CH54_RS00005 SM00981 CH54_RS00005 CH54_RS00010 SM00382 ATPases associated with a variety of cellular activities CH54_RS00030 SM00825 Beta-ketoacyl synthase CH54_RS00085 SM00851 MGS-like domain CH54_RS00095 SM00881 CoA binding domain CH54_RS00100 SM00992 Hemimethylated DNA-binding protein YccV like CH54_RS00105 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH54_RS00205 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS00205 SM00448 cheY-homologous receiver domain CH54_RS00210 SM01091 Transporter associated domain CH54_RS00275 SM00450 Rhodanese Homology Domain CH54_RS00285 SM00421 helix_turn_helix, Lux Regulon CH54_RS00320 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_RS00325 SM00363 S4 RNA-binding domain CH54_RS00355 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH54_RS00360 SM00822 CH54_RS00360 CH54_RS00370 SM00825 Beta-ketoacyl synthase CH54_RS00410 SM00382 ATPases associated with a variety of cellular activities CH54_RS00475 SM00487 DEAD-like helicases superfamily CH54_RS00475 SM00490 helicase superfamily c-terminal domain CH54_RS00475 SM00982 CH54_RS00475 CH54_RS00475 SM01058 CarD-like/TRCF domain CH54_RS00485 SM00382 ATPases associated with a variety of cellular activities CH54_RS00510 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH54_RS00515 SM00387 Histidine kinase-like ATPases CH54_RS00515 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS00520 SM00448 cheY-homologous receiver domain CH54_RS00520 SM00862 Transcriptional regulatory protein, C terminal CH54_RS00555 SM01329 CH54_RS00555 CH54_RS00570 SM00354 helix_turn _helix lactose operon repressor CH54_RS00580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_RS00585 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_RS00590 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS00630 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_RS00630 SM00091 PAS domain CH54_RS00630 SM00267 diguanylate cyclase CH54_RS00635 SM00090 RIO-like kinase CH54_RS00640 SM00382 ATPases associated with a variety of cellular activities CH54_RS00665 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS00715 SM00357 Cold shock protein domain CH54_RS00740 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_RS00740 SM00091 PAS domain CH54_RS00740 SM00267 diguanylate cyclase CH54_RS00775 SM01091 Transporter associated domain CH54_RS00805 SM00487 DEAD-like helicases superfamily CH54_RS00805 SM00490 helicase superfamily c-terminal domain CH54_RS00815 SM01022 CH54_RS00815 CH54_RS00830 SM00479 CH54_RS00830 CH54_RS00885 SM00363 S4 RNA-binding domain CH54_RS00935 SM01022 CH54_RS00935 CH54_RS00945 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_RS00945 SM00091 PAS domain CH54_RS00945 SM00267 diguanylate cyclase CH54_RS00950 SM00972 Spore Coat Protein U domain CH54_RS00965 SM00972 Spore Coat Protein U domain CH54_RS00970 SM00972 Spore Coat Protein U domain CH54_RS00975 SM00972 Spore Coat Protein U domain CH54_RS01005 SM00945 ProQ/FINO family CH54_RS01010 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH54_RS01010 SM00245 tail specific protease CH54_RS01035 SM00346 helix_turn_helix isocitrate lyase regulation CH54_RS01040 SM00644 CH54_RS01040 CH54_RS01065 SM00382 ATPases associated with a variety of cellular activities CH54_RS01125 SM00382 ATPases associated with a variety of cellular activities CH54_RS01180 SM00869 Autotransporter beta-domain CH54_RS01190 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH54_RS01215 SM00873 B3/4 domain CH54_RS01215 SM00874 tRNA synthetase B5 domain CH54_RS01215 SM00896 Ferredoxin-fold anticodon binding domain CH54_RS01220 SM00411 bacterial (prokaryotic) histone like domain CH54_RS01245 SM00382 ATPases associated with a variety of cellular activities CH54_RS01360 SM00382 ATPases associated with a variety of cellular activities CH54_RS01435 SM00354 helix_turn _helix lactose operon repressor CH54_RS01455 SM00479 CH54_RS01455 CH54_RS01505 SM00347 helix_turn_helix multiple antibiotic resistance protein CH54_RS01530 SM00363 S4 RNA-binding domain CH54_RS01580 SM00382 ATPases associated with a variety of cellular activities CH54_RS01585 SM00382 ATPases associated with a variety of cellular activities CH54_RS01615 SM00382 ATPases associated with a variety of cellular activities CH54_RS01650 SM00953 CH54_RS01650 CH54_RS01660 SM00091 PAS domain CH54_RS01660 SM00382 ATPases associated with a variety of cellular activities CH54_RS01670 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH54_RS01705 SM00148 Phospholipase C, catalytic domain (part); domain X CH54_RS01710 SM00890 Domain of unknown function CH54_RS01755 SM00382 ATPases associated with a variety of cellular activities CH54_RS01755 SM00487 DEAD-like helicases superfamily CH54_RS01755 SM00490 helicase superfamily c-terminal domain CH54_RS01755 SM00847 Helicase associated domain (HA2) Add an annotation CH54_RS01765 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS01770 SM00020 Trypsin-like serine protease CH54_RS01790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS01790 SM00387 Histidine kinase-like ATPases CH54_RS01790 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS01795 SM00448 cheY-homologous receiver domain CH54_RS01795 SM00862 Transcriptional regulatory protein, C terminal CH54_RS01820 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH54_RS01820 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH54_RS01835 SM00100 Cyclic nucleotide-monophosphate binding domain CH54_RS01835 SM00419 helix_turn_helix, cAMP Regulatory protein CH54_RS01855 SM00871 Bacterial transcription activator, effector binding domain CH54_RS01865 SM00822 CH54_RS01865 CH54_RS01870 SM00098 Alkaline phosphatase homologues CH54_RS01900 SM00644 CH54_RS01900 CH54_RS01930 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS01945 SM00344 helix_turn_helix ASNC type CH54_RS01960 SM00849 Metallo-beta-lactamase superfamily CH54_RS01965 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH54_RS01965 SM00382 ATPases associated with a variety of cellular activities CH54_RS02020 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH54_RS02120 SM00421 helix_turn_helix, Lux Regulon CH54_RS02150 SM00354 helix_turn _helix lactose operon repressor CH54_RS02185 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS02220 SM00382 ATPases associated with a variety of cellular activities CH54_RS02230 SM00382 ATPases associated with a variety of cellular activities CH54_RS02260 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS02270 SM00900 CH54_RS02270 CH54_RS02280 SM00478 endonuclease III CH54_RS02280 SM00525 CH54_RS02280 CH54_RS02305 SM00357 Cold shock protein domain CH54_RS02305 SM00955 CH54_RS02305 CH54_RS02325 