locus_tag old_locus_tag gene Name start end strand product note type ID NCBI YOP2083 YOP2083 YOP2083 2363016 2364254 - integrase gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=YOP2083 YP02742 YP02742 YP02742 3072352 3073578 + cytochrome c-type biogenesis protein gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=YP02742 YPCD1.01 YPCD1.01 YPCD1.01 88 1110 + putative transposase gene gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.01 YPCD1.02 YPCD1.02 YPCD1.02 1110 1889 + transposase/IS protein gene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.02 YPCD1.02n YPCD1.02n YPCD1.02n 1956 2307 - gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.02n YPCD1.03c YPCD1.03c YPCD1.03c 1956 2204 - gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.03c YPCD1.04 YPCD1.04 YPCD1.04 2304 2951 + gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.04 YPCD1.05c YPCD1.05c yerA yerA 3014 3406 - secretion chaperone chaperone for YopE gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.05c YPCD1.06 YPCD1.06 yopE yopE 3600 4259 + putative outer membrane virulence protein secreted effector gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.06 YPCD1.07 YPCD1.07 YPCD1.07 4261 4557 + hypothetical protein Orf75 (f98)%3B similar to gi|927749 hypothetical gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.07 YPCD1.08c YPCD1.08c YPCD1.08c 4399 4698 - hypothetical protein Orf74 (o99)%3B similar to gi|1806203 gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.08c YPCD1.09c YPCD1.09c YPCD1.09c 4691 4933 - hypothetical protein Orf73 (o91)%3B similar to gi|1806202 gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.09c YPCD1.09n YPCD1.09n YPCD1.09n 4973 5397 - gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.09n YPCD1.10c YPCD1.10c YPCD1.10c 5149 5397 - gene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.10c YPCD1.11 YPCD1.11 YPCD1.11 5498 5629 + gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.11 YPCD1.12c YPCD1.12c sopB sopB 6195 7157 - plasmid-partitioning protein SopB gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.12c YPCD1.13c YPCD1.13c sopA sopA 7157 8323 - plasmid-partitioning protein SopA gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.13c YPCD1.14c YPCD1.14c YPCD1.14c 9101 10207 - gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.14c YPCD1.14n YPCD1.14n YPCD1.14n 9123 9320 - hypothetical protein o65%3B similar to gi|790866 hypothetical protein from Neisseria gonorrhoeae gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.14n YPCD1.15c YPCD1.15c YPCD1.15c 9429 9887 - hypothetical protein gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.15c YPCD1.16c YPCD1.16c YPCD1.16c 9911 10234 - hypothetical protein gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.16c YPCD1.17c YPCD1.17c ylpA ylpA 10338 11046 - gene gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.17c YPCD1.18c YPCD1.18c YPCD1.18c 11260 11403 - gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.18c YPCD1.19c YPCD1.19c yopQ yopQ 11562 12110 - Yop targeting protein putative virulence determinant protein gene gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.19c YPCD1.20 YPCD1.20 yopT yopT 12610 13578 + Yop targeted effector putative cytotoxic effector protein gene gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.20 YPCD1.21 YPCD1.21 sycT sycT 13578 13976 + YopT chaperone gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.21 YPCD1.22c YPCD1.22c YPCD1.22c 14020 14409 - hypothetical protein ORF61 (o129) gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.22c YPCD1.22n YPCD1.22n YPCD1.22n 14442 14660 - gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.22n YPCD1.23 YPCD1.23 YPCD1.23 14681 15100 + hypothetical protein Orf60 (f139) gene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.23 YPCD1.24c YPCD1.24c YPCD1.24c 15628 15846 - gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.24c YPCD1.24n YPCD1.24n YPCD1.24n 15838 15974 - gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.24n YPCD1.25 YPCD1.25 YPCD1.25 15976 16293 + gene gene4041 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.25 YPCD1.26.1n YPCD1.26.1n YPCD1.26.1n 18189 18855 + gene gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.26.1n YPCD1.26c YPCD1.26c yopM yopM 16336 17565 - secreted effector protein gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.26c YPCD1.26n YPCD1.26n YPCD1.26n 17974 18180 - gene gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.26n YPCD1.27 YPCD1.27 YPCD1.27 18229 18883 + gene gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.27 YPCD1.28c YPCD1.28c yopD yopD 19294 20214 - secreted effector protein Yop targeting negative regulator%3B translocon component%3B important for translocation pore formation gene gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.28c YPCD1.29c YPCD1.29c yopB yopB 20233 21438 - secreted effector protein Yop targeting protein%3B translocon component%3B important for translocation pore formation gene gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.29c YPCD1.30c YPCD1.30c sycD sycD 21416 21922 - secretion chaperone chaperone for YopBD gene gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.30c YPCD1.31c YPCD1.31c lcrV lcrV 21935 22915 - secreted effector protein V antigen%3B low calcium response protein V%3B functions in needle complex protein export%3B Yop secretion and targeting control protein%3B important for translocation pore formation%3B induces IL-10 production by macrophages%3B interacts with Toll-like receptor 2 gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.31c YPCD1.32c YPCD1.32c lcrG lcrG 22917 23204 - low calcium response protein G V-antigen%3B Yop secretion and targeting control protein gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.32c YPCD1.33c YPCD1.33c lcrR lcrR 23246 23686 - low calcium response protein R gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.33c YPCD1.34c YPCD1.34c yscV yscV 23683 25797 - low calcium response protein D secretion protein%3B invasion protein gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.34c YPCD1.35c YPCD1.35c yscY yscY 25784 26128 - hypothetical protein Orf44 (o114)%3B similar to gi|1197038%3B putative type III secretion protein gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.35c YPCD1.36c YPCD1.36c yscX yscX 26125 26493 - hypothetical protein Orf43 (o122)%3B similar to gi|2459976%3B putative type III secretion protein gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.36c YPCD1.37c YPCD1.37c sycN sycN 26490 26861 - hypothetical protein Orf42 similar to gi|581840%3B putative type III secretion protein gene gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.37c YPCD1.38c YPCD1.38c tyeA tyeA 26848 27126 - Yop secretion and targeting control protein gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.38c YPCD1.39c YPCD1.39c lcrE lcrE 27107 27988 - secretion control protein gene gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.39c YPCD1.40 YPCD1.40 yscN yscN 28186 29505 + type III secretion system ATPase Yops secretion protein gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.40 YPCD1.41 YPCD1.41 yscO yscO 29502 29966 + type III secretion apparatus component gene gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.41 YPCD1.42 YPCD1.42 yscP yscP 29966 31333 + type III secretion apparatus component gene gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.42 YPCD1.43 YPCD1.43 yscQ yscQ 31330 32253 + type III secretion system protein type III secretion apparatus component gene gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.43 YPCD1.44 YPCD1.44 yscR yscR 32250 32903 + type III secretion system protein part of a set of proteins involved in the infection of eukaryotic cells%3B in plant pathogens involved in the hypersensitivity response gene gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.44 YPCD1.45 YPCD1.45 yscS yscS 32905 33171 + needle complex export protein type III secretion apparatus component gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.45 YPCD1.46 YPCD1.46 yscT yscT 33168 33953 + needle complex export protein type III secretion apparatus component gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.46 YPCD1.47 YPCD1.47 yscU yscU 33953 35017 + needle complex export protein type III secretion apparatus component gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.47 YPCD1.48 YPCD1.48 virG virG 35593 35988 + needle complex outer membrane lipoprotein precursor YscC lipoprotein chaperone%3B stabilizes outer membrane secretin gene gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.48 YPCD1.49 YPCD1.49 virF virF 36112 36927 + transcriptional regulator LCR activator%3B putative thermoregulatory protein gene gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.49 YPCD1.50 YPCD1.50 yscA yscA 37006 37104 + hypothetical protein gene gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.50 YPCD1.51 YPCD1.51 yscB yscB 37330 37743 + type III secretion apparatus component gene gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.51 YPCD1.52 YPCD1.52 yscC yscC 37749 39572 + outer membrane secretin precursor forms ring-shaped structure in outer membrane gene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.52 YPCD1.53 YPCD1.53 yscD yscD 39569 40828 + virulence protein type III secretion apparatus component gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.53 YPCD1.54 YPCD1.54 yscE yscE 40825 41025 + type III secretion apparatus component gene gene4072 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.54 YPCD1.55 YPCD1.55 yscF yscF 41026 41289 + needle complex major subunit type III secretion apparatus component gene gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.55 YPCD1.56 YPCD1.56 yscG yscG 41291 41638 + type III secretion apparatus component gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.56 YPCD1.57 YPCD1.57 yopR yopR 41635 42132 + secreted protein gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.57 YPCD1.58 YPCD1.58 lcrO lcrO 42133 42480 + type III secretion apparatus component gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.58 YPCD1.59 YPCD1.59 ylpB ylpB 42487 43221 + needle complex inner membrane lipoprotein gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.59 YPCD1.60 YPCD1.60 yscK yscK 43221 43850 + type III secretion apparatus component gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.60 YPCD1.61 YPCD1.61 yscL yscL 43796 44461 + type III secretion system protein type III secretion apparatus component gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.61 YPCD1.62 YPCD1.62 lcrQ lcrQ 44686 45033 + LCR negative regulator gene gene4080 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.62 YPCD1.63 YPCD1.63 lcrS lcrS 45581 45847 + putative transposase ORFA gene gene4081 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.63 YPCD1.64 YPCD1.64 lcrT lcrT 45883 46271 + ORFB gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.64 YPCD1.65 YPCD1.65 ORFC ORFC 46302 46610 + putative transposase gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.65 YPCD1.66 YPCD1.66 YPCD1.66 46610 46901 - gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.66 YPCD1.67c YPCD1.67c yopH yopH 47122 48528 - putative secreted protein-tyrosine phosphatase gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.67c YPCD1.68c YPCD1.68c YPCD1.68c 48811 49017 - gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.68c YPCD1.69 YPCD1.69 YPCD1.69 49044 49625 + gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.69 YPCD1.70c YPCD1.70c YPCD1.70c 49657 49755 - gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.70c YPCD1.71c YPCD1.71c yopJ yopJ 50211 51077 - targeted effector protein gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.71c YPCD1.72c YPCD1.72c ypkA ypkA 51473 53671 - secreted protein kinase gene gene4090 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.72c YPCD1.73c YPCD1.73c YPCD1.73c 53679 54128 - hypothetical protein Orf7 (o142)%3B similar to gi|2149940 orf1 from Pseudomonas syringae gene gene4091 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.73c YPCD1.74c YPCD1.74c YPCD1.74c 54378 54693 - gene gene4092 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.74c YPCD1.77c YPCD1.77c repA1 repA1 56291 57157 - replication protein RepA gene gene4093 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.77c YPCD1.78c YPCD1.78c tap tap 57150 57224 - RepA leader peptide Tap acts to regulate the expression of the plasmid replication protein RepA in the IncFII plasmid group gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.78c YPCD1.78n YPCD1.78n YPCD1.78n 57242 57331 + gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.78n YPCD1.79c YPCD1.79c copB copB 57466 57720 - replication protein gene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.79c YPCD1.80c YPCD1.80c YPCD1.80c 58166 58651 - gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.80c YPCD1.81 YPCD1.81 YPCD1.81 58307 58540 + gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.81 YPCD1.82c YPCD1.82c YPCD1.82c 58523 58888 - gene gene4099 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.82c YPCD1.83c YPCD1.83c YPCD1.83c 58881 59250 - gene gene4100 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.83c YPCD1.84c YPCD1.84c YPCD1.84c 59443 59934 - gene gene4101 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.84c YPCD1.85 YPCD1.85 YPCD1.85 59946 60307 + gene gene4102 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.85 YPCD1.87c YPCD1.87c yadA' yadA' 60565 61868 - a 1 bp deletion splits yadA gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.87c YPCD1.89 YPCD1.89 YPCD1.89 62468 62818 + gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.89 YPCD1.90c YPCD1.90c tnpA tnpA 62851 65166 - putative transposase gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.90c YPCD1.91 YPCD1.91 tnpR tnpR 65330 65881 + putative resolvase gene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.91 YPCD1.91n YPCD1.91n YPCD1.91n 65900 66364 + hypothetical protein Orf85 (f154)%3B similar to gi|1360613 gene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.91n YPCD1.92 YPCD1.92 YPCD1.92 66503 66832 + hypothetical protein Orf84 (f109)%3B similar to gi|2826244 type I restriction-modification enzyme gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.92 YPCD1.93 YPCD1.93 YPCD1.93 66932 67198 + putative transposase gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.93 YPCD1.94 YPCD1.94 YPCD1.94 67222 68031 + putative transposase gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.94 YPCD1.95c YPCD1.95c sycH sycH 68179 68604 - secretion chaperone chaperone for YopH gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.95c YPCD1.96c YPCD1.96c YPCD1.96c 68947 69378 - putative transposase gene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.96c YPCD1.97c YPCD1.97c YPCD1.97c 69378 70304 - putative transposase gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term=YPCD1.97c YPMT1.01 YPMT1.01 YPMT1.01 87 1109 + putative transposase gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.01 YPMT1.02 YPMT1.02 YPMT1.02 1109 1888 + transposase/IS protein gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.02 YPMT1.03c YPMT1.03c YPMT1.03c 2022 2630 - tail fiber assembly protein G gene gene4116 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.03c YPMT1.04c YPMT1.04c YPMT1.04c 2932 5868 - putative phage tail protein gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.04c YPMT1.05c YPMT1.05c YPMT1.05c 5901 6518 - hypothetical protein gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.05c YPMT1.06c YPMT1.06c YPMT1.06c 6536 11173 - host specificity protein J gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.06c YPMT1.07c YPMT1.07c YPMT1.07c 11189 11776 - putative phage tail protein gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.07c YPMT1.08c YPMT1.08c YPMT1.08c 11764 12561 - putative phage tail protein gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.08c YPMT1.09c YPMT1.09c YPMT1.09c 12554 13285 - minor tail fiber protein L gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.09c YPMT1.10c YPMT1.10c YPMT1.10c 13342 13677 - minor tail fiber protein M gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.10c YPMT1.11c YPMT1.11c YPMT1.11c 13719 18296 - hypothetical protein gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.11c YPMT1.12c YPMT1.12c YPMT1.12c 18304 18573 - hypothetical protein gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.12c YPMT1.13c YPMT1.13c YPMT1.13c 18654 18971 - hypothetical protein gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.13c YPMT1.14c YPMT1.14c YPMT1.14c 19031 19777 - hypothetical protein gene gene4128 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.14c YPMT1.15c YPMT1.15c YPMT1.15c 19852 20235 - hypothetical protein gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.15c YPMT1.16c YPMT1.16c YPMT1.16c 20237 20710 - hypothetical protein gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.16c YPMT1.17c YPMT1.17c YPMT1.17c 20701 21159 - hypothetical protein gene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.17c YPMT1.18c YPMT1.18c YPMT1.18c 21143 21976 - hypothetical protein gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.18c YPMT1.19c YPMT1.19c YPMT1.19c 21976 22410 - hypothetical protein gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.19c YPMT1.20c YPMT1.20c YPMT1.20c 22454 23116 - hypothetical protein gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.20c YPMT1.21c YPMT1.21c YPMT1.21c 23191 24066 - hypothetical protein gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.21c YPMT1.22c YPMT1.22c YPMT1.22c 24093 24926 - hypothetical protein gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.22c YPMT1.23c YPMT1.23c YPMT1.23c 24949 26538 - hypothetical protein gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.23c YPMT1.24c YPMT1.24c YPMT1.24c 26557 27813 - hypothetical protein gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.24c YPMT1.25Ac YPMT1.25Ac YPMT1.25Ac 28653 28919 - hypothetical protein gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.25Ac YPMT1.25c YPMT1.25c YPMT1.25c 27816 28457 - hypothetical protein gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.25c YPMT1.26Ac YPMT1.26Ac YPMT1.26Ac 29825 30079 - hypothetical protein gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.26Ac YPMT1.26c YPMT1.26c YPMT1.26c 28929 29828 - hypothetical protein gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.26c YPMT1.27c YPMT1.27c YPMT1.27c 30072 30710 - putative ABC transporter ATP-binding protein gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.27c YPMT1.28c YPMT1.28c YPMT1.28c 30707 31375 - hypothetical protein gene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.28c YPMT1.29c YPMT1.29c YPMT1.29c 31375 32073 - hypothetical protein gene gene4145 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.29c YPMT1.30 YPMT1.30 YPMT1.30 32138 33697 + hypothetical protein gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.30 YPMT1.31 YPMT1.31 YPMT1.31 33700 33978 + hypothetical protein gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.31 YPMT1.32 YPMT1.32 YPMT1.32 34038 34460 + putative lipoprotein gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.32 YPMT1.33 YPMT1.33 YPMT1.33 34465 34992 + putative transcriptional regulator gene gene4149 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.33 YPMT1.34 YPMT1.34 YPMT1.34 35314 35964 + hypothetical protein gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.34 YPMT1.34A YPMT1.34A YPMT1.34A 36049 36276 + hypothetical protein gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.34A YPMT1.34N YPMT1.34N YPMT1.34N 36577 36936 + hypothetical protein gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.34N YPMT1.35N YPMT1.35N YPMT1.35N 37410 37643 - hypothetical protein gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.35N YPMT1.35c YPMT1.35c YPMT1.35c 36915 37397 - hypothetical protein gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.35c YPMT1.36c YPMT1.36c YPMT1.36c 37603 37890 - hypothetical protein gene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.36c YPMT1.37c YPMT1.37c YPMT1.37c 38084 38593 - putative transposase gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.37c YPMT1.38c YPMT1.38c YPMT1.38c 38751 39320 - hypothetical protein gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.38c YPMT1.39c YPMT1.39c YPMT1.39c 39333 40079 - hypothetical protein gene gene4158 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.39c YPMT1.3Ac YPMT1.3Ac YPMT1.3Ac 2723 2935 - gene gene4117 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.3Ac YPMT1.40Ac YPMT1.40Ac YPMT1.40Ac 41994 42218 - hypothetical protein gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.40Ac YPMT1.40c YPMT1.40c YPMT1.40c 40069 41985 - putative exonuclease subunit 2 gene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.40c YPMT1.41c YPMT1.41c YPMT1.41c 42215 43300 - putative exonuclease subunit 1 gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.41c YPMT1.42 YPMT1.42 YPMT1.42 43716 44738 + putative periplasmic protein gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.42 YPMT1.42Ac YPMT1.42Ac YPMT1.42Ac 44876 45022 - hypothetical protein gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.42Ac YPMT1.43c YPMT1.43c YPMT1.43c 45098 45742 - hypothetical protein gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.43c YPMT1.44 YPMT1.44 YPMT1.44 46487 47551 + putative replication protein A gene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.44 YPMT1.45c YPMT1.45c YPMT1.45c 48120 48335 - hypothetical protein gene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.45c YPMT1.46Ac YPMT1.46Ac YPMT1.46Ac 48664 48843 - hypothetical protein gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.46Ac YPMT1.46Bc YPMT1.46Bc YPMT1.46Bc 48884 49159 - hypothetical protein gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.46Bc YPMT1.46c YPMT1.46c YPMT1.46c 48332 48667 - hypothetical protein gene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.46c YPMT1.47c YPMT1.47c YPMT1.47c 49227 49637 - hypothetical protein gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.47c YPMT1.48c YPMT1.48c YPMT1.48c 49621 49992 - hypothetical protein gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.48c YPMT1.49Ac YPMT1.49Ac YPMT1.49Ac 50980 51180 - hypothetical protein gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.49Ac YPMT1.49c YPMT1.49c YPMT1.49c 50146 50976 - putative lipoprotein gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.49c YPMT1.50Ac YPMT1.50Ac YPMT1.50Ac 52350 52616 - hypothetical protein gene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.50Ac YPMT1.50c YPMT1.50c YPMT1.50c 51271 52347 - putative recombinase gene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.50c YPMT1.51c YPMT1.51c YPMT1.51c 52616 53560 - putative exonuclease gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.51c YPMT1.52c YPMT1.52c YPMT1.52c 53621 54649 - hypothetical protein gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.52c YPMT1.53c YPMT1.53c YPMT1.53c 54769 55242 - hypothetical protein gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.53c YPMT1.54 YPMT1.54 YPMT1.54 55745 56308 + hypothetical protein gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.54 YPMT1.55c YPMT1.55c YPMT1.55c 56338 56781 - hypothetical protein gene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.55c YPMT1.56c YPMT1.56c YPMT1.56c 56778 57266 - gene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.56c YPMT1.57c YPMT1.57c YPMT1.57c 57333 58115 - transposase/IS protein gene gene4182 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.57c YPMT1.58c YPMT1.58c YPMT1.58c 58112 59134 - transposase gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.58c YPMT1.59c YPMT1.59c YPMT1.59c 59258 61267 - putative DNA-binding protein gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.59c YPMT1.60c YPMT1.60c YPMT1.60c 61340 61570 - hypothetical protein gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.60c YPMT1.61N YPMT1.61N YPMT1.61N 62997 63347 + hypothetical protein gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.61N YPMT1.61c YPMT1.61c YPMT1.61c 62283 62789 - antirestriction protein gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.61c YPMT1.62c YPMT1.62c YPMT1.62c 63188 63967 - hypothetical protein gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.62c YPMT1.63Ac YPMT1.63Ac YPMT1.63Ac 64451 64672 - hypothetical protein gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.63Ac YPMT1.63c YPMT1.63c YPMT1.63c 64021 64440 - hypothetical protein gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.63c YPMT1.64N YPMT1.64N YPMT1.64N 64969 65496 + hypothetical protein gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.64N YPMT1.64c YPMT1.64c YPMT1.64c 64672 65349 - putative methylase gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.64c YPMT1.65 YPMT1.65 YPMT1.65 65742 66050 + hypothetical protein gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.65 YPMT1.66c YPMT1.66c YPMT1.66c 66212 67609 - putative DNA-binding protein gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.66c YPMT1.67c YPMT1.67c parB parB 67988 68959 - partitioning protein B gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.67c YPMT1.68A YPMT1.68A YPMT1.68A 70463 70690 + hypothetical protein gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.68A YPMT1.68c YPMT1.68c parA parA 68956 70161 - partitioning protein A gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.68c YPMT1.69 YPMT1.69 YPMT1.69 70690 71016 + hypothetical protein gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.69 YPMT1.70 YPMT1.70 YPMT1.70 71216 71836 + putative resolvase gene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.70 YPMT1.71 YPMT1.71 YPMT1.71 71857 72843 + hypothetical protein gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.71 YPMT1.72c YPMT1.72c YPMT1.72c 72866 73141 - hypothetical protein gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.72c YPMT1.73 YPMT1.73 YPMT1.73 73881 74369 + putative phospholipase D gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.73 YPMT1.74 YPMT1.74 YPMT1.74 74447 76210 + toxin protein gene gene4203 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.74 YPMT1.75c YPMT1.75c YPMT1.75c 76455 76925 - reverse transcriptase gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.75c YPMT1.76 YPMT1.76 YPMT1.76 76996 77304 + hypothetical protein gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.76 YPMT1.76A YPMT1.76A YPMT1.76A 77219 77590 + hypothetical protein gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.76A YPMT1.77c YPMT1.77c YPMT1.77c 77583 77666 - gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.77c YPMT1.78 YPMT1.78 YPMT1.78 77764 78087 + gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.78 YPMT1.79c YPMT1.79c YPMT1.79c 78286 79308 - transposase gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.79c YPMT1.80c YPMT1.80c YPMT1.80c 79777 80985 - putative transposase gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.80c YPMT1.81c YPMT1.81c YPMT1.81c 81334 82257 - putative F1 operon positive regulatory protein gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.81c YPMT1.82 YPMT1.82 caf1M caf1M 82567 83343 + putative F1 chaperone protein gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.82 YPMT1.83 YPMT1.83 caf1A caf1A 83368 85869 + putative F1 capsule anchoring protein gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.83 YPMT1.84 YPMT1.84 YPMT1.84 85950 86462 + F1 capsule antigen gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.84 YPMT1.85 YPMT1.85 YPMT1.85 87147 88325 + gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.85 YPMT1.86A YPMT1.86A YPMT1.86A 88969 89181 + hypothetical protein gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.86A YPMT1.86c YPMT1.86c YPMT1.86c 88320 88706 - hypothetical protein gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.86c YPMT1.87 YPMT1.87 cobT cobT 89291 91657 + porphyrin biosynthetic protein gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.87 YPMT1.88 YPMT1.88 cobS cobS 91754 92989 + porphyrin biosynthetic protein gene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.88 YPMT1.89 YPMT1.89 YPMT1.89 93170 96208 + gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term=YPMT1.89 YPO0001 YPO0001 YPO0001 271 711 - flavodoxin An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0001 YPO0002 YPO0002 asnC asnC 804 1265 - DNA-binding transcriptional regulator AsnC transcriptional repressor of asnA which codes for aspartate-ammonia ligase gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0002 YPO0003 YPO0003 asnA asnA 1435 2427 + asparagine synthetase AsnA catalyzes the formation of asparagine from aspartate and ammonia gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0003 YPO0004 YPO0004 yieM yieM 2526 3992 - hypothetical protein contains a von Willibrand factor type A domain%3B stimulates the ATPase activity of RavA gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0004 YPO0005 YPO0005 YPO0005 3996 5549 - regulatory ATPase RavA interacts with LdcI%2C lysine decarboxylase%3B may be active in late log/ early stationary phase gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0005 YPO0006 YPO0006 trkD trkD 5823 7691 + potassium transport protein Kup Responsible for the low-affinity transport of potassium into the cell%3B involved in potassium ion uptake under hyper-osmotic stress at a low pH gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0006 YPO0007 YPO0007 YPO0007 7896 8315 + D-ribose pyranase cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose%3B RbsD is required for efficient ribose utilization in E. coli%3B rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0007 YPO0008 YPO0008 rbsK rbsK 8366 9292 + ribokinase catalyzes the formation of D-ribose 5-phosphate from ribose gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0008 YPO0009 YPO0009 YPO0009 9512 10936 - membrane transport protein gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0009 YPO0010 YPO0010 YPO0010 11016 11705 - GntR family transcriptional regulator gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0010 YPO0010a YPO0010a YPO0010a 12074 12259 - hypothetical protein gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0010a YPO0011 YPO0011 YPO0011 17906 19114 + transposase for the IS285 insertion element y1062%3B ypmt1.80C gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0011 YPO0012 YPO0012 mobB mobB 19172 19702 - molybdopterin-guanine dinucleotide biosynthesis protein B in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0012 YPO0013 YPO0013 mobA mobA 19702 20343 - molybdopterin-guanine dinucleotide biosynthesis protein MobA in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0013 YPO0013a YPO0013a YPO0013a 20443 20712 + hypothetical protein gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0013a YPO0014 YPO0014 YPO0014 20792 21778 + serine/threonine protein kinase catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro%3B specific substrate in vivo has not been identified yet%3B plays a role in long-term cell survival and expression of surface appendages gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0014 YPO0015 YPO0015 dsbA dsbA 21806 22429 + periplasmic protein disulfide isomerase I gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0015 YPO0017 YPO0017 polA polA 22921 25719 + DNA polymerase I has 3'-5' exonuclease%2C 5'-3' exonuclease and 5'-3'polymerase activities%2C primarily functions to fill gaps during DNA replication and repair gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0017 YPO0018 YPO0018 tnp tnp 26128 26586 + transposase for the IS1541 insertion element gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0018 YPO0019 YPO0019 engB engB 26838 27488 - ribosome biogenesis GTP-binding protein YsxC binds guanine nucleotides%3B in Escherichia coli depletion results in defective cell division and filamentation%3B in Bacillus subtilis this gene is essential gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0019 YPO0020 YPO0020 YPO0020 28233 28799 + hypothetical protein gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0020 YPO0021 YPO0021 hemN hemN 28982 30355 + coproporphyrinogen III oxidase catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0021 YPO0022 YPO0022 glnG glnG 30409 31821 - nitrogen regulation protein NR(I) response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes%3B interacts with sigma-54 gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0022 YPO0023 YPO0023 glnL glnL 31829 32878 - nitrogen regulation protein NR(II) sensory histidine kinase in two-component regulatory system with GlnG%3B acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0023 YPO0024 YPO0024 glnA glnA 33131 34540 - glutamine synthetase forms a homododecamer%3B forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate%3B also functions in the assimilation of ammonia%3B highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues%3B addition of adenylyl groups results in inactivation of the enzyme gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0024 YPO0026 YPO0026 bipA bipA 35102 36925 + GTPase gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0026 YPO0027 YPO0027 YPO0027 37247 37837 + phosphatase gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0027 YPO0028 YPO0028 rbn rbn 37934 38818 + ribonuclease BN RNase BN%3B required for 3' maturation of certain phage T4-encoded tRNAs%3B forms a dimer%3B specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence%3B 3' to 5' exoribonuclease gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0028 YPO0029 YPO0029 YPO0029 38825 39262 + D-tyrosyl-tRNA(Tyr) deacylase hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr)%3B possible defense mechanism against a harmful effect of D-tyrosine gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0029 YPO0030 YPO0030 YPO0030 39336 40118 - transposase/IS protein ypmt1.57c gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0030 YPO0031 YPO0031 y1093 y1093 40115 41137 - transposase for insertion sequence IS100 gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0031 YPO0032 YPO0032 YPO0032 41407 42330 + hypothetical protein gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0032 YPO0033 YPO0033 YPO0033 42465 44174 - hypothetical protein gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0033 YPO0034 YPO0034 YPO0034 44322 45707 - membrane permease gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0034 YPO0035 YPO0035 gltC gltC 45945 47159 + sodium/glutamate symport carrier protein gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0035 YPO0036 YPO0036 recG recG 47525 49606 - ATP-dependent DNA helicase RecG catalyzes branch migration in Holliday junction intermediates gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0036 YPO0037 YPO0037 trmH trmH 49607 50299 - tRNA guanosine-2'-O-methyltransferase specifically modifies tRNA at position G18 gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0037 YPO0038 YPO0038 spoT spoT 50305 52413 - bifunctional (p)ppGpp synthetase II/ guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0038 YPO0039 YPO0039 rpoZ rpoZ 52433 52708 - DNA-directed RNA polymerase subunit omega promotes RNA polymerase assembly or stability%3B latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0039 YPO0040 YPO0040 gmk gmk 52763 53386 - guanylate kinase Essential for recycling GMP and indirectly%2C cGMP gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0040 YPO0041 YPO0041 ligB ligB 53787 55490 + NAD-dependent DNA ligase LigB this ligase is similar to LigA but it lacks the C-terminal BRCT domain%3B catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+ gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0041 YPO0042 YPO0042 YPO0042 55503 56126 - hypothetical protein gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0042 YPO0043 YPO0043 YPO0043 56529 57392 - hypothetical protein gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0043 YPO0044 YPO0044 rph rph 57519 58235 + ribonuclease PH RNase PH%3B tRNA nucleotidyltransferase%3B forms hexamers in Bacillus subtilis%3B phosphoroltic 3'-5' exoribonuclease%3B involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0044 YPO0045 YPO0045 pyrE pyrE 58402 59049 + orotate phosphoribosyltransferase involved in fifth step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0045 YPO0046 YPO0046 slmA slmA 59184 59780 - nucleoid occlusion protein FtsZ binding protein%3B synthetically lethal with a defect in the Min system%3B this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0046 YPO0047 YPO0047 dut dut 59902 60357 - deoxyuridine 5'-triphosphate nucleotidohydrolase catalyzes the formation of dUMP from dUTP gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0047 YPO0048 YPO0048 dfp dfp 60338 61552 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine%2C which is then decarboxylated to form 4'-phosphopantotheine gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0048 YPO0049 YPO0049 radC radC 61749 62417 + DNA repair protein RadC Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0049 YPO0050 YPO0050 rpmB rpmB 62680 62916 + 50S ribosomal protein L28 required for 70S ribosome assembly gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0050 YPO0051 YPO0051 rpmG rpmG 62928 63095 + 50S ribosomal protein L33 in Escherichia coli BM108%2C a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function%3B there are paralogous genes in several bacterial genomes%2C and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31%3B the proteins in this group lack the CXXC motif gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0051 YPO0052 YPO0052 mutM mutM 63178 63987 + formamidopyrimidine-DNA glycosylase Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0052 YPO0053 YPO0053 coaD coaD 63993 64472 - phosphopantetheine adenylyltransferase Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0053 YPO0054 YPO0054 kdtX kdtX 64469 65251 - lipopolysaccharide core biosynthesis glycosyl transferase gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0054 YPO0055 YPO0055 kdtA kdtA 65252 66529 - 3-deoxy-D-manno-octulosonic-acid transferase catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0055 YPO0056 YPO0056 rfaC rfaC 66949 67914 - ADP-heptose:LPS heptosyl transferase I gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0056 YPO0057 YPO0057 rfaF rfaF 67914 68978 - ADP-heptose:LPS heptosyltransferase II catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0057 YPO0058 YPO0058 rfaD rfaD 69009 69941 - ADP-L-glycero-D-manno-heptose-6-epimerase catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0058 YPO0059 YPO0059 kbl kbl 70187 71398 + 2-amino-3-ketobutyrate CoA ligase catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0059 YPO0060 YPO0060 tdh tdh 71408 72433 + L-threonine 3-dehydrogenase converts threonine and NAD to 1%2C2-amino-3-oxobutanoate and NADH%3B functions in threonine catabolism gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0060 YPO0061 YPO0061 YPO0061 72571 73370 - gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0061 YPO0063 YPO0063 YPO0063 73529 74881 - hypothetical protein gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0063 YPO0064 YPO0064 YPO0064 74909 76456 - phosphoglyceromutase catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0064 YPO0065 YPO0065 YPO0065 76853 77287 + hypothetical protein gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0065 YPO0066 YPO0066 grxC grxC 77406 77654 + glutaredoxin 3 gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0066 YPO0067 YPO0067 secB secB 77742 78218 + preprotein translocase subunit SecB molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm%3B in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0067 YPO0068 YPO0068 gpsA gpsA 78218 79237 + NAD(P)H-dependent glycerol-3-phosphate dehydrogenase catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0068 YPO0069 YPO0069 YPO0069 79297 79437 + hypothetical protein No significant database hits gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0069 YPO0070 YPO0070 cysE cysE 79503 80324 + serine acetyltransferase catalyzes the O-acetylation of serine gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0070 YPO0071 YPO0071 YPO0071 80447 80935 - methyltransferase gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0071 YPO0072 YPO0072 YPO0072 81124 82188 + bifunctional regulatory protein/DNA repair protein gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0072 YPO0073 YPO0073 cpxA cpxA 82237 83613 - two-component sensor protein part of two-component CpxA/CpxR system%3B senses envelope stress%3B upregulates a number of periplasmic folding and trafficking factors gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0073 YPO0074 YPO0074 cpxR cpxR 83610 84308 - DNA-binding transcriptional regulator CpxR response regulator in two-component regulatory system with CpxA%3B part of the envelope stress response system gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0074 YPO0075 YPO0075 cpxP cpxP 84482 84970 + periplasmic stress adaptor protein CpxP repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA%3B CpxP is degraded by DegP protease especially in the presence of misfolded substrates gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0075 YPO0076 YPO0076 YPO0076 85648 86607 + hypothetical protein gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0076 YPO0077 YPO0077 fieF fieF 87169 88071 + ferrous iron efflux protein F member of cation diffusion facilitator family%3B CDF%3B membrane-bound%3B induced by both zinc and iron%2C but does not induce resistance to zinc%3B can transport zinc(II) in a proton-dependent manner%3B instead this protein induces iron resistance%3B forms dimers gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0077 YPO0078 YPO0078 pfkA pfkA 88289 89272 + 6-phosphofructokinase catalyzes the formation of D-fructose 1%2C6-bisphosphate from D-fructose 6-phosphate in glycolysis gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0078 YPO0079 YPO0079 sbp1 sbp1 89493 90482 + sulfate transporter subunit gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0079 YPO0080 YPO0080 YPO0080 90732 91550 - hypothetical protein gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0080 YPO0081 YPO0081 YPO0081 91626 93053 - membrane transport protein gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0081 YPO0082 YPO0082 YPO0082 93119 93832 - hypothetical protein gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0082 YPO0083 YPO0083 YPO0083 93829 94566 - hypothetical protein gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0083 YPO0084 YPO0084 YPO0084 94892 95938 + transcriptional regulator gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0084 YPO0085 YPO0085 tpiA tpiA 96170 96937 - triosephosphate isomerase Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0085 YPO0086 YPO0086 YPO0086 97066 97701 - hypothetical protein gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0086 YPO0087 YPO0087 YPO0087 97849 98283 + hypothetical protein gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0087 YPO0088 YPO0088 fpr fpr 98624 99370 - ferredoxin-NADP reductase gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0088 YPO0089 YPO0089 'glpX 'glpX 99525 100193 - gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0089 YPO0090 YPO0090 glpK' glpK' 100264 101355 - gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0090 YPO0091 YPO0091 glpF glpF 101532 102380 - glycerol uptake facilitator protein gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0091 YPO0093 YPO0093 YPO0093 103008 103247 + hypothetical protein gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0093 YPO0094 YPO0094 tnp tnp 103455 103913 - transposase for the IS1541 insertion element gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0094 YPO0096 YPO0096 YPO0096 105645 106427 - transposase/IS protein ypmt1.57c gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0096 YPO0097 YPO0097 y1093 y1093 106424 107446 - transposase for insertion sequence IS100 gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0097 YPO0099 YPO0099 YPO0099 108358 109593 - hypothetical protein gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0099 YPO0100 YPO0100 YPO0100 109863 110102 + hypothetical protein no significant database hits gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0100 YPO0101 YPO0101 YPO0101 110277 110426 + hypothetical protein Doubtful CDS with no significant database hits gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0101 YPO0102 YPO0102 YPO0102 110732 111316 + hypothetical protein No significant database hits gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0102 YPO0103 YPO0103 menG menG 111433 111918 - ribonuclease activity regulator protein RraA regulator of RNase E%3B increases half-life and abundance of RNAs%3B interacts with RNase E possibly inhibiting catalytic activity gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0103 YPO0104 YPO0104 menA menA 112060 112977 - 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase catalyzes the formation of dimethylmenaquinone from 1%2C4-dihydroxy-2-naphthoate and octaprenyl diphosphate gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0104 YPO0105 YPO0105 hslU hslU 113213 114544 - ATP-dependent protease ATP-binding subunit HslU heat shock protein involved in degradation of misfolded proteins gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0105 YPO0106 YPO0106 hslV hslV 114615 115139 - ATP-dependent protease peptidase subunit heat shock protein involved in degradation of misfolded proteins gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0106 YPO0107 YPO0107 ftsN ftsN 115239 116084 - cell division protein FtsN gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0107 YPO0108 YPO0108 cytR cytR 116150 117178 - DNA-binding transcriptional regulator CytR negatively controls the transcription initiation of genes such as deoCABD%2C udp%2C and cdd encoding catabolizing enzymes and nupC%2C nupG%2C and tsx encoding transporting and pore-forming proteins gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0108 YPO0110 YPO0110 priA priA 117531 119729 - primosome assembly protein PriA binding of PriA to forked DNA starts the assembly of the primosome%2C also possesses 3'-5' helicase activity gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0110 YPO0111 YPO0111 rpmE rpmE 119972 120187 + 50S ribosomal protein L31 RpmE%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0111 YPO0112 YPO0112 YPO0112 120748 121203 - hypothetical protein gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0112 YPO0114 YPO0114 metJ metJ 121552 121869 - transcriptional repressor protein MetJ when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0114 YPO0115 YPO0115 metB metB 122247 123406 + gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0115 YPO0116 YPO0116 metL metL 123409 125844 + bifunctional aspartate kinase II/homoserine dehydrogenase II multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0116 YPO0117 YPO0117 metF metF 126077 126961 + 5%2C10-methylenetetrahydrofolate reductase MTHFR%3B catalyzes NADH-linked reduction of 5%2C10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0117 YPO0118 YPO0118 YPO0118 127139 127924 - transposase for insertion sequence IS1661 gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0118 YPO0119 YPO0119 YPO0119 127978 128622 - insertion element DNA-binding protein gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0119 YPO0120 YPO0120 glpR glpR 128686 129444 - DNA-binding transcriptional repressor GlpR represses the glpD%2C glpFK%2C glpTQ%2C and glpACB operons involved in glycerol-3-phosphate metabolism gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0120 YPO0121 YPO0121 glpG glpG 129479 130315 - intramembrane serine protease GlpG protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0121 YPO0122 YPO0122 glpE glpE 130333 130662 - thiosulfate sulfurtransferase belongs to rhodanese family%3B thiosulfate thiotransferase%3B in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency%3B contains an active site cysteine gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0122 YPO0123 YPO0123 malT malT 131037 133748 - transcriptional regulator MalT Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0123 YPO0124 YPO0124 malP malP 134066 136470 + gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0124 YPO0126 YPO0126 malQ malQ 136483 138579 + 4-alpha-glucanotransferase amylomaltase%3B acts to release glucose from maltodextrins gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0126 YPO0127 YPO0127 YPO0127 138908 139483 - DNA uptake protein cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0127 YPO0128 YPO0128 YPO0128 139543 140244 - gluconate periplasmic binding protein involved in high-affinity gluconate transport gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0128 YPO0129 YPO0129 bioH bioH 140331 141107 + biotin biosynthesis protein gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0129 YPO0130 YPO0130 YPO0130 141277 141546 + hypothetical protein gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0130 YPO0131 YPO0131 YPO0131 141684 141941 - hypothetical protein gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0131 YPO0132 YPO0132 feoB feoB 141977 144292 - ferrous iron transport protein B cytoplasmic membrane ferrous uptake system permease%3B mutations disrupt the ability of Escherichia coli to take up ferrous iron%3B GTP-binding protein which requires GTP for efficient iron(II) uptake gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0132 YPO0133 YPO0133 feoA feoA 144384 144611 - ferrous iron transport protein A gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0133 YPO0134 YPO0134 YPO0134 145135 147510 - hypothetical protein gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0134 YPO0135 YPO0135 greB greB 148044 148559 + transcription elongation factor GreB necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0135 YPO0136 YPO0136 ompR ompR 148695 149414 + osmolarity response regulator part of two-component system EnvZ/OmpR%3B regulates transcription of outer membrane porin genes ompC/F%3B under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR%3B the result is increased expression of ompC and repression of ompF%3B also functions in regulation of other genes%3B forms dimers upon phosphorylation gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0136 YPO0137 YPO0137 envZ envZ 149411 150763 + osmolarity sensor protein membrane-localized osmosensor%3B histidine kinase%3B in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0137 YPO0138 YPO0138 pckA pckA 150898 152517 - phosphoenolpyruvate carboxykinase PEP carboxykinase%3B PEP carboxylase%3B PEPCK%3B catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0138 YPO0139 YPO0139 hslO hslO 152714 153595 - heat shock protein 33 becomes active under oxidative stress%3B four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive%3B oxidative stress results in oxidized cysteines%2C release of zinc%2C and binding of Hsp33 to aggregation-prone proteins%3B forms dimers and higher order oligomers gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0139 YPO0140 YPO0140 hslR hslR 153758 154165 - heat shock protein 15 gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0140 YPO0141 YPO0141 YPO0141 154194 154874 - hypothetical protein gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0141 YPO0142 YPO0142 YPO0142 155018 157165 - hypothetical protein gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0142 YPO0144 YPO0144 nudE nudE 157752 158297 + ADP-ribose diphosphatase NudE ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0144 YPO0145 YPO0145 mrcA mrcA 158433 160988 - peptidoglycan synthetase bifunctional murein transglycosylase/murein transpeptidase%3B penicillin-binding protein 1A%3B involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation%3B penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0145 YPO0146 YPO0146 YPO0146 161063 162004 + hypothetical protein gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0146 YPO0147 YPO0147 YPO0147 162004 162609 + hypothetical protein gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0147 YPO0148 YPO0148 YPO0148 162602 163183 + hypothetical protein No significant database hits gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0148 YPO0149 YPO0149 YPO0149 163209 163577 + hypothetical protein Doubtful CDS%2C no significant database hits gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0149 YPO0150 YPO0150 hofQ hofQ 164004 165128 + porin outer membrane porin probably involved in uptake of extracellular double-stranded DNA%3B similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0150 YPO0151 YPO0151 aroK aroK 165477 165998 + shikimate kinase I type I enzyme similar to type II but differentially regulated%3B major shikimate kinase in fully repressed cells%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0151 YPO0152 YPO0152 aroB aroB 166055 167143 + 3-dehydroquinate synthase catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate%3B functions in aromatic amino acid biosynthesis gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0152 YPO0153 YPO0153 YPO0153 167397 168386 + hypothetical protein gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0153 YPO0154 YPO0154 dam dam 168470 169285 + DNA adenine methylase gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0154 YPO0155 YPO0155 rpe rpe 169588 170265 + ribulose-phosphate 3-epimerase gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0155 YPO0156 YPO0156 gph gph 170258 170956 + phosphoglycolate phosphatase catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0156 YPO0157 YPO0157 trpS trpS 170958 171998 + tryptophanyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0157 YPO0158 YPO0158 cysG cysG 172153 173565 - siroheme synthase multifunction enzyme consisting of uroporphyrin-III C-methyltransferase%2C precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase%3B catalyzes the methylation of uroporphyrinogen III to form precorrin-2%2C then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0158 YPO0159 YPO0159 nirC nirC 173653 174459 - nitrite transporter NirC member of the FNT family of formate and nitrite transporters gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0159 YPO0160 YPO0160 nirD nirD 174662 174988 - nitrite reductase small subunit involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+%3B bounds to NirB%2C the cytoplasmic subunit%2C whose expression is induced at high nitrate concentrations gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0160 YPO0161 YPO0161 nirB nirB 174985 177531 - nitrite reductase gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0161 YPO0162 YPO0162 codA codA 177841 179151 + cytosine deaminase Catalyzes the deamination of cytosine to uracil and ammonia gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0162 YPO0163 YPO0163 YPO0163 179236 180420 - hypothetical protein gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0163 YPO0164 YPO0164 YPO0164 180906 182966 + membrane receptor protein gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0164 YPO0165 YPO0165 YPO0165 183067 184053 - LacI family transcriptional regulator gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0165 YPO0166 YPO0166 YPO0166 184302 185615 - glycosyl hydrolase gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0166 YPO0167 YPO0167 ppiA ppiA 186131 186700 + peptidyl-prolyl cis-trans isomerase A gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0167 YPO0168 YPO0168 YPO0168 187026 188567 + hypothetical protein gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0168 YPO0169 YPO0169 pabA pabA 188810 189385 + para-aminobenzoate synthase component II aminodeoxychorismate synthase subunit PabA%3B with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis%3B PabA provides the glutamine amidotransferase activity gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0169 YPO0171 YPO0171 y1093 y1093 190137 191159 + transposase for insertion sequence IS100 gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0171 YPO0172 YPO0172 YPO0172 191156 191938 + transposase/IS protein ypmt1.57c gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0172 YPO0174 YPO0174 YPO0174 192920 195040 - hypothetical protein gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0174 YPO0175 YPO0175 crp crp 195126 195758 - cAMP-regulatory protein complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0175 YPO0176 YPO0176 YPO0176 196094 196501 + hypothetical protein gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0176 YPO0177 YPO0177 YPO0177 196573 197004 + hypothetical protein No significant database hits. CDS DNA has a low G+C content (34%25). gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0177 YPO0178 YPO0178 prk prk 197182 198051 - phosphoribulokinase 1 gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0178 YPO0179 YPO0179 YPO0179 198200 198436 - hypothetical protein gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0179 YPO0180 YPO0180 YPO0180 198433 199413 - hydrolase gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0180 YPO0181 YPO0181 YPO0181 199515 200117 + ABC transporter gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0181 YPO0182 YPO0182 tauA tauA 200320 201381 + taurine transporter substrate binding subunit with TauB and TauC is responsible for taurine uptake. gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0182 YPO0183 YPO0183 tauB tauB 201390 202157 + taurine transporter ATP-binding protein Part of the ABC transporter complex tauABC involved in taurine import gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0183 YPO0184 YPO0184 tauC tauC 202154 203008 + taurine transporter subunit gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0184 YPO0185 YPO0185 tauD tauD 203005 203853 + taurine dioxygenase catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide%3B non-heme iron oxidase%3B allows the use of taurine as an alternative sulfur source%3B forms homodimers gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0185 YPO0186 YPO0186 YPO0186 203866 204846 - sugar transferase gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0186 YPO0187 YPO0187 YPO0187 204939 205928 - glycosyl transferase gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0187 YPO0188 YPO0188 YPO0188 206063 207981 - gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0188 YPO0190 YPO0190 YPO0190 208229 208780 + glutathione-regulated potassium-efflux system ancillary protein KefG required for KefB activity gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0190 YPO0191 YPO0191 kefB kefB 208784 210592 + glutathione-regulated potassium-efflux system protein KefB involved in potassium efflux gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0191 YPO0192 YPO0192 YPO0192 210608 210829 + hypothetical protein gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0192 YPO0193 YPO0193 slyD slyD 210924 211511 + FKBP-type peptidylprolyl isomerase rotamase gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0193 YPO0194 YPO0194 YPO0194 211732 211950 - hypothetical protein gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0194 YPO0195 YPO0195 fkpA fkpA 212265 213065 + FKBP-type peptidylprolyl isomerase rotamase gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0195 YPO0196 YPO0196 YPO0196 213307 214041 + DNA-binding protein gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0196 YPO0197 YPO0197 YPO0197 214041 214436 + sulfur transfer complex subunit TusD in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0197 YPO0198 YPO0198 YPO0198 214436 214801 + sulfur relay protein TusC in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0198 YPO0199 YPO0199 YPO0199 214821 215108 + sulfur transfer complex subunit TusB in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0199 YPO0200 YPO0200 rpsL rpsL 215246 215620 + 30S ribosomal protein S12 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone%3B located at the interface of the 30S and 50S subunits%2C it traverses the body of the 30S subunit contacting proteins on the other side%3B mutations in the S12 gene confer streptomycin resistance gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0200 YPO0201 YPO0201 rpsG rpsG 215717 216187 + 30S ribosomal protein S7 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0201 YPO0202 YPO0202 fusA fusA 216281 218389 + elongation factor G EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0202 YPO0203 YPO0203 tuf tuf 218462 219646 + elongation factor Tu EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0203 YPO0204 YPO0204 tnp tnp 219849 220307 + transposase for the IS1541 insertion element gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0204 YPO0205 YPO0205 bfd bfd 220495 220689 + bacterioferritin-associated ferredoxin gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0205 YPO0206 YPO0206 bfr bfr 220768 221241 + bacterioferritin iron storage protein gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0206 YPO0209 YPO0209 rpsJ rpsJ 221655 221966 + 30S ribosomal protein S10 NusE%3B involved in assembly of the 30S subunit%3B in the ribosome%2C this protein is involved in the binding of tRNA%3B in Escherichia coli this protein was also found to be involved in transcription antitermination%3B NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination%3B binding of NusB/S10 to boxA nucleates assembly of the antitermination complex gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0209 YPO0210 YPO0210 rplC rplC 221999 222628 + 50S ribosomal protein L3 binds directly near the 3' end of the 23S rRNA%2C where it nucleates assembly of the 50S subunit%3B essential for peptidyltransferase activity%3B mutations in this gene confer resistance to tiamulin gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0210 YPO0211 YPO0211 rplD rplD 222645 223250 + 50S ribosomal protein L4 L4 is important during the early stages of 50S assembly%3B it initially binds near the 5' end of the 23S rRNA gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0211 YPO0212 YPO0212 rplW rplW 223247 223549 + 50S ribosomal protein L23 binds third domain of 23S rRNA and protein L29%3B part of exit tunnel gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0212 YPO0213 YPO0213 rplB rplB 223566 224390 + 50S ribosomal protein L2 one of the primary rRNA-binding proteins%3B required for association of the 30S and 50S subunits to form the 70S ribosome%2C for tRNA binding and peptide bond formation gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0213 YPO0214 YPO0214 rpsS rpsS 224405 224683 + 30S ribosomal protein S19 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0214 YPO0215 YPO0215 rplV rplV 224698 225030 + 50S ribosomal protein L22 binds specifically to 23S rRNA during the early stages of 50S assembly%3B makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome%3B mutations in this gene result in erythromycin resistance%3B located near peptidyl-transferase center gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0215 YPO0216 YPO0216 rpsC rpsC 225048 225746 + 30S ribosomal protein S3 forms a complex with S10 and S14%3B binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0216 YPO0217 YPO0217 rplP rplP 225759 226169 + 50S ribosomal protein L16 located in the peptidyl transferase center and may be involved in peptidyl transferase activity%3B similar to archaeal L10e gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0217 YPO0218 YPO0218 rpmC rpmC 226169 226360 + 50S ribosomal protein L29 one of the stabilizing components for the large ribosomal subunit gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0218 YPO0219 YPO0219 rpsQ rpsQ 226360 226614 + 30S ribosomal protein S17 primary binding protein%3B helps mediate assembly%3B involved in translation fidelity gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0219 YPO0220 YPO0220 rplN rplN 226795 227166 + 50S ribosomal protein L14 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0220 YPO0221 YPO0221 rplX rplX 227177 227491 + 50S ribosomal protein L24 assembly initiator protein%3B binds to 5' end of 23S rRNA and nucleates assembly of the 50S%3B surrounds polypeptide exit tunnel gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0221 YPO0222 YPO0222 rplE rplE 227506 228045 + 50S ribosomal protein L5 part of 50S and 5S/L5/L18/L25 subcomplex%3B contacts 5S rRNA and P site tRNA%3B forms a bridge to the 30S subunit in the ribosome by binding to S13 gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0222 YPO0222a YPO0222a rpsN rpsN 228059 228364 + 30S ribosomal protein S14 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit%3B similar to what is observed with proteins L31 and L33%2C some proteins in this family contain CXXC motifs that are involved in zinc binding%3B if two copies are present in a genome%2C then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc%3B the proteins in this group do not appear to have the zinc-binding motif gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0222a YPO0223 YPO0223 rpsH rpsH 228398 228790 + 30S ribosomal protein S8 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0223 YPO0224 YPO0224 rplF rplF 228805 229338 + 50S ribosomal protein L6 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein%3B RNA-binding appears to be in the C-terminal domain%3B mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain%3B it has been localized to a region between the base of the L7/L12 stalk and the central protuberance gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0224 YPO0225 YPO0225 rplR rplR 229348 229701 + 50S ribosomal protein L18 binds 5S rRNA along with protein L5 and L25 gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0225 YPO0226 YPO0226 rpsE rpsE 229716 230219 + 30S ribosomal protein S5 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body%3B contacts S4 and S8%3B with S4 and S12 plays a role in translational accuracy%3B mutations in this gene result in spectinomycin resistance gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0226 YPO0227 YPO0227 rpmD rpmD 230222 230401 + 50S ribosomal protein L30 L30 binds domain II of the 23S rRNA and the 5S rRNA%3B similar to eukaryotic protein L7 gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0227 YPO0228 YPO0228 rplO rplO 230405 230839 + 50S ribosomal protein L15 late assembly protein gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0228 YPO0229 YPO0229 secY secY 230847 232178 + preprotein translocase subunit SecY forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0229 YPO0230 YPO0230 rpmJ rpmJ 232212 232328 + 50S ribosomal protein L36 smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group have the motif gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0230 YPO0231 YPO0231 rpsM rpsM 232476 232832 + 30S ribosomal protein S13 located at the top of the head of the 30S subunit%2C it contacts several helices of the 16S rRNA%3B makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5%3B contacts P-site tRNA gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0231 YPO0232 YPO0232 rpsK rpsK 232849 233238 + 30S ribosomal protein S11 located on the platform of the 30S subunit%2C it bridges several disparate RNA helices of the 16S rRNA%3B forms part of the Shine-Dalgarno cleft in the 70S ribosome%3B interacts with S7 and S18 and IF-3 gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0232 YPO0233 YPO0233 rpsD rpsD 233269 233889 + 30S ribosomal protein S4 primary rRNA binding protein%3B nucleates 30S assembly%3B involved in translational accuracy with proteins S5 and S12%3B interacts with protein S5%3B involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA%3B interacts with transcription complex and functions similar to protein NusA in antitermination gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0233 YPO0234 YPO0234 rpoA rpoA 233915 234904 + DNA-directed RNA polymerase subunit alpha catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0234 YPO0235 YPO0235 rplQ rplQ 234945 235334 + 50S ribosomal protein L17 is a component of the macrolide binding site in the peptidyl transferase center gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0235 YPO0236 YPO0236 zntR zntR 235781 236206 + zinc-responsive transcriptional regulator mediates expression of the zinc export protein ZntA in response to high levels of zinc%3B member of MerR family of transcriptional regulators gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0236 YPO0237 YPO0237 YPO0237 236294 236494 + hypothetical protein gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0237 YPO0238 YPO0238 mscL mscL 236604 237017 - large-conductance mechanosensitive channel forms homopentamer%3B channel that opens in response to pressure or hypoosmotic shock gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0238 YPO0239 YPO0239 trkA trkA 237156 238532 - potassium transporter peripheral membrane component involved in potassium uptake%3B found to be peripherally associated with the inner membrane in Escherichia coli%3B contains an NAD-binding domain gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0239 YPO0240 YPO0240 YPO0240 238588 239877 - 16S rRNA methyltransferase GidB catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA%3B SAM-dependent methyltransferase gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0240 YPO0241 YPO0241 fmt fmt 239971 240918 - methionyl-tRNA formyltransferase modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation%3B inactivation of this gene in Escherichia coli severely impairs growth gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0241 YPO0242 YPO0242 def def 240943 241455 - peptide deformylase cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins%3B binds iron(2+) gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0242 YPO0243 YPO0243 YPO0243 241590 242711 + DNA protecting protein DprA gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0243 YPO0244 YPO0244 YPO0244 242719 243156 + hypothetical protein gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0244 YPO0245 YPO0245 YPO0245 243197 243736 + DNA-binding protein gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0245 YPO0245a YPO0245a YPO0245a 243738 244310 + ribosome maturation factor RimN%3B YrdC%3B required for maturation of 16s RNA%3B binds preferentially double stranded RNA gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0245a YPO0246 YPO0246 aroE aroE 244319 245140 + shikimate 5-dehydrogenase AroE%3B catalyzes the conversion of shikimate to 3-dehydroshikimate gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0246 YPO0247 YPO0247 YPO0247 245195 245776 - transferase gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0247 YPO0248 YPO0248 YPO0248 245792 246574 - transposase/IS protein ypmt1.57c gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0248 YPO0249 YPO0249 y1093 y1093 246571 247593 - transposase for insertion sequence IS100 gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0249 YPO0250 YPO0250 YPO0250 247646 248638 + hydrolase gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0250 YPO0251 YPO0251 actP actP 248712 250367 - acetate permease member of the sodium:solute symporter family%3B cotranscribed with the acs gene which encodes acetyl coenzyme A synthase%3B mutations affect acetate uptake gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0251 YPO0252 YPO0252 YPO0252 250364 250675 - hypothetical protein gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0252 YPO0253 YPO0253 acs acs 250732 252690 - acetyl-CoA synthetase Acs%3B catalyzes the conversion of acetate and CoA to acetyl-CoA gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0253 YPO0254 YPO0254 gltP gltP 253545 254861 + glutamate/aspartate:proton symporter carrier protein part of the Na(+)-independent%2C binding-protein-independent glutamate-aspartate transport system gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0254 YPO0255 YPO0255 YPO0255 255039 255671 - two-component response regulator gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0255 YPO0256 YPO0256 YPO0256 255684 258503 - two-component sensor/regulator gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0256 YPO0257 YPO0257 YPO0257 258675 260246 + type III secretion protein gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0257 YPO0258 YPO0258 YPO0258 260248 261462 + type-III secretion protein gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0258 YPO0259 YPO0259 YPO0259 261481 261702 + type III secretion apparatus gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0259 YPO0260a YPO0260a YPO0260a 262506 262721 + type III secretion apparatus gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0260a YPO0261 YPO0261 YPO0261 262718 262966 + type III secretion apparatus gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0261 YPO0262 YPO0262 YPO0262 263064 263315 + type III secretion apparatus gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0262 YPO0263 YPO0263 YPO0263 263312 264043 + type III secretion system apparatus lipoprotein gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0263 YPO0264 YPO0264 YPO0264 264218 264811 + hypothetical protein gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0264 YPO0265 YPO0265 YPO0265 264808 265455 + type III secretion system apparatus protein gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0265 YPO0266 YPO0266 YPO0266 265448 267496 + secretion system apparatus protein SsaV with SsaC forms part of a protein export system across the inner and outer cell membranes%3B part of the Salmonella pathogenicity island 2%3B part of the type III secretion system gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0266 YPO0267 YPO0267 YPO0267 267483 268820 + type III secretion system ATPase gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0267 YPO0268 YPO0268 YPO0268 268817 269218 + type III secretion system apparatus protein gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0268 YPO0269 YPO0269 YPO0269 269617 270537 + type III secretion system protein gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0269 YPO0270 YPO0270 YPO0270 270664 271314 + type III secretion system protein part of a set of proteins involved in the infection of eukaryotic cells%3B in plant pathogens involved in the hypersensitivity response gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0270 YPO0271 YPO0271 YPO0271 271311 271604 + type III secretion apparatus protein gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0271 YPO0272 YPO0272 YPO0272 271606 272400 + type III secretion apparatus protein gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0272 YPO0273 YPO0273 YPO0273 272390 273457 + secretion system apparatus protein SsaU member of a type III secretion system which is part of a pathogenicity island in Salmonella%2C Yersinia and pathogenic Escherichia coli gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0273 YPO0274 YPO0274 YPO0274 273840 275054 + hypothetical protein gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0274 YPO0275 YPO0275 YPO0275 275051 275320 + hypothetical protein gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0275 YPO0276 YPO0276 YPO0276 275398 276384 - LysR family transcriptional regulator gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0276 YPO0277 YPO0277 YPO0277 276551 277837 + transmembrane transport protein gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0277 YPO0278 YPO0278 metC metC 277883 279064 + cystathionine beta-lyase gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0278 YPO0279 YPO0279 hmuV hmuV 279205 280005 - hemin importer ATP-binding subunit with HmuTU is involved in the transport of hemin gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0279 YPO0280 YPO0280 hmuU hmuU 279998 281002 - hemin transport system permease HmuU gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0280 YPO0281 YPO0281 hmuT hmuT 280999 281838 - hemin-binding protein gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0281 YPO0282 YPO0282 hmuS hmuS 281835 282872 - hemin transport protein gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0282 YPO0283 YPO0283 hmuR hmuR 282991 285021 - hemin receptor gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0283 YPO0284 YPO0284 YPO0284 285436 286086 - hypothetical protein gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0284 YPO0285 YPO0285 YPO0285 286120 286665 - hypothetical protein gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0285 YPO0286 YPO0286 YPO0286 286662 287975 - coproporphyrinogen III oxidase catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0286 YPO0287 YPO0287 YPO0287 288316 289116 - methylenetetrahydrofolate reductase gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0287 YPO0288 YPO0288 YPO0288 289431 289919 - hypothetical protein gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0288 YPO0289 YPO0289 YPO0289 290316 291275 - ATP/GTP-binding protein gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0289 YPO0290 YPO0290 YPO0290 291275 292354 - hypothetical protein gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0290 YPO0291 YPO0291 YPO0291 292347 293159 - hypothetical protein gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0291 YPO0292 YPO0292 YPO0292 293152 294288 - hypothetical protein gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0292 YPO0293 YPO0293 YPO0293 294300 295361 - hypothetical protein gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0293 YPO0294 YPO0294 terZ terZ 295637 296230 + tellurium resistance protein gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0294 YPO0295 YPO0295 terA terA 296230 297414 + tellurite resistance protein gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0295 YPO0296 YPO0296 terB terB 297447 297902 + tellurite resistance protein gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0296 YPO0297 YPO0297 terC terC 297924 298961 + tellurium resistance protein gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0297 YPO0298 YPO0298 terD terD 299025 299603 + tellurium resistance protein gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0298 YPO0299 YPO0299 terE terE 299787 300362 + tellurium resistance protein gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0299 YPO0300 YPO0300 tnp tnp 300554 301012 + transposase for the IS1541 insertion element gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0300 YPO0301 YPO0301 YPO0301 301786 302424 + hypothetical protein gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0301 YPO0302 YPO0302 YPO0302 302675 305053 + outer membrane fimbrial usher protein gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0302 YPO0303 YPO0303 YPO0303 305125 305868 + periplasmic chaperone protein member of the periplasmic pilus chaperone family of proteins gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0303 YPO0304 YPO0304 YPO0304 305876 306133 + hypothetical protein No significant database hits gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0304 YPO0306 YPO0306 YPO0306 307245 308645 + hypothetical protein No significant database hits gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0306 YPO0308 YPO0308 YPO0308 309654 311711 + oxidoreductase gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0308 YPO0309 YPO0309 YPO0309 312055 315771 - hypothetical protein gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0309 YPO0310 YPO0310 ubiC ubiC 316696 317220 + chorismate pyruvate lyase catalyzes the formation of 4-hydroxybenzoate from chorismate gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0310 YPO0311 YPO0311 ubiA ubiA 317386 318252 + 4-hydroxybenzoate octaprenyltransferase catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate%2C as part of the ubiquinone biosynthesis pathway gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0311 YPO0312 YPO0312 plsB plsB 318433 320910 - glycerol-3-phosphate acyltransferase PlsB%3B catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0312 YPO0313 YPO0313 dgkA dgkA 321038 321409 + diacylglycerol kinase gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0313 YPO0314 YPO0314 lexA lexA 321534 322142 + LexA repressor Represses a number of genes involved in the response to DNA damage gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0314 YPO0315 YPO0315 YPO0315 322302 322811 - zinc uptake transcriptional repressor Acts as a negative controlling element%2C employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0315 YPO0316 YPO0316 YPO0316 323066 324103 + tRNA-dihydrouridine synthase A gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0316 YPO0318 YPO0318 pspG pspG 324619 324837 + phage shock protein G coordinately regulated along with pspA%3B PspF-dependent induction in response to secretin overexpression in Yersinia gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0318 YPO0319 YPO0319 qor qor 325182 326165 - quinone oxidoreductase%2C NADPH-dependent gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0319 YPO0320 YPO0320 dnaB dnaB 326497 327903 + replicative DNA helicase unwinds double stranded DNA gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0320 YPO0321 YPO0321 alr alr 328000 329079 + alanine racemase converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0321 YPO0322 YPO0322 tyrB tyrB 329265 330458 + aromatic amino acid aminotransferase catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0322 YPO0323 YPO0323 YPO0323 330985 331344 + hypothetical protein gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0323 YPO0324 YPO0324 uvrA uvrA 331437 334280 - excinuclease ABC subunit A The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB%2C the uvrA molecules dissociate gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0324 YPO0325 YPO0325 ssb ssb 334738 335286 + single-stranded DNA-binding protein binds to single stranded DNA and PriA helcase facilitate replication restart gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0325 YPO0326 YPO0326 YPO0326 335533 335847 - hypothetical protein gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0326 YPO0327 YPO0327 YPO0327 335861 337009 - alcohol dehydrogenase gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0327 YPO0328 YPO0328 rhaD rhaD 337076 337900 - rhamnulose-1-phosphate aldolase gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0328 YPO0329 YPO0329 rhaA rhaA 337913 339169 - L-rhamnose isomerase catalyzes the formation of L-rhamnulose from L-rhamnose gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0329 YPO0330 YPO0330 rhaB rhaB 339166 340623 - rhamnulokinase catalyzes the ATP-dependent phosphorylation of rhamnulose gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0330 YPO0331 YPO0331 YPO0331 340646 340828 + hypothetical protein No significant database hits gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0331 YPO0332 YPO0332 rhaS rhaS 341050 341871 + transcriptional activator RhaS activates the expression of the rhaBAD operon and rhaT gene gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0332 YPO0333 YPO0333 rhaR rhaR 342004 342876 + transcriptional