YPA_RS00010 SM00344 helix_turn_helix ASNC type YPA_RS00020 SM00327 von Willebrand factor (vWF) type A domain YPA_RS00025 SM00382 ATPases associated with a variety of cellular activities YPA_RS00035 SM00382 ATPases associated with a variety of cellular activities YPA_RS00065 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_RS00065 SM00895 YPA_RS00065 YPA_RS00130 SM00346 helix_turn_helix isocitrate lyase regulation YPA_RS00135 SM01018 B12 binding domain YPA_RS00140 SM00912 haemagglutination activity domain YPA_RS00185 SM00382 ATPases associated with a variety of cellular activities YPA_RS00240 SM01387 YPA_RS00240 YPA_RS00260 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_RS00260 SM00322 K homology RNA-binding domain YPA_RS00295 SM00382 ATPases associated with a variety of cellular activities YPA_RS00305 SM01103 YPA_RS00305 YPA_RS00320 SM00448 cheY-homologous receiver domain YPA_RS00320 SM00862 Transcriptional regulatory protein, C terminal YPA_RS00325 SM00387 Histidine kinase-like ATPases YPA_RS00325 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS00420 SM00116 Domain in cystathionine beta-synthase and other proteins. YPA_RS00420 SM01091 Transporter associated domain YPA_RS00465 SM01321 YPA_RS00465 YPA_RS00510 SM00382 ATPases associated with a variety of cellular activities YPA_RS00525 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPA_RS00555 SM00382 ATPases associated with a variety of cellular activities YPA_RS00660 SM00382 ATPases associated with a variety of cellular activities YPA_RS00685 SM00382 ATPases associated with a variety of cellular activities YPA_RS00765 SM00507 HNH nucleases YPA_RS00845 SM00487 DEAD-like helicases superfamily YPA_RS00845 SM00490 helicase superfamily c-terminal domain YPA_RS00855 SM00357 Cold shock protein domain YPA_RS00855 SM00382 ATPases associated with a variety of cellular activities YPA_RS00855 SM00959 Rho termination factor, N-terminal domain YPA_RS00875 SM00984 UDP binding domain YPA_RS00950 SM00382 ATPases associated with a variety of cellular activities YPA_RS00955 SM01321 YPA_RS00955 YPA_RS00990 SM01219 YPA_RS00990 YPA_RS01060 SM00341 Helicase and RNase D C-terminal YPA_RS01060 SM00487 DEAD-like helicases superfamily YPA_RS01060 SM00490 helicase superfamily c-terminal domain YPA_RS01060 SM00956 YPA_RS01060 YPA_RS01165 SM00382 ATPases associated with a variety of cellular activities YPA_RS01165 SM00962 SRP54-type protein, GTPase domain YPA_RS01165 SM00963 SRP54-type protein, helical bundle domain YPA_RS01170 SM00382 ATPases associated with a variety of cellular activities YPA_RS01190 SM01321 YPA_RS01190 YPA_RS01205 SM00382 ATPases associated with a variety of cellular activities YPA_RS01225 SM00382 ATPases associated with a variety of cellular activities YPA_RS01230 SM00382 ATPases associated with a variety of cellular activities YPA_RS01285 SM00382 ATPases associated with a variety of cellular activities YPA_RS01385 SM00382 ATPases associated with a variety of cellular activities YPA_RS01405 SM00382 ATPases associated with a variety of cellular activities YPA_RS01405 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_RS01420 SM00354 helix_turn _helix lactose operon repressor YPA_RS01430 SM00487 DEAD-like helicases superfamily YPA_RS01430 SM00490 helicase superfamily c-terminal domain YPA_RS01500 SM01006 Siderophore biosynthesis protein domain YPA_RS01530 SM00421 helix_turn_helix, Lux Regulon YPA_RS01595 SM00382 ATPases associated with a variety of cellular activities YPA_RS01595 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_RS01680 SM00382 ATPases associated with a variety of cellular activities YPA_RS01710 SM00478 endonuclease III YPA_RS01710 SM00525 YPA_RS01710 YPA_RS01745 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_RS01755 SM01152 YPA_RS01755 YPA_RS01775 SM00382 ATPases associated with a variety of cellular activities YPA_RS01790 SM00732 Likely ribonuclease with RNase H fold. YPA_RS01815 SM00731 SprT homologues. YPA_RS01830 SM01321 YPA_RS01830 YPA_RS01845 SM00861 Transketolase, pyrimidine binding domain YPA_RS01855 SM01321 YPA_RS01855 YPA_RS01860 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPA_RS01890 SM00382 ATPases associated with a variety of cellular activities YPA_RS01940 SM01011 Aminopeptidase P, N-terminal domain YPA_RS02015 SM00448 cheY-homologous receiver domain YPA_RS02015 SM00862 Transcriptional regulatory protein, C terminal YPA_RS02020 SM00387 Histidine kinase-like ATPases YPA_RS02020 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS02050 SM00937 YPA_RS02050 YPA_RS02070 SM00382 ATPases associated with a variety of cellular activities YPA_RS02100 SM00530 Helix-turn-helix XRE-family like proteins YPA_RS02110 SM00530 Helix-turn-helix XRE-family like proteins YPA_RS02115 SM00778 Zinc-binding domain of primase-helicase YPA_RS02115 SM00885 D5 N terminal like YPA_RS02230 SM00382 ATPases associated with a variety of cellular activities YPA_RS02235 SM00382 ATPases associated with a variety of cellular activities YPA_RS02275 SM00354 helix_turn _helix lactose operon repressor YPA_RS02290 SM00354 helix_turn _helix lactose operon repressor YPA_RS02370 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_RS02370 SM01134 YPA_RS02370 YPA_RS02380 SM01321 YPA_RS02380 YPA_RS02390 SM00382 ATPases associated with a variety of cellular activities YPA_RS02400 SM00869 Autotransporter beta-domain YPA_RS02420 SM00947 Carbonic anhydrase YPA_RS02440 SM00382 ATPases associated with a variety of cellular activities YPA_RS02500 SM00862 Transcriptional regulatory protein, C terminal YPA_RS02510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_RS02510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS02510 SM00319 Homologues of the ligand binding domain of Tar YPA_RS02520 SM00849 Metallo-beta-lactamase superfamily YPA_RS02545 SM00354 helix_turn _helix lactose operon repressor YPA_RS02555 SM00563 Phosphate acyltransferases YPA_RS02580 SM00927 DNA mismatch repair enzyme MutH YPA_RS02600 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YPA_RS02665 SM00646 YPA_RS02665 YPA_RS02680 SM00925 MltA specific insert domain YPA_RS02725 SM00382 ATPases associated with a variety of cellular activities YPA_RS02730 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPA_RS02730 SM00475 5'-3' exonuclease YPA_RS02755 SM01321 YPA_RS02755 YPA_RS02785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPA_RS02810 SM01321 YPA_RS02810 YPA_RS02840 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPA_RS02850 SM00935 Outer membrane protein (OmpH-like) YPA_RS02880 SM00481 DNA polymerase alpha chain like domain YPA_RS02895 SM00977 TilS substrate C-terminal domain YPA_RS02915 SM01322 YPA_RS02915 YPA_RS02955 SM00382 ATPases associated with a variety of cellular activities YPA_RS02955 SM00930 YPA_RS02955 YPA_RS03005 SM00257 Lysin motif YPA_RS03010 SM00849 Metallo-beta-lactamase superfamily YPA_RS03025 SM00479 YPA_RS03025 YPA_RS03050 SM00382 ATPases associated with a variety of cellular activities YPA_RS03080 SM00778 Zinc-binding domain of primase-helicase YPA_RS03130 SM01321 YPA_RS03130 YPA_RS03200 SM00861 Transketolase, pyrimidine binding domain YPA_RS03215 SM00881 CoA binding domain YPA_RS03310 SM00382 ATPases associated with a variety of cellular activities YPA_RS03320 SM00936 Penicillin-binding