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_RS02325 SM01134 CH54_RS02325 CH54_RS02335 SM01007 Class II Aldolase and Adducin N-terminal domain CH54_RS02350 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH54_RS02365 SM00028 Tetratricopeptide repeats CH54_RS02375 SM00014 Acid phosphatase homologues CH54_RS02405 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH54_RS02405 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH54_RS02405 SM00493 CH54_RS02405 CH54_RS02420 SM00822 CH54_RS02420 CH54_RS02435 SM00363 S4 RNA-binding domain CH54_RS02470 SM00857 Resolvase, N terminal domain CH54_RS02490 SM00421 helix_turn_helix, Lux Regulon CH54_RS02510 SM00634 Bacterial Ig-like domain (group 1) CH54_RS02520 SM00421 helix_turn_helix, Lux Regulon CH54_RS02525 SM00869 Autotransporter beta-domain CH54_RS02535 SM00481 DNA polymerase alpha chain like domain CH54_RS02570 SM00749 bacterial OsmY and nodulation domain CH54_RS02620 SM00052 Putative diguanylate phosphodiesterase CH54_RS02625 SM00155 Phospholipase D. Active site motifs. CH54_RS02635 SM00382 ATPases associated with a variety of cellular activities CH54_RS02640 SM00382 ATPases associated with a variety of cellular activities CH54_RS02695 SM00528 Domain in histone-like proteins of HNS family CH54_RS02700 SM00984 UDP binding domain CH54_RS02705 SM00448 cheY-homologous receiver domain CH54_RS02760 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH54_RS02760 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH54_RS02760 SM00493 CH54_RS02760 CH54_RS02780 SM00870 CH54_RS02780 CH54_RS02800 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_RS02815 SM00763 PrkA AAA domain CH54_RS02840 SM00052 Putative diguanylate phosphodiesterase CH54_RS02840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH54_RS02840 SM00091 PAS domain CH54_RS02840 SM00267 diguanylate cyclase CH54_RS02850 SM01005 Alanine racemase, C-terminal domain CH54_RS02865 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS02930 SM00341 Helicase and RNase D C-terminal CH54_RS02930 SM00474 3'-5' exonuclease CH54_RS02950 SM00487 DEAD-like helicases superfamily CH54_RS02950 SM00491 CH54_RS02950 CH54_RS02995 SM00257 Lysin motif CH54_RS03005 SM00382 ATPases associated with a variety of cellular activities CH54_RS03020 SM00382 ATPases associated with a variety of cellular activities CH54_RS03025 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH54_RS03085 SM00836 DALR anticodon binding domain CH54_RS03085 SM01016 Arginyl tRNA synthetase N terminal dom CH54_RS03125 SM00481 DNA polymerase alpha chain like domain CH54_RS03180 SM00937 CH54_RS03180 CH54_RS03200 SM01400 CH54_RS03200 CH54_RS03230 SM00257 Lysin motif CH54_RS03250 SM00382 ATPases associated with a variety of cellular activities CH54_RS03270 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS03270 SM00866 CH54_RS03270 CH54_RS03315 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS03330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS03330 SM00387 Histidine kinase-like ATPases CH54_RS03420 SM00382 ATPases associated with a variety of cellular activities CH54_RS03475 SM01007 Class II Aldolase and Adducin N-terminal domain CH54_RS03485 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_RS03485 SM01134 CH54_RS03485 CH54_RS03490 SM00387 Histidine kinase-like ATPases CH54_RS03495 SM00448 cheY-homologous receiver domain CH54_RS03545 SM00465 GIY-YIG type nucleases (URI domain) CH54_RS03550 SM00421 helix_turn_helix, Lux Regulon CH54_RS03550 SM00448 cheY-homologous receiver domain CH54_RS03570 SM00642 Alpha-amylase domain CH54_RS03625 SM00612 CH54_RS03625 CH54_RS03630 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS03640 SM00421 helix_turn_helix, Lux Regulon CH54_RS03695 SM00382 ATPases associated with a variety of cellular activities CH54_RS03705 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS03705 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH54_RS03745 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS03750 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_RS03755 SM00478 endonuclease III CH54_RS03785 SM00382 ATPases associated with a variety of cellular activities CH54_RS03845 SM00047 Lysozyme subfamily 2 CH54_RS03890 SM00858 CH54_RS03890 CH54_RS03930 SM00448 cheY-homologous receiver domain CH54_RS03935 SM00448 cheY-homologous receiver domain CH54_RS03940 SM00138 Methyltransferase, chemotaxis proteins CH54_RS03945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_RS03945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS03945 SM00319 Homologues of the ligand binding domain of Tar CH54_RS03950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_RS03950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS03950 SM00319 Homologues of the ligand binding domain of Tar CH54_RS03955 SM00260 Two component signalling adaptor domain CH54_RS03960 SM00073 Histidine Phosphotransfer domain CH54_RS03960 SM00260 Two component signalling adaptor domain CH54_RS03960 SM00387 Histidine kinase-like ATPases CH54_RS03960 SM01231 CH54_RS03960 CH54_RS03990 SM00831 Cation transporter/ATPase, N-terminus CH54_RS04000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_RS04000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS04010 SM00357 Cold shock protein domain CH54_RS04015 SM00354 helix_turn _helix lactose operon repressor CH54_RS04020 SM01038 Beta galactosidase small chain CH54_RS04025 SM00829 Enoylreductase CH54_RS04040 SM00344 helix_turn_helix ASNC type CH54_RS04070 SM00195 Dual specificity phosphatase, catalytic domain CH54_RS04080 SM00563 Phosphate acyltransferases CH54_RS04200 SM00764 Citrate lyase ligase C-terminal domain CH54_RS04205 SM00091 PAS domain CH54_RS04205 SM00387 Histidine kinase-like ATPases CH54_RS04210 SM00448 cheY-homologous receiver domain CH54_RS04215 SM00421 helix_turn_helix, Lux Regulon CH54_RS04215 SM00448 cheY-homologous receiver domain CH54_RS04220 SM00387 Histidine kinase-like ATPases CH54_RS04240 SM00382 ATPases associated with a variety of cellular activities CH54_RS04255 SM00382 ATPases associated with a variety of cellular activities CH54_RS04260 SM00382 ATPases associated with a variety of cellular activities CH54_RS04265 SM00382 ATPases associated with a variety of cellular activities CH54_RS04290 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS04310 SM00824 Thioesterase CH54_RS04330 SM00823 Phosphopantetheine attachment site CH54_RS04345 SM00829 Enoylreductase CH54_RS04360 SM00421 helix_turn_helix, Lux Regulon CH54_RS04360 SM00448 cheY-homologous receiver domain CH54_RS04365 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS04365 SM00387 Histidine kinase-like ATPases CH54_RS04365 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS04365 