locus-tag class description YPD4_RS00005 PF00258 Flavodoxin YPD4_RS00010 PF01037 Lrp/AsnC ligand binding domain YPD4_RS00015 PF03590 Aspartate-ammonia ligase YPD4_RS00020 PF05762 VWA domain containing CoxE-like protein YPD4_RS00025 PF12592 Protein of unknown function (DUF3763) YPD4_RS00025 PF17868 AAA lid domain YPD4_RS00025 PF07728 AAA domain (dynein-related subfamily) YPD4_RS00030 PF02705 K+ potassium transporter YPD4_RS00035 PF05025 RbsD / FucU transport protein family YPD4_RS00040 PF00294 pfkB family carbohydrate kinase YPD4_RS00050 PF07690 Major Facilitator Superfamily YPD4_RS00055 PF07729 FCD domain YPD4_RS00055 PF00392 Bacterial regulatory proteins, gntR family YPD4_RS00085 PF00872 Transposase, Mutator family YPD4_RS00090 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPD4_RS00095 PF12804 MobA-like NTP transferase domain YPD4_RS00100 PF06288 Protein of unknown function (DUF1040) YPD4_RS00105 PF01636 Phosphotransferase enzyme family YPD4_RS00115 PF01612 3'-5' exonuclease YPD4_RS00115 PF00476 DNA polymerase family A YPD4_RS00115 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPD4_RS00115 PF01367 5'-3' exonuclease, C-terminal SAM fold YPD4_RS00125 PF01797 Transposase IS200 like YPD4_RS00130 PF01926 50S ribosome-binding GTPase YPD4_RS00135 PF04220 Der GTPase activator (YihI) YPD4_RS00140 PF06969 HemN C-terminal domain YPD4_RS00140 PF04055 Radical SAM superfamily YPD4_RS00145 PF00158 Sigma-54 interaction domain YPD4_RS00145 PF00072 Response regulator receiver domain YPD4_RS00145 PF02954 Bacterial regulatory protein, Fis family YPD4_RS00150 PF00989 PAS fold YPD4_RS00150 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS00150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS00155 PF03951 Glutamine synthetase, beta-Grasp domain YPD4_RS00155 PF00120 Glutamine synthetase, catalytic domain YPD4_RS00165 PF03144 Elongation factor Tu domain 2 YPD4_RS00165 PF00009 Elongation factor Tu GTP binding domain YPD4_RS00165 PF00679 Elongation factor G C-terminus YPD4_RS00170 PF13419 Haloacid dehalogenase-like hydrolase YPD4_RS00175 PF03631 Virulence factor BrkB YPD4_RS00180 PF02580 D-Tyr-tRNA(Tyr) deacylase YPD4_RS00185 PF01695 IstB-like ATP binding protein YPD4_RS00190 PF00665 Integrase core domain YPD4_RS00190 PF02796 Helix-turn-helix domain of resolvase YPD4_RS00195 PF00583 Acetyltransferase (GNAT) family YPD4_RS00195 PF09500 Putative thioesterase (yiiD_Cterm) YPD4_RS00200 PF05170 AsmA family YPD4_RS00210 PF03616 Sodium/glutamate symporter YPD4_RS00215 PF17191 RecG wedge domain YPD4_RS00215 PF00271 Helicase conserved C-terminal domain YPD4_RS00215 PF00270 DEAD/DEAH box helicase YPD4_RS00220 PF12105 SpoU, rRNA methylase, C-terminal YPD4_RS00220 PF00588 SpoU rRNA Methylase family YPD4_RS00225 PF13291 ACT domain YPD4_RS00225 PF02824 TGS domain YPD4_RS00225 PF04607 Region found in RelA / SpoT proteins YPD4_RS00230 PF01192 RNA polymerase Rpb6 YPD4_RS00235 PF00625 Guanylate kinase YPD4_RS00240 PF03120 NAD-dependent DNA ligase OB-fold domain YPD4_RS00240 PF01653 NAD-dependent DNA ligase adenylation domain YPD4_RS00245 PF03458 UPF0126 domain YPD4_RS00250 PF03755 YicC-like family, N-terminal region YPD4_RS00250 PF08340 Domain of unknown function (DUF1732) YPD4_RS00255 PF01138 3' exoribonuclease family, domain 1 YPD4_RS00255 PF03725 3' exoribonuclease family, domain 2 YPD4_RS00260 PF00156 Phosphoribosyl transferase domain YPD4_RS00265 PF00440 Bacterial regulatory proteins, tetR family YPD4_RS00270 PF00692 dUTPase YPD4_RS00275 PF04127 DNA / pantothenate metabolism flavoprotein YPD4_RS00275 PF02441 Flavoprotein YPD4_RS00280 PF04002 RadC-like JAB domain YPD4_RS00285 PF00830 Ribosomal L28 family YPD4_RS00290 PF00471 Ribosomal protein L33 YPD4_RS00295 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPD4_RS00295 PF06827 Zinc finger found in FPG and IleRS YPD4_RS00295 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPD4_RS00300 PF01467 Cytidylyltransferase-like YPD4_RS00305 PF00535 Glycosyl transferase family 2 YPD4_RS00310 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPD4_RS00315 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPD4_RS00320 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPD4_RS00325 PF01370 NAD dependent epimerase/dehydratase family YPD4_RS00330 PF00155 Aminotransferase class I and II YPD4_RS00335 PF00107 Zinc-binding dehydrogenase YPD4_RS00335 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_RS00345 PF01551 Peptidase family M23 YPD4_RS00350 PF01676 Metalloenzyme superfamily YPD4_RS00350 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPD4_RS00355 PF00581 Rhodanese-like domain YPD4_RS00360 PF00462 Glutaredoxin YPD4_RS00365 PF02556 Preprotein translocase subunit SecB YPD4_RS00370 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPD4_RS00370 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPD4_RS00380 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_RS00380 PF06426 Serine acetyltransferase, N-terminal YPD4_RS00385 PF00588 SpoU rRNA Methylase family YPD4_RS00390 PF02805 Metal binding domain of Ada YPD4_RS00390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPD4_RS00390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPD4_RS00390 PF12833 Helix-turn-helix domain YPD4_RS00395 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS00395 PF00672 HAMP domain YPD4_RS00395 PF16527 Two-component sensor protein CpxA, periplasmic domain YPD4_RS00400 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS00400 PF00072 Response regulator receiver domain YPD4_RS00405 PF07813 LTXXQ motif family protein YPD4_RS00410 PF04754 Putative transposase, YhgA-like YPD4_RS00415 PF01545 Cation efflux family YPD4_RS00415 PF16916 Dimerisation domain of Zinc Transporter YPD4_RS00420 PF00365 Phosphofructokinase YPD4_RS00435 PF00939 Sodium:sulfate symporter transmembrane region YPD4_RS00440 PF03737 Aldolase/RraA YPD4_RS00445 PF02585 GlcNAc-PI de-N-acetylase YPD4_RS00450 PF03466 LysR substrate binding domain YPD4_RS00450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS00455 PF00121 Triosephosphate isomerase YPD4_RS00460 PF07305 Protein of unknown function (DUF1454) YPD4_RS00465 PF05656 Protein of unknown function (DUF805) YPD4_RS00470 PF00970 Oxidoreductase FAD-binding domain YPD4_RS00470 PF00175 Oxidoreductase NAD-binding domain YPD4_RS00475 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPD4_RS00480 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_RS00480 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_RS00485 PF00230 Major intrinsic protein YPD4_RS00495 PF06005 Cell division protein ZapB YPD4_RS00505 PF03412 Peptidase C39 family YPD4_RS00505 PF00664 ABC transporter transmembrane region YPD4_RS00505 PF00005 ABC transporter YPD4_RS00510 PF00529 HlyD membrane-fusion protein of T1SS YPD4_RS00510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_RS00530 PF03737 Aldolase/RraA YPD4_RS00535 PF01040 UbiA prenyltransferase family YPD4_RS00540 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_RS00540 PF07724 AAA domain (Cdc48 subfamily) YPD4_RS00540 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_RS00545 PF00227 Proteasome subunit YPD4_RS00550 PF05036 Sporulation related domain YPD4_RS00555 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS00565 PF17764 3′ DNA-binding domain (3′BD) YPD4_RS00565 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPD4_RS00565 PF18074 Primosomal protein N C-terminal domain YPD4_RS00565 PF00270 DEAD/DEAH box helicase YPD4_RS00565 PF00271 Helicase conserved C-terminal domain YPD4_RS00570 PF01197 Ribosomal protein L31 YPD4_RS00575 PF05360 yiaA/B two helix domain YPD4_RS00585 PF01340 Met Apo-repressor, MetJ YPD4_RS00595 PF00742 Homoserine dehydrogenase YPD4_RS00595 PF03447 Homoserine dehydrogenase, NAD binding domain YPD4_RS00595 PF00696 Amino acid kinase family YPD4_RS00600 PF02219 Methylenetetrahydrofolate reductase YPD4_RS00605 PF00665 Integrase core domain YPD4_RS00605 PF13276 HTH-like domain YPD4_RS00605 PF13333 Integrase core domain YPD4_RS00615 PF00455 DeoR C terminal sensor domain YPD4_RS00615 PF08220 DeoR-like helix-turn-helix domain YPD4_RS00620 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPD4_RS00620 PF01694 Rhomboid family YPD4_RS00625 PF00581 Rhodanese-like domain YPD4_RS00630 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS00630 PF17874 MalT-like TPR region YPD4_RS00635 PF00343 Carbohydrate phosphorylase YPD4_RS00640 PF00343 Carbohydrate phosphorylase YPD4_RS00645 PF02446 4-alpha-glucanotransferase YPD4_RS00650 PF01106 NifU-like domain YPD4_RS00650 PF01521 Iron-sulphur cluster biosynthesis YPD4_RS00655 PF00156 Phosphoribosyl transferase domain YPD4_RS00660 PF00561 alpha/beta hydrolase fold YPD4_RS00665 PF07338 Protein of unknown function (DUF1471) YPD4_RS00670 PF09012 FeoC like transcriptional regulator YPD4_RS00675 PF07670 Nucleoside recognition YPD4_RS00675 PF02421 Ferrous iron transport protein B YPD4_RS00675 PF17910 FeoB cytosolic helical domain YPD4_RS00675 PF07664 Ferrous iron transport protein B C terminus YPD4_RS00680 PF04023 FeoA domain YPD4_RS00690 PF17674 HHH domain YPD4_RS00690 PF00575 S1 RNA binding domain YPD4_RS00690 PF16921 Tex protein YqgF-like domain YPD4_RS00690 PF09371 Tex-like protein N-terminal domain YPD4_RS00695 PF03449 Transcription elongation factor, N-terminal YPD4_RS00695 PF01272 Transcription elongation factor, GreA/GreB, C-term YPD4_RS00700 PF00072 Response regulator receiver domain YPD4_RS00700 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS00705 PF00672 HAMP domain YPD4_RS00705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS00705 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS00710 PF01293 Phosphoenolpyruvate carboxykinase YPD4_RS00715 PF01430 Hsp33 protein YPD4_RS00720 PF01479 S4 domain YPD4_RS00725 PF13419 Haloacid dehalogenase-like hydrolase YPD4_RS00730 PF07095 Intracellular growth attenuator protein IgaA YPD4_RS00740 PF00293 NUDIX domain YPD4_RS00745 PF00912 Transglycosylase YPD4_RS00745 PF00905 Penicillin binding protein transpeptidase domain YPD4_RS00745 PF17092 Penicillin-binding protein OB-like domain YPD4_RS00780 PF01202 Shikimate kinase YPD4_RS00785 PF01761 3-dehydroquinate synthase YPD4_RS00790 PF05036 Sporulation related domain YPD4_RS00795 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPD4_RS00800 PF00834 Ribulose-phosphate 3 epimerase family YPD4_RS00805 PF13419 Haloacid dehalogenase-like hydrolase YPD4_RS00810 PF00579 tRNA synthetases class I (W and Y) YPD4_RS00815 PF10414 Sirohaem synthase dimerisation region YPD4_RS00815 PF14824 Sirohaem biosynthesis protein central YPD4_RS00815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPD4_RS00820 PF01226 Formate/nitrite transporter YPD4_RS00825 PF13806 Rieske-like [2Fe-2S] domain YPD4_RS00830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPD4_RS00830 PF04324 BFD-like [2Fe-2S] binding domain YPD4_RS00830 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_RS00830 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPD4_RS00830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPD4_RS00835 PF07969 Amidohydrolase family YPD4_RS00840 PF07690 Major Facilitator Superfamily YPD4_RS00850 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS00855 PF02056 Family 4 glycosyl hydrolase YPD4_RS00855 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPD4_RS00860 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPD4_RS00865 PF05872 Bacterial protein of unknown function (DUF853) YPD4_RS00870 PF00117 Glutamine amidotransferase class-I YPD4_RS00875 PF00202 Aminotransferase class-III YPD4_RS00880 PF12805 FUSC-like inner membrane protein yccS YPD4_RS00885 PF00027 Cyclic nucleotide-binding domain YPD4_RS00885 PF13545 Crp-like helix-turn-helix domain YPD4_RS00890 PF02566 OsmC-like protein YPD4_RS00900 PF00485 Phosphoribulokinase / Uridine kinase family YPD4_RS00905 PF06794 Uncharacterised protein family (UPF0270) YPD4_RS00910 PF00561 alpha/beta hydrolase fold YPD4_RS00915 PF01810 LysE type translocator YPD4_RS00920 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD4_RS00925 PF00005 ABC transporter YPD4_RS00930 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS00935 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPD4_RS00945 PF00535 Glycosyl transferase family 2 YPD4_RS00955 PF02525 Flavodoxin-like fold YPD4_RS00960 PF00999 Sodium/hydrogen exchanger family YPD4_RS00960 PF02254 TrkA-N domain YPD4_RS00965 PF09526 Probable metal-binding protein (DUF2387) YPD4_RS00970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD4_RS00975 PF04102 SlyX YPD4_RS00980 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPD4_RS00980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD4_RS00985 PF13309 HTH domain YPD4_RS00985 PF08348 YheO-like PAS domain YPD4_RS00990 PF02635 DsrE/DsrF-like family YPD4_RS00995 PF02635 DsrE/DsrF-like family YPD4_RS01000 PF04077 DsrH like protein YPD4_RS01005 PF00164 Ribosomal protein S12/S23 YPD4_RS01010 PF00177 Ribosomal protein S7p/S5e YPD4_RS01015 PF14492 Elongation Factor G, domain II YPD4_RS01015 PF00679 Elongation factor G C-terminus YPD4_RS01015 PF03144 Elongation factor Tu domain 2 YPD4_RS01015 PF03764 Elongation factor G, domain IV YPD4_RS01015 PF00009 Elongation factor Tu GTP binding domain YPD4_RS01020 PF03143 Elongation factor Tu C-terminal domain YPD4_RS01020 PF03144 Elongation factor Tu domain 2 YPD4_RS01020 PF00009 Elongation factor Tu GTP binding domain YPD4_RS01025 PF01797 Transposase IS200 like YPD4_RS01030 PF04324 BFD-like [2Fe-2S] binding domain YPD4_RS01035 PF00210 Ferritin-like domain YPD4_RS01040 PF00338 Ribosomal protein S10p/S20e YPD4_RS01045 PF00297 Ribosomal protein L3 YPD4_RS01050 PF00573 Ribosomal protein L4/L1 family YPD4_RS01055 PF00276 Ribosomal protein L23 YPD4_RS01060 PF03947 Ribosomal Proteins L2, C-terminal domain YPD4_RS01060 PF00181 Ribosomal Proteins L2, RNA binding domain YPD4_RS01065 PF00203 Ribosomal protein S19 YPD4_RS01070 PF00237 Ribosomal protein L22p/L17e YPD4_RS01075 PF07650 KH domain YPD4_RS01075 PF00189 Ribosomal protein S3, C-terminal domain YPD4_RS01080 PF00252 Ribosomal protein L16p/L10e YPD4_RS01085 PF00831 Ribosomal L29 protein YPD4_RS01090 PF00366 Ribosomal protein S17 YPD4_RS01095 PF00238 Ribosomal protein L14p/L23e YPD4_RS01100 PF00467 KOW motif YPD4_RS01100 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPD4_RS01105 PF00673 ribosomal L5P family C-terminus YPD4_RS01105 PF00281 Ribosomal protein L5 YPD4_RS01110 PF00253 Ribosomal protein S14p/S29e YPD4_RS01115 PF00410 Ribosomal protein S8 YPD4_RS01120 PF00347 Ribosomal protein L6 YPD4_RS01125 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPD4_RS01130 PF03719 Ribosomal protein S5, C-terminal domain YPD4_RS01130 PF00333 Ribosomal protein S5, N-terminal domain YPD4_RS01135 PF00327 Ribosomal protein L30p/L7e YPD4_RS01140 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPD4_RS01150 PF00444 Ribosomal protein L36 YPD4_RS01155 PF00416 Ribosomal protein S13/S18 YPD4_RS01160 PF00411 Ribosomal protein S11 YPD4_RS01165 PF01479 S4 domain YPD4_RS01165 PF00163 Ribosomal protein S4/S9 N-terminal domain YPD4_RS01170 PF01000 RNA polymerase Rpb3/RpoA insert domain YPD4_RS01170 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPD4_RS01170 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPD4_RS01175 PF01196 Ribosomal protein L17 YPD4_RS01180 PF13411 MerR HTH family regulatory protein YPD4_RS01185 PF03889 Alternative ribosome-rescue factor A YPD4_RS01190 PF01741 Large-conductance mechanosensitive channel, MscL YPD4_RS01195 PF02254 TrkA-N domain YPD4_RS01195 PF02080 TrkA-C domain YPD4_RS01200 PF01029 NusB family YPD4_RS01200 PF01189 16S rRNA methyltransferase RsmB/F YPD4_RS01205 PF02911 Formyl transferase, C-terminal domain YPD4_RS01205 PF00551 Formyl transferase YPD4_RS01210 PF01327 Polypeptide deformylase YPD4_RS01215 PF17782 DprA winged helix domain YPD4_RS01215 PF02481 DNA recombination-mediator protein A YPD4_RS01220 PF04361 Protein of unknown function (DUF494) YPD4_RS01225 PF01396 Topoisomerase DNA binding C4 zinc finger YPD4_RS01230 PF01300 Telomere recombination YPD4_RS01235 PF01488 Shikimate / quinate 5-dehydrogenase YPD4_RS01235 PF08501 Shikimate dehydrogenase substrate binding domain YPD4_RS01235 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPD4_RS01240 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_RS01245 PF01695 IstB-like ATP binding protein YPD4_RS01250 PF02796 Helix-turn-helix domain of resolvase YPD4_RS01250 PF00665 Integrase core domain YPD4_RS01260 PF00474 Sodium:solute symporter family YPD4_RS01265 PF04341 Protein of unknown function, DUF485 YPD4_RS01270 PF13193 AMP-binding enzyme C-terminal domain YPD4_RS01270 PF00501 AMP-binding enzyme YPD4_RS01270 PF16177 Acetyl-coenzyme A synthetase N-terminus YPD4_RS01275 PF00375 Sodium:dicarboxylate symporter family YPD4_RS01280 PF00072 Response regulator receiver domain YPD4_RS01280 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS01285 PF00672 HAMP domain YPD4_RS01285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS01285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPD4_RS01285 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS01285 PF01627 Hpt domain YPD4_RS01285 PF00072 Response regulator receiver domain YPD4_RS01290 PF03958 Bacterial type II/III secretion system short domain YPD4_RS01290 PF00263 Bacterial type II and III secretion system protein YPD4_RS01305 PF14525 AraC-binding-like domain YPD4_RS01305 PF12833 Helix-turn-helix domain YPD4_RS01325 PF01514 Secretory protein of YscJ/FliF family YPD4_RS01340 PF00771 FHIPEP family YPD4_RS01345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_RS01345 PF18269 T3SS EscN ATPase C-terminal domain YPD4_RS01360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD4_RS01365 PF00813 FliP family YPD4_RS01370 PF01313 Bacterial export proteins, family 3 YPD4_RS01375 PF01311 Bacterial export proteins, family 1 YPD4_RS01385 PF04143 Sulphur transport YPD4_RS01390 PF01206 Sulfurtransferase TusA YPD4_RS01395 PF03466 LysR substrate binding domain YPD4_RS01395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS01400 PF03222 Tryptophan/tyrosine permease family YPD4_RS01405 PF01053 Cys/Met metabolism PLP-dependent enzyme YPD4_RS01410 PF00005 ABC transporter YPD4_RS01415 PF01032 FecCD transport family YPD4_RS01420 PF01497 Periplasmic binding protein YPD4_RS01425 PF05171 Haemin-degrading HemS.ChuX domain YPD4_RS01435 PF13460 NAD(P)H-binding YPD4_RS01440 PF06228 Haem utilisation ChuX/HutX YPD4_RS01445 PF04055 Radical SAM superfamily YPD4_RS01465 PF11202 Phosphoribosyl transferase (PRTase) YPD4_RS01465 PF15608 PELOTA RNA binding domain YPD4_RS01485 PF02342 TerD domain YPD4_RS01495 PF05099 Tellurite resistance protein TerB YPD4_RS01500 PF03741 Integral membrane protein TerC family YPD4_RS01505 PF02342 TerD domain YPD4_RS01510 PF02342 TerD domain YPD4_RS01520 PF00577 Outer membrane usher protein YPD4_RS01520 PF13953 PapC C-terminal domain YPD4_RS01520 PF13954 PapC N-terminal domain YPD4_RS01525 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS01545 PF08031 Berberine and berberine like YPD4_RS01545 PF01565 FAD binding domain YPD4_RS01550 PF12951 Passenger-associated-transport-repeat YPD4_RS01555 PF04345 Chorismate lyase YPD4_RS01560 PF01040 UbiA prenyltransferase family YPD4_RS01565 PF01553 Acyltransferase YPD4_RS01570 PF01219 Prokaryotic diacylglycerol kinase YPD4_RS01575 PF00717 Peptidase S24-like YPD4_RS01575 PF01726 LexA DNA binding domain YPD4_RS01580 PF01475 Ferric uptake regulator family YPD4_RS01585 PF01207 Dihydrouridine synthase (Dus) YPD4_RS01590 PF09583 Phage shock protein G (Phageshock_PspG) YPD4_RS01595 PF00107 Zinc-binding dehydrogenase YPD4_RS01595 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_RS01600 PF03796 DnaB-like helicase C terminal domain YPD4_RS01600 PF00772 DnaB-like helicase N terminal domain YPD4_RS01605 PF01168 Alanine racemase, N-terminal domain YPD4_RS01605 PF00842 Alanine racemase, C-terminal domain YPD4_RS01610 PF00155 Aminotransferase class I and II YPD4_RS01615 PF04237 YjbR YPD4_RS01620 PF17760 UvrA interaction domain YPD4_RS01620 PF17755 UvrA DNA-binding domain YPD4_RS01620 PF00005 ABC transporter YPD4_RS01625 PF00436 Single-strand binding protein family YPD4_RS01630 PF05336 L-rhamnose mutarotase YPD4_RS01635 PF00465 Iron-containing alcohol dehydrogenase YPD4_RS01640 PF00596 Class II Aldolase and Adducin N-terminal domain YPD4_RS01650 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_RS01650 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_RS01665 PF12833 Helix-turn-helix domain YPD4_RS01665 PF02311 AraC-like ligand binding domain YPD4_RS01670 PF02311 AraC-like ligand binding domain YPD4_RS01670 PF12833 Helix-turn-helix domain YPD4_RS01675 PF06379 L-rhamnose-proton symport protein (RhaT) YPD4_RS01710 PF13247 4Fe-4S dicluster domain YPD4_RS01710 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPD4_RS01710 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_RS01715 PF13247 4Fe-4S dicluster domain YPD4_RS01715 PF12800 4Fe-4S binding domain YPD4_RS01720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_RS01720 PF00384 Molybdopterin oxidoreductase YPD4_RS01720 PF01568 Molydopterin dinucleotide binding domain YPD4_RS01725 PF02683 Cytochrome C biogenesis protein transmembrane region YPD4_RS01725 PF11412 Disulphide bond corrector protein DsbC YPD4_RS01730 PF03091 CutA1 divalent ion tolerance protein YPD4_RS01735 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPD4_RS01740 PF10415 Fumarase C C-terminus YPD4_RS01740 PF00206 Lyase YPD4_RS01745 PF04186 FxsA cytoplasmic membrane protein YPD4_RS01750 PF00166 Chaperonin 10 Kd subunit YPD4_RS01755 PF00118 TCP-1/cpn60 chaperonin family YPD4_RS01760 PF13698 Domain of unknown function (DUF4156) YPD4_RS01765 PF04055 Radical SAM superfamily YPD4_RS01770 PF01132 Elongation factor P (EF-P) OB domain YPD4_RS01770 PF08207 Elongation factor P (EF-P) KOW-like domain YPD4_RS01770 PF09285 Elongation factor P, C-terminal YPD4_RS01775 PF00893 Small Multidrug Resistance protein YPD4_RS01780 PF02313 Fumarate reductase subunit D YPD4_RS01785 PF02300 Fumarate reductase subunit C YPD4_RS01790 PF13085 2Fe-2S iron-sulfur cluster binding domain YPD4_RS01790 PF13183 4Fe-4S dicluster domain YPD4_RS01795 PF02910 Fumarate reductase flavoprotein C-term YPD4_RS01795 PF00890 FAD binding domain YPD4_RS01805 PF00152 tRNA synthetases class II (D, K and N) YPD4_RS01810 PF00924 Mechanosensitive ion channel YPD4_RS01810 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPD4_RS01810 PF12795 Mechanosensitive ion channel porin domain YPD4_RS01815 PF02666 Phosphatidylserine decarboxylase YPD4_RS01820 PF03193 RsgA GTPase YPD4_RS01830 PF00929 Exonuclease YPD4_RS01850 PF08331 Domain of unknown function (DUF1730) YPD4_RS01855 PF03853 YjeF-related protein N-terminus YPD4_RS01855 PF01256 Carbohydrate kinase YPD4_RS01860 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPD4_RS01865 PF01520 N-acetylmuramoyl-L-alanine amidase YPD4_RS01870 PF08676 MutL C terminal dimerisation domain YPD4_RS01870 PF01119 DNA mismatch repair protein, C-terminal domain YPD4_RS01880 PF17209 Hfq protein YPD4_RS01885 PF16360 GTP-binding GTPase Middle Region YPD4_RS01885 PF13167 GTP-binding GTPase N-terminal YPD4_RS01885 PF01926 50S ribosome-binding GTPase YPD4_RS01890 PF01145 SPFH domain / Band 7 family YPD4_RS01890 PF12221 Bacterial membrane protein N terminal YPD4_RS01895 PF01145 SPFH domain / Band 7 family YPD4_RS01900 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPD4_RS01905 PF00709 Adenylosuccinate synthetase YPD4_RS01910 PF02082 Transcriptional regulator YPD4_RS01920 PF00588 SpoU rRNA Methylase family YPD4_RS01920 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPD4_RS01925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPD4_RS01925 PF02770 Acyl-CoA dehydrogenase, middle domain YPD4_RS01925 PF18158 Adaptive response protein AidB N-terminal domain YPD4_RS01930 PF07338 Protein of unknown function (DUF1471) YPD4_RS01940 PF01695 IstB-like ATP binding protein YPD4_RS01945 PF00665 Integrase core domain YPD4_RS01945 PF02796 Helix-turn-helix domain of resolvase YPD4_RS01950 PF12102 Domain of unknown function (DUF3578) YPD4_RS01950 PF07728 AAA domain (dynein-related subfamily) YPD4_RS01965 PF01527 Transposase YPD4_RS01970 PF01555 DNA methylase YPD4_RS01995 PF00665 Integrase core domain YPD4_RS02020 PF05987 Bacterial protein of unknown function (DUF898) YPD4_RS02030 PF12833 Helix-turn-helix domain YPD4_RS02035 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD4_RS02040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD4_RS02050 PF00391 PEP-utilising enzyme, mobile domain YPD4_RS02050 PF05524 PEP-utilising enzyme, N-terminal YPD4_RS02050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD4_RS02050 PF02896 PEP-utilising enzyme, TIM barrel domain YPD4_RS02050 PF00381 PTS HPr component phosphorylation site YPD4_RS02055 PF10696 Protein of unknown function (DUF2501) YPD4_RS02060 PF03992 Antibiotic biosynthesis monooxygenase YPD4_RS02065 PF01791 DeoC/LacD family aldolase YPD4_RS02070 PF13407 Periplasmic binding protein domain YPD4_RS02075 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS02080 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS02085 PF00005 ABC transporter YPD4_RS02100 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_RS02100 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_RS02105 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPD4_RS02125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_RS02130 PF00873 AcrB/AcrD/AcrF family YPD4_RS02150 PF01095 Pectinesterase YPD4_RS02155 PF00990 Diguanylate cyclase, GGDEF domain YPD4_RS02160 PF07256 Protein of unknown function (DUF1435) YPD4_RS02170 PF08468 Methyltransferase small domain N-terminal YPD4_RS02170 PF05175 Methyltransferase small domain YPD4_RS02175 PF03603 DNA polymerase III psi subunit YPD4_RS02180 PF00583 Acetyltransferase (GNAT) family YPD4_RS02185 PF16658 Class II release factor RF3, C-terminal domain YPD4_RS02185 PF03144 Elongation factor Tu domain 2 YPD4_RS02185 PF00009 Elongation factor Tu GTP binding domain YPD4_RS02190 PF04972 BON domain YPD4_RS02195 PF07043 Protein of unknown function (DUF1328) YPD4_RS02200 PF01734 Patatin-like phospholipase YPD4_RS02205 PF01026 TatD related DNase YPD4_RS02210 PF07670 Nucleoside recognition YPD4_RS02210 PF01773 Na+ dependent nucleoside transporter N-terminus YPD4_RS02210 PF07662 Na+ dependent nucleoside transporter C-terminus YPD4_RS02215 PF01791 DeoC/LacD family aldolase YPD4_RS02220 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPD4_RS02220 PF02885 Glycosyl transferase family, helical bundle domain YPD4_RS02220 PF00591 Glycosyl transferase family, a/b domain YPD4_RS02225 PF02885 Glycosyl transferase family, helical bundle domain YPD4_RS02225 PF00591 Glycosyl transferase family, a/b domain YPD4_RS02225 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPD4_RS02230 PF01676 Metalloenzyme superfamily YPD4_RS02235 PF01048 Phosphorylase superfamily YPD4_RS02240 PF10144 Bacterial virulence factor haemolysin YPD4_RS02245 PF18429 Domain of unknown function (DUF5609) YPD4_RS02250 PF18073 Rubredoxin metal binding domain YPD4_RS02255 PF13521 AAA domain YPD4_RS02255 PF01381 Helix-turn-helix YPD4_RS02260 PF02661 Fic/DOC family YPD4_RS02270 PF00691 OmpA family YPD4_RS02275 PF17152 Periplasmic sensor domain YPD4_RS02275 PF00990 Diguanylate cyclase, GGDEF domain YPD4_RS02285 PF00690 Cation transporter/ATPase, N-terminus