protein 5, C-terminal domain YPA_RS03335 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_RS03335 SM01134 YPA_RS03335 YPA_RS03340 SM01133 YPA_RS03340 YPA_RS03345 SM00014 Acid phosphatase homologues YPA_RS03385 SM00382 ATPases associated with a variety of cellular activities YPA_RS03410 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS03410 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPA_RS03425 SM00244 prohibitin homologues YPA_RS03440 SM00382 ATPases associated with a variety of cellular activities YPA_RS03475 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS03475 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPA_RS03480 SM00382 ATPases associated with a variety of cellular activities YPA_RS03485 SM00830 Chorismate mutase type II YPA_RS03545 SM00382 ATPases associated with a variety of cellular activities YPA_RS03550 SM00357 Cold shock protein domain YPA_RS03560 SM00382 ATPases associated with a variety of cellular activities YPA_RS03560 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_RS03565 SM01321 YPA_RS03565 YPA_RS03570 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_RS03580 SM00382 ATPases associated with a variety of cellular activities YPA_RS03585 SM00382 ATPases associated with a variety of cellular activities YPA_RS03600 SM00344 helix_turn_helix ASNC type YPA_RS03605 SM00843 YPA_RS03605 YPA_RS03615 SM00382 ATPases associated with a variety of cellular activities YPA_RS03655 SM00870 YPA_RS03655 YPA_RS03685 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_RS03690 SM00411 bacterial (prokaryotic) histone like domain YPA_RS03700 SM00849 Metallo-beta-lactamase superfamily YPA_RS03705 SM00382 ATPases associated with a variety of cellular activities YPA_RS03720 SM00382 ATPases associated with a variety of cellular activities YPA_RS03730 SM01150 YPA_RS03730 YPA_RS03735 SM00357 Cold shock protein domain YPA_RS03790 SM01321 YPA_RS03790 YPA_RS03805 SM00849 Metallo-beta-lactamase superfamily YPA_RS03850 SM00981 YPA_RS03850 YPA_RS03855 SM00382 ATPases associated with a variety of cellular activities YPA_RS03890 SM01321 YPA_RS03890 YPA_RS03895 SM00825 Beta-ketoacyl synthase YPA_RS03900 SM00382 ATPases associated with a variety of cellular activities YPA_RS03935 SM01321 YPA_RS03935 YPA_RS03975 SM00851 MGS-like domain YPA_RS03985 SM00881 CoA binding domain YPA_RS03990 SM00992 Hemimethylated DNA-binding protein YccV like YPA_RS03995 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPA_RS04055 SM00825 Beta-ketoacyl synthase YPA_RS04095 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPA_RS04110 SM00382 ATPases associated with a variety of cellular activities YPA_RS04145 SM00382 ATPases associated with a variety of cellular activities YPA_RS04145 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_RS04240 SM00382 ATPases associated with a variety of cellular activities YPA_RS04260 SM00852 Probable molybdopterin binding domain YPA_RS04270 SM00382 ATPases associated with a variety of cellular activities YPA_RS04300 SM00829 Enoylreductase YPA_RS04330 SM00382 ATPases associated with a variety of cellular activities YPA_RS04345 SM00919 Malic enzyme, NAD binding domain YPA_RS04345 SM01274 YPA_RS04345 YPA_RS04390 SM01321 YPA_RS04390 YPA_RS04420 SM01091 Transporter associated domain YPA_RS04440 SM01006 Siderophore biosynthesis protein domain YPA_RS04450 SM00382 ATPases associated with a variety of cellular activities YPA_RS04490 SM01350 YPA_RS04490 YPA_RS04550 SM00382 ATPases associated with a variety of cellular activities YPA_RS04555 SM00382 ATPases associated with a variety of cellular activities YPA_RS04595 SM00634 Bacterial Ig-like domain (group 1) YPA_RS04620 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPA_RS04665 SM00421 helix_turn_helix, Lux Regulon YPA_RS04665 SM00448 cheY-homologous receiver domain YPA_RS04715 SM00490 helicase superfamily c-terminal domain YPA_RS04725 SM01321 YPA_RS04725 YPA_RS04755 SM01118 YPA_RS04755 YPA_RS04760 SM00507 HNH nucleases YPA_RS04775 SM00382 ATPases associated with a variety of cellular activities YPA_RS04820 SM00382 ATPases associated with a variety of cellular activities YPA_RS04835 SM00450 Rhodanese Homology Domain YPA_RS04855 SM00382 ATPases associated with a variety of cellular activities YPA_RS04890 SM00382 ATPases associated with a variety of cellular activities YPA_RS04900 SM00487 DEAD-like helicases superfamily YPA_RS04900 SM00488 YPA_RS04900 YPA_RS04900 SM00491 YPA_RS04900 YPA_RS04905 SM01060 YPA_RS04905 YPA_RS04920 SM00852 Probable molybdopterin binding domain YPA_RS04950 SM00434 DNA Topoisomerase IV YPA_RS04960 SM00387 Histidine kinase-like ATPases YPA_RS04960 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS04960 SM00448 cheY-homologous receiver domain YPA_RS04965 SM00421 helix_turn_helix, Lux Regulon YPA_RS04965 SM00448 cheY-homologous receiver domain YPA_RS05030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_RS05030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS05045 SM00530 Helix-turn-helix XRE-family like proteins YPA_RS05065 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_RS05065 SM01134 YPA_RS05065 YPA_RS05185 SM00382 ATPases associated with a variety of cellular activities YPA_RS05220 SM01321 YPA_RS05220 YPA_RS05230 SM00487 DEAD-like helicases superfamily YPA_RS05230 SM00490 helicase superfamily c-terminal domain YPA_RS05235 SM00363 S4 RNA-binding domain YPA_RS05250 SM00382 ATPases associated with a variety of cellular activities YPA_RS05270 SM00052 Putative diguanylate phosphodiesterase YPA_RS05280 SM00014 Acid phosphatase homologues YPA_RS05285 SM00833 Cobalamin synthesis protein cobW C-terminal domain YPA_RS05295 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_RS05295 SM00895 YPA_RS05295 YPA_RS05310 SM00841 Elongation factor P, C-terminal YPA_RS05310 SM01185 YPA_RS05310 YPA_RS05370 SM00382 ATPases associated with a variety of cellular activities YPA_RS05400 SM00862 Transcriptional regulatory protein, C terminal YPA_RS05425 SM00518 AP endonuclease family 2 YPA_RS05455 SM00382 ATPases associated with a variety of cellular activities YPA_RS05485 SM00382 ATPases associated with a variety of cellular activities YPA_RS05485 SM00930 YPA_RS05485 YPA_RS05500 SM00382 ATPases associated with a variety of cellular activities YPA_RS05515 SM00855 Phosphoglycerate mutase family YPA_RS05560 SM00382 ATPases associated with a variety of cellular activities YPA_RS05585 SM00382 ATPases associated with a variety of cellular activities YPA_RS05605 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_RS05605 SM00876 Biotin and Thiamin Synthesis associated domain YPA_RS05625 SM00382 ATPases associated with a variety of cellular activities YPA_RS05630 SM00487 DEAD-like helicases superfamily YPA_RS05630 SM00490 helicase superfamily c-terminal domain YPA_RS05650 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_RS05680 SM01321 YPA_RS05680 YPA_RS05725 SM01321 YPA_RS05725 YPA_RS05740 SM00091 PAS domain YPA_RS05740 SM00387 Histidine kinase-like ATPases YPA_RS05740 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS05745 SM00382 ATPases associated with a variety of cellular activities YPA_RS05745 SM00448 cheY-homologous receiver domain YPA_RS05780 SM00382 ATPases associated with a variety of cellular activities YPA_RS05795 SM00487 DEAD-like helicases