PF13302	Acetyltransferase (GNAT) domain
CH54_RS06220	PF07350	Protein of unknown function (DUF1479)
CH54_RS06225	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS06225	PF06580	CH54_RS06225
CH54_RS06225	PF07694	5TMR of 5TMR-LYT
CH54_RS06230	PF00072	Response regulator receiver domain
CH54_RS06230	PF04397	LytTr DNA-binding domain
CH54_RS06235	PF07690	Major Facilitator Superfamily
CH54_RS06240	PF02685	Glucokinase
CH54_RS06245	PF05232	CH54_RS06245
CH54_RS06250	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS06250	PF03466	LysR substrate binding domain
CH54_RS06255	PF00248	Aldo/keto reductase family
CH54_RS06265	PF10697	CH54_RS06265
CH54_RS06270	PF01566	CH54_RS06270
CH54_RS06275	PF01773	Na+ dependent nucleoside transporter N-terminus
CH54_RS06275	PF07662	Na+ dependent nucleoside transporter C-terminus
CH54_RS06275	PF07670	Nucleoside recognition
CH54_RS06300	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CH54_RS06320	PF06042	Bacterial protein of unknown function (DUF925)
CH54_RS06325	PF14282	CH54_RS06325
CH54_RS06330	PF12843	CH54_RS06330
CH54_RS06335	PF00533	BRCA1 C Terminus (BRCT) domain
CH54_RS06335	PF01653	NAD-dependent DNA ligase adenylation domain
CH54_RS06335	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
CH54_RS06335	PF03120	NAD-dependent DNA ligase OB-fold domain
CH54_RS06335	PF12826	Helix-hairpin-helix motif
CH54_RS06335	PF14520	Helix-hairpin-helix domain
CH54_RS06340	PF04354	ZipA, C-terminal FtsZ-binding domain
CH54_RS06345	PF07264	Etoposide-induced protein 2
CH54_RS06350	PF00291	Pyridoxal-phosphate dependent enzyme
CH54_RS06355	PF00381	PTS HPr component phosphorylation site
CH54_RS06360	PF00391	PEP-utilising enzyme, mobile domain
CH54_RS06360	PF02896	PEP-utilising enzyme, TIM barrel domain
CH54_RS06360	PF05524	PEP-utilising enzyme, N-terminal
CH54_RS06365	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
CH54_RS06370	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS06370	PF00672	HAMP domain
CH54_RS06370	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS06375	PF00072	Response regulator receiver domain
CH54_RS06375	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS06380	PF00291	Pyridoxal-phosphate dependent enzyme
CH54_RS06385	PF00005	ABC transporter
CH54_RS06390	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS06395	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS06400	PF13531	Bacterial extracellular solute-binding protein
CH54_RS06405	PF07690	Major Facilitator Superfamily
CH54_RS06410	PF01380	SIS domain
CH54_RS06410	PF01418	Helix-turn-helix domain, rpiR family
CH54_RS06415	PF04074	Domain of unknown function (DUF386)
CH54_RS06420	PF00480	ROK family
CH54_RS06425	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
CH54_RS06430	PF00701	Dihydrodipicolinate synthetase family
CH54_RS06435	PF04261	Dyp-type peroxidase family
CH54_RS06440	PF06572	Protein of unknown function (DUF1131)
CH54_RS06445	PF04076	Bacterial OB fold (BOF) protein
CH54_RS06450	PF00583	Acetyltransferase (GNAT) family
CH54_RS06455	PF01218	Coproporphyrinogen III oxidase
CH54_RS06460	PF02639	CH54_RS06460
CH54_RS06465	PF00390	Malic enzyme, N-terminal domain
CH54_RS06465	PF01515	Phosphate acetyl/butaryl transferase
CH54_RS06465	PF03949	Malic enzyme, NAD binding domain
CH54_RS06470	PF00293	NUDIX domain
CH54_RS06475	PF05016	Plasmid stabilisation system protein
CH54_RS06480	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
CH54_RS06485	PF03264	NapC/NirT cytochrome c family, N-terminal region
CH54_RS06490	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
CH54_RS06495	PF00384	Molybdopterin oxidoreductase
CH54_RS06495	PF01568	Molydopterin dinucleotide binding domain
CH54_RS06495	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH54_RS06495	PF10518	TAT (twin-arginine translocation) pathway signal sequence
CH54_RS06500	PF03927	NapD protein
CH54_RS06505	PF12800	4Fe-4S binding domain
CH54_RS06505	PF12838	4Fe-4S dicluster domain
CH54_RS06510	PF00072	Response regulator receiver domain
CH54_RS06510	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS06515	PF09904	Winged helix-turn helix
CH54_RS06520	PF00873	AcrB/AcrD/AcrF family
CH54_RS06525	PF00005	ABC transporter
CH54_RS06530	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS06535	PF13416	Bacterial extracellular solute-binding protein
CH54_RS06540	PF12688	Tetratrico peptide repeat
CH54_RS06545	PF06836	CH54_RS06545
CH54_RS06550	PF05488	PAAR motif
CH54_RS06555	PF03960	ArsC family
CH54_RS06560	PF01546	Peptidase family M20/M25/M40
CH54_RS06560	PF07687	Peptidase dimerisation domain
CH54_RS06565	PF02557	D-alanyl-D-alanine carboxypeptidase
CH54_RS06570	PF13980	CH54_RS06570
CH54_RS06575	PF02230	Phospholipase/Carboxylesterase
CH54_RS06580	PF05127	Helicase
CH54_RS06580	PF08351	Domain of unknown function (DUF1726)
CH54_RS06580	PF13718	GNAT acetyltransferase 2
CH54_RS06580	PF17176	CH54_RS06580
CH54_RS06585	PF04284	CH54_RS06585
CH54_RS06590	PF04228	CH54_RS06590
CH54_RS06595	PF01259	SAICAR synthetase
CH54_RS06600	PF06804	NlpB/DapX lipoprotein
CH54_RS06605	PF00701	Dihydrodipicolinate synthetase family
CH54_RS06610	PF13740	ACT domain
CH54_RS06615	PF00578	AhpC/TSA family
CH54_RS06620	PF01594	CH54_RS06620
CH54_RS06625	PF01435	Peptidase family M48
CH54_RS06625	PF14559	Tetratricopeptide repeat
CH54_RS06630	PF03960	ArsC family
CH54_RS06635	PF00308	Bacterial dnaA  protein
CH54_RS06640	PF00860	Permease family
CH54_RS06645	PF14681	Uracil phosphoribosyltransferase
CH54_RS06650	PF00586	AIR synthase related protein, N-terminal domain
CH54_RS06650	PF02769	AIR synthase related protein, C-terminal domain
CH54_RS06655	PF00551	Formyl transferase
CH54_RS06660	PF13302	Acetyltransferase (GNAT) domain
CH54_RS06670	PF00005	ABC transporter
CH54_RS06675	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS06680	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS06685	PF02503	Polyphosphate kinase middle domain
CH54_RS06685	PF13089	Polyphosphate kinase N-terminal domain
CH54_RS06685	PF13090	Polyphosphate kinase C-terminal domain
CH54_RS06690	PF02541	Ppx/GppA phosphatase family
CH54_RS06695	PF11119	CH54_RS06695
CH54_RS06700	PF00571	CBS domain
CH54_RS06700	PF01769	Divalent cation transporter
CH54_RS06700	PF03448	MgtE intracellular N domain
CH54_RS06705	PF00563	EAL domain
CH54_RS06705	PF00990	GGDEF domain
CH54_RS06705	PF05231	CH54_RS06705
CH54_RS06705	PF08447	PAS fold
CH54_RS06705	PF08448	PAS fold
CH54_RS06710	PF00012	Hsp70 protein
CH54_RS06720	PF13437	HlyD family secretion protein
CH54_RS06720	PF13533	Biotin-lipoyl like
CH54_RS06725	PF00873	AcrB/AcrD/AcrF family
CH54_RS06730	PF00873	AcrB/AcrD/AcrF family
CH54_RS06735	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS06735	PF00672	HAMP domain
CH54_RS06735	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS06740	PF00072	Response regulator receiver domain
CH54_RS06740	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS06745	PF07411	Domain of unknown function (DUF1508)
CH54_RS06750	PF01136	CH54_RS06750
CH54_RS06750	PF16325	CH54_RS06750
CH54_RS06755	PF00781	Diacylglycerol kinase catalytic domain
CH54_RS06760	PF03608	CH54_RS06760
CH54_RS06765	PF03612	CH54_RS06765
CH54_RS06765	PF07663	CH54_RS06765
CH54_RS06770	PF03829	PTS system glucitol/sorbitol-specific IIA component
CH54_RS06775	PF00106	short chain dehydrogenase
CH54_RS06780	PF06923	CH54_RS06780
CH54_RS06785	PF00455	CH54_RS06785
CH54_RS06785	PF08220	DeoR-like helix-turn-helix domain
CH54_RS06790	PF00571	CBS domain
CH54_RS06790	PF01380	SIS domain
CH54_RS06795	PF08816	Inhibitor of vertebrate lysozyme (Ivy)
CH54_RS06805	PF08543	Phosphomethylpyrimidine kinase
CH54_RS06815	PF00034	Cytochrome c
CH54_RS06815	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
CH54_RS06820	PF00890	FAD binding domain
CH54_RS06820	PF05199	GMC oxidoreductase
CH54_RS06825	PF12318	CH54_RS06825
CH54_RS06840	PF13539	D-alanyl-D-alanine carboxypeptidase
CH54_RS06845	PF05449	CH54_RS06845
CH54_RS06850	PF16931	CH54_RS06850
CH54_RS06855	PF01757	CH54_RS06855
CH54_RS06945	PF12236	Bacteriophage head to tail connecting protein
CH54_RS06965	PF05127	Helicase
CH54_RS06970	PF03592	Terminase small subunit
CH54_RS06990	PF01258	Prokaryotic dksA/traR C4-type zinc finger
CH54_RS07005	PF06992	CH54_RS07005
CH54_RS07035	PF01381	Helix-turn-helix
CH54_RS07045	PF12684	PDDEXK-like domain of unknown function (DUF3799)
CH54_RS07050	PF03837	CH54_RS07050
CH54_RS07055	PF05930	Prophage CP4-57 regulatory protein (AlpA)
CH54_RS07075	PF05063	CH54_RS07075
CH54_RS07090	PF00589	Phage integrase family
CH54_RS07090	PF13356	Domain of unknown function (DUF4102)
CH54_RS07090	PF14659	Phage integrase, N-terminal SAM-like domain
CH54_RS07095	PF00117	Glutamine amidotransferase class-I
CH54_RS07095	PF00958	GMP synthase C terminal domain
CH54_RS07095	PF02540	NAD synthase
CH54_RS07100	PF00478	IMP dehydrogenase / GMP reductase domain
CH54_RS07100	PF00571	CBS domain
CH54_RS07105	PF02601	CH54_RS07105
CH54_RS07105	PF13742	CH54_RS07105
CH54_RS07110	PF07191	zinc-ribbons
CH54_RS07115	PF03547	CH54_RS07115
CH54_RS07120	PF01926	50S ribosome-binding GTPase
CH54_RS07120	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
CH54_RS07125	PF13360	PQQ-like domain
CH54_RS07130	PF09976	Tetratricopeptide repeat
CH54_RS07135	PF03129	Anticodon binding domain
CH54_RS07135	PF13393	Histidyl-tRNA synthetase
CH54_RS07145	PF04551	GcpE protein
CH54_RS07150	PF13413	Helix-turn-helix domain
CH54_RS07150	PF13464	CH54_RS07150
CH54_RS07155	PF13181	Tetratricopeptide repeat
CH54_RS07160	PF04055	Radical SAM superfamily
CH54_RS07165	PF00334	Nucleoside diphosphate kinase
CH54_RS07170	PF08964	Beta/Gamma crystallin
CH54_RS07170	PF09101	Exotoxin A binding
CH54_RS07175	PF00905	Penicillin binding protein transpeptidase domain
CH54_RS07175	PF00912	Transglycosylase
CH54_RS07175	PF06832	CH54_RS07175
CH54_RS07180	PF00207	Alpha-2-macroglobulin family
CH54_RS07180	PF01835	MG2 domain
CH54_RS07180	PF07703	Alpha-2-macroglobulin family N-terminal region
CH54_RS07180	PF10569	Alpha-macro-globulin thiol-ester bond-forming region
CH54_RS07180	PF11974	Alpha-2-macroglobulin MG1 domain
CH54_RS07190	PF07179	CH54_RS07190
CH54_RS07190	PF14581	CH54_RS07190
CH54_RS07195	PF00883	Cytosol aminopeptidase family, catalytic domain
CH54_RS07195	PF12404	CH54_RS07195
CH54_RS07200	PF04384	Iron-sulphur cluster assembly
CH54_RS07205	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH54_RS07210	PF00012	Hsp70 protein
CH54_RS07215	PF00226	DnaJ domain
CH54_RS07215	PF07743	HSCB C-terminal oligomerisation domain
CH54_RS07220	PF01521	Iron-sulphur cluster biosynthesis
CH54_RS07225	PF01592	NifU-like N terminal domain
CH54_RS07230	PF00266	Aminotransferase class-V
CH54_RS07235	PF02082	Transcriptional regulator
CH54_RS07240	PF00588	SpoU rRNA Methylase family
CH54_RS07245	PF00459	Inositol monophosphatase family
CH54_RS07250	PF03824	CH54_RS07250
CH54_RS07255	PF06226	CH54_RS07255
CH54_RS07260	PF00874	PRD domain
CH54_RS07265	PF12832	MFS_1 like family
CH54_RS07270	PF00464	Serine hydroxymethyltransferase
CH54_RS07275	PF00042	Globin
CH54_RS07275	PF00175	Oxidoreductase NAD-binding domain
CH54_RS07275	PF00970	Oxidoreductase FAD-binding domain
CH54_RS07280	PF14502	Helix-turn-helix domain
CH54_RS07280	PF14503	YhfZ C-terminal domain
CH54_RS07285	PF00874	PRD domain
CH54_RS07290	PF00543	Nitrogen regulatory protein P-II
CH54_RS07295	PF00795	Carbon-nitrogen hydrolase
CH54_RS07295	PF02540	NAD synthase
CH54_RS07300	PF00072	Response regulator receiver domain
CH54_RS07300	PF00158	Sigma-54 interaction domain
CH54_RS07305	PF13942	CH54_RS07305
CH54_RS07310	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS07310	PF00672	HAMP domain
CH54_RS07310	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS07315	PF02769	AIR synthase related protein, C-terminal domain
CH54_RS07315	PF13507	CobB/CobQ-like glutamine amidotransferase domain
CH54_RS07320	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS07320	PF01464	Transglycosylase SLT domain
CH54_RS07325	PF14437	CH54_RS07325
CH54_RS07335	PF12710	haloacid dehalogenase-like hydrolase
CH54_RS07340	PF01380	SIS domain
CH54_RS07345	PF13693	Winged helix-turn-helix DNA-binding
CH54_RS07350	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS07350	PF03472	Autoinducer binding domain
CH54_RS07355	PF01380	SIS domain
CH54_RS07355	PF01418	Helix-turn-helix domain, rpiR family
CH54_RS07360	PF12838	4Fe-4S dicluster domain
CH54_RS07365	PF02447	CH54_RS07365
CH54_RS07370	PF01648	4'-phosphopantetheinyl transferase superfamily
CH54_RS07375	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
CH54_RS07380	PF02565	Recombination protein O C terminal
CH54_RS07380	PF11967	Recombination protein O N terminal
CH54_RS07385	PF01926	50S ribosome-binding GTPase
CH54_RS07385	PF07650	KH domain
CH54_RS07390	PF00035	Double-stranded RNA binding motif
CH54_RS07390	PF14622	Ribonuclease-III-like
CH54_RS07395	PF00717	Peptidase S24-like
CH54_RS07395	PF10502	Signal peptidase, peptidase S26
CH54_RS07400	PF00009	Elongation factor Tu GTP binding domain
CH54_RS07400	PF00679	Elongation factor G C-terminus
CH54_RS07400	PF03144	Elongation factor Tu domain 2
CH54_RS07400	PF06421	GTP-binding protein LepA C-terminus
CH54_RS07410	PF04246	CH54_RS07410
CH54_RS07415	PF03888	MucB/RseB family
CH54_RS07415	PF17188	CH54_RS07415
CH54_RS07420	PF03872	Anti sigma-E protein RseA, N-terminal domain
CH54_RS07420	PF03873	Anti sigma-E protein RseA, C-terminal domain
CH54_RS07425	PF04542	Sigma-70 region 2
CH54_RS07425	PF08281	Sigma-70, region 4
CH54_RS07430	PF00890	FAD binding domain
CH54_RS07430	PF02910	Fumarate reductase flavoprotein C-term
CH54_RS07435	PF05175	Methyltransferase small domain
CH54_RS07440	PF00270	DEAD/DEAH box helicase
CH54_RS07440	PF00271	Helicase conserved C-terminal domain
CH54_RS07445	PF01228	Glycine radical
CH54_RS07450	PF03167	Uracil DNA glycosylase superfamily
CH54_RS07455	PF01025	GrpE
CH54_RS07460	PF01513	ATP-NAD kinase
CH54_RS07465	PF02463	RecF/RecN/SMC N terminal domain
CH54_RS07470	PF04355	SmpA / OmlA family
CH54_RS07475	PF03658	RnfH family Ubiquitin
CH54_RS07480	PF03364	Polyketide cyclase / dehydrase and lipid transport
CH54_RS07485	PF01668	SmpB protein
CH54_RS07490	PF00589	Phage integrase family
CH54_RS07490	PF13356	Domain of unknown function (DUF4102)
CH54_RS07495	PF13508	Acetyltransferase (GNAT) domain
CH54_RS07500	PF08808	CH54_RS07500
CH54_RS07505	PF04851	Type III restriction enzyme, res subunit
CH54_RS07510	PF01555	DNA methylase
CH54_RS07515	PF00580	UvrD/REP helicase N-terminal domain
CH54_RS07515	PF13245	Part of AAA domain
CH54_RS07520	PF13175	AAA ATPase domain
CH54_RS07530	PF05930	Prophage CP4-57 regulatory protein (AlpA)
CH54_RS07535	PF13148	CH54_RS07535
CH54_RS07540	PF11726	CH54_RS07540
CH54_RS07560	PF06067	CH54_RS07560
CH54_RS07565	PF04002	RadC-like JAB domain
CH54_RS07570	PF06755	CH54_RS07570
CH54_RS07575	PF04794	YdjC-like protein
CH54_RS07580	PF07883	Cupin domain
CH54_RS07580	PF12833	Helix-turn-helix domain
CH54_RS07585	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
CH54_RS07590	PF00232	Glycosyl hydrolase family 1
CH54_RS07595	PF02378	Phosphotransferase system, EIIC
CH54_RS07600	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH54_RS07605	PF07995	Glucose / Sorbosone dehydrogenase
CH54_RS07610	PF00248	Aldo/keto reductase family
CH54_RS07615	PF02537	CH54_RS07615
CH54_RS07620	PF02537	CH54_RS07620
CH54_RS07625	PF02254	TrkA-N domain
CH54_RS07625	PF07885	Ion channel
CH54_RS07630	PF06411	HdeA/HdeB family
CH54_RS07635	PF03824	CH54_RS07635
CH54_RS07640	PF03253	Urea transporter
CH54_RS07645	PF01774	UreD urease accessory protein
CH54_RS07650	PF02492	CobW/HypB/UreG, nucleotide-binding domain
CH54_RS07655	PF01730	UreF
CH54_RS07660	PF02814	UreE urease accessory protein, N-terminal domain
CH54_RS07660	PF05194	UreE urease accessory protein, C-terminal domain
CH54_RS07665	PF00449	Urease alpha-subunit, N-terminal domain
CH54_RS07665	PF01979	Amidohydrolase family
CH54_RS07670	PF00699	Urease beta subunit
CH54_RS07675	PF00547	Urease, gamma subunit
CH54_RS07685	PF00005	ABC transporter
CH54_RS07690	PF00005	ABC transporter
CH54_RS07695	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS07700	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS07705	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS07715	PF00581	Rhodanese-like domain
CH54_RS07720	PF01965	DJ-1/PfpI family
CH54_RS07720	PF12833	Helix-turn-helix domain
CH54_RS07725	PF00313	'Cold-shock' DNA-binding domain
CH54_RS07730	PF04899	CH54_RS07730
CH54_RS07735	PF06711	CH54_RS07735
CH54_RS07740	PF09400	Protein of unknown function (DUF2002)
CH54_RS07760	PF05957	CH54_RS07760
CH54_RS07765	PF00155	Aminotransferase class I and II
CH54_RS07765	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS07770	PF02627	Carboxymuconolactone decarboxylase family
CH54_RS07775	PF00462	Glutaredoxin
CH54_RS07780	PF07972	NrdI Flavodoxin like
CH54_RS07785	PF00317	Ribonucleotide reductase, all-alpha domain
CH54_RS07785	PF02867	Ribonucleotide reductase, barrel domain
CH54_RS07785	PF08343	Ribonucleotide reductase N-terminal
CH54_RS07790	PF00268	Ribonucleotide reductase, small chain
CH54_RS07795	PF00005	ABC transporter
CH54_RS07795	PF00571	CBS domain
CH54_RS07800	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS07805	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
CH54_RS07815	PF00929	Exonuclease
CH54_RS07820	PF00075	RNase H
CH54_RS07825	PF08241	Methyltransferase domain
CH54_RS07830	PF00753	Metallo-beta-lactamase superfamily
CH54_RS07830	PF16123	CH54_RS07830
CH54_RS07835	PF01464	Transglycosylase SLT domain
CH54_RS07835	PF01476	LysM domain
CH54_RS07840	PF03372	Endonuclease/Exonuclease/phosphatase family
CH54_RS07845	PF01609	Transposase DDE domain
CH54_RS07850	PF07690	Major Facilitator Superfamily
CH54_RS07855	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS07855	PF03466	LysR substrate binding domain
CH54_RS07860	PF00248	Aldo/keto reductase family
CH54_RS07890	PF00004	ATPase family associated with various cellular activities (AAA)
CH54_RS07890	PF02861	Clp amino terminal domain
CH54_RS07890	PF07724	AAA domain (Cdc48 subfamily)
CH54_RS07890	PF10431	C-terminal, D2-small domain, of ClpB protein
CH54_RS07895	PF02578	Multi-copper polyphenol oxidoreductase laccase
CH54_RS07900	PF00849	RNA pseudouridylate synthase
CH54_RS07900	PF01479	S4 domain
CH54_RS07905	PF13525	Outer membrane lipoprotein
CH54_RS07910	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
CH54_RS07915	PF00800	Prephenate dehydratase
CH54_RS07915	PF01817	Chorismate mutase type II
CH54_RS07920	PF01817	Chorismate mutase type II
CH54_RS07920	PF02153	Prephenate dehydrogenase
CH54_RS07925	PF00793	DAHP synthetase I family
CH54_RS07930	PF00072	Response regulator receiver domain
CH54_RS07930	PF04397	LytTr DNA-binding domain
CH54_RS07935	PF03605	CH54_RS07935
CH54_RS07940	PF04338	Protein of unknown function, DUF481
CH54_RS07945	PF01245	Ribosomal protein L19
CH54_RS07950	PF01746	tRNA (Guanine-1)-methyltransferase
CH54_RS07955	PF01782	RimM N-terminal domain
CH54_RS07955	PF05239	PRC-barrel domain
CH54_RS07960	PF00886	Ribosomal protein S16
CH54_RS07965	PF00448	SRP54-type protein, GTPase domain
CH54_RS07965	PF02881	SRP54-type protein, helical bundle domain
CH54_RS07965	PF02978	Signal peptide binding domain
CH54_RS07970	PF01578	CH54_RS07970
CH54_RS07975	PF01595	CH54_RS07975
CH54_RS07975	PF03471	Transporter associated domain
CH54_RS07980	PF02664	S-Ribosylhomocysteinase (LuxS)
CH54_RS07985	PF04262	Glutamate-cysteine ligase
CH54_RS07995	PF13419	Haloacid dehalogenase-like hydrolase
CH54_RS08020	PF02599	Global regulator protein family
CH54_RS08025	PF01411	tRNA synthetases class II (A)
CH54_RS08025	PF02272	DHHA1 domain
CH54_RS08025	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CH54_RS08030	PF02631	RecX family
CH54_RS08035	PF00154	recA bacterial DNA recombination protein
CH54_RS08040	PF02464	Competence-damaged protein
CH54_RS08045	PF07690	Major Facilitator Superfamily
CH54_RS08050	PF02613	Nitrate reductase delta subunit
CH54_RS08055	PF04976	CH54_RS08055
CH54_RS08060	PF12800	4Fe-4S binding domain
CH54_RS08060	PF13247	4Fe-4S dicluster domain
CH54_RS08065	PF00384	Molybdopterin oxidoreductase
CH54_RS08065	PF01568	Molydopterin dinucleotide binding domain
CH54_RS08065	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH54_RS08070	PF05681	CH54_RS08070
CH54_RS08070	PF05683	Fumarase C-terminus
CH54_RS08075	PF13433	Periplasmic binding protein domain
CH54_RS08080	PF02653	CH54_RS08080
CH54_RS08085	PF02653	CH54_RS08085
CH54_RS08090	PF00005	ABC transporter
CH54_RS08095	PF00005	ABC transporter
CH54_RS08100	PF03069	Acetamidase/Formamidase family
CH54_RS08105	PF13433	Periplasmic binding protein domain
CH54_RS08110	PF03861	ANTAR domain
CH54_RS08115	PF00795	Carbon-nitrogen hydrolase
CH54_RS08120	PF04198	Putative sugar-binding domain
CH54_RS08120	PF13545	Crp-like helix-turn-helix domain
CH54_RS08125	PF00106	short chain dehydrogenase
CH54_RS08130	PF03610	PTS system fructose IIA component
CH54_RS08135	PF03830	PTS system sorbose subfamily IIB component
CH54_RS08140	PF03609	CH54_RS08140
CH54_RS08145	PF03613	CH54_RS08145
CH54_RS08150	PF00107	Zinc-binding dehydrogenase
CH54_RS08150	PF08240	Alcohol dehydrogenase GroES-like domain
CH54_RS08155	PF12840	Helix-turn-helix domain
CH54_RS08160	PF00009	Elongation factor Tu GTP binding domain
CH54_RS08160	PF00679	Elongation factor G C-terminus
CH54_RS08160	PF03144	Elongation factor Tu domain 2
CH54_RS08160	PF03764	Elongation factor G, domain IV
CH54_RS08160	PF14492	Elongation Factor G, domain II
CH54_RS08170	PF00034	Cytochrome c
CH54_RS08170	PF03150	Di-haem cytochrome c peroxidase
CH54_RS08170	PF14376	CH54_RS08170
CH54_RS08175	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS08180	PF13561	Enoyl-(Acyl carrier protein) reductase