YPD4_RS02285 PF00689 Cation transporting ATPase, C-terminus YPD4_RS02290 PF01464 Transglycosylase SLT domain YPD4_RS02290 PF14718 Soluble lytic murein transglycosylase L domain YPD4_RS02295 PF01371 Trp repressor protein YPD4_RS02300 PF01931 Protein of unknown function DUF84 YPD4_RS02305 PF00300 Histidine phosphatase superfamily (branch 1) YPD4_RS02310 PF12833 Helix-turn-helix domain YPD4_RS02310 PF06445 GyrI-like small molecule binding domain YPD4_RS02315 PF05981 CreA protein YPD4_RS02320 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS02320 PF00072 Response regulator receiver domain YPD4_RS02330 PF08544 GHMP kinases C terminal YPD4_RS02330 PF00288 GHMP kinases N terminal domain YPD4_RS02335 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_RS02335 PF14821 Threonine synthase N terminus YPD4_RS02340 PF03883 Peroxide stress protein YaaA YPD4_RS02345 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPD4_RS02350 PF00994 Probable molybdopterin binding domain YPD4_RS02355 PF07690 Major Facilitator Superfamily YPD4_RS02365 PF01184 GPR1/FUN34/yaaH family YPD4_RS02370 PF00012 Hsp70 protein YPD4_RS02375 PF00684 DnaJ central domain YPD4_RS02375 PF01556 DnaJ C terminal domain YPD4_RS02375 PF00226 DnaJ domain YPD4_RS02385 PF03466 LysR substrate binding domain YPD4_RS02385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS02390 PF01649 Ribosomal protein S20 YPD4_RS02400 PF06574 FAD synthetase YPD4_RS02400 PF01687 Riboflavin kinase YPD4_RS02405 PF00133 tRNA synthetases class I (I, L, M and V) YPD4_RS02405 PF06827 Zinc finger found in FPG and IleRS YPD4_RS02405 PF08264 Anticodon-binding domain of tRNA YPD4_RS02410 PF01252 Signal peptidase (SPase) II YPD4_RS02415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD4_RS02420 PF02401 LytB protein YPD4_RS02435 PF01797 Transposase IS200 like YPD4_RS02440 PF01113 Dihydrodipicolinate reductase, N-terminus YPD4_RS02440 PF05173 Dihydrodipicolinate reductase, C-terminus YPD4_RS02445 PF00117 Glutamine amidotransferase class-I YPD4_RS02445 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPD4_RS02450 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPD4_RS02450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPD4_RS02450 PF02142 MGS-like domain YPD4_RS02455 PF01810 LysE type translocator YPD4_RS02460 PF06738 Putative threonine/serine exporter YPD4_RS02465 PF12821 Threonine/Serine exporter, ThrE YPD4_RS02470 PF00186 Dihydrofolate reductase YPD4_RS02480 PF01797 Transposase IS200 like YPD4_RS02495 PF00149 Calcineurin-like phosphoesterase YPD4_RS02500 PF04379 ApaG domain YPD4_RS02505 PF00398 Ribosomal RNA adenine dimethylase YPD4_RS02510 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPD4_RS02515 PF09312 SurA N-terminal domain YPD4_RS02515 PF00639 PPIC-type PPIASE domain YPD4_RS02520 PF03968 OstA-like protein YPD4_RS02520 PF04453 LPS transport system D YPD4_RS02525 PF05099 Tellurite resistance protein TerB YPD4_RS02525 PF00226 DnaJ domain YPD4_RS02530 PF00849 RNA pseudouridylate synthase YPD4_RS02545 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPD4_RS02550 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPD4_RS02565 PF05947 Type VI secretion system, TssF YPD4_RS02575 PF17871 AAA lid domain YPD4_RS02575 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_RS02575 PF07724 AAA domain (Cdc48 subfamily) YPD4_RS02575 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_RS02580 PF04717 Type VI secretion system, phage-baseplate injector YPD4_RS02580 PF06715 Gp5 C-terminal repeat (3 copies) YPD4_RS02615 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPD4_RS02620 PF05736 OprF membrane domain YPD4_RS02620 PF00691 OmpA family YPD4_RS02625 PF14331 ImcF-related N-terminal domain YPD4_RS02625 PF06761 Intracellular multiplication and human macrophage-killing YPD4_RS02625 PF06744 Type VI secretion protein IcmF C-terminal YPD4_RS02635 PF18337 RapA N-terminal Tudor like domain YPD4_RS02635 PF12137 RNA polymerase recycling family C-terminal YPD4_RS02635 PF18339 RapA N-terminal Tudor like domain 1 YPD4_RS02635 PF00271 Helicase conserved C-terminal domain YPD4_RS02635 PF00176 SNF2 family N-terminal domain YPD4_RS02640 PF00136 DNA polymerase family B YPD4_RS02640 PF03104 DNA polymerase family B, exonuclease domain YPD4_RS02645 PF09335 SNARE associated Golgi protein YPD4_RS02650 PF00005 ABC transporter YPD4_RS02655 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS02670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_RS02670 PF12793 Sugar transport-related sRNA regulator N-term YPD4_RS02680 PF07690 Major Facilitator Superfamily YPD4_RS02685 PF01695 IstB-like ATP binding protein YPD4_RS02690 PF02796 Helix-turn-helix domain of resolvase YPD4_RS02690 PF00665 Integrase core domain YPD4_RS02695 PF07690 Major Facilitator Superfamily YPD4_RS02700 PF00694 Aconitase C-terminal domain YPD4_RS02705 PF00330 Aconitase family (aconitate hydratase) YPD4_RS02710 PF00180 Isocitrate/isopropylmalate dehydrogenase YPD4_RS02715 PF00682 HMGL-like YPD4_RS02715 PF08502 LeuA allosteric (dimerisation) domain YPD4_RS02725 PF01797 Transposase IS200 like YPD4_RS02735 PF03466 LysR substrate binding domain YPD4_RS02735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS02745 PF00501 AMP-binding enzyme YPD4_RS02755 PF00205 Thiamine pyrophosphate enzyme, central domain YPD4_RS02755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_RS02755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_RS02760 PF10369 Small subunit of acetolactate synthase YPD4_RS02765 PF01797 Transposase IS200 like YPD4_RS02775 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_RS02775 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS02780 PF06610 L-alanine exporter YPD4_RS02785 PF02381 MraZ protein, putative antitoxin-like YPD4_RS02790 PF01795 MraW methylase family YPD4_RS02795 PF04999 Cell division protein FtsL YPD4_RS02800 PF03717 Penicillin-binding Protein dimerisation domain YPD4_RS02800 PF00905 Penicillin binding protein transpeptidase domain YPD4_RS02805 PF02875 Mur ligase family, glutamate ligase domain YPD4_RS02805 PF01225 Mur ligase family, catalytic domain YPD4_RS02805 PF08245 Mur ligase middle domain YPD4_RS02810 PF01225 Mur ligase family, catalytic domain YPD4_RS02810 PF08245 Mur ligase middle domain YPD4_RS02810 PF02875 Mur ligase family, glutamate ligase domain YPD4_RS02815 PF00953 Glycosyl transferase family 4 YPD4_RS02815 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPD4_RS02820 PF08245 Mur ligase middle domain YPD4_RS02820 PF02875 Mur ligase family, glutamate ligase domain YPD4_RS02825 PF01098 Cell cycle protein YPD4_RS02830 PF03033 Glycosyltransferase family 28 N-terminal domain YPD4_RS02830 PF04101 Glycosyltransferase family 28 C-terminal domain YPD4_RS02835 PF08245 Mur ligase middle domain YPD4_RS02835 PF01225 Mur ligase family, catalytic domain YPD4_RS02835 PF02875 Mur ligase family, glutamate ligase domain YPD4_RS02840 PF01820 D-ala D-ala ligase N-terminus YPD4_RS02840 PF07478 D-ala D-ala ligase C-terminus YPD4_RS02845 PF08478 POTRA domain, FtsQ-type YPD4_RS02845 PF03799 Cell division protein FtsQ YPD4_RS02850 PF02491 SHS2 domain inserted in FTSA YPD4_RS02855 PF12327 FtsZ family, C-terminal domain YPD4_RS02855 PF00091 Tubulin/FtsZ family, GTPase domain YPD4_RS02860 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPD4_RS02870 PF06558 Secretion monitor precursor protein (SecM) YPD4_RS02875 PF07517 SecA DEAD-like domain YPD4_RS02875 PF02810 SEC-C motif YPD4_RS02875 PF07516 SecA Wing and Scaffold domain YPD4_RS02875 PF01043 SecA preprotein cross-linking domain YPD4_RS02880 PF00293 NUDIX domain YPD4_RS02885 PF01695 IstB-like ATP binding protein YPD4_RS02890 PF02796 Helix-turn-helix domain of resolvase YPD4_RS02890 PF00665 Integrase core domain YPD4_RS02895 PF13409 Glutathione S-transferase, N-terminal domain YPD4_RS02900 PF07681 DoxX YPD4_RS02910 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPD4_RS02915 PF05957 Bacterial protein of unknown function (DUF883) YPD4_RS02930 PF13721 SecD export protein N-terminal TM region YPD4_RS02935 PF09335 SNARE associated Golgi protein YPD4_RS02945 PF00392 Bacterial regulatory proteins, gntR family YPD4_RS02945 PF07729 FCD domain YPD4_RS02950 PF07690 Major Facilitator Superfamily YPD4_RS02960 PF02614 Glucuronate isomerase YPD4_RS02965 PF08125 Mannitol dehydrogenase C-terminal domain YPD4_RS02965 PF01232 Mannitol dehydrogenase Rossmann domain YPD4_RS02975 PF10688 Bacterial inner membrane protein YPD4_RS02990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_RS02995 PF01863 Protein of unknown function DUF45 YPD4_RS03000 PF03797 Autotransporter beta-domain YPD4_RS03005 PF05175 Methyltransferase small domain YPD4_RS03010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPD4_RS03010 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_RS03015 PF03729 Short repeat of unknown function (DUF308) YPD4_RS03035 PF00092 von Willebrand factor type A domain YPD4_RS03045 PF02342 TerD domain YPD4_RS03050 PF00092 von Willebrand factor type A domain YPD4_RS03055 PF17287 POTRA domain YPD4_RS03055 PF08479 POTRA domain, ShlB-type YPD4_RS03055 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_RS03070 PF04829 Pre-toxin domain with VENN motif YPD4_RS03070 PF13332 Hemagglutinin repeat YPD4_RS03075 PF04829 Pre-toxin domain with VENN motif YPD4_RS03075 PF13332 Hemagglutinin repeat YPD4_RS03085 PF04829 Pre-toxin domain with VENN motif YPD4_RS03085 PF05860 haemagglutination activity domain YPD4_RS03085 PF13332 Hemagglutinin repeat YPD4_RS03085 PF13018 Extended Signal Peptide of Type V secretion system YPD4_RS03090 PF13332 Hemagglutinin repeat YPD4_RS03090 PF13018 Extended Signal Peptide of Type V secretion system YPD4_RS03090 PF05860 haemagglutination activity domain YPD4_RS03090 PF04829 Pre-toxin domain with VENN motif YPD4_RS03110 PF00005 ABC transporter YPD4_RS03110 PF03459 TOBE domain YPD4_RS03110 PF17912 MalK OB fold domain YPD4_RS03115 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPD4_RS03120 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS03125 PF01547 Bacterial extracellular solute-binding protein YPD4_RS03130 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS03135 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS03145 PF14310 Fibronectin type III-like domain YPD4_RS03145 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPD4_RS03145 PF00933 Glycosyl hydrolase family 3 N terminal domain YPD4_RS03155 PF04632 Fusaric acid resistance protein family YPD4_RS03160 PF00529 HlyD membrane-fusion protein of T1SS YPD4_RS03160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_RS03180 PF00155 Aminotransferase class I and II YPD4_RS03200 PF01042 Endoribonuclease L-PSP YPD4_RS03220 PF03466 LysR substrate binding domain YPD4_RS03220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS03280 PF00140 Sigma-70 factor, region 1.2 YPD4_RS03280 PF04545 Sigma-70, region 4 YPD4_RS03280 PF03979 Sigma-70 factor, region 1.1 YPD4_RS03280 PF04546 Sigma-70, non-essential region YPD4_RS03280 PF04539 Sigma-70 region 3 YPD4_RS03280 PF04542 Sigma-70 region 2 YPD4_RS03290 PF01165 Ribosomal protein S21 YPD4_RS03295 PF00814 Glycoprotease family YPD4_RS03300 PF02660 Glycerol-3-phosphate acyltransferase YPD4_RS03305 PF02152 Dihydroneopterin aldolase YPD4_RS03310 PF02673 Bacitracin resistance protein BacA YPD4_RS03320 PF08239 Bacterial SH3 domain YPD4_RS03325 PF01928 CYTH domain YPD4_RS03330 PF03710 Glutamate-ammonia ligase adenylyltransferase YPD4_RS03330 PF08335 GlnD PII-uridylyltransferase YPD4_RS03335 PF01467 Cytidylyltransferase-like YPD4_RS03335 PF00294 pfkB family carbohydrate kinase YPD4_RS03345 PF04380 Membrane fusogenic activity YPD4_RS03355 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPD4_RS03360 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPD4_RS03370 PF06693 Protein of unknown function (DUF1190) YPD4_RS03380 PF02321 Outer membrane efflux protein YPD4_RS03385 PF00293 NUDIX domain YPD4_RS03390 PF06853 Protein of unknown function (DUF1249) YPD4_RS03395 PF00149 Calcineurin-like phosphoesterase YPD4_RS03400 PF05728 Uncharacterised protein family (UPF0227) YPD4_RS03405 PF00204 DNA gyrase B YPD4_RS03405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS03405 PF00986 DNA gyrase B subunit, carboxyl terminus YPD4_RS03405 PF01751 Toprim domain YPD4_RS03410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS03410 PF03466 LysR substrate binding domain YPD4_RS03415 PF02525 Flavodoxin-like fold YPD4_RS03420 PF03989 DNA gyrase C-terminal domain, beta-propeller YPD4_RS03420 PF00521 DNA gyrase/topoisomerase IV, subunit A YPD4_RS03425 PF01553 Acyltransferase YPD4_RS03430 PF07731 Multicopper oxidase YPD4_RS03430 PF07732 Multicopper oxidase YPD4_RS03440 PF00248 Aldo/keto reductase family YPD4_RS03450 PF00465 Iron-containing alcohol dehydrogenase YPD4_RS03455 PF06719 AraC-type transcriptional regulator N-terminus YPD4_RS03455 PF12833 Helix-turn-helix domain YPD4_RS03460 PF09335 SNARE associated Golgi protein YPD4_RS03465 PF01053 Cys/Met metabolism PLP-dependent enzyme YPD4_RS03470 PF01618 MotA/TolQ/ExbB proton channel family YPD4_RS03475 PF02472 Biopolymer transport protein ExbD/TolR YPD4_RS03510 PF00437 Type II/IV secretion system protein YPD4_RS03525 PF04972 BON domain YPD4_RS03525 PF00263 Bacterial type II and III secretion system protein YPD4_RS03525 PF13629 Pilus formation protein N terminal region YPD4_RS03530 PF04972 BON domain YPD4_RS03530 PF00263 Bacterial type II and III secretion system protein YPD4_RS03530 PF13629 Pilus formation protein N terminal region YPD4_RS03545 PF01797 Transposase IS200 like YPD4_RS03555 PF01797 Transposase IS200 like YPD4_RS03560 PF13954 PapC N-terminal domain YPD4_RS03560 PF13953 PapC C-terminal domain YPD4_RS03560 PF00577 Outer membrane usher protein YPD4_RS03565 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_RS03565 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS03570 PF09222 Fimbrial adhesin F17-AG, lectin domain YPD4_RS03570 PF00419 Fimbrial protein YPD4_RS03575 PF01497 Periplasmic binding protein YPD4_RS03595 PF01312 FlhB HrpN YscU SpaS Family YPD4_RS03600 PF01311 Bacterial export proteins, family 1 YPD4_RS03605 PF01313 Bacterial export proteins, family 3 YPD4_RS03610 PF00813 FliP family YPD4_RS03615 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD4_RS03625 PF02954 Bacterial regulatory protein, Fis family YPD4_RS03625 PF00072 Response regulator receiver domain YPD4_RS03625 PF00158 Sigma-54 interaction domain YPD4_RS03630 PF02049 Flagellar hook-basal body complex protein FliE YPD4_RS03635 PF01514 Secretory protein of YscJ/FliF family YPD4_RS03635 PF08345 Flagellar M-ring protein C-terminal YPD4_RS03650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_RS03650 PF18269 T3SS EscN ATPase C-terminal domain YPD4_RS03670 PF13144 Chaperone for flagella basal body P-ring formation YPD4_RS03675 PF00460 Flagella basal body rod protein YPD4_RS03680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_RS03680 PF00460 Flagella basal body rod protein YPD4_RS03685 PF03963 Flagellar hook capping protein - N-terminal region YPD4_RS03685 PF13860 FlgD Ig-like domain YPD4_RS03685 PF13861 FlgD Tudor-like domain YPD4_RS03690 PF07559 Flagellar basal body protein FlaE YPD4_RS03690 PF00460 Flagella basal body rod protein YPD4_RS03690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_RS03710 PF00460 Flagella basal body rod protein YPD4_RS03710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_RS03715 PF00460 Flagella basal body rod protein YPD4_RS03715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_RS03720 PF02107 Flagellar L-ring protein YPD4_RS03725 PF02119 Flagellar P-ring protein YPD4_RS03735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_RS03735 PF00460 Flagella basal body rod protein YPD4_RS03755 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS03755 PF18500 CadC C-terminal domain 1 YPD4_RS03760 PF00700 Bacterial flagellin C-terminal helical region YPD4_RS03760 PF00669 Bacterial flagellin N-terminal helical region YPD4_RS03765 PF00669 Bacterial flagellin N-terminal helical region YPD4_RS03765 PF00700 Bacterial flagellin C-terminal helical region YPD4_RS03770 PF00700 Bacterial flagellin C-terminal helical region YPD4_RS03770 PF00669 Bacterial flagellin N-terminal helical region YPD4_RS03775 PF02465 Flagellar hook-associated protein 2 N-terminus YPD4_RS03775 PF07195 Flagellar hook-associated protein 2 C-terminus YPD4_RS03775 PF07196 Flagellin hook IN motif YPD4_RS03800 PF04542 Sigma-70 region 2 YPD4_RS03800 PF04545 Sigma-70, region 4 YPD4_RS03805 PF01618 MotA/TolQ/ExbB proton channel family YPD4_RS03810 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPD4_RS03810 PF00691 OmpA family YPD4_RS03865 PF00939 Sodium:sulfate symporter transmembrane region YPD4_RS03880 PF05593 RHS Repeat YPD4_RS03880 PF03527 RHS protein YPD4_RS03890 PF04717 Type VI secretion system, phage-baseplate injector YPD4_RS03900 PF12951 Passenger-associated-transport-repeat YPD4_RS03910 PF02447 GntP family permease YPD4_RS03925 PF00664 ABC transporter transmembrane region YPD4_RS03925 PF00005 ABC transporter YPD4_RS03930 PF04954 Siderophore-interacting protein YPD4_RS03930 PF08021 Siderophore-interacting FAD-binding domain YPD4_RS03930 PF00005 ABC transporter YPD4_RS03930 PF00664 ABC transporter transmembrane region YPD4_RS03940 PF00975 Thioesterase domain YPD4_RS03955 PF00501 AMP-binding enzyme YPD4_RS03955 PF00668 Condensation domain YPD4_RS03955 PF08242 Methyltransferase domain YPD4_RS03955 PF00550 Phosphopantetheine attachment site YPD4_RS03960 PF13193 AMP-binding enzyme C-terminal domain YPD4_RS03960 PF00668 Condensation domain YPD4_RS03960 PF00501 AMP-binding enzyme YPD4_RS03965 PF00501 AMP-binding enzyme YPD4_RS03965 PF00550 Phosphopantetheine attachment site YPD4_RS03965 PF08242 Methyltransferase domain YPD4_RS03965 PF00668 Condensation domain YPD4_RS03970 PF01695 IstB-like ATP binding protein YPD4_RS03975 PF00665 Integrase core domain YPD4_RS03975 PF02796 Helix-turn-helix domain of resolvase YPD4_RS03980 PF16197 Ketoacyl-synthetase C-terminal extension YPD4_RS03980 PF00668 Condensation domain YPD4_RS03980 PF13193 AMP-binding enzyme C-terminal domain YPD4_RS03980 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_RS03980 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_RS03980 PF00202 Aminotransferase class-III YPD4_RS03980 PF00501 AMP-binding enzyme YPD4_RS03980 PF00550 Phosphopantetheine attachment site YPD4_RS03985 PF07715 TonB-dependent Receptor Plug Domain YPD4_RS03985 PF00593 TonB dependent receptor YPD4_RS03990 PF07687 Peptidase dimerisation domain YPD4_RS03990 PF01546 Peptidase family M20/M25/M40 YPD4_RS03995 PF03806 AbgT putative transporter family YPD4_RS04000 PF12468 Type III secretion system leucine rich repeat protein YPD4_RS04000 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD4_RS04005 PF12468 Type III secretion system leucine rich repeat protein YPD4_RS04005 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD4_RS04005 PF12468 Type III secretion system leucine rich repeat protein YPD4_RS04005 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD4_RS04010 PF12468 Type III secretion system leucine rich repeat protein YPD4_RS04010 PF14496 C-terminal novel E3 ligase, LRR-interacting YPD4_RS04015 PF03797 Autotransporter beta-domain YPD4_RS04025 PF07906 ShET2 enterotoxin, N-terminal region YPD4_RS04030 PF00873 AcrB/AcrD/AcrF family YPD4_RS04035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_RS04035 PF00529 HlyD membrane-fusion protein of T1SS YPD4_RS04045 PF00990 Diguanylate cyclase, GGDEF domain YPD4_RS04045 PF08447 PAS fold YPD4_RS04045 PF00563 EAL domain YPD4_RS04045 PF08448 PAS fold YPD4_RS04050 PF13333 Integrase core domain YPD4_RS04050 PF13276 HTH-like domain YPD4_RS04050 PF00665 Integrase core domain YPD4_RS04065 PF00593 TonB dependent receptor YPD4_RS04065 PF07715 TonB-dependent Receptor Plug Domain YPD4_RS04070 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPD4_RS04075 PF06276 Ferric iron reductase FhuF-like transporter YPD4_RS04075 PF04183 IucA / IucC family YPD4_RS04085 PF04183 IucA / IucC family YPD4_RS04085 PF06276 Ferric iron reductase FhuF-like transporter YPD4_RS04090 PF04183 IucA / IucC family YPD4_RS04090 PF06276 Ferric iron reductase FhuF-like transporter YPD4_RS04110 PF03472 Autoinducer binding domain YPD4_RS04110 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS04115 PF00765 Autoinducer synthase YPD4_RS04120 PF02517 CPBP intramembrane metalloprotease YPD4_RS04130 PF03811 InsA N-terminal domain YPD4_RS04130 PF12759 InsA C-terminal domain YPD4_RS04150 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPD4_RS04175 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_RS04175 PF17871 AAA lid domain YPD4_RS04175 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_RS04175 PF07724 AAA domain (Cdc48 subfamily) YPD4_RS04180 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) YPD4_RS04180 PF04717 Type VI secretion system, phage-baseplate injector YPD4_RS04180 PF13296 Putative type VI secretion system Rhs element Vgr YPD4_RS04195 PF12759 InsA C-terminal domain YPD4_RS04195 PF03811 InsA N-terminal domain YPD4_RS04200 PF03400 IS1 transposase YPD4_RS04220 PF01276 Orn/Lys/Arg decarboxylase, major domain YPD4_RS04220 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPD4_RS04220 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPD4_RS04225 PF13407 Periplasmic binding protein domain YPD4_RS04230 PF00005 ABC transporter YPD4_RS04235 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS04240 PF07715 TonB-dependent Receptor Plug Domain YPD4_RS04250 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPD4_RS04250 PF01464 Transglycosylase SLT domain YPD4_RS04255 PF04362 Bacterial Fe(2+) trafficking YPD4_RS04260 PF10576 Iron-sulfur binding domain of endonuclease III YPD4_RS04260 PF00730 HhH-GPD superfamily base excision DNA repair protein YPD4_RS04260 PF14815 NUDIX domain YPD4_RS04260 PF00633 Helix-hairpin-helix motif YPD4_RS04265 PF02390 Putative methyltransferase YPD4_RS04270 PF04320 Protein with unknown function (DUF469) YPD4_RS04275 PF04960 Glutaminase YPD4_RS04280 PF11101 Protein of unknown function (DUF2884) YPD4_RS04285 PF11101 Protein of unknown function (DUF2884) YPD4_RS04290 PF16671 Actin cross-linking domain YPD4_RS04290 PF12146 Serine aminopeptidase, S33 YPD4_RS04290 PF07634 RtxA repeat YPD4_RS04290 PF11713 Peptidase C80 family YPD4_RS04290 PF11647 Membrane Localization Domain YPD4_RS04295 PF04055 Radical SAM superfamily YPD4_RS04295 PF06969 HemN C-terminal domain YPD4_RS04305 PF02594 Uncharacterised ACR, YggU family COG1872 YPD4_RS04310 PF02325 YGGT family YPD4_RS04315 PF03807 NADP oxidoreductase coenzyme F420-dependent YPD4_RS04315 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPD4_RS04320 PF01168 Alanine racemase, N-terminal domain YPD4_RS04325 PF00437 Type II/IV secretion system protein YPD4_RS04330 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPD4_RS04335 PF00795 Carbon-nitrogen hydrolase YPD4_RS04340 PF03652 Holliday junction resolvase YPD4_RS04345 PF02622 Uncharacterized ACR, COG1678 YPD4_RS04350 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPD4_RS04350 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPD4_RS04355 PF04452 RNA methyltransferase YPD4_RS04360 PF04231 Endonuclease I YPD4_RS04365 PF17283 SprT-like zinc ribbon domain YPD4_RS04365 PF10263 SprT-like family YPD4_RS04370 PF02772 S-adenosylmethionine synthetase, central domain YPD4_RS04370 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPD4_RS04370 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPD4_RS04375 PF17810 Arginine decarboxylase helical bundle domain YPD4_RS04375 PF17944 Arginine decarboxylase C-terminal helical extension YPD4_RS04375 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPD4_RS04385 PF01435 Peptidase family M48 YPD4_RS04390 PF00456 Transketolase, thiamine diphosphate binding domain YPD4_RS04390 PF02779 Transketolase, pyrimidine binding domain YPD4_RS04390 PF02780 Transketolase, C-terminal domain YPD4_RS04405 PF00162 Phosphoglycerate kinase YPD4_RS04410 PF01116 Fructose-bisphosphate aldolase class-II YPD4_RS04420 PF00924 Mechanosensitive ion channel YPD4_RS04420 PF05552 Conserved TM helix YPD4_RS04425 PF01810 LysE type translocator YPD4_RS04430 PF04402 Protein of unknown function (DUF541) YPD4_RS04435 PF03466 LysR substrate binding domain YPD4_RS04435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS04440 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPD4_RS04445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_RS04445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_RS04445 PF01842 ACT domain YPD4_RS04450 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPD4_RS04455 PF05164 Cell division protein ZapA YPD4_RS04460 PF03695 Uncharacterised protein family (UPF0149) YPD4_RS04465 PF05195 Aminopeptidase P, N-terminal domain YPD4_RS04465 PF00557 Metallopeptidase family M24 YPD4_RS04470 PF01494 FAD binding domain YPD4_RS04475 PF01494 FAD binding domain YPD4_RS04480 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPD4_RS04480 PF01571 Aminomethyltransferase folate-binding domain YPD4_RS04485 PF01597 Glycine cleavage H-protein YPD4_RS04490 PF02347 Glycine cleavage system P-protein YPD4_RS04505 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_RS04505 PF05658 Head domain of trimeric autotransporter adhesin YPD4_RS04505 PF13018 Extended Signal Peptide of Type V secretion system YPD4_RS04505 PF03895 YadA-like membrane anchor domain YPD4_RS04515 PF03006 Haemolysin-III related YPD4_RS04525 PF01571 Aminomethyltransferase folate-binding domain YPD4_RS04530 PF03937 Flavinator of succinate dehydrogenase YPD4_RS04535 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPD4_RS04540 PF00072 Response regulator receiver domain YPD4_RS04540 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS04545 PF00672 HAMP domain YPD4_RS04545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS04545 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS04550 PF06123 Inner membrane protein CreD YPD4_RS04555 PF00258 Flavodoxin YPD4_RS04560 PF00589 Phage integrase family YPD4_RS04560 PF02899 Phage integrase, N-terminal SAM-like domain YPD4_RS04565 PF13098 Thioredoxin-like domain YPD4_RS04565 PF10411 Disulfide bond isomerase protein N-terminus YPD4_RS04570 PF17768 RecJ OB domain YPD4_RS04570 PF02272 DHHA1 domain YPD4_RS04570 PF01368 DHH family YPD4_RS04575 PF00472 RF-1 domain YPD4_RS04575 PF03462 PCRF domain YPD4_RS04580 PF00152 tRNA synthetases class II (D, K and N) YPD4_RS04580 PF01336 OB-fold nucleic acid binding domain YPD4_RS04590 PF00589 Phage integrase family YPD4_RS04590 PF13356 Arm DNA-binding domain YPD4_RS04590 PF14659 Phage integrase, N-terminal SAM-like domain YPD4_RS04615 PF15723 Motility quorum-sensing regulator, toxin of MqsA YPD4_RS04620 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPD4_RS04715 PF03551 Transcriptional regulator PadR-like family YPD4_RS04720 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPD4_RS04730 PF13407 Periplasmic binding protein domain YPD4_RS04735 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS04740 PF00005 ABC transporter YPD4_RS04745 PF17912 MalK OB fold domain YPD4_RS04745 PF00005 ABC transporter YPD4_RS04750 PF13416 Bacterial extracellular solute-binding protein YPD4_RS04755 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS04765 PF07745 Glycosyl hydrolase family 53 YPD4_RS04770 PF08533 Beta-galactosidase