superfamily YPA_RS05795 SM00490 helicase superfamily c-terminal domain YPA_RS05835 SM00354 helix_turn _helix lactose operon repressor YPA_RS05845 SM00382 ATPases associated with a variety of cellular activities YPA_RS05875 SM00090 RIO-like kinase YPA_RS05880 SM00382 ATPases associated with a variety of cellular activities YPA_RS05890 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS05945 SM00357 Cold shock protein domain YPA_RS05965 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPA_RS05965 SM00091 PAS domain YPA_RS05965 SM00267 diguanylate cyclase YPA_RS06000 SM01091 Transporter associated domain YPA_RS06005 SM00347 helix_turn_helix multiple antibiotic resistance protein YPA_RS06085 SM00487 DEAD-like helicases superfamily YPA_RS06085 SM00490 helicase superfamily c-terminal domain YPA_RS06095 SM01022 YPA_RS06095 YPA_RS06115 SM00382 ATPases associated with a variety of cellular activities YPA_RS06185 SM01321 YPA_RS06185 YPA_RS06190 SM00634 Bacterial Ig-like domain (group 1) YPA_RS06205 SM00858 YPA_RS06205 YPA_RS06250 SM00047 Lysozyme subfamily 2 YPA_RS06270 SM01007 Class II Aldolase and Adducin N-terminal domain YPA_RS06285 SM00382 ATPases associated with a variety of cellular activities YPA_RS06355 SM00382 ATPases associated with a variety of cellular activities YPA_RS06390 SM00478 endonuclease III YPA_RS06405 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS06450 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS06450 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPA_RS06460 SM00382 ATPases associated with a variety of cellular activities YPA_RS06475 SM00382 ATPases associated with a variety of cellular activities YPA_RS06560 SM00421 helix_turn_helix, Lux Regulon YPA_RS06560 SM00448 cheY-homologous receiver domain YPA_RS06565 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPA_RS06565 SM00465 GIY-YIG type nucleases (URI domain) YPA_RS06700 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_RS06700 SM00866 YPA_RS06700 YPA_RS06730 SM00382 ATPases associated with a variety of cellular activities YPA_RS06765 SM00382 ATPases associated with a variety of cellular activities YPA_RS06820 SM00822 YPA_RS06820 YPA_RS06820 SM00823 Phosphopantetheine attachment site YPA_RS06820 SM00824 Thioesterase YPA_RS06820 SM00825 Beta-ketoacyl synthase YPA_RS06820 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPA_RS06825 SM00823 Phosphopantetheine attachment site YPA_RS06830 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS06835 SM00382 ATPases associated with a variety of cellular activities YPA_RS06840 SM00382 ATPases associated with a variety of cellular activities YPA_RS06890 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS06890 SM00387 Histidine kinase-like ATPases YPA_RS06890 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS06890 SM00448 cheY-homologous receiver domain YPA_RS06895 SM00421 helix_turn_helix, Lux Regulon YPA_RS06895 SM00448 cheY-homologous receiver domain YPA_RS06980 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_RS06980 SM01134 YPA_RS06980 YPA_RS07020 SM00382 ATPases associated with a variety of cellular activities YPA_RS07085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS07085 SM00387 Histidine kinase-like ATPases YPA_RS07090 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_RS07135 SM00382 ATPases associated with a variety of cellular activities YPA_RS07150 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_RS07150 SM00866 YPA_RS07150 YPA_RS07230 SM00671 Sel1-like repeats. YPA_RS07235 SM00671 Sel1-like repeats. YPA_RS07290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS07290 SM00387 Histidine kinase-like ATPases YPA_RS07290 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS07295 SM00448 cheY-homologous receiver domain YPA_RS07295 SM00862 Transcriptional regulatory protein, C terminal YPA_RS07330 SM00450 Rhodanese Homology Domain YPA_RS07365 SM01400 YPA_RS07365 YPA_RS07390 SM00937 YPA_RS07390 YPA_RS07420 SM00382 ATPases associated with a variety of cellular activities YPA_RS07470 SM01321 YPA_RS07470 YPA_RS07495 SM00481 DNA polymerase alpha chain like domain YPA_RS07535 SM00912 haemagglutination activity domain YPA_RS07540 SM00836 DALR anticodon binding domain YPA_RS07540 SM01016 Arginyl tRNA synthetase N terminal dom YPA_RS07595 SM01321 YPA_RS07595 YPA_RS07600 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPA_RS07605 SM00382 ATPases associated with a variety of cellular activities YPA_RS07615 SM00382 ATPases associated with a variety of cellular activities YPA_RS07625 SM00257 Lysin motif YPA_RS07675 SM00487 DEAD-like helicases superfamily YPA_RS07675 SM00491 YPA_RS07675 YPA_RS07695 SM00341 Helicase and RNase D C-terminal YPA_RS07695 SM00474 3'-5' exonuclease YPA_RS07745 SM00382 ATPases associated with a variety of cellular activities YPA_RS07760 SM00635 Bacterial Ig-like domain 2 YPA_RS07790 SM00635 Bacterial Ig-like domain 2 YPA_RS07820 SM01321 YPA_RS07820 YPA_RS07830 SM00232 JAB/MPN domain YPA_RS07850 SM01040 BRO family, N-terminal domain YPA_RS07880 SM00060 Fibronectin type 3 domain YPA_RS07940 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_RS07980 SM00763 PrkA AAA domain YPA_RS07995 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPA_RS08015 SM00870 YPA_RS08015 YPA_RS08035 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPA_RS08035 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPA_RS08035 SM00493 YPA_RS08035 YPA_RS08080 SM00448 cheY-homologous receiver domain YPA_RS08085 SM00984 UDP binding domain YPA_RS08090 SM00528 Domain in histone-like proteins of HNS family YPA_RS08100 SM00382 ATPases associated with a variety of cellular activities YPA_RS08135 SM00382 ATPases associated with a variety of cellular activities YPA_RS08140 SM00382 ATPases associated with a variety of cellular activities YPA_RS08155 SM00155 Phospholipase D. Active site motifs. YPA_RS08225 SM00749 bacterial OsmY and nodulation domain YPA_RS08270 SM00481 DNA polymerase alpha chain like domain YPA_RS08280 SM00363 S4 RNA-binding domain YPA_RS08290 SM00822 YPA_RS08290 YPA_RS08310 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPA_RS08310 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPA_RS08310 SM00493 YPA_RS08310 YPA_RS08335 SM00014 Acid phosphatase homologues YPA_RS08345 SM00028 Tetratricopeptide repeats YPA_RS08360 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YPA_RS08375 SM01007 Class II Aldolase and Adducin N-terminal domain YPA_RS08400 SM00357 Cold shock protein domain YPA_RS08400 SM00955 YPA_RS08400 YPA_RS08415 SM00478 endonuclease III YPA_RS08415 SM00525 YPA_RS08415 YPA_RS08425 SM00900 YPA_RS08425 YPA_RS08435 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS08480 SM00382 ATPases associated with a variety of cellular activities YPA_RS08500 SM00382 ATPases associated with a variety of cellular activities YPA_RS08510 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS08580 SM00382 ATPases associated with a variety of cellular activities YPA_RS08650 SM00098 Alkaline phosphatase homologues YPA_RS08660 SM00100 Cyclic nucleotide-monophosphate binding domain YPA_RS08660 SM00419 helix_turn_helix, cAMP Regulatory protein YPA_RS08675 SM01002 Alanine dehydrogenase/PNT, C-terminal domain YPA_RS08675 SM01003 Alanine dehydrogenase/PNT, N-terminal domain YPA_RS08700 SM00448 