CH54_RS08185	PF00550	Phosphopantetheine attachment site
CH54_RS08190	PF01575	MaoC like domain
CH54_RS08195	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH54_RS08195	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH54_RS08200	PF02321	Outer membrane efflux protein
CH54_RS08205	PF00005	ABC transporter
CH54_RS08205	PF02687	CH54_RS08205
CH54_RS08205	PF12704	MacB-like periplasmic core domain
CH54_RS08210	PF13437	HlyD family secretion protein
CH54_RS08210	PF13533	Biotin-lipoyl like
CH54_RS08215	PF00005	ABC transporter
CH54_RS08215	PF00664	ABC transporter transmembrane region
CH54_RS08215	PF03412	Peptidase C39 family
CH54_RS08225	PF01323	DSBA-like thioredoxin domain
CH54_RS08230	PF15959	CH54_RS08230
CH54_RS08240	PF00419	Fimbrial protein
CH54_RS08245	PF00419	Fimbrial protein
CH54_RS08250	PF00419	Fimbrial protein
CH54_RS08255	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH54_RS08255	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH54_RS08260	PF00577	Outer membrane usher protein
CH54_RS08260	PF13953	PapC C-terminal domain
CH54_RS08260	PF13954	PapC N-terminal domain
CH54_RS08270	PF00419	Fimbrial protein
CH54_RS08280	PF04932	CH54_RS08280
CH54_RS08280	PF11846	CH54_RS08280
CH54_RS08280	PF15864	CH54_RS08280
CH54_RS08285	PF00488	MutS domain V
CH54_RS08285	PF01624	MutS domain I
CH54_RS08285	PF05188	MutS domain II
CH54_RS08285	PF05190	MutS family domain IV
CH54_RS08285	PF05192	MutS domain III
CH54_RS08290	PF00140	Sigma-70 factor, region 1
CH54_RS08290	PF04539	Sigma-70 region 3
CH54_RS08290	PF04542	Sigma-70 region 2
CH54_RS08290	PF04545	Sigma-70, region 4
CH54_RS08295	PF01476	LysM domain
CH54_RS08295	PF01551	Peptidase family M23
CH54_RS08300	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
CH54_RS08305	PF01975	Survival protein SurE
CH54_RS08310	PF01142	tRNA pseudouridine synthase D (TruD)
CH54_RS08315	PF02542	YgbB family
CH54_RS08320	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
CH54_RS08325	PF04977	Septum formation initiator
CH54_RS08330	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS08335	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS08340	PF00005	ABC transporter
CH54_RS08345	PF12084	CH54_RS08345
CH54_RS08350	PF01583	Adenylylsulphate kinase
CH54_RS08355	PF00009	Elongation factor Tu GTP binding domain
CH54_RS08360	PF01507	Phosphoadenosine phosphosulfate reductase family
CH54_RS08365	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH54_RS08365	PF10414	Sirohaem synthase dimerisation region
CH54_RS08365	PF13241	Putative NAD(P)-binding
CH54_RS08365	PF14824	Sirohaem biosynthesis protein central
CH54_RS08370	PF04389	Peptidase family M28
CH54_RS08375	PF01507	Phosphoadenosine phosphosulfate reductase family
CH54_RS08380	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
CH54_RS08380	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
CH54_RS08385	PF00175	Oxidoreductase NAD-binding domain
CH54_RS08385	PF00258	Flavodoxin
CH54_RS08385	PF00667	FAD binding domain
CH54_RS08390	PF01242	6-pyruvoyl tetrahydropterin synthase
CH54_RS08395	PF04055	Radical SAM superfamily
CH54_RS08395	PF13394	4Fe-4S single cluster domain
CH54_RS08400	PF00080	Copper/zinc superoxide dismutase (SODC)
CH54_RS08410	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS08420	PF00113	Enolase, C-terminal TIM barrel domain
CH54_RS08420	PF03952	Enolase, N-terminal domain
CH54_RS08425	PF00117	Glutamine amidotransferase class-I
CH54_RS08425	PF06418	CTP synthase N-terminus
CH54_RS08430	PF03819	MazG nucleotide pyrophosphohydrolase domain
CH54_RS08435	PF02824	TGS domain
CH54_RS08435	PF04607	Region found in RelA / SpoT proteins
CH54_RS08435	PF13291	ACT domain
CH54_RS08435	PF13328	HD domain
CH54_RS08445	PF00072	Response regulator receiver domain
CH54_RS08445	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS08445	PF00672	HAMP domain
CH54_RS08445	PF01627	Hpt domain
CH54_RS08445	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS08445	PF09984	CH54_RS08445
CH54_RS08450	PF00595	PDZ domain (Also known as DHR or GLGF)
CH54_RS08450	PF13180	PDZ domain
CH54_RS08450	PF13365	Trypsin-like peptidase domain
CH54_RS08455	PF01966	HD domain
CH54_RS08455	PF13286	Phosphohydrolase-associated domain
CH54_RS08460	PF01048	Phosphorylase superfamily
CH54_RS08465	PF01497	Periplasmic binding protein
CH54_RS08470	PF03458	CH54_RS08470
CH54_RS08475	PF01521	Iron-sulphur cluster biosynthesis
CH54_RS08480	PF00654	Voltage gated chloride channel
CH54_RS08485	PF00202	Aminotransferase class-III
CH54_RS08490	PF01032	FecCD transport family
CH54_RS08495	PF01497	Periplasmic binding protein
CH54_RS08500	PF00005	ABC transporter
CH54_RS08505	PF00905	Penicillin binding protein transpeptidase domain
CH54_RS08505	PF00912	Transglycosylase
CH54_RS08505	PF14812	CH54_RS08505
CH54_RS08505	PF14814	Bifunctional transglycosylase second domain
CH54_RS08510	PF00270	DEAD/DEAH box helicase
CH54_RS08510	PF00271	Helicase conserved C-terminal domain
CH54_RS08510	PF04408	Helicase associated domain (HA2)
CH54_RS08510	PF08482	CH54_RS08510
CH54_RS08515	PF02834	LigT like Phosphoesterase
CH54_RS08520	PF03749	Sugar fermentation stimulation protein
CH54_RS08525	PF01258	Prokaryotic dksA/traR C4-type zinc finger
CH54_RS08530	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CH54_RS08535	PF01743	Poly A polymerase head domain
CH54_RS08535	PF12626	Polymerase A arginine-rich C-terminus
CH54_RS08535	PF12627	Probable RNA and SrmB- binding site of polymerase A
CH54_RS08540	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
CH54_RS08545	PF02548	Ketopantoate hydroxymethyltransferase
CH54_RS08550	PF02569	Pantoate-beta-alanine ligase
CH54_RS08555	PF02261	Aspartate decarboxylase
CH54_RS08560	PF01522	Polysaccharide deacetylase
CH54_RS08565	PF01061	CH54_RS08565
CH54_RS08570	PF00005	ABC transporter
CH54_RS08575	PF00484	Carbonic anhydrase
CH54_RS08580	PF00156	Phosphoribosyl transferase domain
CH54_RS08590	PF00394	Multicopper oxidase
CH54_RS08590	PF07731	Multicopper oxidase
CH54_RS08590	PF07732	Multicopper oxidase
CH54_RS08590	PF10518	TAT (twin-arginine translocation) pathway signal sequence
CH54_RS08595	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
CH54_RS08600	PF01564	Spermine/spermidine synthase
CH54_RS08605	PF02675	S-adenosylmethionine decarboxylase
CH54_RS08610	PF07262	Protein of unknown function (DUF1436)
CH54_RS08615	PF05594	CH54_RS08615
CH54_RS08620	PF00892	EamA-like transporter family
CH54_RS08625	PF06062	CH54_RS08625
CH54_RS08630	PF00330	Aconitase family (aconitate hydratase)
CH54_RS08630	PF06434	Aconitate hydratase 2 N-terminus
CH54_RS08630	PF11791	Aconitate B N-terminal domain
CH54_RS08635	PF00593	TonB dependent receptor
CH54_RS08635	PF07715	TonB-dependent Receptor Plug Domain
CH54_RS08640	PF12833	Helix-turn-helix domain
CH54_RS08645	PF03496	ADP-ribosyltransferase exoenzyme
CH54_RS08650	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH54_RS08650	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS08655	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CH54_RS08655	PF00364	Biotin-requiring enzyme
CH54_RS08655	PF02817	e3 binding domain
CH54_RS08660	PF00456	Transketolase, thiamine diphosphate binding domain
CH54_RS08665	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS08665	PF07729	FCD domain
CH54_RS08670	PF00324	Amino acid permease
CH54_RS08675	PF17113	CH54_RS08675
CH54_RS08680	PF01510	N-acetylmuramoyl-L-alanine amidase
CH54_RS08685	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
CH54_RS08685	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
CH54_RS08690	PF13633	Prokaryotic N-terminal methylation site
CH54_RS08695	PF00437	Type II/IV secretion system protein
CH54_RS08695	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
CH54_RS08700	PF00482	Type II secretion system (T2SS), protein F
CH54_RS08705	PF00478	IMP dehydrogenase / GMP reductase domain
CH54_RS08710	PF01121	Dephospho-CoA kinase
CH54_RS08715	PF07072	Protein of unknown function (DUF1342)
CH54_RS08720	PF03884	Domain of unknown function (DUF329)
CH54_RS08725	PF00293	NUDIX domain
CH54_RS08730	PF01043	SecA preprotein cross-linking domain
CH54_RS08730	PF02810	SEC-C motif
CH54_RS08730	PF07516	SecA Wing and Scaffold domain
CH54_RS08730	PF07517	SecA DEAD-like domain
CH54_RS08735	PF06558	CH54_RS08735
CH54_RS08740	PF05258	CH54_RS08740
CH54_RS08745	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
CH54_RS08750	PF00091	Tubulin/FtsZ family, GTPase domain
CH54_RS08750	PF12327	FtsZ family, C-terminal domain
CH54_RS08755	PF02491	SHS2 domain inserted in FTSA
CH54_RS08755	PF14450	Cell division protein FtsA
CH54_RS08760	PF03799	Cell division protein FtsQ
CH54_RS08760	PF08478	POTRA domain, FtsQ-type
CH54_RS08765	PF01820	D-ala D-ala ligase N-terminus
CH54_RS08765	PF07478	D-ala D-ala ligase C-terminus
CH54_RS08770	PF01225	Mur ligase family, catalytic domain
CH54_RS08770	PF02875	Mur ligase family, glutamate ligase domain
CH54_RS08770	PF08245	Mur ligase middle domain
CH54_RS08775	PF03033	Glycosyltransferase family 28 N-terminal domain
CH54_RS08775	PF04101	Glycosyltransferase family 28 C-terminal domain
CH54_RS08780	PF01098	CH54_RS08780
CH54_RS08785	PF02875	Mur ligase family, glutamate ligase domain
CH54_RS08785	PF08245	Mur ligase middle domain
CH54_RS08790	PF00953	Glycosyl transferase family 4
CH54_RS08790	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
CH54_RS08795	PF01225	Mur ligase family, catalytic domain
CH54_RS08795	PF02875	Mur ligase family, glutamate ligase domain
CH54_RS08795	PF08245	Mur ligase middle domain
CH54_RS08800	PF01225	Mur ligase family, catalytic domain
CH54_RS08800	PF02875	Mur ligase family, glutamate ligase domain
CH54_RS08800	PF08245	Mur ligase middle domain
CH54_RS08805	PF00905	Penicillin binding protein transpeptidase domain
CH54_RS08805	PF03717	Penicillin-binding Protein dimerisation domain
CH54_RS08810	PF04999	CH54_RS08810
CH54_RS08815	PF01795	MraW methylase family
CH54_RS08820	PF02381	MraZ protein
CH54_RS08825	PF06610	CH54_RS08825
CH54_RS08830	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS08830	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH54_RS08835	PF01842	ACT domain
CH54_RS08835	PF10369	Small subunit of acetolactate synthase
CH54_RS08840	PF00205	Thiamine pyrophosphate enzyme, central domain
CH54_RS08840	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH54_RS08840	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH54_RS08845	PF00501	AMP-binding enzyme
CH54_RS08850	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS08850	PF03466	LysR substrate binding domain
CH54_RS08855	PF00682	HMGL-like
CH54_RS08855	PF08502	LeuA allosteric (dimerisation) domain
CH54_RS08860	PF00180	Isocitrate/isopropylmalate dehydrogenase
CH54_RS08865	PF00330	Aconitase family (aconitate hydratase)
CH54_RS08870	PF00694	Aconitase C-terminal domain
CH54_RS08875	PF01212	Beta-eliminating lyase
CH54_RS08880	PF07690	Major Facilitator Superfamily
CH54_RS08885	PF01228	Glycine radical
CH54_RS08885	PF02901	Pyruvate formate lyase
CH54_RS08890	PF04055	Radical SAM superfamily
CH54_RS08890	PF13353	4Fe-4S single cluster domain
CH54_RS08895	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS08895	PF12793	CH54_RS08895
CH54_RS08900	PF13416	Bacterial extracellular solute-binding protein
CH54_RS08905	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS08910	PF00005	ABC transporter
CH54_RS08915	PF09335	CH54_RS08915
CH54_RS08920	PF00136	DNA polymerase family B
CH54_RS08920	PF03104	DNA polymerase family B, exonuclease domain
CH54_RS08925	PF00176	SNF2 family N-terminal domain
CH54_RS08925	PF00271	Helicase conserved C-terminal domain
CH54_RS08925	PF12137	RNA polymerase recycling family C-terminal
CH54_RS08930	PF00849	RNA pseudouridylate synthase
CH54_RS08935	PF00226	DnaJ domain
CH54_RS08935	PF05099	Tellurite resistance protein TerB
CH54_RS08940	PF03968	OstA-like protein
CH54_RS08940	PF04453	Organic solvent tolerance protein
CH54_RS08945	PF00639	PPIC-type PPIASE domain
CH54_RS08945	PF09312	SurA N-terminal domain
CH54_RS08950	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
CH54_RS08955	PF00398	Ribosomal RNA adenine dimethylase
CH54_RS08960	PF04379	Protein of unknown function (DUF525)
CH54_RS08965	PF00149	Calcineurin-like phosphoesterase
CH54_RS08975	PF12582	CH54_RS08975
CH54_RS08980	PF00186	Dihydrofolate reductase
CH54_RS08985	PF12821	CH54_RS08985
CH54_RS08990	PF06738	CH54_RS08990
CH54_RS08995	PF01810	CH54_RS08995
CH54_RS09000	PF02142	MGS-like domain
CH54_RS09000	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CH54_RS09000	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CH54_RS09005	PF00117	Glutamine amidotransferase class-I
CH54_RS09005	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
CH54_RS09010	PF01113	Dihydrodipicolinate reductase, N-terminus
CH54_RS09010	PF05173	Dihydrodipicolinate reductase, C-terminus
CH54_RS09015	PF02401	LytB protein
CH54_RS09020	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH54_RS09025	PF01252	CH54_RS09025
CH54_RS09030	PF00133	tRNA synthetases class I (I, L, M and V)
CH54_RS09030	PF06827	Zinc finger found in FPG and IleRS
CH54_RS09030	PF08264	Anticodon-binding domain of tRNA
CH54_RS09035	PF01687	Riboflavin kinase
CH54_RS09035	PF06574	FAD synthetase
CH54_RS09040	PF01649	Ribosomal protein S20
CH54_RS09045	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS09045	PF03466	LysR substrate binding domain
CH54_RS09050	PF06965	Na+/H+ antiporter 1
CH54_RS09055	PF00226	DnaJ domain
CH54_RS09055	PF00684	DnaJ central domain
CH54_RS09055	PF01556	DnaJ C terminal domain
CH54_RS09060	PF00012	Hsp70 protein
CH54_RS09065	PF01184	CH54_RS09065
CH54_RS09075	PF07690	Major Facilitator Superfamily
CH54_RS09080	PF00994	Probable molybdopterin binding domain
CH54_RS09085	PF00923	Transaldolase
CH54_RS09090	PF03883	CH54_RS09090
CH54_RS09095	PF00291	Pyridoxal-phosphate dependent enzyme
CH54_RS09095	PF14821	Threonine synthase N terminus
CH54_RS09100	PF00288	GHMP kinases N terminal domain
CH54_RS09100	PF08544	GHMP kinases C terminal
CH54_RS09105	PF00696	Amino acid kinase family
CH54_RS09105	PF00742	Homoserine dehydrogenase
CH54_RS09105	PF01842	ACT domain
CH54_RS09105	PF03447	Homoserine dehydrogenase, NAD binding domain
CH54_RS09105	PF13840	ACT domain
CH54_RS09115	PF00072	Response regulator receiver domain
CH54_RS09115	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS09120	PF05981	CH54_RS09120
CH54_RS09125	PF06445	GyrI-like small molecule binding domain
CH54_RS09125	PF12833	Helix-turn-helix domain
CH54_RS09130	PF00300	Histidine phosphatase superfamily (branch 1)
CH54_RS09135	PF01931	Protein of unknown function DUF84
CH54_RS09140	PF01371	Trp repressor protein
CH54_RS09145	PF01464	Transglycosylase SLT domain
CH54_RS09145	PF14718	Soluble lytic murein transglycosylase L domain
CH54_RS09150	PF00122	E1-E2 ATPase
CH54_RS09150	PF00689	Cation transporting ATPase, C-terminus
CH54_RS09150	PF00690	Cation transporter/ATPase, N-terminus
CH54_RS09150	PF00702	haloacid dehalogenase-like hydrolase
CH54_RS09155	PF00005	ABC transporter
CH54_RS09155	PF12848	ABC transporter
CH54_RS09160	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS09160	PF03466	LysR substrate binding domain
CH54_RS09165	PF08240	Alcohol dehydrogenase GroES-like domain
CH54_RS09165	PF13602	Zinc-binding dehydrogenase
CH54_RS09170	PF01381	Helix-turn-helix
CH54_RS09170	PF13521	AAA domain
CH54_RS09180	PF13481	AAA domain
CH54_RS09180	PF13541	Subunit ChlI of Mg-chelatase
CH54_RS09185	PF12710	haloacid dehalogenase-like hydrolase
CH54_RS09190	PF10144	CH54_RS09190
CH54_RS09195	PF01048	Phosphorylase superfamily
CH54_RS09200	PF01676	Metalloenzyme superfamily
CH54_RS09205	PF00591	Glycosyl transferase family, a/b domain
CH54_RS09205	PF02885	Glycosyl transferase family, helical bundle domain
CH54_RS09205	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
CH54_RS09210	PF01791	DeoC/LacD family aldolase
CH54_RS09215	PF01773	Na+ dependent nucleoside transporter N-terminus
CH54_RS09215	PF07662	Na+ dependent nucleoside transporter C-terminus
CH54_RS09215	PF07670	Nucleoside recognition
CH54_RS09220	PF01026	TatD related DNase
CH54_RS09225	PF01734	Patatin-like phospholipase
CH54_RS09230	PF04972	BON domain
CH54_RS09235	PF00009	Elongation factor Tu GTP binding domain
CH54_RS09235	PF03144	Elongation factor Tu domain 2
CH54_RS09235	PF16658	CH54_RS09235
CH54_RS09240	PF00583	Acetyltransferase (GNAT) family
CH54_RS09245	PF03603	DNA polymerase III psi subunit
CH54_RS09250	PF05175	Methyltransferase small domain
CH54_RS09250	PF08468	Methyltransferase small domain N-terminal
CH54_RS09255	PF00248	Aldo/keto reductase family
CH54_RS09260	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS09260	PF03466	LysR substrate binding domain
CH54_RS09275	PF07256	CH54_RS09275
CH54_RS09280	PF00990	GGDEF domain
CH54_RS09285	PF00158	Sigma-54 interaction domain
CH54_RS09285	PF00989	PAS fold
CH54_RS09285	PF02954	Bacterial regulatory protein, Fis family
CH54_RS09290	PF10014	2OG-Fe dioxygenase
CH54_RS09295	PF07690	Major Facilitator Superfamily
CH54_RS09310	PF02543	Carbamoyltransferase
CH54_RS09310	PF16861	CH54_RS09310
CH54_RS09315	PF00534	Glycosyl transferases group 1
CH54_RS09320	PF00381	PTS HPr component phosphorylation site
CH54_RS09320	PF00391	PEP-utilising enzyme, mobile domain
CH54_RS09320	PF03610	PTS system fructose IIA component
CH54_RS09320	PF05524	PEP-utilising enzyme, N-terminal
CH54_RS09325	PF02734	DAK2 domain
CH54_RS09330	PF02733	Dak1 domain
CH54_RS09335	PF00465	Iron-containing alcohol dehydrogenase
CH54_RS09340	PF00873	AcrB/AcrD/AcrF family
CH54_RS09345	PF16576	CH54_RS09345
CH54_RS09350	PF02274	Amidinotransferase
CH54_RS09355	PF13520	Amino acid permease
CH54_RS09360	PF04932	CH54_RS09360
CH54_RS09365	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH54_RS09370	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH54_RS09370	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH54_RS09375	PF04198	Putative sugar-binding domain
CH54_RS09380	PF00005	ABC transporter
CH54_RS09385	PF02653	CH54_RS09385
CH54_RS09390	PF02653	CH54_RS09390
CH54_RS09395	PF13407	Periplasmic binding protein domain
CH54_RS09400	PF01791	DeoC/LacD family aldolase
CH54_RS09405	PF03992	Antibiotic biosynthesis monooxygenase
CH54_RS09410	PF10696	CH54_RS09410
CH54_RS09415	PF13391	CH54_RS09415
CH54_RS09420	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
CH54_RS09425	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
CH54_RS09430	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS09435	PF00583	Acetyltransferase (GNAT) family
CH54_RS09440	PF08857	Putative ParB-like nuclease
CH54_RS09445	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH54_RS09445	PF08479	POTRA domain, ShlB-type
CH54_RS09450	PF04829	CH54_RS09450
CH54_RS09450	PF05860	haemagglutination activity domain
CH54_RS09450	PF13018	CH54_RS09450
CH54_RS09450	PF13332	CH54_RS09450
CH54_RS09455	PF15572	CH54_RS09455
CH54_RS09460	PF13332	CH54_RS09460
CH54_RS09465	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
CH54_RS09465	PF04851	Type III restriction enzyme, res subunit
CH54_RS09470	PF01527	Transposase
CH54_RS09475	PF00665	Integrase core domain
CH54_RS09475	PF13276	CH54_RS09475
CH54_RS09480	PF02384	N-6 DNA Methylase
CH54_RS09480	PF12161	HsdM N-terminal domain
CH54_RS09485	PF13356	Domain of unknown function (DUF4102)
CH54_RS09495	PF03739	CH54_RS09495
CH54_RS09500	PF03739	CH54_RS09500
CH54_RS09505	PF00883	Cytosol aminopeptidase family, catalytic domain
CH54_RS09505	PF02789	Cytosol aminopeptidase family, N-terminal domain
CH54_RS09510	PF04364	DNA polymerase III chi subunit, HolC
CH54_RS09515	PF00133	tRNA synthetases class I (I, L, M and V)
CH54_RS09515	PF08264	Anticodon-binding domain of tRNA
CH54_RS09515	PF10458	Valyl tRNA synthetase tRNA binding arm
CH54_RS09525	PF00583	Acetyltransferase (GNAT) family
CH54_RS09530	PF06877	Regulator of ribonuclease activity B
CH54_RS09535	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
CH54_RS09535	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
CH54_RS09540	PF04074	Domain of unknown function (DUF386)
CH54_RS09545	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS09550	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS09555	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS09555	PF12911	CH54_RS09555
CH54_RS09560	PF00005	ABC transporter
CH54_RS09565	PF00005	ABC transporter
CH54_RS09570	PF03477	ATP cone domain
CH54_RS09570	PF13597	Anaerobic ribonucleoside-triphosphate reductase
CH54_RS09575	PF13353	4Fe-4S single cluster domain
CH54_RS09580	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS09580	PF07702	UTRA domain
CH54_RS09585	PF06754	CH54_RS09585
CH54_RS09590	PF05845	Bacterial phosphonate metabolism protein (PhnH)
CH54_RS09595	PF05861	CH54_RS09595
CH54_RS09600	PF06007	CH54_RS09600
CH54_RS09605	PF00005	ABC transporter
CH54_RS09610	PF00005	ABC transporter
CH54_RS09615	PF07969	Amidohydrolase family
CH54_RS09620	PF13238	AAA domain
CH54_RS09625	PF12706	Beta-lactamase superfamily domain
CH54_RS09630	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CH54_RS09640	PF05426	Alginate lyase
CH54_RS09645	PF00005	ABC transporter
CH54_RS09645	PF08402	TOBE domain
CH54_RS09650	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS09655	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS09660	PF01547	Bacterial extracellular solute-binding protein
CH54_RS09665	PF05426	Alginate lyase
CH54_RS09670	PF05426	Alginate lyase
CH54_RS09670	PF07940	Heparinase II/III-like protein
CH54_RS09675	PF01276	Orn/Lys/Arg decarboxylase, major domain
CH54_RS09675	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
CH54_RS09675	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
CH54_RS09680	PF13520	Amino acid permease
CH54_RS09685	PF01541	GIY-YIG catalytic domain