C-terminal domain YPD4_RS04770 PF02449 Beta-galactosidase YPD4_RS04770 PF08532 Beta-galactosidase trimerisation domain YPD4_RS04775 PF02378 Phosphotransferase system, EIIC YPD4_RS04775 PF00367 phosphotransferase system, EIIB YPD4_RS04780 PF02264 LamB porin YPD4_RS04785 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS04790 PF17137 Domain of unknown function (DUF5110) YPD4_RS04790 PF01055 Glycosyl hydrolases family 31 YPD4_RS04790 PF13802 Galactose mutarotase-like YPD4_RS04790 PF16338 Domain of unknown function (DUF4968) YPD4_RS04795 PF07690 Major Facilitator Superfamily YPD4_RS04800 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS04815 PF01116 Fructose-bisphosphate aldolase class-II YPD4_RS04825 PF00884 Sulfatase YPD4_RS04830 PF13186 Iron-sulfur cluster-binding domain YPD4_RS04830 PF04055 Radical SAM superfamily YPD4_RS04835 PF07470 Glycosyl Hydrolase Family 88 YPD4_RS04845 PF01979 Amidohydrolase family YPD4_RS04850 PF03610 PTS system fructose IIA component YPD4_RS04855 PF03613 PTS system mannose/fructose/sorbose family IID component YPD4_RS04860 PF03609 PTS system sorbose-specific iic component YPD4_RS04865 PF03830 PTS system sorbose subfamily IIB component YPD4_RS04870 PF01380 SIS domain YPD4_RS04875 PF08013 Tagatose 6 phosphate kinase YPD4_RS04880 PF08220 DeoR-like helix-turn-helix domain YPD4_RS04880 PF00455 DeoR C terminal sensor domain YPD4_RS04885 PF00884 Sulfatase YPD4_RS04890 PF01797 Transposase IS200 like YPD4_RS04895 PF02796 Helix-turn-helix domain of resolvase YPD4_RS04895 PF00665 Integrase core domain YPD4_RS04900 PF01695 IstB-like ATP binding protein YPD4_RS04905 PF09093 Lyase, catalytic YPD4_RS04905 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPD4_RS04905 PF09092 Lyase, N terminal YPD4_RS04905 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPD4_RS04930 PF00484 Carbonic anhydrase YPD4_RS04945 PF00263 Bacterial type II and III secretion system protein YPD4_RS04945 PF03958 Bacterial type II/III secretion system short domain YPD4_RS04950 PF00437 Type II/IV secretion system protein YPD4_RS04960 PF00482 Type II secretion system (T2SS), protein F YPD4_RS04965 PF07963 Prokaryotic N-terminal methylation motif YPD4_RS04965 PF08334 Type II secretion system (T2SS), protein G YPD4_RS04980 PF11612 Type II secretion system (T2SS), protein J YPD4_RS04980 PF07963 Prokaryotic N-terminal methylation motif YPD4_RS05000 PF01478 Type IV leader peptidase family YPD4_RS05000 PF06750 Bacterial Peptidase A24 N-terminal domain YPD4_RS05020 PF00672 HAMP domain YPD4_RS05020 PF02203 Tar ligand binding domain homologue YPD4_RS05020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_RS05035 PF03466 LysR substrate binding domain YPD4_RS05035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS05040 PF07690 Major Facilitator Superfamily YPD4_RS05045 PF03466 LysR substrate binding domain YPD4_RS05045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS05050 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPD4_RS05050 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPD4_RS05055 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS05060 PF01568 Molydopterin dinucleotide binding domain YPD4_RS05060 PF00384 Molybdopterin oxidoreductase YPD4_RS05065 PF13193 AMP-binding enzyme C-terminal domain YPD4_RS05065 PF01553 Acyltransferase YPD4_RS05065 PF00501 AMP-binding enzyme YPD4_RS05070 PF07690 Major Facilitator Superfamily YPD4_RS05085 PF00248 Aldo/keto reductase family YPD4_RS05105 PF00293 NUDIX domain YPD4_RS05110 PF02896 PEP-utilising enzyme, TIM barrel domain YPD4_RS05110 PF00391 PEP-utilising enzyme, mobile domain YPD4_RS05110 PF05524 PEP-utilising enzyme, N-terminal YPD4_RS05110 PF01590 GAF domain YPD4_RS05115 PF01790 Prolipoprotein diacylglyceryl transferase YPD4_RS05120 PF00303 Thymidylate synthase YPD4_RS05135 PF00665 Integrase core domain YPD4_RS05135 PF02796 Helix-turn-helix domain of resolvase YPD4_RS05140 PF01695 IstB-like ATP binding protein YPD4_RS05160 PF17946 RecC C-terminal domain YPD4_RS05165 PF16187 Middle or third domain of peptidase_M16 YPD4_RS05165 PF00675 Insulinase (Peptidase family M16) YPD4_RS05165 PF05193 Peptidase M16 inactive domain YPD4_RS05175 PF13538 UvrD-like helicase C-terminal domain YPD4_RS05180 PF00583 Acetyltransferase (GNAT) family YPD4_RS05180 PF00696 Amino acid kinase family YPD4_RS05185 PF11741 AMIN domain YPD4_RS05185 PF01520 N-acetylmuramoyl-L-alanine amidase YPD4_RS05200 PF03562 MltA specific insert domain YPD4_RS05200 PF06725 3D domain YPD4_RS05205 PF00899 ThiF family YPD4_RS05210 PF02657 Fe-S metabolism associated domain YPD4_RS05215 PF00266 Aminotransferase class-V YPD4_RS05220 PF03466 LysR substrate binding domain YPD4_RS05220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS05225 PF04241 Protein of unknown function (DUF423) YPD4_RS05230 PF01728 FtsJ-like methyltransferase YPD4_RS05230 PF18125 RlmM ferredoxin-like domain YPD4_RS05235 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPD4_RS05235 PF01367 5'-3' exonuclease, C-terminal SAM fold YPD4_RS05240 PF11892 Domain of unknown function (DUF3412) YPD4_RS05240 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPD4_RS05240 PF03641 Possible lysine decarboxylase YPD4_RS05245 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPD4_RS05245 PF14489 QueF-like protein YPD4_RS05250 PF07348 Syd protein (SUKH-2) YPD4_RS05255 PF01797 Transposase IS200 like YPD4_RS05260 PF04287 tRNA pseudouridine synthase C YPD4_RS05265 PF00849 RNA pseudouridylate synthase YPD4_RS05270 PF00258 Flavodoxin YPD4_RS05275 PF11944 Protein of unknown function (DUF3461) YPD4_RS05280 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPD4_RS05280 PF14602 Hexapeptide repeat of succinyl-transferase YPD4_RS05280 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_RS05285 PF01909 Nucleotidyltransferase domain YPD4_RS05285 PF01966 HD domain YPD4_RS05285 PF08335 GlnD PII-uridylyltransferase YPD4_RS05285 PF01842 ACT domain YPD4_RS05290 PF00557 Metallopeptidase family M24 YPD4_RS05295 PF00318 Ribosomal protein S2 YPD4_RS05305 PF00696 Amino acid kinase family YPD4_RS05310 PF01765 Ribosome recycling factor YPD4_RS05315 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPD4_RS05315 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPD4_RS05315 PF13288 DXP reductoisomerase C-terminal domain YPD4_RS05320 PF01255 Putative undecaprenyl diphosphate synthase YPD4_RS05330 PF02163 Peptidase family M50 YPD4_RS05330 PF17820 PDZ domain YPD4_RS05340 PF03938 Outer membrane protein (OmpH-like) YPD4_RS05345 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPD4_RS05345 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_RS05350 PF07977 FabA-like domain YPD4_RS05355 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPD4_RS05355 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_RS05360 PF02684 Lipid-A-disaccharide synthetase YPD4_RS05365 PF01351 Ribonuclease HII YPD4_RS05370 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPD4_RS05370 PF01336 OB-fold nucleic acid binding domain YPD4_RS05370 PF02811 PHP domain YPD4_RS05370 PF14579 Helix-hairpin-helix motif YPD4_RS05370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPD4_RS05375 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPD4_RS05380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPD4_RS05385 PF09179 TilS substrate binding domain YPD4_RS05385 PF01171 PP-loop family YPD4_RS05385 PF11734 TilS substrate C-terminal domain YPD4_RS05390 PF00034 Cytochrome c YPD4_RS05395 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPD4_RS05400 PF06786 Uncharacterised protein family (UPF0253) YPD4_RS05405 PF07152 YaeQ protein YPD4_RS05410 PF00472 RF-1 domain YPD4_RS05415 PF04170 NlpE N-terminal domain YPD4_RS05415 PF17185 NlpE C-terminal OB domain YPD4_RS05420 PF03129 Anticodon binding domain YPD4_RS05420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPD4_RS05420 PF04073 Aminoacyl-tRNA editing domain YPD4_RS05425 PF18389 TrmO C-terminal domain YPD4_RS05425 PF01980 tRNA-methyltransferase O YPD4_RS05435 PF03180 NLPA lipoprotein YPD4_RS05440 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS05485 PF00248 Aldo/keto reductase family YPD4_RS05495 PF03372 Endonuclease/Exonuclease/phosphatase family YPD4_RS05500 PF01476 LysM domain YPD4_RS05500 PF01464 Transglycosylase SLT domain YPD4_RS05505 PF00753 Metallo-beta-lactamase superfamily YPD4_RS05505 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPD4_RS05510 PF08241 Methyltransferase domain YPD4_RS05515 PF00075 RNase H YPD4_RS05520 PF00929 Exonuclease YPD4_RS05530 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPD4_RS05545 PF01695 IstB-like ATP binding protein YPD4_RS05550 PF02796 Helix-turn-helix domain of resolvase YPD4_RS05550 PF00665 Integrase core domain YPD4_RS05560 PF05973 Phage derived protein Gp49-like (DUF891) YPD4_RS05620 PF13356 Arm DNA-binding domain YPD4_RS05620 PF00589 Phage integrase family YPD4_RS05635 PF01668 SmpB protein YPD4_RS05640 PF03364 Polyketide cyclase / dehydrase and lipid transport YPD4_RS05645 PF03658 RnfH family Ubiquitin YPD4_RS05650 PF04355 SmpA / OmlA family YPD4_RS05655 PF02463 RecF/RecN/SMC N terminal domain YPD4_RS05660 PF01513 ATP-NAD kinase YPD4_RS05665 PF01025 GrpE YPD4_RS05670 PF00285 Citrate synthase, C-terminal domain YPD4_RS05675 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPD4_RS05680 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPD4_RS05685 PF02910 Fumarate reductase flavoprotein C-term YPD4_RS05685 PF00890 FAD binding domain YPD4_RS05690 PF13085 2Fe-2S iron-sulfur cluster binding domain YPD4_RS05695 PF16078 2-oxoglutarate dehydrogenase N-terminus YPD4_RS05695 PF00676 Dehydrogenase E1 component YPD4_RS05695 PF16870 2-oxoglutarate dehydrogenase C-terminal YPD4_RS05695 PF02779 Transketolase, pyrimidine binding domain YPD4_RS05700 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPD4_RS05700 PF00364 Biotin-requiring enzyme YPD4_RS05700 PF02817 e3 binding domain YPD4_RS05705 PF08442 ATP-grasp domain YPD4_RS05705 PF00549 CoA-ligase YPD4_RS05710 PF02629 CoA binding domain YPD4_RS05710 PF00549 CoA-ligase YPD4_RS05715 PF01654 Cytochrome bd terminal oxidase subunit I YPD4_RS05720 PF02322 Cytochrome bd terminal oxidase subunit II YPD4_RS05725 PF08173 Membrane bound YbgT-like protein YPD4_RS05730 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPD4_RS05735 PF03061 Thioesterase superfamily YPD4_RS05740 PF01618 MotA/TolQ/ExbB proton channel family YPD4_RS05745 PF02472 Biopolymer transport protein ExbD/TolR YPD4_RS05750 PF06519 TolA C-terminal YPD4_RS05750 PF06519 TolA C-terminal YPD4_RS05755 PF04052 TolB amino-terminal domain YPD4_RS05755 PF07676 WD40-like Beta Propeller Repeat YPD4_RS05760 PF00691 OmpA family YPD4_RS05765 PF13174 Tetratricopeptide repeat YPD4_RS05765 PF16331 TolA binding protein trimerisation YPD4_RS05785 PF02445 Quinolinate synthetase A protein YPD4_RS05790 PF04973 Nicotinamide mononucleotide transporter YPD4_RS05805 PF01695 IstB-like ATP binding protein YPD4_RS05815 PF00793 DAHP synthetase I family YPD4_RS05820 PF00300 Histidine phosphatase superfamily (branch 1) YPD4_RS05830 PF01263 Aldose 1-epimerase YPD4_RS05840 PF00288 GHMP kinases N terminal domain YPD4_RS05840 PF08544 GHMP kinases C terminal YPD4_RS05840 PF10509 Galactokinase galactose-binding signature YPD4_RS05845 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPD4_RS05845 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPD4_RS05850 PF16363 GDP-mannose 4,6 dehydratase YPD4_RS05865 PF00005 ABC transporter YPD4_RS05870 PF03459 TOBE domain YPD4_RS05870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS05875 PF10766 Multidrug efflux pump-associated protein AcrZ YPD4_RS05885 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS05890 PF03459 TOBE domain YPD4_RS05890 PF00005 ABC transporter YPD4_RS05900 PF10282 Lactonase, 7-bladed beta-propeller YPD4_RS05910 PF06968 Biotin and Thiamin Synthesis associated domain YPD4_RS05910 PF04055 Radical SAM superfamily YPD4_RS05915 PF00155 Aminotransferase class I and II YPD4_RS05920 PF08241 Methyltransferase domain YPD4_RS05930 PF00005 ABC transporter YPD4_RS05930 PF09383 NIL domain YPD4_RS05935 PF00271 Helicase conserved C-terminal domain YPD4_RS05935 PF12344 Ultra-violet resistance protein B YPD4_RS05935 PF02151 UvrB/uvrC motif YPD4_RS05935 PF17757 UvrB interaction domain YPD4_RS05935 PF04851 Type III restriction enzyme, res subunit YPD4_RS05940 PF09905 DNA-binding protein VF530 YPD4_RS05945 PF01933 Uncharacterised protein family UPF0052 YPD4_RS05955 PF04055 Radical SAM superfamily YPD4_RS05955 PF06463 Molybdenum Cofactor Synthesis C YPD4_RS05960 PF01967 MoaC family YPD4_RS05965 PF02597 ThiS family YPD4_RS05970 PF02391 MoaE protein YPD4_RS05975 PF01027 Inhibitor of apoptosis-promoting Bax1 YPD4_RS05985 PF01797 Transposase IS200 like YPD4_RS05990 PF05199 GMC oxidoreductase YPD4_RS05990 PF00732 GMC oxidoreductase YPD4_RS05995 PF00171 Aldehyde dehydrogenase family YPD4_RS06000 PF00440 Bacterial regulatory proteins, tetR family YPD4_RS06000 PF13977 BetI-type transcriptional repressor, C-terminal YPD4_RS06005 PF02028 BCCT, betaine/carnitine/choline family transporter YPD4_RS06010 PF03466 LysR substrate binding domain YPD4_RS06010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS06020 PF01048 Phosphorylase superfamily YPD4_RS06025 PF03825 Nucleoside H+ symporter YPD4_RS06030 PF01797 Transposase IS200 like YPD4_RS06035 PF03825 Nucleoside H+ symporter YPD4_RS06040 PF13801 Heavy-metal resistance YPD4_RS06045 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS06045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS06050 PF00072 Response regulator receiver domain YPD4_RS06050 PF02954 Bacterial regulatory protein, Fis family YPD4_RS06050 PF00158 Sigma-54 interaction domain YPD4_RS06055 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPD4_RS06060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS06060 PF03466 LysR substrate binding domain YPD4_RS06085 PF00005 ABC transporter YPD4_RS06090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_RS06095 PF00440 Bacterial regulatory proteins, tetR family YPD4_RS06095 PF09209 Tetracyclin repressor-like, C-terminal domain YPD4_RS06100 PF00270 DEAD/DEAH box helicase YPD4_RS06100 PF00271 Helicase conserved C-terminal domain YPD4_RS06105 PF13358 DDE superfamily endonuclease YPD4_RS06105 PF13592 Winged helix-turn helix YPD4_RS06135 PF01548 Transposase YPD4_RS06135 PF02371 Transposase IS116/IS110/IS902 family YPD4_RS06140 PF00270 DEAD/DEAH box helicase YPD4_RS06140 PF00271 Helicase conserved C-terminal domain YPD4_RS06160 PF01207 Dihydrouridine synthase (Dus) YPD4_RS06170 PF00768 D-alanyl-D-alanine carboxypeptidase YPD4_RS06175 PF09330 D-lactate dehydrogenase, membrane binding YPD4_RS06175 PF01565 FAD binding domain YPD4_RS06180 PF01928 CYTH domain YPD4_RS06185 PF01844 HNH endonuclease YPD4_RS06195 PF04226 Transglycosylase associated protein YPD4_RS06200 PF00005 ABC transporter YPD4_RS06210 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS06215 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS06220 PF07308 Protein of unknown function (DUF1456) YPD4_RS06225 PF02954 Bacterial regulatory protein, Fis family YPD4_RS06225 PF13188 PAS domain YPD4_RS06225 PF00158 Sigma-54 interaction domain YPD4_RS06230 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS06235 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS06240 PF00005 ABC transporter YPD4_RS06245 PF00005 ABC transporter YPD4_RS06260 PF00581 Rhodanese-like domain YPD4_RS06265 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD4_RS06270 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD4_RS06275 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS06280 PF00005 ABC transporter YPD4_RS06285 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS06290 PF13520 Amino acid permease YPD4_RS06295 PF01276 Orn/Lys/Arg decarboxylase, major domain YPD4_RS06295 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPD4_RS06295 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPD4_RS06305 PF00892 EamA-like transporter family YPD4_RS06310 PF00267 Gram-negative porin YPD4_RS06315 PF06733 DEAD_2 YPD4_RS06315 PF13307 Helicase C-terminal domain YPD4_RS06320 PF06628 Catalase-related immune-responsive YPD4_RS06320 PF00199 Catalase YPD4_RS06325 PF07437 YfaZ precursor YPD4_RS06330 PF03222 Tryptophan/tyrosine permease family YPD4_RS06335 PF00994 Probable molybdopterin binding domain YPD4_RS06340 PF03974 Ecotin YPD4_RS06345 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_RS06350 PF00268 Ribonucleotide reductase, small chain YPD4_RS06355 PF03477 ATP cone domain YPD4_RS06355 PF00317 Ribonucleotide reductase, all-alpha domain YPD4_RS06355 PF02867 Ribonucleotide reductase, barrel domain YPD4_RS06365 PF03989 DNA gyrase C-terminal domain, beta-propeller YPD4_RS06365 PF00521 DNA gyrase/topoisomerase IV, subunit A YPD4_RS06375 PF09456 RcsC Alpha-Beta-Loop (ABL) YPD4_RS06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS06375 PF00072 Response regulator receiver domain YPD4_RS06375 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS06380 PF00072 Response regulator receiver domain YPD4_RS06380 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS06385 PF16359 RcsD-ABL domain YPD4_RS06385 PF01627 Hpt domain YPD4_RS06385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS06390 PF16359 RcsD-ABL domain YPD4_RS06390 PF01627 Hpt domain YPD4_RS06390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS06395 PF07690 Major Facilitator Superfamily YPD4_RS06405 PF00267 Gram-negative porin YPD4_RS06425 PF00144 Beta-lactamase YPD4_RS06440 PF12706 Beta-lactamase superfamily domain YPD4_RS06445 PF02743 Cache domain YPD4_RS06445 PF00672 HAMP domain YPD4_RS06445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_RS06450 PF01278 Omptin family YPD4_RS06455 PF06183 DinI-like family YPD4_RS06460 PF00717 Peptidase S24-like YPD4_RS06460 PF01381 Helix-turn-helix YPD4_RS06465 PF06530 Phage antitermination protein Q YPD4_RS06470 PF17042 Nucleotide-binding C-terminal domain YPD4_RS06470 PF07005 Sugar-binding N-terminal domain YPD4_RS06480 PF00455 DeoR C terminal sensor domain YPD4_RS06480 PF08220 DeoR-like helix-turn-helix domain YPD4_RS06485 PF01261 Xylose isomerase-like TIM barrel YPD4_RS06505 PF17482 Phage tail sheath C-terminal domain YPD4_RS06505 PF04984 Phage tail sheath protein subtilisin-like domain YPD4_RS06545 PF04865 Baseplate J-like protein YPD4_RS06560 PF07484 Phage Tail Collar Domain YPD4_RS06565 PF01380 SIS domain YPD4_RS06565 PF01418 Helix-turn-helix domain, rpiR family YPD4_RS06570 PF00232 Glycosyl hydrolase family 1 YPD4_RS06590 PF05638 Type VI secretion system effector, Hcp YPD4_RS06605 PF00884 Sulfatase YPD4_RS06605 PF11893 Domain of unknown function (DUF3413) YPD4_RS06610 PF07208 Protein of unknown function (DUF1414) YPD4_RS06615 PF04245 37-kD nucleoid-associated bacterial protein YPD4_RS06625 PF01797 Transposase IS200 like YPD4_RS06630 PF01386 Ribosomal L25p family YPD4_RS06635 PF04851 Type III restriction enzyme, res subunit YPD4_RS06635 PF00271 Helicase conserved C-terminal domain YPD4_RS06640 PF00849 RNA pseudouridylate synthase YPD4_RS06640 PF01479 S4 domain YPD4_RS06645 PF07690 Major Facilitator Superfamily YPD4_RS06650 PF13989 YejG-like protein YPD4_RS06655 PF00005 ABC transporter YPD4_RS06655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_RS06660 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_RS06660 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS06665 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS06670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_RS06675 PF12792 CSS motif domain associated with EAL YPD4_RS06675 PF00563 EAL domain YPD4_RS06680 PF00877 NlpC/P60 family YPD4_RS06685 PF01569 PAP2 superfamily YPD4_RS06690 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPD4_RS06690 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPD4_RS06700 PF07729 FCD domain YPD4_RS06700 PF00392 Bacterial regulatory proteins, gntR family YPD4_RS06705 PF01232 Mannitol dehydrogenase Rossmann domain YPD4_RS06705 PF08125 Mannitol dehydrogenase C-terminal domain YPD4_RS06710 PF03786 D-mannonate dehydratase (UxuA) YPD4_RS06715 PF01132 Elongation factor P (EF-P) OB domain YPD4_RS06715 PF08207 Elongation factor P (EF-P) KOW-like domain YPD4_RS06715 PF09285 Elongation factor P, C-terminal YPD4_RS06720 PF03222 Tryptophan/tyrosine permease family YPD4_RS06725 PF03692 Putative zinc- or iron-chelating domain YPD4_RS06735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_RS06735 PF01842 ACT domain YPD4_RS06735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_RS06745 PF00171 Aldehyde dehydrogenase family YPD4_RS06750 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_RS06750 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_RS06755 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPD4_RS06765 PF00005 ABC transporter YPD4_RS06770 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS06775 PF00293 NUDIX domain YPD4_RS06780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD4_RS06780 PF00381 PTS HPr component phosphorylation site YPD4_RS06785 PF00294 pfkB family carbohydrate kinase YPD4_RS06790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD4_RS06790 PF02378 Phosphotransferase system, EIIC YPD4_RS06795 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS06800 PF17550 Family of unknown function YPD4_RS06810 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_RS06810 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS06815 PF00577 Outer membrane usher protein YPD4_RS06815 PF13953 PapC C-terminal domain YPD4_RS06815 PF13954 PapC N-terminal domain YPD4_RS06820 PF01261 Xylose isomerase-like TIM barrel YPD4_RS06835 PF00324 Amino acid permease YPD4_RS06845 PF01032 FecCD transport family YPD4_RS06850 PF00005 ABC transporter YPD4_RS06855 PF00593 TonB dependent receptor YPD4_RS06855 PF07715 TonB-dependent Receptor Plug Domain YPD4_RS06860 PF00043 Glutathione S-transferase, C-terminal domain YPD4_RS06860 PF13417 Glutathione S-transferase, N-terminal domain YPD4_RS06875 PF03180 NLPA lipoprotein YPD4_RS06880 PF09383 NIL domain YPD4_RS06880 PF00005 ABC transporter YPD4_RS06885 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS06890 PF07943 Penicillin-binding protein 5, C-terminal domain YPD4_RS06890 PF00768 D-alanyl-D-alanine carboxypeptidase YPD4_RS06905 PF08220 DeoR-like helix-turn-helix domain YPD4_RS06905 PF00455 DeoR C terminal sensor domain YPD4_RS06910 PF01791 DeoC/LacD family aldolase YPD4_RS06915 PF01569 PAP2 superfamily YPD4_RS06925 PF06826 Predicted Permease Membrane Region YPD4_RS06925 PF02080 TrkA-C domain YPD4_RS06930 PF00462 Glutaredoxin YPD4_RS06935 PF07214 Protein of unknown function (DUF1418) YPD4_RS06945 PF10722 Putative bacterial sensory transduction regulator YPD4_RS06950 PF13416 Bacterial extracellular solute-binding protein YPD4_RS06955 PF00005 ABC transporter YPD4_RS06955 PF08402 TOBE domain YPD4_RS06960 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS06965 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS06970 PF10767 Protein of unknown function (DUF2593) YPD4_RS06980 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_RS07010 PF00005 ABC transporter YPD4_RS07015 PF03059 Nicotianamine synthase protein YPD4_RS07020 PF10100 Staphylopine dehydrogenase YPD4_RS07025 PF00892 EamA-like transporter family YPD4_RS07035 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS07040 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS07045 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_RS07050 PF00005 ABC transporter YPD4_RS07055 PF01817 Chorismate mutase type II YPD4_RS07060 PF12883 Protein of unknown function (DUF3828) YPD4_RS07065 PF01370 NAD dependent epimerase/dehydratase family YPD4_RS07070 PF13460 NAD(P)H-binding YPD4_RS07070 PF11066 Protein of unknown function (DUF2867) YPD4_RS07075 PF01212 Beta-eliminating lyase YPD4_RS07080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_RS07080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_RS07080 PF00205 Thiamine pyrophosphate enzyme, central domain YPD4_RS07085 PF00970 Oxidoreductase FAD-binding domain YPD4_RS07085 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_RS07085 PF00175 Oxidoreductase NAD-binding domain YPD4_RS07090 PF03063 Prismane/CO dehydrogenase family YPD4_RS07095 PF03956 Lysine exporter LysO YPD4_RS07100 PF11398 Protein of unknown function (DUF2813) YPD4_RS07105 PF04393 Protein of unknown function (DUF535) YPD4_RS07110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_RS07115 PF12704 MacB-like periplasmic core domain YPD4_RS07115 PF00005 ABC transporter YPD4_RS07115 PF02687 FtsX-like permease family YPD4_RS07120 PF00313 'Cold-shock' DNA-binding domain YPD4_RS07125 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPD4_RS07130 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_RS07130 PF07724 AAA domain (Cdc48 subfamily) YPD4_RS07130 PF17871 AAA lid domain YPD4_RS07130 PF02861 Clp amino terminal domain, pathogenicity island component YPD4_RS07130 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_RS07140 PF01176 Translation initiation factor 1A / IF-1 YPD4_RS07150 PF00005 ABC transporter YPD4_RS07150 PF00664 ABC transporter transmembrane region YPD4_RS07155 PF00005 ABC transporter YPD4_RS07155 PF00664 ABC transporter transmembrane region YPD4_RS07165 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_RS07170 PF01037 Lrp/AsnC ligand binding domain YPD4_RS07175 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPD4_RS07175 PF17854 FtsK alpha domain YPD4_RS07175 PF09397 Ftsk gamma domain YPD4_RS07175 PF01580 FtsK/SpoIIIE family YPD4_RS07180 PF03548 Outer membrane lipoprotein carrier protein LolA YPD4_RS07185 PF16193 AAA C-terminal domain YPD4_RS07185 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_RS07185 PF12002 MgsA AAA+ ATPase C terminal YPD4_RS07190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPD4_RS07190 PF02403 Seryl-tRNA synthetase N-terminal domain YPD4_RS07195 PF07690 Major Facilitator Superfamily YPD4_RS07200 PF04055 Radical SAM superfamily YPD4_RS07215 PF01226 Formate/nitrite transporter YPD4_RS07220 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPD4_RS07220 PF18381 YcaO cyclodehydratase C-terminal domain YPD4_RS07225 PF17763 Glutaminase/Asparaginase C-terminal domain YPD4_RS07225 PF00710 Asparaginase, N-terminal YPD4_RS07230 PF13018 Extended Signal Peptide of Type V secretion system YPD4_RS07230 PF05658 Head domain of trimeric autotransporter adhesin YPD4_RS07230 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_RS07230 PF13018 Extended Signal Peptide of Type V secretion system YPD4_RS07230 PF03895 YadA-like membrane anchor domain YPD4_RS07230 PF05658 Head domain of trimeric autotransporter adhesin YPD4_RS07230 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_RS07230 PF03895 YadA-like membrane anchor domain YPD4_RS07245 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPD4_RS07250 PF02224 Cytidylate kinase YPD4_RS07255 PF00575 S1 RNA binding domain YPD4_RS07260 PF00216 Bacterial DNA-binding protein YPD4_RS07270 PF03772 Competence protein YPD4_RS07270 PF00753 Metallo-beta-lactamase superfamily YPD4_RS07275 PF00005 ABC transporter YPD4_RS07275 PF00664 ABC transporter transmembrane region YPD4_RS07280 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPD4_RS07285 PF07063 Domain of unknown function (DUF1338) YPD4_RS07295 PF00313 'Cold-shock' DNA-binding domain YPD4_RS07300 PF03966 Trm112p-like protein