CH57_RS00060	SM00382	ATPases associated with a variety of cellular activities
CH57_RS00095	SM00382	ATPases associated with a variety of cellular activities
CH57_RS00110	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CH57_RS00110	SM00866	CH57_RS00110
CH57_RS00190	SM00671	Sel1-like repeats.
CH57_RS00195	SM00671	Sel1-like repeats.
CH57_RS00250	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS00250	SM00387	Histidine kinase-like ATPases
CH57_RS00250	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS00255	SM00448	cheY-homologous receiver domain
CH57_RS00255	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS00290	SM00450	Rhodanese Homology Domain
CH57_RS00325	SM01400	CH57_RS00325
CH57_RS00350	SM00937	CH57_RS00350
CH57_RS00375	SM01321	CH57_RS00375
CH57_RS00385	SM00382	ATPases associated with a variety of cellular activities
CH57_RS00435	SM01321	CH57_RS00435
CH57_RS00460	SM00481	DNA polymerase alpha chain like domain
CH57_RS00500	SM00912	haemagglutination activity domain
CH57_RS00505	SM00836	DALR anticodon binding domain
CH57_RS00505	SM01016	Arginyl tRNA synthetase N terminal dom
CH57_RS00560	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CH57_RS00565	SM00382	ATPases associated with a variety of cellular activities
CH57_RS00575	SM00382	ATPases associated with a variety of cellular activities
CH57_RS00585	SM00257	Lysin motif
CH57_RS00630	SM00487	DEAD-like helicases superfamily
CH57_RS00630	SM00491	CH57_RS00630
CH57_RS00650	SM00341	Helicase and RNase D C-terminal
CH57_RS00650	SM00474	3'-5' exonuclease
CH57_RS00700	SM00382	ATPases associated with a variety of cellular activities
CH57_RS00735	SM01040	BRO family, N-terminal domain
CH57_RS00820	SM00635	Bacterial Ig-like domain 2
CH57_RS00850	SM00635	Bacterial Ig-like domain 2
CH57_RS00880	SM01321	CH57_RS00880
CH57_RS00890	SM00232	JAB/MPN domain
CH57_RS00910	SM01040	BRO family, N-terminal domain
CH57_RS00940	SM00060	Fibronectin type 3 domain
CH57_RS01000	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CH57_RS01040	SM00763	PrkA AAA domain
CH57_RS01055	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CH57_RS01075	SM00870	CH57_RS01075
CH57_RS01095	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CH57_RS01095	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CH57_RS01095	SM00493	CH57_RS01095
CH57_RS01140	SM00448	cheY-homologous receiver domain
CH57_RS01145	SM00984	UDP binding domain
CH57_RS01150	SM00528	Domain in histone-like proteins of HNS family
CH57_RS01160	SM00382	ATPases associated with a variety of cellular activities
CH57_RS01195	SM00382	ATPases associated with a variety of cellular activities
CH57_RS01200	SM00382	ATPases associated with a variety of cellular activities
CH57_RS01220	SM00155	Phospholipase D. Active site motifs.
CH57_RS01290	SM00749	bacterial OsmY and nodulation domain
CH57_RS01335	SM00481	DNA polymerase alpha chain like domain
CH57_RS01345	SM00363	S4 RNA-binding domain
CH57_RS01355	SM00822	CH57_RS01355
CH57_RS01375	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CH57_RS01375	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CH57_RS01375	SM00493	CH57_RS01375
CH57_RS01400	SM00014	Acid phosphatase homologues
CH57_RS01410	SM00028	Tetratricopeptide repeats
CH57_RS01420	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CH57_RS01435	SM01007	Class II Aldolase and Adducin N-terminal domain
CH57_RS01460	SM00357	Cold shock protein domain
CH57_RS01460	SM00955	CH57_RS01460
CH57_RS01475	SM00478	endonuclease III
CH57_RS01475	SM00525	CH57_RS01475
CH57_RS01485	SM00900	CH57_RS01485
CH57_RS01495	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS01540	SM00382	ATPases associated with a variety of cellular activities
CH57_RS01560	SM00382	ATPases associated with a variety of cellular activities
CH57_RS01570	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS01645	SM00530	Helix-turn-helix XRE-family like proteins 
CH57_RS01705	SM00530	Helix-turn-helix XRE-family like proteins 
CH57_RS01760	SM00354	helix_turn _helix lactose operon repressor
CH57_RS01835	SM00098	Alkaline phosphatase homologues
CH57_RS01845	SM00100	Cyclic nucleotide-monophosphate binding domain
CH57_RS01845	SM00419	helix_turn_helix, cAMP Regulatory protein
CH57_RS01875	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CH57_RS01875	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CH57_RS01900	SM00448	cheY-homologous receiver domain
CH57_RS01900	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS01905	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS01905	SM00387	Histidine kinase-like ATPases
CH57_RS01905	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS01915	SM01321	CH57_RS01915
CH57_RS01940	SM00867	YceI-like domain 
CH57_RS01960	SM00020	Trypsin-like serine protease
CH57_RS01965	SM00530	Helix-turn-helix XRE-family like proteins 
CH57_RS01975	SM00382	ATPases associated with a variety of cellular activities
CH57_RS01975	SM00487	DEAD-like helicases superfamily
CH57_RS01975	SM00490	helicase superfamily c-terminal domain
CH57_RS01975	SM00847	Helicase associated domain (HA2)  Add an annotation
CH57_RS02035	SM00890	Domain of unknown function
CH57_RS02050	SM00422	helix_turn_helix, mercury resistance
CH57_RS02070	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CH57_RS02080	SM01321	CH57_RS02080
CH57_RS02085	SM00091	PAS domain
CH57_RS02085	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02095	SM00953	CH57_RS02095
CH57_RS02130	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02135	SM01321	CH57_RS02135
CH57_RS02165	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02170	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02195	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02215	SM00363	S4 RNA-binding domain
CH57_RS02240	SM00347	helix_turn_helix multiple antibiotic resistance protein
CH57_RS02280	SM00479	CH57_RS02280
CH57_RS02305	SM00354	helix_turn _helix lactose operon repressor
CH57_RS02360	SM01321	CH57_RS02360
CH57_RS02370	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02395	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02495	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02515	SM00411	bacterial (prokaryotic) histone like domain
CH57_RS02520	SM00873	B3/4 domain
CH57_RS02520	SM00874	tRNA synthetase B5 domain
CH57_RS02520	SM00896	Ferredoxin-fold anticodon binding domain
CH57_RS02545	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CH57_RS02580	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02625	SM00421	helix_turn_helix, Lux Regulon
CH57_RS02635	SM00450	Rhodanese Homology Domain
CH57_RS02665	SM00421	helix_turn_helix, Lux Regulon
CH57_RS02770	SM00354	helix_turn _helix lactose operon repressor
CH57_RS02780	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02830	SM00912	haemagglutination activity domain
CH57_RS02860	SM01329	CH57_RS02860
CH57_RS02870	SM00354	helix_turn _helix lactose operon repressor
CH57_RS02880	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02890	SM00829	Enoylreductase
CH57_RS02940	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS02940	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CH57_RS02950	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02955	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CH57_RS02955	SM00091	PAS domain
CH57_RS02955	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CH57_RS02965	SM00382	ATPases associated with a variety of cellular activities
CH57_RS02990	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CH57_RS03060	SM00354	helix_turn _helix lactose operon repressor
CH57_RS03125	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CH57_RS03125	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CH57_RS03130	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CH57_RS03170	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CH57_RS03215	SM00354	helix_turn _helix lactose operon repressor
CH57_RS03240	SM01359	CH57_RS03240
CH57_RS03240	SM01360	CH57_RS03240
CH57_RS03275	SM00382	ATPases associated with a variety of cellular activities
CH57_RS03310	SM00382	ATPases associated with a variety of cellular activities
CH57_RS03335	SM00421	helix_turn_helix, Lux Regulon
CH57_RS03345	SM00357	Cold shock protein domain
CH57_RS03365	SM00729	Elongator protein 3, MiaB family, Radical SAM
CH57_RS03380	SM00936	Penicillin-binding protein 5, C-terminal domain 
CH57_RS03435	SM00382	ATPases associated with a variety of cellular activities
CH57_RS03450	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS03460	SM00116	Domain in cystathionine beta-synthase and other proteins.