cheY-homologous receiver domain YPA_RS08700 SM00862 Transcriptional regulatory protein, C terminal YPA_RS08705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS08705 SM00387 Histidine kinase-like ATPases YPA_RS08705 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS08715 SM01321 YPA_RS08715 YPA_RS08740 SM00867 YceI-like domain YPA_RS08760 SM00020 Trypsin-like serine protease YPA_RS08765 SM00530 Helix-turn-helix XRE-family like proteins YPA_RS08785 SM00382 ATPases associated with a variety of cellular activities YPA_RS08790 SM00382 ATPases associated with a variety of cellular activities YPA_RS08790 SM00487 DEAD-like helicases superfamily YPA_RS08790 SM00490 helicase superfamily c-terminal domain YPA_RS08790 SM00847 Helicase associated domain (HA2) Add an annotation YPA_RS08850 SM00890 Domain of unknown function YPA_RS08865 SM00422 helix_turn_helix, mercury resistance YPA_RS08885 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPA_RS08895 SM01321 YPA_RS08895 YPA_RS08900 SM00091 PAS domain YPA_RS08900 SM00382 ATPases associated with a variety of cellular activities YPA_RS08910 SM00953 YPA_RS08910 YPA_RS08945 SM00382 ATPases associated with a variety of cellular activities YPA_RS08950 SM01321 YPA_RS08950 YPA_RS08980 SM00382 ATPases associated with a variety of cellular activities YPA_RS08985 SM00382 ATPases associated with a variety of cellular activities YPA_RS09020 SM00363 S4 RNA-binding domain YPA_RS09045 SM00347 helix_turn_helix multiple antibiotic resistance protein YPA_RS09085 SM00479 YPA_RS09085 YPA_RS09110 SM00354 helix_turn _helix lactose operon repressor YPA_RS09170 SM00382 ATPases associated with a variety of cellular activities YPA_RS09195 SM00382 ATPases associated with a variety of cellular activities YPA_RS09295 SM00382 ATPases associated with a variety of cellular activities YPA_RS09315 SM00411 bacterial (prokaryotic) histone like domain YPA_RS09320 SM00873 B3/4 domain YPA_RS09320 SM00874 tRNA synthetase B5 domain YPA_RS09320 SM00896 Ferredoxin-fold anticodon binding domain YPA_RS09345 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPA_RS09380 SM00382 ATPases associated with a variety of cellular activities YPA_RS09440 SM00382 ATPases associated with a variety of cellular activities YPA_RS09465 SM00382 ATPases associated with a variety of cellular activities YPA_RS09490 SM00644 YPA_RS09490 YPA_RS09495 SM00346 helix_turn_helix isocitrate lyase regulation YPA_RS09540 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPA_RS09540 SM00245 tail specific protease YPA_RS09545 SM00945 ProQ/FINO family YPA_RS09565 SM00972 Spore Coat Protein U domain YPA_RS09570 SM00972 Spore Coat Protein U domain YPA_RS09575 SM00972 Spore Coat Protein U domain YPA_RS09590 SM00972 Spore Coat Protein U domain YPA_RS09610 SM00382 ATPases associated with a variety of cellular activities YPA_RS09635 SM01005 Alanine racemase, C-terminal domain YPA_RS09655 SM00644 YPA_RS09655 YPA_RS09670 SM00448 cheY-homologous receiver domain YPA_RS09675 SM00448 cheY-homologous receiver domain YPA_RS09680 SM00138 Methyltransferase, chemotaxis proteins YPA_RS09685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_RS09685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS09685 SM00319 Homologues of the ligand binding domain of Tar YPA_RS09690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_RS09690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS09690 SM00319 Homologues of the ligand binding domain of Tar YPA_RS09705 SM00869 Autotransporter beta-domain YPA_RS09730 SM00260 Two component signalling adaptor domain YPA_RS09735 SM00073 Histidine Phosphotransfer domain YPA_RS09735 SM00260 Two component signalling adaptor domain YPA_RS09735 SM00387 Histidine kinase-like ATPases YPA_RS09735 SM01231 YPA_RS09735 YPA_RS09760 SM00831 Cation transporter/ATPase, N-terminus YPA_RS09785 SM00357 Cold shock protein domain YPA_RS09790 SM00382 ATPases associated with a variety of cellular activities YPA_RS09800 SM01038 Beta galactosidase small chain YPA_RS09805 SM00829 Enoylreductase YPA_RS09815 SM00344 helix_turn_helix ASNC type YPA_RS09850 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPA_RS09850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_RS09860 SM00354 helix_turn _helix lactose operon repressor YPA_RS09865 SM01329 YPA_RS09865 YPA_RS09900 SM00448 cheY-homologous receiver domain YPA_RS09900 SM00862 Transcriptional regulatory protein, C terminal YPA_RS09905 SM00387 Histidine kinase-like ATPases YPA_RS09905 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS09910 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YPA_RS09935 SM00382 ATPases associated with a variety of cellular activities YPA_RS09945 SM00487 DEAD-like helicases superfamily YPA_RS09945 SM00490 helicase superfamily c-terminal domain YPA_RS09945 SM00982 YPA_RS09945 YPA_RS09945 SM01058 CarD-like/TRCF domain YPA_RS10010 SM00382 ATPases associated with a variety of cellular activities YPA_RS10020 SM01321 YPA_RS10020 YPA_RS10055 SM01321 YPA_RS10055 YPA_RS10060 SM00825 Beta-ketoacyl synthase YPA_RS10070 SM00822 YPA_RS10070 YPA_RS10075 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPA_RS10105 SM01321 YPA_RS10105 YPA_RS10110 SM00363 S4 RNA-binding domain YPA_RS10115 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_RS10170 SM00421 helix_turn_helix, Lux Regulon YPA_RS10210 SM00421 helix_turn_helix, Lux Regulon YPA_RS10310 SM00354 helix_turn _helix lactose operon repressor YPA_RS10320 SM00382 ATPases associated with a variety of cellular activities YPA_RS10370 SM00912 haemagglutination activity domain YPA_RS10400 SM01329 YPA_RS10400 YPA_RS10410 SM00354 helix_turn _helix lactose operon repressor YPA_RS10420 SM00382 ATPases associated with a variety of cellular activities YPA_RS10460 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS10460 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPA_RS10470 SM00382 ATPases associated with a variety of cellular activities YPA_RS10475 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPA_RS10475 SM00091 PAS domain YPA_RS10475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_RS10485 SM00382 ATPases associated with a variety of cellular activities YPA_RS10515 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPA_RS10585 SM00354 helix_turn _helix lactose operon repressor YPA_RS10650 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_RS10650 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPA_RS10655 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPA_RS10695 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPA_RS10740 SM00354 helix_turn _helix lactose operon repressor YPA_RS10770 SM00052 Putative diguanylate phosphodiesterase YPA_RS10780 SM00382 ATPases associated with a variety of cellular activities YPA_RS10795 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS10805 SM00382 ATPases associated with a variety of cellular activities YPA_RS10850 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPA_RS10860 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS10890 SM00825 Beta-ketoacyl synthase YPA_RS10930 SM00463 Small MutS-related domain YPA_RS10940 SM00855 Phosphoglycerate mutase family YPA_RS11010 SM00382 ATPases associated with a variety of cellular activities YPA_RS11080 SM00382 ATPases associated with a variety of cellular activities