YPD4_RS07305 PF02348 Cytidylyltransferase YPD4_RS07310 PF01636 Phosphotransferase enzyme family YPD4_RS07320 PF13847 Methyltransferase domain YPD4_RS07325 PF17192 MukF middle domain YPD4_RS07325 PF03882 MukF winged-helix domain YPD4_RS07325 PF17193 MukF C-terminal domain YPD4_RS07330 PF04288 MukE-like family YPD4_RS07335 PF16330 MukB hinge domain YPD4_RS07335 PF04310 MukB N-terminal YPD4_RS07355 PF05951 Bacterial protein of unknown function (DUF882) YPD4_RS07365 PF00155 Aminotransferase class I and II YPD4_RS07370 PF00267 Gram-negative porin YPD4_RS07375 PF01336 OB-fold nucleic acid binding domain YPD4_RS07375 PF00152 tRNA synthetases class II (D, K and N) YPD4_RS07380 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPD4_RS07380 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPD4_RS07390 PF01180 Dihydroorotate dehydrogenase YPD4_RS07395 PF07126 Cell-division protein ZapC YPD4_RS07400 PF03473 MOSC domain YPD4_RS07400 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_RS07400 PF03476 MOSC N-terminal beta barrel domain YPD4_RS07405 PF10672 S-adenosylmethionine-dependent methyltransferase YPD4_RS07405 PF02926 THUMP domain YPD4_RS07405 PF01170 Putative RNA methylase family UPF0020 YPD4_RS07410 PF00005 ABC transporter YPD4_RS07410 PF16326 ABC transporter C-terminal domain YPD4_RS07410 PF12848 ABC transporter YPD4_RS07415 PF04403 Paraquat-inducible protein A YPD4_RS07420 PF02470 MlaD protein YPD4_RS07425 PF03886 ABC-type transport auxiliary lipoprotein component YPD4_RS07435 PF04957 Ribosome modulation factor YPD4_RS07445 PF01797 Transposase IS200 like YPD4_RS07450 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_RS07450 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_RS07455 PF01695 IstB-like ATP binding protein YPD4_RS07460 PF00665 Integrase core domain YPD4_RS07460 PF02796 Helix-turn-helix domain of resolvase YPD4_RS07465 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_RS07465 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_RS07475 PF07977 FabA-like domain YPD4_RS07480 PF05362 Lon protease (S16) C-terminal proteolytic domain YPD4_RS07480 PF13654 AAA domain YPD4_RS07485 PF06303 MatP N-terminal domain YPD4_RS07485 PF17414 MatP C-terminal ribbon-helix-helix domain YPD4_RS07490 PF01797 Transposase IS200 like YPD4_RS07500 PF01389 OmpA-like transmembrane domain YPD4_RS07500 PF00691 OmpA family YPD4_RS07505 PF03846 Cell division inhibitor SulA YPD4_RS07510 PF04993 TfoX N-terminal domain YPD4_RS07510 PF04994 TfoX C-terminal domain YPD4_RS07515 PF12805 FUSC-like inner membrane protein yccS YPD4_RS07520 PF03733 Inner membrane component domain YPD4_RS07525 PF12462 DNA helicase IV / RNA helicase N terminal YPD4_RS07525 PF00580 UvrD/REP helicase N-terminal domain YPD4_RS07525 PF13361 UvrD-like helicase C-terminal domain YPD4_RS07530 PF02142 MGS-like domain YPD4_RS07535 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPD4_RS07540 PF13380 CoA binding domain YPD4_RS07545 PF08755 Hemimethylated DNA-binding protein YccV like YPD4_RS07550 PF17785 PUA-like domain YPD4_RS07550 PF10672 S-adenosylmethionine-dependent methyltransferase YPD4_RS07555 PF00708 Acylphosphatase YPD4_RS07560 PF04358 DsrC like protein YPD4_RS07570 PF13610 DDE domain YPD4_RS07590 PF08031 Berberine and berberine like YPD4_RS07590 PF01565 FAD binding domain YPD4_RS07605 PF07977 FabA-like domain YPD4_RS07610 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_RS07610 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_RS07620 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPD4_RS07620 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPD4_RS07630 PF00378 Enoyl-CoA hydratase/isomerase YPD4_RS07645 PF00550 Phosphopantetheine attachment site YPD4_RS07650 PF00698 Acyl transferase domain YPD4_RS07665 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPD4_RS07680 PF00691 OmpA family YPD4_RS07680 PF05736 OprF membrane domain YPD4_RS07690 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_RS07690 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_RS07690 PF17871 AAA lid domain YPD4_RS07690 PF07724 AAA domain (Cdc48 subfamily) YPD4_RS07695 PF04717 Type VI secretion system, phage-baseplate injector YPD4_RS07695 PF13296 Putative type VI secretion system Rhs element Vgr YPD4_RS07695 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) YPD4_RS07715 PF12759 InsA C-terminal domain YPD4_RS07715 PF03811 InsA N-terminal domain YPD4_RS07755 PF13592 Winged helix-turn helix YPD4_RS07755 PF13358 DDE superfamily endonuclease YPD4_RS07815 PF00005 ABC transporter YPD4_RS07815 PF12848 ABC transporter YPD4_RS07825 PF00872 Transposase, Mutator family YPD4_RS07830 PF00899 ThiF family YPD4_RS07835 PF00994 Probable molybdopterin binding domain YPD4_RS07835 PF03454 MoeA C-terminal region (domain IV) YPD4_RS07835 PF03453 MoeA N-terminal region (domain I and II) YPD4_RS07845 PF00005 ABC transporter YPD4_RS07850 PF13533 Biotin-lipoyl like YPD4_RS07870 PF00756 Putative esterase YPD4_RS07875 PF00107 Zinc-binding dehydrogenase YPD4_RS07875 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_RS07880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS07880 PF03466 LysR substrate binding domain YPD4_RS07885 PF06779 Uncharacterised MFS-type transporter YbfB YPD4_RS07890 PF01227 GTP cyclohydrolase I YPD4_RS07895 PF04235 Protein of unknown function (DUF418) YPD4_RS07900 PF13407 Periplasmic binding protein domain YPD4_RS07905 PF00005 ABC transporter YPD4_RS07910 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS07915 PF02698 DUF218 domain YPD4_RS07920 PF03949 Malic enzyme, NAD binding domain YPD4_RS07920 PF00390 Malic enzyme, N-terminal domain YPD4_RS07925 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPD4_RS07925 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPD4_RS07930 PF04172 LrgB-like family YPD4_RS07935 PF03788 LrgA family YPD4_RS07940 PF07690 Major Facilitator Superfamily YPD4_RS07965 PF01797 Transposase IS200 like YPD4_RS07970 PF09334 tRNA synthetases class I (M) YPD4_RS07970 PF01588 Putative tRNA binding domain YPD4_RS07975 PF10609 NUBPL iron-transfer P-loop NTPase YPD4_RS07980 PF00485 Phosphoribulokinase / Uridine kinase family YPD4_RS07985 PF00692 dUTPase YPD4_RS07990 PF05170 AsmA family YPD4_RS07995 PF03741 Integral membrane protein TerC family YPD4_RS07995 PF03471 Transporter associated domain YPD4_RS07995 PF00571 CBS domain YPD4_RS08000 PF11575 FhuF 2Fe-2S C-terminal domain YPD4_RS08000 PF06276 Ferric iron reductase FhuF-like transporter YPD4_RS08005 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPD4_RS08010 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPD4_RS08020 PF06276 Ferric iron reductase FhuF-like transporter YPD4_RS08020 PF04183 IucA / IucC family YPD4_RS08025 PF00005 ABC transporter YPD4_RS08030 PF01032 FecCD transport family YPD4_RS08035 PF01032 FecCD transport family YPD4_RS08040 PF01497 Periplasmic binding protein YPD4_RS08045 PF00593 TonB dependent receptor YPD4_RS08045 PF07715 TonB-dependent Receptor Plug Domain YPD4_RS08045 PF07660 Secretin and TonB N terminus short domain YPD4_RS08050 PF04183 IucA / IucC family YPD4_RS08050 PF06276 Ferric iron reductase FhuF-like transporter YPD4_RS08055 PF00483 Nucleotidyl transferase YPD4_RS08060 PF00483 Nucleotidyl transferase YPD4_RS08065 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPD4_RS08065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPD4_RS08070 PF01502 Phosphoribosyl-AMP cyclohydrolase YPD4_RS08070 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPD4_RS08075 PF00977 Histidine biosynthesis protein YPD4_RS08080 PF00977 Histidine biosynthesis protein YPD4_RS08085 PF00117 Glutamine amidotransferase class-I YPD4_RS08090 PF00475 Imidazoleglycerol-phosphate dehydratase YPD4_RS08095 PF00155 Aminotransferase class I and II YPD4_RS08100 PF00815 Histidinol dehydrogenase YPD4_RS08105 PF01634 ATP phosphoribosyltransferase YPD4_RS08105 PF08029 HisG, C-terminal domain YPD4_RS08110 PF01370 NAD dependent epimerase/dehydratase family YPD4_RS08120 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS08125 PF00005 ABC transporter YPD4_RS08130 PF00005 ABC transporter YPD4_RS08135 PF00465 Iron-containing alcohol dehydrogenase YPD4_RS08145 PF13520 Amino acid permease YPD4_RS08150 PF08411 Exonuclease C-terminal YPD4_RS08150 PF00929 Exonuclease YPD4_RS08165 PF00872 Transposase, Mutator family YPD4_RS08170 PF02369 Bacterial Ig-like domain (group 1) YPD4_RS08170 PF11924 Inverse autotransporter, beta-domain YPD4_RS08170 PF09134 Invasin, domain 3 YPD4_RS08175 PF07690 Major Facilitator Superfamily YPD4_RS08180 PF04134 Protein of unknown function, DUF393 YPD4_RS08190 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD4_RS08195 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPD4_RS08195 PF13378 Enolase C-terminal domain-like YPD4_RS08200 PF01070 FMN-dependent dehydrogenase YPD4_RS08205 PF00764 Arginosuccinate synthase YPD4_RS08210 PF01554 MatE YPD4_RS08220 PF01522 Polysaccharide deacetylase YPD4_RS08230 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPD4_RS08240 PF00072 Response regulator receiver domain YPD4_RS08240 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS08245 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPD4_RS08255 PF03480 Bacterial extracellular solute-binding protein, family 7 YPD4_RS08260 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPD4_RS08260 PF01648 4'-phosphopantetheinyl transferase superfamily YPD4_RS08270 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPD4_RS08270 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPD4_RS08275 PF01306 LacY proton/sugar symporter YPD4_RS08280 PF00872 Transposase, Mutator family YPD4_RS08285 PF13419 Haloacid dehalogenase-like hydrolase YPD4_RS08290 PF14002 YniB-like protein YPD4_RS08295 PF03881 Fructosamine kinase YPD4_RS08305 PF00950 ABC 3 transport family YPD4_RS08310 PF00950 ABC 3 transport family YPD4_RS08315 PF00005 ABC transporter YPD4_RS08320 PF01297 Zinc-uptake complex component A periplasmic YPD4_RS08325 PF01464 Transglycosylase SLT domain YPD4_RS08330 PF01914 MarC family integral membrane protein YPD4_RS08345 PF13619 KTSC domain YPD4_RS08350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPD4_RS08350 PF02824 TGS domain YPD4_RS08350 PF03129 Anticodon binding domain YPD4_RS08350 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPD4_RS08355 PF05198 Translation initiation factor IF-3, N-terminal domain YPD4_RS08355 PF00707 Translation initiation factor IF-3, C-terminal domain YPD4_RS08360 PF01632 Ribosomal protein L35 YPD4_RS08365 PF00453 Ribosomal protein L20 YPD4_RS08370 PF01409 tRNA synthetases class II core domain (F) YPD4_RS08370 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPD4_RS08375 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPD4_RS08375 PF01588 Putative tRNA binding domain YPD4_RS08375 PF03147 Ferredoxin-fold anticodon binding domain YPD4_RS08375 PF03483 B3/4 domain YPD4_RS08375 PF03484 tRNA synthetase B5 domain YPD4_RS08380 PF00216 Bacterial DNA-binding protein YPD4_RS08390 PF01032 FecCD transport family YPD4_RS08395 PF00255 Glutathione peroxidase YPD4_RS08400 PF00005 ABC transporter YPD4_RS08410 PF00535 Glycosyl transferase family 2 YPD4_RS08415 PF01370 NAD dependent epimerase/dehydratase family YPD4_RS08415 PF00551 Formyl transferase YPD4_RS08415 PF02911 Formyl transferase, C-terminal domain YPD4_RS08420 PF01522 Polysaccharide deacetylase YPD4_RS08425 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPD4_RS08430 PF00892 EamA-like transporter family YPD4_RS08440 PF00877 NlpC/P60 family YPD4_RS08445 PF03099 Biotin/lipoate A/B protein ligase family YPD4_RS08445 PF10437 Bacterial lipoate protein ligase C-terminus YPD4_RS08455 PF00793 DAHP synthetase I family YPD4_RS08460 PF03618 Kinase/pyrophosphorylase YPD4_RS08465 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPD4_RS08465 PF02896 PEP-utilising enzyme, TIM barrel domain YPD4_RS08465 PF00391 PEP-utilising enzyme, mobile domain YPD4_RS08470 PF01594 AI-2E family transporter YPD4_RS08475 PF01565 FAD binding domain YPD4_RS08475 PF02913 FAD linked oxidases, C-terminal domain YPD4_RS08475 PF13183 4Fe-4S dicluster domain YPD4_RS08480 PF03061 Thioesterase superfamily YPD4_RS08490 PF01521 Iron-sulphur cluster biosynthesis YPD4_RS08495 PF01458 Uncharacterized protein family (UPF0051) YPD4_RS08500 PF00005 ABC transporter YPD4_RS08505 PF01458 Uncharacterized protein family (UPF0051) YPD4_RS08510 PF00266 Aminotransferase class-V YPD4_RS08515 PF02657 Fe-S metabolism associated domain YPD4_RS08520 PF03734 L,D-transpeptidase catalytic domain YPD4_RS08520 PF17969 L,D-transpeptidase C-terminal domain YPD4_RS08520 PF01476 LysM domain YPD4_RS08525 PF01695 IstB-like ATP binding protein YPD4_RS08530 PF02796 Helix-turn-helix domain of resolvase YPD4_RS08530 PF00665 Integrase core domain YPD4_RS08545 PF04728 Lipoprotein leucine-zipper YPD4_RS08550 PF02887 Pyruvate kinase, alpha/beta domain YPD4_RS08550 PF00224 Pyruvate kinase, barrel domain YPD4_RS08570 PF00677 Lumazine binding domain YPD4_RS08580 PF07690 Major Facilitator Superfamily YPD4_RS08585 PF03466 LysR substrate binding domain YPD4_RS08585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS08590 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS08595 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPD4_RS08595 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPD4_RS08600 PF00877 NlpC/P60 family YPD4_RS08610 PF00462 Glutaredoxin YPD4_RS08615 PF00929 Exonuclease YPD4_RS08620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPD4_RS08625 PF18807 Tripartite Tc toxins repeat YPD4_RS08625 PF14431 YwqJ-like deaminase YPD4_RS08630 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPD4_RS08635 PF00440 Bacterial regulatory proteins, tetR family YPD4_RS08635 PF16925 Tetracyclin repressor-like, C-terminal domain YPD4_RS08640 PF00884 Sulfatase YPD4_RS08640 PF08019 Phosphoethanolamine transferase EptA/EptB YPD4_RS08645 PF06945 Protein of unknown function (DUF1289) YPD4_RS08650 PF00248 Aldo/keto reductase family YPD4_RS08655 PF01047 MarR family YPD4_RS08660 PF05433 Glycine zipper 2TM domain YPD4_RS08665 PF03702 Anhydro-N-acetylmuramic acid kinase YPD4_RS08670 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPD4_RS08675 PF01243 Pyridoxamine 5'-phosphate oxidase YPD4_RS08675 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPD4_RS08680 PF00579 tRNA synthetases class I (W and Y) YPD4_RS08680 PF01479 S4 domain YPD4_RS08685 PF08543 Phosphomethylpyrimidine kinase YPD4_RS08690 PF00043 Glutathione S-transferase, C-terminal domain YPD4_RS08690 PF02798 Glutathione S-transferase, N-terminal domain YPD4_RS08695 PF11656 YjbD family (DUF3811) YPD4_RS08700 PF04893 Yip1 domain YPD4_RS08705 PF00854 POT family YPD4_RS08715 PF00005 ABC transporter YPD4_RS08720 PF00005 ABC transporter YPD4_RS08720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_RS08725 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS08725 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_RS08730 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS08735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_RS08755 PF00158 Sigma-54 interaction domain YPD4_RS08755 PF02954 Bacterial regulatory protein, Fis family YPD4_RS08760 PF04012 PspA/IM30 family YPD4_RS08765 PF06667 Phage shock protein B YPD4_RS08770 PF04024 PspC domain YPD4_RS08785 PF05128 Domain of unknown function (DUF697) YPD4_RS08790 PF08808 RES domain YPD4_RS08795 PF09722 Protein of unknown function (DUF2384) YPD4_RS08800 PF18024 Helix-turn-helix domain YPD4_RS08800 PF00158 Sigma-54 interaction domain YPD4_RS08805 PF01797 Transposase IS200 like YPD4_RS08810 PF08534 Redoxin YPD4_RS08815 PF01695 IstB-like ATP binding protein YPD4_RS08820 PF00665 Integrase core domain YPD4_RS08820 PF02796 Helix-turn-helix domain of resolvase YPD4_RS08830 PF07351 Protein of unknown function (DUF1480) YPD4_RS08845 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_RS08845 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS08865 PF02470 MlaD protein YPD4_RS08870 PF04403 Paraquat-inducible protein A YPD4_RS08875 PF13185 GAF domain YPD4_RS08880 PF04352 ProQ/FINO family YPD4_RS08880 PF17516 ProQ C-terminal domain YPD4_RS08885 PF11818 C-terminal domain of tail specific protease (DUF3340) YPD4_RS08885 PF00595 PDZ domain YPD4_RS08885 PF03572 Peptidase family S41 YPD4_RS08885 PF17804 Tail specific protease N-terminal domain YPD4_RS08890 PF01435 Peptidase family M48 YPD4_RS08895 PF00419 Fimbrial protein YPD4_RS08900 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_RS08900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS08905 PF00577 Outer membrane usher protein YPD4_RS08905 PF13954 PapC N-terminal domain YPD4_RS08905 PF13953 PapC C-terminal domain YPD4_RS08915 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_RS08915 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS08925 PF14583 Oligogalacturonate lyase YPD4_RS08930 PF09339 IclR helix-turn-helix domain YPD4_RS08930 PF01614 Bacterial transcriptional regulator YPD4_RS08935 PF01510 N-acetylmuramoyl-L-alanine amidase YPD4_RS08940 PF00375 Sodium:dicarboxylate symporter family YPD4_RS08945 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPD4_RS08950 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPD4_RS08955 PF01547 Bacterial extracellular solute-binding protein YPD4_RS08960 PF03459 TOBE domain YPD4_RS08960 PF00005 ABC transporter YPD4_RS08960 PF17912 MalK OB fold domain YPD4_RS08965 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS08970 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS08975 PF06917 Periplasmic pectate lyase YPD4_RS08985 PF04962 KduI/IolB family YPD4_RS08990 PF07883 Cupin domain YPD4_RS08995 PF00872 Transposase, Mutator family YPD4_RS09000 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS09000 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_RS09005 PF02796 Helix-turn-helix domain of resolvase YPD4_RS09005 PF00665 Integrase core domain YPD4_RS09010 PF01695 IstB-like ATP binding protein YPD4_RS09015 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_RS09015 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS09025 PF06167 Glucose-regulated metallo-peptidase M90 YPD4_RS09040 PF00664 ABC transporter transmembrane region YPD4_RS09040 PF00005 ABC transporter YPD4_RS09050 PF12833 Helix-turn-helix domain YPD4_RS09060 PF10964 Protein of unknown function (DUF2766) YPD4_RS09065 PF13996 YobH-like protein YPD4_RS09070 PF13974 YebO-like protein YPD4_RS09090 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPD4_RS09100 PF10736 Protein of unknown function (DUF2627) YPD4_RS09105 PF00313 'Cold-shock' DNA-binding domain YPD4_RS09110 PF02578 Multi-copper polyphenol oxidoreductase laccase YPD4_RS09115 PF13847 Methyltransferase domain YPD4_RS09125 PF00563 EAL domain YPD4_RS09125 PF05231 MASE1 YPD4_RS09125 PF00990 Diguanylate cyclase, GGDEF domain YPD4_RS09125 PF08447 PAS fold YPD4_RS09125 PF13426 PAS domain YPD4_RS09125 PF08448 PAS fold YPD4_RS09130 PF07715 TonB-dependent Receptor Plug Domain YPD4_RS09130 PF00593 TonB dependent receptor YPD4_RS09135 PF02659 Putative manganese efflux pump YPD4_RS09140 PF06173 Protein of unknown function (DUF986) YPD4_RS09145 PF03613 PTS system mannose/fructose/sorbose family IID component YPD4_RS09150 PF03609 PTS system sorbose-specific iic component YPD4_RS09155 PF03610 PTS system fructose IIA component YPD4_RS09155 PF03830 PTS system sorbose subfamily IIB component YPD4_RS09160 PF03471 Transporter associated domain YPD4_RS09160 PF03741 Integral membrane protein TerC family YPD4_RS09165 PF01047 MarR family YPD4_RS09170 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD4_RS09175 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD4_RS09180 PF00171 Aldehyde dehydrogenase family YPD4_RS09185 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPD4_RS09190 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPD4_RS09195 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD4_RS09200 PF03328 HpcH/HpaI aldolase/citrate lyase family YPD4_RS09205 PF07690 Major Facilitator Superfamily YPD4_RS09210 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPD4_RS09210 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPD4_RS09215 PF01613 Flavin reductase like domain YPD4_RS09220 PF03313 Serine dehydratase alpha chain YPD4_RS09220 PF03315 Serine dehydratase beta chain YPD4_RS09225 PF00293 NUDIX domain YPD4_RS09230 PF00425 chorismate binding enzyme YPD4_RS09230 PF04715 Anthranilate synthase component I, N terminal region YPD4_RS09235 PF03701 Uncharacterised protein family (UPF0181) YPD4_RS09240 PF02222 ATP-grasp domain YPD4_RS09245 PF03880 DbpA RNA binding domain YPD4_RS09245 PF00270 DEAD/DEAH box helicase YPD4_RS09245 PF00271 Helicase conserved C-terminal domain YPD4_RS09250 PF07130 YebG protein YPD4_RS09255 PF04266 ASCH domain YPD4_RS09260 PF13995 YebF-like protein YPD4_RS09265 PF00326 Prolyl oligopeptidase family YPD4_RS09265 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPD4_RS09270 PF00561 alpha/beta hydrolase fold YPD4_RS09275 PF06440 DNA polymerase III, theta subunit YPD4_RS09280 PF00210 Ferritin-like domain YPD4_RS09285 PF04234 CopC domain YPD4_RS09295 PF10709 Protein of unknown function (DUF2511) YPD4_RS09315 PF01312 FlhB HrpN YscU SpaS Family YPD4_RS09320 PF00771 FHIPEP family YPD4_RS09325 PF06366 Flagellar protein FlhE YPD4_RS09330 PF09134 Invasin, domain 3 YPD4_RS09330 PF07979 Intimin C-type lectin domain YPD4_RS09330 PF11924 Inverse autotransporter, beta-domain YPD4_RS09330 PF02369 Bacterial Ig-like domain (group 1) YPD4_RS09340 PF09134 Invasin, domain 3 YPD4_RS09340 PF11924 Inverse autotransporter, beta-domain YPD4_RS09340 PF02369 Bacterial Ig-like domain (group 1) YPD4_RS09340 PF07979 Intimin C-type lectin domain YPD4_RS09345 PF05130 FlgN protein YPD4_RS09350 PF04316 Anti-sigma-28 factor, FlgM YPD4_RS09355 PF13144 Chaperone for flagella basal body P-ring formation YPD4_RS09355 PF17656 FlgA N-terminal domain YPD4_RS09360 PF00460 Flagella basal body rod protein YPD4_RS09365 PF00460 Flagella basal body rod protein YPD4_RS09365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_RS09370 PF03963 Flagellar hook capping protein - N-terminal region YPD4_RS09370 PF13861 FlgD Tudor-like domain YPD4_RS09370 PF13860 FlgD Ig-like domain YPD4_RS09375 PF07559 Flagellar basal body protein FlaE YPD4_RS09375 PF00460 Flagella basal body rod protein YPD4_RS09375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_RS09380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_RS09380 PF00460 Flagella basal body rod protein YPD4_RS09390 PF02107 Flagellar L-ring protein YPD4_RS09395 PF02119 Flagellar P-ring protein YPD4_RS09400 PF10135 Rod binding protein YPD4_RS09400 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPD4_RS09405 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPD4_RS09405 PF00460 Flagella basal body rod protein YPD4_RS09410 PF00669 Bacterial flagellin N-terminal helical region YPD4_RS09415 PF04198 Putative sugar-binding domain YPD4_RS09420 PF00596 Class II Aldolase and Adducin N-terminal domain YPD4_RS09425 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS09430 PF13407 Periplasmic binding protein domain YPD4_RS09435 PF00005 ABC transporter YPD4_RS09440 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS09445 PF00294 pfkB family carbohydrate kinase YPD4_RS09460 PF01311 Bacterial export proteins, family 1 YPD4_RS09465 PF01313 Bacterial export proteins, family 3 YPD4_RS09470 PF00813 FliP family YPD4_RS09475 PF04347 Flagellar biosynthesis protein, FliO YPD4_RS09480 PF16973 Flagellar motor switch protein FliN N-terminal YPD4_RS09480 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD4_RS09485 PF02154 Flagellar motor switch protein FliM YPD4_RS09485 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPD4_RS09490 PF03748 Flagellar basal body-associated protein FliL YPD4_RS09495 PF02120 Flagellar hook-length control protein FliK YPD4_RS09500 PF02050 Flagellar FliJ protein YPD4_RS09510 PF02108 Flagellar assembly protein FliH YPD4_RS09515 PF01706 FliG C-terminal domain YPD4_RS09515 PF14841 FliG middle domain YPD4_RS09515 PF14842 FliG N-terminal domain YPD4_RS09520 PF08345 Flagellar M-ring protein C-terminal YPD4_RS09520 PF01514 Secretory protein of YscJ/FliF family YPD4_RS09525 PF02049 Flagellar hook-basal body complex protein FliE YPD4_RS09540 PF00730 HhH-GPD superfamily base excision DNA repair protein YPD4_RS09545 PF01966 HD domain YPD4_RS09550 PF02743 Cache domain YPD4_RS09550 PF00672 HAMP domain YPD4_RS09550 PF00211 Adenylate and Guanylate cyclase catalytic domain YPD4_RS09555 PF12833 Helix-turn-helix domain YPD4_RS09565 PF05400 Flagellar protein FliT YPD4_RS09570 PF02561 Flagellar protein FliS YPD4_RS09575 PF07196 Flagellin hook IN motif YPD4_RS09575 PF07195 Flagellar hook-associated protein 2 C-terminus YPD4_RS09575 PF02465 Flagellar hook-associated protein 2 N-terminus YPD4_RS09580 PF00700 Bacterial flagellin C-terminal helical region YPD4_RS09580 PF08884 Flagellin D3 domain YPD4_RS09580 PF00669 Bacterial flagellin N-terminal helical region YPD4_RS09585 PF04539 Sigma-70 region 3 YPD4_RS09585 PF04542 Sigma-70 region 2 YPD4_RS09585 PF04545 Sigma-70, region 4 YPD4_RS09590 PF02899 Phage integrase, N-terminal SAM-like domain YPD4_RS09595 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_RS09600 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_RS09605 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS09610 PF00005 ABC transporter YPD4_RS09625 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPD4_RS09625 PF14850 DNA-binding domain of Proline dehydrogenase YPD4_RS09625 PF01619 Proline dehydrogenase YPD4_RS09625 PF00171 Aldehyde dehydrogenase family YPD4_RS09635 PF00474 Sodium:solute symporter family YPD4_RS09640 PF03239 Iron permease FTR1 family YPD4_RS09645 PF13473 Cupredoxin-like domain YPD4_RS09645 PF09375 Imelysin YPD4_RS09650 PF04261 Dyp-type peroxidase family YPD4_RS09655 PF03358 NADPH-dependent FMN reductase YPD4_RS09660 PF01344 Kelch motif YPD4_RS09665 PF00324 Amino acid permease YPD4_RS09675 PF13505 Outer membrane protein beta-barrel domain YPD4_RS09690 PF06942 GlpM protein YPD4_RS09695 PF10769 Protein of unknown function (DUF2594) YPD4_RS09700 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS09700 PF00072 Response regulator receiver domain YPD4_RS09705 PF01541 GIY-YIG catalytic domain YPD4_RS09705 PF02151 UvrB/uvrC motif YPD4_RS09705 PF08459 UvrC Helix-hairpin-helix N-terminal YPD4_RS09710 PF01066 CDP-alcohol phosphatidyltransferase YPD4_RS09755 PF05638 Type VI secretion system effector, Hcp YPD4_RS09840 PF07702 UTRA domain YPD4_RS09840 PF00392 Bacterial regulatory proteins, gntR family YPD4_RS09845 PF00480 ROK family YPD4_RS09850 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD4_RS09850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_RS09860 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS09865 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS09870 PF00005 ABC transporter YPD4_RS09870 PF08402 TOBE domain YPD4_RS09900 PF00665 Integrase core domain YPD4_RS09900 PF02796 Helix-turn-helix domain of resolvase YPD4_RS09905 PF01695 IstB-like ATP binding protein YPD4_RS09945 PF07715 TonB-dependent Receptor Plug Domain YPD4_RS09945 PF00593 TonB dependent receptor YPD4_RS09950 PF13193 AMP-binding enzyme C-terminal domain YPD4_RS09950 PF00501 AMP-binding enzyme YPD4_RS09955 PF00975 Thioesterase domain YPD4_RS09965 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_RS09965 