activator RhaR activates the expression of rhaRS in response to L-rhamnose gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0333 YPO0334 YPO0334 rhaT rhaT 343025 344059 - rhamnose-proton symporter transports L-rhamnose and L-lyxose into the cell gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0334 YPO0337 YPO0337 YPO0337 344915 345340 - hypothetical protein No significant database hits gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0337 YPO0338 YPO0338 YPO0338 345570 345737 + hypothetical protein No significant database hits gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0338 YPO0339 YPO0339 YPO0339 345752 348322 + enhancing factor gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0339 YPO0341 YPO0341 YPO0341 348976 349551 - transcriptional regulator gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0341 YPO0342 YPO0342 YPO0342 349971 351986 + oxidoreductase Fe-S binding subunit unknown function%3B in E. coli the aegA gene is regulated by Fnr%2C NarXL%2C and NarQ (but not ArcA)%2C induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic) gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0342 YPO0343 YPO0343 hydN hydN 352009 352566 + 4Fe-4S ferredoxin gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0343 YPO0344 YPO0344 fdhF fdhF 352589 354736 + formate dehydrogenase H gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0344 YPO0345 YPO0345 dipZ dipZ 354798 356585 - thiol:disulfide interchange protein two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm%3B DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0345 YPO0346 YPO0346 YPO0346 356561 356920 - divalent-cation tolerance protein CutA copper binding protein required for copper tolerance%3B involved in resistance toward heavy metals gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0346 YPO0347 YPO0347 dcuA dcuA 357105 358406 - anaerobic C4-dicarboxylate transporter functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate%3B similar to dcuB gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0347 YPO0348 YPO0348 aspA aspA 358526 359962 - aspartate ammonia-lyase catalyzes the formation of fumarate from aspartate gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0348 YPO0349 YPO0349 fxsA fxsA 360410 360988 + FxsA protein F exclusion of bacteriophage T7%3B overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7%3B interacts with the F plasmid-encoded PifA protein%3B inner membrane protein gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0349 YPO0350 YPO0350 groES groES 361243 361536 + co-chaperonin GroES 10 kDa chaperonin%3B Cpn10%3B GroES%3B forms homoheptameric ring%3B binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it%3B folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES%3B release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0350 YPO0351 YPO0351 groEL groEL 361583 363229 + molecular chaperone GroEL 60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is essential for growth gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0351 YPO0352 YPO0352 YPO0352 363865 364251 + lipoprotein gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0352 YPO0353 YPO0353 YPO0353 364536 365564 - hypothetical protein gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0353 YPO0354 YPO0354 efp efp 365600 366166 + elongation factor P Involved in peptide bond synthesis%3B alters the affinity of the ribosome for aminoacyl-tRNA gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0354 YPO0355 YPO0355 sugE sugE 366413 366727 + quaternary ammonium compound-resistance protein SugE member of the SMR family of proton-dependent drug efflux transporters%3B quaternary ammonium compound efflux pump%3B confers resistance to cetylpyridinium%2C cetyldimethylethyl ammonium and cetrimide cations gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0355 YPO0356 YPO0356 tnp tnp 366946 367404 - transposase for the IS1541 insertion element gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0356 YPO0357 YPO0357 frdD frdD 367602 367958 - fumarate reductase subunit D in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0357 YPO0358 YPO0358 frdC frdC 367975 368367 - fumarate reductase subunit C part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0358 YPO0359 YPO0359 frdB frdB 368384 369118 - fumarate reductase iron-sulfur subunit part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0359 YPO0360 YPO0360 frdA frdA 369111 370934 - fumarate reductase flavoprotein subunit part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0360 YPO0362 YPO0362 genX genX 371392 372369 + lysyl-tRNA synthetase lysine--tRNA ligase beta chain%3B poxA%3B class II aminoacyl tRNA synthetase%3B catalyzes a two-step reaction%3B first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0362 YPO0363 YPO0363 YPO0363 372490 375849 - hypothetical protein gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0363 YPO0364 YPO0364 psd psd 375873 376754 - phosphatidylserine decarboxylase catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0364 YPO0365 YPO0365 YPO0365 377079 378131 - ribosome-associated GTPase EngC%3B RsgA%3B CpgA%3B circularly permuted GTPase%3B ribosome small subunit-dependent GTPase A%3B has the pattern G4-G1-G3 as opposed to other GTPases%3B interacts strongly with 30S ribosome which stimulates GTPase activity gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0365 YPO0366 YPO0366 orn orn 378331 378876 + oligoribonuclease 3'-5' exoribonuclease specific for small oligoribonuclotides gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0366 YPO0367 YPO0367 YPO0367 379821 381056 - (Fe-S)-binding protein gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0367 YPO0368 YPO0368 YPO0368 381055 382569 + hypothetical protein gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0368 YPO0369 YPO0369 YPO0369 382580 383050 + ATPase possibly involved in cell wall synthesis gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0369 YPO0370 YPO0370 YPO0370 383190 384971 + N-acetylmuramoyl-L-alanine amidase gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0370 YPO0371 YPO0371 mutL mutL 384987 386894 + DNA mismatch repair protein This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0371 YPO0372 YPO0372 miaA miaA 386887 387828 + tRNA delta(2)-isopentenylpyrophosphate transferase IPP transferase%3B isopentenyltransferase%3B involved in tRNA modification%3B in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil%3B further tRNA modifications may occur%3B mutations in miaA result in defects in translation efficiency and fidelity gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0372 YPO0373 YPO0373 hfq hfq 387944 388249 + RNA-binding protein Hfq Stimulates the elongation of poly(A) tails gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0373 YPO0374 YPO0374 hflX hflX 388348 389634 + GTPase HflX involved in modulation of proteins HflK and HflC%3B part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0374 YPO0375 YPO0375 hflK hflK 389875 391134 + FtsH protease regulator HflK with HflC inhibits proteolysis of lambda cII protein by FtsH gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0375 YPO0376 YPO0376 hflC hflC 391138 392142 + FtsH protease regulator HflC with HflK inhibits proteolysis of lambda cII protein by FtsH gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0376 YPO0377 YPO0377 YPO0377 392314 392514 + hypothetical protein gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0377 YPO0378 YPO0378 purA purA 392614 393912 + adenylosuccinate synthetase catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0378 YPO0379 YPO0379 YPO0379 394281 394706 + transcriptional repressor NsrR negatively regulates the transcription of genes upregulated by nitrosative stress gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0379 YPO0380 YPO0380 rnr rnr 394947 397481 + exoribonuclease R 3'-5'exoribonuclease that acts nonspecifically on poly(A)%2C poly(U) and ribosomal RNAs gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0380 YPO0381 YPO0381 YPO0381 397600 398340 + 23S rRNA (guanosine-2'-O-)-methyltransferase Specifically methylates the ribose of guanosine 2251 in 23S rRNA gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0381 YPO0383 YPO0383 aidB aidB 398748 400391 + isovaleryl CoA dehydrogenase catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0383 YPO0384 YPO0384 YPO0384 400463 400774 - biofilm stress and motility protein A in Escherichia coli%2C mutation of this gene affects biofilm maturation%2C stress response%2C and motility gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0384 YPO0385 YPO0385 YPO0385 401114 401896 - transposase/IS protein ypmt1.57c gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0385 YPO0386 YPO0386 y1093 y1093 401893 402915 - transposase for insertion sequence IS100 gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0386 YPO0387 YPO0387 YPO0387 403049 405112 + hypothetical protein gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0387 YPO0388 YPO0388 YPO0388 405109 406425 + hypothetical protein gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0388 YPO0391 YPO0391 YPO0391 407449 408774 + modification methylase gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0391 YPO0392 YPO0392 YPO0392 408824 409546 + hypothetical protein gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0392 YPO0392a YPO0392a YPO0392a 407047 407310 - hypothetical protein gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0392a YPO0393 YPO0393 YPO0393 409656 410891 + hypothetical protein gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0393 YPO0394 YPO0394 YPO0394 411235 411522 - hypothetical protein No significant database hits gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0394 YPO0394a YPO0394a YPO0394a 411724 411921 - hypothetical protein gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0394a YPO0396 YPO0396 YPO0396 412139 413551 + hypothetical protein gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0396 YPO0397 YPO0397 YPO0397 413548 414702 + hypothetical protein gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0397 YPO0398 YPO0398 YPO0398 414848 415894 - M48 peptidase family protein gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0398 YPO0399 YPO0399 YPO0399 415905 417101 - hypothetical protein gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0399 YPO0400 YPO0400 YPO0400 417807 418343 + hypothetical protein No significant database hits gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0400 YPO0401 YPO0401 YPO0401 418345 419220 + transcriptional regulator gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0401 YPO0402 YPO0402 YPO0402 419213 419557 - PTS system fructose-family transporter subunit IIB FrwD with FrwB%2C FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell%3B phosphorylated by EIIA%3B FrwB homolog gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0402 YPO0403 YPO0403 YPO0403 419650 419970 - PTS system fructose family transporter subunit IIB FrwB with FrwC%2C FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell%3B cytoplasmic protein that interacts with complex EIIA%3B contains the second phosphorylation site of the PTS gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0403 YPO0404 YPO0404 YPO0404 420311 421396 - PTS system fructose-family transporter subunit IIC FrwC with FrwB%2C FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell%3B forms translocation channel and contains the specific substrate-binding site gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0404 YPO0405 YPO0405 YPO0405 421758 424316 + phosphoenolpyruvate-protein phosphotransferase gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0405 YPO0406 YPO0406 YPO0406 424378 424869 - hypothetical protein gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0406 YPO0407 YPO0407 YPO0407 425170 425460 - autoinducer-2 (AI-2) modifying protein LsrG gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0407 YPO0408 YPO0408 YPO0408 425524 426399 - aldolase gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0408 YPO0409 YPO0409 YPO0409 426455 427474 - substrate-binding protein gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0409 YPO0410 YPO0410 YPO0410 427540 428541 - ABC transporter permease gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0410 YPO0411 YPO0411 YPO0411 428538 429593 - ABC transporter permease gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0411 YPO0412 YPO0412 YPO0412 429587 431170 - ABC transporter ATP-binding protein gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0412 YPO0414 YPO0414 YPO0414 431515 432502 + gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0414 YPO0415 YPO0415 YPO0415 432673 434265 + autoinducer-2 (AI-2) kinase gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0415 YPO0416 YPO0416 YPO0416 434734 435774 + lipopolysaccharide core biosynthesis protein gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0416 YPO0417 YPO0417 YPO0417 435822 437054 + O-antigen biosynthesis protein gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0417 YPO0419 YPO0419 YPO0419 437864 438097 + hypothetical protein gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0419 YPO0420 YPO0420 YPO0420 438149 439231 + lipoprotein gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0420 YPO0421 YPO0421 YPO0421 439231 442317 + multi-drug efflux protein gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0421 YPO0422 YPO0422 YPO0422 442678 443010 - hypothetical protein No significant database hits gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0422 YPO0424 YPO0424 YPO0424 443813 444898 + pectinesterase gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0424 YPO0425 YPO0425 hmsT hmsT 445439 446611 - HmsT protein gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0425 YPO0426 YPO0426 YPO0426 446860 447192 + hypothetical protein gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0426 YPO0427 YPO0427 rsmC rsmC 447705 448748 - 16S ribosomal RNA m2G1207 methyltransferase 16S rRNA M2G1207 methyltransferase%3B one of many enzymes that modify bases of the ribosomal RNA%3B this enzyme methylates the G at position 1207 of the small ribosomal subunit gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0427 YPO0428 YPO0428 holD holD 448861 449298 + DNA polymerase III subunit psi with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0428 YPO0429 YPO0429 rimI rimI 449243 449686 + ribosomal-protein-alanine N-acetyltransferase alanine acetyltransferase that specifically acetylates ribosomal protein S18 gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0429 YPO0430 YPO0430 prfC prfC 449865 451454 + peptide chain release factor 3 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred%3B GDP/GTP-binding protein gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0430 YPO0431 YPO0431 osmY osmY 451781 452395 + hypothetical protein gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0431 YPO0432 YPO0432 YPO0432 452562 452723 + hypothetical protein gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0432 YPO0433 YPO0433 YPO0433 452797 454068 + hypothetical protein gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0433 YPO0434 YPO0434 YPO0434 454105 454893 + metalloenzyme gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0434 YPO0435 YPO0435 YPO0435 455428 456699 + Na+ dependent nucleoside transporter family protein gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0435 YPO0436 YPO0436 deoC deoC 457275 458072 + deoxyribose-phosphate aldolase catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0436 YPO0437 YPO0437 deoA deoA 458193 459511 + gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0437 YPO0439 YPO0439 deoB deoB 459643 460866 + phosphopentomutase catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0439 YPO0440 YPO0440 deoD deoD 460991 461710 + purine nucleoside phosphorylase catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0440 YPO0441 YPO0441 smp smp 461822 462523 - hypothetical protein gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0441 YPO0442 YPO0442 serB serB 462755 463735 + phosphoserine phosphatase catalyzes the formation of serine from O-phosphoserine gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0442 YPO0443 YPO0443 radA radA 463823 465205 + DNA repair protein RadA Sms%3B stabilizes the strand-invasion intermediate during the DNA repair%3B involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0443 YPO0444 YPO0444 nadR nadR 465364 466635 + nicotinamide-nucleotide adenylyltransferase catalyzes the formation of NAD(+) from nicotinamide ribonucleotide gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0444 YPO0445 YPO0445 YPO0445 466792 467922 + hypothetical protein gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0445 YPO0446 YPO0446 yjjK yjjK 468068 469731 - gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0446 YPO0448 YPO0448 YPO0448 469914 470420 - lipoprotein gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0448 YPO0449 YPO0449 YPO0449 470426 471703 - hypothetical protein gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0449 YPO0450 YPO0450 YPO0450 471724 472347 - hypothetical protein gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0450 YPO0451 YPO0451 YPO0451 472722 475448 - cation-transporting P-type ATPase gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0451 YPO0452 YPO0452 slt slt 476018 477937 + lytic murein transglycosylase catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0452 YPO0453 YPO0453 trpR trpR 478188 478565 + Trp operon repressor When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0453 YPO0454 YPO0454 YPO0454 478562 479104 - NTPase pyrophosphatase%3B has activity against dUTP and dITP%3B the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226%3B in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms%3B in Escherichia coli overexpression of this gene leads to resistance to an HMP analog gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0454 YPO0455 YPO0455 gpmB gpmB 479198 479845 + phosphoglycerate mutase catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0455 YPO0456 YPO0456 rob rob 479842 480708 - right origin-binding protein gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0456 YPO0457 YPO0457 creA creA 480934 481401 + hypothetical protein gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0457 YPO0458 YPO0458 arcA arcA 481575 482291 - two-component response regulator gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0458 YPO0459 YPO0459 thrA thrA 483395 485854 + bifunctional aspartokinase I/homoserine dehydrogenase I multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0459 YPO0460 YPO0460 thrB thrB 485857 486786 + homoserine kinase catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0460 YPO0461 YPO0461 thrC thrC 486790 488079 + threonine synthase catalyzes the formation of L-threonine from O-phospho-L-homoserine gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0461 YPO0462 YPO0462 YPO0462 488896 489672 - hypothetical protein gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0462 YPO0463 YPO0463 talB talB 490204 491157 + transaldolase B gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0463 YPO0464 YPO0464 mogA mogA 491445 492032 + molybdenum cofactor biosynthesis protein MogA forms a trimer%3B related to eukaryotic protein gephyrin%3B functions during molybdenum cofactor biosynthesis gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0464 YPO0465 YPO0465 YPO0465 492160 493548 + transport protein gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0465 YPO0466 YPO0466 YPO0466 493618 496065 - hypothetical protein No significant database matches. CDS DNA contains low GC content%2C 35.33%25 gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0466 YPO0467 YPO0467 yaaH yaaH 496354 496965 - hypothetical protein gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0467 YPO0468 YPO0468 dnaK dnaK 497339 499249 + molecular chaperone DnaK heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0468 YPO0469 YPO0469 dnaJ dnaJ 499361 500500 + molecular chaperone DnaJ chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0469 YPO0470 YPO0470 nhaA nhaA 500743 501927 + pH-dependent sodium/proton antiporter exports sodium by using the electrochemical proton gradient to allow protons into the cell%3B functions in adaptation to high salinity and alkaline pH%3B activity increases at higher pH%3B downregulated at acidic pH gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0470 YPO0471 YPO0471 nhaR nhaR 502057 502956 + transcriptional activator NhaR Na+/H+ antiporter regulatory protein%3B activates the genes nhaA and osmC gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0471 YPO0472 YPO0472 rpsT rpsT 503087 503350 - 30S ribosomal protein S20 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0472 YPO0474 YPO0474 ribF ribF 503765 504703 + bifunctional riboflavin kinase/FMN adenylyltransferase catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN%3B in Bacillus the ribC gene has both flavokinase and FAD synthetase activities gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0474 YPO0475 YPO0475 ileS ileS 504735 507551 + isoleucyl-tRNA synthetase IleRS%3B catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile)%3B since isoleucine and other amino acids such as valine are similar%2C there are additional editing function in this enzyme%3B one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile)%3B there are two active sites%2C one for aminoacylation and one for editing%3B class-I aminoacyl-tRNA synthetase family type 1 subfamily%3B some organisms carry two different copies of this enzyme gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0475 YPO0476 YPO0476 lspA lspA 507551 508060 + lipoprotein signal peptidase lipoprotein signal peptidase%3B integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0476 YPO0476a YPO0476a fkpB fkpB 508128 508586 + FKBP-type peptidylprolyl isomerase gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0476a YPO0477 YPO0477 ispH ispH 508567 509520 + 4-hydroxy-3-methylbut-2-enyl diphosphate reductase catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP)%3B functions in the nonmevalonate isoprenoid biosynthesis pathway gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0477 YPO0479 YPO0479 tnp tnp 509902 510360 + transposase for the IS1541 insertion element gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0479 YPO0480 YPO0480 dapB dapB 510813 511634 + dihydrodipicolinate reductase catalyzes the reduction of 2%2C3-dihydrodipicolinate to 2%2C3%2C4%2C5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0480 YPO0481 YPO0481 carA carA 512107 513282 + carbamoyl phosphate synthase small subunit catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways%3B forms an octamer composed of four CarAB dimers gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0481 YPO0482 YPO0482 carB carB 513298 516531 + carbamoyl phosphate synthase large subunit four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate%3B CarB is responsible for the amidotransferase activity gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0482 YPO0483 YPO0483 YPO0483 516759 517373 - LysE type translocator gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0483 YPO0484 YPO0484 yjjP yjjP 517697 518497 + hypothetical protein gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0484 YPO0485 YPO0485 YPO0485 518488 518949 + hypothetical protein gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0485 YPO0486 YPO0486 folA folA 519099 519581 + dihydrofolate reductase catalyzes the reduction of dihydrofolate to tetrahydrofolate gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0486 YPO0487 YPO0487 tnp tnp 519793 520251 + transposase for the IS1541 insertion element gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0487 YPO0489 YPO0489 YPO0489 521134 521598 + hypothetical protein gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0489 YPO0489a YPO0489a YPO0489a 520355 520519 - hypothetical protein gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0489a YPO0490 YPO0490 apaH apaH 521688 522557 - diadenosine tetraphosphatase hydrolyzes P(1)%2CP(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0490 YPO0491 YPO0491 apaG apaG 522574 522951 - ApaG protein protein associated with Co2+ and Mg2+ efflux gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0491 YPO0492 YPO0492 ksgA ksgA 522965 523783 - dimethyladenosine transferase catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA%3B mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0492 YPO0493 YPO0493 pdxA pdxA 523776 524771 - 4-hydroxythreonine-4-phosphate dehydrogenase catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0493 YPO0494 YPO0494 surA surA 524755 526059 - peptidyl-prolyl cis-trans isomerase SurA Chaperone involved in the folding of extracytoplasmic proteins%2C especially OmpA%2C OmpF and LamB gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0494 YPO0495 YPO0495 imp imp 526127 528469 - organic solvent tolerance protein determines N-hexane tolerance and is involved in outer membrane permeability gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0495 YPO0496 YPO0496 djlA djlA 528654 529487 + Dna-J like membrane chaperone protein functions as a co-chaperone with DnaK%3B involved in regulation of colanic acid capsule%3B inner membrane protein%3B dimerized via transmembrane domain%3B J-like domain is cytoplasmic and can functionally substitute for DnaJ%3B stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0496 YPO0497 YPO0497 rluA rluA 529785 530405 - ribosomal large subunit pseudouridine synthase A gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0497 YPO0498 YPO0498 YPO0498 531628 532371 - hypothetical protein No significant database hits gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0498 YPO0499 YPO0499 YPO0499 532701 533714 + hypothetical protein gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0499 YPO0500 YPO0500 YPO0500 533725 534285 + hypothetical protein gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0500 YPO0501 YPO0501 YPO0501 534285 535796 + hypothetical protein gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0501 YPO0502 YPO0502 YPO0502 535959 536477 + hypothetical protein gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0502 YPO0503 YPO0503 YPO0503 536551 536994 + hypothetical protein gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0503 YPO0504 YPO0504 YPO0504 537027 538871 + hypothetical protein gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0504 YPO0505 YPO0505 YPO0505 538864 539847 + hypothetical protein gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0505 YPO0506 YPO0506 clpB clpB 539850 542453 + Clp ATPase gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0506 YPO0507 YPO0507 YPO0507 542557 544905 + hypothetical protein gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0507 YPO0508 YPO0508 YPO0508 544918 547137 + gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0508 YPO0510 YPO0510 YPO0510 547163 548266 + hypothetical protein gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0510 YPO0511 YPO0511 YPO0511 548259 548876 + hypothetical protein No significant database hits gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0511 YPO0511a YPO0511a YPO0511a 548882 549247 + hypothetical protein gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0511a YPO0512 YPO0512 YPO0512 549240 549731 + lipoprotein gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0512 YPO0513 YPO0513 YPO0513 549851 551206 + hypothetical protein gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0513 YPO0514 YPO0514 YPO0514 551203 552813 + hypothetical protein gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0514 YPO0515 YPO0515 YPO0515 552863 556315 + hypothetical protein gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0515 YPO0516 YPO0516 YPO0516 556337 556690 + hypothetical protein No significant database hits gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0516 YPO0517 YPO0517 hepA hepA 556946 559852 - ATP-dependent helicase HepA transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP%2C when it is trapped or immobilized on tightly supercoiled DNA gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0517 YPO0518 YPO0518 dinA dinA 560313 562682 - DNA polymerase II Has polymerase%2C DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0518 YPO0519 YPO0519 YPO0519 562878 563645 + DedA family membrane protein gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0519 YPO0520 YPO0520 thiQ thiQ 563714 564397 - thiamine transporter ATP-binding protein with TbpA and ThiP is part of the thiamine and TPP transport system gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0520 YPO0521 YPO0521 thiP thiP 564411 565970 - thiamine transporter membrane protein permease%3B with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell%3B repressed in presence of exogenous thiamine gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0521 YPO0522 YPO0522 tbpA tbpA 565994 566986 - thiamine transporter substrate binding subunit part of the thiamine and TPP transport system tbpA-thiPQ gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0522 YPO0523 YPO0523 YPO0523 567541 567825 + hypothetical protein gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0523 YPO0524 YPO0524 YPO0524 567926 569587 - transcriptional regulator SgrR activates sgrS under glucose-phosphate stress conditions gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0524 YPO0527 YPO0527 YPO0527 571251 572033 - transposase/IS protein ypmt1.57c gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0527 YPO0528 YPO0528 y1093 y1093 572030 573052 - transposase for insertion sequence IS100 gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0528 YPO0530 YPO0530 leuD leuD 573632 574234 - isopropylmalate isomerase small subunit catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis%3B forms a heterodimer of LeuC/D gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0530 YPO0531 YPO0531 leuC leuC 574249 575679 - isopropylmalate isomerase large subunit dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0531 YPO0532 YPO0532 leuB leuB 575681 576772 - 3-isopropylmalate dehydrogenase catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0532 YPO0533 YPO0533 leuA leuA 576775 578337 - 2-isopropylmalate synthase catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0533 YPO0534 YPO0534 tnp tnp 578484 578942 - transposase for the IS1541 insertion element gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0534 YPO0535 YPO0535 leuO leuO 580264 581220 + leucine transcriptional activator activator for leuABCD operon%3B member of LysR family of transcriptional activators gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0535 YPO0536 YPO0536 YPO0536 581549 581755 + hypothetical protein Doubtful CDS with no significant database hits gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0536 YPO0537 YPO0537 YPO0537 581752 583557 + AMP-binding protein gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0537 YPO0538 YPO0538 YPO0538 583588 583698 + hypothetical protein Doubtful CDS with no significant database hits gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0538 YPO0539 YPO0539 ilvI ilvI 584017 585744 + acetolactate synthase 3 catalytic subunit catalyzes the formation of 2-acetolactate from pyruvate%2C leucine sensitive gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0539 YPO0540 YPO0540 ilvH ilvH 585747 586241 + acetolactate synthase 3 regulatory subunit with IlvI catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase 3 small subunit gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0540 YPO0541 YPO0541 tnp tnp 586440 586898 + transposase for the IS1541 insertion element gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0541 YPO0542 YPO0542 YPO0542 587220 587336 - hypothetical protein Doubtful CDS with no significant database hits gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0542 YPO0543 YPO0543 fruR fruR 587403 588413 + DNA-binding transcriptional regulator FruR binds D-fructose as an inducer%3B involved in regulation of operons for central pathways of carbon metabolism gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0543 YPO0544 YPO0544 YPO0544 588544 588990 - hypothetical protein gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0544 YPO0546 YPO0546 YPO0546 590086 590544 + cell division protein MraZ MraZ%3B UPF0040%3B crystal structure shows similarity to AbrB gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0546 YPO0547 YPO0547 mraW mraW 590547 591509 + S-adenosyl-methyltransferase MraW gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0547 YPO0548 YPO0548 ftsL ftsL 591506 591823 + cell division protein FtsL membrane bound cell division protein at septum containing leucine zipper motif gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0548 YPO0549 YPO0549 ftsI ftsI 591889 593652 + penicillin-binding protein 3 gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0549 YPO0550 YPO0550 murE murE 593654 595126 + UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase involved in cell wall formation%3B peptidoglycan synthesis%3B cytoplasmic enzyme%3B catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0550 YPO0551 YPO0551 murF murF 595123 596499 + UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0551 YPO0552 YPO0552 mraY mraY 596493 597575 + phospho-N-acetylmuramoyl-pentapeptide-transferase First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0552 YPO0553 YPO0553 murD murD 597578 598894 + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B involved in peptidoglycan biosynthesis%3B cytoplasmic%3B catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0553 YPO0554 YPO0554 ftsW ftsW 598894 600096 + cell division protein FtsW integral membrane protein involved in stabilizing FstZ ring during cell division gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0554 YPO0555 YPO0555 murG murG 600093 601163 + undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B involved in cell wall formation%3B inner membrane-associated%3B last step of peptidoglycan synthesis gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0555 YPO0556 YPO0556 murC murC 601301 602776 + UDP-N-acetylmuramate--L-alanine ligase Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0556 YPO0557 YPO0557 ddl ddl 602769 603689 + D-alanine--D-alanine ligase D-alanine--D-alanine ligase%3B DdlA%3B DdlB%3B cytoplasmic%3B catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis%3B there are two forms of this enzyme in Escherichia coli gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0557 YPO0558 YPO0558 ftsQ ftsQ 603691 604518 + cell division protein FtsQ involved in septum formation gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0558 YPO0559 YPO0559 ftsA ftsA 604545 605801 + cell division protein FtsA ATP-binding involved in recruitment of FtsK to Z ring%3B essential cell division protein%3B colocalizes with FtsZ through direct interaction to the septal ring structure%3B structurally similar to eukaryotic actin%3B binds directly to the cell membrane gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0559 YPO0560 YPO0560 ftsZ ftsZ 605874 607025 + cell division protein FtsZ GTPase%3B similar structure to tubulin%3B forms ring-shaped polymers at the site of cell division%3B other proteins such as FtsA%2C ZipA%2C and ZapA%2C interact with and regulate FtsZ function gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0560 YPO0561 YPO0561 lpxC lpxC 607125 608045 + UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase zinc-dependent%3B catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0561 YPO0562 YPO0562 YPO0562 608212 608742 - hypothetical protein gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0562 YPO0563 YPO0563 YPO0563 608765 609298 + SecA regulator SecM secM translational pause allows for the initiation of secA translation gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0563 YPO0564 YPO0564 secA secA 609376 612090 + preprotein translocase subunit SecA functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B proteins in this cluster correspond SecA1%3B SecA2 is not essential and seems to play a role in secretion of a subset of proteins gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0564 YPO0565 YPO0565 mutT mutT 612385 612771 + nucleoside triphosphate pyrophosphohydrolase gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0565 YPO0566 YPO0566 YPO0566 613033 613815 - transposase/IS protein ypmt1.57c gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0566 YPO0567 YPO0567 y1093 y1093 613812 614834 - transposase for insertion sequence IS100 gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0567 YPO0568 YPO0568 YPO0568 615113 615481 - hypothetical protein gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0568 YPO0569 YPO0569 YPO0569 615812 616096 - hypothetical protein gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0569 YPO0569a YPO0569a YPO0569a 616093 616488 - hypothetical protein gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0569a YPO0570 YPO0570 yqjD yqjD 616491 616796 - hypothetical protein gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0570 YPO0571 YPO0571 YPO0571 616801 616947 - hypothetical protein No significant database hits gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0571 YPO0572 YPO0572 YPO0572 616951 617331 - hypothetical protein gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0572 YPO0573 YPO0573 YPO0573 617557 617946 - hypothetical protein gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0573 YPO0574 YPO0574 yqjA yqjA 617943 618641 - DedA family membrane protein gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0574 YPO0575 YPO0575 YPO0575 618919 619473 - lipoprotein Doubtful CDS. No significant database matches gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0575 YPO0576 YPO0576 exuR exuR 619701 620495 - DNA-binding transcriptional repressor ExuR regulates the exuT%2C uxaCA and uxuRAB operons which encode genes involved in hexuronate utilization. gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0576 YPO0577 YPO0577 exuT exuT 620758 622062 - ExuT transport protein gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0577 YPO0579 YPO0579 uxaC uxaC 622807 624216 + glucuronate isomerase catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate%3B functions in glucuronic and galacturonic metabolism gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0579 YPO0580 YPO0580 uxaB uxaB 624415 625866 + altronate oxidoreductase catalyzes the formation of D-tagaturonate from D-altronate gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0580 YPO0581 YPO0581 uxaA uxaA 625877 627367 + altronate hydrolase gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0581 YPO0582 YPO0582 YPO0582 627520 628050 + hypothetical protein gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0582 YPO0583 YPO0583 tnp tnp 628168 628626 - transposase for the IS1541 insertion element gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0583 YPO0584 YPO0584 YPO0584 628827 630095 - serine/threonine transporter SstT involved in the import of serine and threonine coupled with the import of sodium gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0584 YPO0585 YPO0585 YPO0585 630618 631613 - MocA family oxidoreductase gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0585 YPO0586 YPO0586 YPO0586 631816 632325 - hypothetical protein gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0586 YPO0587 YPO0587 YPO0587 632564 635548 - autotransporter protein gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0587 YPO0588 YPO0588 YPO0588 636017 637204 + methyltransferase gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0588 YPO0589 YPO0589 fadH fadH 637320 639341 - 2%2C4-dienoyl-CoA reductase gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0589 YPO0590 YPO0590 hdeD hdeD 639554 640123 - acid-resistance membrane protein gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0590 YPO0592 YPO0592 YPO0592 640514 642013 - kinase protein gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0592 YPO0593 YPO0593 YPO0593 642045 643778 - hypothetical protein gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0593 YPO0594 YPO0594 YPO0594 643834 644817 - hypothetical protein gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0594 YPO0595 YPO0595 YPO0595 644919 645557 - hypothetical protein gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0595 YPO0596 YPO0596 terX terX 645559 646200 - tellurium resistance protein gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0596 YPO0597 YPO0597 terY terY 646233 646871 - tellurium resistance protein gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0597 YPO0598 YPO0598 YPO0598 647586 649274 + hemolysin activator protein gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0598 YPO0599 YPO0599 YPO0599 649319 659206 + adhesin gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0599 YPO0600 YPO0600 YPO0600 659203 659436 + hypothetical protein Poor database matches. Doubtful CDS gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0600 YPO0601 YPO0601 YPO0601 659702 659929 + hypothetical protein gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0601 YPO0602 YPO0602 YPO0602 660010 660441 + hypothetical protein No significant database hits gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0602 YPO0602a YPO0602a YPO0602a 660474 661229 + hemagglutinin gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0602a YPO0602b YPO0602b YPO0602b 661293 661457 + hypothetical protein gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0602b YPO0606 YPO0606 yapF yapF 661725 664010 - autotransporter protein gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0606 YPO0607 YPO0607 YPO0607 664070 665065 - hypothetical protein gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0607 YPO0608 YPO0608 YPO0608 665167 666546 - hypothetical protein gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0608 YPO0609 YPO0609 YPO0609 666869 667987 + transporter ATP-binding protein gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0609 YPO0610 YPO0610 YPO0610 668070 671423 + hypothetical protein gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0610 YPO0611 YPO0611 YPO0611 671532 672518 + LacI family regulatory protein gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0611 YPO0612 YPO0612 YPO0612 672595 673839 + sugar binding protein gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0612 YPO0613 YPO0613 YPO0613 673893 674774 + permease gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0613 YPO0614 YPO0614 YPO0614 674774 675592 + permease gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0614 YPO0615 YPO0615 YPO0615 675622 676104 + hypothetical protein gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0615 YPO0616 YPO0616 YPO0616 676155 678338 + glycosyl hydrolase gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0616 YPO0617 YPO0617 YPO0617 678402 679928 - hypothetical protein gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0617 YPO0618 YPO0618 YPO0618 679933 681702 - hypothetical protein gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0618 YPO0619 YPO0619 YPO0619 681818 682867 - multidrug resistance protein MdtN with MdtO and MdtP is involved in resistance to puromycin%2C acriflavine and tetraphenylarsonium chloride gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0619 YPO0620 YPO0620 YPO0620 682877 683203 - hypothetical protein gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0620 YPO0621 YPO0621 YPO0621 683209 683409 - hypothetical protein No significant database hits gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0621 YPO0622 YPO0622 YPO0622 683582 683689 - hypothetical protein No significant database hits gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0622 YPO0623 YPO0623 YPO0623 684175 685407 + aminotransferase gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0623 YPO0624 YPO0624 YPO0624 685400 686851 + hypothetical protein gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0624 YPO0625 YPO0625 YPO0625 686855 687301 + hypothetical protein gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0625 YPO0626 YPO0626 YPO0626 687471 688061 + hypothetical protein gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0626 YPO0627 YPO0627 YPO0627 688077 688457 + translational inhibitor protein gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0627 YPO0628 YPO0628 YPO0628 688742 689146 + translational inhibitor protein gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0628 YPO0629 YPO0629 YPO0629 689361 689663 - hypothetical protein gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0629 YPO0630 YPO0630 YPO0630 689923 690639 - hypothetical protein gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0630 YPO0631 YPO0631 YPO0631 690801 691733 + LysR family transcriptional regulator gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0631 YPO0632 YPO0632 YPO0632 692184 692692 + gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0632 YPO0634 YPO0634 YPO0634 692692 692850 - hypothetical protein doubtful CDS with no significant database hits gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0634 YPO0636 YPO0636 YPO0636 693382 693636 + hypothetical protein doubtful CDS with no significant database hits gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0636 YPO0637 YPO0637 y1093 y1093 693801 694823 + transposase for insertion sequence IS100 gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0637 YPO0638 YPO0638 YPO0638 694820 695602 + transposase/IS protein ypmt1.57c gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0638 YPO0640 YPO0640 YPO0640 697119 697589 + hypothetical protein no significant database hits gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0640 YPO0641 YPO0641 YPO0641 697667 698071 + hypothetical protein no significant database hits gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0641 YPO0641a YPO0641a YPO0641a 698088 698694 + gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0641a YPO0642 YPO0642 YPO0642 698575 698694 + hypothetical protein no significant database hits gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0642 YPO0643 YPO0643 rpoD rpoD 699212 701050 - RNA polymerase sigma factor RpoD sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this is the primary sigma factor of bacteria gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0643 YPO0644 YPO0644 dnaG dnaG 701208 702956 - DNA primase synthesizes RNA primers at the replication forks gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0644 YPO0645 YPO0645 rpsU rpsU 703092 703307 - 30S ribosomal protein S21 a small basic protein that is one of the last in the subunit assembly%3B omission does not prevent assembly but the subunit is inactive%3B binds central domain of 16S rRNA gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0645 YPO0646 YPO0646 gcp gcp 703713 704726 + DNA-binding/iron metalloprotein/AP endonuclease in most organisms%2C only the N-terminal domain is present in a single polypeptide%3B in some archaea this domain is fused to a kinase domain%3B this gene is essential for growth in Escherichia coli and Bacillus subtilis%3B the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins%3B the Pyrococcus structure shows DNA-binding properties%2C iron-binding%2C ATP-binding%2C and AP endonuclease activity gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0646 YPO0647 YPO0647 YPO0647 704972 705622 - glycerol-3-phosphate acyltransferase PlsY involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsX gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0647 YPO0648 YPO0648 folB folB 705730 706089 + bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase catalyzes the conversion of 7%2C8-dihydroneopterin to 6-hydroxymethyl-7%2C8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0648 YPO0649 YPO0649 uppP uppP 706363 707181 + undecaprenyl pyrophosphate phosphatase BacA%3B phosphatase activity in Escherichia coli not kinase%3B involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0649 YPO0650 YPO0650 cca cca 707417 708655 - multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template%3B phosphohydrolase activities include hydrolysis of pyrophosphate%2C 5'-nucleoside tri- and diphosphates%2C NADP%2C and 2'-AMP with the production of Pi%2C metal-dependent phosphodiesterase activity for 2'%2C3'-cAMP%2C 2'%2C3'-cGMP%2C and 2'%2C3'-cCMP%2C and hydrolysis 2'%2C3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides%3B these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0650 YPO0651 YPO0651 YPO0651 708815 709438 - signal transduction protein gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0651 YPO0652 YPO0652 YPO0652 709742 711049 + hypothetical protein gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0652 YPO0653 YPO0653 glnE glnE 711220 714075 + bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase%3B also catalyzes the reverse reaction - deadenylation%3B adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0653 YPO0654 YPO0654 rfaE rfaE 714210 715640 + bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D%2CD-heptose-1%2C7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D%2CD-heptose gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0654 YPO0655 YPO0655 asoB asoB 715677 716927 + hypothetical protein uncharacterized member of the APC superfamily of amino acid transporters%3B unknown function gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0655 YPO0656 YPO0656 YPO0656 717252 717533 - hypothetical protein gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0656 YPO0658 YPO0658 ribB ribB 718102 718755 + 3%2C4-dihydroxy-2-butanone 4-phosphate synthase DHBP synthase%3B functions during riboflavin biosynthesis gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0658 YPO0658a YPO0658a YPO0658a 717671 717860 + FMN-riboswitch ncRNA gene631 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0658a YPO0659 YPO0659 YPO0659 719214 719996 + hypothetical protein seems to be involved in biofilm formation%3B in asymptomatic bacteriuria E. coli strains 83972 and VR50%2C the ygiD gene is upregulated during biofilm formation in urine gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0659 YPO0660 YPO0660 YPO0660 720403 721563 - hypothetical protein gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0660 YPO0661 YPO0661 YPO0661 721573 722259 - hypothetical protein gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0661 YPO0662 YPO0662 YPO0662 722325 722495 + hypothetical protein doubtful CDS with no significant database matches gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0662 YPO0663 YPO0663 tolC tolC 722560 723957 - outer membrane channel protein trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules%3B functions with a number of efflux systems in the inner membrane to transport molecules out of the cell gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0663 YPO0664 YPO0664 nudF nudF 724353 724985 + ADP-ribose pyrophosphatase ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0664 YPO0665 YPO0665 YPO0665 725019 725444 + hypothetical protein gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0665 YPO0666 YPO0666 icc icc 725526 726353 + cyclic 3'%2C5'-adenosine monophosphate phosphodiesterase gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0666 YPO0667 YPO0667 YPO0667 726350 726934 + esterase Displays esterase activity toward palmitoyl-CoA and pNP-butyrate gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0667 YPO0668 YPO0668 parE parE 727036 728931 + DNA topoisomerase IV subunit B decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0668 YPO0669 YPO0669 crgA crgA 728935 729846 + LysR family transcriptional regulator gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0669 YPO0670 YPO0670 mda66 mda66 729904 730488 - modulator of drug activity gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0670 YPO0671 YPO0671 parC parC 730792 733065 + DNA topoisomerase IV subunit A decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0671 YPO0672 YPO0672 parF parF 733354 734085 + acyltransferase gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0672 YPO0673 YPO0673 sufI sufI 734264 735688 + repressor protein for FtsI gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0673 YPO0674 YPO0674 YPO0674 735996 738340 + gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0674 YPO0676 YPO0676 dkgA dkgA 738362 739195 - 2%2C5-diketo-D-gluconate reductase A methylglyoxal reductase/#-keto ester reductase%3B catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid%3B also catalyzes the reduction of methylglyoxal%2C ethyl-2-methylacetoacetate and ethyl-acetoacetate gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0676 YPO0677 YPO0677 YPO0677 739342 739551 + hypothetical protein no significant database hits gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0677 YPO0678 YPO0678 YPO0678 739614 740771 - iron-containing alcohol dehydrogenase gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0678 YPO0679 YPO0679 YPO0679 741169 742062 + AraC family transcriptional regulator gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0679 YPO0680 YPO0680 YPO0680 742154 742816 - DedA family membrane protein gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0680 YPO0681 YPO0681 metC metC 743009 744220 - cystathionine beta-lyase catalyzes the formation of L-homocysteine from cystathionine gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0681 YPO0682 YPO0682 YPO0682 744675 745736 + MotA/TolQ/ExbB proton channel family protein gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0682 YPO0683 YPO0683 YPO0683 745740 746171 + biopolymer transport protein ExbD membrane spanning protein in TonB-ExbB-ExbD complex%3B involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0683 YPO0684 YPO0684 YPO0684 746268 747824 - hypothetical protein gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0684 YPO0685 YPO0685 YPO0685 747849 748355 - hypothetical protein gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0685 YPO0686 YPO0686 YPO0686 748405 748875 - hypothetical protein gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0686 YPO0687 YPO0687 YPO0687 748875 749609 - hypothetical protein gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0687 YPO0688 YPO0688 YPO0688 749629 750462 - hypothetical protein gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0688 YPO0689 YPO0689 YPO0689 750459 751334 - hypothetical protein gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0689 YPO0690 YPO0690 YPO0690 751331 752617 - type II secretion protein gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0690 YPO0691 YPO0691 YPO0691 752629 753861 - hypothetical protein gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0691 YPO0692 YPO0692 YPO0692 754057 755372 - gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0692 YPO0694 YPO0694 YPO0694 755369 756235 - hypothetical protein gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0694 YPO0695 YPO0695 YPO0695 756287 756709 - hypothetical protein gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0695 YPO0696 YPO0696 tnp tnp 756909 757367 + transposase for the IS1541 insertion element gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0696 YPO0697 YPO0697 tnp tnp 757619 758077 + transposase for the IS1541 insertion element gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0697 YPO0698 YPO0698 YPO0698 758430 760910 + outer membrane usher protein gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0698 YPO0699 YPO0699 YPO0699 760928 761647 + fimbrial chaperone protein gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0699 YPO0700 YPO0700 YPO0700 761672 762778 + fimbrial protein gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0700 YPO0701 YPO0701 YPO0701 762990 764003 - iron-enterobactin transporter substrate-binding protein with FepCDG is involved in the transport of ferric enterobactin gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0701 YPO0702 YPO0702 YPO0702 764925 765920 + hypothetical protein gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0702 YPO0703 YPO0703 YPO0703 766012 766581 - lipoprotein gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0703 YPO0704 YPO0704 YPO0704 766796 768887 - gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0704 YPO0706 YPO0706 flhB flhB 768877 770010 - flagellar biosynthesis protein FlhB membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0706 YPO0707 YPO0707 fliR fliR 770010 770783 - flagellar assembly protein gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0707 YPO0708 YPO0708 fliQ fliQ 770790 771059 - flagellar assembly protein gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0708 YPO0709 YPO0709 fliP fliP 771064 771834 - flagellar biosynthesis protein FliP FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0709 YPO0710 YPO0710 fliN fliN 771831 772244 - flagellar switch protein gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0710 YPO0711 YPO0711 fliM fliM 772237 773148 - flagellar motor switch protein gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0711 YPO0712 YPO0712 flbD flbD 773659 774687 + Fis family transcriptional regulator gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0712 YPO0713 YPO0713 fliE fliE 774704 775084 + flagellar hook-basal body complex protein gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0713 YPO0714 YPO0714 fliF fliF 775094 776734 + flagellar MS-ring protein the MS-ring anchors the flagellum to the cytoplasmic membrane%3B part of the flagellar basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B the Vibrio parahaemolyticus protein is associated with the lateral flagella gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0714 YPO0715 YPO0715 fliG fliG 776706 777749 + flagellar motor switch protein G One of three proteins involved in switching the direction of the flagellar rotation gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0715 YPO0716 YPO0716 fliH fliH 777751 778470 + flagellar assembly protein H binds to and inhibits the function of flagella specific ATPase FliI gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0716 YPO0717 YPO0717 fliI fliI 778463 779803 + flagellum-specific ATP synthase involved in type III protein export during flagellum assembly gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0717 YPO0718 YPO0718 YPO0718 779816 780190 + hypothetical protein no significant database hits. Glutamine rich protein%2C 22 out of the 124 amino acids are glutamine residues (22%25 of the protein) gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0718 YPO0719 YPO0719 YPO0719 780518 780943 - hypothetical protein gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0719 YPO0720 YPO0720 YPO0720 780950 781216 - flagellar regulatory protein gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0720 YPO0721 YPO0721 flgA flgA 781445 782362 - flagellar basal body P-ring biosynthesis protein FlgA required for the assembly of the flagellar basal body P-ring%3B the Vibrio parahaemolyticus protein involved with the synthesis of the lateral flagella gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0721 YPO0722 YPO0722 flgB flgB 782351 782797 + flagellar basal-body rod protein FlgB with FlgF and C makes up the proximal portion of the flagellar basal body rod%3B Yersinia has 2 copies of flgB and other flagellar genes gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0722 YPO0723 YPO0723 flgC flgC 782800 783225 + flagellar basal body rod protein FlgC with FlgF and C makes up the proximal portion of the flagellar basal body rod%3B Vibrio parahaemolyticus protein is associated with the lateral flagella gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0723 YPO0724 YPO0724 flgD flgD 783228 783884 + flagellar basal body rod modification protein acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of some flagellar genes%3B Vibrio parahaemolyticus protein in this cluster is associated with lateral flagella production gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0724 YPO0725 YPO0725 flgE flgE 783939 785180 + flagellar hook protein FlgE the hook connects flagellar basal body to the flagellar filament%3B Vibrio parahaemolyticus protein is associated with the lateral flagella gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0725 YPO0726 YPO0726 tnp tnp 785404 785862 - transposase for the IS1541 insertion element gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0726 YPO0727 YPO0727 flgF flgF 785180 786619 + gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0727 YPO0728 YPO0728 flgG flgG 786690 787475 + flagellar basal body rod protein FlgG makes up the distal portion of the flagellar basal body rod gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0728 YPO0729 YPO0729 flgH flgH 787510 788175 + flagellar basal body L-ring protein part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B the Yersinia have 2 copies of flgH gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0729 YPO0730 YPO0730 flgI flgI 788252 789364 + flagellar basal body P-ring biosynthesis protein FlgA part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B Vibrio parahaemolyticus%2C Yersinia%2C Bradyrhizobium and other bacteria have two copies of this and other flagellar genes%3B the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0730 YPO0731 YPO0731 flgJ flgJ 789374 789667 + peptidoglycan hydrolase FlgJ%3B flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space%3B like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0731 YPO0732 YPO0732 flgK flgK 789780 791141 + flagellar hook-associated protein FlgK with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0732 YPO0733 YPO0733 flgL flgL 791170 792093 + flagellar hook-associated protein FlgL with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook%3B in Vibrio parahaemolyticus the protein in this cluster is associated with the lateral flagella gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0733 YPO0734 YPO0734 YPO0734 792138 793118 + hypothetical protein gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0734 YPO0735 YPO0735 YPO0735 793282 793728 - hypothetical protein gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0735 YPO0736 YPO0736 YPO0736 793709 794755 - regulatory protein gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0736 YPO0737 YPO0737 flaA1 flaA1 795381 796595 + flagellin gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0737 YPO0738 YPO0738 flaA2 flaA2 797110 798309 + flagellin gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0738 YPO0739 YPO0739 flaA3 flaA3 798592 799797 + flagellin gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0739 YPO0740 YPO0740 fliD fliD 800017 801294 + flagellar hook-associated protein gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0740 YPO0741 YPO0741 fliS fliS 801304 801684 + flagellar protein gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0741 YPO0742 YPO0742 YPO0742 801686 802012 + hypothetical protein gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0742 YPO0743 YPO0743 YPO0743 802014 803195 + flagellar hook-length control protein gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0743 YPO0744 YPO0744 YPO0744 803234 803704 + flagellar biogenesis protein gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0744 YPO0745 YPO0745 fliA fliA 803710 804405 + flagellar biosynthesis sigma factor sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor directs late flagellar biosynthesis genes gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0745 YPO0746 YPO0746 motA motA 804421 805287 + flagellar motor protein MotA With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0746 YPO0747 YPO0747 motB motB 805287 806198 + hypothetical protein gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0747 YPO0749 YPO0749 YPO0749 806658 807254 + hypothetical protein gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0749 YPO0750 YPO0750 YPO0750 807251 807706 + hypothetical protein gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0750 YPO0751 YPO0751 YPO0751 807690 808061 + hypothetical protein gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0751 YPO0752 YPO0752 pcp pcp 808224 808689 - gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0752 YPO0754 YPO0754 YPO0754 808939 809241 - hypothetical protein gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0754 YPO0755 YPO0755 YPO0755 809842 810357 + insertion element DNA-binding protein gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0755 YPO0756 YPO0756 YPO0756 810411 811196 + transposase for insertion sequence IS1661 gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0756 YPO0757 YPO0757 YPO0757 811086 812249 - hypothetical protein gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0757 YPO0758 YPO0758 YPO0758 812567 813562 + LacI family regulatory protein gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0758 YPO0759 YPO0759 YPO0759 813844 815214 + sodium:sulfate symporter family protein gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0759 YPO0760 YPO0760 YPO0760 815394 815807 - hypothetical protein gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0760 YPO0761 YPO0761 YPO0761 816351 816593 - hypothetical protein no significant database hits gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0761 YPO0762 YPO0762 YPO0762 816868 821184 - hypothetical protein gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0762 YPO0763 YPO0763 YPO0763 821198 822517 - hypothetical protein gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0763 YPO0764 YPO0764 YPO0764 822543 824768 - hypothetical protein gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0764 YPO0765 YPO0765 YPO0765 825357 829117 - gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0765 YPO0767 YPO0767 gntP gntP 830118 831461 - fructuronate transporter gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0767 YPO0768 YPO0768 YPO0768 833001 833399 + hypothetical protein no significant database hits gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0768 YPO0769 YPO0769 YPO0769 833835 834710 + hypothetical protein gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0769 YPO0770 YPO0770 YPO0770 835033 836790 - ABC transporter transmembrane protein gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0770 YPO0771 YPO0771 YPO0771 836783 838555 - ABC transporter transmembrane protein gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0771 YPO0772 YPO0772 YPO0772 838555 839859 - hypothetical protein gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0772 YPO0773 YPO0773 YPO0773 839849 840613 - thioesterase gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0773 YPO0774 YPO0774 YPO0774 840606 841733 - hypothetical protein gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0774 YPO0775 YPO0775 YPO0775 841730 842806 - hypothetical protein gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0775 YPO0776 YPO0776 YPO0776 842803 848622 - siderophore biosysnthesis protein gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0776 YPO0777 YPO0777 YPO0777 848635 850287 - siderophore biosysnthesis protein gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0777 YPO0778 YPO0778 YPO0778 850331 856936 - siderophore biosysnthesis protein gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0778 YPO0779 YPO0779 YPO0779 856997 857779 - transposase/IS protein ypmt1.57c gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0779 YPO0780 YPO0780 y1093 y1093 857776 858798 - transposase for insertion sequence IS100 gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0780 YPO0781 YPO0781 YPO0781 858883 859233 - gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0781 YPO0783 YPO0783 thyA thyA 859517 860311 - thymidylate synthase ThyA%3B catalyzes formation of dTMP and 7%2C8-dihydrofolate from 5%2C10-methylenetetrahydrofolate and dUMP%3B involved in deoxyribonucleotide biosynthesis%3B there are 2 copies in some Bacilli%2C one of which appears to be phage-derived gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0783 YPO0784 YPO0784 lgt lgt 860318 861190 - prolipoprotein diacylglyceryl transferase transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0784 YPO0785 YPO0785 ptsP ptsP 861441 863687 - fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein member of a second PTS chain involved in nitrogen metabolism%3B PtsP phosphorylates NPr gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0785 YPO0786 YPO0786 YPO0786 863700 864227 - dinucleoside polyphosphate hydrolase hydrolyzes diadenosine polyphosphate gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0786 YPO0789 YPO0789 mutH mutH 864925 865611 + DNA mismatch repair protein MutH%3B Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0789 YPO0790 YPO0790 tas tas 865946 866986 + aldo/keto reductase complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain%3B member of the aldo/keto reductase 2 family%3B crystal structure of purified Escherichia coli protein shows bound NADPH gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0790 YPO0790a YPO0790a YPO0790a 867693 867926 + hypothetical protein gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0790a YPO0792 YPO0792 ygeD ygeD 867955 869175 - lysophospholipid transporter LplT gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0792 YPO0793 YPO0793 aas aas 869172 871328 - acyl-ACP synthetase Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1 gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0793 YPO0794 YPO0794 bisC bisC 871777 874038 - biotin sulfoxide reductas2 gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0794 YPO0795 YPO0795 galR galR 874348 875370 + DNA-binding transcriptional regulator GalR controls transcription of galETKM gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0795 YPO0796 YPO0796 lysA lysA 875367 876629 - diaminopimelate decarboxylase catalyzes the decarboxylation of diaminopimelate into lysine%3B pyridoxal phosphate(PLP)-binding gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0796 YPO0797 YPO0797 lysR lysR 876844 877785 + LysR family transcriptional regulator activates the transcription of the lysA gene encoding diaminopimelate decarboxylase gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0797 YPO0798 YPO0798 YPO0798 877782 878942 - sugar transport protein gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0798 YPO0799 YPO0799 YPO0799 879311 880219 - LysR family transcriptional regulator gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0799 YPO0800 YPO0800 YPO0800 880326 881213 + hypothetical protein gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0800 YPO0801 YPO0801 YPO0801 881326 881961 + hypothetical protein gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0801 YPO0802 YPO0802 cheD cheD 881947 883590 - methyl-accepting chemotaxis protein gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0802 YPO0803 YPO0803 YPO0803 883793 884194 - hypothetical protein no significant database hits gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0803 YPO0804 YPO0804 YPO0804 884191 884907 - regulatory membrane protein gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0804 YPO0805 YPO0805 YPO0805 885191 885496 + lipoprotein gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0805 YPO0806 YPO0806 YPO0806 885548 886390 - prepilin peptidase gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0806 YPO0808 YPO0808 YPO0808 886874 888043 - general secretion pathway protein L gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0808 YPO0809 YPO0809 YPO0809 888048 889004 - general secretion pathway protein K gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0809 YPO0810 YPO0810 YPO0810 889013 889609 - general secretion pathway protein J gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0810 YPO0811 YPO0811 YPO0811 889602 889946 - general secretion pathway protein I gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0811 YPO0812 YPO0812 YPO0812 889984 890526 - general secretion pathway protein H gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0812 YPO0813 YPO0813 YPO0813 890531 890968 - general secretion pathway protein G gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0813 YPO0814 YPO0814 YPO0814 890988 892004 - type II secretion system protein gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0814 YPO0815 YPO0815 YPO0815 892176 893687 - general secretion pathway protein E gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0815 YPO0816 YPO0816 YPO0816 893684 895606 - general secretion pathway protein D gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0816 YPO0817 YPO0817 YPO0817 895687 896190 - general secretion pathway protein C gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0817 YPO0818 YPO0818 YPO0818 896258 896674 - hypothetical protein gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0818 YPO0819 YPO0819 YPO0819 897417 898172 - carbonic anhydrase gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0819 YPO0820 YPO0820 YPO0820 898548 898856 + hypothetical protein no significant database hits gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0820 YPO0822 YPO0822 YPO0822 899459 900409 + hypothetical protein gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0822 YPO0823 YPO0823 YPO0823 900524 902710 + hypothetical protein gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0823 YPO0824 YPO0824 YPO0824 902780 905893 + hypothetical protein gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0824 YPO0825 YPO0825 YPO0825 906238 907020 - transposase/IS protein ypmt1.57c gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0825 YPO0826 YPO0826 y1093 y1093 907017 908039 - transposase for insertion sequence IS100 gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0826 YPO0829 YPO0829 YPO0829 908982 910535 - sulfatase gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0829 YPO0831 YPO0831 YPO0831 911375 912151 + DeoR family regulatory protein gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0831 YPO0832 YPO0832 agaZ agaZ 912201 913499 + tagatose 6-phosphate kinase gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0832 YPO0833 YPO0833 YPO0833 913496 914662 + phosphosugar isomerase gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0833 YPO0834 YPO0834 manX manX 914680 915177 + PTS transport protein gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0834 YPO0835 YPO0835 YPO0835 915224 916012 + PTS permease gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0835 YPO0836 YPO0836 YPO0836 916002 916892 + PTS permease gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0836 YPO0837 YPO0837 YPO0837 916978 917418 + PTS permease gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0837 YPO0838 YPO0838 YPO0838 917421 918587 + acetylglucosamine-6-phosphate deacetylase gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0838 YPO0839 YPO0839 kduD2 kduD2 918783 919538 + 2-deoxy-D-gluconate 3-dehydrogenase catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0839 YPO0840 YPO0840 YPO0840 919554 920612 + hypothetical protein gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0840 YPO0841 YPO0841 YPO0841 920856 922082 + regulatory protein gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0841 YPO0842 YPO0842 YPO0842 922103 923710 + sulfatase gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0842 YPO0843 YPO0843 YPO0843 923833 925320 + hypothetical protein gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0843 YPO0844 YPO0844 gatY gatY 925429 926283 + tagatose-bisphosphate aldolase catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1%2C6-bisphosphate%3B in enteric bacteria there are two D-tagatose 1%2C6-bisphosphate-specific aldolases: KbaY (also called AgaY)%2C involved in catabolism of N-acetyl-galactosamine and D-galactosamine%2C and GatY which is part of the galactitol catabolism pathway gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0844 YPO0845 YPO0845 YPO0845 926307 926885 + ThiJ/PfpI family thiamine biogenesis protein gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0845 YPO0846 YPO0846 YPO0846 927126 928208 - LacI family regulatory protein gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0846 YPO0847 YPO0847 YPO0847 928602 929909 + sugar transporter gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0847 YPO0848 YPO0848 YPO0848 930057 932435 + glucosidase gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0848 YPO0849 YPO0849 lacI lacI 932764 933837 - lac repressor transcriptional repressor of lac operon%3B forms a homotetramer as a dimer of dimers%3B binds specific sites in lac operon resulting in DNA looping between the operators%3B binds allolactose as inducer gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0849 YPO0850 YPO0850 lamB lamB 934109 935368 + maltoporin porin involved in the transport of maltose and maltodextrins gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0850 YPO0850a YPO0850a YPO0850a 935741 936052 - PTS system glucose/sucrose specific transporter subunit IIB gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0850a YPO0852 YPO0852 bgaB bgaB 936164 938224 - beta-galactosidase gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0852 YPO0853 YPO0853 YPO0853 938275 939477 - galactosidase gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0853 YPO0854 YPO0854 YPO0854 939482 940333 - maltodextrin permease gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0854 YPO0855 YPO0855 YPO0855 940345 941652 - maltodextrin ABC transporter permease gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0855 YPO0856 YPO0856 YPO0856 941812 943074 - sugar-binding protein gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0856 YPO0857 YPO0857 YPO0857 943410 944510 + sugar transport ATP-binding protein gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0857 YPO0858 YPO0858 YPO0858 945059 946567 + sugar transport ATP-binding protein gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0858 YPO0859 YPO0859 YPO0859 946633 947643 + sugar transport system permease gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0859 YPO0860 YPO0860 YPO0860 948078 949079 + sugar-binding protein gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0860 YPO0862 YPO0862 YPO0862 949858 950376 + hypothetical protein No significant database matches to the full length CDS gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0862 YPO0863 YPO0863 YPO0863 950752 951609 + hypothetical protein gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0863 YPO0864 YPO0864 YPO0864 952033 952713 + hypothetical protein gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0864 YPO0865 YPO0865 YPO0865 952713 953033 + hypothetical protein no significant database hits gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0865 YPO0866 YPO0866 YPO0866 953116 953421 - hypothetical protein gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0866 YPO0867 YPO0867 YPO0867 953638 954417 - hypothetical protein gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0867 YPO0869 YPO0869 YPO0869 955022 955738 - hypothetical protein gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0869 YPO0870 YPO0870 YPO0870 955759 958083 - hypothetical protein gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0870 YPO0871 YPO0871 YPO0871 958328 958612 - colicin immunity protein gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0871 YPO0872 YPO0872 YPO0872 958659 958916 - hypothetical protein gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0872 YPO0873 YPO0873 YPO0873 959426 960964 - hypothetical protein gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0873 YPO0874 YPO0874 YPO0874 961468 962610 - hypothetical protein gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0874 YPO0875 YPO0875 YPO0875 962879 963244 + hypothetical protein gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0875 YPO0876 YPO0876 YPO0876 963257 963831 + gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0876 YPO0878 YPO0878 YPO0878 964013 964213 + regulatory protein gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0878 YPO0879 YPO0879 YPO0879 964372 964698 - hypothetical protein gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0879 YPO0880 YPO0880 YPO0880 964998 967289 + primase gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0880 YPO0881 YPO0881 YPO0881 967689 968087 - hypothetical protein gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0881 YPO0882 YPO0882 YPO0882 968087 968383 - hypothetical protein gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0882 YPO0883 YPO0883 YPO0883 968547 968909 - DNA binding protein gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0883 YPO0884 YPO0884 YPO0884 968972 969232 - hypothetical protein gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0884 YPO0887 YPO0887 int int 970097 971311 - integrase gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0887 YPO0888 YPO0888 lysS lysS 971744 973261 - lysyl-tRNA synthetase class II%3B LysRS2%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri%2C LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0888 YPO0889 YPO0889 prfB prfB 973271 974369 - peptide chain release factor 2 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2%3B in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism%3B this protein is similar to release factor 1 gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0889 YPO0890 YPO0890 recJ recJ 974548 976281 - ssDNA exonuclease RecJ 5'-3' single-stranded-DNA-specific exonuclease gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0890 YPO0891 YPO0891 dsbC dsbC 976288 977004 - thiol:disulfide interchange protein DsbC DsbC%3B periplasmic protein with protein disulfide isomerase activity%3B this protein also shows disulfide oxidoreductase activity gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0891 YPO0892 YPO0892 xerD xerD 977035 977934 - site-specific tyrosine recombinase XerD site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B XerD specifically exchanges the bottom strands%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0892 YPO0893 YPO0893 fldB fldB 978041 978559 + flavodoxin FldB An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0893 YPO0894 YPO0894 creD creD 978649 980127 - hypothetical protein gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0894 YPO0895 YPO0895 creC creC 980227 981645 - sensory histidine kinase CreC part of a two-component regulatory system with CreB or PhoB%3B involved in catabolic regulation gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0895 YPO0896 YPO0896 creB creB 981670 982371 - DNA-binding response regulator CreB response regulator in two-component regulatory system with CreC%3B CreB protein is phosphorylated by sensor protein phospho-CreC%3B involved in catabolic regulation gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0896 YPO0896a YPO0896a YPO0896a 982368 982793 - hypothetical protein gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0896a YPO0897 YPO0897 YPO0897 982774 983040 - hypothetical protein gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0897 YPO0898 YPO0898 YPO0898 983357 984349 + global regulator physiological role is not clear%3B not essential for growth but mutants grow poorly%3B mutations suppress hda null mutations%3B may be involved in regulation of ATP-DnaA levels%3B may also be involved in regulation of tRNA modifications%3B can bind folic acid and tetrahydrofolate%3B forms a three domain ring-like structure with a central channel%3B structurally similar to DMGO protein from A. globiformis%3B shows sequence similarity to yeast CAF17 transcriptional regulator gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0898 YPO0899 YPO0899 YPO0899 984422 984919 - hypothetical protein gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0899 YPO0900 YPO0900 YPO0900 985177 985878 - hemolysin III gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0900 YPO0901 YPO0901 YPO0901 986080 987225 - hypothetical protein No significant database matches. Similar to YPO1686 (61.0%25 identity in 354 aa overlap). gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0901 YPO0901a YPO0901a YPO0901a 987287 989412 - gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0901a YPO0904 YPO0904 YPO0904 990473 990910 - hypothetical protein no significant database hits gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0904 YPO0905 YPO0905 gcvP gcvP 991288 994167 - glycine dehydrogenase acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0905 YPO0906 YPO0906 gcsH gcsH 994379 994765 - glycine cleavage system protein H part of multienzyme complex composed of H%2C L%2C P%2C and T proteins which catalyzes oxidation of glycine to yield carbon dioxide%2C ammonia%2C 5%2C10-CH2-H4folate and a reduced pyridine nucleotide%3B protein H is involved in transfer of methylamine group from the P to T protein%3B covalently bound to a lipoyl cofactor gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0906 YPO0907 YPO0907 gcvT gcvT 994834 995931 - glycine cleavage system aminomethyltransferase T catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate%2C causing the release of ammonia and the generation of reduced GcvH protein gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0907 YPO0908 YPO0908 visC visC 996652 997872 - hypothetical protein gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0908 YPO0909 YPO0909 ubiH ubiH 998045 999223 - 2-octaprenyl-6-methoxyphenyl hydroxylase Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1%2C4-benzoquinone gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0909 YPO0910 YPO0910 pepP pepP 999292 1000605 - proline aminopeptidase P II exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue%3B substrate can be as short as a dipeptide gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0910 YPO0911 YPO0911 YPO0911 1000693 1001271 - hypothetical protein the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers%3B function unknown gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0911 YPO0912 YPO0912 YPO0912 1001608 1001937 + Z-ring-associated protein gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0912 YPO0913 YPO0913 YPO0913 1002301 1002897 + 5-formyltetrahydrofolate cyclo-ligase gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0913 YPO0914 YPO0914 serA serA 1003162 1004403 - D-3-phosphoglycerate dehydrogenase catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis%3B can also reduce alpha ketoglutarate to form 2-hydroxyglutarate gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0914 YPO0915 YPO0915 rpiA rpiA 1004710 1005366 - ribose-5-phosphate isomerase A Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0915 YPO0916 YPO0916 iciA iciA 1005708 1006616 + chromosome replication initiation inhibitor protein specific inhibitor of chromosomal initiation of replication in vitro%3B binds the three 13-mers in the origin (oriC) to block initiation of replication%3B also controls genes involved in arginine transport gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0916 YPO0917 YPO0917 yggE yggE 1006627 1007406 - hypothetical protein gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0917 YPO0918 YPO0918 yggA yggA 1007596 1008213 - arginine exporter protein Involved in the export of arginine gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0918 YPO0919 YPO0919 YPO0919 1008476 1009345 - hypothetical protein gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0919 YPO0920 YPO0920 fbaA fbaA 1009783 1010862 - fructose-bisphosphate aldolase catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1%2C6%2C bisphosphate gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0920 YPO0921 YPO0921 pgk pgk 1010982 1012145 - phosphoglycerate kinase Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0921 YPO0922 YPO0922 epd epd 1012248 1013264 - erythrose 4-phosphate dehydrogenase NAD-dependent%3B catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0922 YPO0923 YPO0923 YPO0923 1013579 1014361 - transposase/IS protein ypmt1.57c gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0923 YPO0924 YPO0924 y1093 y1093 1014358 1015380 - transposase for insertion sequence IS100 gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0924 YPO0925 YPO0925 tnp tnp 1015564 1016022 - transposase for the IS1541 insertion element gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0925 YPO0926 YPO0926 tktA tktA 1016330 1018324 - transketolase catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0926 YPO0927 YPO0927 YPO0927 1018815 1019567 + lipoprotein gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0927 YPO0928 YPO0928 YPO0928 1019857 1020177 - Rieske protein gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0928 YPO0929 YPO0929 speA speA 1020337 1022316 - arginine decarboxylase catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0929 YPO0931 YPO0931 metK metK 1023523 1024677 + S-adenosylmethionine synthetase catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0931 YPO0932 YPO0932 YPO0932 1024870 1025382 + hypothetical protein gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0932 YPO0933 YPO0933 endA endA 1025480 1026187 + endonuclease I gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0933 YPO0934 YPO0934 YPO0934 1026439 1027170 + 16S ribosomal RNA methyltransferase RsmE in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA%3B cells lacking this function can grow%2C but are outcompeted by wild-type%3B SAM-dependent m(3)U1498 methyltransferase gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0934 YPO0935 YPO0935 gshB gshB 1027196 1028155 + glutathione synthetase gsh-II gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0935 YPO0936 YPO0936 YPO0936 1028271 1028834 + hypothetical protein gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0936 YPO0937 YPO0937 YPO0937 1028834 1029256 + Holliday junction resolvase-like protein similar to RuvC resolvase with substantial differences%3B NMR structural information suggests this protein is monomeric%3B unknown cellular function gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0937 YPO0938 YPO0938 YPO0938 1029436 1030320 + carbon-nitrogen hydrolase gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0938 YPO0939 YPO0939 YPO0939 1030324 1031439 + agmatine deiminase catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0939 YPO0940 YPO0940 YPO0940 1031548 1032624 - hypothetical protein gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0940 YPO0941 YPO0941 YPO0941 1032692 1033390 + hypothetical protein gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0941 YPO0942 YPO0942 proC proC 1033523 1034344 + pyrroline-5-carboxylate reductase catalyzes the formation of L-proline from pyrroline-5-carboxylate gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0942 YPO0943 YPO0943 yggT yggT 1034632 1035186 + hypothetical protein gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0943 YPO0944 YPO0944 YPO0944 1035183 1035473 + hypothetical protein gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0944 YPO0945 YPO0945 YPO0945 1035573 1036166 + deoxyribonucleotide triphosphate pyrophosphatase HAM1-like protein%3B Rec-dependent growth%3B RgdB%3B yggV%3B it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0945 YPO0946 YPO0946 YPO0946 1036159 1037289 + coproporphyrinogen III oxidase catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0946 YPO0947 YPO0947 YPO0947 1037479 1046811 - virulence determinant gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0947 YPO0948 YPO0948 YPO0948 1047313 1048067 - gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0948 YPO0949 YPO0949 YPO0949 1048155 1049081 - glutaminase catalyzes the formation of glutamate from glutamine gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0949 YPO0950 YPO0950 YPO0950 1049192 1049518 - hypothetical protein gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0950 YPO0951 YPO0951 trmB trmB 1049518 1050237 - tRNA (guanine-N(7)-)-methyltransferase tRNA (guanine-N(7)-)-methyltransferase%3B catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0951 YPO0952 YPO0952 mutY mutY 1050575 1051690 + adenine DNA glycosylase gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0952 YPO0953 YPO0953 YPO0953 1051868 1052140 + hypothetical protein gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0953 YPO0954 YPO0954 mltC mltC 1052323 1053399 + murein transglycosylase C Murein hydrolase C%3B membrane-bound%3B lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0954 YPO0955 YPO0955 YPO0955 1053699 1054799 + hypothetical protein gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0955 YPO0956 YPO0956 YPO0956 1054837 1056936 + hydroxamate-type ferrisiderophore receptor gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0956 YPO0957 YPO0957 YPO0957 1057019 1058038 - sugar transport system permease gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0957 YPO0958 YPO0958 mglA mglA 1058035 1059534 - sugar transport ATP-binding protein gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0958 YPO0959 YPO0959 YPO0959 1059580 1060539 - sugar ABC transporter substrate-binding protein gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0959 YPO0960 YPO0960 speC speC 1061095 1063257 - ornithine decarboxylase gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0960 YPO0963 YPO0963 insB insB 1065829 1066185 - insertion sequence protein gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0963 YPO0964 YPO0964 insA insA 1066251 1066526 - insertion sequence protein gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0964 YPO0965 YPO0965 YPO0965 1066622 1067371 - hypothetical protein no significant database hits gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0965 YPO0966 YPO0966 YPO0966 1067376 1069673 - kinase gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0966 YPO0968 YPO0968 insA insA 1071245 1071520 - insertion sequence protein gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0968 YPO0968a YPO0968a YPO0968a 1071907 1072397 - gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0968a YPO0969 YPO0969 YPO0969 1072398 1074620 - hypothetical protein no significant database hits gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0969 YPO0970 YPO0970 YPO0970 1074635 1076983 - hypothetical protein gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0970 YPO0971 YPO0971 clpB3 clpB3 1076980 1079628 - Clp ATPase gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0971 YPO0973 YPO0973 YPO0973 1080046 1080537 - hypothetical protein gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0973 YPO0974 YPO0974 YPO0974 1080541 1082277 - OmpA family membrane protein gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0974 YPO0975 YPO0975 YPO0975 1082277 1082963 - hypothetical protein gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0975 YPO0976 YPO0976 YPO0976 1082960 1084312 - hypothetical protein gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0976 YPO0977 YPO0977 YPO0977 1084324 1085868 - hypothetical protein gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0977 YPO0978 YPO0978 YPO0978 1085911 1086411 - hypothetical protein gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0978 YPO0978a YPO0978a YPO0978a 1087811 1088182 - hypothetical protein gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0978a YPO0981 YPO0981 insA insA 1088356 1088619 - insertion element protein gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0981 YPO0982 YPO0982 YPO0982 1088687 1089082 - lipoprotein gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0982 YPO0983 YPO0983 YPO0983 1089533 1090183 - hypothetical protein gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0983 YPO0984 YPO0984 yspI yspI 1091363 1092013 + N-acylhomoserine lactone synthase gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0984 YPO0985 YPO0985 yspR yspR 1091994 1092737 - quorum-sensing transcriptional regulator gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0985 YPO0986 YPO0986 YPO0986 1093299 1094675 + hypothetical protein gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0986 YPO0987 YPO0987 YPO0987 1095052 1095885 + hypothetical protein gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0987 YPO0988 YPO0988 YPO0988 1096175 1097398 - hypothetical protein gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0988 YPO0989 YPO0989 iucA iucA 1097538 1099306 + gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0989 YPO0991 YPO0991 iucB iucB 1099293 1100243 + siderophore biosynthesis protein IucB gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0991 YPO0992 YPO0992 iucC iucC 1100240 1101988 + siderophore biosynthesis protein IucC gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0992 YPO0993 YPO0993 iucD iucD 1101985 1103313 + siderophore biosynthesis protein IucD gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0993 YPO0994 YPO0994 iutA iutA 1103385 1105565 + ferric siderophore receptor gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0994 YPO0995 YPO0995 YPO0995 1105824 1107257 - sodium:galactoside symporter family protein gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0995 YPO0996 YPO0996 YPO0996 1107355 1108035 + insertion element IS1661 DNA-binding protein gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0996 YPO0997 YPO0997 YPO0997 1108089 1108874 + transposase for insertion sequence IS1661 gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0997 YPO0998 YPO0998 YPO0998 1109070 1111436 - hypothetical protein gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0998 YPO0999 YPO0999 YPO0999 1111440 1111637 - hypothetical protein gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0999 YPO1000 YPO1000 YPO1000 1112076 1113353 + drug efflux protein gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1000 YPO1001 YPO1001 YPO1001 1113366 1116485 + integral membrane efflux protein gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1001 YPO1002 YPO1002 YPO1002 1116620 1118110 - enterotoxin-like protein gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1002 YPO1003 YPO1003 YPO1003 1118388 1118975 + hypothetical protein gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1003 YPO1004 YPO1004 yapH yapH 1119829 1130946 + autotransporter protein gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1004 YPO1005 YPO1005 YPO1005 1131049 1132929 - hypothetical protein gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1005 YPO1006 YPO1006 YPO1006 1133492 1134367 - hypothetical protein gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1006 YPO1007 YPO1007 YPO1007 1134575 1136392 - hypothetical protein gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1007 YPO1008 YPO1008 YPO1008 1137111 1138667 + integral membrane efflux protein gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1008 YPO1009 YPO1009 YPO1009 1138745 1139977 + peptidase T catalyzes the release of the N-terminal amino acid from a tripeptide gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1009 YPO1011 YPO1011 YPO1011 1140365 1142437 + TonB-dependent outer membrane receptor gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1011 YPO1012 YPO1012 YPO1012 1142588 1146001 + nonribosomal peptide synthetase/polyketide synthase gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1012 YPO1013 YPO1013 y1093 y1093 1146015 1147037 + transposase for insertion sequence IS100 gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1013 YPO1014 YPO1014 YPO1014 1147034 1147816 + transposase/IS protein ypmt1.57c gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1014 YPO1015 YPO1015 YPO1015 1148051 1148659 + hypothetical protein gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1015 YPO1016 YPO1016 YPO1016 1148656 1149126 + hypothetical protein gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1016 YPO1017 YPO1017 YPO1017 1149114 1149524 + prepilin peptidase dependent protein gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1017 YPO1018 YPO1018 recC recC 1149659 1153030 + exonuclease V subunit gamma catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides%3B component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1018 YPO1019 YPO1019 ptr ptr 1153112 1156000 + protease III gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1019 YPO1020 YPO1020 recB recB 1155997 1159659 + exonuclease V subunit beta helicase/nuclease%3B with RecCD catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1020 YPO1021 YPO1021 recD recD 1159656 1161614 + exonuclease V subunit alpha helicase/nuclease%3B with RecBC catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1021 YPO1022 YPO1022 argA argA 1161769 1163094 - N-acetylglutamate synthase catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1022 YPO1023 YPO1023 YPO1023 1163330 1164580 + N-acetylmuramoyl-L-alanine amidase gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1023 YPO1025 YPO1025 mltA mltA 1165302 1166474 + murein transglycosylase A membrane-bound%2C lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1025 YPO1026 YPO1026 YPO1026 1166617 1167444 + hypothetical protein gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1026 YPO1027 YPO1027 YPO1027 1167480 1167923 - hypothetical protein gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1027 YPO1028 YPO1028 YPO1028 1168058 1169377 - cysteine sulfinate desulfinase gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1028 YPO1029 YPO1029 gcvA gcvA 1169923 1170840 + DNA-binding transcriptional activator GcvA Glycine cleavage system transcriptional activator%3B activates the gcvTHP operon in the presence of glycine and represses the operon in its absence gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1029 YPO1030 YPO1030 YPO1030 1171006 1171401 + hypothetical protein gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1030 YPO1031 YPO1031 YPO1031 1171394 1172500 + RNA 2'-O-ribose methyltransferase gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1031 YPO1032 YPO1032 xni xni 1172751 1173506 - exonuclease IX has 3'-5' exonuclease activity that preferentially acts on ssDNA%3B also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites%3B can remove 3' phosphoglycolate groups gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1032 YPO1033 YPO1033 YPO1033 1173766 1175130 - hypothetical protein gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1033 YPO1034 YPO1034 queF queF 1175283 1176128 - 7-cyano-7-deazaguanine reductase catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1034 YPO1035 YPO1035 syd syd 1176266 1176811 + SecY interacting protein Syd SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1035 YPO1036 YPO1036 tnp tnp 1177501 1177959 + transposase for the IS1541 insertion element gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1036 YPO1037 YPO1037 YPO1037 1178213 1178545 + hypothetical protein gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1037 YPO1038 YPO1038 YPO1038 1178545 1179318 + tRNA pseudouridine synthase C catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1038 YPO1039 YPO1039 YPO1039 1179346 1179795 + flavodoxin An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1039 YPO1040 YPO1040 YPO1040 1179885 1180274 - hypothetical protein gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1040 YPO1041 YPO1041 dapD dapD 1180398 1181222 - 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-carboxylate N-succinyltransferase catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1041 YPO1042 YPO1042 glnD glnD 1181397 1184135 - PII uridylyl-transferase catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1042 YPO1043 YPO1043 ampM ampM 1184138 1184929 - methionine aminopeptidase catalyzes the removal of N-terminal amino acids from peptides and arylamides%3B generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn%2C Fe%2C or Mn gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1043 YPO1044 YPO1044 rpsB rpsB 1185364 1186089 + 30S ribosomal protein S2 one of the last subunits in the assembly of the 30S subunit%3B absence of S2 does not inhibit assembly but results in an inactive subunit gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1044 YPO1045 YPO1045 tsf tsf 1186217 1187074 + elongation factor Ts EF-Ts%3B functions during elongation stage of protein translation%3B forms a dimer%3B associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1045 YPO1046 YPO1046 pyrH pyrH 1187283 1188008 + uridylate kinase Catalyzes the phosphorylation of UMP to UDP gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1046 YPO1047 YPO1047 frr frr 1188144 1188701 + ribosome recycling factor Rrf%3B Frr%3B ribosome-recycling factor%3B release factor 4%3B RF4%3B recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G%3B A GTPase-dependent process results in release of 50S from 70S%3B inhibited by release factor RF-1%3B essential for viability%3B structurally similar to tRNAs gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1047 YPO1048 YPO1048 dxr dxr 1188915 1190111 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1048 YPO1049 YPO1049 rth rth 1190335 1191093 + undecaprenyl pyrophosphate synthase catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1049 YPO1050 YPO1050 cdsA cdsA 1191103 1191951 + CDP-diglyceride synthase catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1050 YPO1051 YPO1051 YPO1051 1191980 1193335 + zinc metallopeptidase RseP catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1051 YPO1052 YPO1052 YPO1052 1193372 1195759 + outer membrane protein assembly factor YaeT part of a complex with YfgL%2C YfiO%2C and NlpB involved in outer membrane protein biosynthesis%3B involved in the assembly of outer membrane proteins gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1052 YPO1053 YPO1053 ompH ompH 1195917 1196414 + periplasmic chaperone gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1053 YPO1054 YPO1054 lpxD lpxD 1196418 1197440 + UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1054 YPO1055 YPO1055 fabZ fabZ 1197598 1198143 + (3R)-hydroxymyristoyl-ACP dehydratase in Pseudomonas aeruginosa this enzyme is a trimer of dimers%3B essential for membrane formation%3B performs third step of type II fatty acid biosynthesis%3B catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1055 YPO1056 YPO1056 lpxA lpxA 1198147 1198935 + UDP-N-acetylglucosamine acyltransferase catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1056 YPO1057 YPO1057 lpxB lpxB 1198939 1200123 + lipid-A-disaccharide synthase catalyzes the formation of lipid A disaccharide from UDP-2%2C3-diacylglucosamine and 2%2C3-diacylglucosamine-1-phosphate%2C lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1057 YPO1058 YPO1058 rnhB rnhB 1200120 1200716 + ribonuclease HII RNH2%3B RNase HII%3B binds manganese%3B endonuclease which specifically degrades the RNA of RNA-DNA hybrids gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1058 YPO1059 YPO1059 dnaE dnaE 1200846 1204361 + DNA polymerase III subunit alpha catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time%3B main replicative polymerase gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1059 YPO1060 YPO1060 accA accA 1204374 1205333 + acetyl-CoA carboxylase carboxyltransferase subunit alpha catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits%3B one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1060 YPO1061 YPO1061 YPO1061 1205517 1205915 + hypothetical protein gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1061 YPO1062 YPO1062 tilS tilS 1205917 1207299 + tRNA(Ile)-lysidine synthetase Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU%3B ATP-dependent%3B responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1062 YPO1063 YPO1063 YPO1063 1207536 1207853 + cytochrome gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1063 YPO1064 YPO1064 YPO1064 1208118 1208378 - Rho-binding antiterminator Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1064 YPO1064a YPO1064a YPO1064a 1208365 1208565 - hypothetical protein gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1064a YPO1065 YPO1065 YPO1065 1208807 1209355 + hypothetical protein gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1065 YPO1066 YPO1066 YPO1066 1209358 1209774 + peptidyl-tRNA hydrolase domain-containing protein gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1066 YPO1067 YPO1067 cutF cutF 1209814 1210542 + lipoprotein involved with copper homeostasis and adhesion gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1067 YPO1068 YPO1068 proS proS 1210676 1212394 - prolyl-tRNA synthetase catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1068 YPO1069 YPO1069 YPO1069 1212498 1213205 - hypothetical protein gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1069 YPO1070 YPO1070 rcsF rcsF 1213202 1213609 - outer membrane lipoprotein gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1070 YPO1071 YPO1071 metQ metQ 1213727 1214542 - DL-methionine transporter substrate-binding subunit gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1071 YPO1072 YPO1072 YPO1072 1214606 1215259 - DL-methionine transporter permease part of the MetNIQ methionine uptake system gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1072 YPO1073 YPO1073 metN metN 1215252 1216283 - DL-methionine transporter ATP-binding protein part of the metNIQ transport system for methionine gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1073 YPO1074 YPO1074 YPO1074 1216470 1217036 + D%2CD-heptose 1%2C7-bisphosphate phosphatase Converts the D-glycero-beta-D-manno-heptose 1%2C7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1074 YPO1074a YPO1074a YPO1074a 1217287 1217472 - hypothetical protein gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1074a YPO1075 YPO1075 dkgB dkgB 1223177 1223980 + 2%2C5-diketo-D-gluconate reductase B catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1075 YPO1076 YPO1076 YPO1076 1224015 1224479 + hypothetical protein no significant database hits gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1076 YPO1077 YPO1077 YPO1077 1224840 1225622 + hypothetical protein gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1077 YPO1078 YPO1078 mltD mltD 1225664 1227091 - membrane-bound lytic murein transglycosylase D catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues%3B may play a role in recycling muropeptides during cell division and/or cell elongation%3B in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1078 YPO1079 YPO1079 gloB gloB 1227124 1227879 - hydroxyacylglutathione hydrolase gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1079 YPO1080 YPO1080 YPO1080 1227924 1228643 + hypothetical protein gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1080 YPO1081 YPO1081 rnhA rnhA 1228698 1229162 - ribonuclease H An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1081 YPO1082 YPO1082 dnaQ dnaQ 1229232 1229996 + DNA polymerase III subunit epsilon 3'-5' exonuclease of DNA polymerase III gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1082 YPO1083 YPO1083 YPO1083 1230242 1231726 - permease gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1083 YPO1084 YPO1084 YPO1084 1232065 1232283 + gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1084 YPO1085 YPO1085 YPO1085 1232349 1233131 - transposase/IS protein ypmt1.57c gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1085 YPO1086 YPO1086 y1093 y1093 1233128 1234150 - transposase for insertion sequence IS100 gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1086 YPO1088 YPO1088 YPO1088 1235071 1235391 + DNA-binding prophage protein gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1088 YPO1089 YPO1089 YPO1089 1235740 1236828 - regulatory prophage protein gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1089 YPO1090 YPO1090 YPO1090 1236825 1237784 - prophage DNA primase gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1090 YPO1091 YPO1091 YPO1091 1237777 1238319 - prophage protein gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1091 YPO1092 YPO1092 YPO1092 1238512 1239408 - DNA-binding prophage protein gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1092 YPO1096 YPO1096 YPO1096 1240596 1242266 - hypothetical protein gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1096 YPO1097 YPO1097 YPO1097 1242317 1243405 - hypothetical protein gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1097 YPO1098 YPO1098 YPO1098 1243484 1244683 - prophage integrase gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1098 YPO1099 YPO1099 tnp tnp 1244907 1245365 - transposase for the IS1541 insertion element gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1099 YPO1101 YPO1101 smpB smpB 1246000 1246482 - SsrA-binding protein binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes%3B also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site%3B SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus%3B both the tmRNA and SmpB are regulated in cell cycle-dependent manner%3B functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1101 YPO1102 YPO1102 YPO1102 1246643 1247077 + hypothetical protein gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1102 YPO1103 YPO1103 YPO1103 1247070 1247354 + hypothetical protein gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1103 YPO1104 YPO1104 YPO1104 1247504 1247854 - hypothetical protein gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1104 YPO1105 YPO1105 YPO1105 1247959 1249638 - recombination and repair protein gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1105 YPO1106 YPO1106 ppnK ppnK 1249707 1250588 - inorganic polyphosphate/ATP-NAD kinase catalyzes the phosphorylation of NAD to NADP gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1106 YPO1107 YPO1107 YPO1107 1250712 1251290 + heat shock protein GrpE with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins%3B may act as a thermosensor gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1107 YPO1108 YPO1108 gltA gltA 1251398 1252678 - type II citrate synthase type II enzyme%3B in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate%3B allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation%3B forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A%3B functions in TCA cycle%2C glyoxylate cycle and respiration%3B enzyme from Helicobacter pylori is not inhibited by NADH gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1108 YPO1109 YPO1109 sdhC sdhC 1253388 1253777 + succinate dehydrogenase cytochrome b556 large membrane subunit gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1109 YPO1110 YPO1110 sdhD sdhD 1253771 1254118 + succinate dehydrogenase cytochrome b556 small membrane subunit gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1110 YPO1111 YPO1111 sdhA sdhA 1254119 1255885 + succinate dehydrogenase flavoprotein subunit part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1111 YPO1112 YPO1112 sdhB sdhB 1255935 1256651 + succinate dehydrogenase iron-sulfur subunit part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol%3B the catalytic subunits are similar to fumarate reductase gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1112 YPO1113 YPO1113 sucA sucA 1257007 1259814 + 2-oxoglutarate dehydrogenase E1 SucA%3B E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate%3B SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1113 YPO1114 YPO1114 sucB sucB 1259844 1261067 + dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex%3B catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1114 YPO1115 YPO1115 sucC sucC 1261180 1262346 + succinyl-CoA synthetase subunit beta catalyzes the interconversion of succinyl-CoA and succinate gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1115 YPO1116 YPO1116 sucD sucD 1262346 1263218 + succinyl-CoA synthetase subunit alpha Catalyzes the only substrate-level phosphorylation in the TCA cycle gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1116 YPO1117 YPO1117 cydA cydA 1263985 1265553 + cytochrome D ubiquinol oxidase subunit I gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1117 YPO1118 YPO1118 cydB cydB 1265568 1266707 + cytochrome D ubiquinol oxidase subunit II gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1118 YPO1119 YPO1119 YPO1119 1266799 1267131 + hypothetical protein gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1119 YPO1120 YPO1120 YPO1120 1267263 1267664 + acyl-CoA thioester hydrolase catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters%3B physiological role remains unknown%3B involved in phospholipid metabolism%3B part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1120 YPO1121 YPO1121 tolQ tolQ 1267664 1268350 + colicin uptake protein TolQ membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1121 YPO1122 YPO1122 tolR tolR 1268363 1268791 + colicin uptake protein TolR membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1122 YPO1123 YPO1123 tolA tolA 1268903 1270069 + cell envelope integrity inner membrane protein TolA inner membrane component of 7 member Tol-Pal envelope-spanning complex%3B involved in maintaining cell envelope integrity%3B utilized by colicins and filamentous phages for import%3B interacts with TolB%2C Pal%2C and through TolB to various outer membrane porins gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1123 YPO1124 YPO1124 tolB tolB 1270189 1271481 + translocation protein TolB forms dimers%3B may be involved in cell envelope integrity%3B interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1124 YPO1125 YPO1125 pal pal 1271532 1272038 + peptidoglycan-associated outer membrane lipoprotein gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1125 YPO1126 YPO1126 YPO1126 1272048 1272857 + tol-pal system protein YbgF periplasmic protein that interacts with TolA%3B the tol-pal system is probably involved in maintaining cell envelope integrity gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1126 YPO1127 YPO1127 nadA nadA 1273693 1274754 + quinolinate synthetase 3 different subfamilies%3B catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1127 YPO1128 YPO1128 pnuC pnuC 1274876 1275601 + intergral membrane NMN transport protein PnuC gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1128 YPO1129 YPO1129 YPO1129 1275716 1276654 - zinc transporter ZitB involved in zinc efflux across the cytoplasmic membrane gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1129 YPO1129a YPO1129a YPO1129a 1277103 1278119 + phospho-2-dehydro-3-deoxyheptonate aldolase gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1129a YPO1131 YPO1131 YPO1131 1278129 1278911 - transposase/IS protein ypmt1.57c gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1131 YPO1132 YPO1132 y1093 y1093 1278908 1279930 - transposase for insertion sequence IS100 gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1132 YPO1133 YPO1133 gpmA gpmA 1280296 1281048 - phosphoglyceromutase 2%2C3-bisphosphoglycerate-dependent%3B catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1133 YPO1134 YPO1134 psiF psiF 1281395 1281730 - starvation-inducible protein gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1134 YPO1135 YPO1135 galM galM 1282023 1283092 - gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1135 YPO1137 YPO1137 galK galK 1283086 1284237 - galactokinase catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1137 YPO1138 YPO1138 galT galT 1284234 1285286 - galactose-1-phosphate uridylyltransferase catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1138 YPO1139 YPO1139 galE galE 1285296 1286312 - UDP-galactose-4-epimerase gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1139 YPO1140 YPO1140 YPO1140 1286672 1287490 - hypothetical protein gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1140 YPO1142 YPO1142 modF modF 1287707 1289197 - molybdenum transport ATP-binding protein ModF contains 2 ATP-binding cassettes%3B involved in the transport of molybdenum gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1142 YPO1143 YPO1143 modE modE 1289307 1290098 - DNA-binding transcriptional regulator ModE represses the modABCD operon and activates the moaABCD and napFDAGHBC operons gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1143 YPO1144 YPO1144 YPO1144 1290415 1290567 + hypothetical protein gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1144 YPO1145 YPO1145 modA modA 1290802 1291581 + molybdate transporter periplasmic protein with ModCB is involved in the high-affinity transport of molybdate gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1145 YPO1146 YPO1146 modB modB 1291581 1292276 + molybdate ABC transporter permease part of ModCBA molybdate transporter%3B member of ABC superfamily%3B inner membrane component%3B regulated by repressor protein ModE gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1146 YPO1147 YPO1147 modC modC 1292270 1293349 + molybdate transporter ATP-binding protein Part of the ABC transporter complex modABC involved in molybdenum import gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1147 YPO1148 YPO1148 YPO1148 1293405 1294226 - phosphotransferase YbhA%3B catalyzes the dephosphorylation of pyridoxal phosphate%2C fructose 1%2C6-bisphosphate%2C erythrose 4-phosphate and p-nitrophenyl phosphate%3B purine and pyrimidine nucleotides are secondary substrates%3B phosphotransferase activity observed when using monophosphates as phosphate donor%3B member of the haloacid dehalogenase-like hydrolases superfamily gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1148 YPO1149 YPO1149 YPO1149 1294517 1295521 + 6-phosphogluconolactonase catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1149 YPO1150 YPO1150 bioA bioA 1295706 1296974 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7%2C8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1150 YPO1151 YPO1151 bioB bioB 1297073 1298110 + biotin synthase gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1151 YPO1152 YPO1152 bioF bioF 1298110 1299261 + 8-amino-7-oxononanoate synthase catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1152 YPO1153 YPO1153 bioC bioC 1299245 1300048 + biotin synthesis protein BioC gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1153 YPO1154 YPO1154 bioD bioD 1300041 1300763 + dithiobiotin synthetase DTB synthetase%3B dethiobiotin synthase%3B involved in production of dethiobiotin from ATP and 7%2C8-diaminononanoate and carbon dioxide%3B contains magnesium gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1154 YPO1155 YPO1155 YPO1155 1300915 1301625 - amino acid transporter gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1155 YPO1156 YPO1156 uvrB uvrB 1302715 1304730 + excinuclease ABC subunit B The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands%2C where it probes for the presence of a lesion gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1156 YPO1157 YPO1157 YPO1157 1305022 1305267 + hypothetical protein gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1157 YPO1158 YPO1158 YPO1158 1305398 1306321 - hypothetical protein gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1158 YPO1159 YPO1159 moaA moaA 1306853 1307833 + molybdenum cofactor biosynthesis protein A together with moaC%2C is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1159 YPO1160 YPO1160 moaC moaC 1307934 1308413 + molybdenum cofactor biosynthesis protein MoaC MoaC%3B along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z%3B involved in molybdenum cofactor biosynthesis gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1160 YPO1161 YPO1161 moaD moaD 1308410 1308655 + molybdopterin synthase small subunit catalyzes the conversion of molybdopterin precursor Z into molybdopterin gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1161 YPO1162 YPO1162 moaE moaE 1308655 1309110 + molybdopterin guanine dinucleotide biosynthesis protein MoaE catalyzes the conversion of molybdopterin precursor Z into molybdopterin gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1162 YPO1163 YPO1163 YPO1163 1309253 1309963 + hypothetical protein gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1163 YPO1164 YPO1164 tnp tnp 1310198 1310656 + transposase for the IS1541 insertion element gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1164 YPO1165 YPO1165 betA betA 1310885 1312588 - choline dehydrogenase catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1165 YPO1166 YPO1166 betB betB 1312611 1314083 - betaine aldehyde dehydrogenase catalyzes the formation of betaine from betaine aldehyde gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1166 YPO1167 YPO1167 betI betI 1314141 1314737 - transcriptional regulator BetI HTH-type%3B bet1%3B Repressor involved in choline regulation of the bet genes gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1167 YPO1168 YPO1168 betT betT 1315102 1317123 + choline transport protein BetT proton-motive-force-driven choline transporter gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1168 YPO1169 YPO1169 YPO1169 1317355 1318248 + DNA-binding transcriptional activator XapR gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1169 YPO1170 YPO1170 YPO1170 1318286 1319167 - hypothetical protein gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1170 YPO1171 YPO1171 xapA xapA 1319480 1320343 + purine nucleoside phosphorylase catalyzes the formation of a purine and ribose phosphate from a purine nucleoside%3B in E. coli this enzyme functions in xanthosine degradation gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1171 YPO1172 YPO1172 YPO1172 1320482 1321282 + hypothetical protein gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1172 YPO1173 YPO1173 tnp tnp 1321272 1321730 + transposase for the IS1541 insertion element gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1173 YPO1174 YPO1174 YPO1174 1322145 1323074 + hypothetical protein no significant database hits gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1174 YPO1175 YPO1175 YPO1175 1323368 1324312 + tRNA-dihydrouridine synthase C gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1175 YPO1175a YPO1175a YPO1175a 1324386 1324565 - membrane protein gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1175a YPO1176 YPO1176 pbpG pbpG 1324904 1325839 + D-alanyl-D-alanine endopeptidase specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi%3B Penicillin-binding protein 7 gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1176 YPO1177 YPO1177 dld dld 1325960 1327675 - D-lactate dehydrogenase component of the membrane-bound D-lactate oxidase%2C FAD-binding%2C NADH independent gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1177 YPO1178 YPO1178 cyaB cyaB 1327882 1328421 + adenylate cyclase gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1178 YPO1179 YPO1179 YPO1179 1328447 1328788 - hypothetical protein gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1179 YPO1180 YPO1180 YPO1180 1329101 1330204 + hypothetical protein no significant database hits gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1180 YPO1181 YPO1181 YPO1181 1330389 1330637 + hypothetical protein gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1181 YPO1182 YPO1182 YPO1182 1330845 1331681 + ABC transporter ATP-binding protein gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1182 YPO1183 YPO1183 YPO1183 1331718 1332647 + substrate-binding periplasmic transport protein gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1183 YPO1184 YPO1184 YPO1184 1332810 1333610 + ABC transport membrane permease gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1184 YPO1185 YPO1185 YPO1185 1333607 1334494 + ABC transport membrane permease gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1185 YPO1186 YPO1186 YPO1186 1334740 1335213 + hypothetical protein gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1186 YPO1187 YPO1187 YPO1187 1335648 1336916 + substrate-binding periplasmic transport protein gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1187 YPO1188 YPO1188 YPO1188 1337040 1338641 + branched-chain amino acid transporter permease gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1188 YPO1189 YPO1189 YPO1189 1338641 1339717 + branched-chain amino acid transporter permease gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1189 YPO1190 YPO1190 YPO1190 1339714 1340550 + ABC transporter ATP-binding protein gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1190 YPO1191 YPO1191 YPO1191 1340644 1341342 + ABC transporter ATP-binding protein gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1191 YPO1192 YPO1192 YPO1192 1341457 1342314 + hypothetical protein gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1192 YPO1193 YPO1193 YPO1193 1342338 1343753 + pyridoxal-dependent decarboxylase gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1193 YPO1194 YPO1194 YPO1194 1343908 1344762 - sulfurtransferase gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1194 YPO1195 YPO1195 YPO1195 1345498 1346430 + gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1195 YPO1197 YPO1197 YPO1197 1346691 1347845 + ABC transporter integral membrane protein gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1197 YPO1198 YPO1198 YPO1198 1347842 1348780 + ABC transporter ATP-binding protein gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1198 YPO1199 YPO1199 YPO1199 1348777 1349613 + ABC transporter integral membrane protein gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1199 YPO1200 YPO1200 YPO1200 1350091 1351425 + arginine:agmatin antiporter gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1200 YPO1201 YPO1201 YPO1201 1351495 1353801 + amino acid decarboxylase gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1201 YPO1203 YPO1203 YPO1203 1354247 1355137 - hypothetical protein gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1203 YPO1203a YPO1203a YPO1203a 1353919 1354137 - hypothetical protein gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1203a YPO1205 YPO1205 ompC2 ompC2 1355549 1356664 - outer membrane protein OmpC gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1205 YPO1206 YPO1206 dinG dinG 1356934 1359114 + ATP-dependent DNA helicase DinG helicase involved in DNA repair and perhaps also replication gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1206 YPO1207 YPO1207 katA katA 1359182 1360624 - catalase gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1207 YPO1208 YPO1208 YPO1208 1360997 1361524 + hypothetical protein gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1208 YPO1209 YPO1209 tyrP tyrP 1361781 1362989 - tyrosine-specific transport protein gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1209 YPO1210 YPO1210 YPO1210 1363608 1364801 + competence damage-inducible protein A gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1210 YPO1211 YPO1211 eco eco 1364859 1365368 - ecotin serine protease inhibitor%2C inhibits trypsin and other proteases gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1211 YPO1212 YPO1212 YPO1212 1365403 1365660 - 2Fe-2S ferredoxin plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor%2C essential for nucleotide reduction catalyzed by ribonucleotide reductases gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1212 YPO1213 YPO1213 nrdB nrdB 1365664 1366794 - ribonucleotide-diphosphate reductase subunit beta B2 or R2 protein%3B type 1a enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdA gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1213 YPO1214 YPO1214 nrdA nrdA 1366957 1369245 - ribonucleotide-diphosphate reductase subunit alpha Catalyzes the rate-limiting step in dNTP synthesis gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1214 YPO1215 YPO1215 ubiG ubiG 1369739 1370467 - 3-demethylubiquinone-9 3-methyltransferase Involved in ubiquinone biosynthesis gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1215 YPO1216 YPO1216 gyrA gyrA 1370729 1373404 + DNA gyrase subunit A negatively supercoils closed circular double-stranded DNA gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1216 YPO1217 YPO1217 rcsC rcsC 1373592 1376465 + hybrid sensory kinase in two-component regulatory system with RcsB and YojN gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1217 YPO1218 YPO1218 rcsB rcsB 1376533 1377186 - transcriptional regulator RcsB two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division%3B probably phosphorylated by RcsC or RcsF gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1218 YPO1219 YPO1219 YPO1219 1377189 1379881 - gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1219 YPO1221 YPO1221 YPO1221 1379905 1381059 - hypothetical protein gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1221 YPO1222 YPO1222 ompC ompC 1382092 1383277 + porin allows for ions and hydrophilic solutes to cross the outer membrane gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1222 YPO1223 YPO1223 tnp tnp 1383479 1383937 + transposase for the IS1541 insertion element gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1223 YPO1224 YPO1224 ampH ampH 1384727 1385893 - beta-lactam binding protein AmpH this protein has no known enzymatic function gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1224 YPO1226 YPO1226 YPO1226 1386168 1387664 - transport protein gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1226 YPO1228 YPO1228 YPO1228 1388071 1389099 + hypothetical protein gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1228 YPO1229 YPO1229 cheD2 cheD2 1389173 1390960 - methyl-accepting chemotaxis protein gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1229 YPO1231 YPO1231 pla2 pla2 1391382 1392317 - outer membrane protease outer membrane protease%3B involved in virulence in many organisms%3B OmpT%3B IcsP%3B SopA%3B Pla%3B PgtE%3B omptin%3B in Escherichia coli OmpT can degrade antimicrobial peptides%3B in Yersinia Pla activates plasminogen during infection%3B in Shigella flexneria SopA cleaves the autotransporter IcsA gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1231 YPO1232 YPO1232 dinI dinI 1392489 1392731 - stress response protein gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1232 YPO1233 YPO1233 YPO1233 1392937 1393659 - prophage repressor protein gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1233 YPO1234 YPO1234 YPO1234 1393933 1394412 + phage antitermination protein Q gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1234 YPO1235 YPO1235 YPO1235 1394614 1395927 + hypothetical protein gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1235 YPO1236 YPO1236 YPO1236 1395924 1396535 + aldolase gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1236 YPO1237 YPO1237 YPO1237 1396615 1397430 + transcriptional regulator gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1237 YPO1238 YPO1238 YPO1238 1397448 1398200 + hypothetical protein gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1238 YPO1239 YPO1239 YPO1239 1398814 1399104 + bacteriophage protein gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1239 YPO1240 YPO1240 YPO1240 1399150 1399767 + ATP-binding protein no significant database hits gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1240 YPO1241 YPO1241 YPO1241 1399772 1399966 + bacteriophage protein gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1241 YPO1242 YPO1242 YPO1242 1399963 1401471 + bacteriophage tail sheath protein gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1242 YPO1243 YPO1243 YPO1243 1401493 1401861 + hypothetical protein no significant database hits gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1243 YPO1244 YPO1244 YPO1244 1401863 1402162 + hypothetical protein no significant database hits gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1244 YPO1245 YPO1245 YPO1245 1402283 1403776 + bacteriophage coat protein gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1245 YPO1246 YPO1246 YPO1246 1404043 1405449 + bacteriophage protein gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1246 YPO1247 YPO1247 YPO1247 1405446 1406501 + bacteriophage tail protein gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1247 YPO1248 YPO1248 YPO1248 1406517 1407113 + bacteriophage baseplate assembly protein gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1248 YPO1249 YPO1249 YPO1249 1407110 1407565 + bacteriophage protein GP46 gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1249 YPO1250 YPO1250 YPO1250 1407569 1408705 + bacteriophage protein gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1250 YPO1250a YPO1250a YPO1250a 1408702 1408962 + bacteriophage protein gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1250a YPO1251 YPO1251 YPO1251 1408959 1409306 + bacteriophage protein gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1251 YPO1252 YPO1252 stf stf 1409403 1410182 + bacteriophage tail fiber protein gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1252 YPO1253 YPO1253 YPO1253 1410480 1411220 + LacI family regulatory protein gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1253 YPO1254 YPO1254 bglA bglA 1411511 1412947 + 6-phospho-beta-glucosidase gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1254 YPO1255 YPO1255 YPO1255 1413073 1413435 - hypothetical protein No significant database hits gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1255 YPO1257 YPO1257 YPO1257 1414135 1414623 - hypothetical protein No significant database hits gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1257 YPO1258 YPO1258 YPO1258 1414636 1415316 - hypothetical protein gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1258 YPO1258a YPO1258a YPO1258a 1416141 1416524 - hypothetical protein gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1258a YPO1260 YPO1260 YPO1260 1416755 1418551 - hypothetical protein gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1260 YPO1261 YPO1261 YPO1261 1418579 1418806 - hypothetical protein gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1261 YPO1262 YPO1262 YPO1262 1418984 1419988 + nucleoid-associated protein NdpA gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1262 YPO1263 YPO1263 tnp tnp 1420189 1420647 + transposase for the IS1541 insertion element gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1263 YPO1264 YPO1264 rplY rplY 1420786 1421070 - 50S ribosomal protein L25 the Ctc family of proteins consists of two types%2C one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1264 YPO1265 YPO1265 YPO1265 1421232 1422989 - DEAD box helicase family protein gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1265 YPO1266 YPO1266 rsuA rsuA 1423503 1424210 + 16S rRNA pseudouridylate synthase A catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1266 YPO1267 YPO1267 bcr bcr 1424329 1425528 + bicyclomycin/multidrug efflux system Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1267 YPO1269 YPO1269 YPO1269 1426495 1426839 + hypothetical protein gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1269 YPO1270 YPO1270 YPO1270 1426900 1428492 - ABC transporter ATP-binding protein gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1270 YPO1271 YPO1271 YPO1271 1428494 1429522 - ABC transporter integral membrane protein gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1271 YPO1272 YPO1272 YPO1272 1429522 1430622 - ABC transporter integral membrane protein gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1272 YPO1273 YPO1273 YPO1273 1430632 1432440 - substrate-binding transport protein gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1273 YPO1274 YPO1274 YPO1274 1432522 1434103 - gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1274 YPO1275 YPO1275 spr spr 1434690 1435274 - outer membrane lipoprotein by similarity%2C Spr seems to have peptidase activity%3B involved in thermoresistance gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1275 YPO1276 YPO1276 YPO1276 1435716 1436417 - hypothetical protein gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1276 YPO1277 YPO1277 YPO1277 1436476 1437459 - cobalamin synthesis protein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1277 YPO1278 YPO1278 YPO1278 1437775 1438101 + hypothetical protein gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1278 YPO1279 YPO1279 YPO1279 1438210 1439010 + transcriptional regulator gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1279 YPO1280 YPO1280 YPO1280 1439154 1440626 - D-mannonate oxidoreductase gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1280 YPO1283 YPO1283 uxuA uxuA 1441211 1442404 + mannonate dehydratase catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1283 YPO1284 YPO1284 YPO1284 1442544 1443116 - elongation factor P Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro%2C suggesting its involvement in the formation of the first peptide bond of a protein gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1284 YPO1285 YPO1285 mtr mtr 1443220 1444464 - tryptophan-specific transport protein gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1285 YPO1286 YPO1286 YPO1286 1444839 1445093 + hypothetical protein gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1286 YPO1287 YPO1287 YPO1287 1445162 1445977 - short chain oxidoreductase gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1287 YPO1288 YPO1288 YPO1288 1445988 1446953 - D-isomer specific 2-hydroxyacid dehydrogenase family protein gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1288 YPO1289 YPO1289 YPO1289 1446950 1448092 - hypothetical protein gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1289 YPO1290 YPO1290 YPO1290 1448444 1449940 + aldehyde dehydrogenase gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1290 YPO1291 YPO1291 YPO1291 1449944 1451497 + carbohydrate kinase gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1291 YPO1292 YPO1292 rpiA rpiA 1451517 1452227 + ribose 5-phosphate isomerase gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1292 YPO1293 YPO1293 YPO1293 1452359 1453447 + periplasmic carbohydrate-binding transport protein gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1293 YPO1294 YPO1294 YPO1294 1453556 1455130 + ABC transporter ATP-binding protein gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1294 YPO1295 YPO1295 YPO1295 1455166 1456164 + ABC transporter integral membrane protein gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1295 YPO1296 YPO1296 YPO1296 1456277 1456798 - Mut family protein gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1296 YPO1298 YPO1298 fruB fruB 1456994 1458127 + bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein phosphoenolpyruvate (PEP)-dependent%2C sugar transporting phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1298 YPO1299 YPO1299 fruK fruK 1458124 1459062 + 1-phosphofructokinase converts fructose-1-phosphate and ATP to fructose-1%2C6-bisphosphate and ADP%3B highly specific for fructose-1-phopshate%3B similar to PfkB%3B forms homodimers gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1299 YPO1300 YPO1300 fruA fruA 1459077 1460777 + PTS system fructose-specific transporter subunits IIBC phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1300 YPO1301 YPO1301 psaE psaE 1461102 1461746 + regulatory protein gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1301 YPO1302 YPO1302 psaF psaF 1461743 1462231 + hypothetical protein gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1302 YPO1303 YPO1303 psaA psaA 1462776 1463252 + pH 6 antigen (antigen 4) (adhesin) gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1303 YPO1304 YPO1304 psaB psaB 1463379 1464200 + chaperone protein PsaB gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1304 YPO1305 YPO1305 psaC psaC 1464242 1466755 + outer membrane usher protein PsaC gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1305 YPO1306 YPO1306 nfo nfo 1466842 1467699 - endonuclease IV Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1306 YPO1307 YPO1307 YPO1307 1467863 1468951 - hypothetical protein gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1307 YPO1308 YPO1308 YPO1308 1469609 1470481 + DNA-binding transcriptional regulator gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1308 YPO1309 YPO1309 lysP lysP 1470739 1472250 + lysine transporter gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1309 YPO1310 YPO1310 YPO1310 1472536 1473681 + substrate-binding protein gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1310 YPO1311 YPO1311 YPO1311 1473876 1474958 + FecCD family membrane transport protein gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1311 YPO1312 YPO1312 YPO1312 1474955 1475743 + siderophore ABC transporter ATP-binding protein gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1312 YPO1313 YPO1313 YPO1313 1476003 1478000 + outer membrane receptor YiuR%3B outer membrane siderophore receptor gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1313 YPO1314 YPO1314 YPO1314 1478270 1478890 - glutathione S-transferase family protein gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1314 YPO1315 YPO1315 YPO1315 1479044 1479694 - hydrolase gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1315 YPO1316 YPO1316 YPO1316 1480181 1481248 + iron/ascorbate oxidoreductase family protein gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1316 YPO1317 YPO1317 YPO1317 1481476 1482300 + hypothetical protein gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1317 YPO1318 YPO1318 YPO1318 1482297 1483283 + ABC transporter ATP-binding protein gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1318 YPO1319 YPO1319 YPO1319 1483280 1483951 + ABC transporter integral membrane protein gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1319 YPO1320 YPO1320 dacC dacC 1484193 1485491 + D-alanyl-D-alanine carboxypeptidase gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1320 YPO1321 YPO1321 dcrA dcrA 1485931 1487232 - serine transporter gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1321 YPO1322 YPO1322 deoR deoR 1488332 1489096 - DNA-binding transcriptional repressor DeoR gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1322 YPO1323 YPO1323 deoC deoC 1489326 1489997 - deoxyribose-phosphate aldolase catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1323 YPO1324 YPO1324 YPO1324 1490255 1490851 - undecaprenyl pyrophosphate phosphatase gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1324 YPO1325 YPO1325 YPO1325 1490860 1491675 - hypothetical protein gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1325 YPO1326 YPO1326 YPO1326 1492008 1493696 - hypothetical protein gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1326 YPO1327 YPO1327 grxA grxA 1494106 1494369 - glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase%3B also involved in reducing some disulfides in a coupled system with glutathione reductase gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1327 YPO1328 YPO1328 YPO1328 1494832 1495146 + hypothetical protein YbjC%3B located in the same operon as the nfsA gene%3B member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress%3B induced by paraquat%3B regulated by SoxS%3B unknown function gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1328 YPO1329 YPO1329 YPO1329 1495162 1495281 + hypothetical protein No significant database hits gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1329 YPO1330 YPO1330 YPO1330 1495288 1495773 + hypothetical protein gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1330 YPO1331 YPO1331 potF potF 1496291 1497400 + putrescine ABC transporter substrate-binding protein gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1331 YPO1332 YPO1332 potG potG 1497571 1498704 + putrescine ABC transporter ATP-binding protein part of the PotFGHI ATP-dependent putrescine transporter gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1332 YPO1333 YPO1333 potH potH 1498729 1499694 + putrescine ABC transporter membrane protein gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1333 YPO1334 YPO1334 potI potI 1499691 1500536 + putrescine ABC transporter membrane protein gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1334 YPO1335 YPO1335 YPO1335 1500661 1501125 + hypothetical protein gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1335 YPO1336 YPO1336 rumB rumB 1501209 1502339 + 23S rRNA methyluridine methyltransferase RNA uridine methyltransferase B%3B catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1336 YPO1338 YPO1338 y1093 y1093 1502827 1503849 + transposase for insertion sequence IS100 gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1338 YPO1339 YPO1339 YPO1339 1503846 1504628 + transposase/IS protein ypmt1.57c gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1339 YPO1341 YPO1341 YPO1341 1505404 1505634 + hypothetical protein No significant database hits gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1341 YPO1342 YPO1342 YPO1342 1505975 1506901 + SPFH domain protein gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1342 YPO1343 YPO1343 YPO1343 1507268 1508404 + periplasmic binding protein gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1343 YPO1344 YPO1344 YPO1344 1508404 1509460 + gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1344 YPO1345 YPO1345 YPO1345 1509457 1510242 + transport ATP-binding protein gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1345 YPO1346 YPO1346 YPO1346 1510239 1511027 + hypothetical protein gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1346 YPO1347 YPO1347 YPO1347 1511020 1512390 + hypothetical protein gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1347 YPO1348 YPO1348 YPO1348 1512387 1513232 + hypothetical protein gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1348 YPO1349 YPO1349 artM artM 1513422 1514090 - arginine transporter permease ArtM with ArtPQJI acts to transport arginine across the inner membrane gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1349 YPO1350 YPO1350 artQ artQ 1514090 1514806 - arginine transporter permease ArtQ with ArtPMJI transports arginine across the inner membrane gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1350 YPO1351 YPO1351 artI artI 1514818 1515549 - arginine-binding periplasmic protein 1 gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1351 YPO1352 YPO1352 artP artP 1515570 1516298 - arginine transporter ATP-binding protein With ArtMQJI transports arginine across the inner membrane gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1352 YPO1353 YPO1353 YPO1353 1516593 1517153 - chorismate mutase catalyzes the interconversion of chorismate to prephenate gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1353 YPO1354 YPO1354 YPO1354 1517323 1517898 - lipoprotein induced during stationary phase and by acivicin (a glutamine analog)%3B regulated by Lrp and RpoS gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1354 YPO1355 YPO1355 YPO1355 1517995 1519002 - hypothetical protein gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1355 YPO1356 YPO1356 YPO1356 1519102 1520592 - hypothetical protein gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1356 YPO1357 YPO1357 ltaA ltaA 1520589 1521608 - L-threonine aldolase low- specificity%3B catalyzes the formation of acetaldehyde and glycine from L-threonine%3B acts on L-threonine%2C L-allo-threonine%2C L-threo-phenylserine%2C and L-erythro-phenylserine gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1357 YPO1358 YPO1358 poxB poxB 1521957 1523678 - pyruvate dehydrogenase catalyzes the formation of acetate from pyruvate gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1358 YPO1359 YPO1359 hcr hcr 1523822 1524844 - HCP oxidoreductase%2C NADH-dependent gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1359 YPO1360 YPO1360 hcp hcp 1524958 1526610 - hydroxylamine reductase catalyzes the reduction of hydroxylamine to ammonia and water gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1360 YPO1361 YPO1361 YPO1361 1526812 1527708 - hypothetical protein gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1361 YPO1362 YPO1362 YPO1362 1528061 1529728 + hypothetical protein gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1362 YPO1363 YPO1363 YPO1363 1529865 1530812 - virulence factor gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1363 YPO1364 YPO1364 YPO1364 1531046 1532161 + macrolide transporter subunit MacA confers macrolide resistance via active drug efflux gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1364 YPO1365 YPO1365 YPO1365 1532161 1534110 + macrolide transporter ATP-binding /permease with MacA is involved in the export of macrolide gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1365 YPO1366 YPO1366 cspD cspD 1534391 1534654 - cold shock-like protein gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1366 YPO1367 YPO1367 clpS clpS 1535015 1535335 + ATP-dependent Clp protease adaptor protein ClpS involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation%3B binds to the N-terminal domain of the chaperone ClpA gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1367 YPO1368 YPO1368 clpA clpA 1535361 1537637 + ATP-dependent Clp protease ATP-binding subunit ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease%3B directs protease to specific substrates gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1368 YPO1369 YPO1369 tnp tnp 1537930 1538388 + transposase for the IS1541 insertion element gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1369 YPO1370 YPO1370 infA infA 1538760 1538978 - translation initiation factor IF-1 stimulates the activities of the other two initiation factors%2C IF-2 and IF-3 gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1370 YPO1371 YPO1371 aat aat 1539144 1539854 - leucyl/phenylalanyl-tRNA--protein transferase leucyltransferase%3B phenylalanyltransferse%3B functions in the N-end rule pathway%3B transfers Leu%2C Phe%2C Met%2C from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1371 YPO1372 YPO1372 cydC cydC 1540073 1541797 - cysteine/glutathione ABC transporter membrane protein/ATP-binding protein in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1372 YPO1373 YPO1373 cydD cydD 1541800 1543584 - cysteine/glutathione ABC transporter membrane protein/ATP-binding protein in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1373 YPO1374 YPO1374 trxB trxB 1544025 1544987 - thioredoxin reductase gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1374 YPO1375 YPO1375 lrp lrp 1545754 1546248 + leucine-responsive transcriptional regulator mediates a global response to leucine%3B acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1375 YPO1376 YPO1376 ftsK ftsK 1546371 1550288 + cell division protein gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1376 YPO1377 YPO1377 lolA lolA 1550481 1551089 + outer-membrane lipoprotein carrier protein participates with LolB in the incorporation of lipoprotein into the outer membrane gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1377 YPO1378 YPO1378 YPO1378 1551100 1552443 + recombination factor protein RarA gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1378 YPO1379 YPO1379 serS serS 1552685 1553977 + seryl-tRNA synthetase catalyzes a two-step reaction%2C first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1379 YPO1380 YPO1380 YPO1380 1554240 1555388 + MFS family transporter protein gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1380 YPO1381 YPO1381 pflA pflA 1555542 1556276 - pyruvate formate lyase-activating enzyme 1 activates pyruvate formate-lyase 1 under anaerobic conditions gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1381 YPO1382 YPO1382 YPO1382 1557263 1557937 + hypothetical protein gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1382 YPO1383 YPO1383 pfl pfl 1558055 1560337 - formate acetyltransferase 1 gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1383 YPO1384 YPO1384 focA focA 1560393 1561250 - formate transporter gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1384 YPO1385 YPO1385 YPO1385 1561947 1563713 - hypothetical protein gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1385 YPO1386 YPO1386 ansB ansB 1563862 1564899 + L-asparaginase II catalyzes the formation of aspartate from asparagine%2C periplasmic%3B regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1386 YPO1387 YPO1387 YPO1387 1565168 1566262 + hypothetical protein gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1387 YPO1388 YPO1388 YPO1388 1566262 1568130 + hypothetical protein gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1388 YPO1389 YPO1389 serC serC 1568497 1569582 + phosphoserine aminotransferase catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate%3B required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1389 YPO1390 YPO1390 aroA aroA 1569745 1571031 + 3-phosphoshikimate 1-carboxyvinyltransferase catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1390 YPO1391 YPO1391 cmk cmk 1571344 1572036 + cytidylate kinase Catalyzes the formation of (d)CDP from ATP and (d)CMP gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1391 YPO1392 YPO1392 rpsA rpsA 1572210 1573883 + 30S ribosomal protein S1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit%3B autoregulates expression via a C-terminal domain%3B in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats%3B the S1 nucleic acid-binding domain is found associated with other proteins gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1392 YPO1393 YPO1393 ihfB ihfB 1573944 1574228 + integration host factor subunit beta This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1393 YPO1394 YPO1394 YPO1394 1574775 1577066 + hypothetical protein gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1394 YPO1395 YPO1395 msbA msbA 1577102 1578850 + lipid transporter ATP-binding protein/permease involved in the transport of lipid A across the inner membrane gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1395 YPO1396 YPO1396 lpxK lpxK 1578847 1579833 + tetraacyldisaccharide 4'-kinase transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1%2C4'-bis-phosphate gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1396 YPO1397 YPO1397 YPO1397 1579841 1581277 - hypothetical protein gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1397 YPO1398 YPO1398 cspB cspB 1581996 1582205 + cold shock-like protein gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1398 YPO1399 YPO1399 YPO1399 1582753 1582935 + hypothetical protein gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1399 YPO1400 YPO1400 kdsB kdsB 1582932 1583684 + 3-deoxy-manno-octulosonate cytidylyltransferase CMP-2-keto-3-deoxyoctulosonic acid synthetase%3B catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1400 YPO1401 YPO1401 YPO1401 1584047 1584940 + hypothetical protein gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1401 YPO1402 YPO1402 smtA smtA 1585713 1586498 + metallothionein SmtA involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens%3B expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc%3B NO elicits release of Zn ions from SmtA gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1402 YPO1403 YPO1403 mukF mukF 1586495 1587817 + condesin subunit F acts with MukB and MukE to condense the chromosome and allow for segregation during cell division gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1403 YPO1404 YPO1404 mukE mukE 1587825 1588526 + condesin subunit E acts with MukB and MukF to condense the chromosome and allow for segregation during cell division gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1404 YPO1405 YPO1405 mukB mukB 1588523 1592980 + cell division protein MukB SMC (structural maintenance of chromosomes) family of proteins%3B involved in chromosome condensatin and partitioning%3B forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ%3B mutations result in cell division defects gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1405 YPO1406 YPO1406 tnp tnp 1593196 1593654 + transposase for the IS1541 insertion element gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1406 YPO1407 YPO1407 YPO1407 1593938 1595794 + hypothetical protein gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1407 YPO1408 YPO1408 YPO1408 1596018 1596566 + hypothetical protein gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1408 YPO1409 YPO1409 YPO1409 1596627 1597274 + metallo-beta-lactamase superfamily protein gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1409 YPO1410 YPO1410 aspC aspC 1597698 1598888 - aromatic amino acid aminotransferase catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1410 YPO1411 YPO1411 ompF ompF 1599145 1600227 - porin gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1411 YPO1412 YPO1412 asnC asnC 1600525 1601925 - asparaginyl-tRNA synthetase catalyzes a two-step reaction%2C first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1412 YPO1413 YPO1413 pncB pncB 1602424 1603629 - nicotinate phosphoribosyltransferase catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1413 YPO1414 YPO1414 pepN pepN 1604345 1606960 + aminopeptidase gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1414 YPO1415 YPO1415 pyrD pyrD 1607578 1608588 + dihydroorotate dehydrogenase 2 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1415 YPO1416 YPO1416 YPO1416 1608771 1609322 + hypothetical protein gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1416 YPO1417 YPO1417 YPO1417 1609348 1610460 - iron-sulfur binding protein gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1417 YPO1418 YPO1418 rlmL rlmL 1610560 1612680 + 23S rRNA m(2)G2445 methyltransferase catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1418 YPO1419 YPO1419 uup uup 1612686 1614599 + ABC transporter ATPase Uup%3B in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity%3B mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1419 YPO1420 YPO1420 pqiA pqiA 1614728 1616014 + paraquat-inducible protein A gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1420 YPO1421 YPO1421 pqiB pqiB 1616028 1617653 + paraquat-inducible protein B gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1421 YPO1422 YPO1422 YPO1422 1617650 1618228 + lipoprotein gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1422 YPO1423 YPO1423 YPO1423 1618277 1618417 + hypothetical protein No significant database hits gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1423 YPO1423a YPO1423a rmf rmf 1618498 1618665 + ribosome modulation factor gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1423a YPO1424 YPO1424 tnp tnp 1618863 1619321 + transposase for the IS1541 insertion element gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1424 YPO1425a YPO1425a YPO1425a 1619438 1620421 - 3-oxoacyl-ACP synthase gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1425a YPO1426 YPO1426 YPO1426 1620482 1621264 - transposase/IS protein ypmt1.57c gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1426 YPO1427 YPO1427 y1093 y1093 1621261 1622283 - transposase for insertion sequence IS100 gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1427 YPO1427b YPO1427b YPO1427b 1622297 1622707 - hypothetical protein gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1427b YPO1430 YPO1430 fabA fabA 1623371 1623889 - 3-hydroxydecanoyl-ACP dehydratase catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2%2C3-decenoyl-ACP or 3%2C4-decenoyl-ACP gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1430 YPO1431 YPO1431 YPO1431 1623958 1625730 - Lon protease gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1431 YPO1433 YPO1433 YPO1433 1625920 1626375 + hypothetical protein gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1433 YPO1434 YPO1434 tnp tnp 1626544 1627002 - transposase for the IS1541 insertion element gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1434 YPO1435 YPO1435 ompA ompA 1627192 1628253 - outer membrane protein OmpA OmpA is believed to be a porin%2C involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli%2C and it is known to play a role as a phage receptor%2C a mediator of F-factor dependent conjugation%2C and in maintaining the structural shape of the outer membrane%3B 3a%3B II*%3B G%3B d gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1435 YPO1436 YPO1436 sulA sulA 1628611 1629117 - SOS cell division inhibitor gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1436 YPO1437 YPO1437 YPO1437 1629346 1629981 + hypothetical protein gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1437 YPO1438 YPO1438 YPO1438 1630083 1632221 - hypothetical protein gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1438 YPO1439 YPO1439 YPO1439 1632251 1632697 - hypothetical protein gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1439 YPO1440 YPO1440 helD helD 1632891 1634876 + DNA helicase IV catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1440 YPO1441 YPO1441 mgsA mgsA 1634937 1635401 - methylglyoxal synthase catalyzes the formation of methylglyoxal from glycerone phosphate gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1441 YPO1442 YPO1442 YPO1442 1635580 1636260 - hypothetical protein gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1442 YPO1443 YPO1443 YPO1443 1636576 1636992 + hypothetical protein gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1443 YPO1444 YPO1444 YPO1444 1637101 1637442 - heat shock protein HspQ gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1444 YPO1445 YPO1445 YPO1445 1637479 1638669 - hypothetical protein gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1445 YPO1446 YPO1446 YPO1446 1638763 1639041 + acylphosphatase catalyzes the hydrolysis of acylphosphate gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1446 YPO1447 YPO1447 YPO1447 1639093 1639419 - sulfite reductase subunit protein gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1447 YPO1450a YPO1450a YPO1450a 1640152 1640457 + hypothetical protein gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1450a YPO1450b YPO1450b YPO1450b 1640821 1641183 + hypothetical protein gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1450b YPO1450c YPO1450c YPO1450c 1641190 1641468 + hypothetical protein gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1450c YPO1450d YPO1450d YPO1450d 1641453 1642634 + hypothetical protein gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1450d YPO1451 YPO1451 YPO1451 1643068 1645485 - oxidoreductase gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1451 YPO1452 YPO1452 YPO1452 1645639 1646385 - short chain dehydrogenase gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1452 YPO1453 