CH54_RS09690	PF00583	Acetyltransferase (GNAT) family
CH54_RS09695	PF02036	SCP-2 sterol transfer family
CH54_RS09700	PF01136	CH54_RS09700
CH54_RS09705	PF01136	CH54_RS09705
CH54_RS09710	PF00296	Luciferase-like monooxygenase
CH54_RS09715	PF00270	DEAD/DEAH box helicase
CH54_RS09715	PF00271	Helicase conserved C-terminal domain
CH54_RS09715	PF03880	DbpA RNA binding domain
CH54_RS09715	PF12343	CH54_RS09715
CH54_RS09720	PF07719	Tetratricopeptide repeat
CH54_RS09720	PF13181	Tetratricopeptide repeat
CH54_RS09725	PF00013	KH domain
CH54_RS09725	PF00575	S1 RNA binding domain
CH54_RS09725	PF01138	3' exoribonuclease family, domain 1
CH54_RS09725	PF03725	3' exoribonuclease family, domain 2
CH54_RS09725	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
CH54_RS09730	PF00312	Ribosomal protein S15
CH54_RS09735	PF01509	TruB family pseudouridylate synthase (N terminal domain)
CH54_RS09735	PF09157	Pseudouridine synthase II TruB, C-terminal
CH54_RS09735	PF16198	CH54_RS09735
CH54_RS09740	PF02033	Ribosome-binding factor A
CH54_RS09745	PF00009	Elongation factor Tu GTP binding domain
CH54_RS09745	PF03144	Elongation factor Tu domain 2
CH54_RS09745	PF04760	Translation initiation factor IF-2, N-terminal region
CH54_RS09745	PF08364	CH54_RS09745
CH54_RS09745	PF11987	Translation-initiation factor 2
CH54_RS09750	PF08529	NusA N-terminal domain
CH54_RS09750	PF13184	NusA-like KH domain
CH54_RS09750	PF14520	Helix-hairpin-helix domain
CH54_RS09755	PF02576	Uncharacterised BCR, YhbC family COG0779
CH54_RS09770	PF03840	Preprotein translocase SecG subunit
CH54_RS09775	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CH54_RS09775	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CH54_RS09775	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CH54_RS09775	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CH54_RS09780	PF00809	Pterin binding enzyme
CH54_RS09785	PF00004	ATPase family associated with various cellular activities (AAA)
CH54_RS09785	PF01434	Peptidase family M41
CH54_RS09785	PF06480	FtsH Extracellular
CH54_RS09790	PF01728	FtsJ-like methyltransferase
CH54_RS09795	PF01985	CRS1 / YhbY (CRM) domain
CH54_RS09800	PF01272	Transcription elongation factor, GreA/GreB, C-term
CH54_RS09800	PF03449	Transcription elongation factor, N-terminal
CH54_RS09805	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
CH54_RS09810	PF00072	Response regulator receiver domain
CH54_RS09810	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS09815	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS09815	PF00672	HAMP domain
CH54_RS09815	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS09820	PF01018	GTP1/OBG
CH54_RS09820	PF01926	50S ribosome-binding GTPase
CH54_RS09825	PF00892	EamA-like transporter family
CH54_RS09830	PF01016	Ribosomal L27 protein
CH54_RS09835	PF00829	Ribosomal prokaryotic L21 protein
CH54_RS09840	PF00348	Polyprenyl synthetase
CH54_RS09845	PF02316	Mu DNA-binding domain
CH54_RS09850	PF13693	Winged helix-turn-helix DNA-binding
CH54_RS09855	PF00056	lactate/malate dehydrogenase, NAD binding domain
CH54_RS09855	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
CH54_RS09860	PF01316	Arginine repressor, DNA binding domain
CH54_RS09860	PF02863	Arginine repressor, C-terminal domain
CH54_RS09865	PF07338	Protein of unknown function (DUF1471)
CH54_RS09870	PF07338	Protein of unknown function (DUF1471)
CH54_RS09875	PF01225	Mur ligase family, catalytic domain
CH54_RS09875	PF02875	Mur ligase family, glutamate ligase domain
CH54_RS09875	PF08245	Mur ligase middle domain
CH54_RS09880	PF00316	Fructose-1-6-bisphosphatase
CH54_RS09885	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH54_RS09885	PF00672	HAMP domain
CH54_RS09885	PF02203	Tar ligand binding domain homologue
CH54_RS09890	PF00719	Inorganic pyrophosphatase
CH54_RS09895	PF06094	AIG2-like family
CH54_RS09900	PF04357	CH54_RS09900
CH54_RS09905	PF01103	Surface antigen
CH54_RS09905	PF07244	Surface antigen variable number repeat
CH54_RS09910	PF01625	Peptide methionine sulfoxide reductase
CH54_RS09915	PF00571	CBS domain
CH54_RS09915	PF01595	CH54_RS09915
CH54_RS09915	PF03471	Transporter associated domain
CH54_RS09920	PF06526	Protein of unknown function (DUF1107)
CH54_RS09925	PF09695	CH54_RS09925
CH54_RS09930	PF00459	Inositol monophosphatase family
CH54_RS09935	PF00149	Calcineurin-like phosphoesterase
CH54_RS09935	PF02872	5'-nucleotidase, C-terminal domain
CH54_RS09940	PF01814	Hemerythrin HHE cation binding domain
CH54_RS09940	PF04405	CH54_RS09940
CH54_RS09945	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH54_RS09945	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
CH54_RS09950	PF04225	Opacity-associated protein A LysM-like domain
CH54_RS09950	PF08525	CH54_RS09950
CH54_RS09955	PF12582	CH54_RS09955
CH54_RS09960	PF01281	Ribosomal protein L9, N-terminal domain
CH54_RS09960	PF03948	Ribosomal protein L9, C-terminal domain
CH54_RS09965	PF01084	Ribosomal protein S18
CH54_RS09970	PF00436	Single-strand binding protein family
CH54_RS09975	PF01250	Ribosomal protein S6
CH54_RS09980	PF07338	Protein of unknown function (DUF1471)
CH54_RS09985	PF00326	Prolyl oligopeptidase family
CH54_RS09990	PF07338	Protein of unknown function (DUF1471)
CH54_RS09995	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
CH54_RS09995	PF02770	Acyl-CoA dehydrogenase, middle domain
CH54_RS10000	PF00588	SpoU rRNA Methylase family
CH54_RS10000	PF08032	RNA 2'-O ribose methyltransferase substrate binding
CH54_RS10005	PF00575	S1 RNA binding domain
CH54_RS10005	PF00773	RNB domain
CH54_RS10005	PF08206	Ribonuclease B OB domain
CH54_RS10005	PF08461	Ribonuclease R winged-helix domain
CH54_RS10010	PF02082	Transcriptional regulator
CH54_RS10015	PF00709	Adenylosuccinate synthetase
CH54_RS10020	PF09838	CH54_RS10020
CH54_RS10025	PF01145	SPFH domain / Band 7 family
CH54_RS10030	PF01145	SPFH domain / Band 7 family
CH54_RS10030	PF12221	CH54_RS10030
CH54_RS10035	PF01926	50S ribosome-binding GTPase
CH54_RS10035	PF13167	CH54_RS10035
CH54_RS10035	PF16360	CH54_RS10035
CH54_RS10045	PF01715	IPP transferase
CH54_RS10050	PF01119	DNA mismatch repair protein, C-terminal domain
CH54_RS10050	PF08676	MutL C terminal dimerisation domain
CH54_RS10050	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS10055	PF01476	LysM domain
CH54_RS10055	PF01520	N-acetylmuramoyl-L-alanine amidase
CH54_RS10055	PF11741	AMIN domain
CH54_RS10060	PF02367	Uncharacterised P-loop hydrolase UPF0079
CH54_RS10065	PF01256	Carbohydrate kinase
CH54_RS10065	PF03853	YjeF-related protein N-terminus
CH54_RS10070	PF08331	CH54_RS10070
CH54_RS10070	PF13484	CH54_RS10070
CH54_RS10095	PF00929	Exonuclease
CH54_RS10100	PF03193	Protein of unknown function, DUF258
CH54_RS10105	PF02666	CH54_RS10105
CH54_RS10110	PF00924	Mechanosensitive ion channel
CH54_RS10110	PF12794	CH54_RS10110
CH54_RS10110	PF12795	CH54_RS10110
CH54_RS10115	PF00152	tRNA synthetases class II (D, K and N)
CH54_RS10120	PF00890	FAD binding domain
CH54_RS10120	PF02910	Fumarate reductase flavoprotein C-term
CH54_RS10125	PF13085	2Fe-2S iron-sulfur cluster binding domain
CH54_RS10125	PF13183	4Fe-4S dicluster domain
CH54_RS10130	PF02300	Fumarate reductase subunit C
CH54_RS10135	PF02313	Fumarate reductase subunit D
CH54_RS10140	PF08212	Lipocalin-like domain
CH54_RS10145	PF00893	Small Multidrug Resistance protein
CH54_RS10150	PF08085	CH54_RS10150
CH54_RS10155	PF01132	Elongation factor P (EF-P) OB domain
CH54_RS10155	PF08207	Elongation factor P (EF-P) KOW-like domain
CH54_RS10155	PF09285	Elongation factor P, C-terminal
CH54_RS10160	PF04055	Radical SAM superfamily
CH54_RS10160	PF13353	4Fe-4S single cluster domain
CH54_RS10165	PF13698	CH54_RS10165
CH54_RS10170	PF00118	TCP-1/cpn60 chaperonin family
CH54_RS10175	PF00166	Chaperonin 10 Kd subunit
CH54_RS10180	PF04186	CH54_RS10180
CH54_RS10185	PF00206	Lyase
CH54_RS10185	PF10415	Fumarase C C-terminus
CH54_RS10190	PF03605	CH54_RS10190
CH54_RS10195	PF03091	CutA1 divalent ion tolerance protein
CH54_RS10200	PF02683	CH54_RS10200
CH54_RS10200	PF11412	Disulphide bond corrector protein DsbC
CH54_RS10200	PF13899	Thioredoxin-like
CH54_RS10205	PF00384	Molybdopterin oxidoreductase
CH54_RS10205	PF01568	Molydopterin dinucleotide binding domain
CH54_RS10205	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH54_RS10210	PF13247	4Fe-4S dicluster domain
CH54_RS10215	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS10215	PF13247	4Fe-4S dicluster domain
CH54_RS10215	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CH54_RS10220	PF07690	Major Facilitator Superfamily
CH54_RS10225	PF04295	CH54_RS10225
CH54_RS10225	PF08666	SAF domain
CH54_RS10230	PF05651	CH54_RS10230
CH54_RS10230	PF13556	PucR C-terminal helix-turn-helix domain
CH54_RS10235	PF02595	Glycerate kinase family
CH54_RS10240	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
CH54_RS10240	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
CH54_RS10245	PF03328	HpcH/HpaI aldolase/citrate lyase family
CH54_RS10250	PF00440	Bacterial regulatory proteins, tetR family
CH54_RS10260	PF00589	Phage integrase family
CH54_RS10260	PF13495	Phage integrase, N-terminal SAM-like domain
CH54_RS10280	PF00665	Integrase core domain
CH54_RS10280	PF13936	Helix-turn-helix domain
CH54_RS10290	PF00580	UvrD/REP helicase N-terminal domain
CH54_RS10290	PF13245	Part of AAA domain
CH54_RS10295	PF13175	AAA ATPase domain
CH54_RS10300	PF07514	Putative helicase
CH54_RS10300	PF07515	Protein of unknown function (DUF1528)
CH54_RS10305	PF01223	DNA/RNA non-specific endonuclease
CH54_RS10310	PF06755	CH54_RS10310
CH54_RS10315	PF08401	CH54_RS10315
CH54_RS10325	PF14015	CH54_RS10325
CH54_RS10330	PF04245	CH54_RS10330
CH54_RS10335	PF04607	Region found in RelA / SpoT proteins
CH54_RS10340	PF12834	CH54_RS10340
CH54_RS10340	PF12835	Integrase
CH54_RS10370	PF05973	CH54_RS10370
CH54_RS10375	PF00665	Integrase core domain
CH54_RS10375	PF13276	CH54_RS10375
CH54_RS10380	PF01527	Transposase
CH54_RS10390	PF07916	CH54_RS10390
CH54_RS10405	PF06834	CH54_RS10405
CH54_RS10410	PF07511	CH54_RS10410
CH54_RS10415	PF05973	CH54_RS10415
CH54_RS10420	PF13744	Helix-turn-helix domain
CH54_RS10460	PF05973	CH54_RS10460
CH54_RS10465	PF13744	Helix-turn-helix domain
CH54_RS10470	PF01381	Helix-turn-helix
CH54_RS10485	PF11130	CH54_RS10485
CH54_RS10495	PF03743	Bacterial conjugation TrbI-like protein
CH54_RS10500	PF11920	CH54_RS10500
CH54_RS10505	PF11444	CH54_RS10505
CH54_RS10510	PF11990	CH54_RS10510
CH54_RS10515	PF11190	CH54_RS10515
CH54_RS10520	PF11660	CH54_RS10520
CH54_RS10525	PF09686	CH54_RS10525
CH54_RS10530	PF13676	TIR domain
CH54_RS10535	PF13289	CH54_RS10535
CH54_RS10540	PF08937	MTH538 TIR-like domain (DUF1863)
CH54_RS10545	PF05729	NACHT domain
CH54_RS10550	PF14348	CH54_RS10550
CH54_RS10555	PF12696	TraM recognition site of TraD and TraG
CH54_RS10560	PF11072	CH54_RS10560
CH54_RS10575	PF00665	Integrase core domain
CH54_RS10575	PF13276	CH54_RS10575
CH54_RS10580	PF01527	Transposase
CH54_RS10600	PF13730	CH54_RS10600
CH54_RS10605	PF11198	CH54_RS10605
CH54_RS10610	PF01258	Prokaryotic dksA/traR C4-type zinc finger
CH54_RS10620	PF00772	DnaB-like helicase N terminal domain
CH54_RS10620	PF03796	DnaB-like helicase C terminal domain
CH54_RS10625	PF13614	AAA domain
CH54_RS10630	PF10636	Hemin uptake protein hemP
CH54_RS10635	PF00593	TonB dependent receptor
CH54_RS10635	PF07715	TonB-dependent Receptor Plug Domain
CH54_RS10640	PF05171	Haemin-degrading HemS
CH54_RS10645	PF01497	Periplasmic binding protein
CH54_RS10650	PF01032	FecCD transport family
CH54_RS10655	PF00005	ABC transporter
CH54_RS10660	PF00155	Aminotransferase class I and II
CH54_RS10660	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS10665	PF06568	CH54_RS10665
CH54_RS10670	PF00593	TonB dependent receptor
CH54_RS10670	PF07715	TonB-dependent Receptor Plug Domain
CH54_RS10675	PF00924	Mechanosensitive ion channel
CH54_RS10675	PF12607	CH54_RS10675
CH54_RS10680	PF01206	Sulfurtransferase TusA
CH54_RS10685	PF04143	CH54_RS10685
CH54_RS10690	PF01312	FlhB HrpN YscU SpaS Family
CH54_RS10695	PF01311	CH54_RS10695
CH54_RS10700	PF01313	CH54_RS10700
CH54_RS10705	PF00813	CH54_RS10705
CH54_RS10710	PF01052	Surface presentation of antigens (SPOA)
CH54_RS10710	PF06622	CH54_RS10710
CH54_RS10725	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH54_RS10730	PF00771	FHIPEP family
CH54_RS10740	PF07201	HrpJ-like domain
CH54_RS10740	PF09059	TyeA
CH54_RS10750	PF13327	CH54_RS10750
CH54_RS10755	PF01514	Secretory protein of YscJ/FliF family
CH54_RS10760	PF17001	CH54_RS10760
CH54_RS10765	PF06287	CH54_RS10765
CH54_RS10770	PF09392	Type III secretion needle MxiH like
CH54_RS10775	PF12833	Helix-turn-helix domain
CH54_RS10785	PF14559	Tetratricopeptide repeat
CH54_RS10795	PF05802	CH54_RS10795
CH54_RS10800	PF04888	CH54_RS10800
CH54_RS10810	PF03433	EspA-like secreted protein
CH54_RS10820	PF08988	Protein of unknown function (DUF1895)
CH54_RS10825	PF16693	CH54_RS10825
CH54_RS10830	PF00263	CH54_RS10830
CH54_RS10830	PF03958	Bacterial type II/III secretion system short domain
CH54_RS10840	PF00072	Response regulator receiver domain
CH54_RS10840	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS10840	PF01627	Hpt domain
CH54_RS10840	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS10845	PF00072	Response regulator receiver domain
CH54_RS10845	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS10850	PF00375	Sodium:dicarboxylate symporter family
CH54_RS10855	PF00501	AMP-binding enzyme
CH54_RS10855	PF13193	AMP-binding enzyme C-terminal domain
CH54_RS10855	PF16177	CH54_RS10855
CH54_RS10860	PF04341	CH54_RS10860
CH54_RS10865	PF00474	Sodium:solute symporter family
CH54_RS10895	PF00132	Bacterial transferase hexapeptide (six repeats)
CH54_RS10900	PF01488	Shikimate / quinate 5-dehydrogenase
CH54_RS10900	PF08501	Shikimate dehydrogenase substrate binding domain
CH54_RS10905	PF01300	Telomere recombination
CH54_RS10910	PF01396	CH54_RS10910
CH54_RS10915	PF04361	CH54_RS10915
CH54_RS10920	PF02481	DNA recombination-mediator protein A
CH54_RS10925	PF01327	Polypeptide deformylase
CH54_RS10930	PF00551	Formyl transferase
CH54_RS10930	PF02911	Formyl transferase, C-terminal domain
CH54_RS10935	PF01029	NusB family
CH54_RS10935	PF01189	NOL1/NOP2/sun family
CH54_RS10940	PF02080	TrkA-C domain
CH54_RS10940	PF02254	TrkA-N domain
CH54_RS10945	PF01741	Large-conductance mechanosensitive channel, MscL
CH54_RS10950	PF03889	CH54_RS10950
CH54_RS10955	PF13411	MerR HTH family regulatory protein
CH54_RS10960	PF09350	CH54_RS10960
CH54_RS10965	PF01196	Ribosomal protein L17
CH54_RS10970	PF01000	RNA polymerase Rpb3/RpoA insert domain
CH54_RS10970	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
CH54_RS10970	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
CH54_RS10975	PF00163	Ribosomal protein S4/S9 N-terminal domain
CH54_RS10975	PF01479	S4 domain
CH54_RS10980	PF00411	Ribosomal protein S11
CH54_RS10985	PF00416	Ribosomal protein S13/S18
CH54_RS10990	PF00444	Ribosomal protein L36
CH54_RS10995	PF00344	SecY translocase
CH54_RS11000	PF00828	Ribosomal protein L18e/L15
CH54_RS11005	PF00327	Ribosomal protein L30p/L7e
CH54_RS11010	PF00333	Ribosomal protein S5, N-terminal domain
CH54_RS11010	PF03719	Ribosomal protein S5, C-terminal domain
CH54_RS11015	PF00861	Ribosomal L18p/L5e family
CH54_RS11020	PF00347	Ribosomal protein L6
CH54_RS11025	PF00410	Ribosomal protein S8
CH54_RS11030	PF00253	Ribosomal protein S14p/S29e
CH54_RS11035	PF00281	Ribosomal protein L5
CH54_RS11035	PF00673	ribosomal L5P family C-terminus
CH54_RS11040	PF00467	KOW motif
CH54_RS11040	PF17136	CH54_RS11040
CH54_RS11045	PF00238	Ribosomal protein L14p/L23e
CH54_RS11050	PF00366	Ribosomal protein S17
CH54_RS11055	PF00831	Ribosomal L29 protein
CH54_RS11060	PF00252	Ribosomal protein L16p/L10e
CH54_RS11065	PF00189	Ribosomal protein S3, C-terminal domain
CH54_RS11065	PF07650	KH domain
CH54_RS11070	PF00237	Ribosomal protein L22p/L17e
CH54_RS11075	PF00203	Ribosomal protein S19
CH54_RS11080	PF00181	Ribosomal Proteins L2, RNA binding domain
CH54_RS11080	PF03947	Ribosomal Proteins L2, C-terminal domain
CH54_RS11085	PF00276	Ribosomal protein L23
CH54_RS11090	PF00573	Ribosomal protein L4/L1 family
CH54_RS11095	PF00297	Ribosomal protein L3
CH54_RS11100	PF00338	Ribosomal protein S10p/S20e
CH54_RS11105	PF00210	Ferritin-like domain
CH54_RS11110	PF04324	BFD-like [2Fe-2S] binding domain
CH54_RS11115	PF00009	Elongation factor Tu GTP binding domain
CH54_RS11115	PF03143	Elongation factor Tu C-terminal domain
CH54_RS11115	PF03144	Elongation factor Tu domain 2
CH54_RS11120	PF00009	Elongation factor Tu GTP binding domain
CH54_RS11120	PF00679	Elongation factor G C-terminus
CH54_RS11120	PF03144	Elongation factor Tu domain 2
CH54_RS11120	PF03764	Elongation factor G, domain IV
CH54_RS11120	PF14492	Elongation Factor G, domain II
CH54_RS11125	PF00177	Ribosomal protein S7p/S5e
CH54_RS11130	PF00164	Ribosomal protein S12/S23
CH54_RS11135	PF04077	DsrH like protein
CH54_RS11140	PF02635	DsrE/DsrF-like family
CH54_RS11145	PF02635	DsrE/DsrF-like family
CH54_RS11150	PF08348	CH54_RS11150
CH54_RS11150	PF13309	CH54_RS11150
CH54_RS11155	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH54_RS11155	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
CH54_RS11160	PF04102	SlyX
CH54_RS11165	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH54_RS11170	PF09526	CH54_RS11170
CH54_RS11175	PF00999	Sodium/hydrogen exchanger family
CH54_RS11175	PF02254	TrkA-N domain
CH54_RS11180	PF02525	Flavodoxin-like fold
CH54_RS11185	PF00005	ABC transporter
CH54_RS11185	PF12848	ABC transporter
CH54_RS11195	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH54_RS11200	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
CH54_RS11205	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS11210	PF00005	ABC transporter
CH54_RS11215	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
CH54_RS11220	PF02567	Phenazine biosynthesis-like protein
CH54_RS11225	PF01810	CH54_RS11225
CH54_RS11230	PF00561	alpha/beta hydrolase fold
CH54_RS11235	PF06794	Uncharacterised protein family (UPF0270)
CH54_RS11240	PF00485	Phosphoribulokinase / Uridine kinase family
CH54_RS11245	PF02566	OsmC-like protein
CH54_RS11250	PF00027	Cyclic nucleotide-binding domain
CH54_RS11250	PF00325	Bacterial regulatory proteins, crp family
CH54_RS11255	PF12805	CH54_RS11255
CH54_RS11255	PF13515	CH54_RS11255
CH54_RS11260	PF00202	Aminotransferase class-III
CH54_RS11265	PF00117	Glutamine amidotransferase class-I
CH54_RS11270	PF07751	CH54_RS11270
CH54_RS11275	PF05872	CH54_RS11275
CH54_RS11280	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
CH54_RS11285	PF02056	Family 4 glycosyl hydrolase
CH54_RS11285	PF11975	Family 4 glycosyl hydrolase C-terminal domain
CH54_RS11290	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS11290	PF13377	Periplasmic binding protein-like domain
CH54_RS11295	PF07690	Major Facilitator Superfamily
CH54_RS11300	PF07969	Amidohydrolase family
CH54_RS11305	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
CH54_RS11305	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
CH54_RS11305	PF04324	BFD-like [2Fe-2S] binding domain
CH54_RS11305	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS11310	PF13806	Rieske-like [2Fe-2S] domain
CH54_RS11315	PF01226	Formate/nitrite transporter
CH54_RS11320	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH54_RS11320	PF10414	Sirohaem synthase dimerisation region
CH54_RS11320	PF13241	Putative NAD(P)-binding
CH54_RS11320	PF14824	Sirohaem biosynthesis protein central
CH54_RS11325	PF00579	tRNA synthetases class I (W and Y)
CH54_RS11330	PF13419	Haloacid dehalogenase-like hydrolase
CH54_RS11335	PF00834	Ribulose-phosphate 3 epimerase family
CH54_RS11340	PF02086	D12 class N6 adenine-specific DNA methyltransferase
CH54_RS11345	PF05036	Sporulation related domain
CH54_RS11350	PF01761	3-dehydroquinate synthase
CH54_RS11355	PF01202	Shikimate kinase
CH54_RS11360	PF00263	CH54_RS11360
CH54_RS11360	PF03958	Bacterial type II/III secretion system short domain
CH54_RS11375	PF05137	CH54_RS11375
CH54_RS11380	PF11104	Type IV pilus assembly protein PilM;
CH54_RS11385	PF00905	Penicillin binding protein transpeptidase domain
CH54_RS11385	PF00912	Transglycosylase
CH54_RS11385	PF17092	CH54_RS11385
CH54_RS11390	PF00293	NUDIX domain
CH54_RS11395	PF07095	Intracellular growth attenuator protein IgaA
CH54_RS11400	PF13419	Haloacid dehalogenase-like hydrolase
CH54_RS11405	PF01479	S4 domain
CH54_RS11410	PF01430	Hsp33 protein
CH54_RS11415	PF01293	Phosphoenolpyruvate carboxykinase
CH54_RS11420	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS11420	PF00672	HAMP domain
CH54_RS11420	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS11425	PF00072	Response regulator receiver domain
CH54_RS11425	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS11430	PF01272	Transcription elongation factor, GreA/GreB, C-term
CH54_RS11430	PF03449	Transcription elongation factor, N-terminal
CH54_RS11450	PF07690	Major Facilitator Superfamily
CH54_RS11455	PF00575	S1 RNA binding domain
CH54_RS11455	PF09371	Tex-like protein N-terminal domain
CH54_RS11455	PF12836	Helix-hairpin-helix motif
CH54_RS11455	PF16921	CH54_RS11455
CH54_RS11460	PF04023	FeoA domain
CH54_RS11465	PF02421	Ferrous iron transport protein B
CH54_RS11465	PF07664	CH54_RS11465
CH54_RS11465	PF07670	Nucleoside recognition
CH54_RS11470	PF09012	FeoC like transcriptional regulator
CH54_RS11475	PF07338	Protein of unknown function (DUF1471)
CH54_RS11480	PF00561	alpha/beta hydrolase fold
CH54_RS11490	PF01106	NifU-like domain
CH54_RS11490	PF01521	Iron-sulphur cluster biosynthesis
CH54_RS11495	PF02446	4-alpha-glucanotransferase
CH54_RS11500	PF00343	Carbohydrate phosphorylase
CH54_RS11505	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS11510	PF00581	Rhodanese-like domain