CH57_RS03460	SM01091	Transporter associated domain
CH57_RS03475	SM00729	Elongator protein 3, MiaB family, Radical SAM
CH57_RS03545	SM01321	CH57_RS03545
CH57_RS03610	SM00382	ATPases associated with a variety of cellular activities
CH57_RS03635	SM00382	ATPases associated with a variety of cellular activities
CH57_RS03685	SM00357	Cold shock protein domain
CH57_RS03705	SM00382	ATPases associated with a variety of cellular activities
CH57_RS03710	SM00382	ATPases associated with a variety of cellular activities
CH57_RS03730	SM00988	UreE urease accessory protein, N-terminal domain
CH57_RS03805	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS03850	SM00448	cheY-homologous receiver domain
CH57_RS03850	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS03855	SM00387	Histidine kinase-like ATPases
CH57_RS03855	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS03915	SM00797	Allophanate hydrolase subunit 2
CH57_RS03940	SM00986	Uracil DNA glycosylase superfamily
CH57_RS03940	SM00987	UreE urease accessory protein, C-terminal domain 
CH57_RS03960	SM00248	ankyrin repeats
CH57_RS03965	SM00487	DEAD-like helicases superfamily
CH57_RS03965	SM00490	helicase superfamily c-terminal domain
CH57_RS04015	SM00358	Double-stranded RNA binding motif
CH57_RS04015	SM00535	Ribonuclease III family
CH57_RS04035	SM00382	ATPases associated with a variety of cellular activities
CH57_RS04105	SM00382	ATPases associated with a variety of cellular activities
CH57_RS04175	SM00855	Phosphoglycerate mutase family
CH57_RS04180	SM00463	Small MutS-related domain
CH57_RS04220	SM00825	Beta-ketoacyl synthase
CH57_RS04250	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS04260	SM01321	CH57_RS04260
CH57_RS04265	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CH57_RS04310	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS04325	SM00382	ATPases associated with a variety of cellular activities
CH57_RS04335	SM00052	Putative diguanylate phosphodiesterase
CH57_RS04405	SM00869	Autotransporter beta-domain
CH57_RS04435	SM01217	CH57_RS04435
CH57_RS04475	SM00382	ATPases associated with a variety of cellular activities
CH57_RS04490	SM00195	Dual specificity phosphatase, catalytic domain
CH57_RS04490	SM00404	Protein tyrosine phosphatase, catalytic domain motif
CH57_RS04500	SM00563	Phosphate acyltransferases
CH57_RS04565	SM01321	CH57_RS04565
CH57_RS04600	SM00382	ATPases associated with a variety of cellular activities
CH57_RS04630	SM00924	MgtE intracellular N domain
CH57_RS04660	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CH57_RS04665	SM00382	ATPases associated with a variety of cellular activities
CH57_RS04690	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS04690	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS04695	SM00387	Histidine kinase-like ATPases
CH57_RS04700	SM00448	cheY-homologous receiver domain
CH57_RS04700	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS04715	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CH57_RS04780	SM01321	CH57_RS04780
CH57_RS04800	SM00116	Domain in cystathionine beta-synthase and other proteins.
CH57_RS04800	SM01240	CH57_RS04800
CH57_RS04825	SM01321	CH57_RS04825
CH57_RS04835	SM00564	beta-propeller repeat
CH57_RS04855	SM00530	Helix-turn-helix XRE-family like proteins 
CH57_RS04860	SM00028	Tetratricopeptide repeats
CH57_RS04870	SM00562	CH57_RS04870
CH57_RS04875	SM00247	Beta/gamma crystallins
CH57_RS04885	SM00869	Autotransporter beta-domain
CH57_RS04925	SM00271	DnaJ molecular chaperone homology domain
CH57_RS04960	SM01321	CH57_RS04960
CH57_RS05015	SM00938	Nitrogen regulatory protein P-II
CH57_RS05025	SM00382	ATPases associated with a variety of cellular activities
CH57_RS05025	SM00448	cheY-homologous receiver domain
CH57_RS05035	SM00387	Histidine kinase-like ATPases
CH57_RS05035	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS05040	SM01321	CH57_RS05040
CH57_RS05060	SM01211	CH57_RS05060
CH57_RS05065	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS05095	SM01321	CH57_RS05095
CH57_RS05115	SM00382	ATPases associated with a variety of cellular activities
CH57_RS05190	SM00382	ATPases associated with a variety of cellular activities
CH57_RS05190	SM01086	C-terminal, D2-small domain, of ClpB protein
CH57_RS05235	SM00421	helix_turn_helix, Lux Regulon
CH57_RS05255	SM00382	ATPases associated with a variety of cellular activities
CH57_RS05275	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CH57_RS05395	SM01321	CH57_RS05395
CH57_RS05425	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CH57_RS05425	SM00292	breast cancer carboxy-terminal domain
CH57_RS05425	SM00532	Ligase N family
CH57_RS05430	SM00771	ZipA, C-terminal domain (FtsZ-binding)
CH57_RS05460	SM01321	CH57_RS05460
CH57_RS05470	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS05470	SM00387	Histidine kinase-like ATPases
CH57_RS05470	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS05475	SM00448	cheY-homologous receiver domain
CH57_RS05475	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS05485	SM00382	ATPases associated with a variety of cellular activities
CH57_RS05490	SM00450	Rhodanese Homology Domain
CH57_RS05520	SM00327	von Willebrand factor (vWF) type A domain
CH57_RS05525	SM00387	Histidine kinase-like ATPases
CH57_RS05525	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS05530	SM00448	cheY-homologous receiver domain
CH57_RS05530	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS05545	SM00382	ATPases associated with a variety of cellular activities
CH57_RS05590	SM00364	Leucine-rich repeats, bacterial type
CH57_RS05600	SM01130	CH57_RS05600
CH57_RS05620	SM00869	Autotransporter beta-domain
CH57_RS05650	SM00919	Malic enzyme, NAD binding domain
CH57_RS05650	SM01274	CH57_RS05650
CH57_RS05670	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CH57_RS05685	SM00421	helix_turn_helix, Lux Regulon
CH57_RS05685	SM00448	cheY-homologous receiver domain
CH57_RS05720	SM00382	ATPases associated with a variety of cellular activities
CH57_RS05780	SM01321	CH57_RS05780
CH57_RS05795	SM01130	CH57_RS05795
CH57_RS05845	SM01321	CH57_RS05845
CH57_RS05855	SM00840	CH57_RS05855
CH57_RS05870	SM01001	AIR carboxylase
CH57_RS05885	SM00382	ATPases associated with a variety of cellular activities
CH57_RS05895	SM00822	CH57_RS05895
CH57_RS05905	SM00244	prohibitin homologues
CH57_RS05915	SM00422	helix_turn_helix, mercury resistance
CH57_RS06075	SM00387	Histidine kinase-like ATPases
CH57_RS06080	SM00493	CH57_RS06080
CH57_RS06090	SM00382	ATPases associated with a variety of cellular activities
CH57_RS06100	SM00382	ATPases associated with a variety of cellular activities
CH57_RS06195	SM00938	Nitrogen regulatory protein P-II