SM00448 cheY-homologous receiver domain CH54_RS04400 SM00260 Two component signalling adaptor domain CH54_RS04400 SM00448 cheY-homologous receiver domain CH54_RS04420 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_RS04420 SM01134 CH54_RS04420 CH54_RS04475 SM00855 Phosphoglycerate mutase family CH54_RS04495 SM00382 ATPases associated with a variety of cellular activities CH54_RS04575 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS04585 SM00877 CH54_RS04585 CH54_RS04590 SM00877 CH54_RS04590 CH54_RS04620 SM00877 CH54_RS04620 CH54_RS04625 SM00877 CH54_RS04625 CH54_RS04665 SM00877 CH54_RS04665 CH54_RS04670 SM00877 CH54_RS04670 CH54_RS04705 SM00382 ATPases associated with a variety of cellular activities CH54_RS04755 SM00382 ATPases associated with a variety of cellular activities CH54_RS04810 SM01350 CH54_RS04810 CH54_RS04825 SM01091 Transporter associated domain CH54_RS04895 SM00919 Malic enzyme, NAD binding domain CH54_RS04895 SM01274 CH54_RS04895 CH54_RS04975 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS04980 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH54_RS04980 SM00382 ATPases associated with a variety of cellular activities CH54_RS04995 SM00382 ATPases associated with a variety of cellular activities CH54_RS05005 SM00354 helix_turn _helix lactose operon repressor CH54_RS05030 SM00829 Enoylreductase CH54_RS05055 SM00382 ATPases associated with a variety of cellular activities CH54_RS05075 SM00852 Probable molybdopterin binding domain CH54_RS05085 SM00382 ATPases associated with a variety of cellular activities CH54_RS05110 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CH54_RS05135 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS05135 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH54_RS05145 SM00382 ATPases associated with a variety of cellular activities CH54_RS05150 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_RS05150 SM00091 PAS domain CH54_RS05150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_RS05180 SM00487 DEAD-like helicases superfamily CH54_RS05180 SM00488 CH54_RS05180 CH54_RS05180 SM00491 CH54_RS05180 CH54_RS05215 SM00382 ATPases associated with a variety of cellular activities CH54_RS05240 SM00450 Rhodanese Homology Domain CH54_RS05265 SM00382 ATPases associated with a variety of cellular activities CH54_RS05280 SM00507 HNH nucleases CH54_RS05285 SM01118 CH54_RS05285 CH54_RS05320 SM00487 DEAD-like helicases superfamily CH54_RS05320 SM00490 helicase superfamily c-terminal domain CH54_RS05335 SM00382 ATPases associated with a variety of cellular activities CH54_RS05370 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_RS05385 SM00487 DEAD-like helicases superfamily CH54_RS05385 SM00490 helicase superfamily c-terminal domain CH54_RS05390 SM00382 ATPases associated with a variety of cellular activities CH54_RS05410 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_RS05410 SM00876 Biotin and Thiamin Synthesis associated domain CH54_RS05430 SM00382 ATPases associated with a variety of cellular activities CH54_RS05455 SM00382 ATPases associated with a variety of cellular activities CH54_RS05490 SM00855 Phosphoglycerate mutase family CH54_RS05595 SM00881 CoA binding domain CH54_RS05610 SM00861 Transketolase, pyrimidine binding domain CH54_RS05660 SM00797 Allophanate hydrolase subunit 2 CH54_RS05665 SM00796 Allophanate hydrolase subunit 1 CH54_RS05715 SM00387 Histidine kinase-like ATPases CH54_RS05715 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS05720 SM00448 cheY-homologous receiver domain CH54_RS05720 SM00862 Transcriptional regulatory protein, C terminal CH54_RS05755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_RS05770 SM01081 Putative carbohydrate binding domain CH54_RS05855 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_RS05870 SM00116 Domain in cystathionine beta-synthase and other proteins. CH54_RS05870 SM01091 Transporter associated domain CH54_RS05885 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS05900 SM00382 ATPases associated with a variety of cellular activities CH54_RS05960 SM00936 Penicillin-binding protein 5, C-terminal domain CH54_RS05975 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_RS05985 SM00267 diguanylate cyclase CH54_RS05995 SM00357 Cold shock protein domain CH54_RS06005 SM00421 helix_turn_helix, Lux Regulon CH54_RS06030 SM00382 ATPases associated with a variety of cellular activities CH54_RS06035 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH54_RS06070 SM00354 helix_turn _helix lactose operon repressor CH54_RS06075 SM00867 YceI-like domain CH54_RS06095 SM00382 ATPases associated with a variety of cellular activities CH54_RS06140 SM00382 ATPases associated with a variety of cellular activities CH54_RS06155 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS06225 SM00387 Histidine kinase-like ATPases CH54_RS06230 SM00448 cheY-homologous receiver domain CH54_RS06230 SM00850 LytTr DNA-binding domain CH54_RS06335 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH54_RS06335 SM00292 breast cancer carboxy-terminal domain CH54_RS06335 SM00532 Ligase N family CH54_RS06340 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH54_RS06370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS06370 SM00387 Histidine kinase-like ATPases CH54_RS06370 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS06375 SM00448 cheY-homologous receiver domain CH54_RS06375 SM00862 Transcriptional regulatory protein, C terminal CH54_RS06385 SM00382 ATPases associated with a variety of cellular activities CH54_RS06430 SM01130 CH54_RS06430 CH54_RS06465 SM00919 Malic enzyme, NAD binding domain CH54_RS06465 SM01274 CH54_RS06465 CH54_RS06495 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS06510 SM00421 helix_turn_helix, Lux Regulon CH54_RS06510 SM00448 cheY-homologous receiver domain CH54_RS06525 SM00382 ATPases associated with a variety of cellular activities CH54_RS06605 SM01130 CH54_RS06605 CH54_RS06670 SM00382 ATPases associated with a variety of cellular activities CH54_RS06700 SM00924 MgtE intracellular N domain CH54_RS06705 SM00052 Putative diguanylate phosphodiesterase CH54_RS06705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_RS06705 SM00091 PAS domain CH54_RS06705 SM00267 diguanylate cyclase CH54_RS06735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS06735 SM00387 Histidine kinase-like ATPases CH54_RS06735 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS06740 SM00448 cheY-homologous receiver domain CH54_RS06740 SM00862 Transcriptional regulatory protein, C terminal CH54_RS06755 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH54_RS06785 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_RS06785 