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_RS09965 PF16197 Ketoacyl-synthetase C-terminal extension YPD4_RS09965 PF00668 Condensation domain YPD4_RS09965 PF00550 Phosphopantetheine attachment site YPD4_RS09965 PF00698 Acyl transferase domain YPD4_RS09970 PF08242 Methyltransferase domain YPD4_RS09970 PF00550 Phosphopantetheine attachment site YPD4_RS09970 PF00668 Condensation domain YPD4_RS09970 PF00501 AMP-binding enzyme YPD4_RS09980 PF04954 Siderophore-interacting protein YPD4_RS09980 PF08021 Siderophore-interacting FAD-binding domain YPD4_RS09980 PF00005 ABC transporter YPD4_RS09980 PF00664 ABC transporter transmembrane region YPD4_RS09985 PF00005 ABC transporter YPD4_RS09985 PF00664 ABC transporter transmembrane region YPD4_RS09990 PF07690 Major Facilitator Superfamily YPD4_RS09995 PF00425 chorismate binding enzyme YPD4_RS10000 PF00589 Phage integrase family YPD4_RS10000 PF13356 Arm DNA-binding domain YPD4_RS10010 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_RS10010 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS10020 PF00577 Outer membrane usher protein YPD4_RS10020 PF13954 PapC N-terminal domain YPD4_RS10020 PF13953 PapC C-terminal domain YPD4_RS10025 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS10025 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_RS10035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS10035 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_RS10035 PF01627 Hpt domain YPD4_RS10035 PF00072 Response regulator receiver domain YPD4_RS10035 PF00989 PAS fold YPD4_RS10035 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS10040 PF00072 Response regulator receiver domain YPD4_RS10040 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS10045 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YPD4_RS10045 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YPD4_RS10050 PF01575 MaoC like domain YPD4_RS10055 PF03328 HpcH/HpaI aldolase/citrate lyase family YPD4_RS10060 PF03466 LysR substrate binding domain YPD4_RS10060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS10075 PF07690 Major Facilitator Superfamily YPD4_RS10080 PF04909 Amidohydrolase YPD4_RS10090 PF02508 Rnf-Nqr subunit, membrane protein YPD4_RS10095 PF00155 Aminotransferase class I and II YPD4_RS10100 PF00324 Amino acid permease YPD4_RS10105 PF00455 DeoR C terminal sensor domain YPD4_RS10105 PF08220 DeoR-like helix-turn-helix domain YPD4_RS10115 PF04960 Glutaminase YPD4_RS10125 PF03239 Iron permease FTR1 family YPD4_RS10130 PF10634 Fe2+ transport protein YPD4_RS10140 PF12704 MacB-like periplasmic core domain YPD4_RS10140 PF02687 FtsX-like permease family YPD4_RS10140 PF00005 ABC transporter YPD4_RS10150 PF00005 ABC transporter YPD4_RS10150 PF12704 MacB-like periplasmic core domain YPD4_RS10150 PF02687 FtsX-like permease family YPD4_RS10155 PF00578 AhpC/TSA family YPD4_RS10165 PF09313 Domain of unknown function (DUF1971) YPD4_RS10165 PF03848 Tellurite resistance protein TehB YPD4_RS10170 PF00557 Metallopeptidase family M24 YPD4_RS10180 PF14883 Hypothetical glycosyl hydrolase family 13 YPD4_RS10180 PF01522 Polysaccharide deacetylase YPD4_RS10185 PF00535 Glycosyl transferase family 2 YPD4_RS10190 PF13994 PgaD-like protein YPD4_RS10205 PF02562 PhoH-like protein YPD4_RS10210 PF01699 Sodium/calcium exchanger protein YPD4_RS10215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS10215 PF00672 HAMP domain YPD4_RS10215 PF07730 Histidine kinase YPD4_RS10215 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YPD4_RS10220 PF00155 Aminotransferase class I and II YPD4_RS10220 PF00392 Bacterial regulatory proteins, gntR family YPD4_RS10230 PF00202 Aminotransferase class-III YPD4_RS10235 PF04958 Arginine N-succinyltransferase beta subunit YPD4_RS10240 PF00171 Aldehyde dehydrogenase family YPD4_RS10245 PF04996 Succinylarginine dihydrolase YPD4_RS10250 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YPD4_RS10255 PF00267 Gram-negative porin YPD4_RS10265 PF01695 IstB-like ATP binding protein YPD4_RS10275 PF01979 Amidohydrolase family YPD4_RS10280 PF00392 Bacterial regulatory proteins, gntR family YPD4_RS10280 PF07702 UTRA domain YPD4_RS10285 PF01979 Amidohydrolase family YPD4_RS10290 PF05962 HutD YPD4_RS10300 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPD4_RS10300 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPD4_RS10305 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPD4_RS10305 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPD4_RS10310 PF01370 NAD dependent epimerase/dehydratase family YPD4_RS10355 PF00872 Transposase, Mutator family YPD4_RS10380 PF08242 Methyltransferase domain YPD4_RS10420 PF00672 HAMP domain YPD4_RS10420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS10420 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS10425 PF00072 Response regulator receiver domain YPD4_RS10425 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS10430 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPD4_RS10475 PF06071 Protein of unknown function (DUF933) YPD4_RS10475 PF01926 50S ribosome-binding GTPase YPD4_RS10485 PF10762 Protein of unknown function (DUF2583) YPD4_RS10495 PF14572 Phosphoribosyl synthetase-associated domain YPD4_RS10495 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPD4_RS10505 PF00288 GHMP kinases N terminal domain YPD4_RS10505 PF08544 GHMP kinases C terminal YPD4_RS10510 PF03550 Outer membrane lipoprotein LolB YPD4_RS10515 PF01488 Shikimate / quinate 5-dehydrogenase YPD4_RS10515 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPD4_RS10515 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPD4_RS10520 PF00472 RF-1 domain YPD4_RS10520 PF03462 PCRF domain YPD4_RS10525 PF17827 PrmC N-terminal domain YPD4_RS10525 PF13847 Methyltransferase domain YPD4_RS10530 PF04247 Invasion gene expression up-regulator, SirB YPD4_RS10535 PF13369 Transglutaminase-like superfamily YPD4_RS10540 PF00793 DAHP synthetase I family YPD4_RS10560 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD4_RS10570 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS10575 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS10580 PF08402 TOBE domain YPD4_RS10580 PF00005 ABC transporter YPD4_RS10590 PF08402 TOBE domain YPD4_RS10590 PF00005 ABC transporter YPD4_RS10595 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD4_RS10600 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPD4_RS10600 PF00480 ROK family YPD4_RS10610 PF02811 PHP domain YPD4_RS10615 PF02613 Nitrate reductase delta subunit YPD4_RS10620 PF07273 Protein of unknown function (DUF1439) YPD4_RS10625 PF07690 Major Facilitator Superfamily YPD4_RS10630 PF13302 Acetyltransferase (GNAT) domain YPD4_RS10635 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_RS10640 PF03023 Lipid II flippase MurJ YPD4_RS10650 PF13332 Hemagglutinin repeat YPD4_RS10650 PF05860 haemagglutination activity domain YPD4_RS10655 PF03485 Arginyl tRNA synthetase N terminal domain YPD4_RS10655 PF05746 DALR anticodon binding domain YPD4_RS10655 PF00750 tRNA synthetases class I (R) YPD4_RS10660 PF06185 YecM protein YPD4_RS10665 PF03932 CutC family YPD4_RS10670 PF08003 Protein of unknown function (DUF1698) YPD4_RS10675 PF13649 Methyltransferase domain YPD4_RS10680 PF01124 MAPEG family YPD4_RS10685 PF01904 Protein of unknown function DUF72 YPD4_RS10690 PF01336 OB-fold nucleic acid binding domain YPD4_RS10690 PF00152 tRNA synthetases class II (D, K and N) YPD4_RS10690 PF02938 GAD domain YPD4_RS10695 PF00293 NUDIX domain YPD4_RS10700 PF01709 Transcriptional regulator YPD4_RS10705 PF02075 Crossover junction endodeoxyribonuclease RuvC YPD4_RS10710 PF07499 RuvA, C-terminal domain YPD4_RS10710 PF01330 RuvA N terminal domain YPD4_RS10715 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPD4_RS10715 PF05491 RuvB C-terminal winged helix domain YPD4_RS10715 PF17864 RuvB AAA lid domain YPD4_RS10720 PF00950 ABC 3 transport family YPD4_RS10725 PF00005 ABC transporter YPD4_RS10730 PF01297 Zinc-uptake complex component A periplasmic YPD4_RS10740 PF03279 Bacterial lipid A biosynthesis acyltransferase YPD4_RS10745 PF00224 Pyruvate kinase, barrel domain YPD4_RS10745 PF02887 Pyruvate kinase, alpha/beta domain YPD4_RS10750 PF01418 Helix-turn-helix domain, rpiR family YPD4_RS10750 PF01380 SIS domain YPD4_RS10755 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPD4_RS10755 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPD4_RS10765 PF01081 KDPG and KHG aldolase YPD4_RS10770 PF00893 Small Multidrug Resistance protein YPD4_RS10775 PF00893 Small Multidrug Resistance protein YPD4_RS10780 PF01042 Endoribonuclease L-PSP YPD4_RS10785 PF04851 Type III restriction enzyme, res subunit YPD4_RS10785 PF13307 Helicase C-terminal domain YPD4_RS10790 PF00814 Glycoprotease family YPD4_RS10795 PF03843 Outer membrane lipoprotein Slp family YPD4_RS10800 PF13193 AMP-binding enzyme C-terminal domain YPD4_RS10800 PF00501 AMP-binding enzyme YPD4_RS10805 PF01612 3'-5' exonuclease YPD4_RS10805 PF00570 HRDC domain YPD4_RS10810 PF03776 Septum formation topological specificity factor MinE YPD4_RS10815 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPD4_RS10820 PF05209 Septum formation inhibitor MinC, N-terminal domain YPD4_RS10820 PF03775 Septum formation inhibitor MinC, C-terminal domain YPD4_RS10830 PF13406 Transglycosylase SLT domain YPD4_RS10835 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPD4_RS10840 PF03692 Putative zinc- or iron-chelating domain YPD4_RS10845 PF12167 Arm DNA-binding domain YPD4_RS10845 PF00589 Phage integrase family YPD4_RS10850 PF02796 Helix-turn-helix domain of resolvase YPD4_RS10850 PF00665 Integrase core domain YPD4_RS10855 PF01695 IstB-like ATP binding protein YPD4_RS10870 PF05772 NinB protein YPD4_RS10880 PF06530 Phage antitermination protein Q YPD4_RS10945 PF00872 Transposase, Mutator family YPD4_RS11110 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPD4_RS11120 PF00872 Transposase, Mutator family YPD4_RS11130 PF00266 Aminotransferase class-V YPD4_RS11145 PF02600 Disulfide bond formation protein DsbB YPD4_RS11150 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPD4_RS11155 PF00392 Bacterial regulatory proteins, gntR family YPD4_RS11155 PF07840 FadR C-terminal domain YPD4_RS11160 PF04293 SpoVR like protein YPD4_RS11165 PF01266 FAD dependent oxidoreductase YPD4_RS11170 PF07690 Major Facilitator Superfamily YPD4_RS11175 PF02678 Pirin YPD4_RS11175 PF05726 Pirin C-terminal cupin domain YPD4_RS11180 PF03466 LysR substrate binding domain YPD4_RS11180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS11190 PF04285 Protein of unknown function (DUF444) YPD4_RS11195 PF06798 PrkA serine protein kinase C-terminal domain YPD4_RS11195 PF08298 PrkA AAA domain YPD4_RS11200 PF06629 MltA-interacting protein MipA YPD4_RS11210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPD4_RS11210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPD4_RS11215 PF01641 SelR domain YPD4_RS11220 PF07023 Protein of unknown function (DUF1315) YPD4_RS11225 PF00857 Isochorismatase family YPD4_RS11230 PF00710 Asparaginase, N-terminal YPD4_RS11230 PF17763 Glutaminase/Asparaginase C-terminal domain YPD4_RS11240 PF00881 Nitroreductase family YPD4_RS11245 PF00586 AIR synthase related protein, N-terminal domain YPD4_RS11245 PF02769 AIR synthase related protein, C-terminal domain YPD4_RS11250 PF01131 DNA topoisomerase YPD4_RS11250 PF01751 Toprim domain YPD4_RS11255 PF07383 Protein of unknown function (DUF1496) YPD4_RS11260 PF00293 NUDIX domain YPD4_RS11265 PF03372 Endonuclease/Exonuclease/phosphatase family YPD4_RS11270 PF03466 LysR substrate binding domain YPD4_RS11270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS11280 PF00872 Transposase, Mutator family YPD4_RS11285 PF00551 Formyl transferase YPD4_RS11285 PF01842 ACT domain YPD4_RS11290 PF02810 SEC-C motif YPD4_RS11295 PF00072 Response regulator receiver domain YPD4_RS11300 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPD4_RS11300 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPD4_RS11300 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPD4_RS11305 PF00816 H-NS histone family YPD4_RS11310 PF00265 Thymidine kinase YPD4_RS11315 PF01695 IstB-like ATP binding protein YPD4_RS11320 PF00665 Integrase core domain YPD4_RS11320 PF02796 Helix-turn-helix domain of resolvase YPD4_RS11330 PF01914 MarC family integral membrane protein YPD4_RS11335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_RS11340 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS11345 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS11345 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_RS11350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_RS11350 PF00005 ABC transporter YPD4_RS11355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_RS11355 PF00005 ABC transporter YPD4_RS11370 PF04269 Protein of unknown function, DUF440 YPD4_RS11375 PF13091 PLD-like domain YPD4_RS11375 PF13396 Phospholipase_D-nuclease N-terminal YPD4_RS11380 PF13505 Outer membrane protein beta-barrel domain YPD4_RS11395 PF03795 YCII-related domain YPD4_RS11400 PF03544 Gram-negative bacterial TonB protein C-terminal YPD4_RS11405 PF00872 Transposase, Mutator family YPD4_RS11410 PF03061 Thioesterase superfamily YPD4_RS11415 PF04279 Intracellular septation protein A YPD4_RS11445 PF03922 OmpW family YPD4_RS11455 PF00290 Tryptophan synthase alpha chain YPD4_RS11460 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_RS11465 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPD4_RS11465 PF00218 Indole-3-glycerol phosphate synthase YPD4_RS11470 PF02885 Glycosyl transferase family, helical bundle domain YPD4_RS11470 PF00591 Glycosyl transferase family, a/b domain YPD4_RS11475 PF00117 Glutamine amidotransferase class-I YPD4_RS11480 PF00425 chorismate binding enzyme YPD4_RS11480 PF04715 Anthranilate synthase component I, N terminal region YPD4_RS11495 PF02811 PHP domain YPD4_RS11500 PF01300 Telomere recombination YPD4_RS11505 PF00849 RNA pseudouridylate synthase YPD4_RS11505 PF01479 S4 domain YPD4_RS11510 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPD4_RS11515 PF00106 short chain dehydrogenase YPD4_RS11520 PF01343 Peptidase family S49 YPD4_RS11520 PF08496 Peptidase family S49 N-terminal YPD4_RS11525 PF10692 Protein of unknown function (DUF2498) YPD4_RS11535 PF08272 Topoisomerase I zinc-ribbon-like YPD4_RS11535 PF01396 Topoisomerase DNA binding C4 zinc finger YPD4_RS11535 PF01751 Toprim domain YPD4_RS11535 PF01131 DNA topoisomerase YPD4_RS11540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS11540 PF03466 LysR substrate binding domain YPD4_RS11550 PF00330 Aconitase family (aconitate hydratase) YPD4_RS11550 PF00694 Aconitase C-terminal domain YPD4_RS11555 PF00925 GTP cyclohydrolase II YPD4_RS11560 PF01569 PAP2 superfamily YPD4_RS11565 PF06305 Lipopolysaccharide assembly protein A domain YPD4_RS11580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPD4_RS11585 PF01253 Translation initiation factor SUI1 YPD4_RS11590 PF05433 Glycine zipper 2TM domain YPD4_RS11595 PF00596 Class II Aldolase and Adducin N-terminal domain YPD4_RS11605 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPD4_RS11610 PF04328 Selenoprotein, putative YPD4_RS11615 PF13722 5TM C-terminal transporter carbon starvation CstA YPD4_RS11615 PF02554 Carbon starvation protein CstA YPD4_RS11620 PF17876 Cold shock domain YPD4_RS11620 PF00575 S1 RNA binding domain YPD4_RS11620 PF00773 RNB domain YPD4_RS11620 PF08206 Ribonuclease B OB domain YPD4_RS11625 PF07690 Major Facilitator Superfamily YPD4_RS11630 PF01370 NAD dependent epimerase/dehydratase family YPD4_RS11635 PF00633 Helix-hairpin-helix motif YPD4_RS11635 PF10576 Iron-sulfur binding domain of endonuclease III YPD4_RS11635 PF00730 HhH-GPD superfamily base excision DNA repair protein YPD4_RS11640 PF02508 Rnf-Nqr subunit, membrane protein YPD4_RS11645 PF04205 FMN-binding domain YPD4_RS11650 PF03116 NQR2, RnfD, RnfE family YPD4_RS11655 PF12833 Helix-turn-helix domain YPD4_RS11655 PF06445 GyrI-like small molecule binding domain YPD4_RS11660 PF13375 RnfC Barrel sandwich hybrid domain YPD4_RS11660 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPD4_RS11660 PF13237 4Fe-4S dicluster domain YPD4_RS11660 PF10531 SLBB domain YPD4_RS11665 PF04060 Putative Fe-S cluster YPD4_RS11670 PF02508 Rnf-Nqr subunit, membrane protein YPD4_RS11675 PF10754 Protein of unknown function (DUF2569) YPD4_RS11680 PF00005 ABC transporter YPD4_RS11680 PF00664 ABC transporter transmembrane region YPD4_RS11680 PF03412 Peptidase C39 family YPD4_RS11685 PF00664 ABC transporter transmembrane region YPD4_RS11685 PF00005 ABC transporter YPD4_RS11690 PF13533 Biotin-lipoyl like YPD4_RS11700 PF00664 ABC transporter transmembrane region YPD4_RS11700 PF00005 ABC transporter YPD4_RS11700 PF03412 Peptidase C39 family YPD4_RS11705 PF11762 L-arabinose isomerase C-terminal domain YPD4_RS11705 PF02610 L-arabinose isomerase YPD4_RS11710 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_RS11715 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_RS11720 PF00005 ABC transporter YPD4_RS11725 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS11730 PF12833 Helix-turn-helix domain YPD4_RS11730 PF02311 AraC-like ligand binding domain YPD4_RS11735 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD4_RS11735 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_RS11750 PF06097 Bacterial protein of unknown function (DUF945) YPD4_RS11755 PF01238 Phosphomannose isomerase type I YPD4_RS11760 PF00206 Lyase YPD4_RS11760 PF10415 Fumarase C C-terminus YPD4_RS11765 PF05472 DNA replication terminus site-binding protein (Ter protein) YPD4_RS11775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS11775 PF03466 LysR substrate binding domain YPD4_RS11780 PF00480 ROK family YPD4_RS11790 PF00654 Voltage gated chloride channel YPD4_RS11800 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS11810 PF13407 Periplasmic binding protein domain YPD4_RS11815 PF09084 NMT1/THI5 like YPD4_RS11820 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS11825 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPD4_RS11825 PF01048 Phosphorylase superfamily YPD4_RS11850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_RS11850 PF00205 Thiamine pyrophosphate enzyme, central domain YPD4_RS11850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_RS11855 PF01842 ACT domain YPD4_RS11860 PF13419 Haloacid dehalogenase-like hydrolase YPD4_RS11875 PF00245 Alkaline phosphatase YPD4_RS11880 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPD4_RS11880 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPD4_RS11885 PF13545 Crp-like helix-turn-helix domain YPD4_RS11885 PF00027 Cyclic nucleotide-binding domain YPD4_RS11890 PF00582 Universal stress protein family YPD4_RS11895 PF02233 NAD(P) transhydrogenase beta subunit YPD4_RS11900 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPD4_RS11900 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPD4_RS11900 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPD4_RS11910 PF07338 Protein of unknown function (DUF1471) YPD4_RS11915 PF13520 Amino acid permease YPD4_RS11925 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS11925 PF00072 Response regulator receiver domain YPD4_RS11930 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS11930 PF00672 HAMP domain YPD4_RS11930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS11935 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPD4_RS11950 PF18807 Tripartite Tc toxins repeat YPD4_RS11950 PF14431 YwqJ-like deaminase YPD4_RS11965 PF04264 YceI-like domain YPD4_RS11970 PF01292 Prokaryotic cytochrome b561 YPD4_RS11985 PF00089 Trypsin YPD4_RS12000 PF04408 Helicase associated domain (HA2) YPD4_RS12000 PF11898 Domain of unknown function (DUF3418) YPD4_RS12000 PF00270 DEAD/DEAH box helicase YPD4_RS12000 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPD4_RS12000 PF00271 Helicase conserved C-terminal domain YPD4_RS12005 PF02525 Flavodoxin-like fold YPD4_RS12010 PF04198 Putative sugar-binding domain YPD4_RS12010 PF00325 Bacterial regulatory proteins, crp family YPD4_RS12015 PF08125 Mannitol dehydrogenase C-terminal domain YPD4_RS12015 PF01232 Mannitol dehydrogenase Rossmann domain YPD4_RS12020 PF07027 Protein of unknown function (DUF1318) YPD4_RS12025 PF13617 YnbE-like lipoprotein YPD4_RS12030 PF11739 Dicarboxylate transport YPD4_RS12035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_RS12035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_RS12040 PF03724 META domain YPD4_RS12045 PF03891 Domain of unknown function (DUF333) YPD4_RS12050 PF02308 MgtC family YPD4_RS12055 PF00893 Small Multidrug Resistance protein YPD4_RS12060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_RS12060 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPD4_RS12060 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPD4_RS12060 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPD4_RS12060 PF10371 Domain of unknown function YPD4_RS12065 PF01171 PP-loop family YPD4_RS12070 PF07859 alpha/beta hydrolase fold YPD4_RS12080 PF01544 CorA-like Mg2+ transporter protein YPD4_RS12085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_RS12090 PF00246 Zinc carboxypeptidase YPD4_RS12095 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPD4_RS12095 PF13378 Enolase C-terminal domain-like YPD4_RS12100 PF02796 Helix-turn-helix domain of resolvase YPD4_RS12100 PF00665 Integrase core domain YPD4_RS12105 PF01695 IstB-like ATP binding protein YPD4_RS12130 PF01168 Alanine racemase, N-terminal domain YPD4_RS12130 PF00842 Alanine racemase, C-terminal domain YPD4_RS12140 PF03895 YadA-like membrane anchor domain YPD4_RS12140 PF05658 Head domain of trimeric autotransporter adhesin YPD4_RS12140 PF13018 Extended Signal Peptide of Type V secretion system YPD4_RS12140 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_RS12145 PF03895 YadA-like membrane anchor domain YPD4_RS12145 PF05658 Head domain of trimeric autotransporter adhesin YPD4_RS12145 PF13018 Extended Signal Peptide of Type V secretion system YPD4_RS12145 PF05662 Coiled stalk of trimeric autotransporter adhesin YPD4_RS12150 PF01510 N-acetylmuramoyl-L-alanine amidase YPD4_RS12160 PF04344 Chemotaxis phosphatase, CheZ YPD4_RS12165 PF00072 Response regulator receiver domain YPD4_RS12170 PF01339 CheB methylesterase YPD4_RS12170 PF00072 Response regulator receiver domain YPD4_RS12175 PF01739 CheR methyltransferase, SAM binding domain YPD4_RS12175 PF03705 CheR methyltransferase, all-alpha domain YPD4_RS12180 PF00672 HAMP domain YPD4_RS12180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_RS12180 PF02203 Tar ligand binding domain homologue YPD4_RS12185 PF02203 Tar ligand binding domain homologue YPD4_RS12185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_RS12185 PF00672 HAMP domain YPD4_RS12200 PF12951 Passenger-associated-transport-repeat YPD4_RS12205 PF08348 YheO-like PAS domain YPD4_RS12205 PF13309 HTH domain YPD4_RS12215 PF01042 Endoribonuclease L-PSP YPD4_RS12220 PF07690 Major Facilitator Superfamily YPD4_RS12225 PF01584 CheW-like domain YPD4_RS12230 PF02895 Signal transducing histidine kinase, homodimeric domain YPD4_RS12230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS12230 PF01627 Hpt domain YPD4_RS12230 PF01584 CheW-like domain YPD4_RS12230 PF09078 CheY binding YPD4_RS12245 PF01618 MotA/TolQ/ExbB proton channel family YPD4_RS12250 PF05280 Flagellar transcriptional activator (FlhC) YPD4_RS12260 PF00690 Cation transporter/ATPase, N-terminus YPD4_RS12260 PF00689 Cation transporting ATPase, C-terminus YPD4_RS12265 PF02308 MgtC family YPD4_RS12280 PF10781 Dextransucrase DSRB YPD4_RS12285 PF00313 'Cold-shock' DNA-binding domain YPD4_RS12290 PF02929 Beta galactosidase small chain YPD4_RS12290 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPD4_RS12290 PF16353 Domain of unknown function(DUF4981) YPD4_RS12290 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPD4_RS12290 PF00703 Glycosyl hydrolases family 2 YPD4_RS12295 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_RS12295 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_RS12295 PF00107 Zinc-binding dehydrogenase YPD4_RS12295 PF16197 Ketoacyl-synthetase C-terminal extension YPD4_RS12295 PF08659 KR domain YPD4_RS12295 PF00550 Phosphopantetheine attachment site YPD4_RS12295 PF14765 Polyketide synthase dehydratase YPD4_RS12295 PF00698 Acyl transferase domain YPD4_RS12295 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_RS12300 PF10777 Inner membrane protein YlaC YPD4_RS12305 PF13404 AsnC-type helix-turn-helix domain YPD4_RS12305 PF01037 Lrp/AsnC ligand binding domain YPD4_RS12315 PF14001 YdfZ protein YPD4_RS12320 PF00328 Histidine phosphatase superfamily (branch 2) YPD4_RS12330 PF01638 HxlR-like helix-turn-helix YPD4_RS12335 PF05368 NmrA-like family YPD4_RS12340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_RS12340 PF08447 PAS fold YPD4_RS12350 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_RS12350 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS12355 PF00180 Isocitrate/isopropylmalate dehydrogenase YPD4_RS12360 PF00849 RNA pseudouridylate synthase YPD4_RS12365 PF00293 NUDIX domain YPD4_RS12375 PF04356 Protein of unknown function (DUF489) YPD4_RS12380 PF08328 Adenylosuccinate lyase C-terminal YPD4_RS12380 PF00206 Lyase YPD4_RS12390 PF00072 Response regulator receiver domain YPD4_RS12390 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS12395 PF08918 PhoQ Sensor YPD4_RS12395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS12400 PF08007 Cupin superfamily protein YPD4_RS12405 PF07687 Peptidase dimerisation domain YPD4_RS12405 PF01546 Peptidase family M20/M25/M40 YPD4_RS12410 PF02146 Sir2 family YPD4_RS12415 PF00480 ROK family YPD4_RS12420 PF12704 MacB-like periplasmic core domain YPD4_RS12420 PF02687 FtsX-like permease family YPD4_RS12425 PF00005 ABC transporter YPD4_RS12430 PF12704 MacB-like periplasmic core domain YPD4_RS12430 PF02687 FtsX-like permease family YPD4_RS12435 PF02559 CarD-like/TRCF domain YPD4_RS12435 PF00270 DEAD/DEAH box helicase YPD4_RS12435 PF00271 Helicase conserved C-terminal domain YPD4_RS12435 PF03461 TRCF domain YPD4_RS12435 PF17757 UvrB interaction domain YPD4_RS12440 PF05433 Glycine zipper 2TM domain YPD4_RS12445 PF00872 Transposase, Mutator family YPD4_RS12460 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_RS12465 PF05728 Uncharacterised protein family (UPF0227) YPD4_RS12470 PF00933 Glycosyl hydrolase family 3 N terminal domain YPD4_RS12475 PF01636 Phosphotransferase enzyme family YPD4_RS12480 PF13036 Peptidoglycan-synthase activator LpoB YPD4_RS12480 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPD4_RS12485 PF07233 Protein of unknown function (DUF1425) YPD4_RS12490 PF01230 HIT domain YPD4_RS12495 PF08501 Shikimate dehydrogenase substrate binding domain YPD4_RS12505 PF02378 Phosphotransferase system, EIIC YPD4_RS12505 PF00367 phosphotransferase system, EIIB YPD4_RS12510 PF01026 TatD related DNase YPD4_RS12515 PF09115 DNA polymerase III, delta subunit, C terminal YPD4_RS12520 PF02223 Thymidylate kinase YPD4_RS12525 PF02618 YceG-like family YPD4_RS12530 PF01063 Amino-transferase class IV YPD4_RS12535 PF01797 Transposase IS200 like YPD4_RS12540 PF02801 Beta-ketoacyl synthase, C-terminal domain YPD4_RS12540 PF00109 Beta-ketoacyl synthase, N-terminal domain YPD4_RS12545 PF00550 Phosphopantetheine attachment site YPD4_RS12555 PF00698 Acyl transferase domain YPD4_RS12560 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPD4_RS12560 