YPA_RS11150 SM00382 ATPases associated with a variety of cellular activities YPA_RS11150 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_RS11195 SM00421 helix_turn_helix, Lux Regulon YPA_RS11215 SM00382 ATPases associated with a variety of cellular activities YPA_RS11235 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_RS11350 SM01321 YPA_RS11350 YPA_RS11375 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPA_RS11375 SM00292 breast cancer carboxy-terminal domain YPA_RS11375 SM00532 Ligase N family YPA_RS11380 SM00771 ZipA, C-terminal domain (FtsZ-binding) YPA_RS11410 SM01321 YPA_RS11410 YPA_RS11420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS11420 SM00387 Histidine kinase-like ATPases YPA_RS11420 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS11425 SM00448 cheY-homologous receiver domain YPA_RS11425 SM00862 Transcriptional regulatory protein, C terminal YPA_RS11435 SM00382 ATPases associated with a variety of cellular activities YPA_RS11440 SM00450 Rhodanese Homology Domain YPA_RS11470 SM00327 von Willebrand factor (vWF) type A domain YPA_RS11475 SM00387 Histidine kinase-like ATPases YPA_RS11475 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS11480 SM00448 cheY-homologous receiver domain YPA_RS11480 SM00862 Transcriptional regulatory protein, C terminal YPA_RS11495 SM00382 ATPases associated with a variety of cellular activities YPA_RS11540 SM00364 Leucine-rich repeats, bacterial type YPA_RS11550 SM01130 YPA_RS11550 YPA_RS11570 SM00869 Autotransporter beta-domain YPA_RS11600 SM00919 Malic enzyme, NAD binding domain YPA_RS11600 SM01274 YPA_RS11600 YPA_RS11610 SM00382 ATPases associated with a variety of cellular activities YPA_RS11635 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_RS11650 SM00421 helix_turn_helix, Lux Regulon YPA_RS11650 SM00448 cheY-homologous receiver domain YPA_RS11685 SM00382 ATPases associated with a variety of cellular activities YPA_RS11745 SM01321 YPA_RS11745 YPA_RS11755 SM01130 YPA_RS11755 YPA_RS11805 SM01321 YPA_RS11805 YPA_RS11840 SM00382 ATPases associated with a variety of cellular activities YPA_RS11870 SM00924 MgtE intracellular N domain YPA_RS11885 SM00382 ATPases associated with a variety of cellular activities YPA_RS11910 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_RS11915 SM00382 ATPases associated with a variety of cellular activities YPA_RS11940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS11940 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS11945 SM00387 Histidine kinase-like ATPases YPA_RS11950 SM00448 cheY-homologous receiver domain YPA_RS11950 SM00862 Transcriptional regulatory protein, C terminal YPA_RS11965 SM00046 Diacylglycerol kinase catalytic domain (presumed) YPA_RS12050 SM00116 Domain in cystathionine beta-synthase and other proteins. YPA_RS12050 SM01240 YPA_RS12050 YPA_RS12075 SM00564 beta-propeller repeat YPA_RS12095 SM00530 Helix-turn-helix XRE-family like proteins YPA_RS12100 SM00028 Tetratricopeptide repeats YPA_RS12110 SM00562 YPA_RS12110 YPA_RS12115 SM00247 Beta/gamma crystallins YPA_RS12125 SM00869 Autotransporter beta-domain YPA_RS12165 SM00271 DnaJ molecular chaperone homology domain YPA_RS12250 SM00938 Nitrogen regulatory protein P-II YPA_RS12260 SM00382 ATPases associated with a variety of cellular activities YPA_RS12260 SM00448 cheY-homologous receiver domain YPA_RS12270 SM00387 Histidine kinase-like ATPases YPA_RS12270 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS12275 SM01321 YPA_RS12275 YPA_RS12295 SM01211 YPA_RS12295 YPA_RS12300 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS12330 SM01321 YPA_RS12330 YPA_RS12350 SM00382 ATPases associated with a variety of cellular activities YPA_RS12375 SM00382 ATPases associated with a variety of cellular activities YPA_RS12430 SM00357 Cold shock protein domain YPA_RS12450 SM00382 ATPases associated with a variety of cellular activities YPA_RS12455 SM00382 ATPases associated with a variety of cellular activities YPA_RS12475 SM00988 UreE urease accessory protein, N-terminal domain YPA_RS12550 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS12600 SM00448 cheY-homologous receiver domain YPA_RS12600 SM00862 Transcriptional regulatory protein, C terminal YPA_RS12605 SM00387 Histidine kinase-like ATPases YPA_RS12605 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS12665 SM00797 Allophanate hydrolase subunit 2 YPA_RS12690 SM00986 Uracil DNA glycosylase superfamily YPA_RS12690 SM00987 UreE urease accessory protein, C-terminal domain YPA_RS12710 SM00248 ankyrin repeats YPA_RS12715 SM00487 DEAD-like helicases superfamily YPA_RS12715 SM00490 helicase superfamily c-terminal domain YPA_RS12765 SM00358 Double-stranded RNA binding motif YPA_RS12765 SM00535 Ribonuclease III family YPA_RS12785 SM00382 ATPases associated with a variety of cellular activities YPA_RS12850 SM01321 YPA_RS12850 YPA_RS12930 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_RS12945 SM00116 Domain in cystathionine beta-synthase and other proteins. YPA_RS12945 SM01091 Transporter associated domain YPA_RS12955 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS12970 SM00382 ATPases associated with a variety of cellular activities YPA_RS13030 SM00382 ATPases associated with a variety of cellular activities YPA_RS13035 SM00936 Penicillin-binding protein 5, C-terminal domain YPA_RS13050 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_RS13070 SM00357 Cold shock protein domain YPA_RS13080 SM00421 helix_turn_helix, Lux Regulon YPA_RS13105 SM00382 ATPases associated with a variety of cellular activities YPA_RS13140 SM00382 ATPases associated with a variety of cellular activities YPA_RS13180 SM01359 YPA_RS13180 YPA_RS13180 SM01360 YPA_RS13180 YPA_RS13235 SM00869 Autotransporter beta-domain YPA_RS13265 SM01217 YPA_RS13265 YPA_RS13305 SM00382 ATPases associated with a variety of cellular activities YPA_RS13320 SM00195 Dual specificity phosphatase, catalytic domain YPA_RS13320 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPA_RS13330 SM00563 Phosphate acyltransferases YPA_RS13395 SM01321 YPA_RS13395 YPA_RS13405 SM00840 YPA_RS13405 YPA_RS13420 SM01001 AIR carboxylase YPA_RS13435 SM00382 ATPases associated with a variety of cellular activities YPA_RS13445 SM00822 YPA_RS13445 YPA_RS13455 SM00244 prohibitin homologues YPA_RS13465 SM00422 helix_turn_helix, mercury resistance YPA_RS13625 SM00387 Histidine kinase-like ATPases YPA_RS13630 SM00493 YPA_RS13630 YPA_RS13640 SM00382 ATPases associated with a variety of cellular activities YPA_RS13675 SM00382 ATPases associated with a variety of cellular activities YPA_RS13750 SM00938 Nitrogen regulatory protein P-II YPA_RS13755 SM00382 ATPases associated with a variety of cellular activities YPA_RS13760 SM00382 ATPases associated with a variety of cellular activities YPA_RS13765 SM00344 helix_turn_helix ASNC type YPA_RS13805 SM00411 bacterial (prokaryotic) histone like domain YPA_RS13810 SM00382 ATPases associated with a variety of cellular activities YPA_RS13810 SM00464 Found in ATP-dependent protease La (LON) YPA_RS13815 SM00382 ATPases associated with a variety of cellular activities YPA_RS13815 SM00994 ClpX C4-type zinc finger YPA_RS13815 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_RS13900 SM00981 YPA_RS13900 YPA_RS13920 SM00861 Transketolase, pyrimidine