YPO1453 YPO1453 1647014 1647334 + hypothetical protein No significant database hits gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1453 YPO1454 YPO1454 YPO1454 1647664 1648122 + (3R)-hydroxymyristoyl-ACP dehydratase gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1454 YPO1455 YPO1455 YPO1455 1648112 1649395 + beta-ketoacyl-ACP synthase gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1455 YPO1456 YPO1456 YPO1456 1649388 1650134 + 3-ketoacyl-ACP reductase gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1456 YPO1457 YPO1457 YPO1457 1650150 1651388 + hydroxymethylglutaryl-coenzyme A synthase gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1457 YPO1458 YPO1458 YPO1458 1651381 1652100 + enoyl-CoA hydratase gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1458 YPO1459 YPO1459 YPO1459 1652093 1652854 + polyketide biosynthesis enoyl-CoA hydratase involved in polyketide production gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1459 YPO1460 YPO1460 YPO1460 1652857 1653645 + short chain dehydrogenase gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1460 YPO1461 YPO1461 YPO1461 1653684 1654172 + hypothetical protein gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1461 YPO1462 YPO1462 YPO1462 1654210 1654458 + acyl carrier protein gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1462 YPO1463 YPO1463 YPO1463 1654557 1655405 + acyl transferase gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1463 YPO1465 YPO1465 YPO1465 1656394 1656894 + hypothetical protein gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1465 YPO1466 YPO1466 YPO1466 1656937 1658487 + hypothetical protein gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1466 YPO1467 YPO1467 YPO1467 1658499 1659851 + hypothetical protein gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1467 YPO1468 YPO1468 YPO1468 1659848 1660534 + hypothetical protein gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1468 YPO1469 YPO1469 YPO1469 1660534 1662270 + hypothetical protein gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1469 YPO1470 YPO1470 YPO1470 1662274 1662765 + hypothetical protein gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1470 YPO1471 YPO1471 YPO1471 1663153 1665795 + ATPase subunit of ATP-dependent protease gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1471 YPO1472 YPO1472 YPO1472 1665798 1668146 + hypothetical protein gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1472 YPO1473 YPO1473 YPO1473 1668162 1670462 + hypothetical protein No significant database hits. Similar to YPO0966 (83.2%25 identity in 768 aa overlap) and YPO1476 (51.9%25 identity in 567 aa overlap) gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1473 YPO1474 YPO1474 YPO1474 1670459 1671232 + hypothetical protein gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1474 YPO1475 YPO1475 YPO1475 1671386 1671646 + hypothetical protein gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1475 YPO1476 YPO1476 YPO1476 1671662 1673845 + hypothetical protein gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1476 YPO1477a YPO1477a YPO1477a 1675221 1675541 - hypothetical protein gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1477a YPO1481 YPO1481 YPO1481 1676764 1677885 + hypothetical protein gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1481 YPO1482 YPO1482 YPO1482 1677882 1681304 + hypothetical protein gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1482 YPO1483 YPO1483 YPO1483 1681348 1682949 + hypothetical protein gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1483 YPO1484 YPO1484 YPO1484 1682940 1684025 + hypothetical protein No significant database hits. N-terminal region is similar to the N-terminus of YPO0873 (62.1%25 identity in 124 aa overlap) gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1484 YPO1484a YPO1484a YPO1484a 1684025 1684495 + hypothetical protein No significant database hits gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1484a YPO1485 YPO1485 YPO1485 1684716 1686479 + hypothetical protein gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1485 YPO1486 YPO1486 YPO1486 1686443 1687528 + hypothetical protein gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1486 YPO1487 YPO1487 YPO1487 1687596 1688084 + hypothetical protein gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1487 YPO1488 YPO1488 YPO1488 1688084 1688536 + hypothetical protein gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1488 YPO1489 YPO1489 YPO1489 1688561 1689928 + hypothetical protein gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1489 YPO1490 YPO1490 YPO1490 1690140 1690763 - hypothetical protein gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1490 YPO1491 YPO1491 ybiT ybiT 1691446 1693041 + ABC transporter ATP-binding protein gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1491 YPO1492 YPO1492 YPO1492 1693269 1693922 + hypothetical protein gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1492 YPO1493 YPO1493 y1062 y1062 1693966 1695174 - transposase gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1493 YPO1494 YPO1494 moeB moeB 1695310 1696077 - molybdopterin biosynthesis protein MoeB ATP-dependent adenylate transferase%2C transfers adenyl moiety to the MoeD subunit of molybdopterin synthase gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1494 YPO1495 YPO1495 moeA moeA 1696082 1697356 - molybdopterin biosynthesis protein MoeA is involved in the formation of active molybdenum cofactor and the chelation of molybdenum gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1495 YPO1496 YPO1496 YPO1496 1697891 1699201 - heme-binding protein gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1496 YPO1497 YPO1497 YPO1497 1699211 1699879 - ABC transporter ATP-binding protein gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1497 YPO1498 YPO1498 YPO1498 1699881 1701143 - hypothetical protein gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1498 YPO1499 YPO1499 YPO1499 1701145 1703505 - hypothetical protein gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1499 YPO1500 YPO1500 YPO1500 1703589 1703801 - hypothetical protein No significant database hits gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1500 YPO1501 YPO1501 YPO1501 1704058 1704900 - esterase gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1501 YPO1502 YPO1502 YPO1502 1704921 1706054 - alcohol dehydrogenase gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1502 YPO1503 YPO1503 YPO1503 1706334 1707203 - LysR family transcriptional regulator gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1503 YPO1504 YPO1504 YPO1504 1707339 1708490 + hypothetical protein gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1504 YPO1505 YPO1505 folE folE 1708674 1709336 + GTP cyclohydrolase I involved in the first step of tetrahydrofolate biosynthesis%3B catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1%2C2%2C3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water%3B forms a homopolymer gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1505 YPO1506 YPO1506 yeiB yeiB 1709391 1710557 + hypothetical protein gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1506 YPO1507 YPO1507 mglB mglB 1711305 1712312 + galactose-binding protein gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1507 YPO1508 YPO1508 mglA mglA 1712542 1714062 + galactose/methyl galaxtoside transporter ATP-binding protein with MglBC transports galactose or methyl galactoside into the cell%3B contains 2 ATP binding domains gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1508 YPO1509 YPO1509 mglC mglC 1714083 1715093 + beta-methylgalactoside transporter inner membrane protein ABC transporter%3B functions in galactose transport%3B part of MglA2C2B transporter complex gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1509 YPO1510 YPO1510 sanA sanA 1715538 1716275 - hypothetical protein gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1510 YPO1511 YPO1511 sfcA sfcA 1716556 1718253 - malate dehydrogenase malic enzyme%3B oxaloacetate-decarboxylating%3B NAD-dependent%3B catalyzes the formation of pyruvate form malate gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1511 YPO1512 YPO1512 cdd cdd 1718609 1719493 - cytidine deaminase Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1512 YPO1513 YPO1513 yohK yohK 1719819 1720514 - hypothetical protein gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1513 YPO1514 YPO1514 yohJ yohJ 1720511 1720918 - hypothetical protein gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1514 YPO1515 YPO1515 YPO1515 1721160 1722341 - multidrug resistance protein gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1515 YPO1516 YPO1516 YPO1516 1722674 1723930 - hypothetical protein No significant database hits gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1516 YPO1517 YPO1517 YPO1517 1723945 1725036 - sugar ABC transporter gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1517 YPO1518 YPO1518 YPO1518 1725555 1726381 + gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1518 YPO1519 YPO1519 YPO1519 1726646 1727428 - transposase/IS protein ypmt1.57c gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1519 YPO1520 YPO1520 y1093 y1093 1727425 1728447 - transposase for insertion sequence IS100 gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1520 YPO1521 YPO1521 tnp tnp 1728558 1729016 + transposase for the IS1541 insertion element gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1521 YPO1522 YPO1522 metG metG 1729180 1731207 - methionyl-tRNA synthetase methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1522 YPO1523 YPO1523 YPO1523 1731472 1732584 + ATPase gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1523 YPO1524 YPO1524 udk udk 1732829 1733470 + uridine kinase functions in pyrimidine salvage%3B pyrimidine ribonucleoside kinase%3B phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1524 YPO1525 YPO1525 dcd dcd 1733575 1734156 + deoxycytidine triphosphate deaminase Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1525 YPO1526 YPO1526 YPO1526 1734343 1736199 + assembly protein YegA%3B inner membrane protein involved in the assembly of outer membrane proteins (OMPs)%3B asmA-null mutants show low lipopolysaccharide (LPS) levels%2C suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity%2C resulting on altered assembly of OMPs gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1526 YPO1527 YPO1527 YPO1527 1736344 1737930 - hypothetical protein gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1527 YPO1528 YPO1528 YPO1528 1738372 1739151 + ferric iron reductase involved in ferric hydroximate transport gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1528 YPO1529 YPO1529 YPO1529 1739303 1740850 + decarboxylase gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1529 YPO1530 YPO1530 alcA alcA 1740885 1742183 + siderophore biosynthetic enzyme gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1530 YPO1531 YPO1531 alcB alcB 1742180 1742761 + siderophore biosynthetic enzyme gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1531 YPO1532 YPO1532 YPO1532 1742758 1744602 + siderophore biosynthetic enzyme gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1532 YPO1533 YPO1533 YPO1533 1744711 1745559 - iron-siderophore transporter ATP-binding protein gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1533 YPO1534 YPO1534 YPO1534 1745556 1746596 - iron-siderophore transporter membrane permease gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1534 YPO1535 YPO1535 YPO1535 1746583 1747623 - iron-siderophore transporter transmembrane protein gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1535 YPO1536 YPO1536 YPO1536 1747620 1748699 - iron-siderophore transporter substrate-binding protein gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1536 YPO1537 YPO1537 YPO1537 1748789 1751050 - iron-siderophore receptor gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1537 YPO1538 YPO1538 YPO1538 1751263 1753077 - siderophore biosynthetic enzyme gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1538 YPO1539 YPO1539 galU galU 1754023 1754913 + UTP-glucose-1-phosphate uridylyltransferase gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1539 YPO1540 YPO1540 galF galF 1754997 1755890 + UTP-glucose-1-phosphate uridylyltransferase gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1540 YPO1541 YPO1541 gnd gnd 1756276 1757685 + 6-phosphogluconate dehydrogenase catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1541 YPO1542 YPO1542 hisI hisI 1757885 1758499 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1542 YPO1543 YPO1543 hisF hisF 1758493 1759269 - imidazole glycerol phosphate synthase subunit HisF catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamideribonucleotide and glutamate%3B the HisF subunit acts as a cyclase gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1543 YPO1544 YPO1544 hisA hisA 1759251 1759988 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l-(5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1544 YPO1545 YPO1545 hisH hisH 1759994 1760584 - imidazole glycerol phosphate synthase subunit HisH with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamide ribonucleotide%2C and glutamate in histidine biosynthesis%3B the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1545 YPO1546 YPO1546 hisB hisB 1760584 1761651 - imidazole glycerol-phosphate dehydratase/histidinol phosphatase catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1546 YPO1547 YPO1547 hisC hisC 1761648 1762796 - histidinol-phosphate aminotransferase catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1547 YPO1548 YPO1548 hisD hisD 1762799 1764130 - histidinol dehydrogenase catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1548 YPO1549 YPO1549 hisG hisG 1764134 1765033 - ATP phosphoribosyltransferase long form of enzyme%3B catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate%3B crucial role in histidine biosynthesis%3B forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1549 YPO1551 YPO1551 YPO1551 1765739 1766566 + hypothetical protein gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1551 YPO1552 YPO1552 YPO1552 1766721 1767155 - hypothetical protein Doubtful CDS with no significant database hits. The N-terminal region is similar to a repeat region which is found scattered throughout the genome gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1552 YPO1553 YPO1553 YPO1553 1767400 1768395 - ribose transporter permease gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1553 YPO1554 YPO1554 YPO1554 1768392 1769932 - gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1554 YPO1556 YPO1556 YPO1556 1770218 1771309 + hypothetical protein member of the iron-containing alcohol dehydrogenase family%3B unknown function gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1556 YPO1557 YPO1557 yeeF yeeF 1771769 1773160 + amino acid permease gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1557 YPO1558 YPO1558 sbcB sbcB 1773897 1775327 - exonuclease I Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1558 YPO1559 YPO1559 YPO1559 1775590 1776729 + hypothetical protein gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1559 YPO1560 YPO1560 YPO1560 1777163 1777480 + hypothetical protein gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1560 YPO1561 YPO1561 y1062 y1062 1777851 1779059 + transposase for the IS285 insertion element gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1561 YPO1562 YPO1562 YPO1562 1779022 1782174 - hypothetical protein gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1562 YPO1563 YPO1563 YPO1563 1783103 1784503 + transmembrane transporter gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1563 YPO1564 YPO1564 YPO1564 1784512 1784937 - hypothetical protein gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1564 YPO1565 YPO1565 YPO1565 1785362 1786102 + oxidoreductase gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1565 YPO1566 YPO1566 YPO1566 1786150 1786992 + hydrolase gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1566 YPO1567 YPO1567 YPO1567 1787024 1788301 + racemase gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1567 YPO1568 YPO1568 YPO1568 1788380 1788553 + hypothetical protein No significant database hits gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1568 YPO1569 YPO1569 lldD lldD 1788598 1789743 + L-lactate dehydrogenase flavin mononucleotide-dependent dehydrogenase%3B functions in aerobic respiration and also has a role in anaerobic nitrate respiration gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1569 YPO1570 YPO1570 argG argG 1789948 1791315 - argininosuccinate synthase catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1570 YPO1571 YPO1571 yeeO yeeO 1791609 1793039 + hypothetical protein gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1571 YPO1572 YPO1572 YPO1572 1793067 1794407 - sugar transporter gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1572 YPO1573 YPO1573 YPO1573 1794443 1795351 - polysaccharide deacetylase gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1573 YPO1574 YPO1574 YPO1574 1795901 1796596 + hypothetical protein gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1574 YPO1575 YPO1575 YPO1575 1796713 1797225 + hypothetical protein gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1575 YPO1576 YPO1576 YPO1576 1798092 1798721 - GerR family transcriptional regulator gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1576 YPO1577 YPO1577 YPO1577 1798979 1800271 - C4-dicarboxylate transporter large subunit gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1577 YPO1578 YPO1578 YPO1578 1800291 1800797 - C4-dicarboxylate transporter small subunit gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1578 YPO1579 YPO1579 YPO1579 1800921 1801913 - C4-dicarboxylate transporter substrate-binding protein gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1579 YPO1580 YPO1580 YPO1580 1802436 1803176 + phosphopantetheinyl transferase gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1580 YPO1580a YPO1580a YPO1580a 1803382 1803546 - hypothetical protein gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1580a YPO1581 YPO1581 rafA rafA 1803563 1805689 - alpha-galactosidase gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1581 YPO1582 YPO1582 lacY lacY 1805767 1807011 - galactoside permease gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1582 YPO1583 YPO1583 y1062 y1062 1807069 1808277 + transposase for the IS285 insertion element gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1583 YPO1583a YPO1583a YPO1583a 1808240 1808536 - biofilm formation regulatory protein BssS gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1583a YPO1584 YPO1584 YPO1584 1808315 1808536 - gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1584 YPO1585 YPO1585 YPO1585 1808703 1808843 + hypothetical protein No significant database hits gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1585 YPO1586 YPO1586 dinI dinI 1809042 1809287 - DNA damage-inducible protein I gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1586 YPO1587 YPO1587 pyrC pyrC 1809600 1810646 - dihydroorotase catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1587 YPO1588 YPO1588 YPO1588 1810881 1811168 + hypothetical protein gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1588 YPO1589 YPO1589 y1062 y1062 1811445 1812653 - transposase for the IS285 insertion element gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1589 YPO1590 YPO1590 rne rne 1812749 1816414 - ribonuclease E bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein%3B forms part of the membrane-associated degradosome complex along with PNPase%2C RhlB%2C and enolase gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1590 YPO1591 YPO1591 rluC rluC 1816989 1817951 + 23S rRNA pseudouridylate synthase C catalyzes the transformation of uracil to pseudouracil at nucleotides U955%2C U2504%2C and U2580 in 23S rRNA gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1591 YPO1592 YPO1592 tnp tnp 1818171 1818629 + transposase for the IS1541 insertion element gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1592 YPO1593 YPO1593 maf maf 1818784 1819380 - Maf-like protein Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1593 YPO1594 YPO1594 YPO1594 1819522 1820046 + hypothetical protein gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1594 YPO1595 YPO1595 rpmF rpmF 1820059 1820226 + 50S ribosomal protein L32 some L32 proteins have zinc finger motifs consisting of CXXC while others do not gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1595 YPO1596 YPO1596 plsX plsX 1820260 1821294 + glycerol-3-phosphate acyltransferase PlsX involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsY gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1596 YPO1597 YPO1597 fabH fabH 1821301 1822251 + 3-oxoacyl-ACP synthase FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1597 YPO1598 YPO1598 fabD fabD 1822289 1823218 + malonyl CoA-ACP transacylase gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1598 YPO1599 YPO1599 fabG fabG 1823232 1823966 + 3-ketoacyl-ACP reductase catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1599 YPO1600 YPO1600 acpP acpP 1824120 1824356 + acyl carrier protein carries the fatty acid chain in fatty acid biosynthesis gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1600 YPO1601 YPO1601 fabF fabF 1824451 1825692 + 3-oxoacyl-ACP synthase FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1601 YPO1602 YPO1602 tnp tnp 1825892 1826350 + transposase for the IS1541 insertion element gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1602 YPO1603 YPO1603 pabC pabC 1826766 1827572 + 4-amino-4-deoxychorismate lyase catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1603 YPO1604 YPO1604 yceG yceG 1827861 1828886 + hypothetical protein gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1604 YPO1605 YPO1605 tmk tmk 1828876 1829514 + thymidylate kinase catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1605 YPO1606 YPO1606 holB holB 1829514 1830536 + DNA polymerase III subunit delta' catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1606 YPO1607 YPO1607 YPO1607 1830551 1831360 + metallodependent hydrolase gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1607 YPO1608 YPO1608 ptsG ptsG 1831666 1833099 + PTS system glucose-specific transporter subunits IIBC phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1608 YPO1609 YPO1609 tnp tnp 1833289 1833747 + transposase for the IS1541 insertion element gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1609 YPO1610 YPO1610 aroE aroE 1834190 1835008 + shikimate 5-dehydrogenase catalyzes the conversion of shikimate to 3-dehydroshikimate gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1610 YPO1611 YPO1611 YPO1611 1835182 1835535 + purine nucleoside phosphoramidase gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1611 YPO1612 YPO1612 ycfL ycfL 1835570 1835959 + lipoprotein gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1612 YPO1613 YPO1613 YPO1613 1836000 1836575 + lipoprotein gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1613 YPO1614 YPO1614 YPO1614 1836616 1837422 + hypothetical protein gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1614 YPO1615 YPO1615 ycfO ycfO 1837493 1838524 + beta-hexosaminidase hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1615 YPO1616 YPO1616 YPO1616 1838652 1839194 + hypothetical protein gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1616 YPO1617 YPO1617 ndh ndh 1839569 1840873 + NADH dehydrogenase gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1617 YPO1619 YPO1619 YPO1619 1841276 1841980 + gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1619 YPO1620 YPO1620 YPO1620 1841988 1842401 + hypothetical protein No significant database hits gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1620 YPO1621 YPO1621 y1062 y1062 1842497 1843705 + transposase for the IS285 insertion element gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1621 YPO1622 YPO1622 YPO1622 1844089 1844871 - transposase/IS protein ypmt1.57c gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1622 YPO1623 YPO1623 y1093 y1093 1844868 1845890 - transposase for insertion sequence IS100 gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1623 YPO1624 YPO1624 ycfJ ycfJ 1845995 1846534 + hypothetical protein gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1624 YPO1625 YPO1625 mfd mfd 1846773 1850219 - transcription-repair coupling factor gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1625 YPO1626 YPO1626 lolC lolC 1850489 1851691 + outer membrane-specific lipoprotein transporter subunit LolC part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1626 YPO1627 YPO1627 lolD lolD 1851684 1852388 + lipoprotein transporter ATP-binding protein outer membrane specific%3B part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins%2C from the inner membrane to the periplasmic chaperone gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1627 YPO1628 YPO1628 lolE lolE 1852385 1853635 + outer membrane-specific lipoprotein transporter subunit LolE part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1628 YPO1629 YPO1629 YPO1629 1853654 1854424 + N-acetyl-D-glucosamine kinase catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1629 YPO1630 YPO1630 cobB cobB 1854618 1855454 + NAD-dependent deacetylase Modulates the activities of several enzymes which are inactive in their acetylated form gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1630 YPO1631 YPO1631 pepT pepT 1855784 1857019 + peptidase T catalyzes the release of the N-terminal amino acid from a tripeptide gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1631 YPO1632 YPO1632 YPO1632 1857252 1858373 - hypothetical protein gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1632 YPO1633 YPO1633 phoQ phoQ 1858457 1859911 - sensor protein PhoQ gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1633 YPO1634 YPO1634 phoP phoP 1859917 1860588 - DNA-binding transcriptional regulator PhoP response regulator in two-component regulatory system with PhoQ%3B involved in magnesium starvation and stress gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1634 YPO1635 YPO1635 YPO1635 1860799 1861422 - lipoprotein gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1635 YPO1636 YPO1636 purB purB 1861610 1862980 - adenylosuccinate lyase Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1636 YPO1637 YPO1637 YPO1637 1863041 1863667 - hypothetical protein HflD%3B UPF0274%3B in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein%3B in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1637 YPO1638 YPO1638 mnmA mnmA 1863725 1864840 - tRNA-specific 2-thiouridylase MnmA catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1638 YPO1639 YPO1639 YPO1639 1865027 1865473 - hypothetical protein gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1639 YPO1640 YPO1640 ymfC ymfC 1865466 1866092 - pseudouridine synthase gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1640 YPO1641 YPO1641 icdA icdA 1866223 1867476 + isocitrate dehydrogenase Converts isocitrate to alpha ketoglutarate gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1641 YPO1642 YPO1642 cscR cscR 1867622 1868665 - sucrose operon repressor LacI family gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1642 YPO1643 YPO1643 YPO1643 1868941 1869201 - hypothetical protein No significant database hits gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1643 YPO1644 YPO1644 aer aer 1869321 1870901 - methyl-accepting chemotaxis protein gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1644 YPO1645 YPO1645 YPO1645 1871821 1872678 - hypothetical protein gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1645 YPO1646 YPO1646 YPO1646 1872838 1873221 + hypothetical protein gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1646 YPO1647 YPO1647 YPO1647 1873255 1873452 + gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1647 YPO1648 YPO1648 YPO1648 1873753 1875078 + phosphoanhydride phosphorylase gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1648 YPO1649 YPO1649 YPO1649 1875380 1875595 - hypothetical protein gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1649 YPO1650 YPO1650 YPO1650 1875886 1876788 - hypothetical protein gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1650 YPO1651 YPO1651 YPO1651 1876877 1877326 - AsnC family transcriptional regulator gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1651 YPO1652 YPO1652 ylaC ylaC 1877817 1878350 - hypothetical protein gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1652 YPO1653 YPO1653 YPO1653 1878633 1879643 - zinc-binding dehydrogenase gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1653 YPO1654 YPO1654 lacZ lacZ 1880050 1883232 - beta-D-galactosidase forms a homotetramer%3B hydrolyzes lactose disaccharide to galactose and glucose%3B converts lactose to allolactose which is the natural inducer of the lac operon gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1654 YPO1655 YPO1655 cspC cspC 1883773 1883985 + cold shock protein gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1655 YPO1655a YPO1655a YPO1655a 1883592 1884034 + ncRNA-cspA thermoregulator ncRNA gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1655a YPO1656 YPO1656 YPO1656 1884200 1884391 + hypothetical protein gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1656 YPO1657 YPO1657 cheM cheM 1884574 1886275 - gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1657 YPO1660 YPO1660 mgtC mgtC 1887422 1888132 + Mg(2+) transport ATPase protein C gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1660 YPO1661 YPO1661 mgtB mgtB 1888533 1891232 + Mg(2+) transport ATPase protein B gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1661 YPO1662 YPO1662 flhD flhD 1892411 1892771 + gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1662 YPO1663 YPO1663 flhC flhC 1892772 1893356 + transcriptional activator FlhC With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1663 YPO1664 YPO1664 motA motA 1893561 1894448 + flagellar motor protein MotA With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1664 YPO1665 YPO1665 motB motB 1894445 1895728 + flagellar motor protein MotB with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1665 YPO1666 YPO1666 cheA cheA 1895739 1897910 + chemotaxis protein CheA chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY%3B sensory histidine kinase/signal sensing protein%3B CheA is the histidine kinase component gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1666 YPO1667 YPO1667 cheW cheW 1898073 1898570 + purine-binding chemotaxis protein gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1667 YPO1668 YPO1668 yihN yihN 1898862 1900097 - hypothetical protein gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1668 YPO1669 YPO1669 YPO1669 1900110 1900487 - hypothetical protein gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1669 YPO1670 YPO1670 YPO1670 1900484 1901470 - hypothetical protein gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1670 YPO1671 YPO1671 YPO1671 1901648 1902325 + DNA-binding protein gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1671 YPO1672 YPO1672 YPO1672 1902800 1906606 + hypothetical protein gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1672 YPO1673 YPO1673 YPO1673 1907134 1910010 + hypothetical protein gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1673 YPO1674 YPO1674 YPO1674 1910079 1910780 + hypothetical protein gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1674 YPO1675 YPO1675 cheD cheD 1911021 1912694 + methyl-accepting chemotaxis protein gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1675 YPO1676 YPO1676 YPO1676 1912878 1914488 + gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1676 YPO1678 YPO1678 cheR cheR 1914661 1915533 + chemotaxis methyltransferase CheR methylates the MCP gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1678 YPO1679 YPO1679 cheB cheB 1915533 1916582 + chemotaxis-specific methylesterase regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1679 YPO1680 YPO1680 cheY cheY 1916683 1917072 + chemotaxis regulatory protein CheY chemotaxis regulator that%2C when phosphorylated%2C interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1680 YPO1681 YPO1681 cheZ cheZ 1917082 1917726 + chemotaxis regulator CheZ cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1681 YPO1682 YPO1682 YPO1682 1918040 1918159 - hypothetical protein gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1682 YPO1683 YPO1683 YPO1683 1918291 1919055 + N-acetylmuramoyl-L-alanine amidase gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1683 YPO1684 YPO1684 YPO1684 1919412 1921622 + surface protein gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1684 YPO1686 YPO1686 YPO1686 1922143 1923096 + hypothetical protein gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1686 YPO1687 YPO1687 alr alr 1923715 1924944 - alanine racemase converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1687 YPO1687a YPO1687a YPO1687a 1925346 1925540 - hypothetical protein gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1687a YPO1688 YPO1688 YPO1688 1926119 1926367 + hypothetical protein No significant database hits gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1688 YPO1689 YPO1689 YPO1689 1926760 1928016 + lipoprotein gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1689 YPO1690 YPO1690 YPO1690 1928171 1928404 + hypothetical protein No significant database hits gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1690 YPO1691 YPO1691 YPO1691 1928939 1929721 - transposase/IS protein ypmt1.57c gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1691 YPO1692 YPO1692 y1093 y1093 1929718 1930740 - transposase for insertion sequence IS100 gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1692 YPO1693 YPO1693 YPO1693 1931147 1931536 + hypothetical protein gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1693 YPO1694 YPO1694 YPO1694 1931646 1931885 - hypothetical protein gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1694 YPO1695 YPO1695 YPO1695 1932093 1933082 - hypothetical protein gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1695 YPO1696 YPO1696 YPO1696 1933288 1935735 - outer membrane usher protein gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1696 YPO1697 YPO1697 YPO1697 1935923 1936675 - chaperone protein gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1697 YPO1698 YPO1698 YPO1698 1936706 1937263 - hypothetical protein gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1698 YPO1699 YPO1699 YPO1699 1937284 1937814 - hypothetical protein gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1699 YPO1700 YPO1700 YPO1700 1937820 1938374 - hypothetical protein gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1700 YPO1701 YPO1701 YPO1701 1938853 1941504 - hypothetical protein gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1701 YPO1702 YPO1702 yebS yebS 1941473 1942825 - hypothetical protein gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1702 YPO1703 YPO1703 YPO1703 1942952 1943449 + hypothetical protein gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1703 YPO1704 YPO1704 proQ proQ 1943545 1944258 + solute/DNA competence effector affects solute and DNA transport through an unknown mechanism gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1704 YPO1705 YPO1705 prc prc 1944278 1946350 + carboxy-terminal protease Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1705 YPO1706 YPO1706 htpX htpX 1946824 1947705 + heat shock protein HtpX metalloprotease gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1706 YPO1707 YPO1707 YPO1707 1948363 1948905 + fimbrial protein gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1707 YPO1708 YPO1708 ecpD ecpD 1949058 1949837 + chaperone protein gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1708 YPO1709 YPO1709 htrE htrE 1949919 1952531 + outer membrane usher protein gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1709 YPO1710 YPO1710 YPO1710 1952528 1953691 + fimbrial protein gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1710 YPO1711 YPO1711 YPO1711 1953688 1954491 + chaperone protein gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1711 YPO1712 YPO1712 YPO1712 1954545 1955912 - transport protein gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1712 YPO1713 YPO1713 ogl ogl 1956239 1957405 + oligogalacturonate lyase gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1713 YPO1714 YPO1714 kdgR kdgR 1957592 1958383 + IclR family transcriptional regulator gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1714 YPO1715 YPO1715 ybjR ybjR 1958768 1959619 + N-acetylmuramoyl-L-alanine amidase gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1715 YPO1716 YPO1716 gltP gltP 1959834 1961231 - transport protein gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1716 YPO1717 YPO1717 ydjM ydjM 1961429 1961977 - hypothetical protein gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1717 YPO1718 YPO1718 YPO1718 1962457 1963167 - hypothetical protein gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1718 YPO1719 YPO1719 YPO1719 1963465 1964757 - sugar-binding protein gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1719 YPO1720 YPO1720 YPO1720 1964773 1965900 - sugar ABC transporter gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1720 YPO1721 YPO1721 YPO1721 1965914 1966834 - sugar ABC transporter (permease) gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1721 YPO1722 YPO1722 YPO1722 1966827 1967717 - sugar ABC transporter permease gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1722 YPO1723 YPO1723 kdgC kdgC 1967758 1969425 - exopolygalacturonate lyase gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1723 YPO1724 YPO1724 kduD1 kduD1 1969761 1970522 - 2-deoxy-D-gluconate 3-dehydrogenase catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1724 YPO1725 YPO1725 kduI kduI 1970614 1971450 - 5-keto-4-deoxyuronate isomerase 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase%3B catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2%2C5-hexodiulosonate gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1725 YPO1726 YPO1726 kdgF kdgF 1971786 1972112 + gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1726 YPO1727 YPO1727 y1062 y1062 1972184 1973392 + transposase for the IS285 insertion element gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1727 YPO1729 YPO1729 y1093 y1093 1974768 1975790 + transposase for insertion sequence IS100 gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1729 YPO1730 YPO1730 YPO1730 1975787 1976569 + transposase/IS protein ypmt1.57c gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1730 YPO1732 YPO1732 YPO1732 1977238 1978050 - hypothetical protein gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1732 YPO1733 YPO1733 YPO1733 1978440 1978724 - hypothetical protein gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1733 YPO1734 YPO1734 YPO1734 1978961 1979812 - hypothetical protein gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1734 YPO1735 YPO1735 YPO1735 1979915 1981633 - ABC transporter ATP-binding protein gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1735 YPO1736 YPO1736 YPO1736 1982289 1982453 + hypothetical protein gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1736 YPO1737 YPO1737 YPO1737 1982535 1982921 - AraC family transcriptional regulator gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1737 YPO1738 YPO1738 YPO1738 1983477 1983716 + hypothetical protein gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1738 YPO1739 YPO1739 YPO1739 1983807 1984025 - hypothetical protein gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1739 YPO1740 YPO1740 YPO1740 1984623 1984898 + hypothetical protein gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1740 YPO1741 YPO1741 YPO1741 1985161 1985460 + hypothetical protein gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1741 YPO1742 YPO1742 YPO1742 1985569 1985814 + hypothetical protein gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1742 YPO1743 YPO1743 aroP aroP 1986051 1987424 + aromatic amino acid transport protein gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1743 YPO1744 YPO1744 pagP pagP 1987729 1988328 - palmitoyl transferase catalyzes the transfer of palmitate to lipid A gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1744 YPO1745 YPO1745 YPO1745 1989330 1989446 + hypothetical protein gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1745 YPO1745a YPO1745a YPO1745a 1989313 1989741 + ncRNA-cspA thermoregulator ncRNA gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1745a YPO1746 YPO1746 cspC cspC 1989489 1989698 + cold shock-like protein CspC gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1746 YPO1747 YPO1747 YPO1747 1989789 1990544 - hypothetical protein gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1747 YPO1748 YPO1748 rrmA rrmA 1990939 1991778 + 23S rRNA methyltransferase methylates the guanosine in position 745 of 23S rRNA%3B required for translation and cell growth gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1748 YPO1749 YPO1749 YPO1749 1992000 1992278 - hypothetical protein gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1749 YPO1750 YPO1750 y1093 y1093 1992646 1993668 + transposase for insertion sequence IS100 gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1750 YPO1751 YPO1751 YPO1751 1993665 1994447 + transposase/IS protein ypmt1.57c gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1751 YPO1751a YPO1751a YPO1751a 1994498 1996540 - PAS/PAC domain-containing protein gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1751a YPO1753 YPO1753 fcuA fcuA 1996899 1999175 + ferrichrome receptor protein gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1753 YPO1754 YPO1754 yebN yebN 1999336 1999905 - hypothetical protein gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1754 YPO1755 YPO1755 yobD yobD 2000334 2000795 - hypothetical protein gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1755 YPO1756 YPO1756 manZ manZ 2000995 2001882 - PTS system mannose-specific transporter subunit IID hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IID with IIC forms the translocation channel gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1756 YPO1757 YPO1757 manY manY 2001889 2002686 - PTS system mannose-specific transporter subunit C gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1757 YPO1758 YPO1758 gptB gptB 2002778 2003752 - PTS system mannose-specific transporter subunit IIAB gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1758 YPO1759 YPO1759 yoaE yoaE 2004462 2005917 + gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1759 YPO1760 YPO1760 hpaR hpaR 2006019 2006486 - homoprotocatechuate degradative operon repressor gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1760 YPO1761 YPO1761 YPO1761 2006870 2007502 + fumarylacetoacetate hydrolase family gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1761 YPO1761a YPO1761a YPO1761a 2007499 2008263 + fumarylacetoacetate hydrolase family protein gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1761a YPO1763 YPO1763 hpaE hpaE 2008260 2009657 + 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1763 YPO1764 YPO1764 hpaD hpaD 2009776 2010633 + 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1764 YPO1765 YPO1765 hpaF hpaF 2010658 2011056 + 5-carboxymethyl-2-hydroxymuconate delta-isomerase gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1765 YPO1766 YPO1766 hpaH hpaH 2011050 2011853 + 2-oxo-hept-3-ene-1%2C7-dioate hydratase gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1766 YPO1767 YPO1767 hpaI hpaI 2011864 2012670 + 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1767 YPO1768 YPO1768 hpaX hpaX 2012696 2014063 + 4-hydroxyphenylacetate permease gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1768 YPO1769 YPO1769 hpaB hpaB 2014131 2015693 + 4-hydroxyphenylacetate 3-monooxygenase gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1769 YPO1770 YPO1770 hpaC hpaC 2015714 2016211 + 4-hydroxyphenylacetate 3-monooxygenase coupling protein gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1770 YPO1771 YPO1771 sdaA sdaA 2016491 2017855 - L-serine dehydratase gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1771 YPO1772 YPO1772 YPO1772 2018563 2019162 - hypothetical protein gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1772 YPO1773 YPO1773 pabB pabB 2019159 2020535 - para-aminobenzoate synthase component I gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1773 YPO1774 YPO1774 YPO1774 2020700 2020957 + hypothetical protein gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1774 YPO1775 YPO1775 purT purT 2021083 2022264 - phosphoribosylglycinamide formyltransferase 2 non-folate utilizing enzyme%2C catalyzes the production of beta-formyl glycinamide ribonucleotide from formate%2C ATP%2C and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP%3B involved in de novo purine biosynthesis gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1775 YPO1776 YPO1776 dbpA dbpA 2022577 2023959 + ATP-dependent RNA helicase DbpA exhibits an RNA-dependent ATPase activity%2C specifically stimulated by bacterial 23S rRNA gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1776 YPO1777 YPO1777 YPO1777 2024053 2024373 + hypothetical protein gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1777 YPO1778 YPO1778 YPO1778 2024413 2024721 + hypothetical protein gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1778 YPO1779 YPO1779 YPO1779 2024813 2025238 + hypothetical protein secreted protein%3B unknown function gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1779 YPO1780 YPO1780 ptrB ptrB 2025548 2027599 + oligopeptidase B gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1780 YPO1781 YPO1781 pip pip 2028321 2029271 + proline iminopeptidase gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1781 YPO1782 YPO1782 holE holE 2029331 2029561 - DNA polymerase III subunit theta gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1782 YPO1783 YPO1783 ftn ftn 2029962 2030471 + ferritin gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1783 YPO1784 YPO1784 YPO1784 2030868 2031254 + copper resistance protein gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1784 YPO1785 YPO1785 YPO1785 2031257 2032141 + copper resistance protein D gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1785 YPO1786 YPO1786 yebY yebY 2032223 2032579 + hypothetical protein gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1786 YPO1788 YPO1788 YPO1788 2033102 2033428 - acyl carrier protein gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1788 YPO1789 YPO1789 YPO1789 2033422 2033880 - hypothetical protein gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1789 YPO1790 YPO1790 flhB flhB 2034412 2035572 + flagellar biosynthesis protein FlhB membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export%3B Yersinia has 2 copies of flhB%3B Bradyrhizobium has one thick flagellum and several thin flagella%3B the Bradyrhizobium protein in this cluster is associated with the thin flagella gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1790 YPO1791 YPO1791 flhA flhA 2035572 2037650 + flagellar biosynthesis protein FlhA membrane protein involved in the flagellar export apparatus gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1791 YPO1792 YPO1792 flhE flhE 2037650 2038072 + flagellar protein FlhE gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1792 YPO1793 YPO1793 inv inv 2038682 2042350 + gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1793 YPO1794 YPO1794 tnp tnp 2039730 2040188 + transposase for the IS1541 insertion element gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1794 YPO1796 YPO1796 flgN flgN 2042540 2042980 - flagellar synthesis protein FlgN gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1796 YPO1797 YPO1797 flgM flgM 2042999 2043301 - anti-sigma28 factor FlgM regulates the flagellar specific sigma28 transcription factor gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1797 YPO1798 YPO1798 flgA flgA 2043452 2044150 - flagellar basal body P-ring biosynthesis protein FlgA required for the assembly of the flagellar basal body P-ring gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1798 YPO1799 YPO1799 flgB flgB 2044389 2044802 + flagellar basal-body rod protein FlgB fla FII gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1799 YPO1800 YPO1800 flgC flgC 2044808 2045212 + flagellar basal body rod protein FlgC fla FIII gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1800 YPO1801 YPO1801 flgD flgD 2045227 2045904 + flagellar basal body rod modification protein acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of some flagellar genes%3B in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1801 YPO1802 YPO1802 flgE flgE 2046106 2047392 + flagellar hook protein FlgE the hook connects flagellar basal body to the flagellar filament gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1802 YPO1803 YPO1803 flgF flgF 2047414 2048043 + flagellar basal body rod protein FlgF fla FVI gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1803 YPO1804 YPO1804 flaL flaL 2048024 2048722 + flagellar basal-body rod protein FlgG fla FVII gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1804 YPO1805 YPO1805 flgH flgH 2048866 2049555 + flagellar basal body L-ring protein fla FVIII gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1805 YPO1806 YPO1806 flgI flgI 2049570 2050679 + flagellar basal body P-ring biosynthesis protein FlgA fla FIX gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1806 YPO1807 YPO1807 flgJ flgJ 2050679 2051623 + flagellar rod assembly protein/muramidase FlgJ fla FX gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1807 YPO1808 YPO1808 flgK flgK 2052494 2054158 + flagellar hook-associated protein FlgK with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1808 YPO1809 YPO1809 flgL flgL 2054264 2055277 + flagellar hook-associated protein FlgL with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1809 YPO1810 YPO1810 YPO1810 2055306 2056283 - transcriptional regulator gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1810 YPO1811 YPO1811 YPO1811 2056525 2058591 + short chain dehydrogenase gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1811 YPO1812 YPO1812 YPO1812 2058739 2059800 + sugar transport system permease gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1812 YPO1813 YPO1813 YPO1813 2059843 2060838 + sugar-binding protein gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1813 YPO1814 YPO1814 YPO1814 2060904 2062481 + sugar ABC transporter ATP-binding protein gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1814 YPO1815 YPO1815 YPO1815 2062577 2063506 + sugar ABC transporter permease gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1815 YPO1816 YPO1816 YPO1816 2063555 2064514 + sugar kinase gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1816 YPO1817 YPO1817 YPO1817 2064772 2065191 - hypothetical protein gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1817 YPO1818 YPO1818 YPO1818 2065236 2065418 - hypothetical protein gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1818 YPO1819 YPO1819 fliR fliR 2065625 2066407 - flagellar biosynthesis protein FliR FliR%2C with proteins FliP and FliQ%2C forms the core of the central channel in the flagella export apparatus gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1819 YPO1820 YPO1820 fliP fliP 2066785 2067609 - flagellar biosynthesis protein FliP FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1820 YPO1820a YPO1820a fliQ fliQ 2066410 2066679 - flagellar biosynthesis protein FliQ with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1820a YPO1821 YPO1821 fliO fliO 2067606 2068142 - flagellar protein FliO gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1821 YPO1822 YPO1822 fliN fliN 2068142 2068558 - flagellar motor switch protein FliN One of three proteins involved in switching the direction of the flagellar rotation gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1822 YPO1823 YPO1823 fliM fliM 2068555 2069556 - flagellar motor switch protein FliM with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1823 YPO1824 YPO1824 fliL fliL 2069562 2070032 - flagellar basal body protein FliL interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1824 YPO1825 YPO1825 fliK fliK 2070299 2071651 - flagellar hook-length control protein FliK gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1825 YPO1826 YPO1826 fliJ fliJ 2071648 2072094 - flagellar biosynthesis chaperone rod/hook and filament chaperone gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1826 YPO1827 YPO1827 fliI fliI 2072194 2073648 - flagellum-specific ATP synthase fla AIII gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1827 YPO1828 YPO1828 fliH fliH 2073611 2074327 - flagellar assembly protein H fla AII.3 gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1828 YPO1829 YPO1829 fliG fliG 2074320 2075312 - flagellar motor switch protein G fla AII.2 gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1829 YPO1830 YPO1830 fliF fliF 2075309 2077021 - flagellar MS-ring protein fla AII.1 gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1830 YPO1831 YPO1831 fliE fliE 2077374 2077685 + flagellar hook-basal body protein FliE fla AI gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1831 YPO1832 YPO1832 YPO1832 2078073 2078252 + hypothetical protein No significant database hits gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1832 YPO1833 YPO1833 YPO1833 2078263 2078739 + hypothetical protein gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1833 YPO1834 YPO1834 YPO1834 2078925 2079536 - glycosidase gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1834 YPO1835 YPO1835 YPO1835 2079697 2082652 - gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1835 YPO1837 YPO1837 YPO1837 2083006 2083881 - AraC family transcriptional regulator gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1837 YPO1839 YPO1839 fliT fliT 2084182 2084544 - flagellar biosynthesis protein FliT binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway%3B acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription%3B member of the type III cytoplasmic chaperone family gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1839 YPO1840 YPO1840 fliS fliS 2084555 2084953 - flagellar protein FliS flagellin specific chaperone gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1840 YPO1841 YPO1841 fliD fliD 2084964 2086364 - flagellar capping protein involved in flagellin assembly gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1841 YPO1842 YPO1842 fliC fliC 2086661 2087770 + flagellin structural flagella protein gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1842 YPO1843 YPO1843 fliA fliA 2088117 2088839 + flagellar biosynthesis sigma factor sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor directs late flagellar biosynthesis genes gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1843 YPO1844 YPO1844 fliZ fliZ 2089061 2089570 + flagella biosynthesis protein FliZ expression activator of the class 2 type of flagellar operons%2C essential to achieve maximal cell motility%3B activator of type 1 fimbrial gene expression%3B cell density-responsive regulator%3B FliZ in Salmonella typhimurium induces HilA%2C an activator of invasion genes necessary to achieve full virulence gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1844 YPO1845 YPO1845 yedO yedO 2089859 2090851 + D-cysteine desulfhydrase catalyzes the formation of pyruvate from D-cysteine gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1845 YPO1846 YPO1846 fliY fliY 2090975 2091775 + cystine transporter subunit gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1846 YPO1847 YPO1847 yecS yecS 2091775 2092437 + amino-acid ABC transporter permease gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1847 YPO1848 YPO1848 yecC yecC 2092440 2093201 + amino-acid ABC transporter ATP-binding protein YecC gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1848 YPO1849 YPO1849 YPO1849 2093493 2093831 - hypothetical protein gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1849 YPO1850 YPO1850 YPO1850 2093865 2094200 - hypothetical protein No significant database hits gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1850 YPO1851 YPO1851 putA putA 2094664 2098635 - trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase proline utilization protein A%3B multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate%3B in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus%3B forms dimers and is a peripherally membrane-associated protein gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1851 YPO1853 YPO1853 putP putP 2099207 2100691 + proline permease gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1853 YPO1854 YPO1854 YPO1854 2101024 2101872 + hypothetical protein gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1854 YPO1855 YPO1855 YPO1855 2101902 2103032 + hypothetical protein gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1855 YPO1856 YPO1856 YPO1856 2103043 2104347 + hypothetical protein gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1856 YPO1857 YPO1857 wrbA wrbA 2104433 2105032 - TrpR binding protein WrbA stationary phase protein that binds TrpR repressor gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1857 YPO1858 YPO1858 YPO1858 2105426 2106604 + N-acetylneuraminic acid mutarotase gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1858 YPO1859 YPO1859 cycA cycA 2106730 2108154 - D-alanine/D-serine/glycine permease involved in the transport across the cytoplasmic membrane of D-alanine%2C D-serine and glycine gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1859 YPO1860 YPO1860 ail ail 2109269 2109820 + attachment invasion locus protein gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1860 YPO1862 YPO1862 YPO1862 2110160 2110414 + hypothetical protein gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1862 YPO1863 YPO1863 glpM glpM 2110442 2110783 - hypothetical protein gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1863 YPO1864 YPO1864 YPO1864 2110911 2111135 - hypothetical protein gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1864 YPO1865 YPO1865 uvrY uvrY 2111798 2112454 + response regulator in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system%3B in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1865 YPO1866 YPO1866 uvrC uvrC 2112426 2114279 + excinuclease ABC subunit C The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1866 YPO1867 YPO1867 pgsA pgsA 2114338 2114886 + phosphatidylglycerophosphate synthetase gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1867 YPO1868 YPO1868 YPO1868 2115626 2116141 - hypothetical protein gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1868 YPO1870 YPO1870 YPO1870 2116848 2116994 + hypothetical protein No significant database hits gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1870 YPO1870a YPO1870a YPO1870a 2117239 2117412 + hypothetical protein gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1870a YPO1871 YPO1871 YPO1871 2117850 2118347 - gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1871 YPO1873 YPO1873 tnpA tnpA 2118567 2119526 - transposase gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1873 YPO1874 YPO1874 YPO1874 2119598 2120044 - hypothetical protein gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1874 YPO1876 YPO1876 YPO1876 2120433 2120687 - hypothetical protein gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1876 YPO1877 YPO1877 YPO1877 2120692 2121209 - gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1877 YPO1879 YPO1879 YPO1879 2121644 2121931 - hypothetical protein gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1879 YPO1880 YPO1880 YPO1880 2121948 2122247 - hypothetical protein gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1880 YPO1881 YPO1881 YPO1881 2122244 2122603 - hypothetical protein gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1881 YPO1882 YPO1882 YPO1882 2122887 2123177 + hypothetical protein gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1882 YPO1883 YPO1883 YPO1883 2123243 2124319 + hypothetical protein gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1883 YPO1884 YPO1884 y1062 y1062 2124367 2125565 + gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1884 YPO1886 YPO1886 YPO1886 2125983 2126552 - hypothetical protein gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1886 YPO1887 YPO1887 YPO1887 2126564 2126998 - hypothetical protein gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1887 YPO1890 YPO1890 YPO1890 2127967 2128764 + GntR family transcriptional regulator gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1890 YPO1892 YPO1892 YPO1892 2129432 2130445 + oxidoreductase gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1892 YPO1893 YPO1893 YPO1893 2130475 2131743 + exported solute-binding protein gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1893 YPO1894 YPO1894 YPO1894 2131810 2132670 + binding-protein-dependent transporter inner membrane component gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1894 YPO1895 YPO1895 YPO1895 2132663 2133490 + binding-protein-dependent transporter inner membrane component gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1895 YPO1896 YPO1896 YPO1896 2133515 2134632 + gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1896 YPO1898 YPO1898 YPO1898 2134882 2135067 - hypothetical protein gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1898 YPO1900 YPO1900 y1093 y1093 2135545 2136567 + transposase for insertion sequence IS100 gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1900 YPO1901 YPO1901 YPO1901 2136564 2137346 + transposase/IS protein ypmt1.57c gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1901 YPO1902 YPO1902 YPO1902 2137945 2138526 - hypothetical protein gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1902 YPO1903 YPO1903 YPO1903 2138532 2138696 - hypothetical protein gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1903 YPO1904 YPO1904 YPO1904 2138715 2138900 - transcriptional regulator gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1904 YPO1905 YPO1905 YPO1905 2139040 2139967 - gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1905 YPO1906 YPO1906 fyuA fyuA 2140840 2142861 - pesticin/yersiniabactin receptor protein gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1906 YPO1907 YPO1907 irp5 irp5 2142992 2144569 - yersiniabactin siderophore biosynthetic protein gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1907 YPO1908 YPO1908 irp4 irp4 2144573 2145376 - yersiniabactin biosynthetic protein YbtT gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1908 YPO1909 YPO1909 irp3 irp3 2145373 2146473 - yersiniabactin biosynthetic protein YbtU gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1909 YPO1910 YPO1910 irp1 irp1 2146470 2155961 - yersiniabactin biosynthetic protein gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1910 YPO1911 YPO1911 irp2 irp2 2156049 2162156 - yersiniabactin biosynthetic protein gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1911 YPO1912 YPO1912 ybtA ybtA 2162347 2163306 - transcriptional regulator YbtA gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1912 YPO1913 YPO1913 irp6 irp6 2163473 2165275 + lipoprotein inner membrane ABC transporter gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1913 YPO1914 YPO1914 irp7 irp7 2165262 2167064 + ABC transporter permease gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1914 YPO1915 YPO1915 irp8 irp8 2167057 2168337 + signal transducer gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1915 YPO1916 YPO1916 ybtS ybtS 2168365 2169669 + salicylate synthase Irp9 catalyzes the conversion of chorismate to salicylate in the biosynthesis of the siderophore yersiniabactin gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1916 YPO1917 YPO1917 int int 2169863 2171125 - integrase gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1917 YPO1918 YPO1918 YPO1918 2171665 2172405 - pili assembly chaperone gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1918 YPO1919 YPO1919 YPO1919 2172402 2173751 - hypothetical protein gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1919 YPO1920 YPO1920 YPO1920 2173767 2176358 - fimbrial usher protein gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1920 YPO1921 YPO1921 YPO1921 2176407 2177051 - pili assembly chaperone gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1921 YPO1922 YPO1922 YPO1922 2177144 2177674 - fimbrial protein gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1922 YPO1923 YPO1923 YPO1923 2178187 2181914 - gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1923 YPO1925 YPO1925 YPO1925 2182012 2182644 - two-component response regulator gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1925 YPO1926 YPO1926 YPO1926 2183470 2184792 - 4-hydroxybutyrate CoA-transferase gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1926 YPO1927 YPO1927 YPO1927 2184815 2185357 - transcription regulatory protein gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1927 YPO1928 YPO1928 YPO1928 2185407 2186249 - citrate lyase subunit beta gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1928 YPO1929 YPO1929 YPO1929 2186344 2187222 + LysR family transcriptional regulator gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1929 YPO1930 YPO1930 YPO1930 2187297 2187770 - lipoprotein gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1930 YPO1931 YPO1931 YPO1931 2187795 2188355 - hypothetical protein gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1931 YPO1932 YPO1932 YPO1932 2188575 2189804 - sugar transporter gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1932 YPO1933 YPO1933 YPO1933 2189870 2190739 - dicarboxylic acid hydrolase gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1933 YPO1934 YPO1934 YPO1934 2190851 2191813 + LysR family transcriptional regulator gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1934 YPO1935 YPO1935 YPO1935 2192118 2192717 - Na(+)-translocating NADH-quinone reductase subunit E Part of the NQR complex which has six subunits NqrA%2C NqrB%2C NqrC%2C NqrD%2C NqrE and NqrF. NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step%2C the conversion of ubisemiquinone to ubiquinol gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1935 YPO1936 YPO1936 YPO1936 2193069 2194229 + aminotransferase gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1936 YPO1937 YPO1937 ansP ansP 2194425 2195951 - L-asparagine permease gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1937 YPO1938 YPO1938 YPO1938 2196676 2197446 - deoR family transcriptional regulator gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1938 YPO1939 YPO1939 YPO1939 2198642 2199664 + glutaminase catalyzes the formation of glutamate from glutamine gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1939 YPO1940 YPO1940 YPO1940 2199775 2201415 + hypothetical protein gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1940 YPO1941 YPO1941 YPO1941 2201996 2203915 + hypothetical protein gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1941 YPO1942 YPO1942 YPO1942 2204119 2204646 + hypothetical protein gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1942 YPO1943 YPO1943 YPO1943 2204944 2206356 + hypothetical protein gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1943 YPO1944 YPO1944 YPO1944 2206359 2207651 + hypothetical protein gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1944 YPO1945 YPO1945 YPO1945 2207641 2208804 + hypothetical protein gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1945 YPO1946 YPO1946 YPO1946 2208808 2209521 + ABC transporter ATP-binding protein gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1946 YPO1947 YPO1947 YPO1947 2209511 2210008 + thioredoxin gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1947 YPO1948 YPO1948 YPO1948 2210008 2210319 + cytochrome gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1948 YPO1949 YPO1949 tehB tehB 2210492 2211379 + tellurite resistance protein TehB with TehA confers resistance to tellurite gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1949 YPO1950 YPO1950 YPO1950 2211520 2212737 + endopeptidase gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1950 YPO1951 YPO1951 hmsH hmsH 2213406 2215874 + hypothetical protein in Yersinia this protein is important for biofilm formation and hemin adsorption gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1951 YPO1952 YPO1952 hmsF hmsF 2215887 2217908 + outer membrane N-deacetylase in Yersinia this protein is involved in biofilm formation and hemin adsorption%3B related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1%2C6-N-acetyl-D-glucosamine (PGA) export gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1952 YPO1953 YPO1953 hmsR hmsR 2217898 2219232 + N-glycosyltransferase predicted polysaccharide polymerase involved in biofilm formation%3B in Escherichia coli the related protein PgaC is required for the synthesis of the beta-1%2C6-N-acetylglucosamine polysaccharide%3B in Yersinia the HmsR protein is an inner membrane protein gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1953 YPO1954 YPO1954 hmsS hmsS 2219229 2219696 + hemin storage system protein in Yersinia this gene is involved in biofilm formation and hemin adsorption gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1954 YPO1955 YPO1955 YPO1955 2220029 2220928 + acetyltransferase gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1955 YPO1956 YPO1956 YPO1956 2221367 2221645 + hypothetical protein gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1956 YPO1957 YPO1957 phoH phoH 2221705 2222493 + hypothetical protein gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1957 YPO1958 YPO1958 chaA chaA 2222596 2223696 - calcium/sodium:proton antiporter gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1958 YPO1959 YPO1959 narX narX 2224245 2226026 - nitrate/nitrite sensor protein NarX gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1959 YPO1960 YPO1960 YPO1960 2226336 2227757 + GntR family transcriptional regulator gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1960 YPO1962 YPO1962 argD argD 2228394 2229638 + bifunctional succinylornithine transaminase/acetylornithine transaminase catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate%3B also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1962 YPO1963 YPO1963 astA astA 2229668 2230720 + arginine succinyltransferase gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1963 YPO1964 YPO1964 astD astD 2230717 2232234 + succinylglutamic semialdehyde dehydrogenase a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity%3B converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1964 YPO1965 YPO1965 astB astB 2232258 2233601 + succinylarginine dihydrolase catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine%2C ammonia and carbon dioxide in arginine degradation gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1965 YPO1966 YPO1966 astE astE 2233662 2234654 + succinylglutamate desuccinylase catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1966 YPO1968 YPO1968 y1093 y1093 2236351 2237397 + transposase for insertion sequence IS100 gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1968 YPO1969 YPO1969 YPO1969 2237397 2238149 + transposase/IS protein y0016%3B y1054%3B ypmt1.02%3B ypmt1.57c%3B yppcp1.02 gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1969 YPO1971 YPO1971 hutG hutG 2238726 2239532 - N-formylglutamate amidohydrolase gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1971 YPO1972 YPO1972 hutI hutI 2239529 2240749 - imidazolonepropionase catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate%2C the third step in the histidine degradation pathway gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1972 YPO1973 YPO1973 hutC hutC 2240953 2241720 - GntR family transcriptional regulator gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1973 YPO1974 YPO1974 YPO1974 2241868 2243238 + N-formimino-L-glutamate deiminase catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1974 YPO1975 YPO1975 YPO1975 2243238 2243810 + hypothetical protein gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1975 YPO1976 YPO1976 YPO1976 2243988 2245964 - hypothetical protein gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1976 YPO1977 YPO1977 YPO1977 2246601 2247609 + gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1977 YPO1979 YPO1979 YPO1979 2247623 2248639 + dehydrogenase gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1979 YPO1980 YPO1980 YPO1980 2248632 2249438 + hypothetical protein gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1980 YPO1981 YPO1981 YPO1981 2249435 2250721 + coenzyme synthetase gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1981 YPO1982 YPO1982 YPO1982 2250855 2251817 + dehydrogenase gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1982 YPO1983 YPO1983 YPO1983 2251817 2252971 + glycosyl transferase gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1983 YPO1984 YPO1984 YPO1984 2252968 2253552 + hypothetical protein Doubtful CDS. No significant database hits gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1984 YPO1985 YPO1985 YPO1985 2253549 2254736 + glycosyl transferase gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1985 YPO1986 YPO1986 YPO1986 2254897 2255361 - hypothetical protein gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1986 YPO1987 YPO1987 YPO1987 2255531 2257189 - hypothetical protein No significant database hits gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1987 YPO1988 YPO1988 y1062 y1062 2257308 2258516 + transposase for the IS285 insertion element gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1988 YPO1989 YPO1989 YPO1989 2258636 2260798 - hypothetical protein gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1989 YPO1990 YPO1990 YPO1990 2261376 2263487 + hypothetical protein gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1990 YPO1991 YPO1991 YPO1991 2263734 2264372 + hypothetical protein gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1991 YPO1992 YPO1992 YPO1992 2264507 2265166 - hypothetical protein gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1992 YPO1993 YPO1993 YPO1993 2265271 2265951 - dehydrogenase gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1993 YPO1994 YPO1994 YPO1994 2266292 2267242 - hypothetical protein gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1994 YPO1995 YPO1995 YPO1995 2267229 2268161 - hypothetical protein gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1995 YPO1996 YPO1996 YPO1996 2268167 2269072 - hypothetical protein No significant database hits gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1996 YPO1997 YPO1997 YPO1997 2269863 2270936 - hypothetical protein gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1997 YPO1998 YPO1998 YPO1998 2271149 2271619 - hypothetical protein gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1998 YPO1999 YPO1999 YPO1999 2271674 2272096 - decarboxylase gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1999 YPO2000 YPO2000 YPO2000 2272373 2273764 - two-component system sensor protein gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2000 YPO2001 YPO2001 copR copR 2273770 2274462 - transcriptional activator gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2001 YPO2002 YPO2002 YPO2002 2274727 2275818 + hypothetical protein gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2002 YPO2003 YPO2003 YPO2003 2275967 2276674 + flavodoxin An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2003 YPO2004 YPO2004 YPO2004 2276689 2277384 + hypothetical protein gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2004 YPO2005 YPO2005 YPO2005 2277593 2278435 - hypothetical protein gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2005 YPO2006 YPO2006 YPO2006 2279186 2279722 + hypothetical protein No significant database hits gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2006 YPO2007 YPO2007 YPO2007 2279719 2280549 + esterase gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2007 YPO2008 YPO2008 YPO2008 2280557 2280955 + rhodanese-like protein gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2008 YPO2009 YPO2009 YPO2009 2281003 2281512 - integrase core domain-containing protein gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2009 YPO2009a YPO2009a YPO2009a 2281530 2281931 - gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2009a YPO2010 YPO2010 ychF ychF 2282141 2283232 - GTP-dependent nucleic acid-binding protein EngD translation-associated GTPase%3B the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3)%3B fluorescence spectroscopy revealed nucleic acid binding%3B the yeast protein YBR025c interacts with the translation elongation factor eEF1 gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2010 YPO2011 YPO2011 pth pth 2283396 2283986 - peptidyl-tRNA hydrolase Enables the recycling of peptidyl-tRNAs produced at termination of translation gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2011 YPO2012 YPO2012 YPO2012 2284348 2284620 + hypothetical protein YchH%3B transcription activated by CRP (cyclic AMP receptor protein)%2C a global transcription factor involved in regulation of metabolism in enteric bacteria%3B ychH presents a class II promoter to bind CRP%3B unknown function gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2012 YPO2013 YPO2013 prsA prsA 2284822 2285769 - ribose-phosphate pyrophosphokinase catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2013 YPO2014 YPO2014 ipk ipk 2286110 2287009 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2014 YPO2015 YPO2015 lolB lolB 2287011 2287634 - molecular chaperone LolB Incorporates lipoproteins in the outer membrane after they are released by the LolA protein gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2015 YPO2016 YPO2016 hemA hemA 2287940 2289202 + glutamyl-tRNA reductase catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH%3B the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid%3B functions in porphyrin (tetrapyrroles) biosynthesis%3B the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2016 YPO2017 YPO2017 prfA prfA 2289235 2290317 + peptide chain release factor 1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1%3B this protein is similar to release factor 2 gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2017 YPO2018 YPO2018 YPO2018 2290317 2291147 + N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase HemK%3B PrmC%3B transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2018 YPO2019 YPO2019 YPO2019 2291211 2291612 + hypothetical protein gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2019 YPO2020 YPO2020 YPO2020 2291609 2292418 + transcriptional regulator gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2020 YPO2021 YPO2021 kdsA kdsA 2292514 2293368 + 2-dehydro-3-deoxyphosphooctonate aldolase catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2021 YPO2023 YPO2023 tnp tnp 2293850 2294308 + transposase for the IS1541 insertion element gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2023 YPO2025 YPO2025 YPO2025 2294928 2295710 - transposase/IS protein ypmt1.57c gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2025 YPO2026 YPO2026 y1093 y1093 2295707 2296729 - transposase for insertion sequence IS100 gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2026 YPO2028 YPO2028 YPO2028 2299155 2300030 - hypothetical protein gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2028 YPO2029 YPO2029 YPO2029 2300331 2301413 - hypothetical protein gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2029 YPO2030 YPO2030 YPO2030 2301433 2302269 - binding-protein-dependent transporter membrane protein gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2030 YPO2031 YPO2031 YPO2031 2302266 2303132 - binding-protein-dependent transporter membrane protein gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2031 YPO2033 YPO2033 tnp tnp 2304034 2304492 + transposase for the IS1541 insertion element gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2033 YPO2034 YPO2034 YPO2034 2303141 2304921 - gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2034 YPO2035 YPO2035 YPO2035 2305121 2305951 + hypothetical protein gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2035 YPO2036 YPO2036 YPO2036 2305965 2307077 + transcriptional regulator gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2036 YPO2037 YPO2037 YPO2037 2307712 2308449 + hydrolase gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2037 YPO2038 YPO2038 YPO2038 2308486 2309046 + hypothetical protein gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2038 YPO2039 YPO2039 YPO2039 2309500 2310063 - hypothetical protein gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2039 YPO2040 YPO2040 YPO2040 2310458 2311663 - multidrug resistance protein MdtH Confers resistance to norfloxacin and enoxacin gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2040 YPO2041 YPO2041 rimJ rimJ 2311957 2312541 + ribosomal-protein-S5-alanine N-acetyltransferase gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2041 YPO2042 YPO2042 YPO2042 2312549 2314159 + oxidoreductase gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2042 YPO2043 YPO2043 mviN mviN 2314426 2315961 + hypothetical protein gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2043 YPO2044 YPO2044 YPO2044 2316429 2318102 + hemolysin activator protein gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2044 YPO2045 YPO2045 YPO2045 2318132 2322862 + hemolysin gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2045 YPO2046 YPO2046 argS argS 2323093 2324823 - arginyl-tRNA synthetase catalyzes a two-step reaction%2C first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class-I aminoacyl-tRNA synthetase gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2046 YPO2047 YPO2047 YPO2047 2325446 2326021 + hypothetical protein gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2047 YPO2048 YPO2048 cutC cutC 2326253 2327017 + copper homeostasis protein CutC gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2048 YPO2049 YPO2049 YPO2049 2327210 2328181 - hypothetical protein gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2049 YPO2050 YPO2050 YPO2050 2328178 2328981 - hypothetical protein gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2050 YPO2051 YPO2051 YPO2051 2329172 2329567 - hypothetical protein gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2051 YPO2052 YPO2052 YPO2052 2329747 2330562 - hypothetical protein gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2052 YPO2053 YPO2053 aspS aspS 2331620 2333416 + aspartyl-tRNA synthetase catalyzes a two-step reaction%2C first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B contains discriminating and non-discriminating subtypes gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2053 YPO2054 YPO2054 ntpA ntpA 2333416 2333859 + dATP pyrophosphohydrolase converts dATP to dAMP and pyrophosphate gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2054 YPO2055 YPO2055 YPO2055 2333917 2334660 + hypothetical protein gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2055 YPO2056 YPO2056 ruvC ruvC 2334869 2335390 + Holliday junction resolvase endonuclease%3B resolves Holliday structures%3B forms a complex of RuvABC%3B the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration%3B RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2056 YPO2057 YPO2057 ruvA ruvA 2335673 2336287 + Holliday junction DNA helicase RuvA plays an essential role in ATP-dependent branch migration of the Holliday junction gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2057 YPO2058 YPO2058 ruvB ruvB 2336449 2337453 + Holliday junction DNA helicase RuvB promotes strand exchange during homologous recombination%3B RuvAB complex promotes branch migration%3B RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences%3B forms hexameric rings around opposite DNA arms%3B requires ATP for branch migration and orientation of RuvAB complex determines direction of migration gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2058 YPO2059 YPO2059 znuB znuB 2337508 2338293 - high-affinity zinc transporter membrane protein involved in transport of zinc(II) with ZnuA and C gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2059 YPO2060 YPO2060 znuC znuC 2338290 2339048 - high-affinity zinc transporter ATPase involved in transport of zinc(II) with ZnuA and C gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2060 YPO2061 YPO2061 znuA znuA 2339124 2340080 + high-affinity zinc transporter substrate-binding protein involved in transport of zinc(II) with ZnuA and C gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2061 YPO2062 YPO2062 YPO2062 2340101 2341417 + hypothetical protein gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2062 YPO2063 YPO2063 msbB msbB 2341684 2342646 + lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase Transfers myristate or laurate%2C activated on ACP%2C to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2063 YPO2064 YPO2064 pykA pykA 2342991 2344433 - pyruvate kinase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2064 YPO2065 YPO2065 hexR hexR 2344763 2345632 - DNA-binding transcriptional regulator HexR Represses the expression of the zwf%2C eda%2C glp and gap gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2065 YPO2066 YPO2066 zwf zwf 2345994 2347469 + glucose-6-phosphate 1-dehydrogenase catalyzes the formation of D-glucono-1%2C5-lactone 6-phosphate from D-glucose 6-phosphate gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2066 YPO2067 YPO2067 eda eda 2347711 2348352 + keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate%3B or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2067 YPO2068 YPO2068 YPO2068 2349046 2349510 + hypothetical protein gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2068 YPO2069 YPO2069 YPO2069 2349530 2349826 + multidrug efflux system protein MdtI with MdtJ is involved in resistance to deoxycholate%2C nalidixic acid%2C fosfomycin%2C and SDS gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2069 YPO2070 YPO2070 YPO2070 2349958 2350302 - hypothetical protein gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2070 YPO2071 YPO2071 YPO2071 2350433 2352337 + DEAD box family helicase gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2071 YPO2072 YPO2072 YPO2072 2352409 2353107 + hypothetical protein gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2072 YPO2073 YPO2073 YPO2073 2353262 2353849 + lipoprotein gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2073 YPO2074 YPO2074 fadD fadD 2354492 2356180 + long-chain-fatty-acid--CoA ligase Activates fatty acids by binding to coenzyme A gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2074 YPO2075 YPO2075 rnd rnd 2356340 2357461 + ribonuclease D gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2075 YPO2076 YPO2076 minE minE 2357698 2357967 - cell division topological specificity factor MinE works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2076 YPO2077 YPO2077 minD minD 2357971 2358783 - cell division inhibitor MinD ATPase%3B with MinC inhibits cell division by blocking formation of the polar Z ring septums gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2077 YPO2078 YPO2078 minC minC 2358808 2359494 - septum formation inhibitor blocks the formation of polar Z-ring septums gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2078 YPO2080 YPO2080 YPO2080 2360215 2360487 + hypothetical protein gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2080 YPO2081 YPO2081 YPO2081 2360628 2361713 + lipoprotein gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2081 YPO2082 YPO2082 YPO2082 2361784 2362440 + hypothetical protein gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2082 YPO2083 YPO2083 YPO2083 2362543 2362989 + hypothetical protein gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2083 YPO2085 YPO2085 y1093 y1093 2364324 2365346 + transposase for insertion sequence IS100 gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2085 YPO2086 YPO2086 YPO2086 2365343 2366125 + transposase/IS protein ypmt1.57c gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2086 YPO2087 YPO2087 YPO2087 2366293 2366553 - phage excisionase gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2087 YPO2088 YPO2088 YPO2088 2366853 2367497 - methyltransferase gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2088 YPO2089 YPO2089 ninB ninB 2367596 2368024 + hypothetical protein gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2089 YPO2090 YPO2090 YPO2090 2368098 2368703 + hypothetical protein gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2090 YPO2091 YPO2091 YPO2091 2368704 2369093 + phage antitermination protein gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2091 YPO2093 YPO2093 YPO2093 2369364 2369927 + hypothetical protein gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2093 YPO2095 YPO2095 YPO2095 2370351 2370560 + hypothetical protein gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2095 YPO2096 YPO2096 YPO2096 2370557 2370832 - hypothetical protein gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2096 YPO2098 YPO2098 YPO2098 2371306 2371818 + phage lysozyme gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2098 YPO2099 YPO2099 rzpR rzpR 2371803 2372261 + prophage endopeptidase gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2099 YPO2100 YPO2100 YPO2100 2372723 2373520 + phage regulatory protein gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2100 YPO2101 YPO2101 YPO2101 2373977 2374612 + hypothetical protein gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2101 YPO2102 YPO2102 YPO2102 2374643 2375092 + hypothetical protein gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2102 YPO2104 YPO2104 y1062 y1062 2375728 2376936 + transposase for the IS285 insertion element gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2104 YPO2104a YPO2104a YPO2104a 2376941 2377915 + hypothetical protein gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2104a YPO2106 YPO2106 YPO2106 2377915 2379300 + gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2106 YPO2108 YPO2108 YPO2108 2379304 2380416 + hypothetical protein gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2108 YPO2109 YPO2109 YPO2109 2380538 2381311 + hypothetical protein gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2109 YPO2110 YPO2110 YPO2110 2381325 2382530 + hypothetical protein gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2110 YPO2111 YPO2111 YPO2111 2382530 2383060 + hypothetical protein gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2111 YPO2112 YPO2112 YPO2112 2383057 2383311 + hypothetical protein gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2112 YPO2113 YPO2113 YPO2113 2383313 2383663 + hypothetical protein gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2113 YPO2114 YPO2114 YPO2114 2383665 2384249 + hypothetical protein gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2114 YPO2115 YPO2115 YPO2115 2384246 2384653 + hypothetical protein gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2115 YPO2116 YPO2116 YPO2116 2384719 2385639 + hypothetical protein gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2116 YPO2117 YPO2117 YPO2117 2385652 2385963 + hypothetical protein gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2117 YPO2118 YPO2118 YPO2118 2386050 2386271 + hypothetical protein gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2118 YPO2119 YPO2119 YPO2119 2386272 2389775 + phage tail protein gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2119 YPO2120 YPO2120 YPO2120 2389778 2390119 + hypothetical protein gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2120 YPO2121 YPO2121 tnp tnp 2390424 2390882 + transposase for the IS1541 insertion element gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2121 YPO2122 YPO2122 YPO2122 2391003 2391755 + hypothetical protein gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2122 YPO2123 YPO2123 YPO2123 2391758 2392468 + phage minor tail protein gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2123 YPO2124 YPO2124 YPO2124 2392729 2393361 + hypothetical protein gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2124 YPO2126 YPO2126 YPO2126 2394149 2395243 + hypothetical protein gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2126 YPO2127 YPO2127 YPO2127 2395342 2395893 + phage-like membrane protein gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2127 YPO2128 YPO2128 YPO2128 2395901 2396251 + phage-like lipoprotein gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2128 YPO2129 YPO2129 YPO2129 2396307 2396927 + phage tail assembly protein gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2129 YPO2131 YPO2131 YPO2131 2397499 2400702 + phage host specificity protein gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2131 YPO2132 YPO2132 YPO2132 2400702 2401700 + hypothetical protein gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2132 YPO2133 YPO2133 YPO2133 2401717 2402634 + hypothetical protein gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2133 YPO2134 YPO2134 YPO2134 2402645 2403064 + phage tail fiber assembly protein gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2134 YPO2135 YPO2135 YPO2135 2403061 2403216 + hypothetical protein gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2135 YPO2136 YPO2136 y1062 y1062 2403285 2404493 - transposase for the IS285 insertion element gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2136 YPO2137 YPO2137 YPO2137 2404798 2405970 - hypothetical protein gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2137 YPO2138 YPO2138 YPO2138 2405974 2407173 - aminotransferase gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2138 YPO2139 YPO2139 YPO2139 2407190 2407930 - hypothetical protein gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2139 YPO2140 YPO2140 YPO2140 2409022 2409378 + hypothetical protein gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2140 YPO2141 YPO2141 dsbB dsbB 2409795 2410325 - disulfide bond formation protein B disulfide oxidoreductase%3B integral membrane protein%3B required for perioplasmic disulfide bond formation%3B oxidizes DsbA protein gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2141 YPO2142 YPO2142 nhaB nhaB 2410561 2412135 - sodium/proton antiporter involved in regulation of intracellular pH under alkaline conditions gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2142 YPO2144 YPO2144 fadR fadR 2412379 2413098 + fatty acid metabolism regulator Multifunctional regulator of fatty acid metabolism gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2144 YPO2145 YPO2145 YPO2145 2413316 2414851 - SpoVR family protein gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2145 YPO2147 YPO2147 dadA dadA 2415316 2416620 + D-amino acid dehydrogenase small subunit catalyzes the oxidative deamination of D-amino acids gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2147 YPO2148 YPO2148 YPO2148 2416636 2417838 - multidrug resistance protein gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2148 YPO2149 YPO2149 YPO2149 2418103 2418972 - hypothetical protein gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2149 YPO2150 YPO2150 YPO2150 2419170 2420075 + LysR family transcriptional regulator gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2150 YPO2151 YPO2151 YPO2151 2420110 2421231 - hypothetical protein gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2151 YPO2152 YPO2152 YPO2152 2421336 2422610 - hypothetical protein gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2152 YPO2153 YPO2153 YPO2153 2422760 2424694 - hypothetical protein gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2153 YPO2155 YPO2155 YPO2155 2425117 2425887 + hypothetical protein gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2155 YPO2156 YPO2156 YPO2156 2425960 2426835 - hypothetical protein gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2156 YPO2157 YPO2157 gapA gapA 2427149 2428153 - glyceraldehyde 3-phosphate dehydrogenase A gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2157 YPO2158 YPO2158 YPO2158 2428492 2428905 + methionine sulfoxide reductase B this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form%3B provides protection against oxidative stress gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2158 YPO2159 YPO2159 YPO2159 2428976 2429248 + hypothetical protein gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2159 YPO2160 YPO2160 pncA pncA 2429382 2430029 - nicotinamidase/pyrazinamidase catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2160 YPO2161 YPO2161 ansA ansA 2430044 2431060 - cytoplasmic asparaginase I converts asparagine to aspartate and ammonia gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2161 YPO2162 YPO2162 sppA sppA 2431177 2433027 - protease 4 SppA%3B catalyzes the degradation of cleaved signal peptides%3B essential to maintain secretion of mature proteins across the membrane gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2162 YPO2163 YPO2163 YPO2163 2433190 2433741 + hypothetical protein gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2163 YPO2164 YPO2164 selD selD 2433966 2435012 + selenophosphate synthetase catalyzes the formation of selenophosphate from selenide and ATP gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2164 YPO2165 YPO2165 topB topB 2435071 2436999 + DNA topoisomerase III decatenates replicating daughter chromosomes gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2165 YPO2166 YPO2166 YPO2166 2436996 2437286 + hypothetical protein gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2166 YPO2167 YPO2167 nudG nudG 2437299 2437685 - pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2167 YPO2168 YPO2168 xthA xthA 2437783 2438589 - exonuclease III removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2168 YPO2169 YPO2169 YPO2169 2439399 2440259 + LysR family transcriptional regulator gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2169 YPO2170 YPO2170 y1062 y1062 2441131 2442339 + transposase for the IS285 insertion element gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2170 YPO2171 YPO2171 YPO2171 2442302 2443171 - formyltetrahydrofolate deformylase gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2171 YPO2172 YPO2172 YPO2172 2443255 2443719 - hypothetical protein gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2172 YPO2173 YPO2173 YPO2173 2445053 2446069 + response regulator of RpoS gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2173 YPO2174 YPO2174 YPO2174 2446376 2447722 + nucleotide sugar dehydrogenase gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2174 YPO2175 YPO2175 hns hns 2448157 2448555 - global DNA-binding transcriptional dual regulator H-NS gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2175 YPO2176 YPO2176 tdk tdk 2449305 2449895 + thymidine kinase catalyzes the formation of thymidine 5'-phosphate from thymidine gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2176 YPO2177 YPO2177 YPO2177 2450264 2451046 - transposase/IS protein ypmt1.57c gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2177 YPO2178 YPO2178 y1093 y1093 2451043 2452065 - transposase for insertion sequence IS100 gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2178 YPO2180 YPO2180 adhE adhE 2452605 2455280 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2180 YPO2181 YPO2181 YPO2181 2456087 2456731 + hypothetical protein gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2181 YPO2182 YPO2182 oppA oppA 2457569 2459206 + periplasmic oligopeptide-binding protein gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2182 YPO2183 YPO2183 oppB oppB 2459293 2460213 + oligopeptide transporter permease gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2183 YPO2184 YPO2184 oppC oppC 2460232 2461137 + oligopeptide transport system permease gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2184 YPO2185 YPO2185 oppD oppD 2461149 2462150 + oligopeptide transporter ATP-binding component gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2185 YPO2186 YPO2186 oppF oppF 2462147 2463148 + oligopeptide transport ATP-binding protein gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2186 YPO2186a YPO2186a YPO2186a 2463709 2463924 + hypothetical protein gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2186a YPO2187 YPO2187 YPO2187 2464223 2464546 - dsDNA-mimic protein highly acidic protein%3B the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi)%3B binds heat-unstable protein (HU-alpha) which is a histone-like protein gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2187 YPO2188 YPO2188 cls cls 2464711 2466171 - cardiolipin synthetase catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2188 YPO2189 YPO2189 YPO2189 2466240 2466488 - hypothetical protein No significant database matches. Similar to CDS YPO2920 (8s aa) E(): 2.5e-23%2C 95.1%25 identity in 61 aa overlap gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2189 YPO2190 YPO2190 ail ail 2467211 2467750 + attachment invasion locus protein gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2190 YPO2191 YPO2191 YPO2191 2467971 2468234 + hypothetical protein No significant database hits gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2191 YPO2192 YPO2192 YPO2192 2468818 2469114 - hypothetical protein unknown function%3B YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase%2C but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2192 YPO2193 YPO2193 tonB tonB 2469415 2470173 + transport protein TonB membrane spanning protein in TonB-ExbB-ExbD complex%3B transduces proton motive force of the cytoplasmic membrane to outer membrane transporters%3B involved in the transport of ron-siderophore complexes%2C vitamin B12 and colicins gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2193 YPO2194 YPO2194 y1062 y1062 2470209 2471417 - transposase for the IS285 insertion element gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2194 YPO2195 YPO2195 YPO2195 2471565 2472014 - acyl-CoA thioester hydrolase YciA%3B hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA%3B member of the the acyl coenzyme A hydrolase family of proteins gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2195 YPO2196 YPO2196 ispZ ispZ 2472094 2472636 - intracellular septation protein A Involved in cell division%3B probably involved in intracellular septation gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2196 YPO2197 YPO2197 YPO2197 2472867 2474601 + gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2197 YPO2199 YPO2199 YPO2199 2474722 2475492 - hypothetical protein gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2199 YPO2200 YPO2200 YPO2200 2475654 2475869 + hypothetical protein No significant database hits gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2200 YPO2201 YPO2201 ompW ompW 2475978 2476613 + outer membrane protein W receptor for colicin S4 gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2201 YPO2202 YPO2202 YPO2202 2476760 2477074 - lipoprotein gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2202 YPO2203 YPO2203 trpA trpA 2477417 2478223 - tryptophan synthase subunit alpha catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2203 YPO2204 YPO2204 trpB trpB 2478223 2479413 - tryptophan synthase subunit beta catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2204 YPO2205 YPO2205 trpC trpC 2479570 2480997 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase monomeric bifunctional protein%3B functions in tryptophan biosynthesis pathway%3B phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2205 YPO2206 YPO2206 trpD trpD 2481001 2481999 - anthranilate phosphoribosyltransferase Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2206 YPO2207 YPO2207 trpG trpG 2482014 2482592 - anthranilate synthase component II TrpG%3B with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine%3B TrpG provides the glutamine amidotransferase activity gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2207 YPO2208 YPO2208 trpE trpE 2482592 2484157 - anthranilate synthase component I with component II%2C the glutamine amidotransferase%2C catalyzes the formation of anthranilate from chorismate and glutamine gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2208 YPO2209 YPO2209 YPO2209 2484273 2484335 - trp operon leader peptide trp operon leader peptide gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2209 YPO2210 YPO2210 YPO2210 2484364 2484492 - hypothetical protein No significant database hits gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2210 YPO2211 YPO2211 trpH trpH 2484609 2485508 + hypothetical protein gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2211 YPO2212 YPO2212 YPO2212 2485525 2486145 + hypothetical protein gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2212 YPO2213 YPO2213 YPO2213 2486492 2487526 + 23S rRNA pseudouridylate synthase B catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2213 YPO2214 YPO2214 btuR btuR 2487649 2488239 - cob(I)yrinic acid a%2Cc-diamide adenosyltransferase catalyzes the formation of adenosylcob(III)yrinic acid a%2Cc-diamide from cob(I)yrinic acid a%2Cc-diamide gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2214 YPO2215 YPO2215 YPO2215 2488256 2489017 - short chain dehydrogenase gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2215 YPO2216 YPO2216 sohB sohB 2489189 2490235 + periplasmic protease SohB%3B periplasmic protein%3B member of the peptidase S49 family gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2216 YPO2217 YPO2217 YPO2217 2490354 2490605 - hypothetical protein gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2217 YPO2217a YPO2217a YPO2217a 2490623 2490997 + hypothetical protein Doubtful CDS. No significant database hits gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2217a YPO2218 YPO2218 topA topA 2491024 2493639 + DNA topoisomerase I catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining%2C maintains net negative superhelicity gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2218 YPO2219 YPO2219 cysB cysB 2494036 2495010 + transcriptional regulator CysB LysR-type transcriptional regulator%3B contains helix-turn-helix (HTH) motif%3B in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon%3B autoregulates expression%3B crystal structure of Klebsiella aerogenes showed tetramer formation gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2219 YPO2220 YPO2220 YPO2220 2495346 2496203 + hypothetical protein No significant database hits gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2220 YPO2221 YPO2221 acnA acnA 2496567 2499239 + aconitate hydratase Catalyzes the conversion of citrate to isocitrate gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2221 YPO2222 YPO2222 ribA ribA 2499403 2499993 - GTP cyclohydrolase II catalyzes the conversion of GTP to formate and 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2222 YPO2223 YPO2223 pgpB pgpB 2500499 2501260 + phosphatidylglycerophosphatase B gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2223 YPO2224 YPO2224 YPO2224 2501429 2501740 + hypothetical protein gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2224 YPO2225 YPO2225 YPO2225 2501747 2502916 + hypothetical protein gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2225 YPO2226 YPO2226 YPO2226 2503038 2503340 - hypothetical protein No significant database hits gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2226 YPO2227 YPO2227 pyrF pyrF 2503807 2504544 + orotidine 5'-phosphate decarboxylase type 1 subfamily%3B involved in last step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate to UMP and carbon dioxide%3B OMP decarboxylase%3B OMPDCase%3B OMPdecase gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2227 YPO2228 YPO2228 YPO2228 2504544 2504870 + translation initiation factor Sui1 involved in start site selection during the initiation of translation gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2228 YPO2229 YPO2229 osmB osmB 2505108 2505323 - lipoprotein gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2229 YPO2230 YPO2230 araD araD 2505803 2506498 + L-ribulose-5-phosphate 4-epimerase catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2230 YPO2231 YPO2231 YPO2231 2506527 2506775 - hypothetical protein No significant database hits gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2231 YPO2232 YPO2232 mipB mipB 2507109 2507774 + fructose-6-phosphate aldolase similar to transaldolase from Escherichia coli%3B many organisms have multiple copies gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2232 YPO2233 YPO2233 YPO2233 2507891 2508196 - hypothetical protein gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2233 YPO2234 YPO2234 cstA cstA 2508189 2510255 - carbon starvation protein A gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2234 YPO2235 YPO2235 rnb rnb 2510605 2512539 - exoribonuclease II Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2235 YPO2237 YPO2237 YPO2237 2513188 2514498 + hypothetical protein gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2237 YPO2238 YPO2238 YPO2238 2514533 2515534 + hypothetical protein gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2238 YPO2239 YPO2239 nth nth 2515717 2516358 - endonuclease III DNA-(apurinic or apyrimidinic site) lyase%3B has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity%3B removed damaged DNA at cytosines%2C thymines and guanines gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2239 YPO2240 YPO2240 YPO2240 2516355 2517056 - electron transport complex RsxE subunit in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents%3B similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2240 YPO2241 YPO2241 YPO2241 2517053 2517682 - electron transport complex protein RnfG part of membrane-bound complex hought to be involved in electron transport to nitrogen gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2241 YPO2242 YPO2242 rnfD rnfD 2517692 2518747 - electron transport complex protein RnfD RnfD%3B RsxD%3B required for nitrogen fixation in Rhodobacter capsulatus%3B part of a membrane-bound complex thought to be involved in electron transport to nitrogenase%3B in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2242 YPO2243 YPO2243 YPO2243 2519275 2520168 + AraC family transcriptional regulator gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2243 YPO2244 YPO2244 YPO2244 2520273 2522135 - electron transport complex protein RnfC part of membrane-bound complex thought to be involved in electron transport to nitrogen gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2244 YPO2245 YPO2245 YPO2245 2522185 2522751 - electron transport complex protein RnfB part of membrane-bound complex thought to be involved in electron transport to nitrogen gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2245 YPO2246 YPO2246 YPO2246 2522751 2523332 - Na(+)-translocating NADH-quinone reductase subunit E gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2246 YPO2247 YPO2247 YPO2247 2523460 2523903 - hypothetical protein gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2247 YPO2249 YPO2249 YPO2249 2524378 2526436 + gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2249 YPO2250 YPO2250 YPO2250 2526461 2527830 + gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2250 YPO2252 YPO2252 YPO2252 2527832 2529970 + toxin transport protein gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2252 YPO2253 YPO2253 araA araA 2530160 2531662 - L-arabinose isomerase catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2253 YPO2254 YPO2254 araB araB 2531746 2533449 - ribulokinase catalyzes the phosphorylation of ribulose to ribulose 5-phosphate gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2254 YPO2255 YPO2255 araF araF 2533857 2534840 + L-arabinose-binding protein gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2255 YPO2256 YPO2256 araG araG 2534938 2536509 + L-arabinose transporter ATP-binding protein Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2256 YPO2257 YPO2257 araH araH 2536527 2537576 + L-arabinose transporter permease Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2257 YPO2258 YPO2258 araC araC 2537797 2538729 + DNA-binding transcriptional regulator AraC positive and negative regulator%3B regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2258 YPO2259 YPO2259 YPO2259 2538857 2539906 + oxidoreductase gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2259 YPO2260 YPO2260 YPO2260 2540100 2541128 + hypothetical protein gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2260 YPO2261 YPO2261 YPO2261 2541334 2541933 + hypothetical protein No significant database hits gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2261 YPO2262 YPO2262 YPO2262 2541982 2543526 - hypothetical protein gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2262 YPO2263 YPO2263 manA manA 2543766 2544941 - mannose-6-phosphate isomerase gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2263 YPO2263a YPO2263a YPO2263a 2545225 2546622 + fumarate hydratase gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2263a YPO2265 YPO2265 tus tus 2546702 2547637 - DNA replication terminus site-binding protein binds to DNA replication terminator sequences to prevent passage of replication forks gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2265 YPO2266 YPO2266 YPO2266 2548022 2549140 - hypothetical protein gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2266 YPO2267 YPO2267 YPO2267 2549353 2550236 + gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2267 YPO2268 YPO2268 mlc mlc 2550453 2551670 + ROK family transcriptional regulator gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2268 YPO2269 YPO2269 bioD bioD 2551894 2552562 + dithiobiotin synthetase DTB synthetase%3B dethiobiotin synthase%3B involved in production of dethiobiotin from ATP and 7%2C8-diaminononanoate and carbon dioxide%3B contains magnesium gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2269 YPO2270 YPO2270 YPO2270 2552703 2553947 - voltage-gated ClC-type chloride channel ClcB gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2270 YPO2271 YPO2271 YPO2271 2554373 2554636 - hypothetical protein gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2271 YPO2272 YPO2272 YPO2272 2554658 2555065 - hypothetical protein gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2272 YPO2273 YPO2273 YPO2273 2555162 2555584 - hypothetical protein gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2273 YPO2274 YPO2274 YPO2274 2555780 2556832 + hypothetical protein gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2274 YPO2275 YPO2275 YPO2275 2556844 2557161 + hypothetical protein gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2275 YPO2276 YPO2276 YPO2276 2557164 2557415 + phage-like membrane protein gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2276 YPO2276a YPO2276a YPO2276a 2557412 2557684 + phage-like membrane protein gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2276a YPO2277 YPO2277 YPO2277 2557749 2559461 + hypothetical protein gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2277 YPO2278 YPO2278 YPO2278 2559474 2559761 + phage-like membrane protein gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2278 YPO2279 YPO2279 YPO2279 2559765 2560790 + phage-like membrane protein gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2279 YPO2280 YPO2280 YPO2280 2560790 2562034 + phage-like secreted protein gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2280 YPO2282 YPO2282 YPO2282 2563093 2563203 - hypothetical protein No significant database hits gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2282 YPO2283 YPO2283 YPO2283 2563325 2564341 - LacI family transcriptional regulator gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2283 YPO2284 YPO2284 YPO2284 2564405 2564878 - hypothetical protein No significant database hits gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2284 YPO2286 YPO2286 YPO2286 2565808 2566839 + hypothetical protein gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2286 YPO2287 YPO2287 YPO2287 2566843 2567664 + transport system permease gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2287 YPO2288 YPO2288 amn amn 2567955 2569595 - AMP nucleosidase Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2288 YPO2289 YPO2289 YPO2289 2569831 2571234 + virulence factor gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2289 YPO2290 YPO2290 YPO2290 2571239 2574310 + virulence factor gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2290 YPO2291 YPO2291 YPO2291 2574307 2576847 + virulence factor gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2291 YPO2292 YPO2292 YPO2292 2577016 2577810 - lipoprotein gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2292 YPO2293 YPO2293 ilvB ilvB 2578383 2580065 + acetolactate synthase catalytic subunit gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2293 YPO2294 YPO2294 ilvN ilvN 2580067 2580369 + acetolactate synthase 1 regulatory subunit with IlvB catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase small subunit gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2294 YPO2295 YPO2295 YPO2295 2580436 2581110 - nucleotidase manganese-dependent 5'-nucleotidase%3B specific for 5'-UMP%2C 5'-dUMP%2C and 5'-dTMP%3B member of haloacid dehalogenase (HAD)-like hydrolase superfamily gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2295 YPO2296 YPO2296 YPO2296 2581241 2583636 - gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2296 YPO2298 YPO2298 phoA phoA 2584182 2585627 - alkaline phosphatase gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2298 YPO2299 YPO2299 ogt ogt 2585868 2586386 + methylated-DNA--protein-cysteine methyltransferase gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2299 YPO2300 YPO2300 fnr fnr 2586459 2587211 + fumarate/nitrate reduction transcriptional regulator Global transcription factor that controls the expression of over 100 target genes in response to anoxia gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2300 YPO2301 YPO2301 YPO2301 2587346 2588302 + universal stress protein UspE with UspC and UspD is involved in resistance to UV irradiation gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2301 YPO2302 YPO2302 pntB pntB 2588577 2589971 - pyridine nucleotide transhydrogenase catalyzes reversible transfer of hydride ion equivalent between NAD and NADP%3B membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane%3B forms a tetramer composed of two alpha and 2 beta subunits%3B AB-stereospecific enzyme gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2302 YPO2303 YPO2303 pntA pntA 2590044 2591570 - NAD(P) transhydrogenase subunit alpha forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane%3B involved in catalyzing transfer of hydride ion equivalents between NAD and NADP%3B stereospecific (AB-specific)%3B functions as a proton pump by translocating protons from cytoplasm to periplasm gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2303 YPO2304 YPO2304 YPO2304 2591691 2591894 - hypothetical protein No significant database hits gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2304 YPO2305 YPO2305 YPO2305 2592100 2593053 + hypothetical protein gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2305 YPO2306 YPO2306 YPO2306 2593323 2594714 + amino acid antiporter gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2306 YPO2307 YPO2307 YPO2307 2594738 2595154 - hypothetical protein gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2307 YPO2308 YPO2308 rstA rstA 2595451 2596197 + DNA-binding transcriptional regulator RstA response regulator in two-component regulatory system with RstB gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2308 YPO2309 YPO2309 rstB rstB 2596225 2597502 + sensor protein RstB gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2309 YPO2310 YPO2310 YPO2310 2597596 2599095 + carboxypeptidase gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2310 YPO2311 YPO2311 tnp tnp 2599217 2599675 - transposase for the IS1541 insertion element gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2311 YPO2312 YPO2312 YPO2312 2600645 2603269 + insecticidal toxin complex gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2312 YPO2313 YPO2313 YPO2313 2603272 2603628 + hypothetical protein No significant database hits gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2313 YPO2315 YPO2315 YPO2315 2604455 2605033 - hypothetical protein gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2315 YPO2316 YPO2316 YPO2316 2605059 2605613 - hypothetical protein gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2316 YPO2317 YPO2317 YPO2317 2606008 2606220 + hypothetical protein No significant database hits. Doubtful CDS gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2317 YPO2318 YPO2318 asr asr 2606217 2606501 + acid shock protein gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2318 YPO2319 YPO2319 YPO2319 2606835 2607671 + pepetidase gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2319 YPO2320 YPO2320 YPO2320 2607727 2608050 - DNA-binding phage-related protein gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2320 YPO2321 YPO2321 YPO2321 2608047 2608361 - hypothetical protein gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2321 YPO2322 YPO2322 hrpA hrpA 2608715 2612557 - ATP-dependent RNA helicase HrpA involved in the post-transcriptional processing of the daa operon mRNA%2C which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2322 YPO2323 YPO2323 acpD acpD 2613025 2613630 + azoreductase FMN-dependent%3B requires NADH%3B catalyzes the cleavage of azo bond in aromatic azo compounds gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2323 YPO2324 YPO2324 YPO2324 2613751 2614707 - transcriptional regulator gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2324 YPO2325 YPO2325 dalD dalD 2614917 2616308 + mannitol dehydrogenase gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2325 YPO2326 YPO2326 YPO2326 2616509 2616880 - hypothetical protein gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2326 YPO2327 YPO2327 YPO2327 2616890 2617075 - lipoprotein gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2327 YPO2328 YPO2328 YPO2328 2617081 2619777 - hypothetical protein gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2328 YPO2329 YPO2329 hslI hslI 2620043 2621035 + D-lactate dehydrogenase gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2329 YPO2330 YPO2330 hslJ hslJ 2621105 2621557 + heat-inducible protein gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2330 YPO2331 YPO2331 YPO2331 2621615 2621956 - lipoprotein gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2331 YPO2332 YPO2332 YPO2332 2622241 2622900 + Mg(2+) transport ATPase inner membrane protein involved in cell density-dependent acid resistance%3B part of the acid fitness island (AFI) of E. coli gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2332 YPO2333 YPO2333 qacE qacE 2622960 2623298 - quaternary ammonium compound-resistance protein gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2333 YPO2334 YPO2334 nifJ nifJ 2623771 2627304 + pyruvate-flavodoxin oxidoreductase gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2334 YPO2335 YPO2335 YPO2335 2627579 2628520 + C32 tRNA thiolase TtcA%3B YdaO%3B catalyzes the thiolation of cytosine 32 in specific tRNAs gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2335 YPO2336 YPO2336 YPO2336 2628791 2629795 + hypothetical protein gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2336 YPO2337 YPO2337 YPO2337 2630107 2630946 + regulatory protein gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2337 YPO2338 YPO2338 zntB zntB 2631320 2632303 - zinc transporter gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2338 YPO2339 YPO2339 mppA mppA 2632546 2634162 - periplasmic murein peptide-binding protein gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2339 YPO2340 YPO2340 YPO2340 2634540 2635310 + murein peptide amidase A gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2340 YPO2341 YPO2341 YPO2341 2635352 2636326 - mandelate racemase gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2341 YPO2342 YPO2342 tpx tpx 2636489 2636992 + thiol peroxidase antioxidant activity%3B thioredoxin-dependent thiol peroxidase%3B forms homodimers in solution%3B shows substrate specificity to alkyl hydroperoxides%3B periplasmic protein gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2342 YPO2343 YPO2343 tnp tnp 2637245 2637703 + transposase for the IS1541 insertion element gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2343 YPO2344 YPO2344 tyrR tyrR 2637850 2639427 - DNA-binding transcriptional regulator TyrR regulates genes involved in the biosynthesis and transport of aromatic amino acids gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2344 YPO2345 YPO2345 YPO2345 2639762 2640208 + hypothetical protein gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2345 YPO2346 YPO2346 YPO2346 2640270 2640728 + hypothetical protein gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2346 YPO2347 YPO2347 YPO2347 2640738 2641799 - hypothetical protein gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2347 YPO2348 YPO2348 YPO2348 2641796 2643193 - hypothetical protein gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2348 YPO2349 YPO2349 pspC pspC 2643501 2643860 - DNA-binding transcriptional activator PspC with PsbB forms toxin/antitoxin pair%3B activates the psp operon in response to phage infection%2C exposure to ethanol or osmotic shock gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2349 YPO2350 YPO2350 pspB pspB 2643860 2644087 - phage shock protein B acts together with PspC to induce psp operon during infection with phage%2C exposure to ethanol or osmotic shock%3B forms a complex with PspA and C%3B PspC is required for PspAB binding gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2350 YPO2351 YPO2351 pspA pspA 2644249 2644914 - phage shock protein PspA involved in maintaining membrane potential under membrane stress conditions%3B also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2351 YPO2352 YPO2352 pspF pspF 2645159 2646187 + phage shock protein operon transcriptional activator transcriptional activator for pspABCE which are induced in response to phage proteins%2C membrane altering stresses%2C and impaired proton expor gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2352 YPO2353 YPO2353 tnp tnp 2646352 2646810 - transposase for the IS1541 insertion element gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2353 YPO2354 YPO2354 YPO2354 2647154 2647339 + hypothetical protein No significant database hits gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2354 YPO2355 YPO2355 sapA sapA 2647475 2649121 + peptide transport periplasmic protein gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2355 YPO2356 YPO2356 sapB sapB 2649118 2650083 + peptide transport system permease gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2356 YPO2357 YPO2357 sapC sapC 2650070 2650960 + peptide transport system permease gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2357 YPO2358 YPO2358 sapD sapD 2650960 2651952 + peptide transport system ATP-binding protein gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2358 YPO2359 YPO2359 sapF sapF 2651952 2652767 + peptide transport system ATP-binding protein gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2359 YPO2360 YPO2360 YPO2360 2653157 2654437 + hypothetical protein gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2360 YPO2361 YPO2361 tppB tppB 2655080 2656585 + tripeptide transporter permease mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium%3B member of proton-dependent oligopeptide transport (POT) system family%3B in Escherichia coli this gene is regulated by OmpR although not via osmoregulation gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2361 YPO2362 YPO2362 YPO2362 2656840 2657430 + hypothetical protein gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2362 YPO2363 YPO2363 YPO2363 2657676 2657939 + hypothetical protein gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2363 YPO2364 YPO2364 YPO2364 2658092 2658874 - transposase/IS protein ypmt1.57c gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2364 YPO2365 YPO2365 y1093 y1093 2658871 2659893 - transposase for insertion sequence IS100 gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2365 YPO2366 YPO2366 YPO2366 2659979 2660098 + gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2366 YPO2367 YPO2367 gst gst 2660143 2660748 + glutathionine S-transferase gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2367 YPO2368 YPO2368 pdxY pdxY 2660808 2661668 - pyridoxamine kinase catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2368 YPO2369 YPO2369 tyrS tyrS 2661823 2663097 - tyrosyl-tRNA synthetase catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2369 YPO2370 YPO2370 pdxH pdxH 2663279 2663932 - pyridoxamine 5'-phosphate oxidase catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2370 YPO2371 YPO2371 YPO2371 2664023 2664337 - lipoprotein gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2371 YPO2372 YPO2372 anmK anmK 2664395 2665507 - anhydro-N-acetylmuramic acid kinase catalyzes hydrolysis of 1%2C6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate%3B involved in murein recycling gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2372 YPO2373 YPO2373 pcp pcp 2666063 2666530 + lipoprotein gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2373 YPO2374 YPO2374 slyA slyA 2666674 2667105 - transcriptional regulator SlyA Transcription regulator that can both activate or repress expression gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2374 YPO2375 YPO2375 YPO2375 2667903 2668799 - aldo/keto reductase gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2375 YPO2376 YPO2376 YPO2376 2668931 2669170 - hypothetical protein gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2376 YPO2377 YPO2377 YPO2377 2669344 2670981 + cell division protein with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2377 YPO2378 YPO2378 YPO2378 2671204 2671803 + TetR family transcriptional regulator gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2378 YPO2379 YPO2379 YPO2379 2671891 2672988 + N-ethylmaleimide reductase FMN-linked%3B catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2379 YPO2380 YPO2380 sepC sepC 2673209 2676163 - insecticial toxin gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2380 YPO2381 YPO2381 gloA gloA 2676436 2676843 + lactoylglutathione lyase gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2381 YPO2382 YPO2382 rnt rnt 2676955 2677602 + ribonuclease T Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2382 YPO2383 YPO2383 YPO2383 2677911 2678261 - hypothetical protein gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2383 YPO2384 YPO2384 YPO2384 2678361 2678582 - hypothetical protein No significant database hits. Doubtful CDS gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2384 YPO2385 YPO2385 YPO2385 2678686 2679552 + hypothetical protein gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2385 YPO2386 YPO2386 sodB sodB 2679930 2680508 + superoxide dismutase SodB%3B iron binding%3B present under aerobic and anaerobic conditions%3B destroys free radicals gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2386 YPO2387 YPO2387 purR purR 2681035 2682060 + DNA-binding transcriptional repressor PurR binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis%3B is involved in regulation of purB%2C purC%2C purEK%2C purHD%2C purL%2C purMN and guaBA expression%3B binds hypoxanthine and guanine as inducers gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2387 YPO2388 YPO2388 YPO2388 2682149 2683081 - DNA-binding transcriptional regulator gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2388 YPO2389 YPO2389 YPO2389 2683371 2684573 + inner membrane transport protein YdhC uncharacterized member of the major facilitator superfamily (MFS) gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2389 YPO2390 YPO2390 cfa cfa 2685053 2686204 + cyclopropane fatty acyl phospholipid synthase catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2390 YPO2391 YPO2391 ribE ribE 2686255 2686911 - riboflavin synthase subunit alpha catalyzes the formation of riboflavin from 6%2C7-dimethyl-8-(1-D-ribityl)lumazine gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2391 YPO2392 YPO2392 YPO2392 2687160 2688533 + multidrug efflux protein NorM%3B MdtK%3B functions as a Na(+)/drug antiporter%3B inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2392 YPO2393 YPO2393 pykF pykF 2689564 2690976 + pyruvate kinase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2393 YPO2394 YPO2394 lpp lpp 2691297 2691533 + major outer membrane lipoprotein gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2394 YPO2395 YPO2395 tnp tnp 2691724 2692182 + transposase for the IS1541 insertion element gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2395 YPO2396 YPO2396 y1093 y1093 2692764 2693786 + transposase for insertion sequence IS100 gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2396 YPO2397 YPO2397 YPO2397 2693783 2694565 + transposase/IS protein ypmt1.57c gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2397 YPO2398 YPO2398 YPO2398 2694609 2695628 - murein L%2CD-transpeptidase gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2398 YPO2399 YPO2399 YPO2399 2695899 2696321 - cysteine desufuration protein SufE Acts with SufS to catalyze the formation of L-alanine from L-cysteine gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2399 YPO2400 YPO2400 YPO2400 2696410 2697630 - bifunctional cysteine desulfurase/selenocysteine lyase catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2400 YPO2401 YPO2401 YPO2401 2697627 2698952 - cysteine desulfurase with SufBC activates cysteine desulfurase SufS gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2401 YPO2402 YPO2402 sufC sufC 2698927 2699673 - cysteine desulfurase part of SUF system involved in inserting iron-sulfur clusters into proteins%3B in Escherichia coli this protein forms a complex with SufBD%3B the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2402 YPO2403 YPO2403 YPO2403 2699859 2701370 - cysteine desulfurase with SufCD activates cysteine desulfurase SufS gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2403 YPO2404 YPO2404 sufA sufA 2701385 2701756 - iron-sulfur cluster assembly scaffold protein functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]%3B [4Fe-4S]) are assembled%3B forms a homodimer%3B similar to IscA protein gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2404 YPO2406 YPO2406 YPO2406 2702351 2702767 - hypothetical protein gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2406 YPO2407 YPO2407 YPO2407 2702889 2705945 - hypothetical protein gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2407 YPO2408 YPO2408 YPO2408 2706566 2707669 + hypothetical protein YdiK%3B inner membrane protein%3B ydiK promoter presents a PurR sequence%2C suggesting that its expression is purine-regulated%3B unknown function gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2408 YPO2409 YPO2409 ppsA ppsA 2708268 2710652 - phosphoenolpyruvate synthase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2409 YPO2410 YPO2410 YPO2410 2710989 2711810 + hypothetical protein gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2410 YPO2411 YPO2411 aroH aroH 2711967 2713013 + phospho-2-dehydro-3-deoxyheptonate aldolase tryptophan sensitive%3B catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2411 YPO2412 YPO2412 YPO2412 2713182 2714645 - gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2412 YPO2414 YPO2414 lplA lplA 2714697 2715713 - lipoate-protein ligase A Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2414 YPO2415 YPO2415 nlpC nlpC 2715838 2716302 - lipoprotein gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2415 YPO2416 YPO2416 YPO2416 2716582 2716968 - hypothetical protein gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2416 YPO2417 YPO2417 YPO2417 2716965 2717309 - hypothetical protein gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2417 YPO2418 YPO2418 arnT arnT 2717306 2718970 - 4-amino-4-deoxy-L-arabinose transferase catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2418 YPO2419 YPO2419 YPO2419 2718967 2719872 - hypothetical protein gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2419 YPO2420 YPO2420 YPO2420 2719869 2721872 - bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase Bifunctional polymyxin resistance arnA protein%3B catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose%3B active in certain mutant strains gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2420 YPO2421 YPO2421 pmrF pmrF 2721869 2722852 - undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2421 YPO2422 YPO2422 YPO2422 2722839 2723993 - UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2422 YPO2423 YPO2423 btuD btuD 2724343 2725104 - vitamin B12-transporter ATPase ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2423 YPO2424 YPO2424 btuE btuE 2725126 2725680 - glutathione peroxidase similar to glutathione peroxidase%3B member of the btuCED operon which is required for vitamin B12 transport across the inner membrane gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2424 YPO2425 YPO2425 btuC btuC 2725750 2726757 - vtamin B12-transporter permease with BtuD and BtuF transports vitamin B12 into the cell gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2425 YPO2426 YPO2426 YPO2426 2726984 2727442 - hypothetical protein gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2426 YPO2427 YPO2427 ihfA ihfA 2727776 2728072 - integration host factor subunit alpha This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2427 YPO2428 YPO2428 pheT pheT 2728077 2730464 - phenylalanyl-tRNA synthetase subunit beta catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a tetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 2 subfamily gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2428 YPO2429 YPO2429 pheS pheS 2730478 2731461 - phenylalanyl-tRNA synthetase subunit alpha catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a heterotetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 1 subfamily gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2429 YPO2430 YPO2430 rplT rplT 2731960 2732316 - 50S ribosomal protein L20 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2430 YPO2431 YPO2431 rpmI rpmI 2732354 2732551 - 50S ribosomal protein L35 gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2431 YPO2432 YPO2432 infC infC 2732648 2733199 - translation initiation factor IF-3 IF-3 has several functions that are required and promote translation initiation including%3B preventing association of 70S by binding to 30S%3B monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites%3B stimulates codon-anticodon interactions at P-site%3B involved in moving mRNA to the P-site%3B and in recycling subunits gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2432 YPO2433 YPO2433 thrS thrS 2733203 2735131 - threonyl-tRNA synthetase catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)%3B catalyzes a two-step reaction%2C first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2433 YPO2434 YPO2434 YPO2434 2735522 2735734 + hypothetical protein gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2434 YPO2436 YPO2436 YPO2436 2736493 2736807 - hypothetical protein No significant database hits gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2436 YPO2437 YPO2437 marC marC 2737063 2737746 + multiple drug resistance protein MarC protein involved in resistance to different drugs (tetracycline%2C chloramphenicol%2C beta-lactams%2C and quinolones)%3B part of the multiple antibiotic resistance (mar) locus%2C which is composed by the genes marC and marRAB%3B unknown function gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2437 YPO2438 YPO2438 YPO2438 2737868 2738530 - membrane-bound lytic murein transglycosylase gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2438 YPO2439 YPO2439 yfeA yfeA 2738739 2739710 + substrate-binding protein gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2439 YPO2440 YPO2440 yfeB yfeB 2739707 2740597 + ATP-binding transport protein gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2440 YPO2441 YPO2441 yfeC yfeC 2740597 2741481 + chelated iron transport system membrane protein gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2441 YPO2442 YPO2442 yfeD yfeD 2741478 2742371 + chelated iron transport system membrane protein gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2442 YPO2444 YPO2444 YPO2444 2742676 2743551 + hypothetical protein gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2444 YPO2445 YPO2445 yfeE yfeE 2743680 2744234 - yfeABCD locus regulator gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2445 YPO2446 YPO2446 YPO2446 2744645 2745310 + 2-deoxyglucose-6-phosphatase YniC%3B catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate%2C mannose 6-phosphate and p-nitrophenyl phosphate gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2446 YPO2447 YPO2447 y1062 y1062 2745561 2746769 - transposase for the IS285 insertion element gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2447 YPO2448 YPO2448 solA solA 2747130 2748245 + N-methyltryptophan oxidase catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde%3B FAD-binding%3B can also catalyze the demethylation of other N-methyl amino acids gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2448 YPO2449 YPO2449 YPO2449 2748512 2749126 + LuxR family transcriptional regulator gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2449 YPO2450 YPO2450 tqsA tqsA 2749698 2750756 - transport protein transport of quorum-sensing signal%3B mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2450 YPO2451 YPO2451 YPO2451 2750905 2751972 - hypothetical protein gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2451 YPO2452 YPO2452 YPO2452 2752016 2752144 - hypothetical protein No significant database hits. Doubtful CDS gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2452 YPO2455 YPO2455 YPO2455 2753023 2753721 - hypothetical protein gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2455 YPO2456 YPO2456 ypeI ypeI 2754119 2754775 + N-acylhomoserine lactone synthase gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2456 YPO2457 YPO2457 ypeR ypeR 2754768 2755505 - quorum-sensing transcriptional activator YpeR gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2457 YPO2458 YPO2458 YPO2458 2755992 2756972 - LysR family transcriptional regulator gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2458 YPO2459 YPO2459 YPO2459 2757366 2758724 + transporter protein gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2459 YPO2460 YPO2460 YPO2460 2758771 2759274 + hypothetical protein gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2460 YPO2461 YPO2461 YPO2461 2759285 2760304 + oxidoreductase gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2461 YPO2462 YPO2462 YPO2462 2760382 2760936 - hypothetical protein gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2462 YPO2463 YPO2463 YPO2463 2760947 2761951 - hypothetical protein gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2463 YPO2464 YPO2464 YPO2464 2761969 2762919 - hypothetical protein gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2464 YPO2465 YPO2465 YPO2465 2762916 2764262 - hypothetical protein gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2465 YPO2467 YPO2467 YPO2467 2764670 2767957 - hypothetical protein gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2467 YPO2468 YPO2468 YPO2468 2767954 2768940 - hypothetical protein gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2468 YPO2469 YPO2469 YPO2469 2769322 2769654 - hypothetical protein gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2469 YPO2470 YPO2470 YPO2470 2770137 2771384 + hypothetical protein gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2470 YPO2471 YPO2471 YPO2471 2771967 2773241 - hypothetical protein gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2471 YPO2472 YPO2472 YPO2472 2773280 2774395 - hypothetical protein gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2472 YPO2473 YPO2473 YPO2473 2774518 2775456 - hypothetical protein No significant database hits gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2473 YPO2474 YPO2474 YPO2474 2775483 2776538 - hypothetical protein gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2474 YPO2475 YPO2475 YPO2475 2776685 2777509 - sugar ABC transporter permease gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2475 YPO2476 YPO2476 YPO2476 2777510 2778385 - sugar ABC transporter permease gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2476 YPO2477 YPO2477 YPO2477 2778494 2779780 - solute-binding protein gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2477 YPO2478 YPO2478 YPO2478 2780052 2781092 + LacI family transcriptional regulator gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2478 YPO2479 YPO2479 manB manB 2781109 2782497 + phosphomannomutase gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2479 YPO2480 YPO2480 mtlK mtlK 2782597 2783676 + mannitol transport ATP-binding protein gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2480 YPO2481 YPO2481 YPO2481 2783941 2784486 - hypothetical protein gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2481 YPO2482 YPO2482 YPO2482 2784744 2785196 - hypothetical protein gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2482 YPO2483 YPO2483 YPO2483 2785296 2785700 - hypothetical protein gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2483 YPO2484 YPO2484 YPO2484 2785842 2786009 - hypothetical protein No significant database hits gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2484 YPO2485 YPO2485 YPO2485 2786212 2786409 - hypothetical protein gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2485 YPO2486 YPO2486 YPO2486 2786419 2788452 - hypothetical protein gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2486 YPO2488 YPO2488 YPO2488 2789116 2789367 - hypothetical protein gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2488 YPO2489 YPO2489 YPO2489 2789612 2790115 - hypothetical protein gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2489 YPO2490 YPO2490 YPO2490 2790123 2797730 - hemolysin gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2490 YPO2491 YPO2491 YPO2491 2797874 2799562 - hemolysin activator protein gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2491 YPO2492 YPO2492 YPO2492 2800214 2801179 - dioxygenase subunit beta gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2492 YPO2493 YPO2493 YPO2493 2801275 2802399 - dioxygenase subunit alpha gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2493 YPO2494 YPO2494 YPO2494 2802516 2803997 - transporter member of the betaine%2C carnitine%2C choline transporter (BCCT) family%3B unknown function gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2494 YPO2495 YPO2495 YPO2495 2804528 2804710 - hypothetical protein gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2495 YPO2496 YPO2496 YPO2496 2804779 2805876 - tartrate dehydrogenase gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2496 YPO2497 YPO2497 YPO2497 2805967 2806908 + LysR family transcriptional regulator gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2497 YPO2498 YPO2498 YPO2498 2807155 2808159 + LacI family transcriptional regulator gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2498 YPO2499 YPO2499 rbsC rbsC 2808292 2809284 - sugar transport system permease gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2499 YPO2500 YPO2500 rbsA rbsA 2809281 2810771 - sugar transport system ATP-binding protein gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2500 YPO2501 YPO2501 rbsB rbsB 2810811 2811728 - sugar binding protein gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2501 YPO2502 YPO2502 gutB gutB 2811903 2813129 - zinc-binding dehydrogenase gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2502 YPO2503 YPO2503 YPO2503 2813712 2814380 - hypothetical protein gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2503 YPO2504 YPO2504 YPO2504 2814576 2815118 - hypothetical protein No significant database hits. CDS DNA has a low G+C content%2C 38.85%25. gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2504 YPO2505 YPO2505 YPO2505 2815356 2816294 - hypothetical protein gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2505 YPO2506 YPO2506 ompX ompX 2816610 2817134 - outer membrane protein X OmpX%3B involved in cell adhesion%3B forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface%3B mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2506 YPO2507 YPO2507 YPO2507 2817539 2818426 + threonine and homoserine efflux system gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2507 YPO2508 YPO2508 YPO2508 2818442 2818939 + hypothetical protein gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2508 YPO2509 YPO2509 tam tam 2818962 2819738 + trans-aconitate 2-methyltransferase catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2509 YPO2510 YPO2510 dps dps 2819995 2820498 + DNA starvation/stationary phase protection protein Dps binds DNA in a non-sequence-specific manner and is abundant during stationary phase%3B forms a DNA-protein crystal that protects DNA from damage%3B required for normal starvation response and long-term stationary viability%3B forms a homododecameric complex and sequesters iron which provides protection against oxidative damage gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2510 YPO2511 YPO2511 YPO2511 2820818 2821945 + hypothetical protein gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2511 YPO2512 YPO2512 glnH glnH 2822515 2823258 + glutamine ABC transporter substrate-binding protein similar to periplasmic-binding component of ABC transporters gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2512 YPO2513 YPO2513 glnP glnP 2823293 2823949 + glutamine ABC transporter permease similar to permease component of ABC transporters%3B mutations impair ability of Escherichia coli to transport and utilize glutamine gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2513 YPO2514 YPO2514 glnQ glnQ 2823946 2824668 + glutamine ABC transporter ATP-binding protein similar to ATP-binding component of ABC transporters gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2514 YPO2515 YPO2515 YPO2515 2824908 2826155 - chemotactic transducer gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2515 YPO2516 YPO2516 y1093 y1093 2826265 2827287 + transposase for insertion sequence IS100 gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2516 YPO2517 YPO2517 YPO2517 2827284 2828066 + transposase/IS protein ypmt1.57c gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2517 YPO2519 YPO2519 YPO2519 2828928 2829938 - SAM-dependent methyltransferase gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2519 YPO2521 YPO2521 YPO2521 2830226 2830486 + hypothetical protein gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2521 YPO2521a YPO2521a YPO2521a 2830477 2830635 - hypothetical protein gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2521a YPO2522 YPO2522 ybiB ybiB 2830868 2831827 - glycosyl transferase family protein gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2522 YPO2523 YPO2523 menE menE 2831893 2833308 - O-succinylbenzoic acid--CoA ligase gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2523 YPO2524 YPO2524 menC menC 2833296 2834267 - O-succinylbenzoate synthase catalyzes the dehydration of 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2524 YPO2525 YPO2525 menB menB 2834267 2835124 - naphthoate synthase catalyzes the formation of 1%2C4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2525 YPO2526 YPO2526 YPO2526 2835138 2835956 - acyl-CoA thioester hydrolase catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2526 YPO2527 YPO2527 menD menD 2835953 2837656 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase SEPHCHC synthase%3B forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2527 YPO2528 YPO2528 menF menF 2837884 2839251 - menaquinone-specific isochorismate synthase gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2528 YPO2530 YPO2530 YPO2530 2839779 2840423 - hypothetical protein gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2530 YPO2531 YPO2531 elaB elaB 2840978 2841286 - hypothetical protein gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2531 YPO2531a YPO2531a YPO2531a 2841811 2841993 + membrane protein gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2531a YPO2533 YPO2533 edd edd 2842212 2844089 - phosphogluconate dehydratase catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2533 YPO2534 YPO2534 YPO2534 2844093 2844608 - hypothetical protein gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2534 YPO2535 YPO2535 YPO2535 2844638 2845969 - sugar transporter gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2535 YPO2536 YPO2536 YPO2536 2846500 2847450 - D-isomer specific 2-hydroxyacid dehydrogenase family protein gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2536 YPO2537 YPO2537 YPO2537 2847916 2848908 - LacI family transcriptional regulator gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2537 YPO2538 YPO2538 YPO2538 2849377 2850660 + lipoprotein gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2538 YPO2539 YPO2539 idnO idnO 2851419 2852183 + gluconate 5-dehydrogenase Involved in the nonphosphorylative%2C ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2539 YPO2540 YPO2540 gntV gntV 2852232 2852768 + thermosensitive gluconokinase gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2540 YPO2541 YPO2541 YPO2541 2852846 2853313 + hypothetical protein gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2541 YPO2542 YPO2542 YPO2542 2853651 2854841 - hypothetical protein gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2542 YPO2543 YPO2543 nuoN nuoN 2855077 2856540 - NADH dehydrogenase subunit N Catalyzes the transfer of electrons from NADH to quinone gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2543 YPO2544 YPO2544 nuoM nuoM 2856547 2858079 - NADH dehydrogenase subunit M Catalyzes the transfer of electrons from NADH to quinone gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2544 YPO2545 YPO2545 nuoL nuoL 2858119 2859963 - NADH dehydrogenase subunit L Catalyzes the transfer of electrons from NADH to ubiquinone gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2545 YPO2546 YPO2546 nuoK nuoK 2859960 2860262 - NADH dehydrogenase subunit K Catalyzes the transfer of electrons from NADH to quinone gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2546 YPO2547 YPO2547 nuoJ nuoJ 2860259 2860804 - NADH dehydrogenase subunit J Catalyzes the transfer of electrons from NADH to quinone gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2547 YPO2548 YPO2548 nuoI nuoI 2860817 2861359 - NADH dehydrogenase subunit I Catalyzes the transfer of electrons from NADH to quinone gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2548 YPO2549 YPO2549 nuoH nuoH 2861374 2862351 - NADH dehydrogenase subunit H Catalyzes the transfer of electrons from NADH to quinone gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2549 YPO2550 YPO2550 nuoG nuoG 2862348 2865092 - NADH dehydrogenase subunit G Catalyzes the transfer of electrons from NADH to quinone gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2550 YPO2551 YPO2551 nuoF nuoF 2865179 2866564 - NADH dehydrogenase I subunit F shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B NuoF is part of the soluble NADH dehydrogenase fragment%2C which represents the electron input part of NADH dehydrogenase gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2551 YPO2552 YPO2552 nuoE nuoE 2866561 2867079 - NADH dehydrogenase subunit E Catalyzes the transfer of electrons from NADH to quinone gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2552 YPO2553 YPO2553 nuoD nuoD 2867127 2868923 - bifunctional NADH:ubiquinone oxidoreductase subunit C/D NuoCD%3B NDH-1 shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B subunits NuoCD%2C E%2C F%2C and G constitute the peripheral sector of the complex%3B in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2553 YPO2554 YPO2554 nuoB nuoB 2869064 2869741 - NADH dehydrogenase subunit B The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2554 YPO2555 YPO2555 nuoA nuoA 2869843 2870337 - NADH dehydrogenase subunit A Catalyzes the transfer of electrons from NADH to quinone gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2555 YPO2556 YPO2556 hexA hexA 2871021 2871953 - LysR family transcriptional regulator gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2556 YPO2558 YPO2558 aat aat 2872809 2874023 + aminotransferase broad specificity%3B family IV%3B in Corynebacterium glutamicum this protein can use glutamate%2C 2-aminobutyrate%2C and aspartate as amino donors and pyruvate as the acceptor gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2558 YPO2559 YPO2559 YPO2559 2874174 2874767 + hypothetical protein gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2559 YPO2560 YPO2560 YPO2560 2874814 2875083 - hypothetical protein gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2560 YPO2561 YPO2561 YPO2561 2875110 2876945 - ion transport protein gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2561 YPO2562 YPO2562 YPO2562 2877234 2877890 - phosphatase gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2562 YPO2563 YPO2563 YPO2563 2878055 2878549 - hypothetical protein gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2563 YPO2564 YPO2564 YPO2564 2878857 2879312 - hypothetical protein gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2564 YPO2565 YPO2565 YPO2565 2879553 2879744 + hypothetical protein gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2565 YPO2566 YPO2566 ackA ackA 2879734 2880936 + acetate kinase AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation%3B utilizes magnesium and ATP%3B also involved in conversion of acetate to aceyl-CoA gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2566 YPO2567 YPO2567 pta pta 2881104 2883257 + phosphate acetyltransferase catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate%3B when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2567 YPO2568 YPO2568 YPO2568 2883523 2884557 - LacI family transcriptional regulator gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2568 YPO2569 YPO2569 YPO2569 2884924 2885367 + PTS system transporter subunit IIA gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2569 YPO2569a YPO2569a YPO2569a 2885536 2885790 + PTS system transporter subunit IIB gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2569a YPO2571 YPO2571 y1062 y1062 2885812 2887020 - transposase for the IS285 insertion element gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2571 YPO2572 YPO2572 pbpC pbpC 2887093 2887932 - gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2572 YPO2573 YPO2573 YPO2573 2887989 2894003 - hypothetical protein gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2573 YPO2574 YPO2574 YPO2574 2894374 2894928 - hypothetical protein No significant database matches to the full length CDS gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2574 YPO2576 YPO2576 YPO2576 2895617 2896471 - hypothetical protein gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2576 YPO2577 YPO2577 YPO2577 2896777 2898303 + aldehyde dehydrogenase gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2577 YPO2578 YPO2578 YPO2578 2898317 2900263 + thiamine pyrophosphate-dependent protein gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2578 YPO2579 YPO2579 YPO2579 2900557 2901542 + gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2579 YPO2581 YPO2581 YPO2581 2901668 2902597 + sugar-binding protein gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2581 YPO2582 YPO2582 YPO2582 2902646 2904193 + sugar transport ATP-binding protein gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2582 YPO2583 YPO2583 YPO2583 2904205 2905233 + sugar transport system permease gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2583 YPO2584 YPO2584 YPO2584 2905257 2906390 + hypothetical protein gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2584 YPO2585 YPO2585 YPO2585 2906422 2908392 + carbohydrate kinase gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2585 YPO2586 YPO2586 YPO2586 2908545 2909465 + hypothetical protein gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2586 YPO2587 YPO2587 YPO2587 2909475 2910290 + hypothetical protein gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2587 YPO2588 YPO2588 YPO2588 2910755 2912650 + ABC transport protein gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2588 YPO2589 YPO2589 YPO2589 2912666 2912953 - hypothetical protein gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2589 YPO2590 YPO2590 YPO2590 2913396 2913590 + hypothetical protein no significant database hits gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2590 YPO2591 YPO2591 YPO2591 2913608 2913790 - hypothetical protein no significant database hits gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2591 YPO2592 YPO2592 YPO2592 2913972 2914937 - hypothetical protein gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2592 YPO2593 YPO2593 YPO2593 2915360 2915977 + LuxR family transcriptional regulator gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2593 YPO2594 YPO2594 YPO2594 2916297 2916787 - gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2594 YPO2594a YPO2594a YPO2594a 2916969 2917309 + ncRNA-cspA thermoregulator ncRNA gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2594a YPO2595 YPO2595 cspE cspE 2917054 2917263 + cold shock protein CspE member of the CspA family%3B constitutively expressed RNA/ssDNA-binding protein%3B functions in helping cells adapt to low temperature%3B aids nucleic acid melting%3B participates in gene regulation%3B can act as a transcription antiterminator gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2595 YPO2596 YPO2596 crcB crcB 2917686 2918069 - camphor resistance protein CrcB may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2596 YPO2597 YPO2597 tatE tatE 2918636 2918893 + twin-arginine translocation protein TatA TatE%3B similar to TatA and found in some proteobacteria%3B part of system that translocates proteins with a conserved twin arginine motif across the inner membrane%3B capable of translocating folded substrates typically those with bound cofactors%3B similar to a protein import system in thylakoid membranes gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2597 YPO2598 YPO2598 lipA lipA 2919074 2920039 - lipoyl synthase catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2598 YPO2599 YPO2599 lipB lipB 2920232 2920921 - lipoate-protein ligase B lipoyl/octanoyltransferase%3B catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2599 YPO2600 YPO2600 YPO2600 2921145 2921408 - hypothetical protein gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2600 YPO2601 YPO2601 dacA dacA 2921606 2922808 - D-alanyl-D-alanine carboxypeptidase fraction A penicillin-binding protein 5%3B removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2601 YPO2602 YPO2602 rlpA rlpA 2923211 2924293 - rare lipoprotein A gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2602 YPO2603 YPO2603 rodA rodA 2924303 2925415 - cell wall shape-determining protein gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2603 YPO2604 YPO2604 pbpA pbpA 2925600 2927495 - penicillin-binding protein 2 gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2604 YPO2605 YPO2605 YPO2605 2927577 2928047 - rRNA large subunit methyltransferase SPOUT methyltransferase family protein%3B crystal structure shows homodimer%3B in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2605 YPO2606 YPO2606 YPO2606 2928051 2928368 - hypothetical protein gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2606 YPO2607 YPO2607 nadD nadD 2928592 2929254 - nicotinic acid mononucleotide adenylyltransferase transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase%3B essential enzyme in bacteria gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2607 YPO2608 YPO2608 holA holA 2929244 2930278 - DNA polymerase III subunit delta required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2608 YPO2609 YPO2609 rlpB rlpB 2930275 2930898 - LPS-assembly lipoprotein RlpB rare lipoprotein B%3B involved in the assembly of LPS in the outer membrane gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2609 YPO2610 YPO2610 leuS leuS 2930913 2933495 - leucyl-tRNA synthetase leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA(Leu) recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2610 YPO2611 YPO2611 YPO2611 2933756 2934238 + hypothetical protein gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2611 YPO2612 YPO2612 gltL gltL 2934372 2935100 - glutamate/aspartate transport ATP-binding protein gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2612 YPO2613 YPO2613 gltK gltK 2935097 2935771 - glutamate/aspartate transport system permease gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2613 YPO2614 YPO2614 gltJ gltJ 2935771 2936511 - glutamate/aspartate transport system permease gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2614 YPO2615 YPO2615 glnH glnH 2936685 2937602 - glutamate and aspartate transporter subunit gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2615 YPO2616 YPO2616 lnt lnt 2938367 2939914 - apolipoprotein N-acyltransferase Transfers the fatty acyl group on membrane lipoproteins gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2616 YPO2617 YPO2617 ybeX ybeX 2939922 2940800 - hypothetical