CH57_RS06200	SM00382	ATPases associated with a variety of cellular activities
CH57_RS06205	SM00382	ATPases associated with a variety of cellular activities
CH57_RS06210	SM00344	helix_turn_helix ASNC type
CH57_RS06250	SM00411	bacterial (prokaryotic) histone like domain
CH57_RS06255	SM00382	ATPases associated with a variety of cellular activities
CH57_RS06255	SM00464	Found in ATP-dependent protease La (LON)
CH57_RS06260	SM00382	ATPases associated with a variety of cellular activities
CH57_RS06260	SM00994	ClpX C4-type zinc finger
CH57_RS06260	SM01086	C-terminal, D2-small domain, of ClpB protein
CH57_RS06345	SM00981	CH57_RS06345
CH57_RS06365	SM00861	Transketolase, pyrimidine binding domain
CH57_RS06370	SM01321	CH57_RS06370
CH57_RS06420	SM01321	CH57_RS06420
CH57_RS06435	SM01323	CH57_RS06435
CH57_RS06460	SM01321	CH57_RS06460
CH57_RS06485	SM00642	Alpha-amylase domain
CH57_RS06505	SM00091	PAS domain
CH57_RS06505	SM00387	Histidine kinase-like ATPases
CH57_RS06505	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS06510	SM00448	cheY-homologous receiver domain
CH57_RS06510	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS06530	SM00382	ATPases associated with a variety of cellular activities
CH57_RS06595	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CH57_RS06620	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CH57_RS06675	SM00900	CH57_RS06675
CH57_RS06720	SM00710	Parallel beta-helix repeats
CH57_RS06720	SM00912	haemagglutination activity domain
CH57_RS06745	SM00382	ATPases associated with a variety of cellular activities
CH57_RS06755	SM00382	ATPases associated with a variety of cellular activities
CH57_RS06770	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS06815	SM00347	helix_turn_helix multiple antibiotic resistance protein
CH57_RS06830	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CH57_RS06840	SM01144	CH57_RS06840
CH57_RS06845	SM00881	CoA binding domain
CH57_RS06850	SM00155	Phospholipase D. Active site motifs.
CH57_RS06895	SM00382	ATPases associated with a variety of cellular activities
CH57_RS06895	SM01086	C-terminal, D2-small domain, of ClpB protein
CH57_RS06905	SM00363	S4 RNA-binding domain
CH57_RS06920	SM01321	CH57_RS06920
CH57_RS06930	SM00830	Chorismate mutase type II
CH57_RS06945	SM00382	ATPases associated with a variety of cellular activities
CH57_RS06955	SM00830	Chorismate mutase type II
CH57_RS06965	SM00448	cheY-homologous receiver domain
CH57_RS06965	SM00850	LytTr DNA-binding domain
CH57_RS06990	SM01321	CH57_RS06990
CH57_RS07020	SM00382	ATPases associated with a variety of cellular activities
CH57_RS07020	SM00962	SRP54-type protein, GTPase domain
CH57_RS07020	SM00963	SRP54-type protein, helical bundle domain
CH57_RS07045	SM01091	Transporter associated domain
CH57_RS07050	SM01321	CH57_RS07050
CH57_RS07110	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CH57_RS07125	SM00382	ATPases associated with a variety of cellular activities
CH57_RS07155	SM00861	Transketolase, pyrimidine binding domain
CH57_RS07170	SM00382	ATPases associated with a variety of cellular activities
CH57_RS07215	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CH57_RS07220	SM01007	Class II Aldolase and Adducin N-terminal domain
CH57_RS07225	SM00420	helix_turn_helix, Deoxyribose operon repressor
CH57_RS07225	SM01134	CH57_RS07225
CH57_RS07235	SM01321	CH57_RS07235
CH57_RS07240	SM00382	ATPases associated with a variety of cellular activities
CH57_RS07305	SM01235	CH57_RS07305
CH57_RS07310	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS07325	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CH57_RS07340	SM01120	CH57_RS07340
CH57_RS07355	SM00829	Enoylreductase
CH57_RS07370	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CH57_RS07370	SM00534	ATPase domain of DNA mismatch repair MUTS family
CH57_RS07380	SM00257	Lysin motif
CH57_RS07485	SM01192	CH57_RS07485
CH57_RS07485	SM01193	CH57_RS07485
CH57_RS07505	SM00954	Region found in RelA / SpoT proteins
CH57_RS07510	SM00073	Histidine Phosphotransfer domain
CH57_RS07510	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS07510	SM00387	Histidine kinase-like ATPases
CH57_RS07510	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS07510	SM00448	cheY-homologous receiver domain
CH57_RS07515	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CH57_RS07520	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CH57_RS07570	SM00382	ATPases associated with a variety of cellular activities
CH57_RS07580	SM00487	DEAD-like helicases superfamily
CH57_RS07580	SM00490	helicase superfamily c-terminal domain
CH57_RS07580	SM00847	Helicase associated domain (HA2)  Add an annotation
CH57_RS07640	SM00382	ATPases associated with a variety of cellular activities
CH57_RS07645	SM00947	Carbonic anhydrase
CH57_RS07690	SM01321	CH57_RS07690
CH57_RS07715	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CH57_RS07715	SM00895	CH57_RS07715
CH57_RS07730	SM00644	CH57_RS07730
CH57_RS07755	SM01240	CH57_RS07755
CH57_RS07780	SM01321	CH57_RS07780
CH57_RS07790	SM00382	ATPases associated with a variety of cellular activities
CH57_RS07875	SM00382	ATPases associated with a variety of cellular activities
CH57_RS07880	SM00382	ATPases associated with a variety of cellular activities
CH57_RS07895	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CH57_RS07895	SM00866	CH57_RS07895
CH57_RS07920	SM00382	ATPases associated with a variety of cellular activities
CH57_RS07925	SM00382	ATPases associated with a variety of cellular activities
CH57_RS07935	SM00072	Guanylate kinase homologues.
CH57_RS07940	SM00849	Metallo-beta-lactamase superfamily
CH57_RS07945	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CH57_RS07960	SM00382	ATPases associated with a variety of cellular activities
CH57_RS08040	SM00530	Helix-turn-helix XRE-family like proteins 
CH57_RS08055	SM00487	DEAD-like helicases superfamily
CH57_RS08055	SM00490	helicase superfamily c-terminal domain
CH57_RS08060	SM00028	Tetratricopeptide repeats
CH57_RS08065	SM00316	Ribosomal protein S1-like RNA-binding domain
CH57_RS08065	SM00322	K homology RNA-binding domain
CH57_RS08080	SM01387	CH57_RS08080
CH57_RS08100	SM00316	Ribosomal protein S1-like RNA-binding domain
CH57_RS08100	SM00322	K homology RNA-binding domain
CH57_RS08135	SM00382	ATPases associated with a variety of cellular activities
CH57_RS08145	SM01103	CH57_RS08145
CH57_RS08160	SM00448	cheY-homologous receiver domain
CH57_RS08160	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS08165	SM00387	Histidine kinase-like ATPases
CH57_RS08165	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS08260	SM00116	Domain in cystathionine beta-synthase and other proteins.