binding domain YPA_RS13925 SM01321 YPA_RS13925 YPA_RS13975 SM01321 YPA_RS13975 YPA_RS13985 SM01321 YPA_RS13985 YPA_RS14000 SM01323 YPA_RS14000 YPA_RS14045 SM00642 Alpha-amylase domain YPA_RS14065 SM00091 PAS domain YPA_RS14065 SM00387 Histidine kinase-like ATPases YPA_RS14065 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS14070 SM00448 cheY-homologous receiver domain YPA_RS14070 SM00862 Transcriptional regulatory protein, C terminal YPA_RS14095 SM00382 ATPases associated with a variety of cellular activities YPA_RS14160 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPA_RS14185 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins YPA_RS14240 SM00900 YPA_RS14240 YPA_RS14285 SM00710 Parallel beta-helix repeats YPA_RS14285 SM00912 haemagglutination activity domain YPA_RS14310 SM00382 ATPases associated with a variety of cellular activities YPA_RS14320 SM00382 ATPases associated with a variety of cellular activities YPA_RS14335 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS14380 SM00347 helix_turn_helix multiple antibiotic resistance protein YPA_RS14395 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPA_RS14405 SM01144 YPA_RS14405 YPA_RS14410 SM00881 CoA binding domain YPA_RS14415 SM00155 Phospholipase D. Active site motifs. YPA_RS14455 SM00382 ATPases associated with a variety of cellular activities YPA_RS14455 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_RS14465 SM00363 S4 RNA-binding domain YPA_RS14480 SM01321 YPA_RS14480 YPA_RS14490 SM01321 YPA_RS14490 YPA_RS14500 SM00830 Chorismate mutase type II YPA_RS14510 SM00382 ATPases associated with a variety of cellular activities YPA_RS14570 SM00257 Lysin motif YPA_RS14580 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YPA_RS14580 SM00534 ATPase domain of DNA mismatch repair MUTS family YPA_RS14595 SM00829 Enoylreductase YPA_RS14610 SM01120 YPA_RS14610 YPA_RS14625 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YPA_RS14640 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS14645 SM01235 YPA_RS14645 YPA_RS14710 SM00382 ATPases associated with a variety of cellular activities YPA_RS14715 SM01321 YPA_RS14715 YPA_RS14725 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_RS14725 SM01134 YPA_RS14725 YPA_RS14730 SM01007 Class II Aldolase and Adducin N-terminal domain YPA_RS14735 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_RS14780 SM00382 ATPases associated with a variety of cellular activities YPA_RS14795 SM00861 Transketolase, pyrimidine binding domain YPA_RS14825 SM00382 ATPases associated with a variety of cellular activities YPA_RS14835 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPA_RS14865 SM01321 YPA_RS14865 YPA_RS14870 SM01091 Transporter associated domain YPA_RS14880 SM00382 ATPases associated with a variety of cellular activities YPA_RS14880 SM00962 SRP54-type protein, GTPase domain YPA_RS14880 SM00963 SRP54-type protein, helical bundle domain YPA_RS14905 SM01321 YPA_RS14905 YPA_RS14930 SM00448 cheY-homologous receiver domain YPA_RS14930 SM00850 LytTr DNA-binding domain YPA_RS14940 SM00830 Chorismate mutase type II YPA_RS14950 SM00382 ATPases associated with a variety of cellular activities YPA_RS15010 SM01192 YPA_RS15010 YPA_RS15010 SM01193 YPA_RS15010 YPA_RS15030 SM00954 Region found in RelA / SpoT proteins YPA_RS15035 SM00073 Histidine Phosphotransfer domain YPA_RS15035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS15035 SM00387 Histidine kinase-like ATPases YPA_RS15035 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS15035 SM00448 cheY-homologous receiver domain YPA_RS15040 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPA_RS15045 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPA_RS15095 SM00382 ATPases associated with a variety of cellular activities YPA_RS15105 SM00487 DEAD-like helicases superfamily YPA_RS15105 SM00490 helicase superfamily c-terminal domain YPA_RS15105 SM00847 Helicase associated domain (HA2) Add an annotation YPA_RS15165 SM00382 ATPases associated with a variety of cellular activities YPA_RS15170 SM00947 Carbonic anhydrase YPA_RS15215 SM01321 YPA_RS15215 YPA_RS15240 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_RS15240 SM00895 YPA_RS15240 YPA_RS15255 SM00644 YPA_RS15255 YPA_RS15280 SM01240 YPA_RS15280 YPA_RS15305 SM01321 YPA_RS15305 YPA_RS15315 SM00382 ATPases associated with a variety of cellular activities YPA_RS15400 SM00382 ATPases associated with a variety of cellular activities YPA_RS15405 SM00382 ATPases associated with a variety of cellular activities YPA_RS15420 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_RS15420 SM00866 YPA_RS15420 YPA_RS15445 SM00382 ATPases associated with a variety of cellular activities YPA_RS15450 SM00382 ATPases associated with a variety of cellular activities YPA_RS15460 SM00072 Guanylate kinase homologues. YPA_RS15465 SM00849 Metallo-beta-lactamase superfamily YPA_RS15470 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPA_RS15485 SM00382 ATPases associated with a variety of cellular activities YPA_RS15565 SM00530 Helix-turn-helix XRE-family like proteins YPA_RS15580 SM00487 DEAD-like helicases superfamily YPA_RS15580 SM00490 helicase superfamily c-terminal domain YPA_RS15585 SM00028 Tetratricopeptide repeats YPA_RS15590 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_RS15590 SM00322 K homology RNA-binding domain YPA_RS15655 SM00642 Alpha-amylase domain YPA_RS15730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_RS15735 SM00382 ATPases associated with a variety of cellular activities YPA_RS15760 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_RS15920 SM00862 Transcriptional regulatory protein, C terminal YPA_RS15990 SM00858 YPA_RS15990 YPA_RS16010 SM00382 ATPases associated with a variety of cellular activities YPA_RS16030 SM00382 ATPases associated with a variety of cellular activities YPA_RS16050 SM00382 ATPases associated with a variety of cellular activities YPA_RS16120 SM01321 YPA_RS16120 YPA_RS16210 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS16240 SM00563 Phosphate acyltransferases YPA_RS16245 SM00434 DNA Topoisomerase IV YPA_RS16265 SM00387 Histidine kinase-like ATPases YPA_RS16265 SM00433 TopoisomeraseII YPA_RS16345 SM01118 YPA_RS16345 YPA_RS16350 SM00287 Bacterial SH3 domain homologues YPA_RS16355 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPA_RS16365 SM00905 Dihydroneopterin aldolase YPA_RS16370 SM01207 YPA_RS16370 YPA_RS16385 SM00400 zinc finger YPA_RS16385 SM00493 YPA_RS16385 YPA_RS16385 SM00766 DNA primase DnaG DnaB-binding YPA_RS16430 SM00382 ATPases associated with a variety of cellular activities YPA_RS16535 SM01217 YPA_RS16535 YPA_RS16560 SM00354 helix_turn _helix lactose operon repressor YPA_RS16570 SM00382 ATPases associated with a variety of cellular activities YPA_RS16585 SM00869 Autotransporter beta-domain YPA_RS16620 SM00912 haemagglutination activity domain YPA_RS16630 SM00327 von Willebrand factor (vWF) type A domain YPA_RS16640 SM00327 von Willebrand factor (vWF) type A domain YPA_RS16645 SM00327 von Willebrand factor (vWF) type A domain YPA_RS16655 SM00220 Serine/Threonine protein kinases, catalytic domain YPA_RS16680 SM00869 Autotransporter beta-domain YPA_RS16700 SM01321 YPA_RS16700 YPA_RS16710 SM00858 YPA_RS16710 YPA_RS16735 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_RS16735 