SM01134 CH54_RS06785 CH54_RS06790 SM00116 Domain in cystathionine beta-synthase and other proteins. CH54_RS07035 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS07100 SM00116 Domain in cystathionine beta-synthase and other proteins. CH54_RS07100 SM01240 CH54_RS07100 CH54_RS07125 SM00564 beta-propeller repeat CH54_RS07150 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS07155 SM00028 Tetratricopeptide repeats CH54_RS07165 SM00562 CH54_RS07165 CH54_RS07170 SM00247 Beta/gamma crystallins CH54_RS07180 SM01359 CH54_RS07180 CH54_RS07180 SM01360 CH54_RS07180 CH54_RS07215 SM00271 DnaJ molecular chaperone homology domain CH54_RS07290 SM00938 Nitrogen regulatory protein P-II CH54_RS07300 SM00382 ATPases associated with a variety of cellular activities CH54_RS07300 SM00448 cheY-homologous receiver domain CH54_RS07310 SM00387 Histidine kinase-like ATPases CH54_RS07310 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS07315 SM01211 CH54_RS07315 CH54_RS07320 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS07350 SM00421 helix_turn_helix, Lux Regulon CH54_RS07390 SM00358 Double-stranded RNA binding motif CH54_RS07390 SM00535 Ribonuclease III family CH54_RS07400 SM00838 Elongation factor G C-terminus CH54_RS07440 SM00487 DEAD-like helicases superfamily CH54_RS07440 SM00490 helicase superfamily c-terminal domain CH54_RS07450 SM00986 Uracil DNA glycosylase superfamily CH54_RS07450 SM00987 UreE urease accessory protein, C-terminal domain CH54_RS07500 SM00953 CH54_RS07500 CH54_RS07580 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS07660 SM00988 UreE urease accessory protein, N-terminal domain CH54_RS07685 SM00382 ATPases associated with a variety of cellular activities CH54_RS07690 SM00382 ATPases associated with a variety of cellular activities CH54_RS07715 SM00450 Rhodanese Homology Domain CH54_RS07720 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS07725 SM00357 Cold shock protein domain CH54_RS07765 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS07795 SM00382 ATPases associated with a variety of cellular activities CH54_RS07815 SM00479 CH54_RS07815 CH54_RS07830 SM00849 Metallo-beta-lactamase superfamily CH54_RS07835 SM00257 Lysin motif CH54_RS07890 SM00382 ATPases associated with a variety of cellular activities CH54_RS07890 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_RS07900 SM00363 S4 RNA-binding domain CH54_RS07915 SM00830 Chorismate mutase type II CH54_RS07920 SM00830 Chorismate mutase type II CH54_RS07930 SM00448 cheY-homologous receiver domain CH54_RS07930 SM00850 LytTr DNA-binding domain CH54_RS07965 SM00382 ATPases associated with a variety of cellular activities CH54_RS07965 SM00962 SRP54-type protein, GTPase domain CH54_RS07965 SM00963 SRP54-type protein, helical bundle domain CH54_RS07975 SM01091 Transporter associated domain CH54_RS08025 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH54_RS08035 SM00382 ATPases associated with a variety of cellular activities CH54_RS08065 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS08095 SM00382 ATPases associated with a variety of cellular activities CH54_RS08110 SM01012 CH54_RS08110 CH54_RS08155 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH54_RS08160 SM00838 Elongation factor G C-terminus CH54_RS08160 SM00889 Elongation factor G, domain IV CH54_RS08170 SM01235 CH54_RS08170 CH54_RS08175 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS08180 SM00822 CH54_RS08180 CH54_RS08195 SM00825 Beta-ketoacyl synthase CH54_RS08205 SM00382 ATPases associated with a variety of cellular activities CH54_RS08215 SM00382 ATPases associated with a variety of cellular activities CH54_RS08285 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH54_RS08285 SM00534 ATPase domain of DNA mismatch repair MUTS family CH54_RS08295 SM00257 Lysin motif CH54_RS08330 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS08330 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH54_RS08340 SM00382 ATPases associated with a variety of cellular activities CH54_RS08420 SM01192 CH54_RS08420 CH54_RS08420 SM01193 CH54_RS08420 CH54_RS08435 SM00954 Region found in RelA / SpoT proteins CH54_RS08445 SM00073 Histidine Phosphotransfer domain CH54_RS08445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS08445 SM00387 Histidine kinase-like ATPases CH54_RS08445 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS08445 SM00448 cheY-homologous receiver domain CH54_RS08450 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH54_RS08455 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_RS08500 SM00382 ATPases associated with a variety of cellular activities CH54_RS08510 SM00487 DEAD-like helicases superfamily CH54_RS08510 SM00490 helicase superfamily c-terminal domain CH54_RS08510 SM00847 Helicase associated domain (HA2) Add an annotation CH54_RS08570 SM00382 ATPases associated with a variety of cellular activities CH54_RS08575 SM00947 Carbonic anhydrase CH54_RS08640 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS08665 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS08665 SM00895 CH54_RS08665 CH54_RS08680 SM00644 CH54_RS08680 CH54_RS08705 SM01240 CH54_RS08705 CH54_RS08730 SM00957 SecA DEAD-like domain CH54_RS08730 SM00958 SecA preprotein cross-linking domain CH54_RS08750 SM00864 Tubulin/FtsZ family, GTPase domain CH54_RS08750 SM00865 Tubulin/FtsZ family, C-terminal domain CH54_RS08755 SM00842 Cell division protein FtsA CH54_RS08830 SM00354 helix_turn _helix lactose operon repressor CH54_RS08855 SM00917 LeuA allosteric (dimerisation) domain CH54_RS08860 SM01329 CH54_RS08860 CH54_RS08910 SM00382 ATPases associated with a variety of cellular activities CH54_RS08920 SM00486 DNA polymerase type-B family CH54_RS08925 SM00487 DEAD-like helicases superfamily CH54_RS08925 SM00490 helicase superfamily c-terminal domain CH54_RS08935 SM00271 DnaJ molecular chaperone homology domain CH54_RS08955 SM00650 Ribosomal RNA adenine dimethylases CH54_RS09000 SM00851 MGS-like domain CH54_RS09000 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH54_RS09005 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH54_RS09035 SM00904 Riboflavin kinase CH54_RS09055 SM00271 DnaJ molecular chaperone homology domain CH54_RS09080 SM00852 Probable molybdopterin binding domain CH54_RS09115 SM00448 cheY-homologous receiver domain CH54_RS09115 SM00862 Transcriptional regulatory protein, C terminal CH54_RS09125 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS09125 SM00871 Bacterial transcription activator, effector binding domain CH54_RS09130 SM00855 Phosphoglycerate mutase family CH54_RS09150 SM00831 Cation transporter/ATPase, N-terminus CH54_RS09155 SM00382 ATPases associated with a variety of cellular activities