CH54_RS11515	PF01694	Rhomboid family
CH54_RS11515	PF12122	Protein of unknown function (DUF3582)
CH54_RS11520	PF00455	CH54_RS11520
CH54_RS11520	PF08220	DeoR-like helix-turn-helix domain
CH54_RS11530	PF01266	FAD dependent oxidoreductase
CH54_RS11530	PF16901	CH54_RS11530
CH54_RS11535	PF00343	Carbohydrate phosphorylase
CH54_RS11540	PF00534	Glycosyl transferases group 1
CH54_RS11540	PF08323	Starch synthase catalytic domain
CH54_RS11545	PF00483	Nucleotidyl transferase
CH54_RS11550	PF00128	Alpha amylase, catalytic domain
CH54_RS11550	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
CH54_RS11555	PF00128	Alpha amylase, catalytic domain
CH54_RS11555	PF02806	Alpha amylase, C-terminal all-beta domain
CH54_RS11555	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
CH54_RS11560	PF06580	CH54_RS11560
CH54_RS11560	PF07694	5TMR of 5TMR-LYT
CH54_RS11565	PF00005	ABC transporter
CH54_RS11565	PF00664	ABC transporter transmembrane region
CH54_RS11565	PF03412	Peptidase C39 family
CH54_RS11570	PF13437	HlyD family secretion protein
CH54_RS11585	PF00535	Glycosyl transferase family 2
CH54_RS11600	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CH54_RS11600	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CH54_RS11605	PF01914	CH54_RS11605
CH54_RS11610	PF01202	Shikimate kinase
CH54_RS11615	PF02447	CH54_RS11615
CH54_RS11620	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS11620	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH54_RS11625	PF02678	Pirin
CH54_RS11630	PF00583	Acetyltransferase (GNAT) family
CH54_RS11635	PF01261	Xylose isomerase-like TIM barrel
CH54_RS11640	PF01261	Xylose isomerase-like TIM barrel
CH54_RS11645	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH54_RS11645	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
CH54_RS11650	PF00205	Thiamine pyrophosphate enzyme, central domain
CH54_RS11650	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH54_RS11650	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH54_RS11655	PF00294	pfkB family carbohydrate kinase
CH54_RS11655	PF09863	Uncharacterized protein conserved in bacteria (DUF2090)
CH54_RS11660	PF01380	SIS domain
CH54_RS11660	PF01418	Helix-turn-helix domain, rpiR family
CH54_RS11665	PF04962	KduI/IolB family
CH54_RS11670	PF00171	Aldehyde dehydrogenase family
CH54_RS11675	PF01261	Xylose isomerase-like TIM barrel
CH54_RS11685	PF00419	Fimbrial protein
CH54_RS11690	PF00419	Fimbrial protein
CH54_RS11695	PF00577	Outer membrane usher protein
CH54_RS11695	PF13953	PapC C-terminal domain
CH54_RS11695	PF13954	PapC N-terminal domain
CH54_RS11700	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH54_RS11700	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH54_RS11705	PF00419	Fimbrial protein
CH54_RS11710	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS11715	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS11725	PF03486	HI0933-like protein
CH54_RS11730	PF01384	CH54_RS11730
CH54_RS11735	PF10625	CH54_RS11735
CH54_RS11740	PF00582	Universal stress protein family
CH54_RS11745	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CH54_RS11745	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
CH54_RS11750	PF08548	Peptidase M10 serralysin C terminal
CH54_RS11755	PF04445	Putative SAM-dependent methyltransferase
CH54_RS11760	PF01432	Peptidase family M3
CH54_RS11765	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
CH54_RS11770	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH54_RS11770	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS11780	PF02611	CDP-diacylglycerol pyrophosphatase
CH54_RS11785	PF05170	CH54_RS11785
CH54_RS11790	PF00563	EAL domain
CH54_RS11795	PF01361	Tautomerase enzyme
CH54_RS11800	PF00294	pfkB family carbohydrate kinase
CH54_RS11805	PF00675	Insulinase (Peptidase family M16)
CH54_RS11805	PF05193	Peptidase M16 inactive domain
CH54_RS11810	PF00375	Sodium:dicarboxylate symporter family
CH54_RS11815	PF06917	Periplasmic pectate lyase
CH54_RS11820	PF06178	Oligogalacturonate-specific porin protein (KdgM)
CH54_RS11825	PF00563	EAL domain
CH54_RS11825	PF00672	HAMP domain
CH54_RS11825	PF17154	CH54_RS11825
CH54_RS11830	PF05420	CH54_RS11830
CH54_RS11830	PF13432	Tetratricopeptide repeat
CH54_RS11830	PF14559	Tetratricopeptide repeat
CH54_RS11835	PF01270	Glycosyl hydrolases family 8
CH54_RS11840	PF03170	Bacterial cellulose synthase subunit
CH54_RS11845	PF00535	Glycosyl transferase family 2
CH54_RS11845	PF03552	Cellulose synthase
CH54_RS11845	PF07238	PilZ domain
CH54_RS11850	PF06564	YhjQ protein
CH54_RS11855	PF10945	CH54_RS11855
CH54_RS11860	PF10995	CH54_RS11860
CH54_RS11865	PF11120	CH54_RS11865
CH54_RS11870	PF11658	CH54_RS11870
CH54_RS11875	PF00005	ABC transporter
CH54_RS11875	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH54_RS11880	PF00005	ABC transporter
CH54_RS11880	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH54_RS11885	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS11885	PF12911	CH54_RS11885
CH54_RS11890	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS11895	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS11900	PF05860	haemagglutination activity domain
CH54_RS11905	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH54_RS11905	PF08479	POTRA domain, ShlB-type
CH54_RS11910	PF05860	haemagglutination activity domain
CH54_RS11920	PF07690	Major Facilitator Superfamily
CH54_RS11925	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS11925	PF05231	CH54_RS11925
CH54_RS11925	PF07730	Histidine kinase
CH54_RS11930	PF00072	Response regulator receiver domain
CH54_RS11930	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS11935	PF00884	Sulfatase
CH54_RS11935	PF08019	CH54_RS11935
CH54_RS11940	PF02566	OsmC-like protein
CH54_RS11945	PF12146	Putative lysophospholipase
CH54_RS11950	PF06210	CH54_RS11950
CH54_RS11955	PF00324	Amino acid permease
CH54_RS11960	PF00221	Aromatic amino acid lyase
CH54_RS11965	PF01175	Urocanase
CH54_RS11970	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS11980	PF13673	Acetyltransferase (GNAT) domain
CH54_RS11990	PF00072	Response regulator receiver domain
CH54_RS11990	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS11990	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS11990	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS11995	PF12833	Helix-turn-helix domain
CH54_RS11995	PF13377	Periplasmic binding protein-like domain
CH54_RS12000	PF02653	CH54_RS12000
CH54_RS12005	PF00005	ABC transporter
CH54_RS12010	PF13407	Periplasmic binding protein domain
CH54_RS12020	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH54_RS12020	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH54_RS12025	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH54_RS12025	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH54_RS12030	PF00857	Isochorismatase family
CH54_RS12035	PF01965	DJ-1/PfpI family
CH54_RS12035	PF12833	Helix-turn-helix domain
CH54_RS12040	PF01757	CH54_RS12040
CH54_RS12045	PF07690	Major Facilitator Superfamily
CH54_RS12050	PF07804	HipA-like C-terminal domain
CH54_RS12055	PF01381	Helix-turn-helix
CH54_RS12060	PF00009	Elongation factor Tu GTP binding domain
CH54_RS12060	PF09106	Elongation factor SelB, winged helix
CH54_RS12060	PF09107	Elongation factor SelB, winged helix
CH54_RS12065	PF03841	L-seryl-tRNA selenium transferase
CH54_RS12065	PF12390	CH54_RS12065
CH54_RS12070	PF04216	Protein involved in formate dehydrogenase formation
CH54_RS12075	PF01292	Prokaryotic cytochrome b561
CH54_RS12080	PF09163	Formate dehydrogenase N, transmembrane
CH54_RS12080	PF13247	4Fe-4S dicluster domain
CH54_RS12085	PF00384	Molybdopterin oxidoreductase
CH54_RS12085	PF01568	Molydopterin dinucleotide binding domain
CH54_RS12090	PF00384	Molybdopterin oxidoreductase
CH54_RS12090	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH54_RS12095	PF02634	FdhD/NarQ family
CH54_RS12100	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
CH54_RS12100	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
CH54_RS12105	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH54_RS12105	PF00672	HAMP domain
CH54_RS12105	PF16591	CH54_RS12105
CH54_RS12110	PF15738	CH54_RS12110
CH54_RS12115	PF10928	Protein of unknown function (DUF2810)
CH54_RS12120	PF00155	Aminotransferase class I and II
CH54_RS12120	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS12125	PF01810	CH54_RS12125
CH54_RS12130	PF05068	Mannitol repressor
CH54_RS12135	PF01232	Mannitol dehydrogenase Rossmann domain
CH54_RS12135	PF08125	Mannitol dehydrogenase C-terminal domain
CH54_RS12140	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH54_RS12140	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH54_RS12140	PF02378	Phosphotransferase system, EIIC
CH54_RS12145	PF11254	CH54_RS12145
CH54_RS12150	PF02092	CH54_RS12150
CH54_RS12150	PF05746	DALR anticodon binding domain
CH54_RS12155	PF02091	Glycyl-tRNA synthetase alpha subunit
CH54_RS12160	PF03352	Methyladenine glycosylase
CH54_RS12165	PF13673	Acetyltransferase (GNAT) domain
CH54_RS12175	PF08964	Beta/Gamma crystallin
CH54_RS12185	PF07690	Major Facilitator Superfamily
CH54_RS12190	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH54_RS12190	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH54_RS12195	PF00128	Alpha amylase, catalytic domain
CH54_RS12200	PF00155	Aminotransferase class I and II
CH54_RS12205	PF02080	TrkA-C domain
CH54_RS12205	PF06826	CH54_RS12205
CH54_RS12210	PF00011	Hsp20/alpha crystallin family
CH54_RS12215	PF00011	Hsp20/alpha crystallin family
CH54_RS12220	PF07119	CH54_RS12220
CH54_RS12225	PF07676	WD40-like Beta Propeller Repeat
CH54_RS12225	PF12566	CH54_RS12225
CH54_RS12230	PF08348	CH54_RS12230
CH54_RS12230	PF13309	CH54_RS12230
CH54_RS12235	PF00291	Pyridoxal-phosphate dependent enzyme
CH54_RS12240	PF02423	Ornithine cyclodeaminase/mu-crystallin family
CH54_RS12245	PF08282	haloacid dehalogenase-like hydrolase
CH54_RS12250	PF00204	DNA gyrase B
CH54_RS12250	PF00986	DNA gyrase B subunit, carboxyl terminus
CH54_RS12250	PF01751	Toprim domain
CH54_RS12250	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS12255	PF02463	RecF/RecN/SMC N terminal domain
CH54_RS12260	PF00712	DNA polymerase III beta subunit, N-terminal domain
CH54_RS12260	PF02767	DNA polymerase III beta subunit, central domain
CH54_RS12260	PF02768	DNA polymerase III beta subunit, C-terminal domain
CH54_RS12265	PF00308	Bacterial dnaA  protein
CH54_RS12265	PF08299	Bacterial dnaA protein helix-turn-helix
CH54_RS12265	PF11638	DnaA N-terminal domain
CH54_RS12270	PF00468	Ribosomal protein L34
CH54_RS12275	PF00825	Ribonuclease P
CH54_RS12280	PF02096	60Kd inner membrane protein
CH54_RS12280	PF14849	YidC periplasmic domain
CH54_RS12285	PF01926	50S ribosome-binding GTPase
CH54_RS12285	PF10396	GTP-binding protein TrmE N-terminus
CH54_RS12285	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
CH54_RS12290	PF07055	Enoyl reductase FAD binding domain
CH54_RS12290	PF12241	Trans-2-enoyl-CoA reductase catalytic region
CH54_RS12290	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
CH54_RS12295	PF03180	NLPA lipoprotein
CH54_RS12300	PF00005	ABC transporter
CH54_RS12300	PF09383	NIL domain
CH54_RS12305	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS12310	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH54_RS12310	PF00672	HAMP domain
CH54_RS12310	PF02743	Cache domain
CH54_RS12315	PF03358	NADPH-dependent FMN reductase
CH54_RS12320	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS12320	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS12325	PF00072	Response regulator receiver domain
CH54_RS12325	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS12330	PF03928	Domain of unknown function (DUF336)
CH54_RS12335	PF00860	Permease family
CH54_RS12340	PF13419	Haloacid dehalogenase-like hydrolase
CH54_RS12345	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS12350	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS12355	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS12360	PF04519	CH54_RS12360
CH54_RS12365	PF01895	PhoU domain
CH54_RS12370	PF00005	ABC transporter
CH54_RS12375	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS12380	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS12385	PF12849	PBP superfamily domain
CH54_RS12390	PF00916	CH54_RS12390
CH54_RS12390	PF01740	STAS domain
CH54_RS12395	PF01380	SIS domain
CH54_RS12395	PF13522	Glutamine amidotransferase domain
CH54_RS12400	PF00132	Bacterial transferase hexapeptide (six repeats)
CH54_RS12400	PF12804	MobA-like NTP transferase domain
CH54_RS12405	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
CH54_RS12405	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
CH54_RS12410	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH54_RS12410	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CH54_RS12415	PF00231	ATP synthase
CH54_RS12420	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH54_RS12420	PF00306	ATP synthase alpha/beta chain, C terminal domain
CH54_RS12420	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CH54_RS12425	PF00213	ATP synthase delta (OSCP) subunit
CH54_RS12430	PF00430	ATP synthase B/B' CF(0)
CH54_RS12435	PF00137	ATP synthase subunit C
CH54_RS12440	PF00119	ATP synthase A chain
CH54_RS12445	PF03899	CH54_RS12445
CH54_RS12450	PF02527	rRNA small subunit methyltransferase G
CH54_RS12455	PF01134	Glucose inhibited division protein A
CH54_RS12455	PF13932	GidA associated domain 3
CH54_RS12460	PF00258	Flavodoxin
CH54_RS12465	PF01037	AsnC family
CH54_RS12465	PF13404	AsnC-type helix-turn-helix domain
CH54_RS12470	PF03590	Aspartate-ammonia ligase
CH54_RS12475	PF07077	CH54_RS12475
CH54_RS12480	PF05762	VWA domain containing CoxE-like protein
CH54_RS12485	PF07728	AAA domain (dynein-related subfamily)
CH54_RS12485	PF12592	Protein of unknown function (DUF3763)
CH54_RS12490	PF02705	CH54_RS12490
CH54_RS12495	PF05025	RbsD / FucU transport protein family
CH54_RS12500	PF00005	ABC transporter
CH54_RS12505	PF02653	CH54_RS12505
CH54_RS12510	PF13407	Periplasmic binding protein domain
CH54_RS12515	PF00294	pfkB family carbohydrate kinase
CH54_RS12520	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS12520	PF13377	Periplasmic binding protein-like domain
CH54_RS12525	PF07690	Major Facilitator Superfamily
CH54_RS12530	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS12530	PF07729	FCD domain
CH54_RS12555	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
CH54_RS12560	PF12804	MobA-like NTP transferase domain
CH54_RS12565	PF06288	Protein of unknown function (DUF1040)
CH54_RS12570	PF01636	Phosphotransferase enzyme family
CH54_RS12575	PF01323	DSBA-like thioredoxin domain
CH54_RS12580	PF00476	DNA polymerase family A
CH54_RS12580	PF01367	5'-3' exonuclease, C-terminal SAM fold
CH54_RS12580	PF01612	3'-5' exonuclease
CH54_RS12580	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
CH54_RS12585	PF01926	50S ribosome-binding GTPase
CH54_RS12590	PF04220	CH54_RS12590
CH54_RS12595	PF04055	Radical SAM superfamily
CH54_RS12595	PF06969	HemN C-terminal domain
CH54_RS12600	PF00072	Response regulator receiver domain
CH54_RS12600	PF00158	Sigma-54 interaction domain
CH54_RS12600	PF02954	Bacterial regulatory protein, Fis family
CH54_RS12605	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS12605	PF00989	PAS fold
CH54_RS12605	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS12610	PF00120	Glutamine synthetase, catalytic domain
CH54_RS12610	PF03951	Glutamine synthetase, beta-Grasp domain
CH54_RS12615	PF00009	Elongation factor Tu GTP binding domain
CH54_RS12615	PF00679	Elongation factor G C-terminus
CH54_RS12615	PF03144	Elongation factor Tu domain 2
CH54_RS12620	PF13419	Haloacid dehalogenase-like hydrolase
CH54_RS12625	PF03631	CH54_RS12625
CH54_RS12630	PF02580	D-Tyr-tRNA(Tyr) deacylase
CH54_RS12635	PF00583	Acetyltransferase (GNAT) family
CH54_RS12635	PF09500	Putative thioesterase (yiiD_Cterm)
CH54_RS12640	PF13693	Winged helix-turn-helix DNA-binding
CH54_RS12645	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS12645	PF08448	PAS fold
CH54_RS12650	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS12650	PF08448	PAS fold
CH54_RS12660	PF00860	Permease family
CH54_RS12665	PF03616	CH54_RS12665
CH54_RS12670	PF00270	DEAD/DEAH box helicase
CH54_RS12670	PF00271	Helicase conserved C-terminal domain
CH54_RS12670	PF17191	CH54_RS12670
CH54_RS12675	PF00588	SpoU rRNA Methylase family
CH54_RS12675	PF12105	SpoU, rRNA methylase, C-terminal
CH54_RS12680	PF02824	TGS domain
CH54_RS12680	PF04607	Region found in RelA / SpoT proteins
CH54_RS12680	PF13291	ACT domain
CH54_RS12680	PF13328	HD domain
CH54_RS12685	PF01192	RNA polymerase Rpb6
CH54_RS12690	PF00625	Guanylate kinase
CH54_RS12695	PF01653	NAD-dependent DNA ligase adenylation domain
CH54_RS12695	PF03120	NAD-dependent DNA ligase OB-fold domain
CH54_RS12695	PF14520	Helix-hairpin-helix domain
CH54_RS12700	PF03458	CH54_RS12700
CH54_RS12710	PF00378	Enoyl-CoA hydratase/isomerase family
CH54_RS12715	PF00563	EAL domain
CH54_RS12715	PF00990	GGDEF domain
CH54_RS12715	PF13426	PAS domain
CH54_RS12720	PF14110	CH54_RS12720
CH54_RS12725	PF00753	Metallo-beta-lactamase superfamily
CH54_RS12740	PF03755	CH54_RS12740
CH54_RS12740	PF08340	CH54_RS12740
CH54_RS12745	PF01138	3' exoribonuclease family, domain 1
CH54_RS12745	PF03725	3' exoribonuclease family, domain 2
CH54_RS12755	PF04606	CH54_RS12755
CH54_RS12760	PF05954	Phage late control gene D protein (GPD)
CH54_RS12765	PF06995	CH54_RS12765
CH54_RS12770	PF10145	CH54_RS12770
CH54_RS12775	PF06528	CH54_RS12775
CH54_RS12780	PF10109	CH54_RS12780
CH54_RS12785	PF04985	CH54_RS12785
CH54_RS12790	PF04984	Phage tail sheath protein
CH54_RS12800	PF12571	CH54_RS12800
CH54_RS12805	PF09684	CH54_RS12805
CH54_RS12810	PF04865	CH54_RS12810
CH54_RS12815	PF04965	Gene 25-like lysozyme
CH54_RS12820	PF04717	Phage-related baseplate assembly protein
CH54_RS12825	PF05069	CH54_RS12825
CH54_RS12830	PF06891	CH54_RS12830
CH54_RS12840	PF13539	D-alanyl-D-alanine carboxypeptidase
CH54_RS12855	PF05489	Phage Tail Protein X
CH54_RS12860	PF05926	CH54_RS12860
CH54_RS12865	PF05944	CH54_RS12865
CH54_RS12870	PF05125	CH54_RS12870
CH54_RS12875	PF05929	CH54_RS12875
CH54_RS12880	PF03237	Terminase-like family
CH54_RS12880	PF06056	Putative ATPase subunit of terminase (gpP-like)
CH54_RS12885	PF03237	Terminase-like family
CH54_RS12890	PF04860	Phage portal protein
CH54_RS12915	PF05840	CH54_RS12915
CH54_RS12930	PF02086	D12 class N6 adenine-specific DNA methyltransferase
CH54_RS12935	PF00929	Exonuclease
CH54_RS12940	PF12961	Domain of Unknown Function with PDB structure (DUF3850)
CH54_RS12965	PF10743	Regulatory phage protein cox
CH54_RS12975	PF00589	Phage integrase family
CH54_RS12980	PF00156	Phosphoribosyl transferase domain
CH54_RS12985	PF00440	Bacterial regulatory proteins, tetR family
CH54_RS12990	PF00692	dUTPase
CH54_RS12995	PF02441	Flavoprotein
CH54_RS12995	PF04127	DNA / pantothenate metabolism flavoprotein
CH54_RS13000	PF04002	RadC-like JAB domain
CH54_RS13005	PF00830	Ribosomal L28 family
CH54_RS13010	PF00471	Ribosomal protein L33
CH54_RS13015	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
CH54_RS13015	PF06827	Zinc finger found in FPG and IleRS
CH54_RS13015	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
CH54_RS13020	PF01467	Cytidylyltransferase
CH54_RS13025	PF00535	Glycosyl transferase family 2
CH54_RS13030	PF00534	Glycosyl transferases group 1
CH54_RS13030	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
CH54_RS13035	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH54_RS13040	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
CH54_RS13045	PF01370	NAD dependent epimerase/dehydratase family
CH54_RS13050	PF00155	Aminotransferase class I and II
CH54_RS13055	PF00107	Zinc-binding dehydrogenase
CH54_RS13055	PF08240	Alcohol dehydrogenase GroES-like domain
CH54_RS13065	PF04748	Divergent polysaccharide deacetylase
CH54_RS13070	PF01551	Peptidase family M23
CH54_RS13075	PF01676	Metalloenzyme superfamily
CH54_RS13075	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
CH54_RS13080	PF00581	Rhodanese-like domain
CH54_RS13085	PF00462	Glutaredoxin
CH54_RS13090	PF02556	Preprotein translocase subunit SecB
CH54_RS13095	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
CH54_RS13095	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
CH54_RS13100	PF00132	Bacterial transferase hexapeptide (six repeats)
CH54_RS13100	PF06426	Serine acetyltransferase, N-terminal
CH54_RS13105	PF00588	SpoU rRNA Methylase family
CH54_RS13110	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
CH54_RS13110	PF02805	Metal binding domain of Ada
CH54_RS13110	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
CH54_RS13110	PF12833	Helix-turn-helix domain
CH54_RS13115	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS13115	PF00672	HAMP domain
CH54_RS13115	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS13115	PF16527	CH54_RS13115
CH54_RS13120	PF00072	Response regulator receiver domain
CH54_RS13120	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS13125	PF07813	LTXXQ motif family protein
CH54_RS13130	PF01545	Cation efflux family
CH54_RS13130	PF16916	CH54_RS13130
CH54_RS13135	PF00365	Phosphofructokinase
CH54_RS13140	PF13531	Bacterial extracellular solute-binding protein
CH54_RS13145	PF15644	Papain fold toxin 1
CH54_RS13150	PF00121	Triosephosphate isomerase
CH54_RS13155	PF07305	CH54_RS13155
CH54_RS13160	PF05656	CH54_RS13160
CH54_RS13165	PF00175	Oxidoreductase NAD-binding domain
CH54_RS13165	PF00970	Oxidoreductase FAD-binding domain
CH54_RS13170	PF07690	Major Facilitator Superfamily
CH54_RS13175	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
CH54_RS13180	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CH54_RS13180	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CH54_RS13185	PF00230	Major intrinsic protein