CH57_RS08260	SM01091	Transporter associated domain
CH57_RS08305	SM01321	CH57_RS08305
CH57_RS08350	SM00382	ATPases associated with a variety of cellular activities
CH57_RS08390	SM00749	bacterial OsmY and nodulation domain
CH57_RS08410	SM00073	Histidine Phosphotransfer domain
CH57_RS08410	SM00091	PAS domain
CH57_RS08410	SM00387	Histidine kinase-like ATPases
CH57_RS08410	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS08410	SM00448	cheY-homologous receiver domain
CH57_RS08420	SM00729	Elongator protein 3, MiaB family, Radical SAM
CH57_RS08475	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CH57_RS08480	SM01321	CH57_RS08480
CH57_RS08485	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CH57_RS08520	SM00382	ATPases associated with a variety of cellular activities
CH57_RS08530	SM00116	Domain in cystathionine beta-synthase and other proteins.
CH57_RS08550	SM00382	ATPases associated with a variety of cellular activities
CH57_RS08600	SM00382	ATPases associated with a variety of cellular activities
CH57_RS08610	SM00354	helix_turn _helix lactose operon repressor
CH57_RS08620	SM00642	Alpha-amylase domain
CH57_RS08760	SM00316	Ribosomal protein S1-like RNA-binding domain
CH57_RS08785	SM00052	Putative diguanylate phosphodiesterase
CH57_RS08785	SM00267	diguanylate cyclase
CH57_RS08790	SM00829	Enoylreductase
CH57_RS08815	SM00878	Biotin carboxylase C-terminal domain
CH57_RS08855	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CH57_RS08855	SM00895	CH57_RS08855
CH57_RS08875	SM00849	Metallo-beta-lactamase superfamily
CH57_RS08890	SM00357	Cold shock protein domain
CH57_RS08895	SM00357	Cold shock protein domain
CH57_RS08900	SM01321	CH57_RS08900
CH57_RS08945	SM00382	ATPases associated with a variety of cellular activities
CH57_RS08980	SM00382	ATPases associated with a variety of cellular activities
CH57_RS08995	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS09005	SM01133	CH57_RS09005
CH57_RS09020	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS09060	SM00530	Helix-turn-helix XRE-family like proteins 
CH57_RS09075	SM00860	SMI1 / KNR4 family
CH57_RS09130	SM00382	ATPases associated with a variety of cellular activities
CH57_RS09130	SM01086	C-terminal, D2-small domain, of ClpB protein
CH57_RS09215	SM00382	ATPases associated with a variety of cellular activities
CH57_RS09260	SM00912	haemagglutination activity domain
CH57_RS09265	SM01018	B12 binding domain
CH57_RS09270	SM00346	helix_turn_helix isocitrate lyase regulation
CH57_RS09335	SM00798	AICARFT/IMPCHase bienzyme
CH57_RS09335	SM00851	MGS-like domain
CH57_RS09340	SM01209	CH57_RS09340
CH57_RS09340	SM01210	CH57_RS09340
CH57_RS09350	SM00411	bacterial (prokaryotic) histone like domain
CH57_RS09415	SM00876	Biotin and Thiamin Synthesis associated domain
CH57_RS09430	SM01321	CH57_RS09430
CH57_RS09435	SM00663	RNA polymerase I subunit A N-terminus
CH57_RS09460	SM00649	Ribosomal protein L11/L12
CH57_RS09465	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CH57_RS09465	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CH57_RS09500	SM00382	ATPases associated with a variety of cellular activities
CH57_RS09575	SM01321	CH57_RS09575
CH57_RS09610	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CH57_RS09610	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CH57_RS09615	SM01004	Delta-aminolevulinic acid dehydratase
CH57_RS09625	SM00382	ATPases associated with a variety of cellular activities
CH57_RS09730	SM00382	ATPases associated with a variety of cellular activities
CH57_RS09785	SM00382	ATPases associated with a variety of cellular activities
CH57_RS09790	SM00382	ATPases associated with a variety of cellular activities
CH57_RS09815	SM01321	CH57_RS09815
CH57_RS09835	SM00382	ATPases associated with a variety of cellular activities
CH57_RS09840	SM00382	ATPases associated with a variety of cellular activities
CH57_RS09840	SM00962	SRP54-type protein, GTPase domain
CH57_RS09840	SM00963	SRP54-type protein, helical bundle domain
CH57_RS09945	SM00341	Helicase and RNase D C-terminal
CH57_RS09945	SM00487	DEAD-like helicases superfamily
CH57_RS09945	SM00490	helicase superfamily c-terminal domain
CH57_RS09945	SM00956	CH57_RS09945
CH57_RS10015	SM01219	CH57_RS10015
CH57_RS10050	SM01321	CH57_RS10050
CH57_RS10135	SM00984	UDP binding domain
CH57_RS10155	SM00357	Cold shock protein domain
CH57_RS10155	SM00382	ATPases associated with a variety of cellular activities
CH57_RS10155	SM00959	Rho termination factor, N-terminal domain
CH57_RS10165	SM00487	DEAD-like helicases superfamily
CH57_RS10165	SM00490	helicase superfamily c-terminal domain
CH57_RS10245	SM00507	HNH nucleases
CH57_RS10330	SM00382	ATPases associated with a variety of cellular activities
CH57_RS10355	SM00382	ATPases associated with a variety of cellular activities
CH57_RS10460	SM00382	ATPases associated with a variety of cellular activities
CH57_RS10490	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CH57_RS10505	SM00382	ATPases associated with a variety of cellular activities
CH57_RS10560	SM00642	Alpha-amylase domain
CH57_RS10565	SM00642	Alpha-amylase domain
CH57_RS10575	SM00257	Lysin motif
CH57_RS10575	SM00634	Bacterial Ig-like domain (group 1)
CH57_RS10600	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CH57_RS10635	SM00354	helix_turn _helix lactose operon repressor
CH57_RS10650	SM00448	cheY-homologous receiver domain
CH57_RS10650	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS10680	SM00382	ATPases associated with a variety of cellular activities
CH57_RS10685	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS10685	SM00387	Histidine kinase-like ATPases
CH57_RS10685	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS10685	SM00448	cheY-homologous receiver domain
CH57_RS10705	SM01321	CH57_RS10705
CH57_RS10720	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CH57_RS10725	SM00235	Zinc-dependent metalloprotease
CH57_RS10780	SM00869	Autotransporter beta-domain
CH57_RS10800	SM00052	Putative diguanylate phosphodiesterase
CH57_RS10840	SM00052	Putative diguanylate phosphodiesterase
CH57_RS10840	SM00267	diguanylate cyclase
CH57_RS10850	SM00382	ATPases associated with a variety of cellular activities
CH57_RS10855	SM00382	ATPases associated with a variety of cellular activities
CH57_RS10885	SM00912	haemagglutination activity domain
CH57_RS10900	SM00387	Histidine kinase-like ATPases
CH57_RS10905	SM00421	helix_turn_helix, Lux Regulon
CH57_RS10905	SM00448	cheY-homologous receiver domain
CH57_RS10970	SM00382	ATPases associated with a variety of cellular activities
CH57_RS10985	SM00530	Helix-turn-helix XRE-family like proteins 
CH57_RS11015	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS11025	SM00382	ATPases associated with a variety of cellular activities
CH57_RS11155	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CH57_RS11170	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CH57_RS11170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS11170	SM01358	CH57_RS11170
CH57_RS11245	SM00642	Alpha-amylase domain
CH57_RS11320	SM00387	Histidine kinase-like ATPases
CH57_RS11320	SM00433	TopoisomeraseII
CH57_RS11335	SM00480	DNA polymerase III beta subunit
CH57_RS11340	SM00382	ATPases associated with a variety of cellular activities
CH57_RS11340	SM00760	Bacterial dnaA protein helix-turn-helix domain
CH57_RS11400	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS11415	SM00382	ATPases associated with a variety of cellular activities
CH57_RS11450	SM00382	ATPases associated with a variety of cellular activities
CH57_RS11495	SM01228	CH57_RS11495
CH57_RS11505	SM00344	helix_turn_helix ASNC type
CH57_RS11515	SM00327	von Willebrand factor (vWF) type A domain
CH57_RS11520	SM00382	ATPases associated with a variety of cellular activities
CH57_RS11550	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CH57_RS11550	SM00895	CH57_RS11550
CH57_RS11610	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CH57_RS11610	SM00474	3'-5' exonuclease
CH57_RS11610	SM00475	5'-3' exonuclease
CH57_RS11610	SM00482	DNA polymerase A domain
CH57_RS11620	SM01321	CH57_RS11620
CH57_RS11635	SM00729	Elongator protein 3, MiaB family, Radical SAM
CH57_RS11640	SM00382	ATPases associated with a variety of cellular activities
CH57_RS11640	SM00448	cheY-homologous receiver domain
CH57_RS11645	SM00091	PAS domain
CH57_RS11645	SM00387	Histidine kinase-like ATPases
CH57_RS11645	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS11650	SM01230	CH57_RS11650
CH57_RS11680	SM00382	ATPases associated with a variety of cellular activities
CH57_RS11710	SM00487	DEAD-like helicases superfamily
CH57_RS11710	SM00490	helicase superfamily c-terminal domain
CH57_RS11720	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CH57_RS11720	SM00954	Region found in RelA / SpoT proteins
CH57_RS11725	SM01409	CH57_RS11725
CH57_RS11730	SM00072	Guanylate kinase homologues.