CH54_RS09165 SM00829 Enoylreductase CH54_RS09170 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS09180 SM00382 ATPases associated with a variety of cellular activities CH54_RS09205 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH54_RS09210 SM01133 CH54_RS09210 CH54_RS09230 SM00749 bacterial OsmY and nodulation domain CH54_RS09280 SM00267 diguanylate cyclase CH54_RS09285 SM00091 PAS domain CH54_RS09325 SM01120 CH54_RS09325 CH54_RS09380 SM00382 ATPases associated with a variety of cellular activities CH54_RS09400 SM01133 CH54_RS09400 CH54_RS09430 SM00421 helix_turn_helix, Lux Regulon CH54_RS09450 SM00912 haemagglutination activity domain CH54_RS09465 SM00487 DEAD-like helicases superfamily CH54_RS09560 SM00382 ATPases associated with a variety of cellular activities CH54_RS09565 SM00382 ATPases associated with a variety of cellular activities CH54_RS09580 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS09580 SM00866 CH54_RS09580 CH54_RS09605 SM00382 ATPases associated with a variety of cellular activities CH54_RS09610 SM00382 ATPases associated with a variety of cellular activities CH54_RS09620 SM00072 Guanylate kinase homologues. CH54_RS09630 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH54_RS09645 SM00382 ATPases associated with a variety of cellular activities CH54_RS09715 SM00487 DEAD-like helicases superfamily CH54_RS09715 SM00490 helicase superfamily c-terminal domain CH54_RS09720 SM00028 Tetratricopeptide repeats CH54_RS09725 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_RS09725 SM00322 K homology RNA-binding domain CH54_RS09730 SM01387 CH54_RS09730 CH54_RS09745 SM00173 Ras subfamily of RAS small GTPases CH54_RS09750 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_RS09750 SM00322 K homology RNA-binding domain CH54_RS09785 SM00382 ATPases associated with a variety of cellular activities CH54_RS09795 SM01103 CH54_RS09795 CH54_RS09810 SM00448 cheY-homologous receiver domain CH54_RS09810 SM00862 Transcriptional regulatory protein, C terminal CH54_RS09815 SM00387 Histidine kinase-like ATPases CH54_RS09815 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS09885 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_RS09885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS09915 SM01091 Transporter associated domain CH54_RS10000 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH54_RS10005 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_RS10005 SM00357 Cold shock protein domain CH54_RS10005 SM00955 CH54_RS10005 CH54_RS10015 SM00788 Adenylosuccinate synthetase CH54_RS10025 SM00244 prohibitin homologues CH54_RS10030 SM00244 prohibitin homologues CH54_RS10050 SM00853 MutL C terminal dimerisation domain CH54_RS10050 SM01340 CH54_RS10050 CH54_RS10055 SM00257 Lysin motif CH54_RS10055 SM00646 CH54_RS10055 CH54_RS10095 SM00479 CH54_RS10095 CH54_RS10155 SM00841 Elongation factor P, C-terminal CH54_RS10155 SM01185 CH54_RS10155 CH54_RS10175 SM00883 Chaperonin 10 Kd subunit CH54_RS10205 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS10225 SM00858 CH54_RS10225 CH54_RS10305 SM00477 DNA/RNA non-specific endonuclease CH54_RS10305 SM00892 DNA/RNA non-specific endonuclease CH54_RS10335 SM00954 Region found in RelA / SpoT proteins CH54_RS10470 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS10655 SM00382 ATPases associated with a variety of cellular activities CH54_RS10660 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS10725 SM00382 ATPases associated with a variety of cellular activities CH54_RS10775 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS10840 SM00387 Histidine kinase-like ATPases CH54_RS10840 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS10840 SM00448 cheY-homologous receiver domain CH54_RS10845 SM00421 helix_turn_helix, Lux Regulon CH54_RS10845 SM00448 cheY-homologous receiver domain CH54_RS10955 SM00422 helix_turn_helix, mercury resistance CH54_RS10970 SM00662 RNA polymerases D CH54_RS10975 SM00363 S4 RNA-binding domain CH54_RS10975 SM01390 CH54_RS10975 CH54_RS11040 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH54_RS11045 SM01374 CH54_RS11045 CH54_RS11065 SM00322 K homology RNA-binding domain CH54_RS11080 SM01382 CH54_RS11080 CH54_RS11080 SM01383 CH54_RS11080 CH54_RS11100 SM01403 CH54_RS11100 CH54_RS11120 SM00838 Elongation factor G C-terminus CH54_RS11120 SM00889 Elongation factor G, domain IV CH54_RS11185 SM00382 ATPases associated with a variety of cellular activities CH54_RS11210 SM00382 ATPases associated with a variety of cellular activities CH54_RS11215 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS11250 SM00100 Cyclic nucleotide-monophosphate binding domain CH54_RS11250 SM00419 helix_turn_helix, cAMP Regulatory protein CH54_RS11275 SM00382 ATPases associated with a variety of cellular activities CH54_RS11290 SM00354 helix_turn _helix lactose operon repressor CH54_RS11360 SM00965 Secretin and TonB N terminus short domain CH54_RS11405 SM00363 S4 RNA-binding domain CH54_RS11420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS11420 SM00387 Histidine kinase-like ATPases CH54_RS11420 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS11425 SM00448 cheY-homologous receiver domain CH54_RS11425 SM00862 Transcriptional regulatory protein, C terminal CH54_RS11455 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_RS11455 SM00732 Likely ribonuclease with RNase H fold. CH54_RS11460 SM00899 CH54_RS11460 CH54_RS11505 SM00421 helix_turn_helix, Lux Regulon CH54_RS11510 SM00450 Rhodanese Homology Domain CH54_RS11520 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_RS11520 SM01134 CH54_RS11520 CH54_RS11550 SM00642 Alpha-amylase domain CH54_RS11555 SM00642 Alpha-amylase domain CH54_RS11565 SM00382 ATPases associated with a variety of cellular activities CH54_RS11600 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH54_RS11620 SM00354 helix_turn _helix lactose operon repressor CH54_RS11715 SM00862 Transcriptional regulatory protein, C terminal CH54_RS11745 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH54_RS11790 SM00052 Putative diguanylate phosphodiesterase CH54_RS11825 SM00052 Putative diguanylate phosphodiesterase CH54_RS11830 SM00028 Tetratricopeptide repeats CH54_RS11875 SM00382 ATPases associated with a variety of cellular activities CH54_RS11880 SM00382 ATPases associated with a variety of cellular activities CH54_RS11900 SM00912 haemagglutination activity domain CH54_RS11910 SM00912 haemagglutination activity domain CH54_RS11925 SM00387 Histidine kinase-like ATPases CH54_RS11930 SM00421 helix_turn_helix, Lux Regulon CH54_RS11930 SM00448 cheY-homologous receiver domain CH54_RS11970 SM00354 helix_turn _helix lactose operon repressor CH54_RS11990 