CH54_RS13190	PF06005	Protein of unknown function (DUF904)
CH54_RS13195	PF03737	Demethylmenaquinone methyltransferase
CH54_RS13200	PF01040	UbiA prenyltransferase family
CH54_RS13205	PF00004	ATPase family associated with various cellular activities (AAA)
CH54_RS13205	PF07724	AAA domain (Cdc48 subfamily)
CH54_RS13205	PF10431	C-terminal, D2-small domain, of ClpB protein
CH54_RS13210	PF00227	Proteasome subunit
CH54_RS13215	PF05036	Sporulation related domain
CH54_RS13220	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS13220	PF13377	Periplasmic binding protein-like domain
CH54_RS13225	PF00270	DEAD/DEAH box helicase
CH54_RS13225	PF00271	Helicase conserved C-terminal domain
CH54_RS13230	PF01197	Ribosomal protein L31
CH54_RS13235	PF01340	Met Apo-repressor, MetJ
CH54_RS13240	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH54_RS13245	PF00696	Amino acid kinase family
CH54_RS13245	PF00742	Homoserine dehydrogenase
CH54_RS13245	PF03447	Homoserine dehydrogenase, NAD binding domain
CH54_RS13250	PF02219	Methylenetetrahydrofolate reductase
CH54_RS13255	PF00311	Phosphoenolpyruvate carboxylase
CH54_RS13260	PF01546	Peptidase family M20/M25/M40
CH54_RS13260	PF07687	Peptidase dimerisation domain
CH54_RS13265	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CH54_RS13265	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CH54_RS13270	PF00696	Amino acid kinase family
CH54_RS13275	PF00206	Lyase
CH54_RS13275	PF14698	Argininosuccinate lyase C-terminal
CH54_RS13280	PF00593	TonB dependent receptor
CH54_RS13280	PF07715	TonB-dependent Receptor Plug Domain
CH54_RS13285	PF06438	Heme-binding protein A (HasA)
CH54_RS13290	PF06438	Heme-binding protein A (HasA)
CH54_RS13295	PF06438	Heme-binding protein A (HasA)
CH54_RS13300	PF06438	Heme-binding protein A (HasA)
CH54_RS13305	PF00005	ABC transporter
CH54_RS13305	PF00664	ABC transporter transmembrane region
CH54_RS13310	PF13437	HlyD family secretion protein
CH54_RS13310	PF13533	Biotin-lipoyl like
CH54_RS13315	PF03544	Gram-negative bacterial TonB protein C-terminal
CH54_RS13320	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH54_RS13320	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS13325	PF00462	Glutaredoxin
CH54_RS13325	PF08534	Redoxin
CH54_RS13330	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS13330	PF03466	LysR substrate binding domain
CH54_RS13335	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CH54_RS13335	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS13340	PF00440	Bacterial regulatory proteins, tetR family
CH54_RS13345	PF07226	CH54_RS13345
CH54_RS13350	PF05958	tRNA (Uracil-5-)-methyltransferase
CH54_RS13355	PF00593	TonB dependent receptor
CH54_RS13355	PF07715	TonB-dependent Receptor Plug Domain
CH54_RS13360	PF01177	Asp/Glu/Hydantoin racemase
CH54_RS13400	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS13400	PF03466	LysR substrate binding domain
CH54_RS13405	PF04219	CH54_RS13405
CH54_RS13410	PF01078	Magnesium chelatase, subunit ChlI
CH54_RS13410	PF13335	CH54_RS13410
CH54_RS13410	PF13541	Subunit ChlI of Mg-chelatase
CH54_RS13415	PF00205	Thiamine pyrophosphate enzyme, central domain
CH54_RS13415	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH54_RS13415	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH54_RS13420	PF13710	ACT domain
CH54_RS13425	PF01063	Aminotransferase class IV
CH54_RS13430	PF00920	Dehydratase family
CH54_RS13435	PF00291	Pyridoxal-phosphate dependent enzyme
CH54_RS13435	PF00585	C-terminal regulatory domain of Threonine dehydratase
CH54_RS13440	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS13440	PF03466	LysR substrate binding domain
CH54_RS13445	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
CH54_RS13445	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
CH54_RS13450	PF03515	Colicin-like bacteriocin tRNase domain
CH54_RS13450	PF06958	S-type Pyocin
CH54_RS13455	PF01320	Colicin immunity protein / pyocin immunity protein
CH54_RS13460	PF01320	Colicin immunity protein / pyocin immunity protein
CH54_RS13465	PF01320	Colicin immunity protein / pyocin immunity protein
CH54_RS13470	PF06530	CH54_RS13470
CH54_RS13475	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH54_RS13475	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH54_RS13480	PF00419	Fimbrial protein
CH54_RS13485	PF00577	Outer membrane usher protein
CH54_RS13485	PF13953	PapC C-terminal domain
CH54_RS13485	PF13954	PapC N-terminal domain
CH54_RS13490	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
CH54_RS13490	PF02753	Pili assembly chaperone PapD, C-terminal domain
CH54_RS13495	PF16970	CH54_RS13495
CH54_RS13500	PF13616	PPIC-type PPIASE domain
CH54_RS13505	PF00580	UvrD/REP helicase N-terminal domain
CH54_RS13505	PF13361	UvrD-like helicase C-terminal domain
CH54_RS13510	PF02541	Ppx/GppA phosphatase family
CH54_RS13515	PF00270	DEAD/DEAH box helicase
CH54_RS13515	PF00271	Helicase conserved C-terminal domain
CH54_RS13520	PF00085	Thioredoxin
CH54_RS13525	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH54_RS13525	PF07497	Rho termination factor, RNA-binding domain
CH54_RS13525	PF07498	Rho termination factor, N-terminal domain
CH54_RS13535	PF00953	Glycosyl transferase family 4
CH54_RS13540	PF02706	Chain length determinant protein
CH54_RS13545	PF02350	UDP-N-acetylglucosamine 2-epimerase
CH54_RS13550	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
CH54_RS13550	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
CH54_RS13550	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
CH54_RS13555	PF16363	CH54_RS13555
CH54_RS13560	PF00483	Nucleotidyl transferase
CH54_RS13565	PF00583	Acetyltransferase (GNAT) family
CH54_RS13570	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CH54_RS13575	PF01943	CH54_RS13575
CH54_RS13580	PF07429	CH54_RS13580
CH54_RS13585	PF06899	CH54_RS13585
CH54_RS13590	PF03808	CH54_RS13590
CH54_RS13595	PF00324	Amino acid permease
CH54_RS13620	PF07219	CH54_RS13620
CH54_RS13625	PF04375	CH54_RS13625
CH54_RS13630	PF02602	Uroporphyrinogen-III synthase HemD
CH54_RS13635	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
CH54_RS13635	PF03900	Porphobilinogen deaminase, C-terminal domain
CH54_RS13640	PF01295	CH54_RS13640
CH54_RS13640	PF12633	CH54_RS13640
CH54_RS13645	PF01491	Frataxin-like domain
CH54_RS13650	PF13627	CH54_RS13650
CH54_RS13655	PF01678	Diaminopimelate epimerase
CH54_RS13660	PF04340	Protein of unknown function, DUF484
CH54_RS13665	PF00589	Phage integrase family
CH54_RS13665	PF02899	Phage integrase, N-terminal SAM-like domain
CH54_RS13670	PF13419	Haloacid dehalogenase-like hydrolase
CH54_RS13675	PF00580	UvrD/REP helicase N-terminal domain
CH54_RS13675	PF13361	UvrD-like helicase C-terminal domain
CH54_RS13680	PF00440	Bacterial regulatory proteins, tetR family
CH54_RS13685	PF06792	Uncharacterised protein family (UPF0261)
CH54_RS13690	PF09370	TIM-barrel signal transduction protein
CH54_RS13695	PF05523	WxcM-like, C-terminal
CH54_RS13700	PF01544	CorA-like Mg2+ transporter protein
CH54_RS13705	PF00892	EamA-like transporter family
CH54_RS13710	PF03061	Thioesterase superfamily
CH54_RS13715	PF02253	Phospholipase A1
CH54_RS13720	PF00270	DEAD/DEAH box helicase
CH54_RS13720	PF00271	Helicase conserved C-terminal domain
CH54_RS13720	PF00570	HRDC domain
CH54_RS13720	PF09382	RQC domain
CH54_RS13720	PF16124	CH54_RS13720
CH54_RS13725	PF01810	CH54_RS13725
CH54_RS13730	PF01810	CH54_RS13730
CH54_RS13735	PF12146	Putative lysophospholipase
CH54_RS13740	PF08282	haloacid dehalogenase-like hydrolase
CH54_RS13745	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH54_RS13750	PF07690	Major Facilitator Superfamily
CH54_RS13755	PF01266	FAD dependent oxidoreductase
CH54_RS13755	PF04324	BFD-like [2Fe-2S] binding domain
CH54_RS13760	PF00890	FAD binding domain
CH54_RS13765	PF02754	CH54_RS13765
CH54_RS13765	PF13183	4Fe-4S dicluster domain
CH54_RS13770	PF08786	Domain of unknown function (DUF1795)
CH54_RS13775	PF02592	CH54_RS13775
CH54_RS13780	PF01206	Sulfurtransferase TusA
CH54_RS13785	PF00122	E1-E2 ATPase
CH54_RS13785	PF00403	Heavy-metal-associated domain
CH54_RS13785	PF00702	haloacid dehalogenase-like hydrolase
CH54_RS13790	PF07947	CH54_RS13790
CH54_RS13795	PF08850	CH54_RS13795
CH54_RS13800	PF10694	Protein of unknown function (DUF2500)
CH54_RS13805	PF06611	CH54_RS13805
CH54_RS13810	PF03602	Conserved hypothetical protein 95
CH54_RS13815	PF00448	SRP54-type protein, GTPase domain
CH54_RS13815	PF02881	SRP54-type protein, helical bundle domain
CH54_RS13820	PF00005	ABC transporter
CH54_RS13825	PF02687	CH54_RS13825
CH54_RS13830	PF00140	Sigma-70 factor, region 1
CH54_RS13830	PF04542	Sigma-70 region 2
CH54_RS13830	PF04545	Sigma-70, region 4
CH54_RS13845	PF12568	Acetyltransferase (GNAT) domain
CH54_RS13850	PF13458	Periplasmic binding protein
CH54_RS13855	PF02653	CH54_RS13855
CH54_RS13860	PF02653	CH54_RS13860
CH54_RS13860	PF11862	CH54_RS13860
CH54_RS13865	PF00005	ABC transporter
CH54_RS13865	PF12399	Branched-chain amino acid ATP-binding cassette transporter
CH54_RS13870	PF00005	ABC transporter
CH54_RS13895	PF16967	CH54_RS13895
CH54_RS13900	PF04449	CS1 type fimbrial major subunit
CH54_RS13905	PF13416	Bacterial extracellular solute-binding protein
CH54_RS13910	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS13915	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS13920	PF00005	ABC transporter
CH54_RS13925	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH54_RS13930	PF03547	CH54_RS13930
CH54_RS13935	PF00892	EamA-like transporter family
CH54_RS13940	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS13940	PF03466	LysR substrate binding domain
CH54_RS13945	PF01717	Cobalamin-independent synthase, Catalytic domain
CH54_RS13945	PF08267	Cobalamin-independent synthase, N-terminal domain
CH54_RS13950	PF01738	Dienelactone hydrolase family
CH54_RS13955	PF01048	Phosphorylase superfamily
CH54_RS13960	PF13350	Tyrosine phosphatase family
CH54_RS13965	PF02554	CH54_RS13965
CH54_RS13965	PF13722	CH54_RS13965
CH54_RS13970	PF09335	CH54_RS13970
CH54_RS13975	PF02646	CH54_RS13975
CH54_RS13980	PF01209	ubiE/COQ5 methyltransferase family
CH54_RS13985	PF02036	SCP-2 sterol transfer family
CH54_RS13990	PF03109	CH54_RS13990
CH54_RS13995	PF02416	mttA/Hcf106 family
CH54_RS14005	PF00902	Sec-independent protein translocase protein (TatC)
CH54_RS14010	PF01026	TatD related DNase
CH54_RS14015	PF00490	Delta-aminolevulinic acid dehydratase
CH54_RS14020	PF02357	Transcription termination factor nusG
CH54_RS14025	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
CH54_RS14030	PF00175	Oxidoreductase NAD-binding domain
CH54_RS14030	PF00970	Oxidoreductase FAD-binding domain
CH54_RS14035	PF00108	Thiolase, N-terminal domain
CH54_RS14035	PF02803	Thiolase, C-terminal domain
CH54_RS14040	PF00378	Enoyl-CoA hydratase/isomerase family
CH54_RS14040	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
CH54_RS14040	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
CH54_RS14045	PF00557	Metallopeptidase family M24
CH54_RS14050	PF01205	Uncharacterized protein family UPF0029
CH54_RS14050	PF09186	Domain of unknown function (DUF1949)
CH54_RS14055	PF02386	Cation transport protein
CH54_RS14060	PF12724	Flavodoxin domain
CH54_RS14085	PF01565	FAD binding domain
CH54_RS14085	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
CH54_RS14090	PF02237	Biotin protein ligase C terminal domain
CH54_RS14090	PF03099	Biotin/lipoate A/B protein ligase family
CH54_RS14090	PF08279	HTH domain
CH54_RS14095	PF00485	Phosphoribulokinase / Uridine kinase family
CH54_RS14100	PF13673	Acetyltransferase (GNAT) domain
CH54_RS14130	PF00009	Elongation factor Tu GTP binding domain
CH54_RS14130	PF03143	Elongation factor Tu C-terminal domain
CH54_RS14130	PF03144	Elongation factor Tu domain 2
CH54_RS14135	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
CH54_RS14140	PF00467	KOW motif
CH54_RS14140	PF02357	Transcription termination factor nusG
CH54_RS14145	PF00298	Ribosomal protein L11, RNA binding domain
CH54_RS14145	PF03946	Ribosomal protein L11, N-terminal domain
CH54_RS14150	PF00687	Ribosomal protein L1p/L10e family
CH54_RS14155	PF00466	Ribosomal protein L10
CH54_RS14160	PF00542	Ribosomal protein L7/L12 C-terminal domain
CH54_RS14160	PF16320	CH54_RS14160
CH54_RS14165	PF00562	RNA polymerase Rpb2, domain 6
CH54_RS14165	PF04560	RNA polymerase Rpb2, domain 7
CH54_RS14165	PF04561	RNA polymerase Rpb2, domain 2
CH54_RS14165	PF04563	RNA polymerase beta subunit
CH54_RS14165	PF04565	RNA polymerase Rpb2, domain 3
CH54_RS14165	PF10385	RNA polymerase beta subunit external 1 domain
CH54_RS14170	PF00623	RNA polymerase Rpb1, domain 2
CH54_RS14170	PF04983	RNA polymerase Rpb1, domain 3
CH54_RS14170	PF04997	RNA polymerase Rpb1, domain 1
CH54_RS14170	PF04998	RNA polymerase Rpb1, domain 5
CH54_RS14170	PF05000	RNA polymerase Rpb1, domain 4
CH54_RS14175	PF04055	Radical SAM superfamily
CH54_RS14175	PF06968	Biotin and Thiamin Synthesis associated domain
CH54_RS14180	PF05690	Thiazole biosynthesis protein ThiG
CH54_RS14185	PF02597	ThiS family
CH54_RS14190	PF00899	ThiF family
CH54_RS14195	PF02581	Thiamine monophosphate synthase/TENI
CH54_RS14200	PF01964	ThiC family
CH54_RS14200	PF13667	ThiC-associated domain
CH54_RS14205	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
CH54_RS14210	PF00293	NUDIX domain
CH54_RS14210	PF09297	NADH pyrophosphatase zinc ribbon domain
CH54_RS14215	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CH54_RS14220	PF04493	Endonuclease V
CH54_RS14225	PF04222	Protein of unknown function (DUF416)
CH54_RS14230	PF00216	Bacterial DNA-binding protein
CH54_RS14235	PF07356	CH54_RS14235
CH54_RS14240	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
CH54_RS14240	PF02843	Phosphoribosylglycinamide synthetase, C domain
CH54_RS14240	PF02844	Phosphoribosylglycinamide synthetase, N domain
CH54_RS14245	PF01808	AICARFT/IMPCHase bienzyme
CH54_RS14245	PF02142	MGS-like domain
CH54_RS14280	PF04204	Homoserine O-succinyltransferase
CH54_RS14285	PF01274	Malate synthase
CH54_RS14290	PF00463	Isocitrate lyase family
CH54_RS14295	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
CH54_RS14300	PF01614	Bacterial transcriptional regulator
CH54_RS14300	PF09339	IclR helix-turn-helix domain
CH54_RS14305	PF00809	Pterin binding enzyme
CH54_RS14305	PF02310	B12 binding domain
CH54_RS14305	PF02574	Homocysteine S-methyltransferase
CH54_RS14305	PF02607	B12 binding domain
CH54_RS14305	PF02965	Vitamin B12 dependent methionine synthase, activation domain
CH54_RS14310	PF05860	haemagglutination activity domain
CH54_RS14310	PF13332	CH54_RS14310
CH54_RS14315	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
CH54_RS14315	PF08479	POTRA domain, ShlB-type
CH54_RS14320	PF01758	Sodium Bile acid symporter family
CH54_RS14325	PF00696	Amino acid kinase family
CH54_RS14330	PF00342	Phosphoglucose isomerase
CH54_RS14335	PF06146	CH54_RS14335
CH54_RS14340	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS14345	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS14345	PF14785	Maltose transport system permease protein MalF P2 domain
CH54_RS14350	PF13416	Bacterial extracellular solute-binding protein
CH54_RS14355	PF00005	ABC transporter
CH54_RS14355	PF08402	TOBE domain
CH54_RS14360	PF02264	LamB porin
CH54_RS14365	PF07148	CH54_RS14365
CH54_RS14375	PF04345	Chorismate lyase
CH54_RS14380	PF01040	UbiA prenyltransferase family
CH54_RS14385	PF01553	Acyltransferase
CH54_RS14390	PF01219	Prokaryotic diacylglycerol kinase
CH54_RS14395	PF00717	Peptidase S24-like
CH54_RS14395	PF01726	LexA DNA binding domain
CH54_RS14400	PF05532	CsbD-like
CH54_RS14405	PF01475	Ferric uptake regulator family
CH54_RS14410	PF01207	Dihydrouridine synthase (Dus)
CH54_RS14415	PF09583	CH54_RS14415
CH54_RS14425	PF00107	Zinc-binding dehydrogenase
CH54_RS14425	PF08240	Alcohol dehydrogenase GroES-like domain
CH54_RS14430	PF00772	DnaB-like helicase N terminal domain
CH54_RS14430	PF03796	DnaB-like helicase C terminal domain
CH54_RS14435	PF00842	Alanine racemase, C-terminal domain
CH54_RS14435	PF01168	Alanine racemase, N-terminal domain
CH54_RS14440	PF00155	Aminotransferase class I and II
CH54_RS14445	PF04237	YjbR
CH54_RS14450	PF00005	ABC transporter
CH54_RS14455	PF00436	Single-strand binding protein family
CH54_RS14465	PF01381	Helix-turn-helix
CH54_RS14470	PF02798	Glutathione S-transferase, N-terminal domain
CH54_RS14470	PF14497	Glutathione S-transferase, C-terminal domain
CH54_RS14475	PF00860	Permease family
CH54_RS14480	PF00999	Sodium/hydrogen exchanger family
CH54_RS14485	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS14485	PF03466	LysR substrate binding domain
CH54_RS14490	PF03788	CH54_RS14490
CH54_RS14495	PF04172	CH54_RS14495
CH54_RS14500	PF10142	PhoPQ-activated pathogenicity-related protein
CH54_RS14505	PF03279	CH54_RS14505
CH54_RS14510	PF00939	Sodium:sulfate symporter transmembrane region
CH54_RS14520	PF00313	'Cold-shock' DNA-binding domain
CH54_RS14525	PF00313	'Cold-shock' DNA-binding domain
CH54_RS14530	PF05433	CH54_RS14530
CH54_RS14535	PF00990	GGDEF domain
CH54_RS14535	PF02743	Cache domain
CH54_RS14540	PF02954	Bacterial regulatory protein, Fis family
CH54_RS14545	PF01207	Dihydrouridine synthase (Dus)
CH54_RS14550	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
CH54_RS14555	PF00474	Sodium:solute symporter family
CH54_RS14560	PF06196	CH54_RS14560
CH54_RS14565	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
CH54_RS14565	PF02785	Biotin carboxylase C-terminal domain
CH54_RS14565	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CH54_RS14570	PF00364	Biotin-requiring enzyme
CH54_RS14575	PF01220	Dehydroquinase class II
CH54_RS14580	PF01794	CH54_RS14580
CH54_RS14585	PF00174	Oxidoreductase molybdopterin binding domain
CH54_RS14590	PF00107	Zinc-binding dehydrogenase
CH54_RS14590	PF08240	Alcohol dehydrogenase GroES-like domain
CH54_RS14595	PF00563	EAL domain
CH54_RS14595	PF00990	GGDEF domain
CH54_RS14595	PF17157	CH54_RS14595
CH54_RS14600	PF06723	MreB/Mbl protein
CH54_RS14605	PF04085	rod shape-determining protein MreC
CH54_RS14610	PF04093	CH54_RS14610
CH54_RS14615	PF02545	Maf-like protein
CH54_RS14620	PF00575	S1 RNA binding domain
CH54_RS14620	PF10150	Ribonuclease E/G family
CH54_RS14625	PF13116	CH54_RS14625
CH54_RS14625	PF13502	CH54_RS14625
CH54_RS14630	PF00795	Carbon-nitrogen hydrolase
CH54_RS14635	PF01523	Putative modulator of DNA gyrase
CH54_RS14640	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS14640	PF03466	LysR substrate binding domain
CH54_RS14645	PF07869	CH54_RS14645
CH54_RS14650	PF13437	HlyD family secretion protein
CH54_RS14650	PF13533	Biotin-lipoyl like
CH54_RS14655	PF04632	CH54_RS14655
CH54_RS14660	PF00171	Aldehyde dehydrogenase family
CH54_RS14665	PF00545	ribonuclease
CH54_RS14670	PF01337	Barstar (barnase inhibitor)
CH54_RS14675	PF04751	Protein of unknown function (DUF615)
CH54_RS14680	PF01523	Putative modulator of DNA gyrase
CH54_RS14685	PF07361	Cytochrome b562
CH54_RS14690	PF01272	Transcription elongation factor, GreA/GreB, C-term
CH54_RS14690	PF14760	Rnk N-terminus
CH54_RS14700	PF14272	CH54_RS14700
CH54_RS14705	PF14189	CH54_RS14705
CH54_RS14710	PF14188	CH54_RS14710
CH54_RS14715	PF14187	CH54_RS14715
CH54_RS14720	PF01979	Amidohydrolase family
CH54_RS14725	PF03841	L-seryl-tRNA selenium transferase
CH54_RS14730	PF07071	Protein of unknown function (DUF1341)
CH54_RS14735	PF10282	Lactonase, 7-bladed beta-propeller
CH54_RS14740	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH54_RS14740	PF00874	PRD domain
CH54_RS14740	PF05043	Mga helix-turn-helix domain
CH54_RS14740	PF08279	HTH domain
CH54_RS14745	PF00122	E1-E2 ATPase
CH54_RS14745	PF00690	Cation transporter/ATPase, N-terminus
CH54_RS14745	PF00702	haloacid dehalogenase-like hydrolase
CH54_RS14750	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS14750	PF13377	Periplasmic binding protein-like domain
CH54_RS14755	PF00367	phosphotransferase system, EIIB
CH54_RS14755	PF02378	Phosphotransferase system, EIIC
CH54_RS14760	PF00128	Alpha amylase, catalytic domain
CH54_RS14760	PF11941	Domain of unknown function (DUF3459)
CH54_RS14765	PF01042	Endoribonuclease L-PSP
CH54_RS14770	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
CH54_RS14770	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
CH54_RS14775	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
CH54_RS14775	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
CH54_RS14780	PF00381	PTS HPr component phosphorylation site
CH54_RS14785	PF03668	CH54_RS14785
CH54_RS14790	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH54_RS14795	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
CH54_RS14800	PF00309	CH54_RS14800
CH54_RS14800	PF04552	Sigma-54, DNA binding domain
CH54_RS14800	PF04963	Sigma-54 factor, core binding domain
CH54_RS14805	PF00005	ABC transporter
CH54_RS14805	PF12399	Branched-chain amino acid ATP-binding cassette transporter
CH54_RS14810	PF03968	OstA-like protein
CH54_RS14815	PF06835	Lipopolysaccharide-assembly, LptC-related
CH54_RS14820	PF08282	haloacid dehalogenase-like hydrolase
CH54_RS14825	PF00571	CBS domain
CH54_RS14825	PF01380	SIS domain
CH54_RS14830	PF01699	Sodium/calcium exchanger protein
CH54_RS14835	PF00005	ABC transporter
CH54_RS14840	PF02405	CH54_RS14840
CH54_RS14845	PF02470	CH54_RS14845
CH54_RS14850	PF05494	Toluene tolerance, Ttg2
CH54_RS14855	PF13466	STAS domain
CH54_RS14860	PF01722	BolA-like protein
CH54_RS14865	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CH54_RS14870	PF13180	PDZ domain
CH54_RS14870	PF13365	Trypsin-like peptidase domain
CH54_RS14875	PF00595	PDZ domain (Also known as DHR or GLGF)
CH54_RS14875	PF13180	PDZ domain
CH54_RS14875	PF13365	Trypsin-like peptidase domain
CH54_RS14880	PF06295	CH54_RS14880
CH54_RS14885	PF03969	AFG1-like ATPase
CH54_RS14890	PF00572	Ribosomal protein L13