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPD4_RS12565 PF02504 Fatty acid synthesis protein YPD4_RS12570 PF01783 Ribosomal L32p protein family YPD4_RS12575 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPD4_RS12580 PF02545 Maf-like protein YPD4_RS12595 PF00849 RNA pseudouridylate synthase YPD4_RS12595 PF01479 S4 domain YPD4_RS12600 PF00575 S1 RNA binding domain YPD4_RS12600 PF12111 Polyribonucleotide phosphorylase C terminal YPD4_RS12600 PF10150 Ribonuclease E/G family YPD4_RS12605 PF00872 Transposase, Mutator family YPD4_RS12610 PF03992 Antibiotic biosynthesis monooxygenase YPD4_RS12615 PF01979 Amidohydrolase family YPD4_RS12620 PF06183 DinI-like family YPD4_RS12630 PF13991 BssS protein family YPD4_RS12635 PF00872 Transposase, Mutator family YPD4_RS12640 PF01266 FAD dependent oxidoreductase YPD4_RS12645 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS12650 PF01594 AI-2E family transporter YPD4_RS12655 PF17773 UPF0176 acylphosphatase like domain YPD4_RS12655 PF12368 Rhodanase C-terminal YPD4_RS12655 PF00581 Rhodanese-like domain YPD4_RS12680 PF00765 Autoinducer synthase YPD4_RS12685 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS12685 PF03472 Autoinducer binding domain YPD4_RS12690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS12690 PF03466 LysR substrate binding domain YPD4_RS12700 PF00083 Sugar (and other) transporter YPD4_RS12710 PF00248 Aldo/keto reductase family YPD4_RS12715 PF09618 CRISPR-associated protein (Cas_Csy4) YPD4_RS12720 PF09615 CRISPR-associated protein (Cas_Csy3) YPD4_RS12730 PF09611 CRISPR-associated protein (Cas_Csy1) YPD4_RS12745 PF01867 CRISPR associated protein Cas1 YPD4_RS12750 PF00924 Mechanosensitive ion channel YPD4_RS12770 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPD4_RS12775 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS12780 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS12790 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS12795 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD4_RS12795 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD4_RS12795 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD4_RS12795 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD4_RS12800 PF00005 ABC transporter YPD4_RS12800 PF17912 MalK OB fold domain YPD4_RS12810 PF04829 Pre-toxin domain with VENN motif YPD4_RS12810 PF05594 Haemagluttinin repeat YPD4_RS12810 PF05860 haemagglutination activity domain YPD4_RS12810 PF13332 Hemagglutinin repeat YPD4_RS12810 PF15526 Novel toxin 21 YPD4_RS12850 PF05860 haemagglutination activity domain YPD4_RS12850 PF13018 Extended Signal Peptide of Type V secretion system YPD4_RS12850 PF04829 Pre-toxin domain with VENN motif YPD4_RS12850 PF13332 Hemagglutinin repeat YPD4_RS12855 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_RS12855 PF08479 POTRA domain, ShlB-type YPD4_RS12855 PF17287 POTRA domain YPD4_RS12860 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_RS12860 PF00970 Oxidoreductase FAD-binding domain YPD4_RS12860 PF00175 Oxidoreductase NAD-binding domain YPD4_RS12865 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPD4_RS12865 PF00355 Rieske [2Fe-2S] domain YPD4_RS12870 PF02028 BCCT, betaine/carnitine/choline family transporter YPD4_RS12880 PF00180 Isocitrate/isopropylmalate dehydrogenase YPD4_RS12885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS12885 PF03466 LysR substrate binding domain YPD4_RS12890 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS12895 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS12900 PF00005 ABC transporter YPD4_RS12905 PF13407 Periplasmic binding protein domain YPD4_RS12910 PF00107 Zinc-binding dehydrogenase YPD4_RS12910 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_RS12930 PF13505 Outer membrane protein beta-barrel domain YPD4_RS12935 PF00892 EamA-like transporter family YPD4_RS12945 PF13649 Methyltransferase domain YPD4_RS12950 PF00210 Ferritin-like domain YPD4_RS12960 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_RS12965 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS12970 PF00005 ABC transporter YPD4_RS12975 PF13426 PAS domain YPD4_RS12975 PF08447 PAS fold YPD4_RS12975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_RS12980 PF02796 Helix-turn-helix domain of resolvase YPD4_RS12980 PF00665 Integrase core domain YPD4_RS12985 PF01695 IstB-like ATP binding protein YPD4_RS13000 PF00782 Dual specificity phosphatase, catalytic domain YPD4_RS13005 PF12146 Serine aminopeptidase, S33 YPD4_RS13005 PF12147 Putative methyltransferase YPD4_RS13010 PF01553 Acyltransferase YPD4_RS13020 PF01066 CDP-alcohol phosphatidyltransferase YPD4_RS13065 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPD4_RS13065 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPD4_RS13075 PF01797 Transposase IS200 like YPD4_RS13085 PF00586 AIR synthase related protein, N-terminal domain YPD4_RS13085 PF02769 AIR synthase related protein, C-terminal domain YPD4_RS13090 PF00551 Formyl transferase YPD4_RS13095 PF13302 Acetyltransferase (GNAT) domain YPD4_RS13110 PF00005 ABC transporter YPD4_RS13115 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS13120 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS13125 PF02503 Polyphosphate kinase middle domain YPD4_RS13125 PF13090 Polyphosphate kinase C-terminal domain 2 YPD4_RS13125 PF17941 Polyphosphate kinase C-terminal domain 1 YPD4_RS13125 PF13089 Polyphosphate kinase N-terminal domain YPD4_RS13130 PF02541 Ppx/GppA phosphatase family YPD4_RS13140 PF00571 CBS domain YPD4_RS13140 PF03448 MgtE intracellular N domain YPD4_RS13140 PF01769 Divalent cation transporter YPD4_RS13145 PF00012 Hsp70 protein YPD4_RS13155 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS13165 PF00202 Aminotransferase class-III YPD4_RS13170 PF00392 Bacterial regulatory proteins, gntR family YPD4_RS13170 PF00155 Aminotransferase class I and II YPD4_RS13180 PF13533 Biotin-lipoyl like YPD4_RS13185 PF00873 AcrB/AcrD/AcrF family YPD4_RS13190 PF00873 AcrB/AcrD/AcrF family YPD4_RS13195 PF07690 Major Facilitator Superfamily YPD4_RS13200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS13200 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS13200 PF00672 HAMP domain YPD4_RS13205 PF00672 HAMP domain YPD4_RS13205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS13205 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS13210 PF00072 Response regulator receiver domain YPD4_RS13210 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS13215 PF07411 Domain of unknown function (DUF1508) YPD4_RS13220 PF16325 Peptidase family U32 C-terminal domain YPD4_RS13220 PF01136 Peptidase family U32 YPD4_RS13225 PF00781 Diacylglycerol kinase catalytic domain YPD4_RS13240 PF08543 Phosphomethylpyrimidine kinase YPD4_RS13255 PF00872 Transposase, Mutator family YPD4_RS13285 PF05638 Type VI secretion system effector, Hcp YPD4_RS13290 PF01797 Transposase IS200 like YPD4_RS13300 PF00117 Glutamine amidotransferase class-I YPD4_RS13300 PF00958 GMP synthase C terminal domain YPD4_RS13300 PF02540 NAD synthase YPD4_RS13310 PF00478 IMP dehydrogenase / GMP reductase domain YPD4_RS13310 PF00571 CBS domain YPD4_RS13315 PF13742 OB-fold nucleic acid binding domain YPD4_RS13315 PF02601 Exonuclease VII, large subunit YPD4_RS13320 PF07191 zinc-ribbons YPD4_RS13330 PF01926 50S ribosome-binding GTPase YPD4_RS13330 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPD4_RS13335 PF13360 PQQ-like domain YPD4_RS13340 PF09976 Tetratricopeptide repeat-like domain YPD4_RS13345 PF03129 Anticodon binding domain YPD4_RS13345 PF13393 Histidyl-tRNA synthetase YPD4_RS13350 PF04551 GcpE protein YPD4_RS13355 PF13464 Domain of unknown function (DUF4115) YPD4_RS13365 PF04055 Radical SAM superfamily YPD4_RS13370 PF00334 Nucleoside diphosphate kinase YPD4_RS13385 PF03212 Pertactin YPD4_RS13385 PF03797 Autotransporter beta-domain YPD4_RS13385 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD4_RS13390 PF03212 Pertactin YPD4_RS13390 PF03797 Autotransporter beta-domain YPD4_RS13390 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD4_RS13400 PF14581 SseB protein C-terminal domain YPD4_RS13400 PF07179 SseB protein N-terminal domain YPD4_RS13405 PF00883 Cytosol aminopeptidase family, catalytic domain YPD4_RS13405 PF12404 Peptidase YPD4_RS13410 PF04384 Iron-sulphur cluster assembly YPD4_RS13415 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_RS13420 PF00012 Hsp70 protein YPD4_RS13425 PF00226 DnaJ domain YPD4_RS13425 PF07743 HSCB C-terminal oligomerisation domain YPD4_RS13430 PF01521 Iron-sulphur cluster biosynthesis YPD4_RS13435 PF01592 NifU-like N terminal domain YPD4_RS13445 PF02082 Transcriptional regulator YPD4_RS13450 PF00588 SpoU rRNA Methylase family YPD4_RS13455 PF00459 Inositol monophosphatase family YPD4_RS13460 PF01797 Transposase IS200 like YPD4_RS13465 PF03824 High-affinity nickel-transport protein YPD4_RS13470 PF06226 Protein of unknown function (DUF1007) YPD4_RS13475 PF00874 PRD domain YPD4_RS13485 PF13505 Outer membrane protein beta-barrel domain YPD4_RS13495 PF00464 Serine hydroxymethyltransferase YPD4_RS13500 PF00970 Oxidoreductase FAD-binding domain YPD4_RS13500 PF00042 Globin YPD4_RS13500 PF00175 Oxidoreductase NAD-binding domain YPD4_RS13505 PF14502 Helix-turn-helix domain YPD4_RS13505 PF14503 YhfZ C-terminal domain YPD4_RS13510 PF14502 Helix-turn-helix domain YPD4_RS13510 PF14503 YhfZ C-terminal domain YPD4_RS13515 PF00543 Nitrogen regulatory protein P-II YPD4_RS13520 PF00795 Carbon-nitrogen hydrolase YPD4_RS13520 PF02540 NAD synthase YPD4_RS13525 PF00158 Sigma-54 interaction domain YPD4_RS13525 PF00072 Response regulator receiver domain YPD4_RS13530 PF13942 YfhG lipoprotein YPD4_RS13535 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS13535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS13560 PF02769 AIR synthase related protein, C-terminal domain YPD4_RS13560 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPD4_RS13560 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPD4_RS13565 PF01464 Transglycosylase SLT domain YPD4_RS13565 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_RS13570 PF14437 MafB19-like deaminase YPD4_RS13580 PF01380 SIS domain YPD4_RS13585 PF01418 Helix-turn-helix domain, rpiR family YPD4_RS13585 PF01380 SIS domain YPD4_RS13590 PF12838 4Fe-4S dicluster domain YPD4_RS13595 PF01797 Transposase IS200 like YPD4_RS13605 PF01648 4'-phosphopantetheinyl transferase superfamily YPD4_RS13610 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPD4_RS13615 PF01695 IstB-like ATP binding protein YPD4_RS13625 PF02796 Helix-turn-helix domain of resolvase YPD4_RS13625 PF00665 Integrase core domain YPD4_RS13630 PF11967 Recombination protein O N terminal YPD4_RS13630 PF02565 Recombination protein O C terminal YPD4_RS13635 PF07650 KH domain YPD4_RS13635 PF01926 50S ribosome-binding GTPase YPD4_RS13640 PF00035 Double-stranded RNA binding motif YPD4_RS13640 PF14622 Ribonuclease-III-like YPD4_RS13645 PF10502 Signal peptidase, peptidase S26 YPD4_RS13665 PF17188 MucB/RseB C-terminal domain YPD4_RS13665 PF03888 MucB/RseB N-terminal domain YPD4_RS13670 PF03872 Anti sigma-E protein RseA, N-terminal domain YPD4_RS13670 PF03873 Anti sigma-E protein RseA, C-terminal domain YPD4_RS13675 PF08281 Sigma-70, region 4 YPD4_RS13675 PF04542 Sigma-70 region 2 YPD4_RS13680 PF02910 Fumarate reductase flavoprotein C-term YPD4_RS13680 PF00890 FAD binding domain YPD4_RS13685 PF05175 Methyltransferase small domain YPD4_RS13690 PF00270 DEAD/DEAH box helicase YPD4_RS13690 PF00271 Helicase conserved C-terminal domain YPD4_RS13695 PF12796 Ankyrin repeats (3 copies) YPD4_RS13710 PF01228 Glycine radical YPD4_RS13715 PF03167 Uracil DNA glycosylase superfamily YPD4_RS13720 PF01470 Pyroglutamyl peptidase YPD4_RS13735 PF03746 LamB/YcsF family YPD4_RS13740 PF02626 Carboxyltransferase domain, subdomain A and B YPD4_RS13750 PF01784 NIF3 (NGG1p interacting factor 3) YPD4_RS13755 PF02112 cAMP phosphodiesterases class-II YPD4_RS13760 PF03441 FAD binding domain of DNA photolyase YPD4_RS13760 PF00875 DNA photolyase YPD4_RS13765 PF08349 Protein of unknown function (DUF1722) YPD4_RS13770 PF10725 Protein of unknown function (DUF2517) YPD4_RS13785 PF03814 Potassium-transporting ATPase A subunit YPD4_RS13795 PF02669 K+-transporting ATPase, c chain YPD4_RS13800 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS13800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS13800 PF13493 Domain of unknown function (DUF4118) YPD4_RS13800 PF13492 GAF domain YPD4_RS13800 PF02702 Osmosensitive K+ channel His kinase sensor domain YPD4_RS13805 PF00072 Response regulator receiver domain YPD4_RS13805 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS13825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD4_RS13825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD4_RS13825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD4_RS13825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD4_RS13830 PF03925 SeqA protein C-terminal domain YPD4_RS13830 PF17206 SeqA protein N-terminal domain YPD4_RS13845 PF04794 YdjC-like protein YPD4_RS13850 PF12833 Helix-turn-helix domain YPD4_RS13850 PF07883 Cupin domain YPD4_RS13855 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPD4_RS13860 PF02378 Phosphotransferase system, EIIC YPD4_RS13865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPD4_RS13875 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPD4_RS13880 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPD4_RS13885 PF07885 Ion channel YPD4_RS13885 PF02254 TrkA-N domain YPD4_RS13895 PF06411 HdeA/HdeB family YPD4_RS13900 PF03824 High-affinity nickel-transport protein YPD4_RS13905 PF03253 Urea transporter YPD4_RS13910 PF01774 UreD urease accessory protein YPD4_RS13915 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPD4_RS13920 PF01730 UreF YPD4_RS13925 PF05194 UreE urease accessory protein, C-terminal domain YPD4_RS13925 PF02814 UreE urease accessory protein, N-terminal domain YPD4_RS13930 PF00449 Urease alpha-subunit, N-terminal domain YPD4_RS13930 PF01979 Amidohydrolase family YPD4_RS13935 PF00699 Urease beta subunit YPD4_RS13940 PF00547 Urease, gamma subunit YPD4_RS13945 PF00005 ABC transporter YPD4_RS13950 PF00005 ABC transporter YPD4_RS13955 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS13955 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_RS13960 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS13965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_RS13980 PF06711 Protein of unknown function (DUF1198) YPD4_RS13985 PF09400 Protein of unknown function (DUF2002) YPD4_RS13990 PF06392 Acid shock protein repeat YPD4_RS14000 PF07972 NrdI Flavodoxin like YPD4_RS14010 PF00268 Ribonucleotide reductase, small chain YPD4_RS14015 PF00571 CBS domain YPD4_RS14015 PF00005 ABC transporter YPD4_RS14020 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS14025 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPD4_RS14035 PF02796 Helix-turn-helix domain of resolvase YPD4_RS14035 PF00665 Integrase core domain YPD4_RS14040 PF01695 IstB-like ATP binding protein YPD4_RS14045 PF13356 Arm DNA-binding domain YPD4_RS14045 PF00589 Phage integrase family YPD4_RS14050 PF01527 Transposase YPD4_RS14055 PF00589 Phage integrase family YPD4_RS14055 PF13356 Arm DNA-binding domain YPD4_RS14065 PF12697 Alpha/beta hydrolase family YPD4_RS14075 PF01402 Ribbon-helix-helix protein, copG family YPD4_RS14085 PF01475 Ferric uptake regulator family YPD4_RS14095 PF03573 outer membrane porin, OprD family YPD4_RS14100 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPD4_RS14100 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPD4_RS14105 PF01797 Transposase IS200 like YPD4_RS14115 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPD4_RS14120 PF01979 Amidohydrolase family YPD4_RS14125 PF01047 MarR family YPD4_RS14125 PF00480 ROK family YPD4_RS14130 PF13344 Haloacid dehalogenase-like hydrolase YPD4_RS14135 PF00733 Asparagine synthase YPD4_RS14135 PF13537 Glutamine amidotransferase domain YPD4_RS14175 PF01494 FAD binding domain YPD4_RS14180 PF00919 Uncharacterized protein family UPF0004 YPD4_RS14180 PF04055 Radical SAM superfamily YPD4_RS14180 PF01938 TRAM domain YPD4_RS14185 PF02562 PhoH-like protein YPD4_RS14190 PF02130 Uncharacterized protein family UPF0054 YPD4_RS14195 PF03471 Transporter associated domain YPD4_RS14195 PF00571 CBS domain YPD4_RS14200 PF00795 Carbon-nitrogen hydrolase YPD4_RS14205 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_RS14210 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS14220 PF00005 ABC transporter YPD4_RS14225 PF07295 Zinc-ribbon containing domain YPD4_RS14230 PF13603 Leucyl-tRNA synthetase, Domain 2 YPD4_RS14230 PF08264 Anticodon-binding domain of tRNA YPD4_RS14230 PF00133 tRNA synthetases class I (I, L, M and V) YPD4_RS14235 PF04390 Lipopolysaccharide-assembly YPD4_RS14245 PF01467 Cytidylyltransferase-like YPD4_RS14255 PF02590 Predicted SPOUT methyltransferase YPD4_RS14260 PF00905 Penicillin binding protein transpeptidase domain YPD4_RS14260 PF03717 Penicillin-binding Protein dimerisation domain YPD4_RS14265 PF01098 Cell cycle protein YPD4_RS14275 PF00768 D-alanyl-D-alanine carboxypeptidase YPD4_RS14275 PF07943 Penicillin-binding protein 5, C-terminal domain YPD4_RS14280 PF04359 Protein of unknown function (DUF493) YPD4_RS14285 PF03099 Biotin/lipoate A/B protein ligase family YPD4_RS14290 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPD4_RS14290 PF04055 Radical SAM superfamily YPD4_RS14295 PF02416 mttA/Hcf106 family YPD4_RS14305 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPD4_RS14310 PF00313 'Cold-shock' DNA-binding domain YPD4_RS14315 PF00313 'Cold-shock' DNA-binding domain YPD4_RS14320 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS14345 PF00664 ABC transporter transmembrane region YPD4_RS14345 PF00005 ABC transporter YPD4_RS14355 PF04962 KduI/IolB family YPD4_RS14360 PF01261 Xylose isomerase-like TIM barrel YPD4_RS14365 PF00294 pfkB family carbohydrate kinase YPD4_RS14370 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_RS14370 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD4_RS14375 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS14380 PF00005 ABC transporter YPD4_RS14385 PF13407 Periplasmic binding protein domain YPD4_RS14395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_RS14395 PF00205 Thiamine pyrophosphate enzyme, central domain YPD4_RS14395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_RS14400 PF00171 Aldehyde dehydrogenase family YPD4_RS14415 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPD4_RS14415 PF00207 Alpha-2-macroglobulin family YPD4_RS14415 PF07703 Alpha-2-macroglobulin bait region domain YPD4_RS14415 PF01835 MG2 domain YPD4_RS14415 PF17962 Bacterial macroglobulin domain 6 YPD4_RS14415 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPD4_RS14415 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPD4_RS14420 PF00912 Transglycosylase YPD4_RS14420 PF00905 Penicillin binding protein transpeptidase domain YPD4_RS14420 PF06832 Penicillin-Binding Protein C-terminus Family YPD4_RS14425 PF00872 Transposase, Mutator family YPD4_RS14435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD4_RS14440 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_RS14440 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS14445 PF07085 DRTGG domain YPD4_RS14445 PF01515 Phosphate acetyl/butaryl transferase YPD4_RS14450 PF00871 Acetokinase family YPD4_RS14460 PF04217 Protein of unknown function, DUF412 YPD4_RS14465 PF03887 YfbU domain YPD4_RS14470 PF13419 Haloacid dehalogenase-like hydrolase YPD4_RS14475 PF02080 TrkA-C domain YPD4_RS14475 PF03600 Citrate transporter YPD4_RS14490 PF00155 Aminotransferase class I and II YPD4_RS14500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS14500 PF03466 LysR substrate binding domain YPD4_RS14505 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPD4_RS14510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPD4_RS14515 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPD4_RS14515 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPD4_RS14525 PF10531 SLBB domain YPD4_RS14525 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPD4_RS14525 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPD4_RS14530 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPD4_RS14530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_RS14530 PF01568 Molydopterin dinucleotide binding domain YPD4_RS14530 PF00384 Molybdopterin oxidoreductase YPD4_RS14535 PF00146 NADH dehydrogenase YPD4_RS14540 PF12838 4Fe-4S dicluster domain YPD4_RS14545 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPD4_RS14550 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPD4_RS14555 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPD4_RS14555 PF00361 Proton-conducting membrane transporter YPD4_RS14560 PF00361 Proton-conducting membrane transporter YPD4_RS14565 PF00361 Proton-conducting membrane transporter YPD4_RS14575 PF04074 YhcH/YjgK/YiaL YPD4_RS14580 PF01202 Shikimate kinase YPD4_RS14585 PF00106 short chain dehydrogenase YPD4_RS14590 PF02638 Glycosyl hydrolase-like 10 YPD4_RS14595 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS14605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_RS14605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_RS14610 PF07690 Major Facilitator Superfamily YPD4_RS14615 PF03928 Haem-degrading YPD4_RS14620 PF00920 Dehydratase family YPD4_RS14635 PF05957 Bacterial protein of unknown function (DUF883) YPD4_RS14645 PF00425 chorismate binding enzyme YPD4_RS14650 PF16582 Middle domain of thiamine pyrophosphate YPD4_RS14650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_RS14650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_RS14655 PF12697 Alpha/beta hydrolase family YPD4_RS14665 PF13378 Enolase C-terminal domain-like YPD4_RS14670 PF13193 AMP-binding enzyme C-terminal domain YPD4_RS14670 PF00501 AMP-binding enzyme YPD4_RS14675 PF02885 Glycosyl transferase family, helical bundle domain YPD4_RS14680 PF07338 Protein of unknown function (DUF1471) YPD4_RS14685 PF05971 RNA methyltransferase YPD4_RS14690 PF01695 IstB-like ATP binding protein YPD4_RS14695 PF00665 Integrase core domain YPD4_RS14695 PF02796 Helix-turn-helix domain of resolvase YPD4_RS14700 PF03466 LysR substrate binding domain YPD4_RS14700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS14705 PF00248 Aldo/keto reductase family YPD4_RS14710 PF00248 Aldo/keto reductase family YPD4_RS14730 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPD4_RS14730 PF00933 Glycosyl hydrolase family 3 N terminal domain YPD4_RS14730 PF14310 Fibronectin type III-like domain YPD4_RS14745 PF00872 Transposase, Mutator family YPD4_RS14750 PF08007 Cupin superfamily protein YPD4_RS14760 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD4_RS14760 PF03797 Autotransporter beta-domain YPD4_RS14760 PF13018 Extended Signal Peptide of Type V secretion system YPD4_RS14760 PF03212 Pertactin YPD4_RS14775 PF05638 Type VI secretion system effector, Hcp YPD4_RS14800 PF13693 Winged helix-turn-helix DNA-binding YPD4_RS14805 PF00905 Penicillin binding protein transpeptidase domain YPD4_RS14805 PF00912 Transglycosylase YPD4_RS14805 PF06832 Penicillin-Binding Protein C-terminus Family YPD4_RS14810 PF00872 Transposase, Mutator family YPD4_RS14815 PF03611 PTS system sugar-specific permease component YPD4_RS14820 PF00293 NUDIX domain YPD4_RS14825 PF12850 Calcineurin-like phosphoesterase superfamily domain YPD4_RS14835 PF08338 Domain of unknown function (DUF1731) YPD4_RS14835 PF01370 NAD dependent epimerase/dehydratase family YPD4_RS14840 PF00005 ABC transporter YPD4_RS14845 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS14850 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS14855 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_RS14860 PF02441 Flavoprotein YPD4_RS14865 PF00156 Phosphoribosyl transferase domain YPD4_RS14870 PF02674 Colicin V production protein YPD4_RS14875 PF05036 Sporulation related domain YPD4_RS14880 PF02875 Mur ligase family, glutamate ligase domain YPD4_RS14880 PF08245 Mur ligase middle domain YPD4_RS14885 PF17848 Acetyl-coA carboxylase zinc finger domain YPD4_RS14885 PF01039 Carboxyl transferase domain YPD4_RS14890 PF09335 SNARE associated Golgi protein YPD4_RS14895 PF01416 tRNA pseudouridine synthase YPD4_RS14900 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPD4_RS14900 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPD4_RS14905 PF11890 Domain of unknown function (DUF3410) YPD4_RS14905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_RS14905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_RS14920 PF00892 EamA-like transporter family YPD4_RS14930 PF00419 Fimbrial protein YPD4_RS14935 PF01177 Asp/Glu/Hydantoin racemase YPD4_RS14945 PF01266 FAD dependent oxidoreductase YPD4_RS14945 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPD4_RS14950 PF08891 YfcL protein YPD4_RS14955 PF04315 Elongation factor P hydroxylase YPD4_RS14960 PF01925 Sulfite exporter TauE/SafE YPD4_RS14965 PF03411 Penicillin-insensitive murein endopeptidase YPD4_RS14970 PF01264 Chorismate synthase YPD4_RS14975 PF05175 Methyltransferase small domain YPD4_RS14980 PF01713 Smr domain YPD4_RS14985 PF00300 Histidine phosphatase superfamily (branch 1) YPD4_RS14990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPD4_RS14990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPD4_RS14990 PF00378 Enoyl-CoA hydratase/isomerase YPD4_RS14995 PF00108 Thiolase, N-terminal domain YPD4_RS14995 PF02803 Thiolase, C-terminal domain YPD4_RS15000 PF04175 Protein of unknown function (DUF406) YPD4_RS15005 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPD4_RS15010 PF04333 MlaA lipoprotein YPD4_RS15015 PF03918 Cytochrome C biogenesis protein YPD4_RS15020 PF03918 Cytochrome C biogenesis protein YPD4_RS15025 PF08534 Redoxin YPD4_RS15030 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPD4_RS15030 PF01578 Cytochrome C assembly protein YPD4_RS15035 PF03100 CcmE YPD4_RS15040 PF04995 Heme exporter protein D (CcmD) YPD4_RS15045 PF01578 Cytochrome C assembly protein YPD4_RS15050 PF03379 CcmB protein YPD4_RS15055 PF00005 ABC transporter YPD4_RS15070 PF04011 LemA family YPD4_RS15080 PF08274 PhnA Zinc-Ribbon YPD4_RS15080 PF03831 PhnA domain YPD4_RS15095 PF07024 ImpE protein YPD4_RS15110 PF04717 Type VI secretion system, phage-baseplate injector YPD4_RS15110 PF06715 Gp5 C-terminal repeat (3 copies) YPD4_RS15115 PF06744 Type VI secretion protein IcmF C-terminal YPD4_RS15115 PF14331 ImcF-related N-terminal domain YPD4_RS15115 PF06761 Intracellular multiplication and human macrophage-killing YPD4_RS15125 PF01695 IstB-like ATP binding protein YPD4_RS15130 PF00665 Integrase core domain YPD4_RS15130 PF02796 Helix-turn-helix domain of resolvase YPD4_RS15140 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPD4_RS15155 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPD4_RS15160 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPD4_RS15170 PF13954 PapC N-terminal domain YPD4_RS15170 PF13953 PapC C-terminal domain YPD4_RS15170 PF00577 Outer membrane usher protein YPD4_RS15175 PF00872 Transposase, Mutator family YPD4_RS15180 PF13953 PapC C-terminal domain YPD4_RS15180 PF00577 Outer membrane usher protein YPD4_RS15180 PF13954 PapC N-terminal domain YPD4_RS15185 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS15185 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_RS15190 PF16970 Type-1 fimbrial protein, A YPD4_RS15195 