SM00895 YPA_RS16735 YPA_RS16795 SM00382 ATPases associated with a variety of cellular activities YPA_RS16860 SM00422 helix_turn_helix, mercury resistance YPA_RS16870 SM00662 RNA polymerases D YPA_RS16875 SM00363 S4 RNA-binding domain YPA_RS16875 SM01390 YPA_RS16875 YPA_RS16940 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPA_RS16945 SM01374 YPA_RS16945 YPA_RS16965 SM00322 K homology RNA-binding domain YPA_RS16980 SM01382 YPA_RS16980 YPA_RS16980 SM01383 YPA_RS16980 YPA_RS17000 SM01403 YPA_RS17000 YPA_RS17020 SM00382 ATPases associated with a variety of cellular activities YPA_RS17025 SM01321 YPA_RS17025 YPA_RS17035 SM00838 Elongation factor G C-terminus YPA_RS17035 SM00889 Elongation factor G, domain IV YPA_RS17125 SM00382 ATPases associated with a variety of cellular activities YPA_RS17130 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS17165 SM00100 Cyclic nucleotide-monophosphate binding domain YPA_RS17165 SM00419 helix_turn_helix, cAMP Regulatory protein YPA_RS17200 SM00354 helix_turn _helix lactose operon repressor YPA_RS17330 SM00363 S4 RNA-binding domain YPA_RS17345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS17345 SM00387 Histidine kinase-like ATPases YPA_RS17345 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS17350 SM00448 cheY-homologous receiver domain YPA_RS17350 SM00862 Transcriptional regulatory protein, C terminal YPA_RS17360 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_RS17360 SM00732 Likely ribonuclease with RNase H fold. YPA_RS17370 SM00899 YPA_RS17370 YPA_RS17420 SM00421 helix_turn_helix, Lux Regulon YPA_RS17425 SM00450 Rhodanese Homology Domain YPA_RS17435 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_RS17435 SM01134 YPA_RS17435 YPA_RS17445 SM00382 ATPases associated with a variety of cellular activities YPA_RS17460 SM00052 Putative diguanylate phosphodiesterase YPA_RS17460 SM00091 PAS domain YPA_RS17460 SM00267 diguanylate cyclase YPA_RS17490 SM00869 Autotransporter beta-domain YPA_RS17495 SM00364 Leucine-rich repeats, bacterial type YPA_RS17500 SM00364 Leucine-rich repeats, bacterial type YPA_RS17510 SM01321 YPA_RS17510 YPA_RS17515 SM00364 Leucine-rich repeats, bacterial type YPA_RS17515 SM00369 Leucine-rich repeats, typical (most populated) subfamily YPA_RS17535 SM00823 Phosphopantetheine attachment site YPA_RS17535 SM00825 Beta-ketoacyl synthase YPA_RS17545 SM00382 ATPases associated with a variety of cellular activities YPA_RS17585 SM00382 ATPases associated with a variety of cellular activities YPA_RS17590 SM00382 ATPases associated with a variety of cellular activities YPA_RS17615 SM00869 Autotransporter beta-domain YPA_RS17650 SM00354 helix_turn _helix lactose operon repressor YPA_RS17700 SM00382 ATPases associated with a variety of cellular activities YPA_RS17700 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_RS17755 SM00860 SMI1 / KNR4 family YPA_RS17770 SM00530 Helix-turn-helix XRE-family like proteins YPA_RS17810 SM00382 ATPases associated with a variety of cellular activities YPA_RS17880 SM01321 YPA_RS17880 YPA_RS17915 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPA_RS17915 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPA_RS17920 SM01004 Delta-aminolevulinic acid dehydratase YPA_RS17930 SM00382 ATPases associated with a variety of cellular activities YPA_RS17955 SM00382 ATPases associated with a variety of cellular activities YPA_RS17960 SM01321 YPA_RS17960 YPA_RS18060 SM00448 cheY-homologous receiver domain YPA_RS18060 SM00862 Transcriptional regulatory protein, C terminal YPA_RS18065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS18065 SM00387 Histidine kinase-like ATPases YPA_RS18065 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS18070 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS18080 SM00971 Serine acetyltransferase, N-terminal YPA_RS18105 SM00450 Rhodanese Homology Domain YPA_RS18125 SM00829 Enoylreductase YPA_RS18165 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YPA_RS18165 SM01232 YPA_RS18165 YPA_RS18220 SM00532 Ligase N family YPA_RS18225 SM00072 Guanylate kinase homologues. YPA_RS18230 SM01409 YPA_RS18230 YPA_RS18235 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPA_RS18235 SM00954 Region found in RelA / SpoT proteins YPA_RS18245 SM00487 DEAD-like helicases superfamily YPA_RS18245 SM00490 helicase superfamily c-terminal domain YPA_RS18275 SM00382 ATPases associated with a variety of cellular activities YPA_RS18305 SM01230 YPA_RS18305 YPA_RS18315 SM01321 YPA_RS18315 YPA_RS18320 SM00091 PAS domain YPA_RS18320 SM00387 Histidine kinase-like ATPases YPA_RS18320 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS18325 SM00382 ATPases associated with a variety of cellular activities YPA_RS18325 SM00448 cheY-homologous receiver domain YPA_RS18330 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_RS18345 SM01321 YPA_RS18345 YPA_RS18355 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPA_RS18355 SM00474 3'-5' exonuclease YPA_RS18355 SM00475 5'-3' exonuclease YPA_RS18355 SM00482 DNA polymerase A domain YPA_RS18420 SM00382 ATPases associated with a variety of cellular activities YPA_RS18430 SM00957 SecA DEAD-like domain YPA_RS18430 SM00958 SecA preprotein cross-linking domain YPA_RS18450 SM00864 Tubulin/FtsZ family, GTPase domain YPA_RS18450 SM00865 Tubulin/FtsZ family, C-terminal domain YPA_RS18455 SM00842 Cell division protein FtsA YPA_RS18530 SM00354 helix_turn _helix lactose operon repressor YPA_RS18540 SM01321 YPA_RS18540 YPA_RS18580 SM01321 YPA_RS18580 YPA_RS18585 SM00917 LeuA allosteric (dimerisation) domain YPA_RS18590 SM01329 YPA_RS18590 YPA_RS18615 SM00382 ATPases associated with a variety of cellular activities YPA_RS18650 SM00382 ATPases associated with a variety of cellular activities YPA_RS18660 SM00486 DNA polymerase type-B family YPA_RS18665 SM00487 DEAD-like helicases superfamily YPA_RS18665 SM00490 helicase superfamily c-terminal domain YPA_RS18725 SM00382 ATPases associated with a variety of cellular activities YPA_RS18725 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_RS18760 SM00382 ATPases associated with a variety of cellular activities YPA_RS18810 SM00798 AICARFT/IMPCHase bienzyme YPA_RS18810 SM00851 MGS-like domain YPA_RS18815 SM01209 YPA_RS18815 YPA_RS18815 SM01210 YPA_RS18815 YPA_RS18825 SM00411 bacterial (prokaryotic) histone like domain YPA_RS18890 SM00876 Biotin and Thiamin Synthesis associated domain YPA_RS18905 SM01321 YPA_RS18905 YPA_RS18910 SM00663 RNA polymerase I subunit A N-terminus YPA_RS18935 SM00649 Ribosomal protein L11/L12 YPA_RS18940 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPA_RS18940 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPA_RS18975 SM00382 ATPases associated with a variety of cellular activities YPA_RS18990 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS19005 SM01133 YPA_RS19005 YPA_RS19015 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS19030 SM00382 ATPases associated with a variety of cellular activities YPA_RS19065 SM00382 ATPases associated with a variety of cellular activities YPA_RS19110 SM01321 YPA_RS19110 YPA_RS19115 SM00357 Cold shock protein domain YPA_RS19120 SM00357 Cold shock protein domain YPA_RS19135 SM00849 Metallo-beta-lactamase superfamily YPA_RS19155 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_RS19155 