protein gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2617 YPO2618 YPO2618 YPO2618 2940918 2941391 - metalloprotease gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2618 YPO2619 YPO2619 YPO2619 2941388 2942500 - hypothetical protein gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2619 YPO2620 YPO2620 miaB miaB 2942788 2944212 - (dimethylallyl)adenosine tRNA methylthiotransferase catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2620 YPO2621 YPO2621 ubiF ubiF 2944454 2945635 + 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1%2C4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol%3B functions in the biosynthesis of ubiquinone or coenzyme Q gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2621 YPO2622 YPO2622 YPO2622 2946762 2946899 + hypothetical protein no significant database hits gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2622 YPO2623 YPO2623 asnB asnB 2946948 2948612 - asparagine synthetase B functions in asparagine biosynthesis%3B converts glutamine%2C aspartate%2C ATP%2C and water to glutamate%2C asparagine%2C pyrophosphate and AMP gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2623 YPO2624 YPO2624 nagD nagD 2948967 2949719 - UMP phosphatase gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2624 YPO2625 YPO2625 nagC nagC 2949792 2951021 - N-acetylglucosamine regulatory protein gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2625 YPO2626 YPO2626 nagA nagA 2951035 2952180 - N-acetylglucosamine-6-phosphate deacetylase catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2626 YPO2627 YPO2627 nagB nagB 2952200 2953000 - glucosamine-6-phosphate deaminase catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2627 YPO2628 YPO2628 nagE nagE 2953400 2955433 + PTS system N-acetylglucosamine-specific transporter subunit IIABC gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2628 YPO2629 YPO2629 tnp tnp 2955698 2956156 + transposase for the IS1541 insertion element gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2629 YPO2630 YPO2630 glnS glnS 2956358 2958025 + glutaminyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2630 YPO2631 YPO2631 ybfM ybfM 2958731 2960152 + hypothetical protein gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2631 YPO2632 YPO2632 chb chb 2960480 2963141 + gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2632 YPO2634 YPO2634 fur fur 2963585 2964031 - ferric uptake regulator negatively regulates a number of operons that encode enzymes involved in iron transport%3B activated by manganese%3B forms a homodimer gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2634 YPO2635 YPO2635 fldA fldA 2964398 2964925 - flavodoxin FldA An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2635 YPO2637 YPO2637 YPO2637 2965342 2965629 - LexA regulated protein gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2637 YPO2638 YPO2638 YPO2638 2965961 2966728 - hypothetical protein gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2638 YPO2638a YPO2638a YPO2638a 2967439 2967690 + hypothetical protein gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2638a YPO2640 YPO2640 YPO2640 2968121 2968384 - IS1400 transposase A trp1400A gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2640 YPO2642 YPO2642 YPO2642 2968931 2969713 - transposase/IS protein ypmt1.57c gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2642 YPO2643 YPO2643 y1093 y1093 2969710 2970732 - transposase for insertion sequence IS100 gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2643 YPO2644 YPO2644 YPO2644 2970819 2971556 + gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2644 YPO2645 YPO2645 proX proX 2971786 2972790 - glycine betaine transporter substrate-binding protein with ProVW%2C part of the high-affinity transport system for the osmoprotectant glycine betaine gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2645 YPO2646 YPO2646 proW proW 2972838 2974004 - glycine betaine transporter membrane protein with ProVX is involved in the high-affinity uptake of glycine betaine gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2646 YPO2647 YPO2647 proV proV 2973997 2975196 - glycine betaine/L-proline transport ATP-binding protein gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2647 YPO2648 YPO2648 nrdF nrdF 2975872 2976843 - ribonucleotide-diphosphate reductase subunit beta B2 or R2 protein%3B type 1b enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdE gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2648 YPO2649 YPO2649 nrdE nrdE 2976950 2979031 - ribonucleotide-diphosphate reductase subunit alpha Catalyzes the rate-limiting step in dNTP synthesis gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2649 YPO2650 YPO2650 nrdI nrdI 2979082 2979486 - ribonucleotide reductase stimulatory protein in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2650 YPO2651 YPO2651 nrdH nrdH 2979500 2979736 - glutaredoxin gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2651 YPO2652 YPO2652 asr asr 2980257 2980622 + acid shock protein required for growth and survival under moderately acid conditions gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2652 YPO2653 YPO2653 YPO2653 2981100 2981435 + hypothetical protein gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2653 YPO2654 YPO2654 yicN yicN 2981533 2981982 - hypothetical protein gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2654 YPO2656 YPO2656 y1062 y1062 2982348 2983556 + transposase for the IS285 insertion element gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2656 YPO2657 YPO2657 YPO2657 2983593 2983802 - gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2657 YPO2657a YPO2657a YPO2657a 2984138 2984599 + ncRNA-cspA thermoregulator ncRNA gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2657a YPO2659 YPO2659 cspB cspB 2984316 2984528 + cold shock protein gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2659 YPO2660 YPO2660 YPO2660 2985405 2986982 + solute-binding protein gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2660 YPO2661 YPO2661 YPO2661 2986979 2987950 + hypothetical protein gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2661 YPO2662 YPO2662 YPO2662 2987947 2988753 + binding-protein-dependent transport protein gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2662 YPO2663 YPO2663 YPO2663 2988753 2989559 + transport ATPase gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2663 YPO2664 YPO2664 YPO2664 2989552 2990217 + transport ATPase gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2664 YPO2665 YPO2665 ureA ureA 2991416 2991718 + urease subunit gamma UreA%2C with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide%3B nickel metalloenzyme%3B accessory proteins UreD%2C UreE%2C UreF%2C and UreG are necessary for assembly of the metallocenter gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2665 YPO2666 YPO2666 ureB ureB 2991771 2992205 + urease subunit beta ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide%3B in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa%3B the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta) gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2666 YPO2667 YPO2667 ureC ureC 2992295 2994013 + urease subunit alpha ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide%3B in Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa%3B the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2667 YPO2668 YPO2668 ureE ureE 2994309 2995004 + urease accessory protein UreE involved in the assembly of the urease metallocenter%3B possible nickel donor gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2668 YPO2669 YPO2669 ureF ureF 2995026 2995712 + urease accessory protein gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2669 YPO2670 YPO2670 ureG ureG 2995839 2996501 + urease accessory protein gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2670 YPO2671 YPO2671 ureD ureD 2996498 2997461 + gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2671 YPO2672 YPO2672 YPO2672 2997656 2998648 + urea transporter gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2672 YPO2673 YPO2673 YPO2673 2998797 2999855 + nickel transport protein gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2673 YPO2674 YPO2674 hdeB hdeB 3000024 3000353 - acid-resistance protein gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2674 YPO2675 YPO2675 YPO2675 3000971 3002146 + voltage-gated potassium channel gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2675 YPO2676 YPO2676 ccrB ccrB 3002244 3002648 - camphor resistance protein CrcB may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2676 YPO2677 YPO2677 YPO2677 3002664 3003044 - hypothetical protein gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2677 YPO2677a YPO2677a YPO2677a 3003133 3003312 - hypothetical protein gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2677a YPO2678 YPO2678 celA celA 3004085 3004402 + PTS system N%2CN'-diacetylchitobiose-specific transporter subunit IIB catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2678 YPO2679 YPO2679 celB celB 3004413 3005774 + PTS system N%2CN'-diacetylchitobiose-specific transporter subunit IIC catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2679 YPO2680 YPO2680 celC celC 3005941 3006288 + PTS system N%2CN'-diacetylchitobiose-specific transporter subunit IIA catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2680 YPO2681 YPO2681 celD celD 3006325 3007167 + DNA-binding transcriptional regulator ChbR represses the celABCDF-ydjC operon involved in carbon uptake gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2681 YPO2682 YPO2682 YPO2682 3007219 3007980 + hypothetical protein gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2682 YPO2683 YPO2683 YPO2683 3007987 3008163 - hypothetical protein no significant database hits to the full length CDS gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2683 YPO2684 YPO2684 YPO2684 3008275 3008643 - hypothetical protein gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2684 YPO2685 YPO2685 seqA seqA 3009138 3009665 + replication initiation regulator SeqA negative modulator of the initiation of chromosome replication gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2685 YPO2686 YPO2686 pgm pgm 3009738 3011381 + phosphoglucomutase catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2686 YPO2686a YPO2686a YPO2686a 3011755 3011997 + hypothetical protein gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2686a YPO2687 YPO2687 YPO2687 3012125 3012553 - hypothetical protein gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2687 YPO2688 YPO2688 kdpE kdpE 3012648 3013277 - DNA-binding transcriptional activator KdpE response regulator in two-component regulatory system with KdpD%3B regulates the kdp operon involved in potassium transport gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2688 YPO2689 YPO2689 kdpD kdpD 3013570 3016296 - sensor protein KdpD sensory histidine kinase in two-component regulatory system with KdpE%3B signal sensing protein gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2689 YPO2690 YPO2690 kdpC kdpC 3016306 3016908 - potassium-transporting ATPase subunit C One of the components of the high-affinity ATP-driven potassium transport (or KDP)system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2690 YPO2691 YPO2691 kdpB kdpB 3017120 3019186 - potassium-transporting ATPase subunit B One of the components of the high-affinity ATP-driven potassium transport (or KDP) system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2691 YPO2692 YPO2692 kdpA kdpA 3019280 3020968 - potassium-transporting ATPase subunit A catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2692 YPO2693 YPO2693 ybfA ybfA 3021463 3021669 + hypothetical protein gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2693 YPO2694 YPO2694 YPO2694 3022008 3022490 + hypothetical protein gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2694 YPO2695 YPO2695 phrB phrB 3022620 3024083 + deoxyribodipyrimidine photolyase UV-induced DNA repair%3B converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers%3B light dependent gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2695 YPO2696 YPO2696 YPO2696 3024080 3025111 + 3'%2C5'-cyclic-nucleotide phosphodiesterase gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2696 YPO2697 YPO2697 YPO2697 3025234 3025980 + hydrolase-oxidase gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2697 YPO2698 YPO2698 YPO2698 3026599 3027252 + gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2698 YPO2699 YPO2699 YPO2699 3027249 3028199 + hypothetical protein gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2699 YPO2700 YPO2700 YPO2700 3028196 3028933 + LamB/YcsF family protein gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2700 YPO2701 YPO2701 YPO2701 3029018 3029749 + hypothetical protein gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2701 YPO2702 YPO2702 YPO2702 3029746 3030765 + hypothetical protein gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2702 YPO2703 YPO2703 pcp pcp 3030775 3031422 + pyrrolidone-carboxylate peptidase catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2703 YPO2704 YPO2704 ung ung 3031513 3032199 - uracil-DNA glycosylase Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2704 YPO2705 YPO2705 YPO2705 3032552 3032935 + autonomous glycyl radical cofactor GrcA stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2705 YPO2706 YPO2706 plaA plaA 3033114 3034076 + phospholipase A gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2706 YPO2707 YPO2707 yplB yplB 3034154 3034810 + phospholipase A accessory protein gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2707 YPO2708 YPO2708 srmB srmB 3034941 3036266 - ATP-dependent RNA helicase SrmB facilitates an early step in the assembly of the 50S subunit of the ribosome gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2708 YPO2709 YPO2709 YPO2709 3036506 3037264 + hypothetical protein gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2709 YPO2710 YPO2710 nadB nadB 3037547 3039184 - L-aspartate oxidase catalyzes the formation of oxaloacetate from L-aspartate gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2710 YPO2711 YPO2711 rpoE rpoE 3039372 3039947 + RNA polymerase sigma factor RpoE Member of the extracytoplasmic function sigma factors which are active under specific conditions%3B binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription%3B this sigma factor is involved in heat shock and oxidative stress response gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2711 YPO2712 YPO2712 rseA rseA 3039973 3040629 + anti-RNA polymerase sigma factor SigE gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2712 YPO2713 YPO2713 rseB rseB 3040629 3041585 + periplasmic negative regulator of sigmaE periplasmic protein%3B interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2713 YPO2714 YPO2714 rseC rseC 3041582 3042037 + SoxR reducing system protein RseC involved in the reduction of the SoxR iron-sulfur cluster gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2714 YPO2715 YPO2715 lepA lepA 3042058 3042912 - hypothetical protein gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2715 YPO2716 YPO2716 lepA lepA 3043412 3045211 + GTP-binding protein LepA binds to the ribosome on the universally-conserved alpha-sarcin loop gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2716 YPO2717 YPO2717 lepB lepB 3045221 3046219 + signal peptidase I catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2717 YPO2718 YPO2718 rnc rnc 3046571 3047251 + ribonuclease III cytoplasmic enzyme involved in processing rRNA and some mRNAs%3B substrates typically have dsRNA regions%3B forms a homodimer%3B have N-terminal nuclease and C-terminal RNA-binding domains%3B requires magnesium as preferred ion for activity gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2718 YPO2719 YPO2719 era era 3047248 3048159 + GTP-binding protein Era Era%3B Escherichia coli Ras-like protein%3B Bex%3B Bacillus Era-complementing segment%3B essential protein in Escherichia coli that is involved in many cellular processes%3B GTPase%3B binds the cell membrane through apparent C-terminal domain%3B mutants are arrested during the cell cycle%3B Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2719 YPO2720 YPO2720 recO recO 3048169 3048894 + DNA repair protein RecO involved in DNA repair and RecFOR pathway recombination%3B RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2720 YPO2721 YPO2721 y1093 y1093 3049021 3050043 + transposase for insertion sequence IS100 gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2721 YPO2722 YPO2722 YPO2722 3050040 3050822 + transposase/IS protein ypmt1.57c gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2722 YPO2724 YPO2724 YPO2724 3051683 3055510 + hypothetical protein gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2724 YPO2725 YPO2725 YPO2725 3055804 3058569 + hypothetical protein gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2725 YPO2726 YPO2726 YPO2726 3058928 3059776 + hypothetical protein gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2726 YPO2727 YPO2727 YPO2727 3059796 3060602 + hypothetical protein gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2727 YPO2728 YPO2728 YPO2728 3060699 3061178 + hypothetical protein gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2728 YPO2729 YPO2729 YPO2729 3061203 3061550 + hypothetical protein gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2729 YPO2730 YPO2730 YPO2730 3061607 3061948 - hypothetical protein gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2730 YPO2731 YPO2731 YPO2731 3062324 3064363 - hypothetical protein gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2731 YPO2732 YPO2732 lemA lemA 3064368 3064910 - hypothetical protein gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2732 YPO2733 YPO2733 YPO2733 3065526 3065993 + hypothetical protein No significant database matches. CDS DNA has a low GC content%2C 35.47%25. gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2733 YPO2734 YPO2734 ccmA ccmA 3066438 3067094 + cytochrome c biogenesis protein CcmA ATP-binding protein%3B required for proper cytochrome c maturation gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2734 YPO2735 YPO2735 ccmB ccmB 3067064 3067723 + heme exporter protein B gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2735 YPO2736 YPO2736 ccmC ccmC 3067786 3068523 + heme exporter protein C gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2736 YPO2737 YPO2737 ccmD ccmD 3068520 3068822 + heme exporter protein D gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2737 YPO2738 YPO2738 ccmE ccmE 3068819 3069313 + cytochrome c-type biogenesis protein CcmE CycJ%3B periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes%3B requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome%3B part of the cytochrome c maturation system%3B periplasmic protein anchored to the inner membrane gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2738 YPO2739 YPO2739 ccmF ccmF 3069310 3071280 + cytochrome c-type biogenesis protein gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2739 YPO2740 YPO2740 ccmG ccmG 3071277 3071843 + thiol:disulfide interchange protein DsbE gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2740 YPO2741 YPO2741 ccmH ccmH 3071840 3072352 + cytochrome c-type biogenesis protein gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2741 YPO2743 YPO2743 vacJ vacJ 3073614 3074378 + VacJ lipoprotein gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2743 YPO2744 YPO2744 fadL fadL 3074485 3075756 - long-chain fatty acid outer membrane transporter gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2744 YPO2745 YPO2745 YPO2745 3076164 3076460 + hypothetical protein gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2745 YPO2746 YPO2746 fadI fadI 3076747 3078057 + 3-ketoacyl-CoA thiolase FadI%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadJ%3B similar to FadA2B2 complex%3B functions in beta-oxidation of fatty acids during anaerobic growth gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2746 YPO2747 YPO2747 fadJ fadJ 3078057 3080381 + multifunctional fatty acid oxidation complex subunit alpha multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI%3B similar to FadA2B2 complex%3B involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2747 YPO2748 YPO2748 sixA sixA 3080950 3081441 + phosphohistidine phosphatase gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2748 YPO2749 YPO2749 YPO2749 3081827 3082357 - hypothetical protein gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2749 YPO2750 YPO2750 YPO2750 3082727 3083659 + N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase involved in methylation of ribosomal protein L3 gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2750 YPO2751 YPO2751 aroC aroC 3083736 3084821 + chorismate synthase catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2751 YPO2752 YPO2752 mepA mepA 3084827 3085654 + penicillin-insensitive murein endopeptidase D-alanyl-D-alanine endopeptidase%3B functions in hydrolyzing cell wall peptidoglycan%3B similar to LAS metallopeptidases%3B forms a dimer in periplasm gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2752 YPO2753 YPO2753 yfcA yfcA 3085658 3086464 + hypothetical protein gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2753 YPO2754 YPO2754 YPO2754 3086564 3087106 + hypothetical protein gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2754 YPO2755 YPO2755 YPO2755 3087164 3087442 + hypothetical protein gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2755 YPO2756 YPO2756 mnmC mnmC 3087620 3089689 - 5-methylaminomethyl-2-thiouridine methyltransferase catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2756 YPO2757 YPO2757 fabB fabB 3089861 3091084 + 3-oxoacyl-ACP synthase FabB%2C beta-Ketoacyl-ACP synthase I%2C KASI%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2757 YPO2758 YPO2758 YPO2758 3091492 3092187 - aspartate/glutamate racemase gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2758 YPO2759 YPO2759 mrpA mrpA 3092975 3093505 + mannose-resistant fimbrial protein gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2759 YPO2760 YPO2760 flk flk 3093847 3094884 - flagella biosynthesis regulator in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system%3B lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm%3B inner membrane-anchored protein gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2760 YPO2761 YPO2761 YPO2761 3095169 3096086 - hypothetical protein gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2761 YPO2762 YPO2762 YPO2762 3096312 3097097 + AraC family transcriptional regulator gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2762 YPO2763 YPO2763 pdxB pdxB 3097144 3098271 + D-isomer specific 2-hydroxyacid dehydrogenase gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2763 YPO2764 YPO2764 tnp tnp 3098415 3098873 - transposase for the IS1541 insertion element gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2764 YPO2765 YPO2765 asd asd 3099152 3100162 + semialdehyde dehydrogenase gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2765 YPO2766 YPO2766 truA truA 3100249 3101043 + tRNA pseudouridine synthase A mediates pseudouridylation (positions 38%2C 39%2C 40) at the tRNA anticodon region which contributes to the structural stability gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2766 YPO2767 YPO2767 dedA dedA 3101200 3101862 + hypothetical protein gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2767 YPO2768 YPO2768 accD accD 3102093 3103007 + acetyl-CoA carboxylase subunit beta catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer of AccA2D2 subunits gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2768 YPO2769 YPO2769 folC folC 3103256 3104560 + bifunctional folylpolyglutamate synthase/ dihydrofolate synthase gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2769 YPO2770 YPO2770 dedD dedD 3104680 3105402 + hypothetical protein gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2770 YPO2771 YPO2771 cvpA cvpA 3105714 3106223 + colicin V production protein membrane protein required for colicin V production gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2771 YPO2772 YPO2772 purF purF 3106236 3107753 + amidophosphoribosyltransferase Catalyzes first step of the de novo purine nucleotide biosynthetic pathway gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2772 YPO2773 YPO2773 ubiX ubiX 3108000 3108572 + 3-octaprenyl-4-hydroxybenzoate carboxy-lyase catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2773 YPO2774 YPO2774 hisJ hisJ 3109091 3109879 + histidine-binding periplasmic protein gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2774 YPO2775 YPO2775 hisQ hisQ 3109982 3110668 + histidine transport system permease HisQ gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2775 YPO2776 YPO2776 hisM hisM 3110665 3111381 + histidine transport system permease HisM gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2776 YPO2777 YPO2777 hisP hisP 3111395 3112192 + histidine/lysine/arginine/ornithine transporter subunit gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2777 YPO2778 YPO2778 YPO2778 3112316 3113224 - hypothetical protein gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2778 YPO2779 YPO2779 YPO2779 3113572 3114270 + hypothetical protein gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2779 YPO2780 YPO2780 YPO2780 3114471 3115046 + phosphodiesterase gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2780 YPO2781 YPO2781 YPO2781 3115268 3115816 + hypothetical protein gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2781 YPO2782 YPO2782 ulaA ulaA 3115933 3117189 - PTS system ascorbate-specific transporter subunit IIC membrane component%3B functions with enzymes IIB (sgaB%3B ulaB) and IIA (sgaA%3B ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate%3B sgaTBA are regulated by yifQ as well as Crp and Fnr gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2782 YPO2783 YPO2783 y1062 y1062 3117329 3118537 + transposase for the IS285 insertion element gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2783 YPO2784 YPO2784 pbpC pbpC 3118574 3120100 + gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2784 YPO2785 YPO2785 nlp nlp 3120316 3120561 - DNA-binding protein gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2785 YPO2788 YPO2788 YPO2788 3121234 3121815 + gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2788 YPO2790 YPO2790 YPO2790 3122083 3122484 + hypothetical protein gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2790 YPO2792 YPO2792 YPO2792 3122738 3123118 + hypothetical protein gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2792 YPO2793 YPO2793 YPO2793 3123130 3123702 - hypothetical protein gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2793 YPO2794 YPO2794 YPO2794 3123726 3123977 - hypothetical protein no significant database hits gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2794 YPO2795 YPO2795 YPO2795 3124016 3124255 - hypothetical protein gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2795 YPO2796 YPO2796 yapC yapC 3125064 3126980 + autotransporter protein gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2796 YPO2797 YPO2797 YPO2797 3127515 3128096 + hypothetical protein no significant database hits gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2797 YPO2799 YPO2799 y1062 y1062 3128498 3129706 - transposase for the IS285 insertion element gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2799 YPO2801 YPO2801 YPO2801 3130158 3132365 + hypothetical protein gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2801 YPO2802 YPO2802 YPO2802 3132358 3132888 + hypothetical protein gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2802 YPO2803 YPO2803 bglB bglB 3133047 3135428 + beta-glucosidase gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2803 YPO2804 YPO2804 YPO2804 3135507 3137135 - hypothetical protein no significant database hits gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2804 YPO2805 YPO2805 YPO2805 3137566 3138459 + aldo/keto reductase gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2805 YPO2806 YPO2806 YPO2806 3138485 3139474 + aldo/keto reductase gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2806 YPO2807 YPO2807 ptxR ptxR 3139529 3140422 - LysR family transcriptional regulator gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2807 YPO2808 YPO2808 y1093 y1093 3140516 3141538 + transposase for insertion sequence IS100 gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2808 YPO2809 YPO2809 YPO2809 3141535 3142317 + transposase/IS protein ypmt1.57c gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2809 YPO2811 YPO2811 YPO2811 3142684 3142989 - hypothetical protein gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2811 YPO2812 YPO2812 YPO2812 3143086 3143457 - hypothetical protein Doubtful CDS%2C no significant database matches gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2812 YPO2813 YPO2813 ynbD ynbD 3143469 3144788 - dual specificity phosphatase gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2813 YPO2814 YPO2814 YPO2814 3144781 3146544 - hypothetical protein gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2814 YPO2815 YPO2815 YPO2815 3146541 3147173 - acyltransferase gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2815 YPO2816 YPO2816 ynbB ynbB 3147183 3148112 - phosphatidate cytidylyltransferase gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2816 YPO2817 YPO2817 YPO2817 3148105 3148707 - CDP-alcohol phosphatidyltransferase gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2817 YPO2820 YPO2820 YPO2820 3149886 3150224 + hypothetical protein no significant database hits gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2820 YPO2821 YPO2821 YPO2821 3150209 3150857 + gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2821 YPO2822 YPO2822 YPO2822 3150971 3151171 + hypothetical protein no significant database hits gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2822 YPO2823 YPO2823 YPO2823 3151430 3151612 + regulatory protein gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2823 YPO2824 YPO2824 folD folD 3151967 3152833 + bifunctional 5%2C10-methylene-tetrahydrofolate dehydrogenase/ 5%2C10-methylene-tetrahydrofolate cyclohydrolase catalyzes the formation of 5%2C10-methenyltetrahydrofolate from 5%2C10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5%2C10-methenyltetrahydrofolate gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2824 YPO2825 YPO2825 YPO2825 3152848 3153060 + hypothetical protein gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2825 YPO2826 YPO2826 tnp tnp 3153207 3153665 - transposase for the IS1541 insertion element gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2826 YPO2827 YPO2827 upp upp 3153841 3154467 - uracil phosphoribosyltransferase Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2827 YPO2828 YPO2828 purI purI 3154864 3155907 + phosphoribosylaminoimidazole synthetase catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2828 YPO2829 YPO2829 purN purN 3156022 3156660 + phosphoribosylglycinamide formyltransferase glycinamide ribonucleotide transformylase%3B GAR Tfase%3B catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate%3B PurN requires formyl folate for the reaction unlike PurT which uses formate gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2829 YPO2830 YPO2830 speG speG 3156889 3157434 + spermidine acetyltransferase gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2830 YPO2831 YPO2831 fliB fliB 3157531 3158717 - gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2831 YPO2833 YPO2833 pstb pstb 3158945 3159757 - phosphate transporter ATP-binding protein ATP-binding protein%3B PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2833 YPO2834 YPO2834 pstA pstA 3159785 3161497 - phosphate transporter permease gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2834 YPO2835 YPO2835 pstC pstC 3161497 3163746 - phosphate transporter permease gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2835 YPO2836 YPO2836 ppk ppk 3163999 3166062 + polyphosphate kinase catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2836 YPO2837 YPO2837 ppx ppx 3166073 3167632 + exopolyphosphatase gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2837 YPO2838 YPO2838 yfgG yfgG 3167744 3167956 + hypothetical protein gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2838 YPO2839 YPO2839 mgtE mgtE 3168008 3169483 + divalent cation transport protein gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2839 YPO2840 YPO2840 YPO2840 3169623 3170975 + chaperone gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2840 YPO2841 YPO2841 YPO2841 3171247 3172095 - ABC transporter permease gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2841 YPO2842 YPO2842 YPO2842 3172157 3173422 - ABC transporter permease gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2842 YPO2843 YPO2843 YPO2843 3173469 3174497 - transport system periplasmic protein gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2843 YPO2844 YPO2844 goaG goaG 3174550 3175863 - 4-aminobutyrate aminotransferase catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2844 YPO2845 YPO2845 YPO2845 3176021 3177526 + GntR family transcriptional regulator gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2845 YPO2846 YPO2846 YPO2846 3177909 3178994 + ABC transporter ATP-binding protein gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2846 YPO2847 YPO2847 yegM yegM 3179358 3180692 + multidrug efflux system subunit MdtA Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2847 YPO2848 YPO2848 yegN yegN 3180692 3183850 + multidrug efflux system subunit MdtB Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2848 YPO2849 YPO2849 yegO yegO 3183847 3186921 + multidrug efflux system subunit MdtC Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC%3B confers resistance against novobiocin and deoxycholate gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2849 YPO2850 YPO2850 yegB yegB 3186955 3188352 + multidrug efflux system protein MdtE gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2850 YPO2851 YPO2851 baeS baeS 3188383 3189764 + gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2851 YPO2853 YPO2853 baeR baeR 3189777 3190496 + DNA-binding transcriptional regulator BaeR response regulator in two-component regulatory system with BaeS%3B regulator of RNA synthesis%2C flagellar biosynthesis%2C chemotaxis and transport gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2853 YPO2854 YPO2854 YPO2854 3190633 3190971 + hypothetical protein gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2854 YPO2855 YPO2855 YPO2855 3191246 3192640 + protease gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2855 YPO2856 YPO2856 YPO2856 3193276 3194166 + lipid kinase cytosolic protein with phosphatidylglycerol kinase activity%3B undetermined physiological role gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2856 YPO2857 YPO2857 YPO2857 3194433 3194897 - hypothetical protein gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2857 YPO2858 YPO2858 YPO2858 3195291 3196061 + hypothetical protein gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2858 YPO2859 YPO2859 thiD thiD 3196123 3196923 - phosphomethylpyrimidine kinase catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2859 YPO2860 YPO2860 YPO2860 3197433 3197912 + hypothetical protein No significant database matches. CDS DNA has a low GC content%2C 32.91%25. Similar to YPO3895 (56.6%25 identity in 159 aa overlap)%2C YPO3935 (55.7%25 identity in 158 aa overlap)%2C YPO3894 (53.8%25 identity in 160 aa overlap). C-terminal region of the CDS is similar to YPO3893 (55.7%25 identity in 122 aa overlap) gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2860 YPO2861 YPO2861 YPO2861 3197971 3198225 + gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2861 YPO2862 YPO2862 y1062 y1062 3198261 3199469 - transposase for the IS285 insertion element gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2862 YPO2863 YPO2863 YPO2863 3199551 3200195 + hypothetical protein gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2863 YPO2864 YPO2864 YPO2864 3200192 3200587 + hypothetical protein No significant database matches. CDS DNA has a low GC content%2C 27.02%25. Similar to YPO2866 (65.6%25 identity in 131 aa overlap)%2C YPO2867 (62.9%25 identity in 132 aa overlap) and YPO2865 (61.8%25 identity in 131 aa overlap) gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2864 YPO2865 YPO2865 YPO2865 3200651 3201046 + hypothetical protein gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2865 YPO2866 YPO2866 YPO2866 3201084 3201503 + hypothetical protein gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2866 YPO2867 YPO2867 YPO2867 3201567 3201965 + hypothetical protein gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2867 YPO2868 YPO2868 YPO2868 3201989 3202468 + hypothetical protein gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2868 YPO2869 YPO2869 tnp tnp 3202628 3203086 - transposase for the IS1541 insertion element gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2869 YPO2870 YPO2870 guaA guaA 3203461 3205038 - GMP synthase contains glutamine-hydrolyzing domain and glutamine amidotransferase%3B GMP-binding domain%3B functions to produce GMP from XMP in the IMP pathway gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2870 YPO2871 YPO2871 guaB guaB 3205218 3206681 - inosine 5'-monophosphate dehydrogenase catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2871 YPO2872 YPO2872 xseA xseA 3206851 3208230 + exodeoxyribonuclease VII large subunit bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2872 YPO2873 YPO2873 YPO2873 3208363 3208587 - hypothetical protein gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2873 YPO2874 YPO2874 YPO2874 3208636 3209592 - hypothetical protein gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2874 YPO2875 YPO2875 engA engA 3209939 3211426 - GTP-binding protein EngA EngA%3B essential Neisserial GTPase%3B synchronizes cellular events by interacting with multiple targets with tandem G-domains%3B overexpression in Escherichia coli suppresses rrmJ mutation%3B structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2875 YPO2876 YPO2876 yfgL yfgL 3211574 3212755 - outer membrane protein assembly complex subunit YfgL with YaeT%2C YfiO%2C and NlpB forms a complex involved in outer membrane protein biogenesis gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2876 YPO2877 YPO2877 yfgM yfgM 3212767 3213402 - hypothetical protein gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2877 YPO2878 YPO2878 hisS hisS 3213416 3214690 - histidyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class II aminoacyl-tRNA synthetase%3B forms homodimers%3B some organisms have a paralogous gene%2C hisZ%2C that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2878 YPO2879 YPO2879 ispG ispG 3214899 3216026 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase catalyzes the conversion of 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate%3B involved in isoprenoid synthesis gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2879 YPO2880 YPO2880 yfgA yfgA 3216088 3217125 - cytoskeletal protein RodZ gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2880 YPO2881 YPO2881 YPO2881 3217115 3217864 - fimbrial biogenesis protein gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2881 YPO2882 YPO2882 YPO2882 3218018 3219214 - ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503 methyltransferase%3B methylates the C2 position of the A2530 nucleotide in 23S rRNA%3B may be involved in antibiotic resistance gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2882 YPO2883 YPO2883 ndk ndk 3219476 3219904 - nucleoside diphosphate kinase catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2883 YPO2884 YPO2884 YPO2884 3220231 3222651 - hypothetical protein gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2884 YPO2886 YPO2886 yapA yapA 3223437 3227729 + autotransporter protein gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2886 YPO2887 YPO2887 yapB yapB 3228287 3231796 + gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2887 YPO2888 YPO2888 YPO2888 3232069 3233022 - enhanced serine sensitivity protein SseB enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2888 YPO2889 YPO2889 pepB pepB 3233101 3234399 - aminopeptidase catalyzes the removal of an N-terminal amino acid from a peptide or arylamide gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2889 YPO2890 YPO2890 YPO2890 3234539 3234739 - hypothetical protein gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2890 YPO2891 YPO2891 fdx fdx 3234769 3235104 - adrenodoxin family ferredoxin gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2891 YPO2892 YPO2892 hscA hscA 3235107 3237059 - chaperone protein HscA involved in the maturation of iron-sulfur cluster-containing proteins gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2892 YPO2893 YPO2893 hscB hscB 3237302 3237826 - co-chaperone HscB J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone%3B may function in biogenesis of iron-sulfur proteins gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2893 YPO2894 YPO2894 iscA iscA 3237937 3238260 - iron-sulfur cluster assembly protein forms iron-sulfur clusters of ferredoxin [2FE-2S]%3B binds iron in the presence of the thioredoxin reductase system%3B forms homodimers and tetramers%3B similar to SufA protein gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2894 YPO2895 YPO2895 nifU nifU 3238530 3238916 - scaffold protein gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2895 YPO2896 YPO2896 iscS iscS 3238947 3240176 - cysteine desulfurase catalyzes the removal of elemental sulfur from cysteine to produce alanine%3B involved in NAD biosynthesis gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2896 YPO2897 YPO2897 YPO2897 3240230 3240724 - DNA-binding transcriptional regulator IscR regulates the expression of the iscRSUA operon gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2897 YPO2898 YPO2898 YPO2898 3240880 3241653 - SpoU family rRNA methylase gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2898 YPO2899 YPO2899 suhB suhB 3241772 3242575 + inositol monophosphatase gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2899 YPO2900 YPO2900 tnp tnp 3242779 3243237 + transposase for the IS1541 insertion element gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2900 YPO2901 YPO2901 YPO2901 3243384 3244406 - hypothetical protein gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2901 YPO2902 YPO2902 YPO2902 3244397 3245071 - hypothetical protein gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2902 YPO2903 YPO2903 YPO2903 3245213 3246574 + stationary phase inducible protein CsiE gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2903 YPO2904 YPO2904 hcaT hcaT 3246571 3247728 - 3-phenylpropionic acid transporter transporter of 3-phenylpropionate across the inner membrane%3B member of the major facilitator superfamily of transporters gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2904 YPO2905 YPO2905 ail ail 3248080 3248628 - attachment invasion locus protein gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2905 YPO2907 YPO2907 glyA glyA 3249072 3250325 - serine hydroxymethyltransferase catalyzes the reaction of glycine with 5%2C10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2907 YPO2908 YPO2908 hmp hmp 3250866 3252056 + nitric oxide dioxygenase flavohemoprotein%3B catalyzes the formation of nitrate from nitric oxide%3B can also catalyze the reduction of dihydropteridine gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2908 YPO2909 YPO2909 YPO2909 3252487 3253417 + gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2909 YPO2911 YPO2911 glnB glnB 3253589 3253927 - nitrogen regulatory protein P-II 1 indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2911 YPO2912 YPO2912 nadE nadE 3253942 3255564 - NAD synthetase NH(3)-dependent%3B catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2912 YPO2914 YPO2914 YPO2914 3255724 3257061 - two-component system response regulator gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2914 YPO2915 YPO2915 YPO2915 3257024 3258019 - hypothetical protein gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2915 YPO2916 YPO2916 YPO2916 3258095 3259546 - two-component system sensor kinase gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2916 YPO2917 YPO2917 tnp tnp 3259752 3260210 - transposase for the IS1541 insertion element gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2917 YPO2918 YPO2918 YPO2918 3261437 3261997 + hypothetical protein gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2918 YPO2921 YPO2921 purL purL 3263310 3267200 - phosphoribosylformylglycinamidine synthase catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2921 YPO2922 YPO2922 YPO2922 3267516 3268976 + transglycosylase YfhD%3B uncharacterized member of the transglycosylase slt family%3B part of the rob operon%2C which plays a role in cellular resistance to antibiotics%2C bactericidal agents%2C and organic solvents%3B unknown function gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2922 YPO2923 YPO2923 YPO2923 3269085 3269687 - tRNA-specific adenosine deaminase gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2923 YPO2924 YPO2924 yfhB yfhB 3269758 3270405 - hypothetical protein gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2924 YPO2925 YPO2925 murQ murQ 3270680 3271567 - N-acetylmuramic acid-6-phosphate etherase catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2925 YPO2926 YPO2926 YPO2926 3271775 3272614 + DNA-binding transcriptional regulator gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2926 YPO2927 YPO2927 fdx fdx 3272776 3273036 + [4Fe-4S] ferredoxin gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2927 YPO2928 YPO2928 tnp tnp 3273192 3273650 - transposase for the IS1541 insertion element gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2928 YPO2929 YPO2929 acpS acpS 3273852 3274232 - 4'-phosphopantetheinyl transferase Catalyzes the formation of holo-ACP%2C which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2929 YPO2930 YPO2930 pdxJ pdxJ 3274232 3274963 - pyridoxine 5'-phosphate synthase involved in the de novo synthesis of pyridoxine (Vitamin B6) gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2930 YPO2931 YPO2931 YPO2931 3275153 3275935 - transposase/IS protein ypmt1.57c gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2931 YPO2932 YPO2932 y1093 y1093 3275932 3276954 - transposase for insertion sequence IS100 gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2932 YPO2933 YPO2933 YPO2933 3276968 3277636 - gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2933 YPO2934 YPO2934 YPO2934 3277633 3278982 - hypothetical protein gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2934 YPO2935 YPO2935 YPO2935 3278986 3279546 - hypothetical protein gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2935 YPO2937 YPO2937 YPO2937 3279799 3280284 - hypothetical protein gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2937 YPO2938 YPO2938 YPO2938 3280610 3282112 - hypothetical protein gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2938 YPO2939 YPO2939 YPO2939 3282136 3282660 - hypothetical protein gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2939 YPO2940 YPO2940 YPO2940 3282765 3283319 - fimbrial protein gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2940 YPO2942 YPO2942 y1062 y1062 3284573 3285781 + transposase for the IS285 insertion element gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2942 YPO2944 YPO2944 YPO2944 3287481 3288260 - pili chaperone protein gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2944 YPO2945 YPO2945 YPO2945 3288399 3288944 - frimbrial protein gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2945 YPO2946 YPO2946 clpB5 clpB5 3289145 3291820 - Clp ATPase gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2946 YPO2947 YPO2947 YPO2947 3292603 3294483 + hypothetical protein gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2947 YPO2948 YPO2948 YPO2948 3294483 3295508 + hypothetical protein gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2948 YPO2949 YPO2949 YPO2949 3295607 3296788 + hypothetical protein gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2949 YPO2950 YPO2950 YPO2950 3296795 3297826 + fimbrial protein gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2950 YPO2951 YPO2951 YPO2951 3297866 3299203 + hypothetical protein no significant database hits gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2951 YPO2952 YPO2952 YPO2952 3299200 3299883 + hypothetical protein gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2952 YPO2953 YPO2953 YPO2953 3299884 3301566 + hypothetical protein gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2953 YPO2954 YPO2954 YPO2954 3301563 3302045 + hypothetical protein no significant database hits gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2954 YPO2955 YPO2955 YPO2955 3302403 3303005 - LuxR family transcriptional regulator gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2955 YPO2957 YPO2957 mltB mltB 3304260 3305372 - murein hydrolase B membrane-bound lytic murein transglycosylase B%3B catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2957 YPO2958 YPO2958 sfuA sfuA 3305683 3306702 + iron(III)-binding protein gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2958 YPO2959 YPO2959 sfuB sfuB 3306758 3308344 + iron ABC transporter permease gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2959 YPO2960 YPO2960 sfuC sfuC 3308341 3309390 + iron(III)-transport ATP-binding protein gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2960 YPO2961 YPO2961 YPO2961 3309463 3309987 - hypothetical protein gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2961 YPO2962 YPO2962 YPO2962 3310448 3310933 + hypothetical protein gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2962 YPO2963 YPO2963 YPO2963 3311163 3312011 - hypothetical protein gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2963 YPO2965 YPO2965 dmsA dmsA 3312842 3315268 + dimethyl sulfoxide reductase subunit A gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2965 YPO2966 YPO2966 dmsB dmsB 3315280 3315897 + dimethyl sulfoxide reductase subunit B gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2966 YPO2967 YPO2967 dmsC dmsC 3315899 3316675 + dimethyl sulfoxide reductase subunit C gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2967 YPO2968 YPO2968 YPO2968 3317088 3317753 + hypothetical protein gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2968 YPO2969 YPO2969 YPO2969 3317750 3318319 + (Fe-S)-binding protein gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2969 YPO2970 YPO2970 YPO2970 3318565 3319221 - lipoprotein gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2970 YPO2971 YPO2971 YPO2971 3319218 3319574 - lipoprotein gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2971 YPO2972 YPO2972 YPO2972 3319601 3320272 - lipoprotein gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2972 YPO2973 YPO2973 YPO2973 3320862 3321293 + hypothetical protein gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2973 YPO2974 YPO2974 YPO2974 3321388 3321912 - B-type cytochrome gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2974 YPO2975 YPO2975 YPO2975 3322157 3323392 - aminotransferase gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2975 YPO2976 YPO2976 YPO2976 3323658 3324905 + hypothetical protein gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2976 YPO2977 YPO2977 glk glk 3324983 3325954 - glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2977 YPO2978 YPO2978 YPO2978 3326135 3326662 - hypothetical protein gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2978 YPO2979 YPO2979 YPO2979 3326714 3327592 + LysR family transcriptional regulator gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2979 YPO2980 YPO2980 YPO2980 3327728 3328717 + ion channel protein gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2980 YPO2981 YPO2981 YPO2981 3328888 3329301 + hypothetical protein gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2981 YPO2982 YPO2982 mntH mntH 3329394 3330623 - manganese transport protein MntH gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2982 YPO2983 YPO2983 cru cru 3331058 3332242 + nucleoside permease gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2983 YPO2984 YPO2984 gltX gltX 3333476 3334891 + glutamyl-tRNA synthetase Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2984 YPO2985 YPO2985 tnp tnp 3335084 3335542 + transposase for the IS1541 insertion element gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2985 YPO2986 YPO2986 YPO2986 3336256 3336861 + hypothetical protein gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2986 YPO2987 YPO2987 YPO2987 3336993 3337340 + hypothetical protein gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2987 YPO2988 YPO2988 YPO2988 3337441 3337656 - hypothetical protein gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2988 YPO2989 YPO2989 ligA ligA 3337676 3339688 - NAD-dependent DNA ligase LigA this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction%3B essential for DNA replication and repair of damaged DNA%3B similar to ligase LigB gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2989 YPO2990 YPO2990 zipA zipA 3339779 3340765 - cell division protein ZipA interacts with cell division protein FitsZ and may be required to anchor septal ring structure gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2990 YPO2991 YPO2991 cysZ cysZ 3341014 3341748 + sulfate transport protein CysZ role in sulfur assimilation gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2991 YPO2992 YPO2992 cysK cysK 3341905 3342873 + cysteine synthase A CysK%3B forms a complex with serine acetyltransferase CysE%3B functions in cysteine biosynthesis gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2992 YPO2993 YPO2993 ptsH ptsH 3343372 3343629 + PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2993 YPO2994 YPO2994 ptsI ptsI 3343678 3345405 + phosphoenolpyruvate-protein phosphotransferase Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2994 YPO2995 YPO2995 crr crr 3345454 3345963 + PTS system glucose-specific transporter subunit functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system%3B functions in the transport and phosphorylation of glucose gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2995 YPO2996 YPO2996 tnp tnp 3346106 3346564 - transposase for the IS1541 insertion element gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2996 YPO2997 YPO2997 YPO2997 3346834 3348183 - two-component system sensor kinase gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2997 YPO2998 YPO2998 YPO2998 3348209 3348892 - two-component system response regulator gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2998 YPO2999 YPO2999 YPO2999 3349080 3350285 + HlyD family secretion protein gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2999 YPO3000 YPO3000 YPO3000 3350289 3352325 + ABC transporter ATP-binding protein gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3000 YPO3001 YPO3001 YPO3001 3352580 3354226 - pyridine nucleotide-disulphide oxidoreductase gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3001 YPO3002 YPO3002 YPO3002 3354286 3355746 - permease gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3002 YPO3003 YPO3003 YPO3003 3355743 3355940 - hypothetical protein gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3003 YPO3004 YPO3004 YPO3004 3356083 3357054 - hypothetical protein gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3004 YPO3006 YPO3006 YPO3006 3357336 3358517 - aminotransferase gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3006 YPO3007 YPO3007 YPO3007 3359114 3360643 + hypothetical protein gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3007 YPO3008 YPO3008 YPO3008 3360876 3362420 + two-component sensor histidine kinase gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3008 YPO3009 YPO3009 YPO3009 3362417 3363124 + two-component response regulator gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3009 YPO3010 YPO3010 YPO3010 3363505 3364737 - hypothetical protein gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3010 YPO3011 YPO3011 cysM cysM 3364982 3365860 - cysteine synthase B catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3011 YPO3012 YPO3012 cysA cysA 3366031 3367122 - sulfate/thiosulfate transporter subunit gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3012 YPO3013 YPO3013 cysW cysW 3367112 3367987 - sulfate/thiosulfate transporter permease Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3013 YPO3014 YPO3014 cysT cysT 3367987 3368820 - sulfate/thiosulfate transporter subunit gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3014 YPO3015 YPO3015 cysP cysP 3368820 3369857 - thiosulfate transporter subunit gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3015 YPO3016 YPO3016 nanT nanT 3370172 3371704 - sialic acid transporter gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3016 YPO3017 YPO3017 YPO3017 3372309 3373187 - rpiR family transcriptional regulator gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3017 YPO3018 YPO3018 YPO3018 3373184 3373336 - hypothetical protein doubtful CDS with no significant database matches. Very low %25G+C gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3018 YPO3019 YPO3019 YPO3019 3373376 3373831 - hypothetical protein gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3019 YPO3020 YPO3020 YPO3020 3373928 3374800 - N-acetylmannosamine kinase catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3020 YPO3021 YPO3021 YPO3021 3375069 3376197 + gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3021 YPO3023 YPO3023 YPO3023 3376403 3377104 + N-acetylmannosamine-6-phosphate 2-epimerase Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3023 YPO3024 YPO3024 nanA nanA 3377167 3378060 + N-acetylneuraminate lyase gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3024 YPO3025 YPO3025 YPO3025 3378158 3379057 - hypothetical protein gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3025 YPO3026 YPO3026 yfeY yfeY 3379235 3379846 - hypothetical protein gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3026 YPO3027 YPO3027 ygiW ygiW 3380205 3380618 + hypothetical protein gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3027 YPO3028 YPO3028 YPO3028 3381105 3383384 + autotransporter gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3028 YPO3029 YPO3029 YPO3029 3383476 3383892 - hypothetical protein gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3029 YPO3030 YPO3030 YPO3030 3383998 3384183 + hypothetical protein no significant database hits gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3030 YPO3031 YPO3031 YPO3031 3384365 3384790 - acetyltransferase gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3031 YPO3032 YPO3032 hemF hemF 3385073 3386002 + coproporphyrinogen III oxidase catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3032 YPO3033 YPO3033 YPO3033 3386002 3386460 + hypothetical protein gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3033 YPO3034 YPO3034 maeB maeB 3386611 3388896 - malic enzyme NADP-dependent%3B catalyzes the oxidative decarboxylation of malate to form pyruvate%3B decarboxylates oxaloacetate gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3034 YPO3035 YPO3035 YPO3035 3389092 3389688 - hypothetical protein gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3035 YPO3036 YPO3036 napC napC 3389872 3390474 - cytochrome c-type protein NapC with NapABDFGH functions as a nitrate reductase%3B NapC functions as an electron shuttle between NapAB and NapGH or quinone gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3036 YPO3037 YPO3037 napB napB 3390499 3390966 - citrate reductase cytochrome c-type subunit small subunit of periplasmic nitrate reductase%3B receives electrons from the membrane-bound NapC and passes them to NapA gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3037 YPO3038 YPO3038 napA napA 3391049 3393541 - nitrate reductase catalytic subunit periplasmic%3B catalytic subunit%3B with NapBC catalyzes the reduction of nitrate to nitrite%3B NapAB receives electrons from NapC gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3038 YPO3039 YPO3039 napD napD 3393538 3393804 - assembly protein for periplasmic nitrate reductase gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3039 YPO3040 YPO3040 napF napF 3393794 3394297 - ferredoxin-type protein NapF gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3040 YPO3041 YPO3041 narP narP 3395130 3395759 + nitrate/nitrite response regulator protein NarP gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3041 YPO3042 YPO3042 YPO3042 3395772 3396050 - hypothetical protein gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3042 YPO3043 YPO3043 YPO3043 3396465 3399596 + aminoglycoside/multidrug efflux system gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3043 YPO3044 YPO3044 YPO3044 3399827 3400411 + hypothetical protein gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3044 YPO3045 YPO3045 ybcI ybcI 3400700 3401248 + hypothetical protein gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3045 YPO3046 YPO3046 YPO3046 3402002 3403177 - sulfatase modifier protein gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3046 YPO3047 YPO3047 ydeN ydeN 3403235 3404908 - sulfatase gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3047 YPO3048 YPO3048 YPO3048 3405386 3406456 - ABC transporter ATP-binding protein gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3048 YPO3049 YPO3049 YPO3049 3406449 3408218 - binding protein-dependent transporter inner membrane protein gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3049 YPO3050 YPO3050 YPO3050 3408313 3409401 - hypothetical protein gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3050 YPO3051 YPO3051 YPO3051 3409685 3410185 + hypothetical protein gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3051 YPO3052 YPO3052 YPO3052 3410345 3410743 + hypothetical protein gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3052 YPO3053 YPO3053 dapE dapE 3410745 3411872 + succinyl-diaminopimelate desuccinylase dapE-encoded N-succinyl-L%2CL-diaminopimelic acid desuccinylase (DapE)%2C catalyzes the hydrolysis of N-succinyl-L%2CLdiaminopimelate L%2CL-SDAP to L%2CL-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3053 YPO3054 YPO3054 YPO3054 3411869 3412546 + carboxypeptidase gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3054 YPO3055 YPO3055 YPO3055 3412614 3412808 + hypothetical protein gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3055 YPO3056 YPO3056 YPO3056 3413013 3415112 - acetyltransferase gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3056 YPO3057 YPO3057 yeaL yeaL 3415114 3415566 - hypothetical protein gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3057 YPO3058 YPO3058 YPO3058 3415660 3416526 - hypothetical protein gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3058 YPO3059 YPO3059 purC purC 3416745 3417458 - phosphoribosylaminoimidazole-succinocarboxamide synthase catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis%3B SAICAR synthase gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3059 YPO3060 YPO3060 tnp tnp 3417606 3418064 - transposase for the IS1541 insertion element gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3060 YPO3061 YPO3061 dapX dapX 3418239 3419297 - lipoprotein gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3061 YPO3062 YPO3062 dapA dapA 3419315 3420196 - dihydrodipicolinate synthase catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3062 YPO3063 YPO3063 gcvR gcvR 3420361 3420930 + glycine cleavage system transcriptional repressor negative transcriptional regulator of the gcvTHP operon gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3063 YPO3064 YPO3064 bcp bcp 3420930 3421403 + thioredoxin-dependent thiol peroxidase bacterioferritin comigratory protein%3B thiol peroxidase%3B thioredoxin-dependent%3B hydroperoxide peroxidase%3B in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide%3B contains an active site cysteine gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3064 YPO3065 YPO3065 YPO3065 3421647 3422066 - hypothetical protein no significant database matches gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3065 YPO3066 YPO3066 YPO3066 3422070 3422765 - hypothetical protein no significant database hits. Similar to YPO1619 (53%25 identity in 166 aa overlap) gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3066 YPO3067 YPO3067 YPO3067 3423103 3423276 + hypothetical protein no significant database hits gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3067 YPO3068 YPO3068 perM perM 3423365 3424429 - hypothetical protein gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3068 YPO3069 YPO3069 YPO3069 3424784 3426244 + hypothetical protein gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3069 YPO3070 YPO3070 yfgD yfgD 3426351 3426707 + arsenate reductase gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3070 YPO3071 YPO3071 YPO3071 3426919 3427638 - DNA replication initiation factor controls initiation of DNA replication by inhibiting re-initiation of replication%2C promotes hydrolysis of DnaA-bound ATP gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3071 YPO3072 YPO3072 tnp tnp 3427814 3428272 - transposase for the IS1541 insertion element gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3072 YPO3073 YPO3073 cysS cysS 3428619 3430004 - cysteinyl-tRNA synthetase catalyzes a two-step reaction%3B charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3073 YPO3074 YPO3074 ppiB ppiB 3430215 3430709 + peptidyl-prolyl cis-trans isomerase B gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3074 YPO3075 YPO3075 YPO3075 3430720 3431442 + UDP-2%2C3-diacylglucosamine hydrolase catalyzes the formation of 2%2C3%3Ddiacylglucosamine 1-phosphate from UDP-2%2C3%3Ddiacylglucosamine gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3075 YPO3076 YPO3076 purE purE 3431738 3432262 + phosphoribosylaminoimidazole carboxylase catalytic subunit PurE gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3076 YPO3077 YPO3077 purK purK 3432259 3433323 + phosphoribosylaminoimidazole carboxylase ATPase subunit With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3077 YPO3078 YPO3078 ybbP ybbP 3433367 3435796 - permease gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3078 YPO3079 YPO3079 ybbA ybbA 3435793 3436479 - ABC transporter ATP-binding protein YbbA gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3079 YPO3080 YPO3080 tesA tesA 3436447 3437085 + multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3080 YPO3081 YPO3081 ybbO ybbO 3437472 3438248 + short chain dehydrogenase gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3081 YPO3082 YPO3082 ybbN ybbN 3438325 3439194 + thioredoxin gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3082 YPO3083 YPO3083 YPO3083 3439389 3440303 + hypothetical protein gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3083 YPO3084 YPO3084 ybbJ ybbJ 3440306 3440755 + hypothetical protein gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3084 YPO3085 YPO3085 cueR cueR 3440864 3441283 - regulatory protein gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3085 YPO3086 YPO3086 copA copA 3441490 3444375 + copper exporting ATPase gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3086 YPO3087 YPO3087 YPO3087 3444896 3445705 + hypothetical protein gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3087 YPO3088 YPO3088 YPO3088 3445969 3446448 + hypothetical protein gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3088 YPO3089 YPO3089 YPO3089 3446740 3447024 + hypothetical protein no significant database hits gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3089 YPO3090 YPO3090 ushA ushA 3447128 3448783 - gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3090 YPO3093 YPO3093 fsr fsr 3449065 3450279 + membrane efflux protein gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3093 YPO3094 YPO3094 rosB rosB 3450514 3452205 + cation:proton antiport protein YbaL%3B member of the CPA-2 family of antiporters%3B uncharacterized protein gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3094 YPO3095 YPO3095 gsk gsk 3452302 3453606 - inosine-guanosine kinase gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3095 YPO3096 YPO3096 wzz wzz 3453810 3454961 - ferric enterobactin transport protein FepE part of the ferric enterobactin transport system%3B necessary for enetrobactin uptake gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3096 YPO3097 YPO3097 manB manB 3455009 3456382 - phosphomannomutase gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3097 YPO3098 YPO3098 wbyL wbyL 3456387 3457130 - glycosyltransferase gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3098 YPO3099 YPO3099 manC manC 3457133 3458545 - mannose-1-phosphate guanylyltransferase gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3099 YPO3100 YPO3100 fcL fcL 3458733 3459697 - gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3100 YPO3102 YPO3102 gmd gmd 3459703 3460825 - gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3102 YPO3104 YPO3104 wbyK wbyK 3460841 3461854 - mannosyltransferase gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3104 YPO3105 YPO3105 wzy wzy 3462103 3463324 - gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3105 YPO3107 YPO3107 wbyJ wbyJ 3463321 3464463 - mannosyltransferase gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3107 YPO3108 YPO3108 wbyI wbyI 3464635 3465556 - gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3108 YPO3110 YPO3110 wzx wzx 3465567 3466910 - O-unit flippase gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3110 YPO3111 YPO3111 wbyH wbyH 3466984 3468267 - hypothetical protein gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3111 YPO3112 YPO3112 prt prt 3468268 3469125 - paratose synthase gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3112 YPO3113 YPO3113 ddhC ddhC 3469162 3470475 - CDP-4-keto-6-deoxy-D-glucose-3-dehydratase gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3113 YPO3114 YPO3114 ascB ascB 3470493 3471568 - gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3114 YPO3115 YPO3115 ddhA ddhA 3471573 3472358 - glucose-1-phosphate cytidylyltransferase gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3115 YPO3116 YPO3116 ddhD ddhD 3472384 3473373 - CDP-6-deoxy-delta-3%2C4-glucoseen reductase catalyzes the formation of 3%2C6-dideoxy-D-glycero-D-glycero-4-hexulose gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3116 YPO3117 YPO3117 hemH hemH 3473971 3474933 - ferrochelatase protoheme ferro-lyase%3B catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme%3B involved in protoheme biosynthesis%3B in some organisms this protein is membrane-associated while in others it is cytosolic gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3117 YPO3118 YPO3118 adk adk 3475023 3475667 - adenylate kinase essential enzyme that recycles AMP in active cells%3B converts ATP and AMP to two molecules of ADP gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3118 YPO3119 YPO3119 htpG htpG 3475894 3477768 - heat shock protein 90 molecular chaperone gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3119 YPO3120 YPO3120 recR recR 3477960 3478565 - recombination protein RecR involved in a recombinational process of DNA repair%2C independent of the recBC complex gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3120 YPO3121 YPO3121 YPO3121 3478565 3478897 - hypothetical protein gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3121 YPO3122 YPO3122 dnaX dnaX 3478953 3480929 - DNA polymerase III subunits gamma and tau catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the tau chain serves as a scaffold to help in the dimerizaton of the alpha%2Cepsilon and theta core complex%3B the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3122 YPO3123 YPO3123 apt apt 3481585 3482148 - adenine phosphoribosyltransferase catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3123 YPO3125 YPO3125 YPO3125 3482565 3484364 - gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3125 YPO3126 YPO3126 ybaN ybaN 3484455 3484724 - gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3126 YPO3127 YPO3127 priC priC 3484925 3485461 + primosomal replication protein n'' gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3127 YPO3128 YPO3128 YPO3128 3485632 3485787 + hypothetical protein gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3128 YPO3129 YPO3129 aefA aefA 3486127 3489546 - potassium efflux protein KefA small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer%3B maintains cell turgor through accumulation and release of potassium%3B large protein class of MscS gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3129 YPO3130 YPO3130 YPO3130 3489786 3490139 - hypothetical protein gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3130 YPO3131 YPO3131 acrR acrR 3490152 3490808 - DNA-binding transcriptional repressor AcrR regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3131 YPO3132 YPO3132 acrA acrA 3490953 3492140 + multidrug efflux protein gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3132 YPO3133 YPO3133 acrB acrB 3492157 3495309 + multidrug efflux protein gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3133 YPO3134 YPO3134 rpmE2 rpmE2 3495495 3495755 + 50S ribosomal protein L31 RpmE2%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster do not have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3134 YPO3135 YPO3135 rpmJ rpmJ 3495771 3495914 + 50S ribosomal protein L36 smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group do not have the motif gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3135 YPO3136 YPO3136 YPO3136 3496788 3497141 + hypothetical protein no significant database hits gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3136 YPO3137 YPO3137 YPO3137 3497300 3497668 + hypothetical protein gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3137 YPO3138 YPO3138 ymoA ymoA 3497717 3497920 + hemolysin expression-modulating protein with Hns involved in transcriptional regulation of hemolysin%3B non-specific DNA-binding protein which affects the production of multiple proteins gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3138 YPO3139 YPO3139 YPO3139 3498652 3499197 + 6-O-methylguanine-DNA methyltransferase gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3139 YPO3140 YPO3140 ybaY ybaY 3499333 3499854 - lipoprotein gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3140 YPO3141 YPO3141 tesB tesB 3500111 3500971 + acyl-CoA thioesterase gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3141 YPO3142 YPO3142 amtB amtB 3501231 3502526 - ammonium transporter gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3142 YPO3143 YPO3143 glnK glnK 3502560 3502898 - nitrogen regulatory protein P-II 2 indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA%3B functionally it is equivalent to protein P-II (GlnB)%2C but itsexpression is driven by the presence of uridylyltransferase%2C nitrogen regulator I%2C and the absence of ammonia. gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3143 YPO3144 YPO3144 mdlB mdlB 3503308 3505131 - multidrug transporter membrane\ATP-binding components gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3144 YPO3145 YPO3145 mdlA mdlA 3505124 3506890 - multidrug transporter membrane\ATP-binding components gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3145 YPO3146 YPO3146 YPO3146 3506992 3507453 - AsnC family transcriptional regulator gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3146 YPO3147 YPO3147 YPO3147 3507579 3508619 + pyridoxal-phosphate dependent protein gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3147 YPO3148 YPO3148 YPO3148 3508831 3509652 - haloacid dehalogenase gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3148 YPO3149 YPO3149 YPO3149 3509757 3511460 + hypothetical protein gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3149 YPO3150 YPO3150 YPO3150 3511725 3512423 + queuosine biosynthesis protein QueC YbaX%3B catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)%2C as one of the early reactions of quenosine biosynthesis%3B quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn%2C Asp%2C Tyr%2C and His gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3150 YPO3151 YPO3151 YPO3151 3512509 3512916 - hypothetical protein gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3151 YPO3152 YPO3152 ybaV ybaV 3513270 3513716 - hypothetical protein gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3152 YPO3153 YPO3153 ppiD ppiD 3513856 3515742 - peptidyl-prolyl cis-trans isomerase D gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3153 YPO3154 YPO3154 hupB hupB 3516043 3516315 - transcriptional regulator HU subunit beta histone-like DNA-binding protein gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3154 YPO3155 YPO3155 lon lon 3516533 3518887 - DNA-binding ATP-dependent protease La gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3155 YPO3156 YPO3156 clpX clpX 3519082 3520353 - ATP-dependent protease ATP-binding subunit ClpX binds and unfolds substrates as part of the ClpXP protease gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3156 YPO3157 YPO3157 clpP clpP 3520559 3521182 - ATP-dependent Clp protease proteolytic subunit hydrolyzes proteins to small peptides%3B with the ATPase subunits ClpA or ClpX%2C ClpP degrades specific substrates gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3157 YPO3158 YPO3158 tig tig 3521644 3522948 - trigger factor Tig%3B RopA%3B peptidyl-prolyl cis/trans isomerase%3B promotes folding of newly synthesized proteins%3B binds ribosomal 50S subunit%3B forms a homodimer gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3158 YPO3160 YPO3160 bolA bolA 3523365 3523685 - transcriptional regulator BolA positive transcriptional regulator of morphogenetic pathway%3B controlling several genes involved in oxidative stress%2C acid stress%2C heat shock%2C osmotic shock%2C and carbon-starvation stress gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3160 YPO3161 YPO3161 yajG yajG 3524034 3524612 + hypothetical protein gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3161 YPO3162 YPO3162 ampG ampG 3524730 3526208 + muropeptide transporter in Escherichia coli this protein is a permease involved in peptidoglycan recycling%3B member of major facilitator superfamily%3B MFS%3B inner membrane protein gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3162 YPO3163 YPO3163 yfeN yfeN 3526500 3527267 + hypothetical protein gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3163 YPO3164 YPO3164 cyoA cyoA 3527637 3528593 + cytochrome o ubiquinol oxidase subunit II gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3164 YPO3165 YPO3165 cyoB cyoB 3528598 3530589 + cytochrome O ubiquinol oxidase subunit I gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3165 YPO3166 YPO3166 cyoC cyoC 3530579 3531193 + cytochrome o ubiquinol oxidase subunit III gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3166 YPO3167 YPO3167 cyoD cyoD 3531193 3531525 + cytochrome o ubiquinol oxidase subunit IV gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3167 YPO3168 YPO3168 cyoE cyoE 3531536 3532426 + protoheme IX farnesyltransferase converts protoheme IX and farnesyl diphosphate to heme O gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3168 YPO3169 YPO3169 yajR yajR 3532904 3534274 + transporter gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3169 YPO3170 YPO3170 YPO3170 3534398 3534889 - nucleotide-binding protein nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ%3B the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3170 YPO3171 YPO3171 apbA apbA 3535121 3536032 + 2-dehydropantoate 2-reductase ketopantoate reductase%3B catalyzes the NADPH reduction of ketopantoate to pantoate%3B functions in pantothenate (vitamin B5) biosynthesis gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3171 YPO3172 YPO3172 thiJ thiJ 3535995 3536585 + DJ-1 family protein gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3172 YPO3173 YPO3173 thiI thiI 3536653 3538104 - thiamine biosynthesis protein ThiI Required for the synthesis of the thiazole moiety gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3173 YPO3175 YPO3175 xseB xseB 3538454 3538708 + exodeoxyribonuclease VII small subunit catalyzes the bidirectional exonucleolytic cleavage of DNA gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3175 YPO3176 YPO3176 ispA ispA 3538713 3539633 + geranyltranstransferase gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3176 YPO3177 YPO3177 dxs dxs 3539789 3541648 + 1-deoxy-D-xylulose-5-phosphate synthase catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3177 YPO3178 YPO3178 tnp tnp 3541827 3542285 - transposase for the IS1541 insertion element gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3178 YPO3179 YPO3179 pgpA pgpA 3542499 3542984 - phosphatidylglycerophosphatase A hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3179 YPO3180 YPO3180 thiL thiL 3542977 3543966 - thiamine monophosphate kinase catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3180 YPO3181 YPO3181 nusB nusB 3544207 3544623 - transcription antitermination protein NusB Regulates rRNA biosynthesis by transcriptional antitermination gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3181 YPO3182 YPO3182 ribH ribH 3544644 3545114 - 6%2C7-dimethyl-8-ribityllumazine synthase RibE%3B 6%2C7-diimethyl-8-ribityllumazine synthase%3B DMRL synthase%3B lumazine synthase%3B beta subunit of riboflavin synthase%3B condenses 5-amino-6-(1'-D)-ribityl-amino-2%2C4(1H%2C3H)-pyrimidinedione with L-3%2C4-dihydrohy-2-butanone-4-phosphate to generate 6%2C6-dimethyl-8-lumazine (DMRL)%3B riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12)%3B involved in the last steps of riboflavin biosynthesis%3B forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli%3B in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3182 YPO3183 YPO3183 ribD ribD 3545250 3546359 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway%3B catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3183 YPO3184 YPO3184 nrdR nrdR 3546509 3546958 - transcriptional regulator NrdR gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3184 YPO3185 YPO3185 YPO3185 3547029 3548350 - gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3185 YPO3187 YPO3187 tnp tnp 3548648 3549106 - transposase for the IS1541 insertion element gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3187 YPO3188 YPO3188 secF secF 3549313 3550281 - preprotein translocase subunit SecF forms a complex with SecD and YajC%3B SecDFyajC stimulates the proton motive