CH57_RS11735	SM00532	Ligase N family
CH57_RS11790	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CH57_RS11790	SM01232	CH57_RS11790
CH57_RS11830	SM00829	Enoylreductase
CH57_RS11850	SM00450	Rhodanese Homology Domain
CH57_RS11875	SM00971	Serine acetyltransferase, N-terminal
CH57_RS11885	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS11890	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS11890	SM00387	Histidine kinase-like ATPases
CH57_RS11890	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS11895	SM00448	cheY-homologous receiver domain
CH57_RS11895	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS11995	SM01321	CH57_RS11995
CH57_RS12000	SM00382	ATPases associated with a variety of cellular activities
CH57_RS12005	SM00382	ATPases associated with a variety of cellular activities
CH57_RS12055	SM00382	ATPases associated with a variety of cellular activities
CH57_RS12055	SM01086	C-terminal, D2-small domain, of ClpB protein
CH57_RS12070	SM00354	helix_turn _helix lactose operon repressor
CH57_RS12080	SM00487	DEAD-like helicases superfamily
CH57_RS12080	SM00490	helicase superfamily c-terminal domain
CH57_RS12130	SM00420	helix_turn_helix, Deoxyribose operon repressor
CH57_RS12130	SM01134	CH57_RS12130
CH57_RS12140	SM00450	Rhodanese Homology Domain
CH57_RS12145	SM00421	helix_turn_helix, Lux Regulon
CH57_RS12195	SM00899	CH57_RS12195
CH57_RS12205	SM00316	Ribosomal protein S1-like RNA-binding domain
CH57_RS12205	SM00732	Likely ribonuclease with RNase H fold.
CH57_RS12215	SM00448	cheY-homologous receiver domain
CH57_RS12215	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS12220	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS12220	SM00387	Histidine kinase-like ATPases
CH57_RS12220	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS12235	SM00363	S4 RNA-binding domain
CH57_RS12365	SM00382	ATPases associated with a variety of cellular activities
CH57_RS12375	SM00354	helix_turn _helix lactose operon repressor
CH57_RS12410	SM00100	Cyclic nucleotide-monophosphate binding domain
CH57_RS12410	SM00419	helix_turn_helix, cAMP Regulatory protein
CH57_RS12445	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS12450	SM00382	ATPases associated with a variety of cellular activities
CH57_RS12540	SM00838	Elongation factor G C-terminus
CH57_RS12540	SM00889	Elongation factor G, domain IV
CH57_RS12550	SM01321	CH57_RS12550
CH57_RS12565	SM01403	CH57_RS12565
CH57_RS12585	SM01382	CH57_RS12585
CH57_RS12585	SM01383	CH57_RS12585
CH57_RS12600	SM00322	K homology RNA-binding domain
CH57_RS12620	SM01374	CH57_RS12620
CH57_RS12625	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CH57_RS12690	SM00363	S4 RNA-binding domain
CH57_RS12690	SM01390	CH57_RS12690
CH57_RS12695	SM00662	RNA polymerases D
CH57_RS12705	SM00422	helix_turn_helix, mercury resistance
CH57_RS12770	SM00382	ATPases associated with a variety of cellular activities
CH57_RS12805	SM00421	helix_turn_helix, Lux Regulon
CH57_RS12805	SM00448	cheY-homologous receiver domain
CH57_RS12810	SM00387	Histidine kinase-like ATPases
CH57_RS12810	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS12810	SM00448	cheY-homologous receiver domain
CH57_RS12830	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS12870	SM00382	ATPases associated with a variety of cellular activities
CH57_RS12935	SM00382	ATPases associated with a variety of cellular activities
CH57_RS12970	SM00729	Elongator protein 3, MiaB family, Radical SAM
CH57_RS13070	SM00060	Fibronectin type 3 domain
CH57_RS13075	SM00869	Autotransporter beta-domain
CH57_RS13090	SM00563	Phosphate acyltransferases
CH57_RS13120	SM00829	Enoylreductase
CH57_RS13125	SM00382	ATPases associated with a variety of cellular activities
CH57_RS13130	SM01005	Alanine racemase, C-terminal domain
CH57_RS13165	SM01007	Class II Aldolase and Adducin N-terminal domain
CH57_RS13190	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS13195	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS13220	SM01276	CH57_RS13220
CH57_RS13245	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CH57_RS13275	SM00883	Chaperonin 10 Kd subunit
CH57_RS13295	SM00841	Elongation factor P, C-terminal
CH57_RS13295	SM01185	CH57_RS13295
CH57_RS13305	SM01321	CH57_RS13305
CH57_RS13365	SM00479	CH57_RS13365
CH57_RS13395	SM00257	Lysin motif
CH57_RS13395	SM00646	CH57_RS13395
CH57_RS13400	SM00853	MutL C terminal dimerisation domain
CH57_RS13400	SM01340	CH57_RS13400
CH57_RS13420	SM00244	prohibitin homologues
CH57_RS13425	SM00244	prohibitin homologues
CH57_RS13435	SM00788	Adenylosuccinate synthetase
CH57_RS13445	SM00316	Ribosomal protein S1-like RNA-binding domain
CH57_RS13445	SM00357	Cold shock protein domain
CH57_RS13445	SM00955	CH57_RS13445
CH57_RS13450	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CH57_RS13470	SM00382	ATPases associated with a variety of cellular activities
CH57_RS13480	SM00382	ATPases associated with a variety of cellular activities
CH57_RS13560	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS13595	SM01133	CH57_RS13595
CH57_RS13615	SM00382	ATPases associated with a variety of cellular activities
CH57_RS13685	SM00267	diguanylate cyclase
CH57_RS13720	SM00749	bacterial OsmY and nodulation domain
CH57_RS13745	SM01133	CH57_RS13745
CH57_RS13760	SM00382	ATPases associated with a variety of cellular activities
CH57_RS13790	SM00382	ATPases associated with a variety of cellular activities
CH57_RS13795	SM00530	Helix-turn-helix XRE-family like proteins 
CH57_RS13815	SM00267	diguanylate cyclase
CH57_RS13825	SM00831	Cation transporter/ATPase, N-terminus
CH57_RS13845	SM00855	Phosphoglycerate mutase family
CH57_RS13850	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS13850	SM00871	Bacterial transcription activator, effector binding domain
CH57_RS13860	SM00448	cheY-homologous receiver domain