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS11990 SM00387 Histidine kinase-like ATPases CH54_RS11990 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS11990 SM00448 cheY-homologous receiver domain CH54_RS11995 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS12005 SM00382 ATPases associated with a variety of cellular activities CH54_RS12035 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS12090 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS12105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_RS12105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS12105 SM01358 CH54_RS12105 CH54_RS12120 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS12195 SM00642 Alpha-amylase domain CH54_RS12250 SM00387 Histidine kinase-like ATPases CH54_RS12250 SM00433 TopoisomeraseII CH54_RS12260 SM00480 DNA polymerase III beta subunit CH54_RS12265 SM00382 ATPases associated with a variety of cellular activities CH54_RS12265 SM00760 Bacterial dnaA protein helix-turn-helix domain CH54_RS12300 SM00382 ATPases associated with a variety of cellular activities CH54_RS12300 SM00930 CH54_RS12300 CH54_RS12310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_RS12310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS12320 SM00387 Histidine kinase-like ATPases CH54_RS12320 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS12325 SM00421 helix_turn_helix, Lux Regulon CH54_RS12325 SM00448 cheY-homologous receiver domain CH54_RS12355 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS12370 SM00382 ATPases associated with a variety of cellular activities CH54_RS12410 SM00382 ATPases associated with a variety of cellular activities CH54_RS12455 SM01228 CH54_RS12455 CH54_RS12465 SM00344 helix_turn_helix ASNC type CH54_RS12480 SM00327 von Willebrand factor (vWF) type A domain CH54_RS12485 SM00382 ATPases associated with a variety of cellular activities CH54_RS12500 SM00382 ATPases associated with a variety of cellular activities CH54_RS12520 SM00354 helix_turn _helix lactose operon repressor CH54_RS12530 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS12530 SM00895 CH54_RS12530 CH54_RS12580 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH54_RS12580 SM00474 3'-5' exonuclease CH54_RS12580 SM00475 5'-3' exonuclease CH54_RS12580 SM00482 DNA polymerase A domain CH54_RS12595 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_RS12600 SM00382 ATPases associated with a variety of cellular activities CH54_RS12600 SM00448 cheY-homologous receiver domain CH54_RS12605 SM00091 PAS domain CH54_RS12605 SM00387 Histidine kinase-like ATPases CH54_RS12605 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS12610 SM01230 CH54_RS12610 CH54_RS12645 SM00421 helix_turn_helix, Lux Regulon CH54_RS12650 SM00421 helix_turn_helix, Lux Regulon CH54_RS12670 SM00487 DEAD-like helicases superfamily CH54_RS12670 SM00490 helicase superfamily c-terminal domain CH54_RS12680 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_RS12680 SM00954 Region found in RelA / SpoT proteins CH54_RS12685 SM01409 CH54_RS12685 CH54_RS12690 SM00072 Guanylate kinase homologues. CH54_RS12695 SM00532 Ligase N family CH54_RS12715 SM00052 Putative diguanylate phosphodiesterase CH54_RS12715 SM00091 PAS domain CH54_RS12715 SM00267 diguanylate cyclase CH54_RS12725 SM00849 Metallo-beta-lactamase superfamily CH54_RS12935 SM00479 CH54_RS12935 CH54_RS13015 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH54_RS13015 SM01232 CH54_RS13015 CH54_RS13055 SM00829 Enoylreductase CH54_RS13080 SM00450 Rhodanese Homology Domain CH54_RS13100 SM00971 Serine acetyltransferase, N-terminal CH54_RS13110 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS13115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS13115 SM00387 Histidine kinase-like ATPases CH54_RS13115 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS13120 SM00448 cheY-homologous receiver domain CH54_RS13120 SM00862 Transcriptional regulatory protein, C terminal CH54_RS13205 SM00382 ATPases associated with a variety of cellular activities CH54_RS13205 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_RS13220 SM00354 helix_turn _helix lactose operon repressor CH54_RS13225 SM00487 DEAD-like helicases superfamily CH54_RS13225 SM00490 helicase superfamily c-terminal domain CH54_RS13265 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH54_RS13305 SM00382 ATPases associated with a variety of cellular activities CH54_RS13410 SM00382 ATPases associated with a variety of cellular activities CH54_RS13450 SM00507 HNH nucleases CH54_RS13515 SM00487 DEAD-like helicases superfamily CH54_RS13515 SM00490 helicase superfamily c-terminal domain CH54_RS13525 SM00357 Cold shock protein domain CH54_RS13525 SM00382 ATPases associated with a variety of cellular activities CH54_RS13525 SM00959 Rho termination factor, N-terminal domain CH54_RS13550 SM00984 UDP binding domain CH54_RS13645 SM01219 CH54_RS13645 CH54_RS13720 SM00341 Helicase and RNase D C-terminal CH54_RS13720 SM00487 DEAD-like helicases superfamily CH54_RS13720 SM00490 helicase superfamily c-terminal domain CH54_RS13720 SM00956 CH54_RS13720 CH54_RS13815 SM00382 ATPases associated with a variety of cellular activities CH54_RS13815 SM00962 SRP54-type protein, GTPase domain CH54_RS13815 SM00963 SRP54-type protein, helical bundle domain CH54_RS13820 SM00382 ATPases associated with a variety of cellular activities CH54_RS13865 SM00382 ATPases associated with a variety of cellular activities CH54_RS13870 SM00382 ATPases associated with a variety of cellular activities CH54_RS13920 SM00382 ATPases associated with a variety of cellular activities CH54_RS14015 SM01004 Delta-aminolevulinic acid dehydratase CH54_RS14020 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH54_RS14140 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH54_RS14140 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH54_RS14145 SM00649 Ribosomal protein L11/L12 CH54_RS14170 SM00663 RNA polymerase I subunit A N-terminus CH54_RS14175 SM00876 Biotin and Thiamin Synthesis associated domain CH54_RS14230 SM00411 bacterial (prokaryotic) histone like domain CH54_RS14240 SM01209 CH54_RS14240 CH54_RS14240 SM01210 CH54_RS14240 CH54_RS14245 SM00798 AICARFT/IMPCHase bienzyme CH54_RS14245 SM00851 MGS-like domain CH54_RS14300 SM00346 helix_turn_helix isocitrate lyase regulation CH54_RS14305 SM01018 B12 binding domain CH54_RS14310 SM00912 haemagglutination activity domain CH54_RS14355 SM00382 ATPases associated with a variety of cellular activities CH54_RS14385 SM00563 Phosphate acyltransferases CH54_RS14425 SM00829 Enoylreductase CH54_RS14430 SM00382 ATPases associated with a variety of cellular activities CH54_RS14435 SM01005 Alanine