PF17871 AAA lid domain YPD4_RS15195 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_RS15195 PF07724 AAA domain (Cdc48 subfamily) YPD4_RS15195 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_RS15200 PF05947 Type VI secretion system, TssF YPD4_RS15245 PF13406 Transglycosylase SLT domain YPD4_RS15255 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS15260 PF00005 ABC transporter YPD4_RS15270 PF05638 Type VI secretion system effector, Hcp YPD4_RS15280 PF00384 Molybdopterin oxidoreductase YPD4_RS15280 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_RS15280 PF01568 Molydopterin dinucleotide binding domain YPD4_RS15285 PF13247 4Fe-4S dicluster domain YPD4_RS15285 PF12800 4Fe-4S binding domain YPD4_RS15290 PF04976 DMSO reductase anchor subunit (DmsC) YPD4_RS15295 PF02613 Nitrate reductase delta subunit YPD4_RS15305 PF05643 Putative bacterial lipoprotein (DUF799) YPD4_RS15315 PF03783 Curli production assembly/transport component CsgG YPD4_RS15325 PF01292 Prokaryotic cytochrome b561 YPD4_RS15330 PF00155 Aminotransferase class I and II YPD4_RS15335 PF07350 Protein of unknown function (DUF1479) YPD4_RS15340 PF02685 Glucokinase YPD4_RS15350 PF03466 LysR substrate binding domain YPD4_RS15350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS15355 PF00248 Aldo/keto reductase family YPD4_RS15365 PF01566 Natural resistance-associated macrophage protein YPD4_RS15370 PF07662 Na+ dependent nucleoside transporter C-terminus YPD4_RS15370 PF01773 Na+ dependent nucleoside transporter N-terminus YPD4_RS15370 PF07670 Nucleoside recognition YPD4_RS15395 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPD4_RS15400 PF01797 Transposase IS200 like YPD4_RS15425 PF12843 Putative quorum-sensing-regulated virulence factor YPD4_RS15430 PF00533 BRCA1 C Terminus (BRCT) domain YPD4_RS15430 PF01653 NAD-dependent DNA ligase adenylation domain YPD4_RS15430 PF03120 NAD-dependent DNA ligase OB-fold domain YPD4_RS15430 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPD4_RS15430 PF12826 Helix-hairpin-helix motif YPD4_RS15435 PF04354 ZipA, C-terminal FtsZ-binding domain YPD4_RS15445 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_RS15450 PF00381 PTS HPr component phosphorylation site YPD4_RS15455 PF00391 PEP-utilising enzyme, mobile domain YPD4_RS15455 PF05524 PEP-utilising enzyme, N-terminal YPD4_RS15455 PF02896 PEP-utilising enzyme, TIM barrel domain YPD4_RS15460 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPD4_RS15475 PF16527 Two-component sensor protein CpxA, periplasmic domain YPD4_RS15475 PF00672 HAMP domain YPD4_RS15475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS15475 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS15480 PF00072 Response regulator receiver domain YPD4_RS15480 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS15485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_RS15490 PF00005 ABC transporter YPD4_RS15490 PF02687 FtsX-like permease family YPD4_RS15490 PF12704 MacB-like periplasmic core domain YPD4_RS15495 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_RS15495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD4_RS15500 PF00474 Sodium:solute symporter family YPD4_RS15510 PF00557 Metallopeptidase family M24 YPD4_RS15520 PF00155 Aminotransferase class I and II YPD4_RS15530 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS15530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS15530 PF00672 HAMP domain YPD4_RS15535 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS15535 PF00072 Response regulator receiver domain YPD4_RS15545 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_RS15550 PF00005 ABC transporter YPD4_RS15555 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS15560 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS15570 PF07690 Major Facilitator Superfamily YPD4_RS15585 PF04074 YhcH/YjgK/YiaL YPD4_RS15590 PF00480 ROK family YPD4_RS15595 PF12468 Type III secretion system leucine rich repeat protein YPD4_RS15600 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPD4_RS15605 PF00701 Dihydrodipicolinate synthetase family YPD4_RS15610 PF04261 Dyp-type peroxidase family YPD4_RS15615 PF06572 Protein of unknown function (DUF1131) YPD4_RS15620 PF04076 Bacterial OB fold (BOF) protein YPD4_RS15625 PF03212 Pertactin YPD4_RS15625 PF13018 Extended Signal Peptide of Type V secretion system YPD4_RS15625 PF03797 Autotransporter beta-domain YPD4_RS15625 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPD4_RS15640 PF00583 Acetyltransferase (GNAT) family YPD4_RS15645 PF01218 Coproporphyrinogen III oxidase YPD4_RS15650 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPD4_RS15655 PF03949 Malic enzyme, NAD binding domain YPD4_RS15655 PF01515 Phosphate acetyl/butaryl transferase YPD4_RS15655 PF00390 Malic enzyme, N-terminal domain YPD4_RS15660 PF00293 NUDIX domain YPD4_RS15665 PF03264 NapC/NirT cytochrome c family, N-terminal region YPD4_RS15670 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPD4_RS15675 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPD4_RS15675 PF01568 Molydopterin dinucleotide binding domain YPD4_RS15675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_RS15675 PF00384 Molybdopterin oxidoreductase YPD4_RS15680 PF03927 NapD protein YPD4_RS15685 PF00037 4Fe-4S binding domain YPD4_RS15685 PF12800 4Fe-4S binding domain YPD4_RS15685 PF13187 4Fe-4S dicluster domain YPD4_RS15690 PF00072 Response regulator receiver domain YPD4_RS15690 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS15700 PF00873 AcrB/AcrD/AcrF family YPD4_RS15710 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPD4_RS15715 PF13186 Iron-sulfur cluster-binding domain YPD4_RS15715 PF04055 Radical SAM superfamily YPD4_RS15720 PF00884 Sulfatase YPD4_RS15725 PF00005 ABC transporter YPD4_RS15725 PF08402 TOBE domain YPD4_RS15730 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS15745 PF03960 ArsC family YPD4_RS15755 PF02557 D-alanyl-D-alanine carboxypeptidase YPD4_RS15760 PF13980 Uncharacterised protein family (UPF0370) YPD4_RS15770 PF04284 Protein of unknown function (DUF441) YPD4_RS15775 PF04228 Putative neutral zinc metallopeptidase YPD4_RS15780 PF01259 SAICAR synthetase YPD4_RS15785 PF01797 Transposase IS200 like YPD4_RS15795 PF06804 NlpB/DapX lipoprotein YPD4_RS15800 PF00701 Dihydrodipicolinate synthetase family YPD4_RS15805 PF01842 ACT domain YPD4_RS15810 PF00578 AhpC/TSA family YPD4_RS15830 PF01594 AI-2E family transporter YPD4_RS15835 PF01435 Peptidase family M48 YPD4_RS15835 PF07720 Tetratricopeptide repeat YPD4_RS15840 PF03960 ArsC family YPD4_RS15845 PF00308 Bacterial dnaA protein YPD4_RS15850 PF01797 Transposase IS200 like YPD4_RS15860 PF01406 tRNA synthetases class I (C) catalytic domain YPD4_RS15860 PF09190 DALR domain YPD4_RS15865 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPD4_RS15870 PF00149 Calcineurin-like phosphoesterase YPD4_RS15875 PF00731 AIR carboxylase YPD4_RS15880 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPD4_RS15880 PF02222 ATP-grasp domain YPD4_RS15890 PF00005 ABC transporter YPD4_RS15895 PF13472 GDSL-like Lipase/Acylhydrolase family YPD4_RS15900 PF00106 short chain dehydrogenase YPD4_RS15905 PF00085 Thioredoxin YPD4_RS15910 PF16200 C-terminal region of band_7 YPD4_RS15910 PF01145 SPFH domain / Band 7 family YPD4_RS15915 PF01957 NfeD-like C-terminal, partner-binding YPD4_RS15920 PF13411 MerR HTH family regulatory protein YPD4_RS15925 PF00403 Heavy-metal-associated domain YPD4_RS15930 PF01963 TraB family YPD4_RS15935 PF04073 Aminoacyl-tRNA editing domain YPD4_RS15950 PF02872 5'-nucleotidase, C-terminal domain YPD4_RS15950 PF00149 Calcineurin-like phosphoesterase YPD4_RS15955 PF00149 Calcineurin-like phosphoesterase YPD4_RS15955 PF02872 5'-nucleotidase, C-terminal domain YPD4_RS15960 PF00149 Calcineurin-like phosphoesterase YPD4_RS15960 PF02872 5'-nucleotidase, C-terminal domain YPD4_RS15965 PF07690 Major Facilitator Superfamily YPD4_RS15970 PF02254 TrkA-N domain YPD4_RS15970 PF00999 Sodium/hydrogen exchanger family YPD4_RS15975 PF00294 pfkB family carbohydrate kinase YPD4_RS15980 PF02706 Chain length determinant protein YPD4_RS15985 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD4_RS15985 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD4_RS15985 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD4_RS15985 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD4_RS15990 PF00535 Glycosyl transferase family 2 YPD4_RS15995 PF00483 Nucleotidyl transferase YPD4_RS15995 PF01050 Mannose-6-phosphate isomerase YPD4_RS16000 PF01370 NAD dependent epimerase/dehydratase family YPD4_RS16010 PF00534 Glycosyl transferases group 1 YPD4_RS16010 PF13439 Glycosyltransferase Family 4 YPD4_RS16040 PF01370 NAD dependent epimerase/dehydratase family YPD4_RS16045 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPD4_RS16050 PF16363 GDP-mannose 4,6 dehydratase YPD4_RS16055 PF16363 GDP-mannose 4,6 dehydratase YPD4_RS16060 PF00483 Nucleotidyl transferase YPD4_RS16065 PF00970 Oxidoreductase FAD-binding domain YPD4_RS16065 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_RS16065 PF00175 Oxidoreductase NAD-binding domain YPD4_RS16070 PF00762 Ferrochelatase YPD4_RS16075 PF05191 Adenylate kinase, active site lid YPD4_RS16080 PF00183 Hsp90 protein YPD4_RS16080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS16085 PF13662 Toprim domain YPD4_RS16085 PF02132 RecR protein YPD4_RS16090 PF02575 YbaB/EbfC DNA-binding family YPD4_RS16095 PF12170 DNA polymerase III tau subunit V interacting with alpha YPD4_RS16095 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPD4_RS16095 PF12169 DNA polymerase III subunits gamma and tau domain III YPD4_RS16100 PF00156 Phosphoribosyl transferase domain YPD4_RS16115 PF10689 Protein of unknown function (DUF2496) YPD4_RS16120 PF12795 Mechanosensitive ion channel porin domain YPD4_RS16120 PF00924 Mechanosensitive ion channel YPD4_RS16120 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPD4_RS16125 PF02635 DsrE/DsrF-like family YPD4_RS16130 PF08361 MAATS-type transcriptional repressor, C-terminal region YPD4_RS16130 PF00440 Bacterial regulatory proteins, tetR family YPD4_RS16135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_RS16135 PF00529 HlyD membrane-fusion protein of T1SS YPD4_RS16145 PF01197 Ribosomal protein L31 YPD4_RS16150 PF00444 Ribosomal protein L36 YPD4_RS16160 PF10757 Biofilm formation regulator YbaJ YPD4_RS16165 PF05321 Haemolysin expression modulating protein YPD4_RS16170 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPD4_RS16175 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPD4_RS16185 PF00909 Ammonium Transporter Family YPD4_RS16190 PF00543 Nitrogen regulatory protein P-II YPD4_RS16195 PF00664 ABC transporter transmembrane region YPD4_RS16195 PF00005 ABC transporter YPD4_RS16200 PF00005 ABC transporter YPD4_RS16200 PF00664 ABC transporter transmembrane region YPD4_RS16205 PF13404 AsnC-type helix-turn-helix domain YPD4_RS16205 PF01037 Lrp/AsnC ligand binding domain YPD4_RS16210 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_RS16220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_RS16220 PF12793 Sugar transport-related sRNA regulator N-term YPD4_RS16225 PF06508 Queuosine biosynthesis protein QueC YPD4_RS16240 PF13145 PPIC-type PPIASE domain YPD4_RS16245 PF00216 Bacterial DNA-binding protein YPD4_RS16255 PF07724 AAA domain (Cdc48 subfamily) YPD4_RS16255 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_RS16255 PF06689 ClpX C4-type zinc finger YPD4_RS16260 PF00574 Clp protease YPD4_RS16265 PF05697 Bacterial trigger factor protein (TF) YPD4_RS16265 PF05698 Bacterial trigger factor protein (TF) C-terminus YPD4_RS16265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD4_RS16275 PF01722 BolA-like protein YPD4_RS16280 PF03923 Uncharacterized lipoprotein YPD4_RS16280 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPD4_RS16285 PF07690 Major Facilitator Superfamily YPD4_RS16290 PF03502 Nucleoside-specific channel-forming protein, Tsx YPD4_RS16295 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPD4_RS16295 PF06481 COX Aromatic Rich Motif YPD4_RS16300 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPD4_RS16305 PF00510 Cytochrome c oxidase subunit III YPD4_RS16310 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPD4_RS16315 PF01040 UbiA prenyltransferase family YPD4_RS16320 PF07690 Major Facilitator Superfamily YPD4_RS16325 PF04461 Protein of unknown function (DUF520) YPD4_RS16330 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPD4_RS16330 PF02558 Ketopantoate reductase PanE/ApbA YPD4_RS16335 PF01965 DJ-1/PfpI family YPD4_RS16340 PF02568 Thiamine biosynthesis protein (ThiI) YPD4_RS16340 PF02926 THUMP domain YPD4_RS16350 PF02609 Exonuclease VII small subunit YPD4_RS16355 PF00348 Polyprenyl synthetase YPD4_RS16360 PF02779 Transketolase, pyrimidine binding domain YPD4_RS16360 PF02780 Transketolase, C-terminal domain YPD4_RS16360 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPD4_RS16375 PF04608 Phosphatidylglycerophosphatase A YPD4_RS16380 PF00586 AIR synthase related protein, N-terminal domain YPD4_RS16380 PF02769 AIR synthase related protein, C-terminal domain YPD4_RS16385 PF01029 NusB family YPD4_RS16390 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPD4_RS16395 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPD4_RS16395 PF01872 RibD C-terminal domain YPD4_RS16400 PF03477 ATP cone domain YPD4_RS16420 PF01797 Transposase IS200 like YPD4_RS16425 PF07549 SecD/SecF GG Motif YPD4_RS16425 PF02355 Protein export membrane protein YPD4_RS16430 PF02355 Protein export membrane protein YPD4_RS16430 PF13721 SecD export protein N-terminal TM region YPD4_RS16430 PF07549 SecD/SecF GG Motif YPD4_RS16435 PF02699 Preprotein translocase subunit YPD4_RS16440 PF01702 Queuine tRNA-ribosyltransferase YPD4_RS16445 PF02547 Queuosine biosynthesis protein YPD4_RS16455 PF00578 AhpC/TSA family YPD4_RS16455 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPD4_RS16480 PF02903 Alpha amylase, N-terminal ig-like domain YPD4_RS16480 PF00128 Alpha amylase, catalytic domain YPD4_RS16485 PF00324 Amino acid permease YPD4_RS16490 PF05525 Branched-chain amino acid transport protein YPD4_RS16495 PF12849 PBP superfamily domain YPD4_RS16500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS16500 PF00989 PAS fold YPD4_RS16500 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS16500 PF11808 Phosphate regulon sensor protein PhoR YPD4_RS16505 PF00072 Response regulator receiver domain YPD4_RS16505 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS16515 PF00149 Calcineurin-like phosphoesterase YPD4_RS16515 PF12320 Type 5 capsule protein repressor C-terminal domain YPD4_RS16520 PF13476 AAA domain YPD4_RS16525 PF00480 ROK family YPD4_RS16530 PF04381 Putative exonuclease, RdgC YPD4_RS16535 PF06865 Pyrimidine/purine nucleoside phosphorylase YPD4_RS16545 PF01202 Shikimate kinase YPD4_RS16560 PF08241 Methyltransferase domain YPD4_RS16570 PF07317 Flagellar regulator YcgR YPD4_RS16570 PF07238 PilZ domain YPD4_RS16575 PF00171 Aldehyde dehydrogenase family YPD4_RS16580 PF01472 PUA domain YPD4_RS16580 PF00696 Amino acid kinase family YPD4_RS16585 PF07417 Sigma factor-binding transcriptional regulator Crl YPD4_RS16590 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) YPD4_RS16595 PF00156 Phosphoribosyl transferase domain YPD4_RS16620 PF07687 Peptidase dimerisation domain YPD4_RS16620 PF01546 Peptidase family M20/M25/M40 YPD4_RS16625 PF11798 IMS family HHH motif YPD4_RS16625 PF00817 impB/mucB/samB family YPD4_RS16625 PF11799 impB/mucB/samB family C-terminal domain YPD4_RS16630 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD4_RS16640 PF02424 ApbE family YPD4_RS16645 PF00111 2Fe-2S iron-sulfur cluster binding domain YPD4_RS16645 PF00970 Oxidoreductase FAD-binding domain YPD4_RS16645 PF00175 Oxidoreductase NAD-binding domain YPD4_RS16650 PF02508 Rnf-Nqr subunit, membrane protein YPD4_RS16655 PF02508 Rnf-Nqr subunit, membrane protein YPD4_RS16660 PF04205 FMN-binding domain YPD4_RS16665 PF03116 NQR2, RnfD, RnfE family YPD4_RS16670 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPD4_RS16670 PF11973 NQRA C-terminal domain YPD4_RS16675 PF03734 L,D-transpeptidase catalytic domain YPD4_RS16680 PF13230 Glutamine amidotransferases class-II YPD4_RS16685 PF13580 SIS domain YPD4_RS16690 PF09317 Domain of unknown function (DUF1974) YPD4_RS16690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPD4_RS16690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPD4_RS16700 PF18071 HMW1C N-terminal YPD4_RS16700 PF18254 HMW1 domain 2 YPD4_RS16705 PF05860 haemagglutination activity domain YPD4_RS16710 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_RS16710 PF08479 POTRA domain, ShlB-type YPD4_RS16715 PF07687 Peptidase dimerisation domain YPD4_RS16715 PF01546 Peptidase family M20/M25/M40 YPD4_RS16720 PF00266 Aminotransferase class-V YPD4_RS16725 PF02796 Helix-turn-helix domain of resolvase YPD4_RS16725 PF00665 Integrase core domain YPD4_RS16730 PF01695 IstB-like ATP binding protein YPD4_RS16735 PF00266 Aminotransferase class-V YPD4_RS16740 PF00005 ABC transporter YPD4_RS16745 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS16750 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS16755 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_RS16775 PF01425 Amidase YPD4_RS16785 PF07690 Major Facilitator Superfamily YPD4_RS16790 PF03591 AzlC protein YPD4_RS16795 PF05437 Branched-chain amino acid transport protein (AzlD) YPD4_RS16800 PF01047 MarR family YPD4_RS16805 PF00529 HlyD membrane-fusion protein of T1SS YPD4_RS16805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_RS16815 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPD4_RS16815 PF00588 SpoU rRNA Methylase family YPD4_RS16825 PF03942 DTW domain YPD4_RS16830 PF00583 Acetyltransferase (GNAT) family YPD4_RS16830 PF13607 Succinyl-CoA ligase like flavodoxin domain YPD4_RS16830 PF13380 CoA binding domain YPD4_RS16835 PF13091 PLD-like domain YPD4_RS16840 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPD4_RS16885 PF00849 RNA pseudouridylate synthase YPD4_RS16885 PF01479 S4 domain YPD4_RS16890 PF13525 Outer membrane lipoprotein YPD4_RS16895 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPD4_RS16900 PF01797 Transposase IS200 like YPD4_RS16910 PF01817 Chorismate mutase type II YPD4_RS16910 PF00800 Prephenate dehydratase YPD4_RS16915 PF02153 Prephenate dehydrogenase YPD4_RS16915 PF01817 Chorismate mutase type II YPD4_RS16925 PF04397 LytTr DNA-binding domain YPD4_RS16925 PF00072 Response regulator receiver domain YPD4_RS16930 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPD4_RS16935 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPD4_RS16940 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPD4_RS16945 PF04338 Protein of unknown function, DUF481 YPD4_RS16960 PF01245 Ribosomal protein L19 YPD4_RS16965 PF01746 tRNA (Guanine-1)-methyltransferase YPD4_RS16975 PF00886 Ribosomal protein S16 YPD4_RS16980 PF00448 SRP54-type protein, GTPase domain YPD4_RS16980 PF02881 SRP54-type protein, helical bundle domain YPD4_RS16980 PF02978 Signal peptide binding domain YPD4_RS16985 PF01578 Cytochrome C assembly protein YPD4_RS16990 PF00571 CBS domain YPD4_RS16990 PF01595 Cyclin M transmembrane N-terminal domain YPD4_RS16990 PF03471 Transporter associated domain YPD4_RS17005 PF02664 S-Ribosylhomocysteinase (LuxS) YPD4_RS17010 PF04262 Glutamate-cysteine ligase YPD4_RS17015 PF09335 SNARE associated Golgi protein YPD4_RS17020 PF13419 Haloacid dehalogenase-like hydrolase YPD4_RS17040 PF02599 Global regulator protein family YPD4_RS17045 PF02272 DHHA1 domain YPD4_RS17045 PF01411 tRNA synthetases class II (A) YPD4_RS17045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPD4_RS17050 PF02631 RecX family YPD4_RS17055 PF00154 recA bacterial DNA recombination protein YPD4_RS17060 PF02464 Competence-damaged protein YPD4_RS17065 PF07690 Major Facilitator Superfamily YPD4_RS17080 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_RS17080 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_RS17085 PF02779 Transketolase, pyrimidine binding domain YPD4_RS17085 PF02780 Transketolase, C-terminal domain YPD4_RS17090 PF00456 Transketolase, thiamine diphosphate binding domain YPD4_RS17095 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS17100 PF00005 ABC transporter YPD4_RS17110 PF13407 Periplasmic binding protein domain YPD4_RS17115 PF00141 Peroxidase YPD4_RS17120 PF07361 Cytochrome b562 YPD4_RS17125 PF01292 Prokaryotic cytochrome b561 YPD4_RS17130 PF02613 Nitrate reductase delta subunit YPD4_RS17135 PF04976 DMSO reductase anchor subunit (DmsC) YPD4_RS17140 PF13247 4Fe-4S dicluster domain YPD4_RS17140 PF12800 4Fe-4S binding domain YPD4_RS17145 PF00384 Molybdopterin oxidoreductase YPD4_RS17145 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_RS17145 PF01568 Molydopterin dinucleotide binding domain YPD4_RS17150 PF00596 Class II Aldolase and Adducin N-terminal domain YPD4_RS17155 PF00455 DeoR C terminal sensor domain YPD4_RS17155 PF08220 DeoR-like helix-turn-helix domain YPD4_RS17170 PF00005 ABC transporter YPD4_RS17175 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS17180 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS17185 PF01261 Xylose isomerase-like TIM barrel YPD4_RS17190 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_RS17190 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_RS17195 PF05683 Fumarase C-terminus YPD4_RS17195 PF05681 Fumarate hydratase (Fumerase) YPD4_RS17205 PF00557 Metallopeptidase family M24 YPD4_RS17225 PF07715 TonB-dependent Receptor Plug Domain YPD4_RS17225 PF00593 TonB dependent receptor YPD4_RS17240 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_RS17255 PF01022 Bacterial regulatory protein, arsR family YPD4_RS17260 PF02040 Arsenical pump membrane protein YPD4_RS17265 PF04198 Putative sugar-binding domain YPD4_RS17265 PF13936 Helix-turn-helix domain YPD4_RS17270 PF02734 DAK2 domain YPD4_RS17275 PF02733 Dak1 domain YPD4_RS17285 PF00107 Zinc-binding dehydrogenase YPD4_RS17285 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_RS17290 PF02502 Ribose/Galactose Isomerase YPD4_RS17300 PF00488 MutS domain V YPD4_RS17300 PF05188 MutS domain II YPD4_RS17300 PF01624 MutS domain I YPD4_RS17300 PF05192 MutS domain III YPD4_RS17300 PF05190 MutS family domain IV YPD4_RS17305 PF04545 Sigma-70, region 4 YPD4_RS17305 PF04542 Sigma-70 region 2 YPD4_RS17305 PF00140 Sigma-70 factor, region 1.2 YPD4_RS17305 PF04539 Sigma-70 region 3 YPD4_RS17310 PF01551 Peptidase family M23 YPD4_RS17310 PF01476 LysM domain YPD4_RS17320 PF01975 Survival protein SurE YPD4_RS17325 PF01142 tRNA pseudouridine synthase D (TruD) YPD4_RS17330 PF02542 YgbB family YPD4_RS17335 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPD4_RS17340 PF04977 Septum formation initiator YPD4_RS17345 PF12084 Protein of unknown function (DUF3561) YPD4_RS17355 PF00009 Elongation factor Tu GTP binding domain YPD4_RS17360 PF01507 Phosphoadenosine phosphosulfate reductase family YPD4_RS17365 PF14824 Sirohaem biosynthesis protein central YPD4_RS17365 PF10414 Sirohaem synthase dimerisation region YPD4_RS17365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPD4_RS17390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPD4_RS17390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPD4_RS17395 PF00258 Flavodoxin YPD4_RS17395 PF00667 FAD binding domain YPD4_RS17395 PF00175 Oxidoreductase NAD-binding domain YPD4_RS17400 PF01242 6-pyruvoyl tetrahydropterin synthase YPD4_RS17405 PF04055 Radical SAM superfamily YPD4_RS17410 PF00080 Copper/zinc superoxide dismutase (SODC) YPD4_RS17415 PF00113 Enolase, C-terminal TIM barrel domain YPD4_RS17415 PF03952 Enolase, N-terminal domain YPD4_RS17420 PF06418 CTP synthase N-terminus YPD4_RS17420 PF00117 Glutamine amidotransferase class-I YPD4_RS17425 PF03819 MazG nucleotide pyrophosphohydrolase domain YPD4_RS17435 PF13291 ACT domain YPD4_RS17435 PF04607 Region found in RelA / SpoT proteins YPD4_RS17435 PF02824 TGS domain YPD4_RS17440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS17440 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPD4_RS17440 PF00072 Response regulator receiver domain YPD4_RS17440 PF01627 Hpt domain YPD4_RS17440 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS17440 PF00672 HAMP domain YPD4_RS17450 PF01966 HD domain YPD4_RS17450 PF13286 Phosphohydrolase-associated domain YPD4_RS17455 PF01048 Phosphorylase superfamily YPD4_RS17465 PF03458 UPF0126 domain YPD4_RS17470 PF01521 Iron-sulphur cluster biosynthesis YPD4_RS17475 PF00654 Voltage gated chloride channel YPD4_RS17480 PF00202 Aminotransferase class-III YPD4_RS17485 PF01032 FecCD transport family YPD4_RS17490 PF01497 Periplasmic binding protein YPD4_RS17500 PF00005 ABC transporter YPD4_RS17505 PF14814 Bifunctional transglycosylase second domain YPD4_RS17505 PF00905 Penicillin binding protein transpeptidase domain YPD4_RS17505 PF00912 Transglycosylase YPD4_RS17505 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPD4_RS17510 PF00270 DEAD/DEAH box helicase YPD4_RS17510 PF00271 Helicase conserved C-terminal domain YPD4_RS17510 PF08482 ATP-dependent helicase C-terminal YPD4_RS17510 PF04408 Helicase associated domain (HA2) YPD4_RS17515 PF02834 LigT like Phosphoesterase YPD4_RS17520 PF03749 Sugar fermentation stimulation protein RE domain YPD4_RS17520 PF17746 SfsA N-terminal OB domain YPD4_RS17525 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPD4_RS17530 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPD4_RS17535 PF12627 Probable RNA and SrmB- binding site of polymerase A YPD4_RS17535 PF01743 Poly A polymerase head domain YPD4_RS17535 PF12626 Polymerase A arginine-rich C-terminus YPD4_RS17540 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPD4_RS17545 PF02548 Ketopantoate hydroxymethyltransferase YPD4_RS17550 PF02569 Pantoate-beta-alanine ligase YPD4_RS17555 PF02261 Aspartate decarboxylase YPD4_RS17565 PF01061 ABC-2 type transporter YPD4_RS17570 PF00005 ABC transporter YPD4_RS17575 PF00484 Carbonic anhydrase YPD4_RS17580 PF00156 Phosphoribosyl transferase domain YPD4_RS17585 PF07731 Multicopper oxidase YPD4_RS17585 PF00394 Multicopper oxidase YPD4_RS17585 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPD4_RS17585 PF07732 Multicopper oxidase YPD4_RS17590 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPD4_RS17595 PF17284 Spermidine synthase tetramerisation domain YPD4_RS17600 PF02675 S-adenosylmethionine decarboxylase YPD4_RS17605 PF00892 EamA-like transporter family YPD4_RS17610 PF06062 Uncharacterised protein family (UPF0231) YPD4_RS17615 PF11791 Aconitate B N-terminal domain YPD4_RS17615 PF06434 Aconitate hydratase 2 N-terminus YPD4_RS17615 PF00330 Aconitase family (aconitate hydratase) YPD4_RS17630 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_RS17630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD4_RS17635 PF02817 e3 binding domain YPD4_RS17635 PF00364 Biotin-requiring enzyme YPD4_RS17635 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPD4_RS17640 PF17831 Pyruvate dehydrogenase E1 component middle domain YPD4_RS17640 PF00456 Transketolase, thiamine diphosphate binding domain YPD4_RS17645 PF07729 FCD domain YPD4_RS17645 PF00392 Bacterial regulatory proteins, gntR family YPD4_RS17650 PF00324 Amino acid permease YPD4_RS17655 PF17113 Regulatory signalling modulator protein AmpE YPD4_RS17660 PF01510 N-acetylmuramoyl-L-alanine amidase YPD4_RS17665 