CH57_RS13860	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS13890	SM00852	Probable molybdopterin binding domain
CH57_RS13915	SM00271	DnaJ molecular chaperone homology domain
CH57_RS13940	SM00904	Riboflavin kinase
CH57_RS13975	SM01321	CH57_RS13975
CH57_RS13985	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CH57_RS13990	SM00851	MGS-like domain
CH57_RS13990	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CH57_RS14015	SM01321	CH57_RS14015
CH57_RS14040	SM00650	Ribosomal RNA adenine dimethylases
CH57_RS14060	SM00271	DnaJ molecular chaperone homology domain
CH57_RS14110	SM00382	ATPases associated with a variety of cellular activities
CH57_RS14110	SM01086	C-terminal, D2-small domain, of ClpB protein
CH57_RS14170	SM00487	DEAD-like helicases superfamily
CH57_RS14170	SM00490	helicase superfamily c-terminal domain
CH57_RS14175	SM00486	DNA polymerase type-B family
CH57_RS14185	SM00382	ATPases associated with a variety of cellular activities
CH57_RS14220	SM00382	ATPases associated with a variety of cellular activities
CH57_RS14250	SM01329	CH57_RS14250
CH57_RS14255	SM00917	LeuA allosteric (dimerisation) domain
CH57_RS14260	SM01321	CH57_RS14260
CH57_RS14300	SM01321	CH57_RS14300
CH57_RS14310	SM00354	helix_turn _helix lactose operon repressor
CH57_RS14385	SM00842	Cell division protein FtsA
CH57_RS14390	SM00864	Tubulin/FtsZ family, GTPase domain
CH57_RS14390	SM00865	Tubulin/FtsZ family, C-terminal domain
CH57_RS14410	SM00957	SecA DEAD-like domain
CH57_RS14410	SM00958	SecA preprotein cross-linking domain
CH57_RS14420	SM00382	ATPases associated with a variety of cellular activities
CH57_RS14480	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CH57_RS14480	SM00895	CH57_RS14480
CH57_RS14505	SM00858	CH57_RS14505
CH57_RS14515	SM01321	CH57_RS14515
CH57_RS14535	SM00869	Autotransporter beta-domain
CH57_RS14560	SM00220	Serine/Threonine protein kinases, catalytic domain
CH57_RS14570	SM00327	von Willebrand factor (vWF) type A domain
CH57_RS14575	SM00327	von Willebrand factor (vWF) type A domain
CH57_RS14585	SM00327	von Willebrand factor (vWF) type A domain
CH57_RS14595	SM00912	haemagglutination activity domain
CH57_RS14630	SM00869	Autotransporter beta-domain
CH57_RS14645	SM00382	ATPases associated with a variety of cellular activities
CH57_RS14655	SM00354	helix_turn _helix lactose operon repressor
CH57_RS14680	SM01217	CH57_RS14680
CH57_RS14790	SM00382	ATPases associated with a variety of cellular activities
CH57_RS14830	SM00400	zinc finger
CH57_RS14830	SM00493	CH57_RS14830
CH57_RS14830	SM00766	DNA primase DnaG DnaB-binding
CH57_RS14845	SM01207	CH57_RS14845
CH57_RS14850	SM00905	Dihydroneopterin aldolase
CH57_RS14860	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CH57_RS14865	SM00287	Bacterial SH3 domain homologues
CH57_RS14870	SM01118	CH57_RS14870
CH57_RS14950	SM00387	Histidine kinase-like ATPases
CH57_RS14950	SM00433	TopoisomeraseII
CH57_RS14965	SM00434	DNA Topoisomerase IV
CH57_RS14970	SM00563	Phosphate acyltransferases
CH57_RS15000	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS15095	SM01321	CH57_RS15095
CH57_RS15165	SM00382	ATPases associated with a variety of cellular activities
CH57_RS15190	SM00382	ATPases associated with a variety of cellular activities
CH57_RS15210	SM00858	CH57_RS15210
CH57_RS15240	SM01321	CH57_RS15240
CH57_RS15295	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS15400	SM00354	helix_turn _helix lactose operon repressor
CH57_RS15435	SM00869	Autotransporter beta-domain
CH57_RS15460	SM00382	ATPases associated with a variety of cellular activities
CH57_RS15465	SM00382	ATPases associated with a variety of cellular activities
CH57_RS15505	SM00382	ATPases associated with a variety of cellular activities
CH57_RS15535	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CH57_RS15555	SM00927	DNA mismatch repair enzyme MutH
CH57_RS15580	SM00563	Phosphate acyltransferases
CH57_RS15590	SM00354	helix_turn _helix lactose operon repressor
CH57_RS15615	SM00849	Metallo-beta-lactamase superfamily
CH57_RS15625	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CH57_RS15625	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS15625	SM00319	Homologues of the ligand binding domain of Tar
CH57_RS15635	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS15695	SM00382	ATPases associated with a variety of cellular activities
CH57_RS15715	SM00947	Carbonic anhydrase
CH57_RS15735	SM00869	Autotransporter beta-domain
CH57_RS15745	SM00382	ATPases associated with a variety of cellular activities
CH57_RS15765	SM01321	CH57_RS15765
CH57_RS15775	SM00420	helix_turn_helix, Deoxyribose operon repressor
CH57_RS15775	SM01134	CH57_RS15775
CH57_RS15855	SM00354	helix_turn _helix lactose operon repressor
CH57_RS15870	SM00354	helix_turn _helix lactose operon repressor
CH57_RS15910	SM00382	ATPases associated with a variety of cellular activities
CH57_RS15915	SM00382	ATPases associated with a variety of cellular activities
CH57_RS16030	SM00778	Zinc-binding domain of primase-helicase
CH57_RS16030	SM00885	D5 N terminal like
CH57_RS16035	SM00530	Helix-turn-helix XRE-family like proteins 
CH57_RS16045	SM00530	Helix-turn-helix XRE-family like proteins 
CH57_RS16080	SM00937	CH57_RS16080
CH57_RS16110	SM00387	Histidine kinase-like ATPases
CH57_RS16110	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS16115	SM00448	cheY-homologous receiver domain
CH57_RS16115	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS16190	SM01011	Aminopeptidase P, N-terminal domain
CH57_RS16255	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CH57_RS16260	SM00382	ATPases associated with a variety of cellular activities
CH57_RS16270	SM01321	CH57_RS16270
CH57_RS16275	SM00861	Transketolase, pyrimidine binding domain
CH57_RS16300	SM00731	SprT homologues.
CH57_RS16325	SM00732	Likely ribonuclease with RNase H fold.