CH54_RS14895	PF00380	Ribosomal protein S9/S16
CH54_RS14900	PF00043	Glutathione S-transferase, C-terminal domain
CH54_RS14900	PF02798	Glutathione S-transferase, N-terminal domain
CH54_RS14905	PF04386	Stringent starvation protein B
CH54_RS14915	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS14915	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CH54_RS14920	PF00310	Glutamine amidotransferases class-II
CH54_RS14920	PF01493	GXGXG motif
CH54_RS14920	PF01645	Conserved region in glutamate synthase
CH54_RS14920	PF04898	Glutamate synthase central domain
CH54_RS14925	PF04055	Radical SAM superfamily
CH54_RS14925	PF16199	CH54_RS14925
CH54_RS14930	PF00072	Response regulator receiver domain
CH54_RS14930	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS14930	PF00989	PAS fold
CH54_RS14930	PF01627	Hpt domain
CH54_RS14930	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS14940	PF00912	Transglycosylase
CH54_RS14945	PF04972	BON domain
CH54_RS14950	PF13580	SIS domain
CH54_RS14955	PF02021	Uncharacterised protein family UPF0102
CH54_RS14960	PF04348	LppC putative lipoprotein
CH54_RS14965	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CH54_RS14970	PF00589	Phage integrase family
CH54_RS14970	PF11646	Protein of unknown function DUF3258
CH54_RS14990	PF11726	CH54_RS14990
CH54_RS14995	PF00239	Resolvase, N terminal domain
CH54_RS15005	PF00145	C-5 cytosine-specific DNA methylase
CH54_RS15015	PF01381	Helix-turn-helix
CH54_RS15020	PF13599	Pentapeptide repeats (9 copies)
CH54_RS15025	PF12698	ABC-2 family transporter protein
CH54_RS15030	PF13437	HlyD family secretion protein
CH54_RS15030	PF13533	Biotin-lipoyl like
CH54_RS15040	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS15040	PF03466	LysR substrate binding domain
CH54_RS15045	PF00248	Aldo/keto reductase family
CH54_RS15050	PF07883	Cupin domain
CH54_RS15055	PF00106	short chain dehydrogenase
CH54_RS15060	PF00107	Zinc-binding dehydrogenase
CH54_RS15060	PF08240	Alcohol dehydrogenase GroES-like domain
CH54_RS15065	PF02678	Pirin
CH54_RS15070	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS15070	PF03466	LysR substrate binding domain
CH54_RS15075	PF13409	Glutathione S-transferase, N-terminal domain
CH54_RS15075	PF13410	Glutathione S-transferase, C-terminal domain
CH54_RS15080	PF07681	CH54_RS15080
CH54_RS15085	PF13997	CH54_RS15085
CH54_RS15090	PF07332	CH54_RS15090
CH54_RS15095	PF05957	CH54_RS15095
CH54_RS15100	PF06476	CH54_RS15100
CH54_RS15105	PF13721	SecD export protein N-terminal TM region
CH54_RS15110	PF09335	CH54_RS15110
CH54_RS15120	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS15120	PF07729	FCD domain
CH54_RS15125	PF07690	Major Facilitator Superfamily
CH54_RS15130	PF02614	Glucuronate isomerase
CH54_RS15135	PF01232	Mannitol dehydrogenase Rossmann domain
CH54_RS15135	PF08125	Mannitol dehydrogenase C-terminal domain
CH54_RS15140	PF04295	CH54_RS15140
CH54_RS15140	PF08666	SAF domain
CH54_RS15145	PF10688	CH54_RS15145
CH54_RS15150	PF00375	Sodium:dicarboxylate symporter family
CH54_RS15155	PF03741	CH54_RS15155
CH54_RS15160	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
CH54_RS15165	PF01863	Protein of unknown function DUF45
CH54_RS15170	PF03797	Autotransporter beta-domain
CH54_RS15175	PF05175	Methyltransferase small domain
CH54_RS15180	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
CH54_RS15180	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS15190	PF03729	CH54_RS15190
CH54_RS15195	PF00282	Pyridoxal-dependent decarboxylase conserved domain
CH54_RS15200	PF13520	Amino acid permease
CH54_RS15205	PF04960	Glutaminase
CH54_RS15210	PF00367	phosphotransferase system, EIIB
CH54_RS15210	PF02378	Phosphotransferase system, EIIC
CH54_RS15215	PF13580	SIS domain
CH54_RS15220	PF01380	SIS domain
CH54_RS15220	PF01418	Helix-turn-helix domain, rpiR family
CH54_RS15225	PF00933	Glycosyl hydrolase family 3 N terminal domain
CH54_RS15235	PF07075	Protein of unknown function (DUF1343)
CH54_RS15245	PF00140	Sigma-70 factor, region 1
CH54_RS15245	PF03979	Sigma-70 factor, region 1
CH54_RS15245	PF04539	Sigma-70 region 3
CH54_RS15245	PF04542	Sigma-70 region 2
CH54_RS15245	PF04545	Sigma-70, region 4
CH54_RS15245	PF04546	Sigma-70, non-essential region
CH54_RS15250	PF01807	CHC2 zinc finger
CH54_RS15250	PF08275	DNA primase catalytic core, N-terminal domain
CH54_RS15250	PF08278	DNA primase DnaG DnaB-binding
CH54_RS15250	PF10410	DnaB-helicase binding domain of primase
CH54_RS15250	PF13155	Toprim-like
CH54_RS15255	PF01165	Ribosomal protein S21
CH54_RS15260	PF00814	Glycoprotease family
CH54_RS15265	PF02660	CH54_RS15265
CH54_RS15270	PF02152	Dihydroneopterin aldolase
CH54_RS15275	PF02673	CH54_RS15275
CH54_RS15280	PF01743	Poly A polymerase head domain
CH54_RS15280	PF01966	HD domain
CH54_RS15280	PF12627	Probable RNA and SrmB- binding site of polymerase A
CH54_RS15285	PF08239	Bacterial SH3 domain
CH54_RS15290	PF01928	CYTH domain
CH54_RS15295	PF03710	Glutamate-ammonia ligase adenylyltransferase
CH54_RS15295	PF08335	GlnD PII-uridylyltransferase
CH54_RS15300	PF00294	pfkB family carbohydrate kinase
CH54_RS15300	PF01467	Cytidylyltransferase
CH54_RS15305	PF13520	Amino acid permease
CH54_RS15310	PF04380	CH54_RS15310
CH54_RS15315	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
CH54_RS15320	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
CH54_RS15325	PF03738	Glutathionylspermidine synthase preATP-grasp
CH54_RS15330	PF06693	CH54_RS15330
CH54_RS15335	PF02321	Outer membrane efflux protein
CH54_RS15340	PF00293	NUDIX domain
CH54_RS15345	PF06853	CH54_RS15345
CH54_RS15350	PF00149	Calcineurin-like phosphoesterase
CH54_RS15355	PF05728	Uncharacterised protein family (UPF0227)
CH54_RS15360	PF00204	DNA gyrase B
CH54_RS15360	PF00986	DNA gyrase B subunit, carboxyl terminus
CH54_RS15360	PF01751	Toprim domain
CH54_RS15360	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS15365	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS15365	PF03466	LysR substrate binding domain
CH54_RS15370	PF03992	Antibiotic biosynthesis monooxygenase
CH54_RS15375	PF02525	Flavodoxin-like fold
CH54_RS15380	PF00521	DNA gyrase/topoisomerase IV, subunit A
CH54_RS15380	PF03989	DNA gyrase C-terminal domain, beta-propeller
CH54_RS15385	PF01553	Acyltransferase
CH54_RS15390	PF07731	Multicopper oxidase
CH54_RS15390	PF07732	Multicopper oxidase
CH54_RS15395	PF04055	Radical SAM superfamily
CH54_RS15395	PF08497	CH54_RS15395
CH54_RS15395	PF11842	CH54_RS15395
CH54_RS15400	PF00248	Aldo/keto reductase family
CH54_RS15405	PF00465	Iron-containing alcohol dehydrogenase
CH54_RS15410	PF06719	CH54_RS15410
CH54_RS15410	PF12833	Helix-turn-helix domain
CH54_RS15415	PF09335	CH54_RS15415
CH54_RS15420	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH54_RS15425	PF01618	CH54_RS15425
CH54_RS15430	PF02472	Biopolymer transport protein ExbD/TolR
CH54_RS15440	PF16964	CH54_RS15440
CH54_RS15445	PF07811	CH54_RS15445
CH54_RS15455	PF00482	Type II secretion system (T2SS), protein F
CH54_RS15460	PF00482	Type II secretion system (T2SS), protein F
CH54_RS15465	PF00437	Type II/IV secretion system protein
CH54_RS15480	PF00263	CH54_RS15480
CH54_RS15480	PF13629	CH54_RS15480
CH54_RS15490	PF01478	Type IV leader peptidase family
CH54_RS15500	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS15505	PF13532	2OG-Fe(II) oxygenase superfamily
CH54_RS15510	PF00873	AcrB/AcrD/AcrF family
CH54_RS15515	PF11604	Copper binding periplasmic protein CusF
CH54_RS15515	PF16576	CH54_RS15515
CH54_RS15520	PF02321	Outer membrane efflux protein
CH54_RS15525	PF11604	Copper binding periplasmic protein CusF
CH54_RS15535	PF00593	TonB dependent receptor
CH54_RS15535	PF07715	TonB-dependent Receptor Plug Domain
CH54_RS15540	PF00756	Putative esterase
CH54_RS15540	PF11806	Domain of unknown function (DUF3327)
CH54_RS15545	PF03621	MbtH-like protein
CH54_RS15550	PF00501	AMP-binding enzyme
CH54_RS15550	PF00550	Phosphopantetheine attachment site
CH54_RS15550	PF00668	Condensation domain
CH54_RS15550	PF00975	Thioesterase domain
CH54_RS15550	PF13193	AMP-binding enzyme C-terminal domain
CH54_RS15555	PF05977	Transmembrane secretion effector
CH54_RS15560	PF01032	FecCD transport family
CH54_RS15565	PF01032	FecCD transport family
CH54_RS15570	PF00005	ABC transporter
CH54_RS15575	PF01497	Periplasmic binding protein
CH54_RS15580	PF00425	chorismate binding enzyme
CH54_RS15585	PF00501	AMP-binding enzyme
CH54_RS15585	PF13193	AMP-binding enzyme C-terminal domain
CH54_RS15590	PF00550	Phosphopantetheine attachment site
CH54_RS15590	PF00857	Isochorismatase family
CH54_RS15595	PF13561	Enoyl-(Acyl carrier protein) reductase
CH54_RS15600	PF07690	Major Facilitator Superfamily
CH54_RS15605	PF01370	NAD dependent epimerase/dehydratase family
CH54_RS15615	PF00771	FHIPEP family
CH54_RS15620	PF01312	FlhB HrpN YscU SpaS Family
CH54_RS15625	PF01311	CH54_RS15625
CH54_RS15630	PF01313	CH54_RS15630
CH54_RS15635	PF00813	CH54_RS15635
CH54_RS15640	PF01052	Surface presentation of antigens (SPOA)
CH54_RS15645	PF01052	Surface presentation of antigens (SPOA)
CH54_RS15650	PF00158	Sigma-54 interaction domain
CH54_RS15650	PF02954	Bacterial regulatory protein, Fis family
CH54_RS15655	PF02049	CH54_RS15655
CH54_RS15660	PF01514	Secretory protein of YscJ/FliF family
CH54_RS15660	PF08345	CH54_RS15660
CH54_RS15665	PF01706	FliG C-terminal domain
CH54_RS15665	PF14841	FliG middle domain
CH54_RS15665	PF14842	FliG N-terminal domain
CH54_RS15670	PF02108	CH54_RS15670
CH54_RS15670	PF09811	CH54_RS15670
CH54_RS15675	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CH54_RS15680	PF02050	Flagellar FliJ protein
CH54_RS15685	PF05130	FlgN protein
CH54_RS15690	PF04316	Anti-sigma-28 factor, FlgM
CH54_RS15695	PF13144	SAF-like
CH54_RS15700	PF00460	Flagella basal body rod protein
CH54_RS15705	PF00460	Flagella basal body rod protein
CH54_RS15705	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH54_RS15710	PF03963	CH54_RS15710
CH54_RS15710	PF13860	FlgD Ig-like domain
CH54_RS15710	PF13861	FlgD Tudor-like domain
CH54_RS15715	PF00460	Flagella basal body rod protein
CH54_RS15715	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH54_RS15715	PF07559	Flagellar basal body protein FlaE
CH54_RS15720	PF00460	Flagella basal body rod protein
CH54_RS15720	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH54_RS15725	PF00460	Flagella basal body rod protein
CH54_RS15725	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH54_RS15730	PF02107	CH54_RS15730
CH54_RS15735	PF02119	CH54_RS15735
CH54_RS15740	PF10135	CH54_RS15740
CH54_RS15745	PF00460	Flagella basal body rod protein
CH54_RS15745	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CH54_RS15750	PF00669	Bacterial flagellin N-terminal helical region
CH54_RS15750	PF00700	Bacterial flagellin C-terminal helical region
CH54_RS15765	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS15770	PF00669	Bacterial flagellin N-terminal helical region
CH54_RS15770	PF00700	Bacterial flagellin C-terminal helical region
CH54_RS15775	PF02465	CH54_RS15775
CH54_RS15775	PF07195	CH54_RS15775
CH54_RS15775	PF07196	Flagellin hook IN motif
CH54_RS15780	PF02561	Flagellar protein FliS
CH54_RS15790	PF02120	Flagellar hook-length control protein FliK
CH54_RS15795	PF03748	CH54_RS15795
CH54_RS15800	PF04539	Sigma-70 region 3
CH54_RS15800	PF04542	Sigma-70 region 2
CH54_RS15800	PF04545	Sigma-70, region 4
CH54_RS15805	PF01618	CH54_RS15805
CH54_RS15810	PF00691	OmpA family
CH54_RS15810	PF13677	CH54_RS15810
CH54_RS15815	PF05433	CH54_RS15815
CH54_RS15820	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
CH54_RS15820	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
CH54_RS15825	PF13247	4Fe-4S dicluster domain
CH54_RS15835	PF00374	Nickel-dependent hydrogenase
CH54_RS15840	PF01750	Hydrogenase maturation protease
CH54_RS15845	PF11939	Protein of unknown function (DUF3457)
CH54_RS15850	PF01155	Hydrogenase expression/synthesis hypA family
CH54_RS15855	PF02492	CobW/HypB/UreG, nucleotide-binding domain
CH54_RS15860	PF01455	HupF/HypC family
CH54_RS15865	PF01924	Hydrogenase formation hypA family
CH54_RS15870	PF00586	AIR synthase related protein, N-terminal domain
CH54_RS15870	PF02769	AIR synthase related protein, C-terminal domain
CH54_RS15875	PF00708	Acylphosphatase
CH54_RS15875	PF01300	Telomere recombination
CH54_RS15875	PF07503	HypF finger
CH54_RS15880	PF11769	CH54_RS15880
CH54_RS15885	PF00563	EAL domain
CH54_RS15885	PF00989	PAS fold
CH54_RS15885	PF00990	GGDEF domain
CH54_RS15885	PF05228	CH54_RS15885
CH54_RS15890	PF13533	Biotin-lipoyl like
CH54_RS15895	PF00873	AcrB/AcrD/AcrF family
CH54_RS15905	PF13018	CH54_RS15905
CH54_RS15910	PF03806	CH54_RS15910
CH54_RS15915	PF01546	Peptidase family M20/M25/M40
CH54_RS15915	PF07687	Peptidase dimerisation domain
CH54_RS15920	PF01895	PhoU domain
CH54_RS15920	PF02690	CH54_RS15920
CH54_RS15925	PF01156	Inosine-uridine preferring nucleoside hydrolase
CH54_RS15935	PF00083	Sugar (and other) transporter
CH54_RS15950	PF01497	Periplasmic binding protein
CH54_RS15955	PF01032	FecCD transport family
CH54_RS15960	PF01032	FecCD transport family
CH54_RS15965	PF00005	ABC transporter
CH54_RS15970	PF00557	Metallopeptidase family M24
CH54_RS15975	PF11903	CH54_RS15975
CH54_RS15980	PF01979	Amidohydrolase family
CH54_RS15985	PF17090	CH54_RS15985
CH54_RS15990	PF13437	HlyD family secretion protein
CH54_RS15990	PF13533	Biotin-lipoyl like
CH54_RS15995	PF04632	CH54_RS15995
CH54_RS16000	PF02321	Outer membrane efflux protein
CH54_RS16005	PF02275	Linear amide C-N hydrolases, choloylglycine hydrolase family
CH54_RS16010	PF05591	CH54_RS16010
CH54_RS16015	PF05943	CH54_RS16015
CH54_RS16020	PF05936	CH54_RS16020
CH54_RS16025	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH54_RS16030	PF00691	OmpA family
CH54_RS16035	PF05638	Protein of unknown function (DUF796)
CH54_RS16040	PF00004	ATPase family associated with various cellular activities (AAA)
CH54_RS16040	PF07724	AAA domain (Cdc48 subfamily)
CH54_RS16040	PF10431	C-terminal, D2-small domain, of ClpB protein
CH54_RS16045	PF05954	Phage late control gene D protein (GPD)
CH54_RS16045	PF10106	CH54_RS16045
CH54_RS16045	PF13296	CH54_RS16045
CH54_RS16060	PF07007	Protein of unknown function (DUF1311)
CH54_RS16105	PF05488	PAAR motif
CH54_RS16115	PF06744	CH54_RS16115
CH54_RS16115	PF06761	CH54_RS16115
CH54_RS16120	PF06812	CH54_RS16120
CH54_RS16120	PF16989	CH54_RS16120
CH54_RS16125	PF05947	CH54_RS16125
CH54_RS16130	PF06996	CH54_RS16130
CH54_RS16135	PF12790	Type VI secretion lipoprotein
CH54_RS16140	PF05954	Phage late control gene D protein (GPD)
CH54_RS16140	PF10106	CH54_RS16140
CH54_RS16140	PF13296	CH54_RS16140
CH54_RS16155	PF05954	Phage late control gene D protein (GPD)
CH54_RS16160	PF11745	CH54_RS16160
CH54_RS16165	PF09994	Uncharacterized alpha/beta hydrolase domain (DUF2235)
CH54_RS16180	PF04965	Gene 25-like lysozyme
CH54_RS16185	PF06812	CH54_RS16185
CH54_RS16185	PF12486	CH54_RS16185
CH54_RS16195	PF00296	Luciferase-like monooxygenase
CH54_RS16200	PF09084	NMT1/THI5 like
CH54_RS16205	PF00005	ABC transporter
CH54_RS16210	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS16215	PF00248	Aldo/keto reductase family
CH54_RS16220	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS16220	PF03466	LysR substrate binding domain
CH54_RS16225	PF12697	Alpha/beta hydrolase family
CH54_RS16235	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS16235	PF13377	Periplasmic binding protein-like domain
CH54_RS16240	PF00150	Cellulase (glycosyl hydrolase family 5)
CH54_RS16245	PF13347	MFS/sugar transport protein
CH54_RS16250	PF13356	Domain of unknown function (DUF4102)
CH54_RS16255	PF01381	Helix-turn-helix
CH54_RS16260	PF05973	CH54_RS16260
CH54_RS16265	PF13708	CH54_RS16265
CH54_RS16270	PF06154	YagB/YeeU/YfjZ family
CH54_RS16275	PF06755	CH54_RS16275
CH54_RS16285	PF04002	RadC-like JAB domain
CH54_RS16290	PF03230	Antirestriction protein
CH54_RS16300	PF06069	CH54_RS16300
CH54_RS16305	PF05591	CH54_RS16305
CH54_RS16310	PF05943	CH54_RS16310
CH54_RS16315	PF05936	CH54_RS16315
CH54_RS16320	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
CH54_RS16325	PF00691	OmpA family
CH54_RS16330	PF05638	Protein of unknown function (DUF796)
CH54_RS16335	PF00004	ATPase family associated with various cellular activities (AAA)
CH54_RS16335	PF07724	AAA domain (Cdc48 subfamily)
CH54_RS16335	PF10431	C-terminal, D2-small domain, of ClpB protein
CH54_RS16345	PF07377	Protein of unknown function (DUF1493)
CH54_RS16350	PF05954	Phage late control gene D protein (GPD)
CH54_RS16350	PF10106	CH54_RS16350
CH54_RS16350	PF13296	CH54_RS16350
CH54_RS16355	PF14113	Domain of unknown function (DUF4285)
CH54_RS16365	PF01764	Lipase (class 3)
CH54_RS16375	PF01764	Lipase (class 3)
CH54_RS16385	PF05488	PAAR motif
CH54_RS16395	PF06744	CH54_RS16395
CH54_RS16395	PF06761	CH54_RS16395
CH54_RS16400	PF06812	CH54_RS16400
CH54_RS16400	PF16989	CH54_RS16400
CH54_RS16405	PF05947	CH54_RS16405
CH54_RS16410	PF06996	CH54_RS16410
CH54_RS16415	PF12790	Type VI secretion lipoprotein
CH54_RS16420	PF04965	Gene 25-like lysozyme
CH54_RS16430	PF06812	CH54_RS16430
CH54_RS16430	PF12486	CH54_RS16430
CH54_RS16445	PF00580	UvrD/REP helicase N-terminal domain
CH54_RS16445	PF13361	UvrD-like helicase C-terminal domain
CH54_RS16450	PF13676	TIR domain
CH54_RS16455	PF05954	Phage late control gene D protein (GPD)
CH54_RS16465	PF13356	Domain of unknown function (DUF4102)
CH54_RS16470	PF13614	AAA domain
CH54_RS16475	PF00772	DnaB-like helicase N terminal domain
CH54_RS16475	PF03796	DnaB-like helicase C terminal domain
CH54_RS16480	PF01316	Arginine repressor, DNA binding domain
CH54_RS16480	PF02195	ParB-like nuclease domain
CH54_RS16485	PF00665	Integrase core domain
CH54_RS16485	PF13276	CH54_RS16485
CH54_RS16490	PF01527	Transposase
CH54_RS16495	PF00589	Phage integrase family
CH54_RS16505	PF01276	Orn/Lys/Arg decarboxylase, major domain
CH54_RS16505	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
CH54_RS16505	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
CH54_RS16510	PF01925	CH54_RS16510
CH54_RS16515	PF01464	Transglycosylase SLT domain
CH54_RS16515	PF11873	Domain of unknown function (DUF3393)
CH54_RS16520	PF04362	Bacterial Fe(2+) trafficking
CH54_RS16525	PF00633	Helix-hairpin-helix motif
CH54_RS16525	PF00730	HhH-GPD superfamily base excision DNA repair protein
CH54_RS16525	PF10576	Iron-sulfur binding domain of endonuclease III
CH54_RS16525	PF14815	NUDIX domain
CH54_RS16530	PF02390	Putative methyltransferase
CH54_RS16535	PF04320	CH54_RS16535
CH54_RS16540	PF04960	Glutaminase
CH54_RS16545	PF11101	CH54_RS16545
CH54_RS16550	PF04055	Radical SAM superfamily
CH54_RS16550	PF06969	HemN C-terminal domain
CH54_RS16555	PF01725	Ham1 family
CH54_RS16560	PF02594	Uncharacterised ACR, YggU family COG1872
CH54_RS16565	PF02325	CH54_RS16565
CH54_RS16570	PF03807	NADP oxidoreductase coenzyme F420-dependent
CH54_RS16570	PF14748	Pyrroline-5-carboxylate reductase dimerisation
CH54_RS16575	PF01168	Alanine racemase, N-terminal domain
CH54_RS16580	PF00437	Type II/IV secretion system protein
CH54_RS16585	PF04371	Porphyromonas-type peptidyl-arginine deiminase
CH54_RS16590	PF00795	Carbon-nitrogen hydrolase
CH54_RS16595	PF03652	Uncharacterised protein family (UPF0081)
CH54_RS16600	PF02622	Uncharacterized ACR, COG1678
CH54_RS16605	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
CH54_RS16605	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
CH54_RS16610	PF04452	RNA methyltransferase
CH54_RS16615	PF04231	Endonuclease I
CH54_RS16620	PF10263	CH54_RS16620
CH54_RS16625	PF01022	Bacterial regulatory protein, arsR family
CH54_RS16630	PF04143	CH54_RS16630
CH54_RS16635	PF04143	CH54_RS16635
CH54_RS16640	PF01609	Transposase DDE domain
CH54_RS16645	PF00438	S-adenosylmethionine synthetase, N-terminal domain
CH54_RS16645	PF02772	S-adenosylmethionine synthetase, central domain
CH54_RS16645	PF02773	S-adenosylmethionine synthetase, C-terminal domain
CH54_RS16655	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
CH54_RS16655	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
CH54_RS16660	PF00355	Rieske [2Fe-2S] domain
CH54_RS16665	PF01435	Peptidase family M48
CH54_RS16670	PF00456	Transketolase, thiamine diphosphate binding domain
CH54_RS16670	PF02779	Transketolase, pyrimidine binding domain
CH54_RS16670	PF02780	Transketolase, C-terminal domain
CH54_RS16675	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CH54_RS16675	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
CH54_RS16680	PF00162	Phosphoglycerate kinase
CH54_RS16685	PF01116	Fructose-bisphosphate aldolase class-II
CH54_RS16695	PF00924	Mechanosensitive ion channel
CH54_RS16695	PF05552	Conserved TM helix
CH54_RS16700	PF01810	CH54_RS16700
CH54_RS16705	PF04402	Protein of unknown function (DUF541)
CH54_RS16710	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS16710	PF03466	LysR substrate binding domain
CH54_RS16715	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
CH54_RS16720	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH54_RS16720	PF01842	ACT domain
CH54_RS16720	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH54_RS16725	PF01812	5-formyltetrahydrofolate cyclo-ligase family
CH54_RS16730	PF05164	Cell division protein ZapA
CH54_RS16735	PF03695	Uncharacterised protein family (UPF0149)
CH54_RS16740	PF00557	Metallopeptidase family M24
CH54_RS16740	PF05195	Aminopeptidase P, N-terminal domain
CH54_RS16745	PF01494	FAD binding domain
CH54_RS16750	PF01494	FAD binding domain
CH54_RS16755	PF01571	Aminomethyltransferase folate-binding domain
CH54_RS16755	PF08669	Glycine cleavage T-protein C-terminal barrel domain
CH54_RS16760	PF01597	Glycine cleavage H-protein
CH54_RS16765	PF02347	Glycine cleavage system P-protein
CH54_RS16770	PF13561	Enoyl-(Acyl carrier protein) reductase
CH54_RS16775	PF13023	HD domain
CH54_RS16780	PF03006	CH54_RS16780