racemase, C-terminal domain CH54_RS14465 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS14520 SM00357 Cold shock protein domain CH54_RS14525 SM00357 Cold shock protein domain CH54_RS14535 SM00267 diguanylate cyclase CH54_RS14565 SM00878 Biotin carboxylase C-terminal domain CH54_RS14590 SM00829 Enoylreductase CH54_RS14595 SM00052 Putative diguanylate phosphodiesterase CH54_RS14595 SM00267 diguanylate cyclase CH54_RS14620 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_RS14745 SM00831 Cation transporter/ATPase, N-terminus CH54_RS14750 SM00354 helix_turn _helix lactose operon repressor CH54_RS14760 SM00642 Alpha-amylase domain CH54_RS14805 SM00382 ATPases associated with a variety of cellular activities CH54_RS14835 SM00382 ATPases associated with a variety of cellular activities CH54_RS14870 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH54_RS14875 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH54_RS14925 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_RS14930 SM00073 Histidine Phosphotransfer domain CH54_RS14930 SM00091 PAS domain CH54_RS14930 SM00387 Histidine kinase-like ATPases CH54_RS14930 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS14930 SM00448 cheY-homologous receiver domain CH54_RS14945 SM00749 bacterial OsmY and nodulation domain CH54_RS14995 SM00857 Resolvase, N terminal domain CH54_RS15015 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS15035 SM00347 helix_turn_helix multiple antibiotic resistance protein CH54_RS15055 SM00822 CH54_RS15055 CH54_RS15060 SM00829 Enoylreductase CH54_RS15120 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS15120 SM00895 CH54_RS15120 CH54_RS15140 SM00858 CH54_RS15140 CH54_RS15170 SM00869 Autotransporter beta-domain CH54_RS15250 SM00400 zinc finger CH54_RS15250 SM00493 CH54_RS15250 CH54_RS15250 SM00766 DNA primase DnaG DnaB-binding CH54_RS15265 SM01207 CH54_RS15265 CH54_RS15270 SM00905 Dihydroneopterin aldolase CH54_RS15280 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_RS15285 SM00287 Bacterial SH3 domain homologues CH54_RS15290 SM01118 CH54_RS15290 CH54_RS15360 SM00387 Histidine kinase-like ATPases CH54_RS15360 SM00433 TopoisomeraseII CH54_RS15380 SM00434 DNA Topoisomerase IV CH54_RS15385 SM00563 Phosphate acyltransferases CH54_RS15395 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_RS15410 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS15500 SM00862 Transcriptional regulatory protein, C terminal CH54_RS15545 SM00923 MbtH-like protein CH54_RS15550 SM00823 Phosphopantetheine attachment site CH54_RS15550 SM00824 Thioesterase CH54_RS15570 SM00382 ATPases associated with a variety of cellular activities CH54_RS15650 SM00382 ATPases associated with a variety of cellular activities CH54_RS15675 SM00382 ATPases associated with a variety of cellular activities CH54_RS15695 SM00858 CH54_RS15695 CH54_RS15765 SM00862 Transcriptional regulatory protein, C terminal CH54_RS15885 SM00052 Putative diguanylate phosphodiesterase CH54_RS15885 SM00091 PAS domain CH54_RS15885 SM00267 diguanylate cyclase CH54_RS15905 SM00710 Parallel beta-helix repeats CH54_RS15905 SM00869 Autotransporter beta-domain CH54_RS15965 SM00382 ATPases associated with a variety of cellular activities CH54_RS16040 SM00382 ATPases associated with a variety of cellular activities CH54_RS16040 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_RS16205 SM00382 ATPases associated with a variety of cellular activities CH54_RS16235 SM00354 helix_turn _helix lactose operon repressor CH54_RS16255 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS16335 SM00382 ATPases associated with a variety of cellular activities CH54_RS16335 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_RS16525 SM00478 endonuclease III CH54_RS16525 SM00525 CH54_RS16525 CH54_RS16550 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_RS16560 SM01152 CH54_RS16560 CH54_RS16595 SM00732 Likely ribonuclease with RNase H fold. CH54_RS16620 SM00731 SprT homologues. CH54_RS16625 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH54_RS16670 SM00861 Transketolase, pyrimidine binding domain CH54_RS16675 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_RS16740 SM01011 Aminopeptidase P, N-terminal domain CH54_RS16770 SM00822 CH54_RS16770 CH54_RS16800 SM00448 cheY-homologous receiver domain CH54_RS16800 SM00862 Transcriptional regulatory protein, C terminal CH54_RS16805 SM00387 Histidine kinase-like ATPases CH54_RS16805 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS16835 SM00937 CH54_RS16835 CH54_RS16850 SM00857 Resolvase, N terminal domain CH54_RS16890 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS16910 SM00778 Zinc-binding domain of primase-helicase CH54_RS16910 SM00885 D5 N terminal like CH54_RS16945 SM00344 helix_turn_helix ASNC type CH54_RS16965 SM00354 helix_turn _helix lactose operon repressor CH54_RS16970 SM00271 DnaJ molecular chaperone homology domain CH54_RS16980 SM00822 CH54_RS16980 CH54_RS16990 SM00947 Carbonic anhydrase CH54_RS17010 SM00382 ATPases associated with a variety of cellular activities CH54_RS17060 SM00862 Transcriptional regulatory protein, C terminal CH54_RS17080 SM00849 Metallo-beta-lactamase superfamily CH54_RS17105 SM00354 helix_turn _helix lactose operon repressor CH54_RS17115 SM00563 Phosphate acyltransferases CH54_RS17135 SM00927 DNA mismatch repair enzyme MutH CH54_RS17150 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH54_RS17200 SM00382 ATPases associated with a variety of cellular activities CH54_RS17210 SM00646 CH54_RS17210 CH54_RS17230 SM00925 MltA specific insert domain CH54_RS17270 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH54_RS17270 SM00475 5'-3' exonuclease CH54_RS17315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_RS17360 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH54_RS17370 SM00935 Outer membrane protein (OmpH-like) CH54_RS17400 SM00481 DNA polymerase alpha chain like domain CH54_RS17425 SM00977 TilS substrate C-terminal domain CH54_RS17445 SM01322 CH54_RS17445 CH54_RS17485 SM00382 ATPases associated with a variety of cellular activities CH54_RS17485 SM00930 CH54_RS17485 CH54_RS17525 SM00155 Phospholipase D. Active site motifs. CH54_RS17530 SM00881 CoA binding domain CH54_RS17535 SM01144 CH54_RS17535 CH54_RS17545 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH54_RS17560 SM00347 helix_turn_helix multiple antibiotic resistance protein CH54_RS17590 SM01007 Class II Aldolase and Adducin N-terminal domain CH54_RS17645 SM00900 CH54_RS17645 CH54_RS17795 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH54_RS17820 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS17820 SM00866 CH54_RS17820 CH54_RS17840 SM01068 Putative carbohydrate