CH57_RS16340	SM00382	ATPases associated with a variety of cellular activities
CH57_RS16360	SM01152	CH57_RS16360
CH57_RS16370	SM00729	Elongator protein 3, MiaB family, Radical SAM
CH57_RS16405	SM00478	endonuclease III
CH57_RS16405	SM00525	CH57_RS16405
CH57_RS16435	SM00382	ATPases associated with a variety of cellular activities
CH57_RS16520	SM00382	ATPases associated with a variety of cellular activities
CH57_RS16520	SM01086	C-terminal, D2-small domain, of ClpB protein
CH57_RS16585	SM00421	helix_turn_helix, Lux Regulon
CH57_RS16615	SM01006	Siderophore biosynthesis protein domain
CH57_RS16650	SM00052	Putative diguanylate phosphodiesterase
CH57_RS16650	SM00091	PAS domain
CH57_RS16650	SM00267	diguanylate cyclase
CH57_RS16680	SM00869	Autotransporter beta-domain
CH57_RS16685	SM00364	Leucine-rich repeats, bacterial type
CH57_RS16690	SM00364	Leucine-rich repeats, bacterial type
CH57_RS16695	SM00364	Leucine-rich repeats, bacterial type
CH57_RS16695	SM00369	Leucine-rich repeats, typical (most populated) subfamily
CH57_RS16715	SM00823	Phosphopantetheine attachment site
CH57_RS16715	SM00825	Beta-ketoacyl synthase
CH57_RS16725	SM00382	ATPases associated with a variety of cellular activities
CH57_RS16770	SM00646	CH57_RS16770
CH57_RS16785	SM00925	MltA specific insert domain
CH57_RS16820	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CH57_RS16820	SM00475	5'-3' exonuclease
CH57_RS16840	SM01321	CH57_RS16840
CH57_RS16870	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CH57_RS16915	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CH57_RS16925	SM00935	Outer membrane protein (OmpH-like)
CH57_RS16955	SM00481	DNA polymerase alpha chain like domain
CH57_RS16970	SM00977	TilS substrate C-terminal domain
CH57_RS16990	SM01322	CH57_RS16990
CH57_RS17030	SM00382	ATPases associated with a variety of cellular activities
CH57_RS17030	SM00930	CH57_RS17030
CH57_RS17085	SM00257	Lysin motif
CH57_RS17090	SM00849	Metallo-beta-lactamase superfamily
CH57_RS17105	SM00479	CH57_RS17105
CH57_RS17130	SM00382	ATPases associated with a variety of cellular activities
CH57_RS17160	SM00778	Zinc-binding domain of primase-helicase
CH57_RS17210	SM01321	CH57_RS17210
CH57_RS17280	SM00861	Transketolase, pyrimidine binding domain
CH57_RS17295	SM00881	CoA binding domain
CH57_RS17390	SM00382	ATPases associated with a variety of cellular activities
CH57_RS17405	SM00855	Phosphoglycerate mutase family
CH57_RS17450	SM00382	ATPases associated with a variety of cellular activities
CH57_RS17475	SM00382	ATPases associated with a variety of cellular activities
CH57_RS17495	SM00729	Elongator protein 3, MiaB family, Radical SAM
CH57_RS17495	SM00876	Biotin and Thiamin Synthesis associated domain
CH57_RS17515	SM00382	ATPases associated with a variety of cellular activities
CH57_RS17520	SM00487	DEAD-like helicases superfamily
CH57_RS17520	SM00490	helicase superfamily c-terminal domain
CH57_RS17540	SM00729	Elongator protein 3, MiaB family, Radical SAM
CH57_RS17570	SM01321	CH57_RS17570
CH57_RS17615	SM01321	CH57_RS17615
CH57_RS17645	SM01118	CH57_RS17645
CH57_RS17650	SM00507	HNH nucleases
CH57_RS17665	SM00382	ATPases associated with a variety of cellular activities
CH57_RS17710	SM00382	ATPases associated with a variety of cellular activities
CH57_RS17725	SM00450	Rhodanese Homology Domain
CH57_RS17745	SM00382	ATPases associated with a variety of cellular activities
CH57_RS17780	SM00487	DEAD-like helicases superfamily
CH57_RS17780	SM00488	CH57_RS17780
CH57_RS17780	SM00491	CH57_RS17780
CH57_RS17785	SM01060	CH57_RS17785
CH57_RS17800	SM00852	Probable molybdopterin binding domain
CH57_RS17830	SM00434	DNA Topoisomerase IV
CH57_RS17840	SM00387	Histidine kinase-like ATPases
CH57_RS17840	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS17840	SM00448	cheY-homologous receiver domain
CH57_RS17845	SM00421	helix_turn_helix, Lux Regulon
CH57_RS17845	SM00448	cheY-homologous receiver domain
CH57_RS17875	SM01321	CH57_RS17875
CH57_RS17885	SM01321	CH57_RS17885
CH57_RS17920	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CH57_RS17920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS17935	SM00530	Helix-turn-helix XRE-family like proteins 
CH57_RS17955	SM00420	helix_turn_helix, Deoxyribose operon repressor
CH57_RS17955	SM01134	CH57_RS17955
CH57_RS18095	SM01321	CH57_RS18095
CH57_RS18105	SM00487	DEAD-like helicases superfamily
CH57_RS18105	SM00490	helicase superfamily c-terminal domain
CH57_RS18110	SM00363	S4 RNA-binding domain
CH57_RS18125	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18145	SM00052	Putative diguanylate phosphodiesterase
CH57_RS18155	SM00014	Acid phosphatase homologues
CH57_RS18160	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CH57_RS18170	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CH57_RS18170	SM00895	CH57_RS18170
CH57_RS18185	SM00841	Elongation factor P, C-terminal
CH57_RS18185	SM01185	CH57_RS18185
CH57_RS18235	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18265	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS18290	SM00518	AP endonuclease family 2
CH57_RS18320	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18350	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18350	SM00930	CH57_RS18350
CH57_RS18360	SM00936	Penicillin-binding protein 5, C-terminal domain 
CH57_RS18375	SM00420	helix_turn_helix, Deoxyribose operon repressor
CH57_RS18375	SM01134	CH57_RS18375
CH57_RS18380	SM01133	CH57_RS18380
CH57_RS18385	SM00014	Acid phosphatase homologues
CH57_RS18425	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18460	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18465	SM00825	Beta-ketoacyl synthase
CH57_RS18470	SM01321	CH57_RS18470
CH57_RS18505	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18510	SM00981	CH57_RS18510
CH57_RS18555	SM00849	Metallo-beta-lactamase superfamily
CH57_RS18570	SM01321	CH57_RS18570
CH57_RS18620	SM00357	Cold shock protein domain
CH57_RS18630	SM01150	CH57_RS18630
CH57_RS18640	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18645	SM00849	Metallo-beta-lactamase superfamily
CH57_RS18655	SM00411	bacterial (prokaryotic) histone like domain
CH57_RS18660	SM00316	Ribosomal protein S1-like RNA-binding domain
CH57_RS18690	SM00870	CH57_RS18690
CH57_RS18730	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18740	SM00843	CH57_RS18740
CH57_RS18745	SM00344	helix_turn_helix ASNC type
CH57_RS18760	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18765	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18775	SM00316	Ribosomal protein S1-like RNA-binding domain
CH57_RS18780	SM01321	CH57_RS18780
CH57_RS18795	SM00357	Cold shock protein domain
CH57_RS18800	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18860	SM00830	Chorismate mutase type II