SM00895 YPA_RS19155 YPA_RS19190 SM00878 Biotin carboxylase C-terminal domain YPA_RS19215 SM00829 Enoylreductase YPA_RS19220 SM00052 Putative diguanylate phosphodiesterase YPA_RS19220 SM00267 diguanylate cyclase YPA_RS19245 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_RS19375 SM00642 Alpha-amylase domain YPA_RS19385 SM00354 helix_turn _helix lactose operon repressor YPA_RS19435 SM00382 ATPases associated with a variety of cellular activities YPA_RS19455 SM00116 Domain in cystathionine beta-synthase and other proteins. YPA_RS19465 SM00382 ATPases associated with a variety of cellular activities YPA_RS19500 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPA_RS19505 SM01321 YPA_RS19505 YPA_RS19510 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPA_RS19565 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_RS19575 SM00073 Histidine Phosphotransfer domain YPA_RS19575 SM00091 PAS domain YPA_RS19575 SM00387 Histidine kinase-like ATPases YPA_RS19575 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS19575 SM00448 cheY-homologous receiver domain YPA_RS19595 SM00749 bacterial OsmY and nodulation domain YPA_RS19635 SM00382 ATPases associated with a variety of cellular activities YPA_RS19690 SM00642 Alpha-amylase domain YPA_RS19695 SM00642 Alpha-amylase domain YPA_RS19705 SM00257 Lysin motif YPA_RS19705 SM00634 Bacterial Ig-like domain (group 1) YPA_RS19730 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPA_RS19765 SM00354 helix_turn _helix lactose operon repressor YPA_RS19780 SM00448 cheY-homologous receiver domain YPA_RS19780 SM00862 Transcriptional regulatory protein, C terminal YPA_RS19810 SM00382 ATPases associated with a variety of cellular activities YPA_RS19815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_RS19815 SM00387 Histidine kinase-like ATPases YPA_RS19815 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS19815 SM00448 cheY-homologous receiver domain YPA_RS19830 SM01321 YPA_RS19830 YPA_RS19845 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPA_RS19850 SM00235 Zinc-dependent metalloprotease YPA_RS19905 SM00869 Autotransporter beta-domain YPA_RS19925 SM00052 Putative diguanylate phosphodiesterase YPA_RS19965 SM00052 Putative diguanylate phosphodiesterase YPA_RS19965 SM00267 diguanylate cyclase YPA_RS19975 SM00382 ATPases associated with a variety of cellular activities YPA_RS19980 SM00382 ATPases associated with a variety of cellular activities YPA_RS20010 SM00912 haemagglutination activity domain YPA_RS20015 SM01321 YPA_RS20015 YPA_RS20030 SM00387 Histidine kinase-like ATPases YPA_RS20035 SM00382 ATPases associated with a variety of cellular activities YPA_RS20045 SM00382 ATPases associated with a variety of cellular activities YPA_RS20055 SM00530 Helix-turn-helix XRE-family like proteins YPA_RS20060 SM00382 ATPases associated with a variety of cellular activities YPA_RS20085 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain YPA_RS20095 SM01133 YPA_RS20095 YPA_RS20120 SM00749 bacterial OsmY and nodulation domain YPA_RS20155 SM00267 diguanylate cyclase YPA_RS20225 SM00382 ATPases associated with a variety of cellular activities YPA_RS20245 SM01133 YPA_RS20245 YPA_RS20280 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS20360 SM00382 ATPases associated with a variety of cellular activities YPA_RS20370 SM00382 ATPases associated with a variety of cellular activities YPA_RS20390 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPA_RS20395 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_RS20395 SM00357 Cold shock protein domain YPA_RS20395 SM00955 YPA_RS20395 YPA_RS20405 SM00788 Adenylosuccinate synthetase YPA_RS20415 SM00244 prohibitin homologues YPA_RS20420 SM00244 prohibitin homologues YPA_RS20440 SM00853 MutL C terminal dimerisation domain YPA_RS20440 SM01340 YPA_RS20440 YPA_RS20445 SM00257 Lysin motif YPA_RS20445 SM00646 YPA_RS20445 YPA_RS20475 SM00479 YPA_RS20475 YPA_RS20535 SM00841 Elongation factor P, C-terminal YPA_RS20535 SM01185 YPA_RS20535 YPA_RS20555 SM00883 Chaperonin 10 Kd subunit YPA_RS20585 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_RS20610 SM01276 YPA_RS20610 YPA_RS20635 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS20640 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS20665 SM01007 Class II Aldolase and Adducin N-terminal domain YPA_RS20675 SM00382 ATPases associated with a variety of cellular activities YPA_RS20715 SM01005 Alanine racemase, C-terminal domain YPA_RS20720 SM00382 ATPases associated with a variety of cellular activities YPA_RS20725 SM00829 Enoylreductase YPA_RS20755 SM00563 Phosphate acyltransferases YPA_RS20770 SM00869 Autotransporter beta-domain YPA_RS20775 SM00060 Fibronectin type 3 domain YPA_RS20875 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_RS20910 SM00382 ATPases associated with a variety of cellular activities YPA_RS20975 SM00382 ATPases associated with a variety of cellular activities YPA_RS21015 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS21035 SM00387 Histidine kinase-like ATPases YPA_RS21035 SM00388 His Kinase A (phosphoacceptor) domain YPA_RS21035 SM00448 cheY-homologous receiver domain YPA_RS21040 SM00421 helix_turn_helix, Lux Regulon YPA_RS21040 SM00448 cheY-homologous receiver domain YPA_RS21075 SM00382 ATPases associated with a variety of cellular activities YPA_RS21090 SM00267 diguanylate cyclase YPA_RS21100 SM00831 Cation transporter/ATPase, N-terminus YPA_RS21120 SM00855 Phosphoglycerate mutase family YPA_RS21125 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS21125 SM00871 Bacterial transcription activator, effector binding domain YPA_RS21135 SM00448 cheY-homologous receiver domain YPA_RS21135 SM00862 Transcriptional regulatory protein, C terminal YPA_RS21165 SM00852 Probable molybdopterin binding domain YPA_RS21190 SM00271 DnaJ molecular chaperone homology domain YPA_RS21215 SM00904 Riboflavin kinase YPA_RS21250 SM01321 YPA_RS21250 YPA_RS21260 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YPA_RS21265 SM00851 MGS-like domain YPA_RS21265 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPA_RS21290 SM01321 YPA_RS21290 YPA_RS21315 SM00650 Ribosomal RNA adenine dimethylases YPA_RS21335 SM00271 DnaJ molecular chaperone homology domain YPA_RS21365 SM00382 ATPases associated with a variety of cellular activities YPA_RS21380 SM00421 helix_turn_helix, Lux Regulon YPA_RS21380 SM00448 cheY-homologous receiver domain YPA_RS21435 SM00382 ATPases associated with a variety of cellular activities YPA_RS21460 SM00382 ATPases associated with a variety of cellular activities YPA_RS21475 SM00530 Helix-turn-helix XRE-family like proteins YPA_RS21505 SM00342 helix_turn_helix, arabinose operon control protein YPA_RS21515 SM00382 ATPases associated with a variety of cellular activities YPA_RS21580 SM00387 Histidine kinase-like ATPases YPA_RS21580 SM00433 TopoisomeraseII YPA_RS21590 SM00480 DNA polymerase III beta subunit YPA_RS21595 SM00382 ATPases associated with a variety of cellular activities YPA_RS21595 SM00760 Bacterial dnaA protein helix-turn-helix domain YPA_RS21655 SM00062 Bacterial periplasmic substrate-binding proteins YPA_RS21670 SM00382 ATPases associated with a variety of cellular activities YPA_RS21705 SM00382 ATPases associated with a variety of cellular activities YPA_RS21750 SM01228 YPA_RS21750