binding domain CH54_RS17905 SM00448 cheY-homologous receiver domain CH54_RS17905 SM00862 Transcriptional regulatory protein, C terminal CH54_RS17910 SM00091 PAS domain CH54_RS17910 SM00387 Histidine kinase-like ATPases CH54_RS17910 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS17930 SM00642 Alpha-amylase domain CH54_RS17960 SM00869 Autotransporter beta-domain CH54_RS17985 SM01323 CH54_RS17985 CH54_RS18035 SM00861 Transketolase, pyrimidine binding domain CH54_RS18050 SM00981 CH54_RS18050 CH54_RS18130 SM00382 ATPases associated with a variety of cellular activities CH54_RS18130 SM00994 ClpX C4-type zinc finger CH54_RS18130 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_RS18135 SM00382 ATPases associated with a variety of cellular activities CH54_RS18135 SM00464 Found in ATP-dependent protease La (LON) CH54_RS18140 SM00411 bacterial (prokaryotic) histone like domain CH54_RS18150 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH54_RS18180 SM00344 helix_turn_helix ASNC type CH54_RS18185 SM00382 ATPases associated with a variety of cellular activities CH54_RS18190 SM00382 ATPases associated with a variety of cellular activities CH54_RS18195 SM00938 Nitrogen regulatory protein P-II CH54_RS18235 SM00382 ATPases associated with a variety of cellular activities CH54_RS18330 SM00382 ATPases associated with a variety of cellular activities CH54_RS18340 SM00493 CH54_RS18340 CH54_RS18345 SM00387 Histidine kinase-like ATPases CH54_RS18440 SM00422 helix_turn_helix, mercury resistance CH54_RS18450 SM00244 prohibitin homologues CH54_RS18460 SM00822 CH54_RS18460 CH54_RS18470 SM00382 ATPases associated with a variety of cellular activities CH54_RS18485 SM01001 AIR carboxylase CH54_RS18500 SM00840 CH54_RS18500 CH54_RS18630 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS18655 SM00382 ATPases associated with a variety of cellular activities CH54_RS18805 SM00635 Bacterial Ig-like domain 2 CH54_RS18900 SM00382 ATPases associated with a variety of cellular activities CH54_RS18975 SM00463 Small MutS-related domain CH54_RS19015 SM00825 Beta-ketoacyl synthase CH54_RS19020 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_RS19020 SM00091 PAS domain CH54_RS19020 SM00267 diguanylate cyclase CH54_RS19055 SM00354 helix_turn _helix lactose operon repressor CH54_RS19095 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS19110 SM00342 helix_turn_helix, arabinose operon control protein CH54_RS19120 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH54_RS19165 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS19180 SM00382 ATPases associated with a variety of cellular activities CH54_RS19190 SM00052 Putative diguanylate phosphodiesterase CH54_RS19220 SM00354 helix_turn _helix lactose operon repressor CH54_RS19260 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_RS19295 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH54_RS19300 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_RS19300 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH54_RS19365 SM00354 helix_turn _helix lactose operon repressor CH54_RS19395 SM00869 Autotransporter beta-domain CH54_RS19420 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH54_RS19430 SM01060 CH54_RS19430 CH54_RS19445 SM00852 Probable molybdopterin binding domain CH54_RS19475 SM00434 DNA Topoisomerase IV CH54_RS19480 SM00387 Histidine kinase-like ATPases CH54_RS19480 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS19480 SM00448 cheY-homologous receiver domain CH54_RS19485 SM00421 helix_turn_helix, Lux Regulon CH54_RS19485 SM00448 cheY-homologous receiver domain CH54_RS19490 SM00387 Histidine kinase-like ATPases CH54_RS19490 SM00388 His Kinase A (phosphoacceptor) domain CH54_RS19500 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CH54_RS19510 SM00382 ATPases associated with a variety of cellular activities CH54_RS19550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_RS19550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_RS19610 SM00487 DEAD-like helicases superfamily CH54_RS19610 SM00490 helicase superfamily c-terminal domain CH54_RS19615 SM00363 S4 RNA-binding domain CH54_RS19635 SM00382 ATPases associated with a variety of cellular activities CH54_RS19655 SM00052 Putative diguanylate phosphodiesterase CH54_RS19680 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH54_RS19690 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_RS19690 SM00895 CH54_RS19690 CH54_RS19705 SM00841 Elongation factor P, C-terminal CH54_RS19705 SM01185 CH54_RS19705 CH54_RS19745 SM00518 AP endonuclease family 2 CH54_RS19805 SM00382 ATPases associated with a variety of cellular activities CH54_RS19805 SM00930 CH54_RS19805 CH54_RS19820 SM00530 Helix-turn-helix XRE-family like proteins CH54_RS19830 SM00116 Domain in cystathionine beta-synthase and other proteins. CH54_RS19835 SM00936 Penicillin-binding protein 5, C-terminal domain CH54_RS19850 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_RS19850 SM01134 CH54_RS19850 CH54_RS19855 SM01133 CH54_RS19855 CH54_RS19860 SM00014 Acid phosphatase homologues CH54_RS19895 SM00382 ATPases associated with a variety of cellular activities CH54_RS19920 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS19920 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH54_RS19935 SM00062 Bacterial periplasmic substrate-binding proteins CH54_RS19935 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH54_RS19940 SM00382 ATPases associated with a variety of cellular activities CH54_RS20005 SM00382 ATPases associated with a variety of cellular activities CH54_RS20010 SM00357 Cold shock protein domain CH54_RS20020 SM00382 ATPases associated with a variety of cellular activities CH54_RS20020 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_RS20025 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_RS20035 SM00382 ATPases associated with a variety of cellular activities CH54_RS20040 SM00382 ATPases associated with a variety of cellular activities CH54_RS20050 SM00344 helix_turn_helix ASNC type CH54_RS20055 SM00843 CH54_RS20055 CH54_RS20065 SM00382 ATPases associated with a variety of cellular activities CH54_RS20100 SM00870 CH54_RS20100 CH54_RS20125 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_RS20130 SM00411 bacterial (prokaryotic) histone like domain CH54_RS20135 SM00849 Metallo-beta-lactamase superfamily CH54_RS20140 SM00382 ATPases associated with a variety of cellular activities CH54_RS20150 SM01150 CH54_RS20150 CH54_RS20155 SM00357 Cold shock protein domain CH54_RS20210 SM00849 Metallo-beta-lactamase superfamily CH54_RS20215 SM00052 Putative diguanylate phosphodiesterase CH54_RS20285 SM00507 HNH nucleases CH54_RS20290 SM00869 Autotransporter beta-domain