CH54_RS16785	PF01571	Aminomethyltransferase folate-binding domain
CH54_RS16790	PF03937	Flavinator of succinate dehydrogenase
CH54_RS16795	PF07254	CH54_RS16795
CH54_RS16800	PF00072	Response regulator receiver domain
CH54_RS16800	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS16805	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS16805	PF00672	HAMP domain
CH54_RS16805	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS16805	PF14827	Sensory domain of two-component sensor kinase
CH54_RS16810	PF06123	CH54_RS16810
CH54_RS16815	PF00258	Flavodoxin
CH54_RS16820	PF00589	Phage integrase family
CH54_RS16820	PF02899	Phage integrase, N-terminal SAM-like domain
CH54_RS16825	PF10411	Disulfide bond isomerase protein N-terminus
CH54_RS16825	PF13098	Thioredoxin-like domain
CH54_RS16830	PF01368	DHH family
CH54_RS16830	PF02272	DHHA1 domain
CH54_RS16835	PF00472	RF-1 domain
CH54_RS16835	PF03462	PCRF domain
CH54_RS16840	PF00152	tRNA synthetases class II (D, K and N)
CH54_RS16840	PF01336	OB-fold nucleic acid binding domain
CH54_RS16850	PF00239	Resolvase, N terminal domain
CH54_RS16850	PF02796	Helix-turn-helix domain of resolvase
CH54_RS16860	PF01527	Transposase
CH54_RS16865	PF00665	Integrase core domain
CH54_RS16865	PF13276	CH54_RS16865
CH54_RS16870	PF08843	Nucleotidyl transferase of unknown function (DUF1814)
CH54_RS16885	PF05016	Plasmid stabilisation system protein
CH54_RS16890	PF01381	Helix-turn-helix
CH54_RS16910	PF03288	Poxvirus D5 protein-like
CH54_RS16910	PF08273	Zinc-binding domain of primase-helicase
CH54_RS16910	PF08706	CH54_RS16910
CH54_RS16910	PF13362	Toprim domain
CH54_RS16915	PF05973	CH54_RS16915
CH54_RS16920	PF05930	Prophage CP4-57 regulatory protein (AlpA)
CH54_RS16940	PF02661	Fic/DOC family
CH54_RS16945	PF01037	AsnC family
CH54_RS16945	PF13412	Winged helix-turn-helix DNA-binding
CH54_RS16950	PF09391	Protein of unknown function (DUF2000)
CH54_RS16955	PF01055	Glycosyl hydrolases family 31
CH54_RS16955	PF13802	Galactose mutarotase-like
CH54_RS16955	PF17137	CH54_RS16955
CH54_RS16960	PF07690	Major Facilitator Superfamily
CH54_RS16965	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS16965	PF13377	Periplasmic binding protein-like domain
CH54_RS16970	PF00226	DnaJ domain
CH54_RS16970	PF01556	DnaJ C terminal domain
CH54_RS16975	PF13591	MerR HTH family regulatory protein
CH54_RS16980	PF13561	Enoyl-(Acyl carrier protein) reductase
CH54_RS16985	PF01638	HxlR-like helix-turn-helix
CH54_RS16990	PF00484	Carbonic anhydrase
CH54_RS17000	PF11356	Type IV pilus biogenesis
CH54_RS17005	PF00263	CH54_RS17005
CH54_RS17005	PF03958	Bacterial type II/III secretion system short domain
CH54_RS17010	PF00437	Type II/IV secretion system protein
CH54_RS17015	PF00482	Type II secretion system (T2SS), protein F
CH54_RS17020	PF07963	Prokaryotic N-terminal methylation motif
CH54_RS17020	PF08334	Type II secretion system (T2SS), protein G
CH54_RS17025	PF02501	Type II secretion system (T2SS), protein I
CH54_RS17030	PF11612	Type II secretion system (T2SS), protein J
CH54_RS17035	PF03934	Type II secretion system (T2SS), protein K
CH54_RS17040	PF05134	Type II secretion system (T2SS), protein L
CH54_RS17050	PF01478	Type IV leader peptidase family
CH54_RS17050	PF06750	CH54_RS17050
CH54_RS17055	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
CH54_RS17060	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS17075	PF01323	DSBA-like thioredoxin domain
CH54_RS17080	PF00753	Metallo-beta-lactamase superfamily
CH54_RS17085	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS17085	PF03466	LysR substrate binding domain
CH54_RS17090	PF07690	Major Facilitator Superfamily
CH54_RS17095	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS17095	PF03466	LysR substrate binding domain
CH54_RS17100	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
CH54_RS17100	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
CH54_RS17105	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS17105	PF13377	Periplasmic binding protein-like domain
CH54_RS17110	PF00384	Molybdopterin oxidoreductase
CH54_RS17110	PF01568	Molydopterin dinucleotide binding domain
CH54_RS17115	PF00501	AMP-binding enzyme
CH54_RS17115	PF01553	Acyltransferase
CH54_RS17115	PF13193	AMP-binding enzyme C-terminal domain
CH54_RS17120	PF07690	Major Facilitator Superfamily
CH54_RS17125	PF00248	Aldo/keto reductase family
CH54_RS17130	PF03741	CH54_RS17130
CH54_RS17135	PF02976	DNA mismatch repair enzyme MutH
CH54_RS17145	PF00293	NUDIX domain
CH54_RS17150	PF00391	PEP-utilising enzyme, mobile domain
CH54_RS17150	PF01590	GAF domain
CH54_RS17150	PF02896	PEP-utilising enzyme, TIM barrel domain
CH54_RS17150	PF05524	PEP-utilising enzyme, N-terminal
CH54_RS17155	PF01790	CH54_RS17155
CH54_RS17160	PF00303	Thymidylate synthase
CH54_RS17175	PF10713	CH54_RS17175
CH54_RS17180	PF12528	CH54_RS17180
CH54_RS17185	PF04257	Exodeoxyribonuclease V, gamma subunit
CH54_RS17190	PF00675	Insulinase (Peptidase family M16)
CH54_RS17190	PF05193	Peptidase M16 inactive domain
CH54_RS17190	PF16187	CH54_RS17190
CH54_RS17195	PF00580	UvrD/REP helicase N-terminal domain
CH54_RS17195	PF13361	UvrD-like helicase C-terminal domain
CH54_RS17200	PF13538	UvrD-like helicase C-terminal domain
CH54_RS17200	PF13604	AAA domain
CH54_RS17205	PF00583	Acetyltransferase (GNAT) family
CH54_RS17205	PF00696	Amino acid kinase family
CH54_RS17210	PF01520	N-acetylmuramoyl-L-alanine amidase
CH54_RS17210	PF11741	AMIN domain
CH54_RS17230	PF03562	MltA specific insert domain
CH54_RS17230	PF06725	3D domain
CH54_RS17235	PF00899	ThiF family
CH54_RS17240	PF02657	Fe-S metabolism associated domain
CH54_RS17245	PF00266	Aminotransferase class-V
CH54_RS17250	PF06004	Bacterial protein of unknown function (DUF903)
CH54_RS17255	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS17255	PF03466	LysR substrate binding domain
CH54_RS17260	PF04241	CH54_RS17260
CH54_RS17265	PF01728	FtsJ-like methyltransferase
CH54_RS17270	PF01367	5'-3' exonuclease, C-terminal SAM fold
CH54_RS17270	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
CH54_RS17275	PF03641	Possible lysine decarboxylase
CH54_RS17275	PF11892	Domain of unknown function (DUF3412)
CH54_RS17275	PF14793	Domain of unknown function (DUF4478)
CH54_RS17280	PF14489	QueF-like protein
CH54_RS17280	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
CH54_RS17285	PF07348	Syd protein (SUKH-2)
CH54_RS17290	PF04287	tRNA pseudouridine synthase C
CH54_RS17295	PF00849	RNA pseudouridylate synthase
CH54_RS17300	PF00258	Flavodoxin
CH54_RS17305	PF11944	CH54_RS17305
CH54_RS17310	PF00132	Bacterial transferase hexapeptide (six repeats)
CH54_RS17310	PF14602	Hexapeptide repeat of succinyl-transferase
CH54_RS17310	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
CH54_RS17315	PF01842	ACT domain
CH54_RS17315	PF01909	Nucleotidyltransferase domain
CH54_RS17315	PF01966	HD domain
CH54_RS17315	PF08335	GlnD PII-uridylyltransferase
CH54_RS17320	PF00557	Metallopeptidase family M24
CH54_RS17325	PF00318	Ribosomal protein S2
CH54_RS17330	PF00889	Elongation factor TS
CH54_RS17335	PF00696	Amino acid kinase family
CH54_RS17340	PF01765	Ribosome recycling factor
CH54_RS17345	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
CH54_RS17345	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
CH54_RS17345	PF13288	DXP reductoisomerase C-terminal domain
CH54_RS17350	PF01255	Putative undecaprenyl diphosphate synthase
CH54_RS17355	PF01148	Cytidylyltransferase family
CH54_RS17360	PF00595	PDZ domain (Also known as DHR or GLGF)
CH54_RS17360	PF02163	Peptidase family M50
CH54_RS17365	PF01103	Surface antigen
CH54_RS17365	PF07244	Surface antigen variable number repeat
CH54_RS17370	PF03938	Outer membrane protein (OmpH-like)
CH54_RS17375	PF00132	Bacterial transferase hexapeptide (six repeats)
CH54_RS17375	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
CH54_RS17380	PF07977	FabA-like domain
CH54_RS17385	PF00132	Bacterial transferase hexapeptide (six repeats)
CH54_RS17385	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
CH54_RS17390	PF02684	CH54_RS17390
CH54_RS17395	PF01351	Ribonuclease HII
CH54_RS17400	PF01336	OB-fold nucleic acid binding domain
CH54_RS17400	PF02811	PHP domain
CH54_RS17400	PF07733	Bacterial DNA polymerase III alpha subunit
CH54_RS17400	PF14579	Helix-hairpin-helix motif
CH54_RS17405	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
CH54_RS17420	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CH54_RS17425	PF01171	PP-loop family
CH54_RS17425	PF09179	TilS substrate binding domain
CH54_RS17425	PF11734	TilS substrate C-terminal domain
CH54_RS17430	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
CH54_RS17435	PF07073	Modulator of Rho-dependent transcription termination (ROF)
CH54_RS17440	PF06786	CH54_RS17440
CH54_RS17445	PF07152	YaeQ protein
CH54_RS17450	PF00472	RF-1 domain
CH54_RS17455	PF04170	NlpE N-terminal domain
CH54_RS17455	PF17185	CH54_RS17455
CH54_RS17460	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CH54_RS17460	PF03129	Anticodon binding domain
CH54_RS17460	PF04073	Aminoacyl-tRNA editing domain
CH54_RS17465	PF01980	Uncharacterised protein family UPF0066
CH54_RS17470	PF16358	CH54_RS17470
CH54_RS17475	PF03180	NLPA lipoprotein
CH54_RS17480	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS17485	PF00005	ABC transporter
CH54_RS17485	PF09383	NIL domain
CH54_RS17490	PF13242	HAD-hyrolase-like
CH54_RS17520	PF10043	CH54_RS17520
CH54_RS17525	PF13091	PLD-like domain
CH54_RS17530	PF00583	Acetyltransferase (GNAT) family
CH54_RS17530	PF13380	CoA binding domain
CH54_RS17530	PF13549	ATP-grasp domain
CH54_RS17530	PF13607	Succinyl-CoA ligase like flavodoxin domain
CH54_RS17535	PF03942	CH54_RS17535
CH54_RS17540	PF00085	Thioredoxin
CH54_RS17545	PF00588	SpoU rRNA Methylase family
CH54_RS17545	PF08032	RNA 2'-O ribose methyltransferase substrate binding
CH54_RS17550	PF07690	Major Facilitator Superfamily
CH54_RS17555	PF00529	HlyD family secretion protein
CH54_RS17555	PF16576	CH54_RS17555
CH54_RS17560	PF01047	MarR family
CH54_RS17565	PF05437	CH54_RS17565
CH54_RS17570	PF03591	CH54_RS17570
CH54_RS17575	PF07690	Major Facilitator Superfamily
CH54_RS17580	PF00795	Carbon-nitrogen hydrolase
CH54_RS17585	PF00155	Aminotransferase class I and II
CH54_RS17590	PF00596	Class II Aldolase and Adducin N-terminal domain
CH54_RS17600	PF03079	ARD/ARD' family
CH54_RS17605	PF01008	Initiation factor 2 subunit family
CH54_RS17610	PF01636	Phosphotransferase enzyme family
CH54_RS17615	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
CH54_RS17615	PF02770	Acyl-CoA dehydrogenase, middle domain
CH54_RS17615	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
CH54_RS17615	PF09317	CH54_RS17615
CH54_RS17620	PF13580	SIS domain
CH54_RS17625	PF13230	Glutamine amidotransferases class-II
CH54_RS17630	PF03734	L,D-transpeptidase catalytic domain
CH54_RS17635	PF05896	CH54_RS17635
CH54_RS17635	PF11973	CH54_RS17635
CH54_RS17640	PF03116	CH54_RS17640
CH54_RS17645	PF04205	FMN-binding domain
CH54_RS17650	PF02508	CH54_RS17650
CH54_RS17655	PF02508	CH54_RS17655
CH54_RS17660	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH54_RS17660	PF00175	Oxidoreductase NAD-binding domain
CH54_RS17660	PF00970	Oxidoreductase FAD-binding domain
CH54_RS17665	PF02424	ApbE family
CH54_RS17670	PF04400	CH54_RS17670
CH54_RS17675	PF03009	Glycerophosphoryl diester phosphodiesterase family
CH54_RS17680	PF01820	D-ala D-ala ligase N-terminus
CH54_RS17680	PF07478	D-ala D-ala ligase C-terminus
CH54_RS17685	PF08348	CH54_RS17685
CH54_RS17685	PF13309	CH54_RS17685
CH54_RS17690	PF00291	Pyridoxal-phosphate dependent enzyme
CH54_RS17695	PF01042	Endoribonuclease L-PSP
CH54_RS17700	PF00817	impB/mucB/samB family
CH54_RS17700	PF11798	IMS family HHH motif
CH54_RS17700	PF11799	impB/mucB/samB family C-terminal domain
CH54_RS17705	PF01546	Peptidase family M20/M25/M40
CH54_RS17705	PF07687	Peptidase dimerisation domain
CH54_RS17710	PF02706	Chain length determinant protein
CH54_RS17720	PF02350	UDP-N-acetylglucosamine 2-epimerase
CH54_RS17725	PF01370	NAD dependent epimerase/dehydratase family
CH54_RS17725	PF05523	WxcM-like, C-terminal
CH54_RS17730	PF02719	Polysaccharide biosynthesis protein
CH54_RS17730	PF08485	Polysaccharide biosynthesis protein C-terminal
CH54_RS17735	PF00534	Glycosyl transferases group 1
CH54_RS17735	PF13439	Glycosyltransferase Family 4
CH54_RS17740	PF00534	Glycosyl transferases group 1
CH54_RS17745	PF14897	CH54_RS17745
CH54_RS17750	PF01943	CH54_RS17750
CH54_RS17750	PF14667	Polysaccharide biosynthesis C-terminal domain
CH54_RS17755	PF00534	Glycosyl transferases group 1
CH54_RS17760	PF00534	Glycosyl transferases group 1
CH54_RS17765	PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
CH54_RS17770	PF01467	Cytidylyltransferase
CH54_RS17780	PF00156	Phosphoribosyl transferase domain
CH54_RS17785	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
CH54_RS17790	PF07417	Transcriptional regulator Crl
CH54_RS17795	PF00696	Amino acid kinase family
CH54_RS17795	PF01472	PUA domain
CH54_RS17800	PF00171	Aldehyde dehydrogenase family
CH54_RS17805	PF00294	pfkB family carbohydrate kinase
CH54_RS17805	PF13412	Winged helix-turn-helix DNA-binding
CH54_RS17810	PF04227	Indigoidine synthase A like protein
CH54_RS17815	PF01773	Na+ dependent nucleoside transporter N-terminus
CH54_RS17815	PF07662	Na+ dependent nucleoside transporter C-terminus
CH54_RS17820	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS17820	PF07702	UTRA domain
CH54_RS17825	PF00367	phosphotransferase system, EIIB
CH54_RS17825	PF02378	Phosphotransferase system, EIIC
CH54_RS17830	PF02056	Family 4 glycosyl hydrolase
CH54_RS17830	PF11975	Family 4 glycosyl hydrolase C-terminal domain
CH54_RS17835	PF07238	PilZ domain
CH54_RS17835	PF07317	Flagellar regulator YcgR
CH54_RS17840	PF06165	Glycosyltransferase family 36
CH54_RS17840	PF10091	Putative glucoamylase
CH54_RS17840	PF17167	CH54_RS17840
CH54_RS17850	PF00583	Acetyltransferase (GNAT) family
CH54_RS17855	PF08241	Methyltransferase domain
CH54_RS17860	PF07338	Protein of unknown function (DUF1471)
CH54_RS17875	PF01202	Shikimate kinase
CH54_RS17880	PF06865	Protein of unknown function (DUF1255)
CH54_RS17885	PF04381	Putative exonuclease, RdgC
CH54_RS17890	PF00480	ROK family
CH54_RS17895	PF13476	AAA domain
CH54_RS17895	PF13558	Putative exonuclease SbcCD, C subunit
CH54_RS17900	PF00149	Calcineurin-like phosphoesterase
CH54_RS17900	PF12320	Type 5 capsule protein repressor C-terminal domain
CH54_RS17905	PF00072	Response regulator receiver domain
CH54_RS17905	PF00486	Transcriptional regulatory protein, C terminal
CH54_RS17910	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS17910	PF00989	PAS fold
CH54_RS17910	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS17910	PF11808	CH54_RS17910
CH54_RS17915	PF12849	PBP superfamily domain
CH54_RS17920	PF05525	CH54_RS17920
CH54_RS17925	PF00324	Amino acid permease
CH54_RS17930	PF00128	Alpha amylase, catalytic domain
CH54_RS17935	PF00106	short chain dehydrogenase
CH54_RS17940	PF01019	Gamma-glutamyltranspeptidase
CH54_RS17945	PF00578	AhpC/TSA family
CH54_RS17945	PF10417	C-terminal domain of 1-Cys peroxiredoxin
CH54_RS17950	PF04336	CH54_RS17950
CH54_RS17955	PF02547	Queuosine biosynthesis protein
CH54_RS17960	PF03797	Autotransporter beta-domain
CH54_RS17965	PF12951	CH54_RS17965
CH54_RS17980	PF01702	Queuine tRNA-ribosyltransferase
CH54_RS17985	PF02699	Preprotein translocase subunit
CH54_RS17990	PF02355	Protein export membrane protein
CH54_RS17990	PF07549	SecD/SecF GG Motif
CH54_RS17990	PF13721	SecD export protein N-terminal TM region
CH54_RS17995	PF02355	Protein export membrane protein
CH54_RS17995	PF07549	SecD/SecF GG Motif
CH54_RS18005	PF03477	ATP cone domain
CH54_RS18010	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
CH54_RS18010	PF01872	RibD C-terminal domain
CH54_RS18015	PF00885	6,7-dimethyl-8-ribityllumazine synthase
CH54_RS18020	PF01029	NusB family
CH54_RS18025	PF00586	AIR synthase related protein, N-terminal domain
CH54_RS18025	PF02769	AIR synthase related protein, C-terminal domain
CH54_RS18030	PF04608	Phosphatidylglycerophosphatase A
CH54_RS18035	PF02779	Transketolase, pyrimidine binding domain
CH54_RS18035	PF02780	Transketolase, C-terminal domain
CH54_RS18035	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
CH54_RS18040	PF00348	Polyprenyl synthetase
CH54_RS18045	PF02609	Exonuclease VII small subunit
CH54_RS18050	PF02568	Thiamine biosynthesis protein (ThiI)
CH54_RS18050	PF02926	THUMP domain
CH54_RS18055	PF01965	DJ-1/PfpI family
CH54_RS18060	PF02558	Ketopantoate reductase PanE/ApbA
CH54_RS18060	PF08546	Ketopantoate reductase PanE/ApbA C terminal
CH54_RS18065	PF04461	Protein of unknown function (DUF520)
CH54_RS18070	PF07690	Major Facilitator Superfamily
CH54_RS18075	PF01040	UbiA prenyltransferase family
CH54_RS18080	PF03626	CH54_RS18080
CH54_RS18085	PF00510	Cytochrome c oxidase subunit III
CH54_RS18090	PF00115	Cytochrome C and Quinol oxidase polypeptide I
CH54_RS18095	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
CH54_RS18095	PF06481	COX Aromatic Rich Motif
CH54_RS18100	PF03502	Nucleoside-specific channel-forming protein, Tsx
CH54_RS18105	PF07690	Major Facilitator Superfamily
CH54_RS18110	PF03923	CH54_RS18110
CH54_RS18110	PF08139	CH54_RS18110
CH54_RS18115	PF01722	BolA-like protein
CH54_RS18120	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CH54_RS18120	PF05697	Bacterial trigger factor protein (TF)
CH54_RS18120	PF05698	Bacterial trigger factor protein (TF) C-terminus
CH54_RS18125	PF00574	Clp protease
CH54_RS18130	PF06689	ClpX C4-type zinc finger
CH54_RS18130	PF07724	AAA domain (Cdc48 subfamily)
CH54_RS18130	PF10431	C-terminal, D2-small domain, of ClpB protein
CH54_RS18135	PF00004	ATPase family associated with various cellular activities (AAA)
CH54_RS18135	PF02190	ATP-dependent protease La (LON) domain
CH54_RS18135	PF05362	Lon protease (S16) C-terminal proteolytic domain
CH54_RS18140	PF00216	Bacterial DNA-binding protein
CH54_RS18145	PF13145	PPIC-type PPIASE domain
CH54_RS18145	PF13624	SurA N-terminal domain
CH54_RS18150	PF12836	Helix-hairpin-helix motif
CH54_RS18155	PF13279	Thioesterase-like superfamily
CH54_RS18160	PF06508	Queuosine biosynthesis protein QueC
CH54_RS18165	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS18165	PF12793	CH54_RS18165
CH54_RS18170	PF08282	haloacid dehalogenase-like hydrolase
CH54_RS18175	PF00291	Pyridoxal-phosphate dependent enzyme
CH54_RS18180	PF01037	AsnC family
CH54_RS18180	PF13412	Winged helix-turn-helix DNA-binding
CH54_RS18185	PF00005	ABC transporter
CH54_RS18185	PF00664	ABC transporter transmembrane region
CH54_RS18190	PF00005	ABC transporter
CH54_RS18190	PF00664	ABC transporter transmembrane region
CH54_RS18195	PF00543	Nitrogen regulatory protein P-II
CH54_RS18200	PF00909	Ammonium Transporter Family
CH54_RS18205	PF13622	Thioesterase-like superfamily
CH54_RS18210	PF09619	Type III secretion system lipoprotein chaperone (YscW)
CH54_RS18215	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
CH54_RS18220	PF05321	Haemolysin expression modulating protein
CH54_RS18225	PF10757	CH54_RS18225
CH54_RS18235	PF00005	ABC transporter
CH54_RS18240	PF00950	CH54_RS18240
CH54_RS18245	PF01297	Periplasmic solute binding protein family
CH54_RS18250	PF00444	Ribosomal protein L36
CH54_RS18255	PF01197	Ribosomal protein L31
CH54_RS18260	PF10797	CH54_RS18260
CH54_RS18265	PF10941	CH54_RS18265
CH54_RS18270	PF01676	Metalloenzyme superfamily
CH54_RS18275	PF01168	Alanine racemase, N-terminal domain
CH54_RS18280	PF00874	PRD domain
CH54_RS18285	PF00873	AcrB/AcrD/AcrF family
CH54_RS18290	PF00529	HlyD family secretion protein
CH54_RS18290	PF16576	CH54_RS18290
CH54_RS18295	PF00440	Bacterial regulatory proteins, tetR family
CH54_RS18295	PF08361	MAATS-type transcriptional repressor, C-terminal region
CH54_RS18300	PF02635	DsrE/DsrF-like family
CH54_RS18305	PF00924	Mechanosensitive ion channel
CH54_RS18305	PF12794	CH54_RS18305
CH54_RS18305	PF12795	CH54_RS18305
CH54_RS18310	PF10689	CH54_RS18310
CH54_RS18315	PF07445	Primosomal replication protein priB and priC
CH54_RS18320	PF04304	CH54_RS18320
CH54_RS18325	PF00156	Phosphoribosyl transferase domain
CH54_RS18330	PF12168	CH54_RS18330
CH54_RS18330	PF12169	DNA polymerase III subunits gamma and tau domain III
CH54_RS18330	PF12170	DNA polymerase III tau subunit V interacting with alpha
CH54_RS18330	PF13177	DNA polymerase III, delta subunit
CH54_RS18335	PF02575	YbaB/EbfC DNA-binding family
CH54_RS18340	PF02132	RecR protein
CH54_RS18340	PF13662	Toprim domain
CH54_RS18345	PF00183	Hsp90 protein
CH54_RS18345	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS18350	PF00406	Adenylate kinase
CH54_RS18350	PF05191	Adenylate kinase, active site lid
CH54_RS18355	PF00762	Ferrochelatase
CH54_RS18360	PF01943	CH54_RS18360
CH54_RS18365	PF00535	Glycosyl transferase family 2
CH54_RS18370	PF00535	Glycosyl transferase family 2
CH54_RS18375	PF00534	Glycosyl transferases group 1
CH54_RS18375	PF13439	Glycosyltransferase Family 4
CH54_RS18380	PF00534	Glycosyl transferases group 1
CH54_RS18380	PF13439	Glycosyltransferase Family 4
CH54_RS18385	PF00953	Glycosyl transferase family 4
CH54_RS18390	PF02719	Polysaccharide biosynthesis protein
CH54_RS18395	PF00534	Glycosyl transferases group 1
CH54_RS18395	PF13439	Glycosyltransferase Family 4
CH54_RS18400	PF01370	NAD dependent epimerase/dehydratase family
CH54_RS18405	PF00294	pfkB family carbohydrate kinase
CH54_RS18410	PF00999	Sodium/hydrogen exchanger family
CH54_RS18410	PF02254	TrkA-N domain
CH54_RS18415	PF07690	Major Facilitator Superfamily
CH54_RS18420	PF00149	Calcineurin-like phosphoesterase
CH54_RS18420	PF02872	5'-nucleotidase, C-terminal domain
CH54_RS18425	PF04073	Aminoacyl-tRNA editing domain
CH54_RS18430	PF01963	CH54_RS18430