CH57_RS18865	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18870	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS18870	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CH57_RS18905	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18920	SM00244	prohibitin homologues
CH57_RS18935	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS18940	SM00382	ATPases associated with a variety of cellular activities
CH57_RS18975	SM01321	CH57_RS18975
CH57_RS19015	SM00851	MGS-like domain
CH57_RS19025	SM00881	CoA binding domain
CH57_RS19030	SM00992	Hemimethylated DNA-binding protein YccV like
CH57_RS19035	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CH57_RS19095	SM00825	Beta-ketoacyl synthase
CH57_RS19135	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CH57_RS19175	SM00382	ATPases associated with a variety of cellular activities
CH57_RS19175	SM01086	C-terminal, D2-small domain, of ClpB protein
CH57_RS19270	SM00382	ATPases associated with a variety of cellular activities
CH57_RS19290	SM00852	Probable molybdopterin binding domain
CH57_RS19300	SM00382	ATPases associated with a variety of cellular activities
CH57_RS19330	SM00829	Enoylreductase
CH57_RS19360	SM00382	ATPases associated with a variety of cellular activities
CH57_RS19375	SM00919	Malic enzyme, NAD binding domain
CH57_RS19375	SM01274	CH57_RS19375
CH57_RS19420	SM00382	ATPases associated with a variety of cellular activities
CH57_RS19430	SM01321	CH57_RS19430
CH57_RS19460	SM01091	Transporter associated domain
CH57_RS19480	SM01006	Siderophore biosynthesis protein domain
CH57_RS19490	SM00382	ATPases associated with a variety of cellular activities
CH57_RS19530	SM01350	CH57_RS19530
CH57_RS19590	SM00382	ATPases associated with a variety of cellular activities
CH57_RS19595	SM00382	ATPases associated with a variety of cellular activities
CH57_RS19635	SM00634	Bacterial Ig-like domain (group 1)
CH57_RS19660	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CH57_RS19705	SM00421	helix_turn_helix, Lux Regulon
CH57_RS19705	SM00448	cheY-homologous receiver domain
CH57_RS19780	SM00316	Ribosomal protein S1-like RNA-binding domain
CH57_RS19785	SM00363	S4 RNA-binding domain
CH57_RS19795	SM01321	CH57_RS19795
CH57_RS19825	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CH57_RS19830	SM00822	CH57_RS19830
CH57_RS19840	SM00825	Beta-ketoacyl synthase
CH57_RS19845	SM01321	CH57_RS19845
CH57_RS19880	SM01321	CH57_RS19880
CH57_RS19965	SM00487	DEAD-like helicases superfamily
CH57_RS19965	SM00490	helicase superfamily c-terminal domain
CH57_RS19965	SM00982	CH57_RS19965
CH57_RS19965	SM01058	CarD-like/TRCF domain
CH57_RS19975	SM00382	ATPases associated with a variety of cellular activities
CH57_RS20000	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CH57_RS20005	SM00387	Histidine kinase-like ATPases
CH57_RS20005	SM00388	His Kinase A (phosphoacceptor) domain
CH57_RS20010	SM00448	cheY-homologous receiver domain
CH57_RS20010	SM00862	Transcriptional regulatory protein, C terminal
CH57_RS20045	SM01329	CH57_RS20045
CH57_RS20050	SM00354	helix_turn _helix lactose operon repressor
CH57_RS20060	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CH57_RS20060	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CH57_RS20095	SM00344	helix_turn_helix ASNC type
CH57_RS20105	SM00829	Enoylreductase
CH57_RS20110	SM01038	Beta galactosidase small chain
CH57_RS20115	SM00357	Cold shock protein domain
CH57_RS20140	SM00831	Cation transporter/ATPase, N-terminus
CH57_RS20165	SM00073	Histidine Phosphotransfer domain
CH57_RS20165	SM00260	Two component signalling adaptor domain
CH57_RS20165	SM00387	Histidine kinase-like ATPases
CH57_RS20165	SM01231	CH57_RS20165
CH57_RS20170	SM00260	Two component signalling adaptor domain
CH57_RS20195	SM00869	Autotransporter beta-domain
CH57_RS20210	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CH57_RS20210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS20210	SM00319	Homologues of the ligand binding domain of Tar
CH57_RS20215	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CH57_RS20215	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CH57_RS20215	SM00319	Homologues of the ligand binding domain of Tar
CH57_RS20225	SM00138	Methyltransferase, chemotaxis proteins 
CH57_RS20230	SM00448	cheY-homologous receiver domain
CH57_RS20235	SM00448	cheY-homologous receiver domain
CH57_RS20250	SM00644	CH57_RS20250
CH57_RS20275	SM01005	Alanine racemase, C-terminal domain
CH57_RS20300	SM00382	ATPases associated with a variety of cellular activities
CH57_RS20310	SM01022	CH57_RS20310
CH57_RS20320	SM00972	Spore Coat Protein U domain
CH57_RS20335	SM00972	Spore Coat Protein U domain
CH57_RS20340	SM00972	Spore Coat Protein U domain
CH57_RS20345	SM00972	Spore Coat Protein U domain
CH57_RS20365	SM00945	ProQ/FINO family
CH57_RS20370	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CH57_RS20370	SM00245	tail specific protease
CH57_RS20415	SM00346	helix_turn_helix isocitrate lyase regulation
CH57_RS20420	SM00644	CH57_RS20420
CH57_RS20445	SM00382	ATPases associated with a variety of cellular activities
CH57_RS20485	SM00354	helix_turn _helix lactose operon repressor
CH57_RS20495	SM00382	ATPases associated with a variety of cellular activities
CH57_RS20525	SM00090	RIO-like kinase
CH57_RS20530	SM00382	ATPases associated with a variety of cellular activities
CH57_RS20540	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS20595	SM00357	Cold shock protein domain
CH57_RS20615	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CH57_RS20615	SM00091	PAS domain
CH57_RS20615	SM00267	diguanylate cyclase
CH57_RS20650	SM01091	Transporter associated domain
CH57_RS20655	SM00347	helix_turn_helix multiple antibiotic resistance protein
CH57_RS20705	SM00903	Flavin reductase like domain
CH57_RS20735	SM00487	DEAD-like helicases superfamily
CH57_RS20735	SM00490	helicase superfamily c-terminal domain
CH57_RS20745	SM01022	CH57_RS20745
CH57_RS20825	SM01321	CH57_RS20825
CH57_RS20830	SM00634	Bacterial Ig-like domain (group 1)
CH57_RS20845	SM00858	CH57_RS20845
CH57_RS20890	SM00047	Lysozyme subfamily 2
CH57_RS20910	SM01007	Class II Aldolase and Adducin N-terminal domain
CH57_RS20925	SM00382	ATPases associated with a variety of cellular activities
CH57_RS20995	SM00382	ATPases associated with a variety of cellular activities
CH57_RS21030	SM00478	endonuclease III
CH57_RS21045	SM00342	helix_turn_helix, arabinose operon control protein
CH57_RS21090	SM00062	Bacterial periplasmic substrate-binding proteins
CH57_RS21090	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CH57_RS21100	SM00382	ATPases associated with a variety of cellular activities
CH57_RS21185	SM00421	helix_turn_helix, Lux Regulon
CH57_RS21185	SM00448	cheY-homologous receiver domain
CH57_RS21190	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CH57_RS21190	SM00465	GIY-YIG type nucleases (URI domain)
CH57_RS21330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CH57_RS21330	SM00866	CH57_RS21330