force-driven protein translocation%3B seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane%3B in some organisms%2C such as Bacillus subtilis%2C SecD is fused to SecF gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3188 YPO3189 YPO3189 secD secD 3550292 3552139 - preprotein translocase subunit SecD part of the preprotein secretory system%3B when complexed with proteins SecF and YajC%2C SecDFyajC stimulates the proton motive force-driven protein translocation%2C and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane gene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3189 YPO3190 YPO3190 yajC yajC 3552167 3552532 - preprotein translocase subunit YajC member of preprotein translocase%3B forms a heterotrimer with SecD and SecF%3B links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3190 YPO3191 YPO3191 tgt tgt 3552614 3553738 - queuine tRNA-ribosyltransferase Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp%2C -Asn%2C -His and -Tyr) gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3191 YPO3192 YPO3192 queA queA 3553831 3554901 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3192 YPO3193 YPO3193 YPO3193 3555104 3555685 + hypothetical protein gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3193 YPO3194 YPO3194 ahpC ahpC 3555984 3556586 + alkyl hydroperoxide reductase gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3194 YPO3195 YPO3195 tnp tnp 3556801 3557259 + transposase for the IS1541 insertion element gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3195 YPO3196 YPO3196 YPO3196 3557387 3557518 - hypothetical protein no significant database hits gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3196 YPO3197 YPO3197 YPO3197 3557544 3557819 - hypothetical protein no significant database hits gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3197 YPO3198 YPO3198 ggt ggt 3557687 3559452 + gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3198 YPO3199 YPO3199 YPO3199 3559660 3560340 - short chain dehydrogenase gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3199 YPO3200 YPO3200 malZ malZ 3560495 3562324 - maltodextrin glucosidase gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3200 YPO3201 YPO3201 proY proY 3562885 3564276 - permease cryptic permease that may be involved in the transport of proline across the inner membrane%3B in Salmonella typhimurium%2C the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3201 YPO3202 YPO3202 brnQ brnQ 3564352 3565671 - branched-chain amino acid transport system II carrier protein gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3202 YPO3203 YPO3203 pstS pstS 3566145 3567209 - phosphate binding protein gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3203 YPO3204 YPO3204 phoR phoR 3567231 3568547 - phosphate regulon sensor protein membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3204 YPO3205 YPO3205 phoB phoB 3568572 3569261 - phosphate regulon transcriptional regulator gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3205 YPO3206 YPO3206 sbcD sbcD 3569529 3570773 + exonuclease SbcD with SbcC cleaves DNA hairpin structure%2C also has 5' single-strand endonuclease activity gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3206 YPO3207 YPO3207 YPO3207 3570770 3574477 + hypothetical protein gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3207 YPO3208 YPO3208 YPO3208 3574487 3575269 - transposase/IS protein ypmt1.57c gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3208 YPO3209 YPO3209 y1093 y1093 3575266 3576288 - transposase for insertion sequence IS100 gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3209 YPO3211 YPO3211 YPO3211 3577020 3577934 - fructokinase catalyzes phosphorylation of fructose%3B cytosolic enzyme gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3211 YPO3212 YPO3212 rdgC rdgC 3578267 3579178 + recombination associated protein Required for efficient pilin antigenic variation gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3212 YPO3213 YPO3213 YPO3213 3579414 3579701 - hypothetical protein gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3213 YPO3215 YPO3215 aroL aroL 3580191 3580715 - shikimate kinase II type II enzyme similar to type I but differentially regulated and with a lower Km%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3215 YPO3216 YPO3216 YPO3216 3580962 3581519 - methyltransferase gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3216 YPO3218 YPO3218 YPO3218 3582249 3582770 - hypothetical protein gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3218 YPO3219 YPO3219 YPO3219 3583016 3583285 - hypothetical protein no significant database matches gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3219 YPO3220 YPO3220 YPO3220 3583468 3584226 - hypothetical protein gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3220 YPO3221 YPO3221 proA proA 3584554 3585813 - gamma-glutamyl phosphate reductase Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3221 YPO3222 YPO3222 proB proB 3585823 3586926 - gamma-glutamyl kinase catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3222 YPO3223 YPO3223 crl crl 3587103 3587504 - DNA-binding transcriptional regulator Crl involved in the expression of csgBA which is involved in curli formation%3B interacts with sigmaS gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3223 YPO3224 YPO3224 frsA frsA 3587564 3588811 - fermentation/respiration switch protein forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc%3B FrsA may promote fermentation gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3224 YPO3225 YPO3225 gpt gpt 3588938 3589396 - xanthine-guanine phosphoribosyltransferase catalyzes the conversion of guanine%2C xanthine and%2C to a lesser extent%2C hypoxanthine to GMP%2C XMP and IMP%2C respectively gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3225 YPO3226 YPO3226 YPO3226 3589823 3590128 + hypothetical protein gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3226 YPO3227 YPO3227 YPO3227 3590325 3591929 + carbohydrate-binding protein gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3227 YPO3228 YPO3228 YPO3228 3592389 3593300 - LysR family transcriptional regulator gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3228 YPO3230 YPO3230 pepD pepD 3595175 3596635 + aminoacyl-histidine dipeptidase gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3230 YPO3231 YPO3231 dinP dinP 3596749 3597807 - DNA polymerase IV involved in translesion DNA polymerization with beta clamp of polymerase III%3B belongs to Y family of polymerases%3B does not contain proofreading function gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3231 YPO3232 YPO3232 YPO3232 3598163 3599110 + hypothetical protein gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3232 YPO3233 YPO3233 YPO3233 3599354 3599581 - hypothetical protein gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3233 YPO3234 YPO3234 apbE apbE 3599594 3600616 - thiamine biosynthesis lipoprotein gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3234 YPO3235 YPO3235 nqrF nqrF 3600657 3601880 - Na(+)-translocating NADH-quinone reductase subunit F uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3235 YPO3236 YPO3236 nqrE nqrE 3601896 3602492 - Na(+)-translocating NADH-quinone reductase subunit E Part of the NQR complex which consists of NqrA%2C NqrB%2C NqrC%2C NqrD%2C NqrE and NqrF%3B NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm%3B NqrE is probably involved in the second step%2C the conversion of ubisemiquinone to ubiquinol. gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3236 YPO3237 YPO3237 nqrD nqrD 3602499 3603128 - Na(+)-translocating NADH-quinone reductase subunit D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3237 YPO3238 YPO3238 nqrC nqrC 3603121 3603921 - Na(+)-translocating NADH-quinone reductase subunit C uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3238 YPO3239 YPO3239 nqrB nqrB 3603911 3605152 - Na(+)-translocating NADH-quinone reductase subunit B uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3239 YPO3240 YPO3240 nqrA nqrA 3605156 3606499 - Na(+)-translocating NADH-quinone reductase subunit A uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3240 YPO3241 YPO3241 yafK yafK 3606995 3607735 + hypothetical protein gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3241 YPO3242 YPO3242 YPO3242 3607700 3608473 - hypothetical protein gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3242 YPO3243 YPO3243 gmhA gmhA 3608676 3609257 - phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3243 YPO3244 YPO3244 fadE fadE 3609497 3611944 + acyl-CoA dehydrogenase functions in fatty acid oxidation%3B converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3244 YPO3245 YPO3245 YPO3245 3612116 3612862 - hypothetical protein gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3245 YPO3246 YPO3246 hmwC hmwC 3612864 3614717 - accessory processing protein gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3246 YPO3247 YPO3247 hmwA hmwA 3614872 3620604 - adhesin gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3247 YPO3248 YPO3248 hxuB hxuB 3620645 3622435 - surface-exposed protein gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3248 YPO3249 YPO3249 YPO3249 3623524 3624816 - allantoate amidohydrolase allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar%3B the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia%3B carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids%2C ammonia%2C and carbon dioxide gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3249 YPO3251 YPO3251 y1093 y1093 3625344 3626366 + transposase for insertion sequence IS100 gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3251 YPO3252 YPO3252 YPO3252 3626363 3627145 + transposase/IS protein ypmt1.57c gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3252 YPO3254 YPO3254 YPO3254 3628151 3628897 - amino acid ABC transporter ATP-binding protein gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3254 YPO3255 YPO3255 YPO3255 3628878 3629531 - amino acid ABC transporter permease gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3255 YPO3256 YPO3256 YPO3256 3629528 3630196 - amino acid ABC transporter permease gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3256 YPO3257 YPO3257 YPO3257 3630209 3630997 - amino acid ABC transporter substrate-binding protein gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3257 YPO3259 YPO3259 YPO3259 3631325 3632170 - rpiR family transcriptional regulator gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3259 YPO3260 YPO3260 YPO3260 3632468 3632671 + hypothetical protein no significant database hits gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3260 YPO3261 YPO3261 YPO3261 3632668 3634065 + amidase catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3261 YPO3262 YPO3262 YPO3262 3634094 3634561 + hypothetical protein no significant database hits gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3262 YPO3263 YPO3263 YPO3263 3634789 3635988 + sugar transporter gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3263 YPO3264 YPO3264 YPO3264 3636148 3636921 + amino acid transporter gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3264 YPO3265 YPO3265 YPO3265 3636918 3637259 + hypothetical protein gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3265 YPO3266 YPO3266 emrR emrR 3637431 3637943 + transcriptional repressor MprA DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux%3B negative regulator of the multidrug operon emrAB gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3266 YPO3267 YPO3267 emrA emrA 3638327 3639499 + multidrug resistance protein A gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3267 YPO3268 YPO3268 emrB emrB 3639538 3641073 + multidrug resistance protein B gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3268 YPO3269 YPO3269 yfiF yfiF 3641196 3642362 - methyltransferase gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3269 YPO3270 YPO3270 trxC trxC 3642614 3643051 + thioredoxin gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3270 YPO3271 YPO3271 YPO3271 3643221 3643970 + hypothetical protein gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3271 YPO3272 YPO3272 yfiQ yfiQ 3644013 3646655 + acetyltransferase gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3272 YPO3273 YPO3273 pssA pssA 3646828 3648186 + phosphatidylserine synthase catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine%3B bounds to the ribosome gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3273 YPO3274 YPO3274 YPO3274 3648248 3648589 + hypothetical protein gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3274 YPO3274a YPO3274a YPO3274a 3654181 3654366 + hypothetical protein gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3274a YPO3275 YPO3275 clpB clpB 3654692 3657265 - protein disaggregation chaperone gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3275 YPO3276 YPO3276 YPO3276 3657395 3658126 - hypothetical protein gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3276 YPO3277 YPO3277 rluD rluD 3658128 3659105 - 23S rRNA pseudouridine synthase D responsible for synthesis of pseudouridine from uracil at positions 1911%2C 1915 and 1917 in 23S ribosomal RNA gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3277 YPO3278 YPO3278 yfiO yfiO 3659241 3659972 + outer membrane protein assembly complex subunit YfiO with YaeT%2C NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane%3B involved in resistance to ampicillin and tetracycline gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3278 YPO3279 YPO3279 yfiA yfiA 3660327 3660689 + sigma 54 modulation protein gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3279 YPO3280 YPO3280 tnp tnp 3661020 3661478 - transposase for the IS1541 insertion element gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3280 YPO3282 YPO3282 y1093 y1093 3662781 3663803 + transposase for insertion sequence IS100 gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3282 YPO3283 YPO3283 YPO3283 3663800 3664582 + transposase/IS protein ypmt1.57c gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3283 YPO3285 YPO3285 tyrA tyrA 3664982 3666103 - bifunctional chorismate mutase/prephenate dehydrogenase catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3285 YPO3286 YPO3286 aroF aroF 3666116 3667186 - phospho-2-dehydro-3-deoxyheptonate aldolase catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C tyrosine sensitive gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3286 YPO3287 YPO3287 YPO3287 3667419 3668135 + two-component response-regulatory protein YehT unknown function%3B when overproduced it confers drug-resistance gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3287 YPO3288 YPO3288 dcuB dcuB 3668564 3669908 + gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3288 YPO3290 YPO3290 ydiY ydiY 3670231 3670998 + hypothetical protein gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3290 YPO3291 YPO3291 tnp tnp 3671301 3671759 - transposase for the IS1541 insertion element gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3291 YPO3292 YPO3292 rplS rplS 3671971 3672318 - 50S ribosomal protein L19 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3292 YPO3293 YPO3293 trmD trmD 3672399 3673139 - tRNA (guanine-N(1)-)-methyltransferase methylates guanosine-37 in various tRNAs%3B uses S-adenosyl-L-methionine to transfer methyl group to tRNA gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3293 YPO3294 YPO3294 rimM rimM 3673178 3673726 - 16S rRNA-processing protein RimM Essential for efficient processing of 16S rRNA gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3294 YPO3295 YPO3295 rpsP rpsP 3673748 3673996 - 30S ribosomal protein S16 binds to lower part of 30S body where it stabilizes two domains%3B required for efficient assembly of 30S%3B in Escherichia coli this protein has nuclease activity gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3295 YPO3296 YPO3296 ffh ffh 3674224 3675585 - signal recognition particle protein with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3296 YPO3297 YPO3297 corE corE 3675649 3676542 + hypothetical protein gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3297 YPO3298 YPO3298 yfjD yfjD 3676704 3677894 + hypothetical protein gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3298 YPO3299 YPO3299 tnp tnp 3678032 3678490 - transposase for the IS1541 insertion element gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3299 YPO3300 YPO3300 luxS luxS 3678694 3679209 - S-ribosylhomocysteinase catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3300 YPO3301 YPO3301 gshA gshA 3679377 3680936 - glutamate--cysteine ligase involved in the first step of glutathione biosynthesis gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3301 YPO3302 YPO3302 yqaA yqaA 3681019 3681447 - hypothetical protein gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3302 YPO3303 YPO3303 yqaB yqaB 3681444 3682010 - fructose-1-phosphatase YqaB%3B catalyzes the dephosphorylation of fructose 1-phosphate%2C 6-phosphogluconate and p-nitrophenyl phosphate (pNPP)%3B presents beta-phosphoglucomutase activity at a lower extent gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3303 YPO3304 YPO3304 csrA csrA 3683279 3683464 - carbon storage regulator affects carbohydrate metabolism%3B has regulatory role in many processes gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3304 YPO3305 YPO3305 alaS alaS 3683714 3686341 - alanyl-tRNA synthetase Catalyzes a two-step reaction%2C first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3305 YPO3306 YPO3306 recX recX 3686481 3687044 - recombination regulator RecX binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3306 YPO3307 YPO3307 recA recA 3687182 3688252 - recombinase A catalyzes the hydrolysis of ATP in the presence of single-stranded DNA%2C the ATP-dependent uptake of single-stranded DNA by duplex DNA%2C and the ATP-dependent hybridization of homologous single-stranded DNAs gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3307 YPO3308 YPO3308 YPO3308 3688367 3688855 - competence damage-inducible protein A gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3308 YPO3309 YPO3309 YPO3309 3689172 3690512 + hypothetical protein gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3309 YPO3310 YPO3310 YPO3310 3690760 3691704 + transcriptional regulator gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3310 YPO3311 YPO3311 YPO3311 3691926 3693350 - hypothetical protein gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3311 YPO3312 YPO3312 YPO3312 3693371 3694858 - glycerol kinase gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3312 YPO3313 YPO3313 YPO3313 3694861 3695805 - hypothetical protein gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3313 YPO3314 YPO3314 YPO3314 3695798 3696628 - hypothetical protein gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3314 YPO3315 YPO3315 rbsC rbsC 3696884 3698029 - sugar ABC transporter permease gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3315 YPO3316 YPO3316 YPO3316 3698026 3699549 - sugar ABC transporter ATP-binding protein gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3316 YPO3317 YPO3317 YPO3317 3699549 3700166 - lipoprotein gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3317 YPO3318 YPO3318 YPO3318 3700259 3701233 - sugar ABC transporter substrate-binding protein gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3318 YPO3319 YPO3319 katY katY 3701736 3703949 + catalase-peroxidase gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3319 YPO3320 YPO3320 cybC cybC 3704026 3704409 + cytochrome B562 gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3320 YPO3321 YPO3321 cybB cybB 3704557 3705087 + cytochrome b561 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3321 YPO3322 YPO3322 YPO3322 3705344 3706054 - twin-argninine leader-binding protein DmsD binds to the twin-arginine signal peptides of certain proteins%2C including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3322 YPO3323 YPO3323 dmsC dmsC 3706200 3707060 - anaerobic dimethyl sulfoxide reductase subunit C gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3323 YPO3324 YPO3324 dmsB dmsB 3707062 3707679 - anaerobic dimethyl sulfoxide reductase subunit B gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3324 YPO3325 YPO3325 dmsA dmsA 3707691 3710141 - anaerobic dimethyl sulfoxide reductase subunit A gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3325 YPO3326 YPO3326 araD araD 3710604 3711299 - L-ribulose-5-phosphate 4-epimerase catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3326 YPO3327 YPO3327 fucR fucR 3712002 3712811 + deoR family regulatory protein gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3327 YPO3328 YPO3328 YPO3328 3712873 3713976 + sugar ABC transporter substrate-binding protein gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3328 YPO3329 YPO3329 tnp tnp 3714227 3714685 + transposase for the IS1541 insertion element gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3329 YPO3330 YPO3330 YPO3330 3714836 3716350 + sugar ABC transporter ATP-binding protein gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3330 YPO3331 YPO3331 YPO3331 3716343 3717332 + sugar ABC transporter permease gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3331 YPO3332 YPO3332 YPO3332 3717345 3718382 + sugar ABC transporter permease gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3332 YPO3333 YPO3333 sgbU sgbU 3718588 3719469 + L-xylulose 5-phosphate 3-epimerase L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated%3B may be involved in the utilization of 2%2C3-diketo-L-gulonate gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3333 YPO3334 YPO3334 lyx lyx 3719480 3720976 + L-xylulose kinase gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3334 YPO3335 YPO3335 fumA fumA 3721374 3723017 + fumarate hydratase%2C class I gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3335 YPO3336 YPO3336 YPO3336 3723146 3723451 + hypothetical protein gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3336 YPO3337 YPO3337 map map 3723448 3724233 + methionine aminopeptidase gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3337 YPO3339 YPO3339 YPO3339 3724591 3725778 - hypothetical protein gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3339 YPO3340 YPO3340 YPO3340 3726211 3728307 - gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3340 YPO3341a YPO3341a YPO3341a 3728426 3728731 + hypothetical protein gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3341a YPO3342 YPO3342 yhjA yhjA 3728968 3730347 + cytochrome C peroxidase gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3342 YPO3343 YPO3343 YPO3343 3730412 3731182 + ABC transporter substrate-binding protein gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3343 YPO3344 YPO3344 YPO3344 3731603 3731809 + hypothetical protein gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3344 YPO3345 YPO3345 YPO3345 3732005 3732283 + hypothetical protein no significant database hits gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3345 YPO3346 YPO3346 arsR arsR 3732530 3732871 + DNA-binding transcriptional repressor ArsR regulates the expression of of the arsRBC involved in resistance to arsenic gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3346 YPO3347 YPO3347 arsB arsB 3732956 3734245 + arsenical pump membrane protein gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3347 YPO3348 YPO3348 YPO3348 3734812 3735771 + transcriptional regulator gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3348 YPO3349 YPO3349 YPO3349 3735892 3736566 - hypothetical protein gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3349 YPO3350 YPO3350 dhaK dhaK 3736573 3737574 - dihydroxyacetone kinase gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3350 YPO3351 YPO3351 YPO3351 3737661 3738431 - short chain dehydrogenase gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3351 YPO3352 YPO3352 ydjJ ydjJ 3738495 3739610 - zinc-binding dehydrogenase gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3352 YPO3353 YPO3353 rpiB rpiB 3740093 3740548 + ribose-5-phosphate isomerase B catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate%3B enzyme from E. coli shows allose 6-phosphate isomerase activity gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3353 YPO3354 YPO3354 mutS mutS 3741342 3743897 + DNA mismatch repair protein MutS This protein performs the mismatch recognition step during the DNA repair process gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3354 YPO3355 YPO3355 rpoS rpoS 3744225 3745223 - RNA polymerase sigma factor RpoS sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor controls a regulon of genes required for protection against external stresses gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3355 YPO3356 YPO3356 nlpD nlpD 3745278 3746279 - lipoprotein NlpD outer membrane lipoprotein involved in stationary-phase cell survival%3B similar to LppB virulence determinant from Haemophilus somnus gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3356 YPO3357 YPO3357 pcm pcm 3746383 3747009 - protein-L-isoaspartate O-methyltransferase catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3357 YPO3358 YPO3358 surE surE 3747003 3747767 - stationary phase survival protein SurE catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3358 YPO3359 YPO3359 truD truD 3747745 3748794 - tRNA pseudouridine synthase D catalyzes the modification of U13 in tRNA(Glu) gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3359 YPO3360 YPO3360 ispF ispF 3748805 3749293 - 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3360 YPO3361 YPO3361 ispD ispD 3749432 3750157 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4-diphosphocytidyl-2C-methyl-D-erythritol synthase%3B MEP cytidylyltransferase%3B MCT%3B catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate%3B involved in isoprenoid and isopentenyl-PP biosynthesis%3B forms homodimers gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3361 YPO3362 YPO3362 ftsB ftsB 3750161 3750481 - cell division protein FtsB forms a complex with FtsL and FtsQ%3B colocalizes to the septal region of the dividing cell%3B membrane protein gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3362 YPO3363 YPO3363 ygbE ygbE 3750795 3751112 - hypothetical protein gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3363 YPO3364 YPO3364 cysC cysC 3751303 3751944 - adenylylsulfate kinase converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3364 YPO3365 YPO3365 cysN cysN 3751946 3753382 - sulfate adenylyltransferase subunit 1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step%3B forms a heterodimer with CysD%3B part of the GTP-binding elongation factor family CysN/NodQ gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3365 YPO3366 YPO3366 cysD cysD 3753475 3754383 - sulfate adenylyltransferase subunit 2 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3366 YPO3367 YPO3367 cysG cysG 3754394 3755812 - siroheme synthase gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3367 YPO3368 YPO3368 YPO3368 3756113 3756379 - hypothetical protein no significant database matches gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3368 YPO3368a YPO3368a YPO3368a 3756403 3756603 + hypothetical protein gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3368a YPO3369 YPO3369 YPO3369 3756778 3757185 + hypothetical protein gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3369 YPO3370 YPO3370 cysH cysH 3757431 3758154 - gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3370 YPO3371 YPO3371 cysI cysI 3758151 3759881 - sulfite reductase subunit beta hemoprotein%3B NADPH dependent%3B with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3371 YPO3372 YPO3372 cysJ cysJ 3759881 3761701 - sulfite reductase subunit alpha catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate%3B a flavoprotein with flavin reductase activity gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3372 YPO3373 YPO3373 ygcM ygcM 3762094 3762453 + 6-pyruvoyl tetrahydrobiopterin synthase gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3373 YPO3374 YPO3374 YPO3374 3762687 3763358 - hypothetical protein gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3374 YPO3375 YPO3375 sodC sodC 3763462 3764067 - superoxide dismutase gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3375 YPO3376 YPO3376 eno eno 3764439 3765734 - phosphopyruvate hydratase enolase%3B catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3376 YPO3377 YPO3377 pyrG pyrG 3765815 3767452 - CTP synthetase CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3377 YPO3378 YPO3378 mazG mazG 3767664 3768506 - nucleoside triphosphate pyrophosphohydrolase functions in degradation of stringent response intracellular messenger ppGpp%3B in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF%3B activity of MazG is inhibited by MazEF in vitro%3B ppGpp inhibits mazEF expression%3B MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation%3B MazG also interacts with the GTPase protein Era gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3378 YPO3380 YPO3380 relA relA 3768708 3770942 - GDP/GTP pyrophosphokinase (p)ppGpp synthetase%3B catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3380 YPO3381 YPO3381 barA barA 3771386 3774178 + hybrid sensory histidine kinase BarA part of the two-component regulatory system with UvrY%3B involved in the regulation of carbon metabolism via the csrA/csrB regulatory system gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3381 YPO3382 YPO3382 gsrA gsrA 3774353 3775798 - serine endoprotease protease Do%3B required at high temperature%3B degrades damaged proteins gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3382 YPO3383 YPO3383 dgt dgt 3775996 3777516 - deoxyguanosinetriphosphate triphosphohydrolase forms a homotetramer%3B requires magnesium for activity%3B catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3383 YPO3384 YPO3384 mtn mtn 3777810 3778511 + 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3384 YPO3385 YPO3385 btuF btuF 3778511 3779353 + vitamin B12-transporter protein BtuF solute binding component of the vitamin B12 transport system BtuCDF gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3385 YPO3386 YPO3386 yadS yadS 3779353 3779967 + hypothetical protein gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3386 YPO3387 YPO3387 YPO3387 3780252 3780596 - iron-sulfur cluster insertion protein ErpA essential respiratory protein A%3B may be involved in the transfer of iron-sulfur clusters%3B essential for growth using oxygen or alternate electron acceptors gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3387 YPO3388 YPO3388 yadQ yadQ 3780732 3782168 - chloride channel protein Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3388 YPO3389 YPO3389 hemL hemL 3782549 3783829 + glutamate-1-semialdehyde aminotransferase Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3389 YPO3390 YPO3390 fhuB fhuB 3784203 3786200 - iron-hydroxamate transporter permease part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3390 YPO3391 YPO3391 fhuD fhuD 3786197 3787285 - iron-hydroxamate transporter substrate-binding subunit Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter%3B binds to all hydroxamate siderophores gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3391 YPO3392 YPO3392 fhuC fhuC 3787285 3788079 - iron-hydroxamate transporter ATP-binding protein part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3392 YPO3393 YPO3393 mrcB mrcB 3788401 3790875 - penicillin-binding protein 1b bifunctional periplasmic enzyme%3B contains transglycosylase and transpeptidase activity%3B major enzyme for peptidoglycan biosynthesis in Escherichia coli%3B transmembrane protein%3B forms dimers%3B three variants%2C one of which may be a degradation product%2C while the other appears to result from an alternative initiation site%2C are found within the cell gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3393 YPO3394 YPO3394 hrpB hrpB 3790984 3793542 - ATP-dependent RNA helicase HrpB similar in sequence to the ATP-dependent RNA helicase HrpA gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3394 YPO3395 YPO3395 ligT ligT 3793586 3794161 + 2'-5' RNA ligase gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3395 YPO3396 YPO3396 sfsA sfsA 3794274 3795011 + sugar fermentation stimulation protein A Regulatory factor involved in maltose metabolism gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3396 YPO3397 YPO3397 dksA dksA 3795181 3795636 + RNA polymerase-binding transcription factor gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3397 YPO3398 YPO3398 yadB yadB 3795916 3796881 + glutamyl-Q tRNA(Asp) synthetase this tRNA synthetase lacks the tRNA anticodon interaction domain%3B instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4%2C5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp%3B the modified tRNA does not bind elongation factor Tu gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3398 YPO3399 YPO3399 pcnB pcnB 3796970 3798445 + poly(A) polymerase Polymerase that creates the 3' poly(A) tail found in some mRNA's gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3399 YPO3400 YPO3400 folK folK 3798453 3798932 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3400 YPO3401 YPO3401 panB panB 3799198 3799998 + 3-methyl-2-oxobutanoate hydroxymethyltransferase catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5%2C10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3401 YPO3402 YPO3402 panC panC 3800086 3800940 + pantoate--beta-alanine ligase catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3402 YPO3403 YPO3403 panD panD 3801351 3801731 + aspartate alpha-decarboxylase Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3403 YPO3404 YPO3404 YPO3404 3801880 3803073 - hypothetical protein gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3404 YPO3405 YPO3405 yadH yadH 3803400 3804170 - ABC transporter integral membrane protein gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3405 YPO3406 YPO3406 yadG yadG 3804167 3805093 - ABC transporter ATP-binding protein gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3406 YPO3407 YPO3407 yadF yadF 3805329 3805991 + carbonic anhydrase gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3407 YPO3408 YPO3408 hpt hpt 3806145 3806681 - hypoxanthine phosphoribosyltransferase gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3408 YPO3409 YPO3409 yacK yacK 3806901 3808502 - multicopper oxidase laccase%3B copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3409 YPO3410 YPO3410 yacC yacC 3808819 3809166 + hypothetical protein gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3410 YPO3411 YPO3411 speE speE 3809283 3810173 + spermidine synthase catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3411 YPO3412 YPO3412 speD speD 3810251 3811045 + S-adenosylmethionine decarboxylase S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3412 YPO3413 YPO3413 yddG yddG 3811483 3812391 + hypothetical protein gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3413 YPO3414 YPO3414 YPO3414 3812502 3812861 - hypothetical protein gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3414 YPO3415 YPO3415 acnB acnB 3813160 3815757 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3415 YPO3416 YPO3416 tnp tnp 3816327 3816785 - transposase for the IS1541 insertion element gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3416 YPO3417 YPO3417 lpdA lpdA 3817028 3818455 - dihydrolipoamide dehydrogenase E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex%3B catalyzes the oxidation of dihydrolipoamide to lipoamide gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3417 YPO3418 YPO3418 aceF aceF 3818758 3820287 - dihydrolipoamide acetyltransferase gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3418 YPO3419 YPO3419 aceE aceE 3820301 3822964 - pyruvate dehydrogenase subunit E1 E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3419 YPO3420 YPO3420 pdhR pdhR 3823160 3823924 - transcriptional regulator PdhR activates lctPRD operon%3B autoregulates itself through repression of pdhR-aceEF-lpdA operon%3B regulates pyruvate dehydrogenase complex gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3420 YPO3421 YPO3421 aroP aroP 3824787 3826184 + aromatic amino acid transport protein gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3421 YPO3422 YPO3422 ampE ampE 3826602 3827456 - regulatory protein AmpE involved in regulation of beta-lactamase%3B signaling protein gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3422 YPO3423 YPO3423 ampD ampD 3827746 3828297 - N-acetyl-anhydromuranmyl-L-alanine amidase gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3423 YPO3424 YPO3424 nadC nadC 3828410 3829318 + quinolinate phosphoribosyltransferase catalyzes the formation of pyridine-2%2C3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3424 YPO3425 YPO3425 ppdD ppdD 3829521 3829985 + major pilin subunit gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3425 YPO3426 YPO3426 hofB hofB 3829978 3831516 + hypothetical protein gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3426 YPO3427 YPO3427 hofC hofC 3831513 3832712 + type IV pilin biogenesis protein gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3427 YPO3428 YPO3428 guaC guaC 3833139 3834182 - guanosine 5'-monophosphate oxidoreductase catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3428 YPO3430 YPO3430 coaE coaE 3834478 3835098 + dephospho-CoA kinase catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A%3B involved in coenzyme A biosynthesis gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3430 YPO3431 YPO3431 YPO3431 3835095 3835847 + hypothetical protein gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3431 YPO3432 YPO3432 YPO3432 3836033 3836239 + zinc-binding protein gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3432 YPO3433 YPO3433 tnp tnp 3836429 3836887 - transposase for the IS1541 insertion element gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3433 YPO3434 YPO3434 y1093 y1093 3836998 3838020 + transposase for insertion sequence IS100 gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3434 YPO3435 YPO3435 YPO3435 3838017 3838799 + transposase/IS protein ypmt1.57c gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3435 YPO3436 YPO3436 YPO3436 3838865 3839959 - gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3436 YPO3437 YPO3437 YPO3437 3839952 3841862 - hypothetical protein gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3437 YPO3438 YPO3438 intB intB 3842016 3843275 - integrase gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3438 YPO3439 YPO3439 YPO3439 3843663 3844739 - hypothetical protein gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3439 YPO3440 YPO3440 YPO3440 3844739 3845833 - hypothetical protein gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3440 YPO3441 YPO3441 pepA pepA 3846113 3847624 + leucyl aminopeptidase catalyzes the removal of N-terminal amino acids preferably leucine from various peptides gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3441 YPO3442 YPO3442 holC holC 3847775 3848224 + DNA polymerase III subunit chi binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3442 YPO3443 YPO3443 valS valS 3848237 3851134 + valyl-tRNA synthetase valine--tRNA ligase%3B ValRS%3B converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val)%3B class-I aminoacyl-tRNA synthetase type 1 subfamily%3B has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3443 YPO3444 YPO3444 YPO3444 3851277 3851780 + acetyltransferase gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3444 YPO3445 YPO3445 YPO3445 3852287 3852718 - hypothetical protein gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3445 YPO3446 YPO3446 argI argI 3852930 3853937 + ornithine carbamoyltransferase subunit I catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation%3B E. coli K12 has two genes%2C argF and argI%2C capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell%2C the two gene products form a family of four hybrid trimeric isoenzymes designated%2C FFF%2C FFI%2C FII%2C and III. gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3446 YPO3447 YPO3447 YPO3447 3854244 3854702 - hypothetical protein gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3447 YPO3448 YPO3448 YPO3448 3855341 3856908 + gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3448 YPO3450 YPO3450 YPO3450 3857004 3858053 + transporter%2C permease gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3450 YPO3451 YPO3451 YPO3451 3858072 3858908 + transporter%2C permease gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3451 YPO3452 YPO3452 YPO3452 3858901 3859779 + ABC transporter ATP-binding protein gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3452 YPO3453 YPO3453 YPO3453 3859781 3860482 + ABC transporter ATP-binding protein gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3453 YPO3454 YPO3454 nrdD nrdD 3860916 3863054 + anaerobic ribonucleoside triphosphate reductase Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3454 YPO3455 YPO3455 nrdG nrdG 3863261 3863695 + anaerobic ribonucleotide reductase-activating protein activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3455 YPO3456 YPO3456 phnF phnF 3864023 3864748 + phosphonate metabolism transcriptional regulator PhnF may be involved in phosphonate uptake and biodegradation gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3456 YPO3457 YPO3457 phnG phnG 3864749 3865225 + PhnG protein gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3457 YPO3458 YPO3458 phnH phnH 3865225 3865851 + carbon-phosphorus lyase complex protein gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3458 YPO3459 YPO3459 phnI phnI 3865851 3867029 + PhnI protein gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3459 YPO3460 YPO3460 phnJ phnJ 3867022 3867903 + PhnJ protein gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3460 YPO3461 YPO3461 phnK phnK 3867903 3868694 + phosphonate C-P lyase system protein PhnK gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3461 YPO3462 YPO3462 phnL phnL 3869083 3869802 + phosphonates transport ATP-binding protein gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3462 YPO3463 YPO3463 phnM phnM 3869799 3870935 + PhnM protein gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3463 YPO3464 YPO3464 phnN phnN 3870935 3871516 + ribose 1%2C5-bisphosphokinase gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3464 YPO3465 YPO3465 phnP phnP 3871507 3872259 + carbon-phosphorus lyase complex accessory protein required for the use of phosphonates and phosphite as phosphorus sources gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3465 YPO3466 YPO3466 YPO3466 3872272 3872910 - hypothetical protein gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3466 YPO3467 YPO3467 YPO3467 3873062 3873505 - hypothetical protein gene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3467 YPO3468 YPO3468 YPO3468 3873604 3874770 - hypothetical protein no significant database hits gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3468 YPO3469 YPO3469 YPO3469 3874785 3875879 - sugar ABC transporter ATP-binding protein gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3469 YPO3470 YPO3470 YPO3470 3875891 3876730 - sugar transport system permease gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3470 YPO3471 YPO3471 YPO3471 3876749 3877633 - sugar transport system permease gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3471 YPO3472 YPO3472 YPO3472 3877641 3878954 - sugar binding protein gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3472 YPO3473 YPO3473 YPO3473 3879512 3880738 + hypothetical protein no significant database matches gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3473 YPO3474 YPO3474 YPO3474 3880762 3882780 + hypothetical protein no significant database hits gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3474 YPO3475 YPO3475 YPO3475 3883011 3883298 + GIY-YIG nuclease superfamily protein gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3475 YPO3476 YPO3476 YPO3476 3883473 3883979 - acetyltransferase gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3476 YPO3477 YPO3477 YPO3477 3883973 3884494 - lipid carrier protein gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3477 YPO3478 YPO3478 YPO3478 3884575 3884700 + hypothetical protein doubtful CDS with no significant database hits. Very low %25G+C gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3478 YPO3479 YPO3479 YPO3479 3884810 3885805 + protease gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3479 YPO3480 YPO3480 YPO3480 3885817 3886695 + hypothetical protein gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3480 YPO3481 YPO3481 ibeB ibeB 3886836 3888242 - outer membrane efflux lipoprotein gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3481 YPO3482 YPO3482 YPO3482 3888244 3891369 - multidrug efflux protein gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3482 YPO3483 YPO3483 YPO3483 3891373 3892533 - multidrug efflux protein gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3483 YPO3484 YPO3484 YPO3484 3893041 3894096 + hypothetical protein gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3484 YPO3485 YPO3485 YPO3485 3894351 3894662 - transcriptional regulator gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3485 YPO3486 YPO3486 YPO3486 3894686 3895054 - hypothetical protein gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3486 YPO3487 YPO3487 YPO3487 3895097 3895270 - hypothetical protein no significant database matches. doubtful CDS. Very low %25GC content gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3487 YPO3488 YPO3488 deaD deaD 3895290 3897284 - ATP-dependent RNA helicase DeaD participates in the assembly of the large subunit of the ribosome%3B plays a key role in optimal cell growth at low temperature and is required for normal cell division gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3488 YPO3489 YPO3489 nlpI nlpI 3897471 3898355 - lipoprotein NlpI lipoprotein that appears to be involved in cell division%3B interacts with the periplasmic protease Prc and may be activated by protease processing gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3489 YPO3490 YPO3490 pnp pnp 3898480 3900597 - polynucleotide phosphorylase gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3490 YPO3491 YPO3491 YPO3491 3900864 3901649 - transposase for insertion sequence IS1661 gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3491 YPO3492 YPO3492 YPO3492 3901703 3902218 - insertion element IS1661 DNA-binding protein gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3492 YPO3493 YPO3493 rpsO rpsO 3902305 3902574 - 30S ribosomal protein S15 primary rRNA binding protein%3B helps nucleate assembly of 30S%3B binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA%3B autoregulates translation through interactions with the mRNA leader sequence gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3493 YPO3494 YPO3494 truB truB 3902696 3903670 - tRNA pseudouridine synthase B catalyzes isomerization of specific uridines in RNA to pseudouridine%3B responsible for residues in T loops of many tRNAs gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3494 YPO3495 YPO3495 rbfA rbfA 3903670 3904080 - ribosome-binding factor A associates with free 30S ribosomal subunits%3B essential for efficient processing of 16S rRNA%3B in Escherichia coli rbfA is induced by cold shock gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3495 YPO3496 YPO3496 infB infB 3904146 3906800 - translation initiation factor IF-2 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3496 YPO3497 YPO3497 nusA nusA 3906825 3908312 - transcription elongation factor NusA modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3497 YPO3498 YPO3498 YPO3498 3908334 3908786 - hypothetical protein in Streptococcus pneumoniae this gene was found to be essential%3B structure determination of the Streptococcus protein shows that it is similar to a number of other proteins gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3498 YPO3499 YPO3499 secG secG 3909318 3909653 - preprotein translocase subunit SecG gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3499 YPO3500 YPO3500 glmM glmM 3909876 3911216 - phosphoglucosamine mutase catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3500 YPO3501 YPO3501 folP folP 3911226 3912059 - dihydropteroate synthase catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7%2C8-dihydropteridine diphosphate and 4-aminobenzoate gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3501 YPO3502 YPO3502 hflB hflB 3912179 3914113 - ATP-dependent metalloprotease inner membrane metalloprotease%3B may be involved in degradation of aberrant cytoplasmic and membrane proteins gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3502 YPO3503 YPO3503 rrmJ rrmJ 3914170 3914799 - 23S rRNA methyltransferase Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3503 YPO3504 YPO3504 YPO3504 3914946 3915239 + hypothetical protein gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3504 YPO3505 YPO3505 greA greA 3915367 3915843 - transcription elongation factor GreA necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3505 YPO3506 YPO3506 dacB dacB 3916101 3917549 + D-alanyl-D-alanine carboxypeptidase/endopeptidase penicillin binding protein 4%3B penicillin sensitive%3B catalyzes the formation of D-alanine from D-alanyl-D-alanine%3B one of four%2C DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3506 YPO3507 YPO3507 basR basR 3917555 3918217 + DNA-binding transcriptional regulator BasR response regulator in two-component regulatory system with BasS gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3507 YPO3508 YPO3508 basS basS 3918214 3919281 + sensor protein BasS/PmrB gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3508 YPO3509 YPO3509 obgE obgE 3919376 3920548 - GTPase ObgE essential GTPase%3B exhibits high exchange rate for GTP/GDP%3B associates with 50S ribosomal subunit%3B involved in regulation of chromosomal replication gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3509 YPO3510 YPO3510 YPO3510 3920549 3921535 - hypothetical protein gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3510 YPO3511 YPO3511 rpmA rpmA 3921623 3921880 - 50S ribosomal protein L27 involved in the peptidyltransferase reaction during translation gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3511 YPO3512 YPO3512 rplU rplU 3921900 3922211 - 50S ribosomal protein L21 gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3512 YPO3513 YPO3513 ispB ispB 3922471 3923442 + octaprenyl diphosphate synthase gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3513 YPO3514 YPO3514 YPO3514 3923539 3923940 - hypothetical protein gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3514 YPO3514a YPO3514a YPO3514a 3924070 3924345 + DNA-binding protein gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3514a YPO3516 YPO3516 mdh mdh 3924779 3925717 - malate dehydrogenase oxidizes malate to oxaloacetate gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3516 YPO3517 YPO3517 argR argR 3926181 3926651 + arginine repressor ArgR regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3517 YPO3518 YPO3518 YPO3518 3927040 3927303 + hypothetical protein gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3518 YPO3519 YPO3519 mpl mpl 3927599 3928981 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase gene gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3519 YPO3520 YPO3520 fbp fbp 3929152 3930165 + fructose-1%2C6-bisphosphatase catalyzes the formation of D-fructose 6-phosphate from fructose-1%2C6-bisphosphate gene gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3520 YPO3521 YPO3521 ppa ppa 3930365 3930892 + inorganic pyrophosphatase catalyzes the hydrolysis of pyrophosphate to phosphate gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3521 YPO3522 YPO3522 YPO3522 3931010 3931366 - hypothetical protein gene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3522 YPO3523 YPO3523 YPO3523 3931369 3935286 - hypothetical protein gene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3523 YPO3524 YPO3524 YPO3524 3935283 3937019 - hypothetical protein gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3524 YPO3525 YPO3525 msrA msrA 3937294 3937932 + methionine sulfoxide reductase A this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form%3B provides protection against oxidative stress gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3525 YPO3526 YPO3526 YPO3526 3938210 3939541 + hypothetical protein gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3526 YPO3527 YPO3527 YPO3527 3939649 3939861 - hypothetical protein gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3527 YPO3528 YPO3528 YPO3528 3940197 3940760 + hypothetical protein gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3528 YPO3529 YPO3529 cysQ cysQ 3940763 3941506 - adenosine-3'(2')%2C5'-bisphosphate nucleotidase catalyzes the formation of AMP from adenosine-3'%2C5'-bisphosphate gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3529 YPO3530 YPO3530 cpdB cpdB 3941938 3943908 + bifunctional 2'%2C3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic enzyme%3B functions during ribonucleic acid degradation%3B 2'%2C3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3530 YPO3531 YPO3531 YPO3531 3944063 3944728 + iron-sulfur cluster repair di-iron protein Involved in anaerobic NO protection and iron metabolism gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3531 YPO3532 YPO3532 fklB fklB 3944826 3945446 - peptidyl-prolyl cis-trans isomerase FKBP-type%3B rotamase%3B catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3532 YPO3533 YPO3533 YPO3533 3945789 3946529 + hypothetical protein gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3533 YPO3534 YPO3534 YPO3534 3946669 3947124 + hypothetical protein no significant database matches gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3534 YPO3535 YPO3535 tnp tnp 3947246 3947704 - transposase for the IS1541 insertion element gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3535 YPO3536 YPO3536 rplI rplI 3947900 3948352 - 50S ribosomal protein L9 in Escherichia coli this protein is wrapped around the base of the L1 stalk gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3536 YPO3537 YPO3537 rpsR rpsR 3948392 3948619 - 30S ribosomal protein S18 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA%3B helps stabilize the platform of the 30S subunit gene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3537 YPO3538 YPO3538 priB priB 3948624 3948944 - primosomal replication protein N binds single-stranded DNA at the primosome assembly site gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3538 YPO3539 YPO3539 rpsF rpsF 3948950 3949342 - 30S ribosomal protein S6 binds cooperatively with S18 to the S15-16S complex%2C allowing platform assembly to continue with S11 and S21 gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3539 YPO3540 YPO3540 YPO3540 3949356 3949634 - hypothetical protein no significant database hits gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3540 YPO3541 YPO3541 YPO3541 3949709 3950380 - gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3541 YPO3542 YPO3542 y1093 y1093 3950467 3951489 + transposase for insertion sequence IS100 gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3542 YPO3543 YPO3543 YPO3543 3951486 3952268 + transposase/IS protein ypmt1.57c gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3543 YPO3544 YPO3544 YPO3544 3952284 3953225 + hypothetical protein gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3544 YPO3545 YPO3545 YPO3545 3953349 3954242 - LysR family transcriptional regulator gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3545 YPO3546 YPO3546 YPO3546 3954504 3955208 + hypothetical protein gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3546 YPO3547 YPO3547 YPO3547 3956145 3957044 - tetrapyrrole methylase gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3547 YPO3548 YPO3548 YPO3548 3957107 3959080 + hypothetical protein gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3548 YPO3549 YPO3549 YPO3549 3959164 3959517 + hypothetical protein gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3549 YPO3550 YPO3550 YPO3550 3959788 3960378 + chromosome replication initiator DnaA Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3550 YPO3551 YPO3551 YPO3551 3960389 3960964 + hypothetical protein gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3551 YPO3552 YPO3552 mtgA mtgA 3961171 3961896 - monofunctional biosynthetic peptidoglycan transglycosylase glycosyltransferase%3B polymerizes glycan strands in the peptidoglycan gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3552 YPO3553 YPO3553 elbB elbB 3961893 3962546 - isoprenoid biosynthesis protein with amidotransferase-like domain gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3553 YPO3555 YPO3555 arcB arcB 3962788 3965124 - aerobic respiration control sensor protein ArcB sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon%3B hybrid sensory histidine kinase in two-component regulatory system with ArcA gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3555 YPO3556 YPO3556 YPO3556 3965388 3966311 - hypothetical protein gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3556 YPO3557 YPO3557 gltB gltB 3967134 3971600 + glutamate synthase subunit alpha catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate gene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3557 YPO3558 YPO3558 gltD gltD 3971610 3973028 + glutamate synthase subunit beta glutamate synthase is composed of subunits alpha and beta%3B beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase%3B provides electrons to the alpha subunit%2C which binds L-glutamine and 2-oxoglutarate and forms L-glutamate gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3558 YPO3559 YPO3559 YPO3559 3973469 3973954 + hypothetical protein gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3559 YPO3560 YPO3560 sspB sspB 3974107 3974622 - ClpXP protease specificity-enhancing factor gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3560 YPO3561 YPO3561 sspA sspA 3974628 3975269 - stringent starvation protein A transcriptional activator%3B required for activation of bacteriophage P1 late promoter%3B induced by starvation gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3561 YPO3562 YPO3562 rpsI rpsI 3975643 3976035 - 30S ribosomal protein S9 forms a direct contact with the tRNA during translation gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3562 YPO3563 YPO3563 rplM rplM 3976050 3976478 - 50S ribosomal protein L13 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3563 YPO3564 YPO3564 YPO3564 3976792 3977919 - hypothetical protein gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3564 YPO3565 YPO3565 YPO3565 3978143 3978547 + cytochrome d ubiquinol oxidase subunit III gene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3565 YPO3566 YPO3566 degQ degQ 3978818 3980191 + protease gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3566 YPO3567 YPO3567 tnp tnp 3980308 3980766 - transposase for the IS1541 insertion element gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3567 YPO3568 YPO3568 degS degS 3980992 3982080 + serine endoprotease gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3568 YPO3569 YPO3569 murA murA 3982261 3983523 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation%3B gram-positive bacteria have 2 copies of MurA which are active gene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3569 YPO3570 YPO3570 YPO3570 3983677 3983940 - BolA-like protein gene gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3570 YPO3571 YPO3571 YPO3571 3984078 3984380 - anti-sigma B factor antagonist gene gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3571 YPO3572 YPO3572 yrbC yrbC 3984416 3985039 - hypothetical protein gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3572 YPO3573 YPO3573 yrbD yrbD 3985052 3985609 - hypothetical protein gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3573 YPO3574 YPO3574 yrbE yrbE 3985614 3986396 - hypothetical protein gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3574 YPO3575 YPO3575 yrbF yrbF 3986614 3987432 - ABC transporter ATP-binding protein YrbF ATP-binding subunit of a ABC toluene efflux transporter gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3575 YPO3576 YPO3576 yrbG yrbG 3987697 3988671 + calcium/sodium:proton antiporter YrbG%3B inner membrane protein involved in cell envelope integrity%3B sodium ion/calcium ion exchanger%3B in E. coli it is non essential for cell viability%3B member of the YRBG family of cation/Ca2+ exchangers gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3576 YPO3577 YPO3577 YPO3577 3988782 3989768 + D-arabinose 5-phosphate isomerase gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3577 YPO3578 YPO3578 YPO3578 3990017 3990580 + 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase forms homotetramers%3B catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate%3B functions in lipopolysaccharide biosynthesis gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3578 YPO3579 YPO3579 yrbK yrbK 3990577 3991140 + hypothetical protein gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3579 YPO3580 YPO3580 YPO3580 3991124 3991669 + lipopolysaccharide transport periplasmic protein LptA LptA%3B periplasmic binding protein part of a ABC superfamily of uptake transporters%3B interacts with LptB protein%2C the ATP binding component of the uptake system gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3580 YPO3581 YPO3581 yhbG yhbG 3991676 3992401 + ABC transporter ATP-binding protein YhbG gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3581 YPO3582 YPO3582 rpoN rpoN 3992463 3993896 + RNA polymerase factor sigma-54 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism%3B the rhizobia often have 2 copies of this sigma factor%3B in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation%3B in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions%2C rpoN1 gene was regulated in response to oxygen gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3582 YPO3583 YPO3583 yhbH yhbH 3993920 3994207 + gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3583 YPO3585 YPO3585 ptsN ptsN 3994325 3994807 + PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3585 YPO3586 YPO3586 YPO3586 3995113 3995967 + hypothetical protein gene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3586 YPO3587 YPO3587 ptsO ptsO 3995964 3996236 + N-regulated PTS system (Npr) phosphohistidinoprotein-hexose phosphotransferase gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3587 YPO3588 YPO3588 pyrB pyrB 3996574 3997509 + aspartate carbamoyltransferase catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3588 YPO3589 YPO3589 pyrI pyrI 3997521 3997985 + aspartate carbamoyltransferase involved in the allosteric regulation of aspartate carbamoyltransferase gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3589 YPO3590 YPO3590 YPO3590 3998123 3998509 + hypothetical protein gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3590 YPO3591 YPO3591 y1093 y1093 3998850 3999872 + transposase for insertion sequence IS100 gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3591 YPO3592 YPO3592 YPO3592 3999869 4000651 + transposase/IS protein ypmt1.57c gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3592 YPO3593 YPO3593 YPO3593 4000981 4001718 + gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3593 YPO3594 YPO3594 YPO3594 4001721 4002770 + hypothetical protein gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3594 YPO3595 YPO3595 YPO3595 4002896 4004212 + hypothetical protein gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3595 YPO3596 YPO3596 YPO3596 4004212 4004757 + lipoprotein gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3596 YPO3597 YPO3597 YPO3597 4004760 4006106 + hypothetical protein gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3597 YPO3598 YPO3598 YPO3598 4006106 4006873 + hypothetical protein gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3598 YPO3599 YPO3599 clpB2 clpB2 4006884 4009487 + Clp ATPase gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3599 YPO3600 YPO3600 YPO3600 4009484 4010281 + hypothetical protein no significant database hits gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3600 YPO3601 YPO3601 YPO3601 4010278 4010964 + hypothetical protein gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3601 YPO3602 YPO3602 YPO3602 4010961 4012358 + hypothetical protein gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3602 YPO3603 YPO3603 YPO3603 4012390 4015923 + hypothetical protein gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3603 YPO3604 YPO3604 YPO3604 4016048 4017360 + gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3604 YPO3606 YPO3606 YPO3606 4017382 4019784 + Rhs accessory genetic element gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3606 YPO3607 YPO3607 YPO3607 4019790 4020248 + hypothetical protein gene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3607 YPO3608 YPO3608 YPO3608 4020241 4024503 + gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3608 YPO3610 YPO3610 YPO3610 4024505 4024990 + hypothetical protein gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3610 YPO3611 YPO3611 YPO3611 4025040 4025231 - hypothetical protein no significant database hits gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3611 YPO3611a YPO3611a YPO3611a 4025307 4025531 - hypothetical protein gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3611a YPO3612 YPO3612 YPO3612 4025613 4026020 - transcriptional regulator gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3612 YPO3613 YPO3613 YPO3613 4026381 4028579 + Rhs accessory genetic element gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3613 YPO3614 YPO3614 YPO3614 4028582 4029004 + hypothetical protein gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3614 YPO3615 YPO3615 YPO3615 4029049 4033587 + hypothetical protein gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3615 YPO3616 YPO3616 YPO3616 4033596 4034390 + hypothetical protein gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3616 YPO3617 YPO3617 YPO3617 4034737 4035636 - hypothetical protein no significant database hits gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3617 YPO3618 YPO3618 YPO3618 4035633 4036763 - oxidoreductase gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3618 YPO3619 YPO3619 YPO3619 4036958 4037899 + AraC family transcriptional regulator gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3619 YPO3620 YPO3620 YPO3620 4038061 4038564 - carbohydrate transport protein gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3620 YPO3621 YPO3621 YPO3621 4038570 4039502 - carbohydrate kinase gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3621 YPO3622 YPO3622 YPO3622 4039656 4040357 - deoxyribose-phosphate aldolase gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3622 YPO3623 YPO3623 ssuE ssuE 4040828 4041409 + NAD(P)H-dependent FMN reductase gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3623 YPO3624 YPO3624 ssuA ssuA 4041424 4042545 + alkanesulfonate transporter substrate-binding protein part of the ABC type transport system SsuABC for aliphatic sulfonates%3B with SsuA being the periplasmic subunit SsuB the ATP-binding subunit and SsuC the permease gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3624 YPO3625 YPO3625 ssuD ssuD 4042564 4043712 + alkanesulfonate monooxygenase catalyzes the release of sulfite from alkanesulfonates gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3625 YPO3626 YPO3626 ssuC ssuC 4043721 4044518 + aliphatic sulfonates transporter permease gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3626 YPO3627 YPO3627 ssuB ssuB 4044515 4045330 + aliphatic sulfonates transporter ATP-binding protein part of the ABC type transport system SsuABC for aliphatic sulfonates%3B with SsuA being the periplasmic substrate-binding subunit%2C SsuB the ATP-binding subunit and SsuC the permease gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3627 YPO3629 YPO3629 yjcD yjcD 4046606 4047961 + xanthine/uracil permease gene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3629 YPO3630 YPO3630 yjcE yjcE 4048310 4049959 + Na(+)/H(+) exchanger protein gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3630 YPO3631 YPO3631 YPO3631 4050177 4051364 - hypothetical protein no significant database matches gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3631 YPO3632 YPO3632 ddg ddg 4051516 4052436 - lipid A biosynthesis palmitoleoyl acyltransferase Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3632 YPO3633 YPO3633 YPO3633 4053161 4054219 + periplasmic binding protein gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3633 YPO3634 YPO3634 YPO3634 4054423 4055919 + ABC transporter ATP-binding protein gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3634 YPO3635 YPO3635 YPO3635 4055912 4056901 + branched-chain amino acid transporter permease gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3635 YPO3636 YPO3636 YPO3636 4056903 4057856 + ABC transporter permease gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3636 YPO3637 YPO3637 YPO3637 4057875 4059512 + carbohydrate kinase gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3637 YPO3638 YPO3638 YPO3638 4059509 4060114 + phosphosugar isomerase/binding protein gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3638 YPO3639 YPO3639 yghU yghU 4060304 4061158 - glutathione S-transferase YghU YghU%3B B2989%3B one of eight glutathione transferase proteins from E. coli gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3639 YPO3640 YPO3640 YPO3640 4061409 4062755 + hypothetical protein gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3640 YPO3641 YPO3641 YPO3641 4062862 4064037 - hypothetical protein no significant database hits gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3641 YPO3642 YPO3642 tnp tnp 4064442 4064900 + transposase for the IS1541 insertion element gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3642 YPO3642a YPO3642a YPO3642a 4065032 4065469 - ncRNA-cspA thermoregulator ncRNA gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3642a YPO3642b YPO3642b YPO3642b 4065504 4065946 - ncRNA-cspA thermoregulator ncRNA gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3642b YPO3643 YPO3643 cspa2 cspa2 4065083 4065295 - cold-shock protein CspA gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3643 YPO3644 YPO3644 cspa1 cspa1 4065555 4065767 - cold-shock protein CspA gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3644 YPO3646 YPO3646 pcp pcp 4066300 4066767 - outer membrane lipoprotein gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3646 YPO3647 YPO3647 YPO3647 4067228 4068055 + hypothetical protein gene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3647 YPO3648 YPO3648 YPO3648 4068120 4069010 + 2-hydroxy-3-oxopropionate reductase gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3648 YPO3649 YPO3649 YPO3649 4069188 4069583 + gamma carboxymuconolactone decarboxylase gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3649 YPO3650 YPO3650 YPO3650 4069737 4071101 + metabolite transport protein gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3650 YPO3651 YPO3651 YPO3651 4071191 4071853 + GntR family transcriptional regulator gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3651 YPO3652 YPO3652 YPO3652 4071919 4072395 + hypothetical protein no significant database hits gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3652 YPO3653 YPO3653 YPO3653 4072626 4072745 + colicin immunity protein gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3653 YPO3654 YPO3654 fis fis 4073149 4073445 - Fis family transcriptional regulator Stimulates excision of phage lambda%3B affects Mu development%3B acts as an activator of rRNA and iRNA transcription gene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3654 YPO3655 YPO3655 YPO3655 4073470 4074435 - tRNA-dihydrouridine synthase B gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3655 YPO3656 YPO3656 prmA prmA 4075024 4075905 - ribosomal protein L11 methyltransferase methylates ribosomal protein L11 at multiple amino acid positions%3B mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3656 YPO3657 YPO3657 panF panF 4075981 4077435 - sodium/panthothenate symporter mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions%3B member of SSS family of sodium/solute symporters%3B the imported panthothenate is phosphorylated by panthothenate kinase gene gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3657 YPO3657a YPO3657a yhdT yhdT 4077425 4077667 - hypothetical protein gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3657a YPO3658 YPO3658 accC accC 4079025 4080374 - acetyl-CoA carboxylase biotin carboxylase subunit an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase%2C an enzyme that catalyzes the formation of malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3658 YPO3659 YPO3659 accB accB 4080386 4080850 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex%2C the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3659 YPO3660 YPO3660 aroQ aroQ 4081008 4081460 - 3-dehydroquinate dehydratase catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3660 YPO3661 YPO3661 YPO3661 4081723 4082343 - sulfite oxidase subunit YedZ in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY%3B sulfite oxidase activity not demonstrated%3B contains heme gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3661 YPO3662 YPO3662 YPO3662 4082343 4083443 - sulfite oxidase subunit YedY in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase%3B sulfite oxidase activity not demonstrated%3B requires inner membrane anchor protein YedZ gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3662 YPO3663 YPO3663 yhdH yhdH 4083666 4084643 - zinc-binding dehydrogenase gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3663 YPO3664 YPO3664 yhdA yhdA 4085044 4086960 + regulatory protein CsrD regulates the degradation of the small RNAs CsrB and CsrC%3B may function to targate RNase E to specific RNA molecules gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3664 YPO3665 YPO3665 envB envB 4087297 4088340 + rod shape-determining protein MreB functions in MreBCD complex in some organisms gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3665 YPO3666 YPO3666 mreC mreC 4088544 4089539 + rod shape-determining protein MreC in some organisms this protein is a transmembrane protein while in others it is periplasmic%3B involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3666 YPO3667 YPO3667 mreD mreD 4089536 4090024 + rod shape-determining protein MreD part of cell wall structural complex MreBCD%3B transmembrane component gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3667 YPO3668 YPO3668 maf maf 4090038 4090631 + Maf-like protein Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3668 YPO3669 YPO3669 cafA cafA 4090621 4092090 + ribonuclease G involved in the processing of the 5'end of 16S rRNA gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3669 YPO3670 YPO3670 YPO3670 4092184 4096107 + hypothetical protein gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3670 YPO3671 YPO3671 YPO3671 4096104 4096973 + carbon-nitrogen hydrolase gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3671 YPO3672 YPO3672 tldD tldD 4096985 4098430 + protease TldD responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17%2C an exported protein that targets the essential topoisomerase II DNA gyrase%3B degrades the E. coli plasmid F-encoded CcdA gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3672 YPO3673 YPO3673 YPO3673 4098633 4101491 - insecticidal toxin gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3673 YPO3674 YPO3674 YPO3674 4101516 4104551 - insecticidal toxin gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3674 YPO3675 YPO3675 YPO3675 4104548 4104907 - hypothetical protein no significant database matches gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3675 YPO3676 YPO3676 YPO3676 4104904 4105305 - hypothetical protein gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3676 YPO3677 YPO3677 YPO3677 4105318 4105620 - hypothetical protein gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3677 YPO3678 YPO3678 tcaC tcaC 4105754 4110244 - insecticidal toxin complex gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3678 YPO3679 YPO3679 tcaB tcaB 4110301 4113893 - gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3679 YPO3681 YPO3681 YPO3681 4113934 4116435 - insecticial toxin gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3681 YPO3682 YPO3682 YPO3682 4116671 4117537 - LysR family transcriptional regulator gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3682 YPO3683 YPO3683 YPO3683 4117798 4118709 - DNA-binding transcriptional regulator gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3683 YPO3684 YPO3684 YPO3684 4119012 4119215 + hypothetical protein membrane protein AaeX%3B the gene is a member of the aaeXAB operon gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3684 YPO3685 YPO3685 yhcQ yhcQ 4119223 4120158 + p-hydroxybenzoic acid efflux subunit AaeA with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid%2C 6-hydroxy-2-naphthoic and 2-hydroxycinnamate gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3685 YPO3686 YPO3686 yhcP yhcP 4120160 4122115 + p-hydroxybenzoic acid efflux subunit AaeB with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3686 YPO3687 YPO3687 YPO3687 4122382 4123850 + gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3687 YPO3689 YPO3689 YPO3689 4124060 4124518 + ribonuclease gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3689 YPO3690 YPO3690 YPO3690 4124523 4124804 + ribonuclease inhibitor gene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3690 YPO3691 YPO3691 YPO3691 4124916 4125464 - hypothetical protein gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3691 YPO3692 YPO3692 pmbA pmbA 4125645 4126985 + peptidase PmbA protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3692 YPO3693 YPO3693 YPO3693 4127240 4127878 + hypothetical protein gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3693 YPO3694 YPO3694 YPO3694 4128086 4128472 + cytochrome gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3694 YPO3695 YPO3695 rnk rnk 4128696 4129106 - nucleoside diphosphate kinase regulator Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis%2C CTP for lipid synthesis%2C and GTP for protein elongation gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3695 YPO3696 YPO3696 treC treC 4129459 4131126 - trehalose-6-phosphate hydrolase gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3696 YPO3697 YPO3697 treB treB 4131221 4132636 - PTS system trehalose(maltose)-specific transporter subunits IIBC phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3697 YPO3698 YPO3698 treR treR 4133047 4134000 - trehalose repressor regulates genes involved in trehalose metabolism%3B binds the intermediate trehalose-6-phosphate%3B binds a dimer%3B regulates treBC operon gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3698 YPO3699 YPO3699 YPO3699 4134234 4134710 - hypothetical protein no significant database matches gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3699 YPO3700 YPO3700 YPO3700 4134826 4135608 - transposase/IS protein ypmt1.57c gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3700 YPO3701 YPO3701 y1093 y1093 4135605 4136627 - transposase for insertion sequence IS100 gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3701 YPO3703 YPO3703 YPO3703 4137082 4137867 + transposase for insertion sequence IS1661 gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3703 YPO3704 YPO3704 YPO3704 4137910 4138983 - gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3704 YPO3705 YPO3705 YPO3705 4138983 4139423 - hypothetical protein gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3705 YPO3706 YPO3706 YPO3706 4139430 4140911 - hypothetical protein gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3706 YPO3707 YPO3707 YPO3707 4140979 4141476 - hypothetical protein gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3707 YPO3708 YPO3708 YPO3708 4142000 4142518 + hypothetical protein gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3708 YPO3709 YPO3709 YPO3709 4142670 4143008 - hypothetical protein no significant database hits gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3709 YPO3710 YPO3710 malM malM 4143419 4144348 - maltose regulon periplasmic protein gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3710 YPO3711 YPO3711 lamB lamB 4144571 4145842 - maltoporin porin involved in the transport of maltose and maltodextrins gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3711 YPO3712 YPO3712 malK malK 4145913 4147022 - maltose ABC transporter ATP-binding protein with malEFG is involved in import of maltose/maltodextrin gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3712 YPO3713 YPO3713 YPO3713 4147026 4147262 - hypothetical protein no significant database hits gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3713 YPO3714 YPO3714 malE malE 4147824 4149035 + maltose ABC transporter substrate-binding protein functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3714 YPO3715 YPO3715 malF malF 4149222 4150799 + maltose transporter membrane protein with MalKGE is involved in maltose transport into the cell gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3715 YPO3716 YPO3716 malG malG 4150813 4151703 + maltose ABC transporter permease with MalKFE is involved in the transport of maltose into the cell gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3716 YPO3717 YPO3717 yjbA yjbA 4151846 4152253 - phosphate-starvation-inducible protein PsiE gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3717 YPO3718 YPO3718 pgi pgi 4152388 4154034 - glucose-6-phosphate isomerase functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis%3B catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate%3B member of PGI family gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3718 YPO3719 YPO3719 lysC lysC 4154404 4155789 + aspartate kinase catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP%3B functions in amino acid biosynthesis%3B lysine sensitive gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3719 YPO3720 YPO3720 hpmB hpmB 4156357 4158042 + hemolysin activator protein gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3720 YPO3721 YPO3721 YPO3721 4158112 4163019 + hemolysin gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3721 YPO3722 YPO3722 metH metH 4163115 4166810 - B12-dependent methionine synthase one of two methionine synthases in Escherichia coli%3B MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine%3B requires zinc for activity gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3722 YPO3723 YPO3723 iclR iclR 4167025 4167869 + gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3723 YPO3724 YPO3724 aceK aceK 4167989 4169716 - bifunctional isocitrate dehydrogenase kinase/phosphatase protein catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity%3B unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3724 YPO3725 YPO3725 aceA aceA 4169972 4171279 - isocitrate lyase gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3725 YPO3726 YPO3726 aceB aceB 4171326 4172924 - malate synthase Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3726 YPO3727 YPO3727 metA metA 4173345 4174274 - homoserine O-succinyltransferase catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3727 YPO3728 YPO3728 purH purH 4181118 4182707 + bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase involved in de novo purine biosynthesis gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3728 YPO3728a YPO3728a YPO3728a 4180465 4180650 + hypothetical protein gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3728a YPO3729 YPO3729 purD purD 4182767 4184053 + phosphoribosylamine--glycine ligase catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3729 YPO3730 YPO3730 yjaH yjaH 4184201 4184902 - hypothetical protein gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3730 YPO3731 YPO3731 hupA hupA 4184904 4185179 - transcriptional regulator HU subunit alpha histone-like DNA-binding protein gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3731 YPO3732 YPO3732 YPO3732 4185368 4185958 - hypothetical protein gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3732 YPO3733 YPO3733 nfi nfi 4186004 4186708 - endonuclease V Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA%3B cleaves DNA containing urea residues%2C AP sites%2C base mismatches%2C insertion/deletion mismatches%2C flaps%2C and pseudo-Y structures gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3733 YPO3734 YPO3734 hemE hemE 4186774 4187841 - uroporphyrinogen decarboxylase catalyzes the formation of coproporphyrinogen from uroporphyrinogen III gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3734 YPO3735 YPO3735 YPO3735 4187960 4188745 - hypothetical protein no significant database hits gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3735 YPO3736 YPO3736 nudC nudC 4188838 4189620 - NADH pyrophosphatase can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH%3B requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates gene gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3736 YPO3737 YPO3737 rsd rsd 4189717 4190226 + anti-RNA polymerase sigma 70 factor binds specifically to the major sigma factor sigma 70%3B active in stationary phase gene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3737 YPO3738 YPO3738 YPO3738 4190349 4190609 + hypothetical protein no significant database hits gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3738 YPO3739 YPO3739 thiC thiC 4190602 4192647 + thiamine biosynthesis protein ThiC required for the synthesis of the hydromethylpyrimidine moiety of thiamine gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3739 YPO3740 YPO3740 thiE thiE 4192661 4193308 + thiamine-phosphate pyrophosphorylase catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate gene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3740 YPO3741 YPO3741 thiF thiF 4193298 4194095 + thiamine biosynthesis protein ThiF gene gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3741 YPO3741a YPO3741a YPO3741a 4194116 4194307 + sulfur carrier protein ThiS gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3741a YPO3742 YPO3742 thiG thiG 4194309 4195124 + thiazole synthase functions in thiamine (vitamin B1) biosynthesis%3B in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3742 YPO3743 YPO3743 thiH thiH 4195117 4196247 + thiamine biosynthesis protein ThiH in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS%3B with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine%2C cysteine and 1-deoxy-D-xylulose-5-phosphate%3B forms a complex with ThiG%3B contains an iron-sulfur center gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3743 YPO3744 YPO3744 YPO3744 4196290 4196403 - hypothetical protein no significant database hits gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3744 YPO3745 YPO3745 tnp tnp 4196679 4197137 + transposase for the IS1541 insertion element gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3745 YPO3746 YPO3746 rpoC rpoC 4197264 4201484 - DNA-directed RNA polymerase subunit beta' DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter gene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3746 YPO3747 YPO3747 rpoB rpoB 4201613 4205641 - DNA-directed RNA polymerase subunit beta DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates%3B beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme gene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3747 YPO3748 YPO3748 rplL rplL 4205984 4206352 - 50S ribosomal protein L7/L12 present in two forms%3B L12 is normal%2C while L7 is aminoacylated at the N-terminal serine%3B the only multicopy ribosomal protein%3B 4:1 ratio of L7/L12 per ribosome%3B two L12 dimers bind L10%3B critically important for translation efficiency and fidelity%3B stimulates GTPase activity of translation factors gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3748 YPO3749 YPO3749 rplJ rplJ 4206419 4206916 - 50S ribosomal protein L10 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3749 YPO3750 YPO3750 rplA rplA 4207281 4207985 - 50S ribosomal protein L1 in Escherichia coli and Methanococcus%2C this protein autoregulates expression%3B the binding site in the mRNA mimics the binding site in the 23S rRNA gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3750 YPO3751 YPO3751 rplK rplK 4207989 4208417 - 50S ribosomal protein L11 binds directly to 23S ribosomal RNA gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3751 YPO3752 YPO3752 nusG nusG 4208608 4209153 - transcription antitermination protein NusG Modulates Rho-dependent transcription termination gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3752 YPO3753 YPO3753 secE secE 4209155 4209538 - preprotein translocase subunit SecE forms a complex with SecY and SecG%3B SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane%2C a process driven by ATP and a proton-motive force gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3753 YPO3754 YPO3754 tuf tuf 4209789 4210973 - elongation factor Tu EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3754 YPO3755 YPO3755 YPO3755 4212030 4212812 - transposase/IS protein ypmt1.57c gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3755 YPO3756 YPO3756 y1093 y1093 4212809 4213831 - transposase for insertion sequence IS100 gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3756 YPO3757 YPO3757 YPO3757 4213921 4214472 + acetyltransferase gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3757 YPO3758 YPO3758 coaA coaA 4214683 4215633 + pantothenate kinase catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3758 YPO3759 YPO3759 birA birA 4215668 4216627 - biotin--protein ligase catalyzes the formation of biotinyl-5'-AMP%2C also acts as a transcriptional repressor of the biotin operon gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3759 YPO3760 YPO3760 murB murB 4216624 4217661 - UDP-N-acetylenolpyruvoylglucosamine reductase catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3760 YPO3760a YPO3760a YPO3760a 4223329 4223514 + hypothetical protein gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3760a YPO3761 YPO3761 hemG hemG 4223798 4224331 - protoporphyrinogen oxidase catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3761 YPO3762 YPO3762 trkH trkH 4224353 4225804 - potassium transporter gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3762 YPO3764 YPO3764 tnp tnp 4226393 4226851 - transposase for the IS1541 insertion element gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3764 YPO3764a YPO3764a YPO3764a 4225844 4226320 - hypothetical protein gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3764a YPO3765 YPO3765 pepQ pepQ 4227165 4228496 - proline dipeptidase catalyzes the hydrolysis of dipeptides with a proline at the C-terminal%3B also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3765 YPO3766 YPO3766 fadB fadB 4228823 4231012 + multifunctional fatty acid oxidation complex subunit alpha includes enoyl-CoA hydratase%2C delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase%2C 3-hydroxyacyl-CoA dehydrogenase%2C and 3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities%3B forms a heterotetramer with FadA%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3766 YPO3767 YPO3767 fadA fadA 4231024 4232187 + 3-ketoacyl-CoA thiolase FadA%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadB%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3767 YPO3768 YPO3768 fre fre 4232347 4233048 - FMN reductase NAD(P)H-flavin reductase%3B catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide%3B in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3768 YPO3769 YPO3769 YPO3769 4233103 4234599 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3769 YPO3770 YPO3770 rfaH rfaH 4234847 4235335 + transcriptional activator RfaH gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3770 YPO3771 YPO3771 hemB hemB 4235445 4236467 - delta-aminolevulinic acid dehydratase catalyzes the formation of porphobilinogen from 5-aminolevulinate gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3771 YPO3773 YPO3773 YPO3773 4236856 4237638 - transposase/IS protein ypmt1.57c gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3773 YPO3774 YPO3774 y1093 y1093 4237635 4238657 - transposase for insertion sequence IS100 gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3774 YPO3776 YPO3776 tatC tatC 4239279 4240055 - twin-arginine protein translocation system subunit TatC with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3776 YPO3777 YPO3777 mtta2 mtta2 4240058 4240720 - Sec-independent protein translocase protein TatB gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3777 YPO3778 YPO3778 mtta1 mtta1 4240724 4240990 - Sec-independent protein translocase protein TatA gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3778 YPO3779 YPO3779 ubiB ubiB 4241170 4242801 - ubiquinone biosynthesis protein UbiB an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone%3B functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis%3B similar to eukaryotic proteins that exhibit kinase functions gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3779 YPO3780 YPO3780 YPO3780 4242801 4243433 - hypothetical protein gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3780 YPO3781 YPO3781 ubiE ubiE 4243465 4244220 - ubiquinone/menaquinone biosynthesis methyltransferase Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3781 YPO3782 YPO3782 rumC rumC 4244312 4245745 - DNA recombination protein gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3782 YPO3783 YPO3783 YPO3783 4246025 4246555 - hypothetical protein gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3783 YPO3784 YPO3784 YPO3784 4246827 4248644 - carbon starvation protein gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3784 YPO3785 YPO3785 YPO3785 4249002 4249832 - hypothetical protein gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3785 YPO3786 YPO3786 udp udp 4249953 4250714 - uridine phosphorylase catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate%3B involved in the pyrimidine salvage pathway gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3786 YPO3787 YPO3787 YPO3787 4251211 4252014 + carboxymethylenebutenolidase gene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3787 YPO3788 YPO3788 metE metE 4252069 4254345 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine gene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3788 YPO3789 YPO3789 metR metR 4254451 4255404 + LysR family transcriptional regulator gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3789 YPO3790 YPO3790 yigM yigM 4255292 4256191 - hypothetical protein gene gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3790 YPO3791 YPO3791 YPO3791 4256573 4257499 - hypothetical protein gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3791 YPO3792 YPO3792 ugpQ ugpQ 4257600 4258349 - cytoplasmic glycerophosphodiester phosphodiesterase hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol%3B induced when cells are starved for inorganic phosphate gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3792 YPO3793 YPO3793 ugpC ugpC 4258346 4259419 - glycerol-3-phosphate transporter ATP-binding protein part of the UgpABCE glycerol-3-phosphate uptake system gene gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3793 YPO3794 YPO3794 ugpE ugpE 4259426 4260271 - glycerol-3-phosphate transporter membrane protein with UgpABC is involved in uptake of glycerol-3-phosphate gene gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3794 YPO3795 YPO3795 ugpA ugpA 4260268 4261155 - glycerol-3-phosphate transporter permease with UgpEC is involved in the uptake of glycerol-3-phosphate gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3795 YPO3796 YPO3796 ugpB ugpB 4261453 4262772 - glycerol-3-phosphate transporter substrate-binding protein with UgpACE is involved in the uptake of glycerol-3-phosphate gene gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3796 YPO3797 YPO3797 YPO3797 4263327 4263818 + hypothetical protein gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3797 YPO3798 YPO3798 YPO3798 4264085 4266418 + hypothetical protein gene gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3798 YPO3799 YPO3799 YPO3799 4266436 4267122 + hypothetical protein gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3799 YPO3800 YPO3800 YPO3800 4267094 4267741 + hypothetical protein gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3800 YPO3801 YPO3801 YPO3801 4267803 4268321 + hypothetical protein gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3801 YPO3802 YPO3802 YPO3802 4268434 4269540 + hypothetical protein no significant database matches gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3802 YPO3803 YPO3803 YPO3803 4269655 4270116 - hypothetical protein no significant database hits gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3803 YPO3804 YPO3804 livF livF 4270344 4271045 - leucine/isoleucine/valine transporter ATP-binding protein with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3804 YPO3805 YPO3805 livG livG 4271090 4271857 - leucine/isoleucine/valine transporter ATP-binding protein Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3805 YPO3806 YPO3806 livM livM 4271854 4273140 - leucine/isoleucine/valine transporter permease Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine gene gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3806 YPO3807 YPO3807 livH livH 4273137 4274063 - branched-chain amino acid transporter permease LivH LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter gene gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3807 YPO3808 YPO3808 livJ livJ 4274244 4275359 - branched-chain amino acid-binding protein gene gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3808 YPO3809 YPO3809 yhhK yhhK 4275781 4276173 + acetyltransferase gene gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3809 YPO3810 YPO3810 tnp tnp 4276419 4276877 - transposase for the IS1541 insertion element gene gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3810 YPO3811 YPO3811 rpoH rpoH 4277091 4277948 - RNA polymerase factor sigma-32 binds with the catalytic core of RNA polymerase to produce the holoenzyme%3B this sigma factor is responsible for the expression of heat shock promoters gene gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3811 YPO3812 YPO3812 ftsX ftsX 4278259 4279212 - cell division protein FtsX ABC transporter%2C membrane protein gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3812 YPO3813 YPO3813 ftsE ftsE 4279202 4279870 - cell division protein FtsE ATP-binding protein of an ATP-binding cassette transporter%3B when bound to FtsX%2C FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3813 YPO3814 YPO3814 ftsY ftsY 4279876 4281501 - cell division protein gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3814 YPO3815 YPO3815 YPO3815 4281530 4281673 + hypothetical protein no significant database hits gene gene3711 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3815 YPO3816 YPO3816 rsmD rsmD 4281783 4282445 + 16S rRNA m(2)G966-methyltransferase catalyzes the methylation of 16S rRNA at position G966 gene gene3712 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3816 YPO3816a YPO3816a yhhL yhhL 4282435 4282707 + hypothetical protein gene gene3713 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3816a YPO3817 YPO3817 YPO3817 4282894 4283313 - hypothetical protein gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3817 YPO3818 YPO3818 YPO3818 4283525 4283845 - hypothetical protein gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3818 YPO3819 YPO3819 yhhN yhhN 4284135 4284761 + hypothetical protein gene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3819 YPO3820 YPO3820 zntA zntA 4285175 4287541 + zinc/cadmium/mercury/lead-transporting ATPase P-type ATPase involved in the export of lead%2C cadmium%2C zinc and mercury gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3820 YPO3821 YPO3821 YPO3821 4287625 4287879 - sulfur transfer protein SirA TusA%3B transfers sulfur to TusBCD complex%3B involved in thiouridation of U34 position of some tRNAs gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3821 YPO3822 YPO3822 yhhQ yhhQ 4288163 4288831 + hypothetical protein gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3822 YPO3823 YPO3823 dcrB dcrB 4288961 4289488 + hypothetical protein gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3823 YPO3824 YPO3824 glpC glpC 4289650 4290945 - sn-glycerol-3-phosphate dehydrogenase subunit C anaerobic%3B with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3824 YPO3825 YPO3825 glpB glpB 4290942 4292216 - anaerobic glycerol-3-phosphate dehydrogenase subunit B sn-glycerol-3-phosphate dehydrogenase (anaerobic)%3B catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate%3B part of GlpABC complex%3B presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3825 YPO3826 YPO3826 glpA glpA 4292206 4293861 - sn-glycerol-3-phosphate dehydrogenase subunit A anaerobic%2C catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3826 YPO3827 YPO3827 glpQ glpQ 4294486 4295601 + glycerophosphodiester phosphodiesterase hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols%3B periplasmic gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3827 YPO3828 YPO3828 YPO3828 4295675 4296727 - hypothetical protein no significant database hits gene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3828 YPO3829 YPO3829 YPO3829 4297143 4297952 - sugar phosphatase purine and pyrimidine nucleotides are secondary substrates%3B yigL expression is regulated by heat shock%2C osmotic shock and starvation of glucose%2C phosphate or ammonium gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3829 YPO3830 YPO3830 pldB pldB 4297987 4299000 - lysophospholipase L2 lecithinase B%3B catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine%3B can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3830 YPO3831 YPO3831 rhtB rhtB 4299196 4299816 + homoserine/homoserine lactone efflux protein gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3831 YPO3832 YPO3832 rhtC rhtC 4299867 4300487 - threonine efflux system gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3832 YPO3833 YPO3833 recQ recQ 4300594 4302426 - ATP-dependent DNA helicase RecQ functions in blocking illegitimate recombination%2C enhancing topoisomerase activity%2C initiating SOS signaling and clearing blocked replication forks%3B component of the RecF recombinational pathway gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3833 YPO3834 YPO3834 pldA pldA 4302504 4303382 - phospholipase A catalyzes the hydrolysis of phosphatidylcholine gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3834 YPO3835 YPO3835 YPO3835 4303604 4304074 + hypothetical protein gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3835 YPO3836 YPO3836 rarD rarD 4304161 4305051 + hypothetical protein gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3836 YPO3837 YPO3837 corA corA 4305149 4306099 - magnesium/nickel/cobalt transporter CorA responsible for the influx of magnesium ions gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3837 YPO3838 YPO3838 YPO3838 4306748 4307590 - hypothetical protein gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3838 YPO3839 YPO3839 YPO3839 4307604 4308821 - hypothetical protein gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3839 YPO3840 YPO3840 YPO3840 4309249 4309935 + TetR family regulatory protein gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3840 YPO3841 YPO3841 uvrD uvrD 4310049 4312211 - DNA-dependent helicase II unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present%3B involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair. gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3841 YPO3842 YPO3842 YPO3842 4312313 4313029 - flavin mononucleotide phosphatase YigB%3B member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein%3B unknown function gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3842 YPO3843 YPO3843 xerC xerC 4313029 4313940 - site-specific tyrosine recombinase XerC site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3843 YPO3844 YPO3844 YPO3844 4313937 4314641 - hypothetical protein gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3844 YPO3845 YPO3845 dapF dapF 4314706 4315530 - diaminopimelate epimerase involved in lysine biosynthesis%3B DAP epimerase%3B produces DL-diaminopimelate from LL-diaminopimelate gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3845 YPO3846 YPO3846 YPO3846 4315714 4315902 - lipoprotein gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3846 YPO3847 YPO3847 cyaY cyaY 4316054 4316374 + frataxin-like protein defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease%3B based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly gene gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3847 YPO3848 YPO3848 cyaA cyaA 4316618 4319170 - adenylate cyclase catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3848 YPO3848a YPO3848a YPO3848a 4319234 4319443 + hypothetical protein gene gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3848a YPO3849 YPO3849 hemC hemC 4319664 4320605 + porphobilinogen deaminase transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis gene gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3849 YPO3850 YPO3850 hemD hemD 4320602 4321351 + uroporphyrinogen-III synthase catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane%3B functions in tetrapyrrole and heme biosynthesis gene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3850 YPO3851 YPO3851 hemX hemX 4321382 4322506 + uroporphyrinogen III C-methyltransferase gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3851 YPO3852 YPO3852 hemY hemY 4322509 4323729 + protoheme IX biogenesis protein gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3852 YPO3853 YPO3853 tnp tnp 4323922 4324380 - transposase for the IS1541 insertion element gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3853 YPO3854 YPO3854 YPO3854 4325886 4327277 - transport protein YifK uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters%3B unknown function gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3854 YPO3855 YPO3855 wecG wecG 4327801 4328541 - UDP-N-acetyl-D-mannosaminuronic acid transferase gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3855 YPO3856 YPO3856 wecF wecF 4328550 4329914 - common antigen polymerase enterobacterial common antigen polymerase gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3856 YPO3857 YPO3857 YPO3857 4329911 4330996 - 4-alpha-L-fucosyltransferase catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3857 YPO3858 YPO3858 wzx wzx 4331019 4332275 - lipopolysaccharide biosynthesis protein gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3858 YPO3859 YPO3859 rffA rffA 4332277 4333407 - TDP-4-oxo-6-deoxy-D-glucose transaminase catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3859 YPO3860 YPO3860 rffC rffC 4333409 4334077 - TDP-fucosamine acetyltransferase gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3860 YPO3861 YPO3861 rffH rffH 4334124 4335005 - glucose-1-phosphate thymidylyltransferase gene gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3861 YPO3862 YPO3862 rffG rffG 4335300 4336367 - dTDP-D-glucose-4%2C6-dehydratase gene gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3862 YPO3863 YPO3863 wecC wecC 4336364 4337626 - UDP-N-acetyl-D-mannosamine dehydrogenase catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid gene gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3863 YPO3864 YPO3864 nfrC nfrC 4337623 4338753 - UDP-N-acetylglucosamine 2-epimerase gene gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3864 YPO3865 YPO3865 wzzE wzzE 4339034 4340095 - lipopolysaccharide biosynthesis protein WzzE Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3865 YPO3866 YPO3866 rfe rfe 4340131 4341228 - undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3866 YPO3867 YPO3867 rho rho 4341763 4343022 - transcription termination factor Rho An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3867 YPO3868 YPO3868 fipA fipA 4343502 4343828 - thioredoxin gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3868 YPO3869 YPO3869 rhlB rhlB 4343947 4345233 + ATP-dependent RNA helicase RhlB enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome%2C a multi-enzyme complex important in RNA processing and messenger RNA degradation gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3869 YPO3870 YPO3870 gpp gpp 4345237 4346728 + gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3870 YPO3872 YPO3872 rep rep 4346899 4348920 - ATP-dependent DNA helicase Rep single-stranded DNA-dependent ATPase%3B initiates unwinding at a nick in the DNA%3B involved in DNA replication gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3872 YPO3873 YPO3873 ppiC ppiC 4349124 4349405 + peptidyl-prolyl cis-trans isomerase C gene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3873 YPO3874 YPO3874 YPO3874 4349644 4350435 + hypothetical protein gene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3874 YPO3875 YPO3875 y1062 y1062 4350532 4351740 + transposase for the IS285 insertion element gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3875 YPO3876 YPO3876 YPO3876 4352063 4352290 - hypothetical protein no significant database hits. CDS DNA has a low G+C content%2C 24.12%25 gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3876 YPO3877 YPO3877 YPO3877 4352550 4353080 + fimbrial protein gene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3877 YPO3878 YPO3878 YPO3878 4353144 4353875 + fimbrial chaperone gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3878 YPO3879 YPO3879 YPO3879 4353903 4356530 + outer membrane usher protein gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3879 YPO3880 YPO3880 YPO3880 4356547 4357914 + hypothetical protein gene gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3880 YPO3881 YPO3881 YPO3881 4357952 4358698 + chaperone protein gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3881 YPO3883 YPO3883 imm imm 4359333 4359590 - colicin immunity protein gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3883 YPO3885 YPO3885 YPO3885 4360096 4360359 - hypothetical protein no significant database hits gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3885 YPO3887 YPO3887 YPO3887 4360359 4362197 - gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3887 YPO3888 YPO3888 ilvC ilvC 4362378 4363856 - ketol-acid reductoisomerase catalyzes the formation of (R)-2%2C3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3888 YPO3889 YPO3889 ilvY ilvY 4364142 4365023 + DNA-binding transcriptional regulator IlvY participates in controlling several genes involved in isoleucine and valine biosynthesis%3B activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3889 YPO3890 YPO3890 YPO3890 4365078 4365287 - hypothetical protein no significant database hits gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3890 YPO3891 YPO3891 YPO3891 4365899 4366854 + gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3891 YPO3893 YPO3893 YPO3893 4366838 4367299 + hypothetical protein gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3893 YPO3894 YPO3894 YPO3894 4367358 4367840 + hypothetical protein No significant database matches. Similar to YPO3893 (97.6%25 identity in 123 aa overlap)%2C YPO3895 (67.1%25 identity in 161 aa overlap)%2C YPO3935 (66.0%25 identity in 159 aa overlap) and YPO2860 (53.8%25 identity in 160 aa overlap) gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3894 YPO3895 YPO3895 YPO3895 4367899 4368384 + hypothetical protein No significant database matches. Similar to YPO3935 (72.5%25 identity in 160 aa overlap)%2C YPO3894 (67.1%25 identity in 161 aa overlap)%2C YPO2860 (56.6%25 identity in 159 aa overlap) and YPO3893 (58.9%25 identity in 124 aa overlap) gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3895 YPO3896 YPO3896 ilvA ilvA 4368515 4370059 - threonine dehydratase threonine deaminase%3B threonine dehydratase%3B in Escherichia coli%2C IlvA is part of the isoleucine biosynthetic pathway gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3896 YPO3897 YPO3897 ilvD ilvD 4370065 4371915 - dihydroxy-acid dehydratase catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3897 YPO3899 YPO3899 ilvE ilvE 4372226 4373152 - branched-chain amino acid aminotransferase catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3899 YPO3900 YPO3900 ilvM ilvM 4373175 4373432 - acetolactate synthase 2 regulatory subunit gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3900 YPO3901 YPO3901 ilvG ilvG 4373429 4375075 - acetolactate synthase 2 catalytic subunit catalyzes the formation of 2-acetolactate from pyruvate%3B also known as acetolactate synthase large subunit gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3901 YPO3902 YPO3902 YPO3902 4375698 4377221 + magnesium chelatase family protein gene gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3902 YPO3903 YPO3903 YPO3903 4377478 4377816 - hypothetical protein gene gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3903 YPO3904 YPO3904 YPO3904 4377935 4378816 + transcriptional regulator HdfR Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3904 YPO3905 YPO3905 YPO3905 4378803 4379795 - ABC transporter permease membrane component of a sugar ABC transporter system gene gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3905 YPO3906 YPO3906 YPO3906 4379795 4380814 - sugar transport system permease gene gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3906 YPO3907 YPO3907 YPO3907 4380826 4382316 - sugar transport system ATP-binding protein gene gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3907 YPO3908 YPO3908 YPO3908 4382402 4383358 - periplasmic protein gene gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3908 YPO3909 YPO3909 murI murI 4390216 4391079 - glutamate racemase converts L-glutamate to D-glutamate%2C a component of peptidoglycan gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3909 YPO3909a YPO3909a YPO3909a 4389766 4389951 + hypothetical protein gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3909a YPO3910 YPO3910 btuB btuB 4391024 4392919 - vitamin B12/cobalamin outer membrane transporter involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3910 YPO3911 YPO3911 trmA trmA 4393381 4394484 + tRNA (uracil-5-)-methyltransferase catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3911 YPO3912 YPO3912 yijD yijD 4394618 4395025 - hypothetical protein gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3912 YPO3913 YPO3913 YPO3913 4395038 4395685 - DNA-binding transcriptional repressor FabR negatively controls the expression of fabA and fabB%2C genes involved in the unsaturated fatty acid biosynthesis gene gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3913 YPO3914 YPO3914 sthA sthA 4395891 4397291 + soluble pyridine nucleotide transhydrogenase catalyzes the conversion of NADPH to NADH gene gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3914 YPO3915 YPO3915 oxyR oxyR 4397274 4398191 - DNA-binding transcriptional regulator OxyR Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG%2C gor%2C ahpC%2C ahpF%2C oxyS%2C dps%2C fur and grxA gene gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3915 YPO3916 YPO3916 YPO3916 4398338 4399069 + peroxiredoxin/glutaredoxin family protein gene gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3916 YPO3917 YPO3917 YPO3917 4399164 4400627 + dihydrolipoamide dehydrogenase Catalyzes the oxidation of dihydrolipoamide to lipoamide gene gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3917 YPO3918 YPO3918 YPO3918 4400743 4401546 - hypothetical protein gene gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3918 YPO3919 YPO3919 YPO3919 4401611 4402939 - HlyD family secretion protein gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3919 YPO3920 YPO3920 YPO3920 4403015 4404823 - ABC transporter protein gene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3920 YPO3922 YPO3922 YPO3922 4404989 4405606 - hemophore HasA gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3922 YPO3923 YPO3923 YPO3923 4405828 4408320 - TonB dependent receptor protein gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3923 YPO3924 YPO3924 argH argH 4408919 4410292 - argininosuccinate lyase catalyzes the formation of arginine from (N-L-arginino)succinate gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3924 YPO3925 YPO3925 argB argB 4410459 4411232 - acetylglutamate kinase catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3925 YPO3927 YPO3927 argC argC 4411401 4412405 - N-acetyl-gamma-glutamyl-phosphate reductase catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis%3B involved in both the arginine and lysine biosynthetic pathways%3B lysine is produced via the AAA pathway%2C lysine from alpha-aminoadipate gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3927 YPO3928 YPO3928 argE argE 4412650 4413819 + acetylornithine deacetylase catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3928 YPO3929 YPO3929 ppc ppc 4414193 4416829 + phosphoenolpyruvate carboxylase catalyzes the formation of oxaloacetate from phosphoenolpyruvate gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3929 YPO3931 YPO3931 YPO3931 4417442 4418086 + insertion element IS1661 DNA-binding protein gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3931 YPO3932 YPO3932 YPO3932 4418140 4418925 + transposase for insertion sequence IS1661 gene gene3832 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3932 YPO3935 YPO3935 YPO3935 4419714 4420178 - hypothetical protein gene gene3833 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3935 YPO3937 YPO3937 glpD glpD 4421260 4422681 + glycerol-3-phosphate dehydrogenase in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions%3B anaerobic expression is repressed by the arcAB system%3B converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8%3B associates with the cytoplasmic membrane gene gene3834 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3937 YPO3938 YPO3938 glgP glgP 4422844 4425291 - glycogen phosphorylase gene gene3835 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3938 YPO3939 YPO3939 glgA glgA 4425460 4426890 - glycogen synthase catalyzes the formation of alpha-1%2C4-glucan chains from ADP-glucose gene gene3836 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3939 YPO3940 YPO3940 glgC glgC 4426958 4428388 - glucose-1-phosphate adenylyltransferase catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate gene gene3837 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3940 YPO3941 YPO3941 glgX glgX 4428398 4430386 - glycogen debranching protein catalyzes the hydrolysis of the alpha-1%2C6-glucosidic linkages in partially depolymerized glycogen gene gene3838 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3941 YPO3942 YPO3942 glgB glgB 4430388 4432571 - glycogen branching protein catalyzes the transfer of a segment of a 1%2C4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain gene gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3942 YPO3943 YPO3943 YPO3943 4433077 4434774 + hypothetical protein gene gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3943 YPO3944 YPO3944 YPO3944 4434982 4444023 - invasin gene gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3944 YPO3946 YPO3946 YPO3946 4445759 4446046 - hypothetical protein no significant database hits gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3946 YPO3947 YPO3947 YPO3947 4446053 4446427 - hypothetical protein no significant database hits gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3947 YPO3948 YPO3948 YPO3948 4446668 4446949 - hypothetical protein no significant database hits gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3948 YPO3949 YPO3949 asd asd 4447118 4448221 - aspartate-semialdehyde dehydrogenase catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3949 YPO3950 YPO3950 yhgN yhgN 4448588 4449172 + dITP- and XTP- hydrolase YhgN%3B Ec0197%3B hydrolyzes nucleoside triphosphates with an O6 atom-containing purine base to nucleoside monophosphate and pyrophosphate%3B seems to play a role in the elimination of aberrant purine-derived nucleotides containing the 6-keto group%3B shows preference for deoxyinosine triphosphate and xanthosine triphosphate over standard nucleoside triphosphates (dATP%2C dCTP%2C dGTP%2C and dTTP) gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3950 YPO3951 YPO3951 YPO3951 4449412 4449816 - hypothetical protein gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3951 YPO3952 YPO3952 YPO3952 4450187 4450420 - hypothetical protein no significant database hits to the full length CDS. Similar to the N-terminal regions of YPO0639 (59.5%25 identity in 79 aa overlap) and YPO1258 (59.5%25 identity in 79 aa overlap) gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3952 YPO3953 YPO3953 YPO3953 4450602 4451105 - gluconokinase gene gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3953 YPO3954 YPO3954 gntM gntM 4451322 4452638 + gluconate permease gene gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3954 YPO3955 YPO3955 gntR gntR 4452730 4453725 - gluconate utilization system Gnt-I transcriptional repressor gene gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3955 YPO3956 YPO3956 YPO3956 4453854 4454549 - hypothetical protein gene gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3956 YPO3957 YPO3957 YPO3957 4455044 4455313 + hypothetical protein no significant database hits gene gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3957 YPO3958 YPO3958 YPO3958 4455313 4456050 + response regulator protein gene gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3958 YPO3959 YPO3959 YPO3959 4456235 4457242 - PfkB family carbohydrate kinase gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3959 YPO3960 YPO3960 YPO3960 4457252 4458112 - hypothetical protein gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3960 YPO3961 YPO3961 YPO3961 4458138 4458821 - hypothetical protein gene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3961 YPO3962 YPO3962 YPO3962 4458896 4459840 - sugar-binding transport protein gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3962 YPO3963 YPO3963 YPO3963 4459871 4460863 - sugar transport system permease gene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3963 YPO3964 YPO3964 YPO3964 4460856 4462379 - sugar transport ATP-binding protein gene gene3860 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3964 YPO3965 YPO3965 YPO3965 4462568 4465123 + hybrid two-component system regulatory protein gene gene3861 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3965 YPO3966 YPO3966 YPO3966 4465259 4466455 - hypothetical protein gene gene3862 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3966 YPO3967 YPO3967 YPO3967 4466766 4468262 + phosphate transport protein gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3967 YPO3968 YPO3968 tnp tnp 4468528 4468986 + transposase for the IS1541 insertion element gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3968 YPO3969 YPO3969 uspB uspB 4469119 4469454 - universal stress protein UspB ppGpp-dependent%2C membrane associated%2C stress protein produced under conditions of nutrient deprivation%2C osmotic shock and oxidative stress gene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3969 YPO3970 YPO3970 uspA uspA 4470162 4470608 + universal stress protein A gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3970 YPO3971 YPO3971 gdhA gdhA 4470855 4472198 + glutamate dehydrogenase converts 2-oxoglutarate to glutamate%3B in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction%3B uses NADPH%3B forms a homohexamer gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3971 YPO3973 YPO3973 YPO3973 4472443 4473780 + metalloprotease gene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3973 YPO3974 YPO3974 YPO3974 4473845 4474615 - methyltransferase predicted SAM-dependent methyltransferase gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3974 YPO3975 YPO3975 opdA opdA 4474619 4476661 - oligopeptidase A gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3975 YPO3976 YPO3976 YPO3976 4476990 4477832 + hypothetical protein gene gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3976 YPO3977 YPO3977 gor gor 4478018 4479370 + glutathione reductase catalyzes the reduction of 2 glutathione to glutathione disulfide%3B maintains high levels of reduced glutathione in the cytosol%3B involved in redox regulation and oxidative defense gene gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3977 YPO3978 YPO3978 YPO3978 4479562 4480689 + regulatory protein gene gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3978 YPO3979 YPO3979 YPO3979 4480867 4482135 + GntP family permease gene gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3979 YPO3980 YPO3980 glxK glxK 4482146 4483282 + glycerate kinase gene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3980 YPO3981 YPO3981 YPO3981 4483528 4484034 - hypothetical protein No significant database matches. Similar to YPO3982 (60.7%25 identity in 168 aa overlap) gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3981 YPO3982 YPO3982 YPO3982 4484102 4484599 - hypothetical protein gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3982 YPO3983 YPO3983 YPO3983 4484601 4485470 - hypothetical protein gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3983 YPO3984 YPO3984 yapE yapE 4485558 4488770 - autotransporter protein gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3984 YPO3985 YPO3985 YPO3985 4489448 4490530 + hypothetical protein gene gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3985 YPO3986 YPO3986 cdh cdh 4490555 4491331 + CDP-diacylglycerol pyrophosphatase gene gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3986 YPO3987 YPO3987 YPO3987 4491308 4493530 - hypothetical protein gene gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3987 YPO3988 YPO3988 YPO3988 4493835 4494665 - diguanylate phosphodiesterase in Escherichia coli this protein is involved in flagellar function gene gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3988 YPO3989 YPO3989 YPO3989 4494899 4495099 + tautomerase gene gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3989 YPO3990 YPO3990 kdgK kdgK 4495378 4496322 + 2-dehydro-3-deoxygluconokinase gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3990 YPO3991 YPO3991 YPO3991 4496486 4497985 - insulinase family protease gene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3991 YPO3992 YPO3992 dctA dctA 4498350 4499639 - C4-dicarboxylate transporter DctA involved in the transport of C4-dicarboxylates across the membrane gene gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3992 YPO3993 YPO3993 YPO3993 4500094 4500573 - hypothetical protein gene gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3993 YPO3994 YPO3994 pelY pelY 4500698 4502416 - periplasmic pectate lyase gene gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3994 YPO3995 YPO3995 YPO3995 4502662 4503366 - hypothetical protein gene gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3995 YPO3996 YPO3996 yhjK yhjK 4504006 4506192 - biofilm formation regulator HmsP HmsP in Yersinia pestis plays a role in invasion of epithelial cells%3B the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation%3B inner membrane protein gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3996 YPO3998 YPO3998 YPO3998 4506338 4507449 - gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3998 YPO3999 YPO3999 dppF dppF 4507553 4508629 - dipeptide transporter ATP-binding protein Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3999 YPO4000 YPO4000 dppD dppD 4508626 4509606 - dipeptide transporter ATP-binding protein DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4000 YPO4001 YPO4001 dppC dppC 4509620 4510522 - dipeptide transporter gene gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4001 YPO4002 YPO4002 dppB dppB 4510604 4511551 - dipeptide transporter permease DppB transports peptides consisting of two or three amino acids gene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4002 YPO4003 YPO4003 dppA dppA 4511834 4513441 - periplasmic dipeptide transport protein gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4003 YPO4004 YPO4004 YPO4004 4513844 4514092 - hypothetical protein doubtful CDS with no significant database hits gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4004 YPO4005 YPO4005 YPO4005 4514110 4515873 - hemolysin activator protein gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4005 YPO4006 YPO4006 YPO4006 4515982 4517373 - hypothetical protein gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4006 YPO4007 YPO4007 uhpC uhpC 4517879 4519210 - regulatory protein UhpC membrane protein regulates uhpT expression gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4007 YPO4009 YPO4009 YPO4009 4520110 4520892 - transposase/IS protein ypmt1.57c gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4009 YPO4010 YPO4010 y1093 y1093 4520889 4521911 - transposase for insertion sequence IS100 gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4010 YPO4012 YPO4012 uhpA uhpA 4522790 4523380 - two-component system response regulator gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4012 YPO4013 YPO4013 yhjW yhjW 4523496 4525187 - phosphoethanolamine transferase catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4013 YPO4014 YPO4014 YPO4014 4525716 4527179 - hypothetical protein gene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4014 YPO4015 YPO4015 YPO4015 4527647 4529050 - amino acid permease gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4015 YPO4016 YPO4016 hutH hutH 4529468 4531000 - histidine ammonia-lyase catalyzes the degradation of histidine to urocanate and ammmonia gene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4016 YPO4017 YPO4017 hutU hutU 4530997 4532688 - urocanate hydratase catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4017 YPO4018 YPO4018 cysM cysM 4533415 4534359 + pyridoxal-phosphate dependent protein gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4018 YPO4019 YPO4019 YPO4019 4534356 4534922 + adenine phosphoribosyltransferase catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4019 YPO4020 YPO4020 YPO4020 4535005 4535934 + hypothetical protein gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4020 YPO4021 YPO4021 YPO4021 4535936 4537180 + hypothetical protein gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4021 YPO4022 YPO4022 YPO4022 4537703 4538656 + iron transport protein gene gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4022 YPO4023 YPO4023 YPO4023 4538666 4539625 + iron transport permease gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4023 YPO4024 YPO4024 YPO4024 4539615 4540622 + iron transport permease gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4024 YPO4025 YPO4025 YPO4025 4540619 4541377 + iron ABC transporter ATP-binding protein gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4025 YPO4028 YPO4028 YPO4028 4543227 4543589 + regulator gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4028 YPO4029 YPO4029 YPO4029 4543628 4544560 + gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4029 YPO4031 YPO4031 YPO4031 4544734 4544979 + regulatory protein gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4031 YPO4032 YPO4032 YPO4032 4545247 4546554 - hypothetical protein no significant database hits. CDS DNA has a low G+C content%2C 31.03%25 gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4032 YPO4033 YPO4033 YPO4033 4546613 4547806 - phage integrase gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4033 YPO4034 YPO4034 YPO4034 4548192 4549385 - AraC family transcriptional regulator gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4034 YPO4035 YPO4035 YPO4035 4549475 4550659 - sugar transport system permease gene gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4035 YPO4036 YPO4036 YPO4036 4550646 4552178 - xylose transporter ATP-binding protein with XylFH is part of the high affinity xylose ABC transporter gene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4036 YPO4037 YPO4037 xylF xylF 4552386 4553381 - D-xylose transporter subunit XylF periplasmic substrate-binding component of the ATP-dependent xylose transport system%3B high affinity gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4037 YPO4038 YPO4038 xylA xylA 4553844 4555163 + xylose isomerase catalyzes the interconversion of D-xylose to D-xylulose gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4038 YPO4039 YPO4039 xylB xylB 4555287 4556741 + xylulose kinase gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4039 YPO4040 YPO4040 YPO4040 4556859 4557845 - hypothetical protein gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4040 YPO4041 YPO4041 YPO4041 4557884 4558651 - fimbrial chaperone gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4041 YPO4042 YPO4042 YPO4042 4558744 4561234 - gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4042 YPO4044 YPO4044 YPO4044 4561310 4561867 - fimbrial protein gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4044 YPO4045 YPO4045 YPO4045 4562749 4563741 - hypothetical protein gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4045 YPO4046 YPO4046 YPO4046 4563975 4564619 + insertion element IS1661 DNA-binding protein gene gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4046 YPO4047 YPO4047 YPO4047 4564673 4565458 + transposase for insertion sequence IS1661 gene gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4047 YPO4048 YPO4048 cmr cmr 4565931 4567160 + multidrug translocase gene gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4048 YPO4049 YPO4049 YPO4049 4567870 4568451 + hypothetical protein gene gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4049 YPO4050 YPO4050 YPO4050 4568465 4568797 - hypothetical protein gene gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4050 YPO4052 YPO4052 fdhA fdhA 4569557 4571510 - gene gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4052 YPO4054 YPO4054 selA selA 4571507 4572895 - selenocysteine synthase catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis gene gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4054 YPO4055 YPO4055 fdhE fdhE 4573079 4574008 - formate dehydrogenase accessory protein FdhE required for the formation of active formate dehydrogenase gene gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4055 YPO4056 YPO4056 fdoI fdoI 4574008 4574682 - formate dehydrogenase-O subunit gamma cytochrome b556(FDO) component%3B heme containing gene gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4056 YPO4057 YPO4057 fdoH fdoH 4574679 4575650 - formate dehydrogenase-O iron-sulfur subunit gene gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4057 YPO4058 YPO4058 fdoG fdoG 4575666 4578710 - gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4058 YPO4060 YPO4060 fdhD fdhD 4578907 4579731 + formate dehydrogenase accessory protein involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4060 YPO4061 YPO4061 sodA sodA 4580167 4580790 + superoxide dismutase SodA%3B manganese binding%3B only present under aerobic conditions%3B destroys free radicals gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4061 YPO4062 YPO4062 cheM cheM 4581134 4583083 + methyl-accepting chemotaxis protein II gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4062 YPO4063 YPO4063 YPO4063 4583273 4583605 + hypothetical protein gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4063 YPO4064 YPO4064 YPO4064 4584161 4584613 + hypothetical protein gene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4064 YPO4065 YPO4065 YPO4065 4584782 4585138 - hypothetical protein gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4065 YPO4066 YPO4066 mtlR mtlR 4585387 4585941 - mannitol repressor protein Acts as a repressor of the mtlAD operon gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4066 YPO4067 YPO4067 mtlD mtlD 4586148 4587311 - mannitol-1-phosphate 5-dehydrogenase gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4067 YPO4068 YPO4068 mtlA mtlA 4587448 4589379 - PTS system mannitol-specific transporter subunit IIABC gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4068 YPO4070 YPO4070 yiaF yiaF 4590029 4590754 - hypothetical protein gene gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4070 YPO4071 YPO4071 glyS glyS 4591221 4593290 - glycyl-tRNA synthetase subunit beta glycine--tRNA ligase beta chain%3B glyS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4071 YPO4072 YPO4072 glyQ glyQ 4593300 4594214 - glycyl-tRNA synthetase subunit alpha glycine--tRNA ligase alpha chain%3B GlyRS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4072 YPO4074 YPO4074 tag tag 4594542 4595114 + DNA-3-methyladenine glycosylase gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4074 YPO4075 YPO4075 YPO4075 4595111 4595566 + hypothetical protein gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4075 YPO4076 YPO4076 yiaD yiaD 4595924 4596583 + outer membrane lipoprotein gene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4076 YPO4077 YPO4077 YPO4077 4596714 4597358 - hypothetical protein gene gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4077 YPO4078 YPO4078 YPO4078 4597877 4598857 + D-isomer specific 2-hydroxyacid dehydrogenase gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4078 YPO4080 YPO4080 malS malS 4599146 4601209 + periplasmic alpha-amylase periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB%3B hydrolyzes alpha-(1%2C4) glycosidic linkages%3B contains internal disulfide bonds gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4080 YPO4081 YPO4081 YPO4081 4601624 4602067 + hypothetical protein Poor database matches gene gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4081 YPO4082 YPO4082 avtA avtA 4602522 4603787 + valine--pyruvate transaminase transaminase C%3B catalyzes transamination of alanine%2C valine%2C and 2-aminobutyrate with their respective 2-keto acids%3B also catalyzes terminal step in valine biosynthesis gene gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4082 YPO4083 YPO4083 yidE yidE 4603900 4605558 - hypothetical protein gene gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4083 YPO4084 YPO4084 ibpB ibpB 4605931 4606395 - heat shock chaperone IbpB 16 kDa heat shock protein B%3B associates with aggregated proteins%2C together with ibpA%2C to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress%3B ATP-independent gene gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4084 YPO4085 YPO4085 ibpA ibpA 4606676 4607089 - heat shock protein IbpA with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4085 YPO4086 YPO4086 YPO4086 4607457 4607795 + hypothetical protein gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4086 YPO4087 YPO4087 YPO4087 4607835 4608450 - gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4087 YPO4089 YPO4089 YPO4089 4608658 4609620 + hypothetical protein gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4089 YPO4090 YPO4090 YPO4090 4609614 4610567 + ornithine cyclodeaminase catalyzes the formation of L-proline from L-ornithine gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4090 YPO4091 YPO4091 YPO4091 4610624 4611289 + insertion element IS1661 DNA-binding protein gene gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4091 YPO4092 YPO4092 YPO4092 4611343 4612128 + transposase for insertion sequence IS1661 gene gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4092 YPO4093 YPO4093 YPO4093 4612519 4613328 - sugar phosphatase YidA%3B catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate)%2C mannose 1-phosphate and p-nitrophenyl phosphate%3B hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form%3B member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins gene gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4093 YPO4094 YPO4094 gyrB gyrB 4613544 4615958 - DNA gyrase subunit B negatively supercoils closed circular double-stranded DNA gene gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4094 YPO4095 YPO4095 recF recF 4615978 4617063 - recombination protein F Required for DNA replication%3B binds preferentially to single-stranded%2C linear DNA gene gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4095 YPO4096 YPO4096 dnaN dnaN 4617236 4618336 - DNA polymerase III subunit beta binds the polymerase to DNA and acts as a sliding clamp gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4096 YPO4097 YPO4097 dnaA dnaA 4618341 4619729 - chromosome replication initiator DnaA binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself. gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4097 YPO4098 YPO4098 YPO4098 4619853 4620062 + hypothetical protein no significant database hits gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4098 YPO4100 YPO4100 rpmH rpmH 4620439 4620579 + 50S ribosomal protein L34 in Escherichia coli transcription of this gene is enhanced by polyamines gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4100 YPO4101 YPO4101 rnpA rnpA 4620598 4620957 + ribonuclease P protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus%3B this enzyme also cleaves other RNA substrates gene gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4101 YPO4102 YPO4102 yidC yidC 4621181 4622821 + inner membrane protein translocase component YidC functions to insert inner membrane proteins into the IM in Escherichia coli%3B interacts with transmembrane segments%3B functions in both Sec-dependent and -independent membrane insertion%3B similar to Oxa1p in mitochondria gene gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4102 YPO4103 YPO4103 trmE trmE 4622964 4624328 + tRNA modification GTPase TrmE in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine%2C which is found in the wobble position of some tRNAs and affects ribosomal frameshifting%3B shows potassium-dependent dimerization and GTP hydrolysis%3B also involved in regulation of glutamate-dependent acid resistance and activation of gadE gene gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4103 YPO4104 YPO4104 YPO4104 4624514 4625713 + trans-2-enoyl-CoA reductase enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity gene gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4104 YPO4105 YPO4105 YPO4105 4626181 4627144 - gene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4105 YPO4107 YPO4107 yieG yieG 4627689 4629017 - xanthine/uracil permeases family protein gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4107 YPO4108 YPO4108 YPO4108 4629510 4630178 + 6-phosphogluconate phosphatase YieH%3B catalyzes the dephosphorylation of phosphoenolpyruvate%2C AMP and p-nitrophenyl phosphate%3B purine and pyrimidine nucleotides are secondary substrates%3B member of the haloacid dehalogenase-like hydrolases superfamily gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4108 YPO4109 YPO4109 YPO4109 4630213 4630968 - amino acid transport system permease gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4109 YPO4110 YPO4110 YPO4110 4630970 4631707 - ABC transporter permease gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4110 YPO4111 YPO4111 YPO4111 4631890 4632744 - substrate-binding protein gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4111 YPO4112 YPO4112 YPO4112 4632964 4633635 - hypothetical protein gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4112 YPO4113 YPO4113 phoU phoU 4633931 4634653 - transcriptional regulator PhoU regulates several genes involved in high affinity phosphate uptake%3B under conditions of high phosphate concentrations downregulates the PHO regulon gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4113 YPO4114 YPO4114 pstB pstB 4634741 4635517 - phosphate transporter ATP-binding protein ATP-binding protein%3B PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4114 YPO4115 YPO4115 pstA pstA 4635598 4636485 - phosphate transporter permease PtsA Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4115 YPO4116 YPO4116 pstC pstC 4636487 4637458 - phosphate transporter permease PstC part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4116 YPO4117 YPO4117 pstS pstS 4637672 4638712 - phosphate ABC transporter substrate-binding protein PstS gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4117 YPO4118 YPO4118 glmS glmS 4639195 4641024 - glucosamine--fructose-6-phosphate aminotransferase Catalyzes the first step in hexosamine metabolism%2C converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source gene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4118 YPO4119 YPO4119 glmU glmU 4641225 4642595 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase forms a homotrimer%3B catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc%3B function in cell wall synthesis gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4119 YPO4120 YPO4120 atpC atpC 4643216 4643638 - ATP synthase F0F1 subunit epsilon part of catalytic core of ATP synthase%3B alpha(3)beta(3)gamma(1)delta(1)epsilon(1)%3B involved in producing ATP from ADP in the presence of the proton motive force across the membrane gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4120 YPO4121 YPO4121 atpD atpD 4643660 4645042 - ATP synthase F0F1 subunit beta Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4121 YPO4122 YPO4122 atpG atpG 4645198 4646061 - ATP synthase F0F1 subunit gamma Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4122 YPO4123 YPO4123 atpA atpA 4646123 4647664 - ATP synthase F0F1 subunit alpha produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4123 YPO4124 YPO4124 atpH atpH 4647679 4648212 - ATP synthase F0F1 subunit delta Produces ATP from ADP in the presence of a proton gradient across the membrane%3B the delta subunit is part of the catalytic core of the ATP synthase complex gene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4124 YPO4125 YPO4125 atpF atpF 4648227 4648697 - ATP synthase F0F1 subunit B Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4125 YPO4126 YPO4126 atpE atpE 4648759 4648998 - ATP synthase F0F1 subunit C Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 gene gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4126 YPO4127 YPO4127 atpB atpB 4649048 4649872 - ATP synthase F0F1 subunit A Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 gene gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4127 YPO4128 YPO4128 atpI atpI 4649912 4650295 - F0F1 ATP synthase subunit I Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation gene gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4128 YPO4129 YPO4129 gidB gidB 4650962 4651582 - 16S rRNA methyltransferase GidB glucose-inhibited division protein B%3B SAM-dependent methyltransferase%3B methylates the N7 position of guanosine in position 527 of 16S rRNA gene gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4129 YPO4130 YPO4130 gidA gidA 4651728 4653617 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA GidA%3B glucose-inhibited cell division protein A%3B involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs gene gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4130 YPO828a YPO828a YPO828a 908096 908530 + transposase gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=YPO828a YPOr01 YPOr01 YPOr01 12292 13763 + 16S ribosomal RNA match to 16S_rRNA 1..1472 (EMBL:YPE16SA) rRNA gene11 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr01 YPOr02 YPOr02 YPOr02 14272 17178 + 23S ribosomal RNA match to 23S_rRNA 1..2906 ~96 %25 ID U77925 (Y. enterocolitica 23S) rRNA gene13 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr02 YPOr03 YPOr03 YPOr03 17288 17403 + 5S ribosomal RNA match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer) rRNA gene14 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr03 YPOr04 YPOr04 YPOr04 1217505 1218993 + 16S ribosomal RNA match to 16S_rRNA 1..1489 (EMBL:YPE16SA) rRNA gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr04 YPOr05 YPOr05 YPOr05 1219485 1222391 + 23S ribosomal RNA match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925) rRNA gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr05 YPOr06 YPOr06 YPOr06 1222501 1222616 + 5S ribosomal RNA match to 5SrRNA 1..234 blast score 1131 percent identity 98 (incl. 23S-5S spacer) rRNA gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr06 YPOr07 YPOr07 YPOr07 3648977 3649092 - 5S ribosomal RNA match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer) rRNA gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr07 YPOr08 YPOr08 YPOr08 3649202 3652108 - 23S ribosomal RNA match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925 ) rRNA gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr08 YPOr09 YPOr09 YPOr09 3652660 3654148 - 16S ribosomal RNA match to 16S_rRNA 1..14789 (EMBL:YPE16SA) rRNA gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr09 YPOr10 YPOr10 YPOr10 4175006 4175140 - 5S ribosomal RNA partial 5SrRNA lacking the first 100 bases. rRNA gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr10 YPOr11 YPOr11 YPOr11 4175261 4175376 - 5S ribosomal RNA match to 5SrRNA 1..233 blast score 1144 percent identity 99 (incl. 23S-5S spacer) rRNA gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr11 YPOr12 YPOr12 YPOr12 4175486 4178392 - 23S ribosomal RNA match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925) rRNA gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr12 YPOr13 YPOr13 YPOr13 4178944 4180432 - 16S ribosomal RNA match to 16S_rRNA 1..1489 (EMBL:YPE16SA) rRNA gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr13 YPOr14 YPOr14 YPOr14 4218125 4218240 - 5S ribosomal RNA match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer) rRNA gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr14 YPOr15 YPOr15 YPOr15 4218350 4221256 - 23S ribosomal RNA match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925) rRNA gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr15 YPOr16 YPOr16 YPOr16 4221808 4223296 - 16S ribosomal RNA match to 16S_rRNA 1..1489(EMBL:YPE16SA) rRNA gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr16 YPOr17 YPOr17 YPOr17 4384622 4384737 - 5S ribosomal RNA match to 5SrRNA 1..234 blast score 1140 percent identity 98 (incl. 23S-5S spacer) rRNA gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr17 YPOr18 YPOr18 YPOr18 4384847 4387753 - 23S ribosomal RNA match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925 ) rRNA gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr18 YPOr19 YPOr19 YPOr19 4388245 4389733 - 16S ribosomal RNA match to 16S_rRNA 1..1489 (EMBL:YPE16SA) rRNA gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=YPOr19 YPOs01 YPOs01 spf spf 25879 25982 + hypothetical protein RNA feature: spf Spot 42 RNA. Due to transposon insertion this feature is a single base shorter than the E. coli spf gene. ncRNA gene22 http://www.ncbi.nlm.nih.gov/gene/?term=YPOs01 YPOs02 YPOs02 ssrS ssrS 1001993 1002174 + 6S RNA Similar to Escherichia coli 6S RNA%2C ssrS%2C 86%25 identity in 159 overlap ncRNA gene870 http://www.ncbi.nlm.nih.gov/gene/?term=YPOs02 YPOs03 YPOs03 csrB csrB 1177074 1177355 + CsrB Similar to Escherichia coli regulatory RNA csrB%2C 62%25 identity in 283 nt overlap ncRNA gene989 http://www.ncbi.nlm.nih.gov/gene/?term=YPOs03 YPOs04 YPOs04 ssrA ssrA 1245588 1245951 + Similar to Escherichia coli small stable RNA molecule%2C tmRNA [10Sa RNA] (D12501)%2C 91%25 identity in 333 nt overlap tmRNA gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=YPOs04 YPOs05 YPOs05 micF micF 1381758 1381842 - micF Similar to regulatory antisense RNA affecting ompF expression%2C micF%2C 64%25 identity in a 95 nt overlap ncRNA gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=YPOs05 YPOs06 YPOs06 ffs ffs 3498454 3498573 - 4.5S RNA Similar to Escherichia coli 4.5S RNA%2C ffs%2C 85%25 identity in 103 nt overlap ncRNA gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=YPOs06 YPOs07 YPOs07 rnpB rnpB 3955749 3956125 - RNase P RNA component Similar to Escherichia coli RNase P%2C RNA component involved in tRNA and 4.5S RNA-processing%2C rnpB%2C 92%25 identity in 347 nt overlap ncRNA gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=YPOs07 YPPCP1.01 YPPCP1.01 YPPCP1.01 87 1109 + putative transposase probable IS100 transposase%3B similar to TR:P74993%3B similar to TRA6_BACST putative transposase for insertion sequence element IS5376%3B contains helix-turn-helix motif from aa 19-40 gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term=YPPCP1.01 YPPCP1.02 YPPCP1.02 YPPCP1.02 1106 1888 + transposase/IS protein IS100 ATP-binding protein%3B similar to TR:P74994%3B similar to ISTB_ECOLI insertion sequence IS21 putative ATP-binding protein%3B contains PS00017 ATP/GTP-binding site motif A%3B P-loop gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term=YPPCP1.02 YPPCP1.03 YPPCP1.03 rop rop 2925 3119 + putative replication regulatory protein plasmid replication regulatory protein%3B similar to ROP_ECOLI regulatory protein ROP from ColE1%3B RNA one modulator gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term=YPPCP1.03 YPPCP1.04 YPPCP1.04 pim pim 4355 4780 + pesticin immunity protein pesticin immunity protein%3B similar to TR:Q57285 (EMBL:Z54145%3B X92856) gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term=YPPCP1.04 YPPCP1.05c YPPCP1.05c pst pst 4815 5888 - pesticin similar to TR:Q57159 (EMBL:X92856) gene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term=YPPCP1.05c YPPCP1.06 YPPCP1.06 YPPCP1.06 6006 6422 + hypothetical protein gene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term=YPPCP1.06 YPPCP1.07 YPPCP1.07 pla pla 6665 7603 + outer membrane protease outer membrane protease%3B involved in virulence in many organisms%3B OmpT%3B IcsP%3B SopA%3B Pla%3B PgtE%3B omptin%3B in Escherichia coli OmpT can degrade antimicrobial peptides%3B in Yersinia Pla activates plasminogen during infection%3B in Shigella flexneria SopA cleaves the autotransporter IcsA gene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term=YPPCP1.07 YPPCP1.08c YPPCP1.08c YPPCP1.08c 7790 8089 - putative transcriptional regulator similar to predicted transcriptional regulator TR:P95258 (EMBL:Z84498) Mycobacterium tuberculosis MTCY09F9.0 8C (Rv1956)%3B contains helix-turn-helix motif from aa 42-63 gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term=YPPCP1.08c YPPCP1.09c YPPCP1.09c YPPCP1.09c 8089 8436 - hypothetical protein similar to two hypothetical proteins from Mycobacterium tuberculosis TR:O53468 (EMBL:O53468) MTV018.09C (Rv2022c)%3B similar to TR:O53332 (EMBL:AL021646) MTV014.26 (Rv3182)%3B label: YPPCP1.09c gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term=YPPCP1.09c YPt_01 YPt_01 YPt_01 13944 14019 + tRNA-Glu tRNA Glu anticodon TTC%2C Cove score 56.95 tRNA gene12 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_01 YPt_02 YPt_02 YPt_02 348756 348831 - tRNA-Phe tRNA Phe anticodon GAA%2C Cove score 84.11 tRNA gene328 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_02 YPt_03 YPt_03 YPt_03 379434 379509 + tRNA-Gly tRNA Gly anticodon GCC%2C Cove score 93.74 tRNA gene354 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_03 YPt_04 YPt_04 YPt_04 447362 447448 - tRNA-Leu tRNA Leu anticodon CAG%2C Cove score 64.60 tRNA gene410 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_04 YPt_05 YPt_05 YPt_05 698940 699016 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 93.29 tRNA gene616 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_05 YPt_06 YPt_06 YPt_06 971477 971550 - tRNA-Gly tRNA Gly anticodon CCC%2C Cove score 78.87 tRNA gene844 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_06 YPt_07 YPt_07 YPt_07 1063926 1064001 + tRNA-Phe tRNA Phe anticodon GAA%2C Cove score 84.11 tRNA gene918 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_07 YPt_08 YPt_08 YPt_08 1164810 1164886 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 86.07 tRNA gene976 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_08 YPt_09 YPt_09 YPt_09 1165010 1165086 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 86.07 tRNA gene977 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_09 YPt_10 YPt_10 YPt_10 1219157 1219232 + tRNA-Glu tRNA Glu anticodon TTC%2C Cove score 56.95 tRNA gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_10 YPt_11 YPt_11 YPt_11 1222742 1222818 + tRNA-Asp tRNA Asp anticodon GTC%2C Cove score 90.47 tRNA gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_11 YPt_12 YPt_12 YPt_12 1230109 1230185 + tRNA-Asp tRNA Asp anticodon GTC%2C Cove score 94.51 tRNA gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_12 YPt_13 YPt_13 YPt_13 1273048 1273123 + tRNA-Lys tRNA Lys anticodon TTT%2C Cove score 95.27 tRNA gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_13 YPt_14 YPt_14 YPt_14 1273151 1273226 + tRNA-Lys tRNA Lys anticodon TTT%2C Cove score 95.27 tRNA gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_14 YPt_15 YPt_15 YPt_15 1273255 1273324 + tRNA-OTHER tRNA Pseudo anticodon TTT%2C Cove score 40.49~tRNA Pseudo anticodon TTT%2C Cove score 40.49 tRNA gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_15 YPt_16 YPt_16 YPt_16 1384371 1384458 + tRNA-Ser tRNA Ser anticodon TGA%2C Cove score 68.39 tRNA gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_16 YPt_17 YPt_17 YPt_17 1384464 1384539 + tRNA-Thr tRNA Thr anticodon TGT%2C Cove score 93.97 tRNA gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_17 YPt_18 YPt_18 YPt_18 1416574 1416650 - tRNA-Pro tRNA Pro anticodon GGG%2C Cove score 79.79 tRNA gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_18 YPt_19 YPt_19 YPt_19 1639663 1639750 + tRNA-Ser tRNA Ser anticodon TGA%2C Cove score 74.25 tRNA gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_19 YPt_20 YPt_20 YPt_20 1797571 1797646 - tRNA-Asn tRNA Asn anticodon GTT%2C Cove score 87.13 tRNA gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_20 YPt_21 YPt_21 YPt_21 1976985 1977060 - tRNA-Asn tRNA Asn anticodon GTT%2C Cove score 87.13 tRNA gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_21 YPt_22 YPt_22 YPt_22 2108507 2108582 + tRNA-Lys tRNA Lys anticodon CTT%2C Cove score 96.54 tRNA gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_22 YPt_23 YPt_23 YPt_23 2115031 2115106 + tRNA-Gly tRNA Gly anticodon GCC%2C Cove score 93.74 tRNA gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_23 YPt_24 YPt_24 YPt_24 2115159 2115232 + tRNA-Cys tRNA Cys anticodon GCA%2C Cove score 58.23 tRNA gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_24 YPt_25 YPt_25 YPt_25 2115243 2115328 + tRNA-Leu tRNA Leu anticodon TAA%2C Cove score 73.10 tRNA gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_25 YPt_26 YPt_26 YPt_26 2171287 2171362 - tRNA-Asn tRNA Asn anticodon GTT%2C Cove score 87.13 tRNA gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_26 YPt_27 YPt_27 YPt_27 2298924 2299013 - tRNA-Ser tRNA Ser anticodon GGA%2C Cove score 59.10 tRNA gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_27 YPt_28 YPt_28 YPt_28 2307334 2307423 - tRNA-Ser tRNA Ser anticodon GGA%2C Cove score 62.70 tRNA gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_28 YPt_29 YPt_29 YPt_29 2440767 2440851 - tRNA-Tyr tRNA Tyr anticodon GTA%2C Cove score 66.93 tRNA gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_29 YPt_30 YPt_30 YPt_30 2688776 2688852 + tRNA-Val tRNA Val anticodon GAC%2C Cove score 96.37 tRNA gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_30 YPt_31 YPt_31 YPt_31 2688912 2688988 + tRNA-Val tRNA Val anticodon GAC%2C Cove score 83.12 tRNA gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_31 YPt_32 YPt_32 YPt_32 2946029 2946103 - tRNA-Gln tRNA Gln anticodon CTG%2C Cove score 74.52 tRNA gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_32 YPt_33 YPt_33 YPt_33 2946109 2946185 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 94.35 tRNA gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_33 YPt_34 YPt_34 YPt_34 2946218 2946292 - tRNA-Gln tRNA Gln anticodon TTG%2C Cove score 75.01 tRNA gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_34 YPt_35 YPt_35 YPt_35 2946322 2946406 - tRNA-Leu tRNA Leu anticodon TAG%2C Cove score 76.99 tRNA gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_35 YPt_36 YPt_36 YPt_36 2946414 2946490 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 94.35 tRNA gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_36 YPt_37 YPt_37 YPt_37 3065197 3065271 + tRNA-Arg tRNA Arg anticodon CCT%2C Cove score 71.72 tRNA gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_37 YPt_38 YPt_38 YPt_38 3151676 3151752 - tRNA-Arg tRNA Arg anticodon TCT%2C Cove score 94.70 tRNA gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_38 YPt_39 YPt_39 YPt_39 3332619 3332694 - tRNA-Lys tRNA Lys anticodon TTT%2C Cove score 95.27 tRNA gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_39 YPt_40 YPt_40 YPt_40 3332894 3332969 - tRNA-Val tRNA Val anticodon TAC%2C Cove score 90.85 tRNA gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_40 YPt_41 YPt_41 YPt_41 3333014 3333089 - tRNA-Val tRNA Val anticodon TAC%2C Cove score 90.85 tRNA gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_41 YPt_42 YPt_42 YPt_42 3333126 3333201 - tRNA-Val tRNA Val anticodon TAC%2C Cove score 90.85 tRNA gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_42 YPt_43 YPt_43 YPt_43 3335833 3335908 + tRNA-Ala tRNA Ala anticodon GGC%2C Cove score 86.95 tRNA gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_43 YPt_44 YPt_44 YPt_44 3335986 3336061 + tRNA-Ala tRNA Ala anticodon GGC%2C Cove score 86.95 tRNA gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_44 YPt_45 YPt_45 YPt_45 3652327 3652402 - tRNA-Ala tRNA Ala anticodon TGC%2C Cove score 93.97 tRNA gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_45 YPt_46 YPt_46 YPt_46 3652454 3652530 - tRNA-Ile tRNA Ile anticodon GAT%2C Cove score 94.77 tRNA gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_46 YPt_47 YPt_47 YPt_47 3682605 3682681 - tRNA-Arg tRNA Arg anticodon ACG%2C Cove score 80.38 tRNA gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_47 YPt_48 YPt_48 YPt_48 3682739 3682815 - tRNA-Arg tRNA Arg anticodon ACG%2C Cove score 85.08 tRNA gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_48 YPt_49 YPt_49 YPt_49 3682824 3682916 - tRNA-Ser tRNA Ser anticodon GCT%2C Cove score 73.90 tRNA gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_49 YPt_50 YPt_50 YPt_50 3843474 3843558 - tRNA-Leu tRNA Leu anticodon CAA%2C Cove score 74.86 tRNA gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_50 YPt_51 YPt_51 YPt_51 3909002 3909078 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 86.07 tRNA gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_51 YPt_52 YPt_52 YPt_52 3909139 3909225 - tRNA-Leu tRNA Leu anticodon GAG%2C Cove score 68.10 tRNA gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_52 YPt_53 YPt_53 YPt_53 4175170 4175245 - tRNA-Thr tRNA Thr anticodon GGT%2C Cove score 88.70 tRNA gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_53 YPt_54 YPt_54 YPt_54 4178611 4178686 - tRNA-Ala tRNA Ala anticodon TGC%2C Cove score 93.97 tRNA gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_54 YPt_55 YPt_55 YPt_55 4178738 4178814 - tRNA-Ile tRNA Ile anticodon GAT%2C Cove score 94.77 tRNA gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_55 YPt_56 YPt_56 YPt_56 4211082 4211157 - tRNA-Thr tRNA Thr anticodon GGT%2C Cove score 94.75 tRNA gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_56 YPt_57 YPt_57 YPt_57 4211164 4211238 - tRNA-Gly tRNA Gly anticodon TCC%2C Cove score 63.22 tRNA gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_57 YPt_58 YPt_58 YPt_58 4211388 4211472 - tRNA-Tyr tRNA Tyr anticodon GTA%2C Cove score 66.93 tRNA gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_58 YPt_59 YPt_59 YPt_59 4211491 4211566 - tRNA-Thr tRNA Thr anticodon TGT%2C Cove score 93.97 tRNA gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_59 YPt_60 YPt_60 YPt_60 4221475 4221550 - tRNA-Ala tRNA Ala anticodon TGC%2C Cove score 93.97 tRNA gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_60 YPt_61 YPt_61 YPt_61 4221602 4221678 - tRNA-Ile tRNA Ile anticodon GAT%2C Cove score 94.77 tRNA gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_61 YPt_62 YPt_62 YPt_62 4325247 4325323 - tRNA-Pro tRNA Pro anticodon TGG%2C Cove score 92.73 tRNA gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_62 YPt_63 YPt_63 YPt_63 4325399 4325485 - tRNA-Leu tRNA Leu anticodon CAG%2C Cove score 67.09 tRNA gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_63 YPt_64 YPt_64 YPt_64 4325502 4325577 - tRNA-His tRNA His anticodon GTG%2C Cove score 84.86 tRNA gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_64 YPt_65 YPt_65 YPt_65 4325661 4325737 - tRNA-Arg tRNA Arg anticodon CCG%2C Cove score 91.00 tRNA gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_65 YPt_66 YPt_66 YPt_66 4384336 4384411 - tRNA-Trp tRNA Trp anticodon CCA%2C Cove score 82.06 tRNA gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_66 YPt_67 YPt_67 YPt_67 4384420 4384496 - tRNA-Asp tRNA Asp anticodon GTC%2C Cove score 90.47 tRNA gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_67 YPt_68 YPt_68 YPt_68 4388006 4388081 - tRNA-Glu tRNA Glu anticodon TTC%2C Cove score 56.95 tRNA gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_68 YPt_69 YPt_69 YPt_69 4517686 4517762 - tRNA-Pro tRNA Pro anticodon TGG%2C Cove score 92.73 tRNA gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_69 YPt_70 YPt_70 YPt_70 4547972 4548062 - tRNA-Sec tRNA SeC(p) anticodon TCA%2C Cove score 71.03 tRNA gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=YPt_70