CH54_RS18435	PF00122	E1-E2 ATPase
CH54_RS18435	PF00403	Heavy-metal-associated domain
CH54_RS18435	PF00702	haloacid dehalogenase-like hydrolase
CH54_RS18440	PF13411	MerR HTH family regulatory protein
CH54_RS18445	PF01957	NfeD-like C-terminal, partner-binding
CH54_RS18450	PF01145	SPFH domain / Band 7 family
CH54_RS18455	PF00085	Thioredoxin
CH54_RS18455	PF14559	Tetratricopeptide repeat
CH54_RS18455	PF14561	Tetratricopeptide repeat
CH54_RS18460	PF00106	short chain dehydrogenase
CH54_RS18465	PF13472	GDSL-like Lipase/Acylhydrolase family
CH54_RS18470	PF00005	ABC transporter
CH54_RS18475	PF02687	CH54_RS18475
CH54_RS18480	PF02222	ATP-grasp domain
CH54_RS18485	PF00731	AIR carboxylase
CH54_RS18490	PF12850	Calcineurin-like phosphoesterase superfamily domain
CH54_RS18495	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
CH54_RS18500	PF01406	tRNA synthetases class I (C) catalytic domain
CH54_RS18500	PF09190	DALR domain
CH54_RS18505	PF13275	S4 domain
CH54_RS18510	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
CH54_RS18510	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
CH54_RS18520	PF00589	Phage integrase family
CH54_RS18530	PF05869	CH54_RS18530
CH54_RS18550	PF00847	AP2 domain
CH54_RS18550	PF13392	HNH endonuclease
CH54_RS18565	PF07026	CH54_RS18565
CH54_RS18570	PF09588	YqaJ-like viral recombinase domain
CH54_RS18575	PF03837	CH54_RS18575
CH54_RS18600	PF14163	CH54_RS18600
CH54_RS18620	PF10965	CH54_RS18620
CH54_RS18625	PF10546	CH54_RS18625
CH54_RS18630	PF00717	Peptidase S24-like
CH54_RS18630	PF01381	Helix-turn-helix
CH54_RS18635	PF09048	Cro
CH54_RS18640	PF05269	Bacteriophage CII protein
CH54_RS18650	PF04492	CH54_RS18650
CH54_RS18655	PF00772	DnaB-like helicase N terminal domain
CH54_RS18655	PF03796	DnaB-like helicase C terminal domain
CH54_RS18680	PF07105	CH54_RS18680
CH54_RS18685	PF10765	Protein of unknown function (DUF2591)
CH54_RS18690	PF07102	Protein of unknown function (DUF1364)
CH54_RS18695	PF05866	Endodeoxyribonuclease RusA
CH54_RS18705	PF14359	Domain of unknown function (DUF4406)
CH54_RS18710	PF16080	CH54_RS18710
CH54_RS18715	PF00959	Phage lysozyme
CH54_RS18725	PF03374	CH54_RS18725
CH54_RS18725	PF09669	CH54_RS18725
CH54_RS18735	PF03592	Terminase small subunit
CH54_RS18740	PF04466	Phage terminase large subunit
CH54_RS18745	PF06381	CH54_RS18745
CH54_RS18750	PF04233	CH54_RS18750
CH54_RS18805	PF02368	Bacterial Ig-like domain (group 2)
CH54_RS18815	PF06120	CH54_RS18815
CH54_RS18830	PF00877	NlpC/P60 family
CH54_RS18840	PF03869	Arc-like DNA binding domain
CH54_RS18845	PF10547	CH54_RS18845
CH54_RS18850	PF09669	CH54_RS18850
CH54_RS18860	PF10547	CH54_RS18860
CH54_RS18860	PF10548	CH54_RS18860
CH54_RS18865	PF03869	Arc-like DNA binding domain
CH54_RS18870	PF03869	Arc-like DNA binding domain
CH54_RS18880	PF13472	GDSL-like Lipase/Acylhydrolase family
CH54_RS18895	PF01226	Formate/nitrite transporter
CH54_RS18900	PF00005	ABC transporter
CH54_RS18905	PF03379	CH54_RS18905
CH54_RS18910	PF01578	CH54_RS18910
CH54_RS18915	PF04995	CH54_RS18915
CH54_RS18920	PF03100	CcmE
CH54_RS18925	PF01578	CH54_RS18925
CH54_RS18925	PF16327	CH54_RS18925
CH54_RS18930	PF08534	Redoxin
CH54_RS18935	PF03918	Cytochrome C biogenesis protein
CH54_RS18940	PF14559	Tetratricopeptide repeat
CH54_RS18945	PF04333	CH54_RS18945
CH54_RS18950	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
CH54_RS18955	PF04175	Protein of unknown function (DUF406)
CH54_RS18960	PF00108	Thiolase, N-terminal domain
CH54_RS18960	PF02803	Thiolase, C-terminal domain
CH54_RS18965	PF00378	Enoyl-CoA hydratase/isomerase family
CH54_RS18965	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
CH54_RS18965	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
CH54_RS18970	PF00300	Histidine phosphatase superfamily (branch 1)
CH54_RS18975	PF01713	Smr domain
CH54_RS18980	PF05175	Methyltransferase small domain
CH54_RS18985	PF01264	Chorismate synthase
CH54_RS18990	PF03411	Penicillin-insensitive murein endopeptidase
CH54_RS18995	PF01925	CH54_RS18995
CH54_RS19000	PF04315	CH54_RS19000
CH54_RS19005	PF08891	CH54_RS19005
CH54_RS19010	PF01266	FAD dependent oxidoreductase
CH54_RS19010	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
CH54_RS19015	PF00109	Beta-ketoacyl synthase, N-terminal domain
CH54_RS19015	PF02801	Beta-ketoacyl synthase, C-terminal domain
CH54_RS19020	PF00990	GGDEF domain
CH54_RS19020	PF08447	PAS fold
CH54_RS19025	PF01177	Asp/Glu/Hydantoin racemase
CH54_RS19030	PF02264	LamB porin
CH54_RS19035	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
CH54_RS19040	PF00232	Glycosyl hydrolase family 1
CH54_RS19045	PF02378	Phosphotransferase system, EIIC
CH54_RS19050	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH54_RS19055	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS19055	PF13377	Periplasmic binding protein-like domain
CH54_RS19060	PF00328	Histidine phosphatase superfamily (branch 2)
CH54_RS19065	PF03600	Citrate transporter
CH54_RS19080	PF02683	CH54_RS19080
CH54_RS19080	PF11412	Disulphide bond corrector protein DsbC
CH54_RS19080	PF13899	Thioredoxin-like
CH54_RS19085	PF13462	Thioredoxin
CH54_RS19090	PF00578	AhpC/TSA family
CH54_RS19095	PF00155	Aminotransferase class I and II
CH54_RS19095	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS19100	PF00892	EamA-like transporter family
CH54_RS19105	PF00892	EamA-like transporter family
CH54_RS19110	PF07883	Cupin domain
CH54_RS19110	PF12833	Helix-turn-helix domain
CH54_RS19115	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH54_RS19115	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH54_RS19115	PF11890	Domain of unknown function (DUF3410)
CH54_RS19120	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CH54_RS19120	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CH54_RS19125	PF01416	tRNA pseudouridine synthase
CH54_RS19130	PF09335	CH54_RS19130
CH54_RS19135	PF01039	Carboxyl transferase domain
CH54_RS19140	PF02875	Mur ligase family, glutamate ligase domain
CH54_RS19140	PF08245	Mur ligase middle domain
CH54_RS19145	PF05036	Sporulation related domain
CH54_RS19150	PF02674	CH54_RS19150
CH54_RS19155	PF00156	Phosphoribosyl transferase domain
CH54_RS19155	PF13522	Glutamine amidotransferase domain
CH54_RS19160	PF02441	Flavoprotein
CH54_RS19165	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS19170	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS19175	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS19180	PF00005	ABC transporter
CH54_RS19185	PF01370	NAD dependent epimerase/dehydratase family
CH54_RS19185	PF08338	Domain of unknown function (DUF1731)
CH54_RS19190	PF00563	EAL domain
CH54_RS19195	PF12850	Calcineurin-like phosphoesterase superfamily domain
CH54_RS19200	PF00293	NUDIX domain
CH54_RS19205	PF03611	CH54_RS19205
CH54_RS19210	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH54_RS19215	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH54_RS19220	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS19220	PF13377	Periplasmic binding protein-like domain
CH54_RS19225	PF01515	Phosphate acetyl/butaryl transferase
CH54_RS19225	PF07085	DRTGG domain
CH54_RS19225	PF13500	AAA domain
CH54_RS19230	PF00871	Acetokinase family
CH54_RS19235	PF04217	CH54_RS19235
CH54_RS19240	PF03887	YfbU domain
CH54_RS19245	PF13419	Haloacid dehalogenase-like hydrolase
CH54_RS19255	PF02080	TrkA-C domain
CH54_RS19255	PF03600	Citrate transporter
CH54_RS19260	PF13023	HD domain
CH54_RS19265	PF00155	Aminotransferase class I and II
CH54_RS19270	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS19270	PF03466	LysR substrate binding domain
CH54_RS19275	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
CH54_RS19280	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
CH54_RS19285	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
CH54_RS19285	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
CH54_RS19290	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
CH54_RS19295	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CH54_RS19295	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CH54_RS19300	PF00384	Molybdopterin oxidoreductase
CH54_RS19300	PF01568	Molydopterin dinucleotide binding domain
CH54_RS19300	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CH54_RS19300	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CH54_RS19300	PF13510	2Fe-2S iron-sulfur cluster binding domain
CH54_RS19305	PF00146	NADH dehydrogenase
CH54_RS19310	PF12838	4Fe-4S dicluster domain
CH54_RS19315	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
CH54_RS19320	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
CH54_RS19325	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH54_RS19325	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
CH54_RS19330	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH54_RS19335	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CH54_RS19345	PF06496	CH54_RS19345
CH54_RS19350	PF04074	Domain of unknown function (DUF386)
CH54_RS19355	PF01202	Shikimate kinase
CH54_RS19360	PF00106	short chain dehydrogenase
CH54_RS19365	PF00356	Bacterial regulatory proteins, lacI family
CH54_RS19365	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
CH54_RS19370	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CH54_RS19370	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CH54_RS19375	PF07690	Major Facilitator Superfamily
CH54_RS19380	PF03928	Domain of unknown function (DUF336)
CH54_RS19385	PF00920	Dehydratase family
CH54_RS19390	PF05957	CH54_RS19390
CH54_RS19395	PF03797	Autotransporter beta-domain
CH54_RS19400	PF00425	chorismate binding enzyme
CH54_RS19405	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH54_RS19405	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH54_RS19405	PF16582	CH54_RS19405
CH54_RS19410	PF12697	Alpha/beta hydrolase family
CH54_RS19415	PF00378	Enoyl-CoA hydratase/isomerase family
CH54_RS19420	PF13378	Enolase C-terminal domain-like
CH54_RS19425	PF00501	AMP-binding enzyme
CH54_RS19425	PF13193	AMP-binding enzyme C-terminal domain
CH54_RS19430	PF00199	Catalase
CH54_RS19430	PF06628	Catalase-related immune-responsive
CH54_RS19435	PF07437	CH54_RS19435
CH54_RS19440	PF03222	Tryptophan/tyrosine permease family
CH54_RS19445	PF00994	Probable molybdopterin binding domain
CH54_RS19450	PF03974	Ecotin
CH54_RS19455	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH54_RS19460	PF00268	Ribonucleotide reductase, small chain
CH54_RS19465	PF00317	Ribonucleotide reductase, all-alpha domain
CH54_RS19465	PF02867	Ribonucleotide reductase, barrel domain
CH54_RS19465	PF03477	ATP cone domain
CH54_RS19470	PF13489	Methyltransferase domain
CH54_RS19475	PF00521	DNA gyrase/topoisomerase IV, subunit A
CH54_RS19475	PF03989	DNA gyrase C-terminal domain, beta-propeller
CH54_RS19480	PF00072	Response regulator receiver domain
CH54_RS19480	PF00512	His Kinase A (phospho-acceptor) domain
CH54_RS19480	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS19480	PF09456	RcsC Alpha-Beta-Loop (ABL)
CH54_RS19485	PF00072	Response regulator receiver domain
CH54_RS19485	PF00196	Bacterial regulatory proteins, luxR family
CH54_RS19490	PF01627	Hpt domain
CH54_RS19490	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CH54_RS19490	PF16359	CH54_RS19490
CH54_RS19495	PF07690	Major Facilitator Superfamily
CH54_RS19500	PF12245	Bacterial Ig-like domain (group 3)
CH54_RS19505	PF02321	Outer membrane efflux protein
CH54_RS19510	PF00005	ABC transporter
CH54_RS19510	PF00664	ABC transporter transmembrane region
CH54_RS19515	PF13437	HlyD family secretion protein
CH54_RS19515	PF13533	Biotin-lipoyl like
CH54_RS19520	PF00267	Gram-negative porin
CH54_RS19535	PF00144	Beta-lactamase
CH54_RS19540	PF13347	MFS/sugar transport protein
CH54_RS19545	PF12706	Beta-lactamase superfamily domain
CH54_RS19550	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CH54_RS19550	PF00672	HAMP domain
CH54_RS19550	PF02743	Cache domain
CH54_RS19555	PF01278	Omptin family
CH54_RS19560	PF06183	DinI-like family
CH54_RS19570	PF01380	SIS domain
CH54_RS19570	PF01418	Helix-turn-helix domain, rpiR family
CH54_RS19575	PF00367	phosphotransferase system, EIIB
CH54_RS19575	PF02378	Phosphotransferase system, EIIC
CH54_RS19580	PF00232	Glycosyl hydrolase family 1
CH54_RS19590	PF00884	Sulfatase
CH54_RS19590	PF11893	CH54_RS19590
CH54_RS19595	PF07208	Protein of unknown function (DUF1414)
CH54_RS19600	PF04245	CH54_RS19600
CH54_RS19605	PF01386	Ribosomal L25p family
CH54_RS19610	PF00271	Helicase conserved C-terminal domain
CH54_RS19610	PF04851	Type III restriction enzyme, res subunit
CH54_RS19615	PF00849	RNA pseudouridylate synthase
CH54_RS19615	PF01479	S4 domain
CH54_RS19620	PF07690	Major Facilitator Superfamily
CH54_RS19630	PF13989	CH54_RS19630
CH54_RS19635	PF00005	ABC transporter
CH54_RS19635	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CH54_RS19640	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS19640	PF12911	CH54_RS19640
CH54_RS19645	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS19650	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CH54_RS19655	PF00563	EAL domain
CH54_RS19655	PF12792	CH54_RS19655
CH54_RS19665	PF00877	NlpC/P60 family
CH54_RS19680	PF02492	CobW/HypB/UreG, nucleotide-binding domain
CH54_RS19680	PF07683	Cobalamin synthesis protein cobW C-terminal domain
CH54_RS19690	PF00392	Bacterial regulatory proteins, gntR family
CH54_RS19690	PF07729	FCD domain
CH54_RS19695	PF01232	Mannitol dehydrogenase Rossmann domain
CH54_RS19695	PF08125	Mannitol dehydrogenase C-terminal domain
CH54_RS19700	PF03786	D-mannonate dehydratase (UxuA)
CH54_RS19705	PF01132	Elongation factor P (EF-P) OB domain
CH54_RS19705	PF08207	Elongation factor P (EF-P) KOW-like domain
CH54_RS19705	PF09285	Elongation factor P, C-terminal
CH54_RS19710	PF03222	Tryptophan/tyrosine permease family
CH54_RS19715	PF03692	CH54_RS19715
CH54_RS19725	PF00293	NUDIX domain
CH54_RS19730	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CH54_RS19730	PF00381	PTS HPr component phosphorylation site
CH54_RS19735	PF00294	pfkB family carbohydrate kinase
CH54_RS19740	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CH54_RS19740	PF02378	Phosphotransferase system, EIIC
CH54_RS19745	PF01261	Xylose isomerase-like TIM barrel
CH54_RS19750	PF03601	CH54_RS19750
CH54_RS19755	PF00877	NlpC/P60 family
CH54_RS19755	PF12913	SH3 domain of the SH3b1 type
CH54_RS19755	PF12914	SH3 domain of SH3b2 type
CH54_RS19765	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CH54_RS19765	PF03466	LysR substrate binding domain
CH54_RS19770	PF00324	Amino acid permease
CH54_RS19775	PF01032	FecCD transport family
CH54_RS19780	PF00593	TonB dependent receptor
CH54_RS19780	PF07715	TonB-dependent Receptor Plug Domain
CH54_RS19785	PF00043	Glutathione S-transferase, C-terminal domain
CH54_RS19785	PF13417	Glutathione S-transferase, N-terminal domain
CH54_RS19790	PF12710	haloacid dehalogenase-like hydrolase
CH54_RS19795	PF03171	2OG-Fe(II) oxygenase superfamily
CH54_RS19795	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
CH54_RS19800	PF03180	NLPA lipoprotein
CH54_RS19805	PF00005	ABC transporter
CH54_RS19805	PF09383	NIL domain
CH54_RS19810	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS19815	PF14076	CH54_RS19815
CH54_RS19820	PF01381	Helix-turn-helix
CH54_RS19825	PF01053	Cys/Met metabolism PLP-dependent enzyme
CH54_RS19830	PF00291	Pyridoxal-phosphate dependent enzyme
CH54_RS19830	PF00571	CBS domain
CH54_RS19835	PF00768	D-alanyl-D-alanine carboxypeptidase
CH54_RS19835	PF07943	Penicillin-binding protein 5, C-terminal domain
CH54_RS19840	PF03313	CH54_RS19840
CH54_RS19840	PF03315	Serine dehydratase beta chain
CH54_RS19845	PF03222	Tryptophan/tyrosine permease family
CH54_RS19850	PF00455	CH54_RS19850
CH54_RS19850	PF08220	DeoR-like helix-turn-helix domain
CH54_RS19855	PF01791	DeoC/LacD family aldolase
CH54_RS19860	PF01569	PAP2 superfamily
CH54_RS19865	PF01569	PAP2 superfamily
CH54_RS19870	PF02080	TrkA-C domain
CH54_RS19870	PF06826	CH54_RS19870
CH54_RS19875	PF00462	Glutaredoxin
CH54_RS19880	PF07214	CH54_RS19880
CH54_RS19885	PF10722	Putative bacterial sensory transduction regulator
CH54_RS19890	PF13416	Bacterial extracellular solute-binding protein
CH54_RS19895	PF00005	ABC transporter
CH54_RS19895	PF08402	TOBE domain
CH54_RS19900	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS19905	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS19910	PF10767	CH54_RS19910
CH54_RS19915	PF05958	tRNA (Uracil-5-)-methyltransferase
CH54_RS19920	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS19925	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS19930	PF00528	Binding-protein-dependent transport system inner membrane component
CH54_RS19935	PF00497	Bacterial extracellular solute-binding proteins, family 3
CH54_RS19940	PF00005	ABC transporter
CH54_RS19945	PF12883	Protein of unknown function (DUF3828)
CH54_RS19950	PF01370	NAD dependent epimerase/dehydratase family
CH54_RS19955	PF11066	CH54_RS19955
CH54_RS19955	PF13460	NADH(P)-binding
CH54_RS19960	PF01212	Beta-eliminating lyase
CH54_RS19965	PF04072	Leucine carboxyl methyltransferase
CH54_RS19970	PF00205	Thiamine pyrophosphate enzyme, central domain
CH54_RS19970	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CH54_RS19970	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CH54_RS19975	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH54_RS19975	PF00175	Oxidoreductase NAD-binding domain
CH54_RS19975	PF00970	Oxidoreductase FAD-binding domain
CH54_RS19980	PF03063	Prismane/CO dehydrogenase family
CH54_RS19985	PF03956	CH54_RS19985
CH54_RS19990	PF11398	Protein of unknown function (DUF2813)
CH54_RS19995	PF04393	CH54_RS19995
CH54_RS20000	PF16576	CH54_RS20000
CH54_RS20005	PF00005	ABC transporter
CH54_RS20005	PF02687	CH54_RS20005
CH54_RS20005	PF12704	MacB-like periplasmic core domain
CH54_RS20010	PF00313	'Cold-shock' DNA-binding domain
CH54_RS20015	PF02617	ATP-dependent Clp protease adaptor protein ClpS
CH54_RS20020	PF00004	ATPase family associated with various cellular activities (AAA)
CH54_RS20020	PF02861	Clp amino terminal domain
CH54_RS20020	PF07724	AAA domain (Cdc48 subfamily)
CH54_RS20020	PF10431	C-terminal, D2-small domain, of ClpB protein
CH54_RS20025	PF01176	Translation initiation factor 1A / IF-1
CH54_RS20030	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
CH54_RS20035	PF00005	ABC transporter
CH54_RS20035	PF00664	ABC transporter transmembrane region
CH54_RS20040	PF00005	ABC transporter
CH54_RS20040	PF00664	ABC transporter transmembrane region
CH54_RS20045	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CH54_RS20050	PF01037	AsnC family
CH54_RS20050	PF13412	Winged helix-turn-helix DNA-binding
CH54_RS20055	PF01580	FtsK/SpoIIIE family
CH54_RS20055	PF09397	Ftsk gamma domain
CH54_RS20055	PF13491	CH54_RS20055
CH54_RS20060	PF03548	Outer membrane lipoprotein carrier protein LolA
CH54_RS20065	PF00004	ATPase family associated with various cellular activities (AAA)
CH54_RS20065	PF12002	MgsA AAA+ ATPase C terminal
CH54_RS20065	PF16193	CH54_RS20065
CH54_RS20070	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CH54_RS20070	PF02403	Seryl-tRNA synthetase N-terminal domain
CH54_RS20075	PF07690	Major Facilitator Superfamily
CH54_RS20080	PF04055	Radical SAM superfamily
CH54_RS20080	PF13353	4Fe-4S single cluster domain
CH54_RS20085	PF01228	Glycine radical
CH54_RS20085	PF02901	Pyruvate formate lyase
CH54_RS20090	PF01226	Formate/nitrite transporter
CH54_RS20095	PF02624	YcaO-like family
CH54_RS20100	PF00710	Asparaginase
CH54_RS20105	PF04239	Protein of unknown function (DUF421)
CH54_RS20110	PF00266	Aminotransferase class-V
CH54_RS20115	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CH54_RS20120	PF02224	Cytidylate kinase
CH54_RS20125	PF00575	S1 RNA binding domain
CH54_RS20130	PF00216	Bacterial DNA-binding protein
CH54_RS20135	PF00753	Metallo-beta-lactamase superfamily
CH54_RS20135	PF03772	CH54_RS20135
CH54_RS20135	PF13567	CH54_RS20135
CH54_RS20140	PF00005	ABC transporter
CH54_RS20140	PF00664	ABC transporter transmembrane region
CH54_RS20145	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
CH54_RS20150	PF07063	Domain of unknown function (DUF1338)
CH54_RS20155	PF00313	'Cold-shock' DNA-binding domain
CH54_RS20160	PF03966	Trm112p-like protein
CH54_RS20165	PF02348	Cytidylyltransferase
CH54_RS20170	PF03881	Fructosamine kinase
CH54_RS20175	PF02698	DUF218 domain
CH54_RS20180	PF13847	Methyltransferase domain
CH54_RS20185	PF03882	KicB killing factor
CH54_RS20185	PF17192	CH54_RS20185
CH54_RS20185	PF17193	CH54_RS20185
CH54_RS20190	PF04288	MukE-like family
CH54_RS20195	PF04310	MukB N-terminal
CH54_RS20195	PF13558	Putative exonuclease SbcCD, C subunit
CH54_RS20195	PF16330	CH54_RS20195
CH54_RS20200	PF01471	Putative peptidoglycan binding domain
CH54_RS20200	PF03734	L,D-transpeptidase catalytic domain
CH54_RS20205	PF05951	CH54_RS20205
CH54_RS20210	PF00753	Metallo-beta-lactamase superfamily
CH54_RS20215	PF00563	EAL domain
CH54_RS20215	PF12792	CH54_RS20215
CH54_RS20220	PF00155	Aminotransferase class I and II
CH54_RS20225	PF00267	Gram-negative porin
CH54_RS20230	PF00152	tRNA synthetases class II (D, K and N)
CH54_RS20230	PF01336	OB-fold nucleic acid binding domain
CH54_RS20235	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
CH54_RS20240	PF01433	Peptidase family M1
CH54_RS20240	PF11940	Domain of unknown function (DUF3458)
CH54_RS20245	PF01180	Dihydroorotate dehydrogenase
CH54_RS20250	PF07126	CH54_RS20250
CH54_RS20255	PF00111	2Fe-2S iron-sulfur cluster binding domain
CH54_RS20255	PF03473	MOSC domain
CH54_RS20255	PF03476	MOSC N-terminal beta barrel domain
CH54_RS20270	PF03245	CH54_RS20270
CH54_RS20285	PF01844	HNH endonuclease
CH54_RS20290	PF03212	Pertactin
CH54_RS20290	PF03797	Autotransporter beta-domain
CH54_RS20300	PF13391	CH54_RS20300
CH54_RS20325	PF06932	CH54_RS20325