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPD4_RS17665 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPD4_RS17670 PF07963 Prokaryotic N-terminal methylation motif YPD4_RS17675 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPD4_RS17675 PF00437 Type II/IV secretion system protein YPD4_RS17680 PF00482 Type II secretion system (T2SS), protein F YPD4_RS17685 PF00478 IMP dehydrogenase / GMP reductase domain YPD4_RS17695 PF01121 Dephospho-CoA kinase YPD4_RS17700 PF07072 Cell division protein YPD4_RS17705 PF03884 DNA gyrase inhibitor YacG YPD4_RS17715 PF00665 Integrase core domain YPD4_RS17715 PF02796 Helix-turn-helix domain of resolvase YPD4_RS17720 PF01695 IstB-like ATP binding protein YPD4_RS17725 PF08676 MutL C terminal dimerisation domain YPD4_RS17725 PF01119 DNA mismatch repair protein, C-terminal domain YPD4_RS17735 PF13356 Arm DNA-binding domain YPD4_RS17735 PF00589 Phage integrase family YPD4_RS17745 PF03739 Lipopolysaccharide export system permease LptF/LptG YPD4_RS17755 PF00883 Cytosol aminopeptidase family, catalytic domain YPD4_RS17755 PF02789 Cytosol aminopeptidase family, N-terminal domain YPD4_RS17760 PF04364 DNA polymerase III chi subunit, HolC YPD4_RS17765 PF00133 tRNA synthetases class I (I, L, M and V) YPD4_RS17765 PF08264 Anticodon-binding domain of tRNA YPD4_RS17765 PF10458 Valyl tRNA synthetase tRNA binding arm YPD4_RS17770 PF00583 Acetyltransferase (GNAT) family YPD4_RS17775 PF06877 Regulator of ribonuclease activity B YPD4_RS17780 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPD4_RS17780 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPD4_RS17785 PF04074 YhcH/YjgK/YiaL YPD4_RS17795 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS17800 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS17800 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_RS17805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_RS17805 PF00005 ABC transporter YPD4_RS17810 PF00005 ABC transporter YPD4_RS17810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_RS17815 PF03477 ATP cone domain YPD4_RS17815 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPD4_RS17825 PF07702 UTRA domain YPD4_RS17825 PF00392 Bacterial regulatory proteins, gntR family YPD4_RS17830 PF06754 Phosphonate metabolism protein PhnG YPD4_RS17835 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPD4_RS17840 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPD4_RS17845 PF06007 Phosphonate metabolism protein PhnJ YPD4_RS17850 PF00005 ABC transporter YPD4_RS17855 PF00005 ABC transporter YPD4_RS17860 PF07969 Amidohydrolase family YPD4_RS17870 PF12706 Beta-lactamase superfamily domain YPD4_RS17875 PF13460 NAD(P)H-binding YPD4_RS17890 PF17912 MalK OB fold domain YPD4_RS17890 PF03459 TOBE domain YPD4_RS17890 PF00005 ABC transporter YPD4_RS17895 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS17900 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS17905 PF13416 Bacterial extracellular solute-binding protein YPD4_RS17920 PF01541 GIY-YIG catalytic domain YPD4_RS17925 PF13508 Acetyltransferase (GNAT) domain YPD4_RS17930 PF02036 SCP-2 sterol transfer family YPD4_RS17940 PF01136 Peptidase family U32 YPD4_RS17945 PF01136 Peptidase family U32 YPD4_RS17950 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPD4_RS17950 PF02321 Outer membrane efflux protein YPD4_RS17955 PF00873 AcrB/AcrD/AcrF family YPD4_RS17960 PF00529 HlyD membrane-fusion protein of T1SS YPD4_RS17960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPD4_RS17965 PF00296 Luciferase-like monooxygenase YPD4_RS17970 PF01381 Helix-turn-helix YPD4_RS17985 PF12343 Cold shock protein DEAD box A YPD4_RS17985 PF00270 DEAD/DEAH box helicase YPD4_RS17985 PF00271 Helicase conserved C-terminal domain YPD4_RS17985 PF03880 DbpA RNA binding domain YPD4_RS17990 PF07719 Tetratricopeptide repeat YPD4_RS17990 PF13181 Tetratricopeptide repeat YPD4_RS17995 PF00575 S1 RNA binding domain YPD4_RS17995 PF01138 3' exoribonuclease family, domain 1 YPD4_RS17995 PF00013 KH domain YPD4_RS17995 PF03725 3' exoribonuclease family, domain 2 YPD4_RS17995 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPD4_RS18000 PF00665 Integrase core domain YPD4_RS18000 PF13333 Integrase core domain YPD4_RS18000 PF13276 HTH-like domain YPD4_RS18010 PF05947 Type VI secretion system, TssF YPD4_RS18030 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPD4_RS18040 PF07724 AAA domain (Cdc48 subfamily) YPD4_RS18040 PF00004 ATPase family associated with various cellular activities (AAA) YPD4_RS18040 PF10431 C-terminal, D2-small domain, of ClpB protein YPD4_RS18040 PF17871 AAA lid domain YPD4_RS18075 PF04717 Type VI secretion system, phage-baseplate injector YPD4_RS18090 PF03527 RHS protein YPD4_RS18090 PF05593 RHS Repeat YPD4_RS18120 PF04717 Type VI secretion system, phage-baseplate injector YPD4_RS18130 PF05593 RHS Repeat YPD4_RS18130 PF03527 RHS protein YPD4_RS18145 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPD4_RS18145 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPD4_RS18150 PF12833 Helix-turn-helix domain YPD4_RS18150 PF02311 AraC-like ligand binding domain YPD4_RS18155 PF05025 RbsD / FucU transport protein family YPD4_RS18160 PF00294 pfkB family carbohydrate kinase YPD4_RS18165 PF01791 DeoC/LacD family aldolase YPD4_RS18170 PF03358 NADPH-dependent FMN reductase YPD4_RS18175 PF09084 NMT1/THI5 like YPD4_RS18180 PF00296 Luciferase-like monooxygenase YPD4_RS18185 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS18190 PF00005 ABC transporter YPD4_RS18195 PF04221 RelB antitoxin YPD4_RS18200 PF00860 Permease family YPD4_RS18205 PF00999 Sodium/hydrogen exchanger family YPD4_RS18215 PF03279 Bacterial lipid A biosynthesis acyltransferase YPD4_RS18225 PF00005 ABC transporter YPD4_RS18230 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS18240 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_RS18240 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_RS18245 PF01380 SIS domain YPD4_RS18245 PF00571 CBS domain YPD4_RS18250 PF02798 Glutathione S-transferase, N-terminal domain YPD4_RS18275 PF00313 'Cold-shock' DNA-binding domain YPD4_RS18280 PF00313 'Cold-shock' DNA-binding domain YPD4_RS18290 PF05433 Glycine zipper 2TM domain YPD4_RS18295 PF00753 Metallo-beta-lactamase superfamily YPD4_RS18300 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPD4_RS18300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPD4_RS18305 PF02627 Carboxymuconolactone decarboxylase family YPD4_RS18325 PF02954 Bacterial regulatory protein, Fis family YPD4_RS18330 PF01207 Dihydrouridine synthase (Dus) YPD4_RS18340 PF00474 Sodium:solute symporter family YPD4_RS18345 PF06196 Protein of unknown function (DUF997) YPD4_RS18350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPD4_RS18350 PF02785 Biotin carboxylase C-terminal domain YPD4_RS18350 PF00289 Biotin carboxylase, N-terminal domain YPD4_RS18355 PF00364 Biotin-requiring enzyme YPD4_RS18360 PF01220 Dehydroquinase class II YPD4_RS18365 PF01794 Ferric reductase like transmembrane component YPD4_RS18370 PF00174 Oxidoreductase molybdopterin binding domain YPD4_RS18375 PF00107 Zinc-binding dehydrogenase YPD4_RS18375 PF08240 Alcohol dehydrogenase GroES-like domain YPD4_RS18380 PF00990 Diguanylate cyclase, GGDEF domain YPD4_RS18380 PF17157 Gammaproteobacterial periplasmic sensor domain YPD4_RS18380 PF00563 EAL domain YPD4_RS18390 PF04085 rod shape-determining protein MreC YPD4_RS18395 PF04093 rod shape-determining protein MreD YPD4_RS18400 PF02545 Maf-like protein YPD4_RS18405 PF10150 Ribonuclease E/G family YPD4_RS18405 PF00575 S1 RNA binding domain YPD4_RS18410 PF13502 AsmA-like C-terminal region YPD4_RS18410 PF13116 Protein of unknown function YPD4_RS18415 PF00795 Carbon-nitrogen hydrolase YPD4_RS18420 PF01523 Putative modulator of DNA gyrase YPD4_RS18425 PF14431 YwqJ-like deaminase YPD4_RS18425 PF18807 Tripartite Tc toxins repeat YPD4_RS18430 PF05785 Rho-activating domain of cytotoxic necrotizing factor YPD4_RS18430 PF18807 Tripartite Tc toxins repeat YPD4_RS18455 PF12256 Insecticide toxin TcdB middle/N-terminal region YPD4_RS18455 PF03534 Salmonella virulence plasmid 65kDa B protein YPD4_RS18455 PF12255 Insecticide toxin TcdB middle/C-terminal region YPD4_RS18460 PF18413 Neuraminidase-like domain YPD4_RS18460 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPD4_RS18475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS18475 PF03466 LysR substrate binding domain YPD4_RS18480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS18480 PF03466 LysR substrate binding domain YPD4_RS18485 PF07869 Protein of unknown function (DUF1656) YPD4_RS18490 PF13533 Biotin-lipoyl like YPD4_RS18495 PF04632 Fusaric acid resistance protein family YPD4_RS18500 PF00171 Aldehyde dehydrogenase family YPD4_RS18505 PF00171 Aldehyde dehydrogenase family YPD4_RS18515 PF01337 Barstar (barnase inhibitor) YPD4_RS18520 PF04751 Protein of unknown function (DUF615) YPD4_RS18525 PF01523 Putative modulator of DNA gyrase YPD4_RS18535 PF07361 Cytochrome b562 YPD4_RS18540 PF14760 Rnk N-terminus YPD4_RS18540 PF01272 Transcription elongation factor, GreA/GreB, C-term YPD4_RS18545 PF11941 Domain of unknown function (DUF3459) YPD4_RS18545 PF00128 Alpha amylase, catalytic domain YPD4_RS18550 PF00367 phosphotransferase system, EIIB YPD4_RS18550 PF02378 Phosphotransferase system, EIIC YPD4_RS18555 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS18565 PF01042 Endoribonuclease L-PSP YPD4_RS18570 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPD4_RS18570 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPD4_RS18575 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPD4_RS18575 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPD4_RS18580 PF00381 PTS HPr component phosphorylation site YPD4_RS18585 PF03668 P-loop ATPase protein family YPD4_RS18590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPD4_RS18600 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPD4_RS18600 PF04963 Sigma-54 factor, core binding domain YPD4_RS18600 PF04552 Sigma-54, DNA binding domain YPD4_RS18605 PF00005 ABC transporter YPD4_RS18605 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPD4_RS18610 PF03968 OstA-like protein YPD4_RS18615 PF06835 Lipopolysaccharide-assembly, LptC-related YPD4_RS18625 PF00571 CBS domain YPD4_RS18625 PF01380 SIS domain YPD4_RS18630 PF01699 Sodium/calcium exchanger protein YPD4_RS18635 PF00005 ABC transporter YPD4_RS18640 PF02405 Permease MlaE YPD4_RS18645 PF02470 MlaD protein YPD4_RS18650 PF05494 MlaC protein YPD4_RS18655 PF13466 STAS domain YPD4_RS18660 PF01722 BolA-like protein YPD4_RS18665 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPD4_RS18670 PF13180 PDZ domain YPD4_RS18675 PF01797 Transposase IS200 like YPD4_RS18680 PF00595 PDZ domain YPD4_RS18680 PF13180 PDZ domain YPD4_RS18685 PF06295 Protein of unknown function (DUF1043) YPD4_RS18690 PF03969 AFG1-like ATPase YPD4_RS18695 PF00572 Ribosomal protein L13 YPD4_RS18700 PF00380 Ribosomal protein S9/S16 YPD4_RS18710 PF02798 Glutathione S-transferase, N-terminal domain YPD4_RS18710 PF00043 Glutathione S-transferase, C-terminal domain YPD4_RS18715 PF04386 Stringent starvation protein B YPD4_RS18725 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_RS18725 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPD4_RS18730 PF01645 Conserved region in glutamate synthase YPD4_RS18730 PF04898 Glutamate synthase central domain YPD4_RS18730 PF00310 Glutamine amidotransferases class-II YPD4_RS18730 PF01493 GXGXG motif YPD4_RS18735 PF16199 Radical_SAM C-terminal domain YPD4_RS18735 PF04055 Radical SAM superfamily YPD4_RS18745 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS18745 PF00989 PAS fold YPD4_RS18745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS18745 PF00072 Response regulator receiver domain YPD4_RS18745 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPD4_RS18745 PF01627 Hpt domain YPD4_RS18760 PF00912 Transglycosylase YPD4_RS18765 PF04972 BON domain YPD4_RS18770 PF13580 SIS domain YPD4_RS18775 PF02021 Uncharacterised protein family UPF0102 YPD4_RS18780 PF04348 LppC putative lipoprotein YPD4_RS18785 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPD4_RS18790 PF02678 Pirin YPD4_RS18790 PF17954 Quercetinase C-terminal cupin domain YPD4_RS18795 PF03466 LysR substrate binding domain YPD4_RS18795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS18800 PF13409 Glutathione S-transferase, N-terminal domain YPD4_RS18805 PF01695 IstB-like ATP binding protein YPD4_RS18810 PF01695 IstB-like ATP binding protein YPD4_RS18815 PF00665 Integrase core domain YPD4_RS18815 PF02796 Helix-turn-helix domain of resolvase YPD4_RS18820 PF00326 Prolyl oligopeptidase family YPD4_RS18830 PF01250 Ribosomal protein S6 YPD4_RS18835 PF00436 Single-strand binding protein family YPD4_RS18840 PF01084 Ribosomal protein S18 YPD4_RS18845 PF03948 Ribosomal protein L9, C-terminal domain YPD4_RS18845 PF01281 Ribosomal protein L9, N-terminal domain YPD4_RS18855 PF01797 Transposase IS200 like YPD4_RS18870 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPD4_RS18870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPD4_RS18875 PF01814 Hemerythrin HHE cation binding domain YPD4_RS18875 PF04405 Domain of Unknown function (DUF542) YPD4_RS18885 PF00459 Inositol monophosphatase family YPD4_RS18890 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPD4_RS18895 PF06526 Protein of unknown function (DUF1107) YPD4_RS18900 PF03471 Transporter associated domain YPD4_RS18900 PF00571 CBS domain YPD4_RS18900 PF01595 Cyclin M transmembrane N-terminal domain YPD4_RS18905 PF01625 Peptide methionine sulfoxide reductase YPD4_RS18910 PF01103 Surface antigen YPD4_RS18910 PF07244 Surface antigen variable number repeat YPD4_RS18910 PF17243 POTRA domain TamA domain 1 YPD4_RS18915 PF04357 TamB, inner membrane protein subunit of TAM complex YPD4_RS18920 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPD4_RS18925 PF00719 Inorganic pyrophosphatase YPD4_RS18930 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPD4_RS18935 PF01225 Mur ligase family, catalytic domain YPD4_RS18935 PF02875 Mur ligase family, glutamate ligase domain YPD4_RS18935 PF08245 Mur ligase middle domain YPD4_RS18950 PF02863 Arginine repressor, C-terminal domain YPD4_RS18950 PF01316 Arginine repressor, DNA binding domain YPD4_RS18955 PF00056 lactate/malate dehydrogenase, NAD binding domain YPD4_RS18955 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPD4_RS18960 PF13693 Winged helix-turn-helix DNA-binding YPD4_RS18970 PF00348 Polyprenyl synthetase YPD4_RS18975 PF00829 Ribosomal prokaryotic L21 protein YPD4_RS18980 PF01016 Ribosomal L27 protein YPD4_RS18985 PF00892 EamA-like transporter family YPD4_RS18990 PF01018 GTP1/OBG YPD4_RS18990 PF01926 50S ribosome-binding GTPase YPD4_RS18995 PF00672 HAMP domain YPD4_RS18995 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS18995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS19000 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS19000 PF00072 Response regulator receiver domain YPD4_RS19005 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPD4_RS19010 PF01272 Transcription elongation factor, GreA/GreB, C-term YPD4_RS19010 PF03449 Transcription elongation factor, N-terminal YPD4_RS19015 PF01985 CRS1 / YhbY (CRM) domain YPD4_RS19020 PF01728 FtsJ-like methyltransferase YPD4_RS19030 PF00809 Pterin binding enzyme YPD4_RS19035 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPD4_RS19035 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPD4_RS19035 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPD4_RS19035 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPD4_RS19040 PF03840 Preprotein translocase SecG subunit YPD4_RS19055 PF02576 RimP N-terminal domain YPD4_RS19055 PF17384 RimP C-terminal SH3 domain YPD4_RS19060 PF13184 NusA-like KH domain YPD4_RS19060 PF08529 NusA N-terminal domain YPD4_RS19060 PF00575 S1 RNA binding domain YPD4_RS19065 PF08364 Bacterial translation initiation factor IF-2 associated region YPD4_RS19065 PF04760 Translation initiation factor IF-2, N-terminal region YPD4_RS19065 PF03144 Elongation factor Tu domain 2 YPD4_RS19065 PF00009 Elongation factor Tu GTP binding domain YPD4_RS19065 PF11987 Translation-initiation factor 2 YPD4_RS19070 PF02033 Ribosome-binding factor A YPD4_RS19075 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPD4_RS19075 PF09157 Pseudouridine synthase II TruB, C-terminal YPD4_RS19075 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPD4_RS19080 PF00312 Ribosomal protein S15 YPD4_RS19090 PF13276 HTH-like domain YPD4_RS19090 PF13333 Integrase core domain YPD4_RS19090 PF00665 Integrase core domain YPD4_RS19095 PF05947 Type VI secretion system, TssF YPD4_RS19105 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPD4_RS19115 PF05638 Type VI secretion system effector, Hcp YPD4_RS19125 PF07148 Maltose operon periplasmic protein precursor (MalM) YPD4_RS19135 PF17912 MalK OB fold domain YPD4_RS19135 PF00005 ABC transporter YPD4_RS19145 PF01547 Bacterial extracellular solute-binding protein YPD4_RS19150 PF14785 Maltose transport system permease protein MalF P2 domain YPD4_RS19150 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS19155 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS19160 PF06146 Phosphate-starvation-inducible E YPD4_RS19165 PF00342 Phosphoglucose isomerase YPD4_RS19170 PF00696 Amino acid kinase family YPD4_RS19170 PF01842 ACT domain YPD4_RS19175 PF17287 POTRA domain YPD4_RS19175 PF08479 POTRA domain, ShlB-type YPD4_RS19175 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_RS19180 PF05860 haemagglutination activity domain YPD4_RS19180 PF13332 Hemagglutinin repeat YPD4_RS19185 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPD4_RS19185 PF02607 B12 binding domain YPD4_RS19185 PF02574 Homocysteine S-methyltransferase YPD4_RS19185 PF00809 Pterin binding enzyme YPD4_RS19185 PF02310 B12 binding domain YPD4_RS19190 PF01614 Bacterial transcriptional regulator YPD4_RS19190 PF09339 IclR helix-turn-helix domain YPD4_RS19195 PF09339 IclR helix-turn-helix domain YPD4_RS19195 PF01614 Bacterial transcriptional regulator YPD4_RS19200 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPD4_RS19205 PF00463 Isocitrate lyase family YPD4_RS19210 PF01274 Malate synthase YPD4_RS19215 PF04204 Homoserine O-succinyltransferase YPD4_RS19270 PF02843 Phosphoribosylglycinamide synthetase, C domain YPD4_RS19270 PF02844 Phosphoribosylglycinamide synthetase, N domain YPD4_RS19270 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPD4_RS19275 PF07356 Protein of unknown function (DUF1481) YPD4_RS19280 PF00216 Bacterial DNA-binding protein YPD4_RS19285 PF04222 Protein of unknown function (DUF416) YPD4_RS19290 PF04493 Endonuclease V YPD4_RS19295 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPD4_RS19305 PF00293 NUDIX domain YPD4_RS19305 PF09297 NADH pyrophosphatase zinc ribbon domain YPD4_RS19310 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPD4_RS19320 PF13667 ThiC-associated domain YPD4_RS19320 PF01964 Radical SAM ThiC family YPD4_RS19325 PF02581 Thiamine monophosphate synthase YPD4_RS19330 PF00899 ThiF family YPD4_RS19340 PF05690 Thiazole biosynthesis protein ThiG YPD4_RS19345 PF04055 Radical SAM superfamily YPD4_RS19345 PF06968 Biotin and Thiamin Synthesis associated domain YPD4_RS19360 PF01797 Transposase IS200 like YPD4_RS19365 PF04998 RNA polymerase Rpb1, domain 5 YPD4_RS19365 PF00623 RNA polymerase Rpb1, domain 2 YPD4_RS19365 PF04983 RNA polymerase Rpb1, domain 3 YPD4_RS19365 PF04997 RNA polymerase Rpb1, domain 1 YPD4_RS19365 PF05000 RNA polymerase Rpb1, domain 4 YPD4_RS19370 PF10385 RNA polymerase beta subunit external 1 domain YPD4_RS19370 PF00562 RNA polymerase Rpb2, domain 6 YPD4_RS19370 PF04560 RNA polymerase Rpb2, domain 7 YPD4_RS19370 PF04565 RNA polymerase Rpb2, domain 3 YPD4_RS19370 PF04561 RNA polymerase Rpb2, domain 2 YPD4_RS19370 PF04563 RNA polymerase beta subunit YPD4_RS19375 PF00542 Ribosomal protein L7/L12 C-terminal domain YPD4_RS19375 PF16320 Ribosomal protein L7/L12 dimerisation domain YPD4_RS19380 PF00466 Ribosomal protein L10 YPD4_RS19385 PF00687 Ribosomal protein L1p/L10e family YPD4_RS19390 PF03946 Ribosomal protein L11, N-terminal domain YPD4_RS19390 PF00298 Ribosomal protein L11, RNA binding domain YPD4_RS19395 PF00467 KOW motif YPD4_RS19395 PF02357 Transcription termination factor nusG YPD4_RS19405 PF00009 Elongation factor Tu GTP binding domain YPD4_RS19405 PF03144 Elongation factor Tu domain 2 YPD4_RS19405 PF03143 Elongation factor Tu C-terminal domain YPD4_RS19430 PF01695 IstB-like ATP binding protein YPD4_RS19435 PF02796 Helix-turn-helix domain of resolvase YPD4_RS19435 PF00665 Integrase core domain YPD4_RS19440 PF13673 Acetyltransferase (GNAT) domain YPD4_RS19445 PF00485 Phosphoribulokinase / Uridine kinase family YPD4_RS19450 PF03099 Biotin/lipoate A/B protein ligase family YPD4_RS19450 PF08279 HTH domain YPD4_RS19450 PF02237 Biotin protein ligase C terminal domain YPD4_RS19455 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPD4_RS19455 PF01565 FAD binding domain YPD4_RS19485 PF12724 Flavodoxin domain YPD4_RS19490 PF02386 Cation transport protein YPD4_RS19495 PF01205 Uncharacterized protein family UPF0029 YPD4_RS19495 PF09186 Domain of unknown function (DUF1949) YPD4_RS19505 PF09186 Domain of unknown function (DUF1949) YPD4_RS19505 PF01205 Uncharacterized protein family UPF0029 YPD4_RS19510 PF00557 Metallopeptidase family M24 YPD4_RS19515 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPD4_RS19515 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPD4_RS19515 PF00378 Enoyl-CoA hydratase/isomerase YPD4_RS19520 PF02803 Thiolase, C-terminal domain YPD4_RS19520 PF00108 Thiolase, N-terminal domain YPD4_RS19525 PF00970 Oxidoreductase FAD-binding domain YPD4_RS19525 PF00175 Oxidoreductase NAD-binding domain YPD4_RS19530 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPD4_RS19535 PF02357 Transcription termination factor nusG YPD4_RS19540 PF00490 Delta-aminolevulinic acid dehydratase YPD4_RS19545 PF01026 TatD related DNase YPD4_RS19550 PF01695 IstB-like ATP binding protein YPD4_RS19555 PF02796 Helix-turn-helix domain of resolvase YPD4_RS19555 PF00665 Integrase core domain YPD4_RS19560 PF01026 TatD related DNase YPD4_RS19565 PF00902 Sec-independent protein translocase protein (TatC) YPD4_RS19575 PF02416 mttA/Hcf106 family YPD4_RS19580 PF03109 ABC1 family YPD4_RS19585 PF02036 SCP-2 sterol transfer family YPD4_RS19590 PF01209 ubiE/COQ5 methyltransferase family YPD4_RS19595 PF02646 RmuC family YPD4_RS19600 PF09335 SNARE associated Golgi protein YPD4_RS19605 PF02554 Carbon starvation protein CstA YPD4_RS19605 PF13722 5TM C-terminal transporter carbon starvation CstA YPD4_RS19615 PF01048 Phosphorylase superfamily YPD4_RS19620 PF01738 Dienelactone hydrolase family YPD4_RS19625 PF08267 Cobalamin-independent synthase, N-terminal domain YPD4_RS19625 PF01717 Cobalamin-independent synthase, Catalytic domain YPD4_RS19630 PF03466 LysR substrate binding domain YPD4_RS19630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS19635 PF00892 EamA-like transporter family YPD4_RS19640 PF03547 Membrane transport protein YPD4_RS19645 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD4_RS19650 PF17912 MalK OB fold domain YPD4_RS19650 PF00005 ABC transporter YPD4_RS19655 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS19660 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS19665 PF13416 Bacterial extracellular solute-binding protein YPD4_RS19705 PF00005 ABC transporter YPD4_RS19710 PF00005 ABC transporter YPD4_RS19710 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPD4_RS19715 PF11862 Domain of unknown function (DUF3382) YPD4_RS19715 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS19720 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS19725 PF13458 Periplasmic binding protein YPD4_RS19730 PF12568 Acetyltransferase (GNAT) domain, PanZ YPD4_RS19735 PF01797 Transposase IS200 like YPD4_RS19745 PF04542 Sigma-70 region 2 YPD4_RS19745 PF04545 Sigma-70, region 4 YPD4_RS19745 PF00140 Sigma-70 factor, region 1.2 YPD4_RS19750 PF02687 FtsX-like permease family YPD4_RS19750 PF18075 FtsX extracellular domain YPD4_RS19755 PF00005 ABC transporter YPD4_RS19760 PF02881 SRP54-type protein, helical bundle domain YPD4_RS19760 PF00448 SRP54-type protein, GTPase domain YPD4_RS19760 PF02881 SRP54-type protein, helical bundle domain YPD4_RS19760 PF00448 SRP54-type protein, GTPase domain YPD4_RS19775 PF06611 Protein of unknown function (DUF1145) YPD4_RS19790 PF07947 YhhN family YPD4_RS19795 PF00403 Heavy-metal-associated domain YPD4_RS19800 PF01206 Sulfurtransferase TusA YPD4_RS19805 PF02592 Putative vitamin uptake transporter YPD4_RS19810 PF08786 DcrB YPD4_RS19815 PF13183 4Fe-4S dicluster domain YPD4_RS19815 PF02754 Cysteine-rich domain YPD4_RS19820 PF00890 FAD binding domain YPD4_RS19825 PF01266 FAD dependent oxidoreductase YPD4_RS19825 PF04324 BFD-like [2Fe-2S] binding domain YPD4_RS19835 PF03009 Glycerophosphoryl diester phosphodiesterase family YPD4_RS19850 PF12146 Serine aminopeptidase, S33 YPD4_RS19860 PF01810 LysE type translocator YPD4_RS19865 PF00271 Helicase conserved C-terminal domain YPD4_RS19865 PF00570 HRDC domain YPD4_RS19865 PF16124 RecQ zinc-binding YPD4_RS19865 PF09382 RQC domain YPD4_RS19865 PF00270 DEAD/DEAH box helicase YPD4_RS19870 PF02253 Phospholipase A1 YPD4_RS19875 PF03061 Thioesterase superfamily YPD4_RS19885 PF01544 CorA-like Mg2+ transporter protein YPD4_RS19890 PF09370 Phosphoenolpyruvate hydrolase-like YPD4_RS19905 PF00580 UvrD/REP helicase N-terminal domain YPD4_RS19905 PF13361 UvrD-like helicase C-terminal domain YPD4_RS19910 PF13419 Haloacid dehalogenase-like hydrolase YPD4_RS19915 PF00589 Phage integrase family YPD4_RS19915 PF02899 Phage integrase, N-terminal SAM-like domain YPD4_RS19920 PF04340 Protein of unknown function, DUF484 YPD4_RS19925 PF01678 Diaminopimelate epimerase YPD4_RS19930 PF13627 Prokaryotic lipoprotein-attachment site YPD4_RS19935 PF01491 Frataxin-like domain YPD4_RS19940 PF01295 Adenylate cyclase, class-I YPD4_RS19940 PF12633 Adenylate cyclase NT domain YPD4_RS19950 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPD4_RS19950 PF03900 Porphobilinogen deaminase, C-terminal domain YPD4_RS19955 PF02602 Uroporphyrinogen-III synthase HemD YPD4_RS19960 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPD4_RS19965 PF07219 HemY protein N-terminus YPD4_RS19965 PF07719 Tetratricopeptide repeat YPD4_RS19995 PF00324 Amino acid permease YPD4_RS20000 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPD4_RS20005 PF06899 WzyE protein, O-antigen assembly polymerase YPD4_RS20010 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPD4_RS20015 PF01943 Polysaccharide biosynthesis protein YPD4_RS20020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPD4_RS20030 PF00483 Nucleotidyl transferase YPD4_RS20035 PF16363 GDP-mannose 4,6 dehydratase YPD4_RS20040 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPD4_RS20040 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPD4_RS20040 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPD4_RS20045 PF02350 UDP-N-acetylglucosamine 2-epimerase YPD4_RS20050 PF02706 Chain length determinant protein YPD4_RS20055 PF00953 Glycosyl transferase family 4 YPD4_RS20060 PF07497 Rho termination factor, RNA-binding domain YPD4_RS20060 PF07498 Rho termination factor, N-terminal domain YPD4_RS20060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_RS20065 PF00085 Thioredoxin YPD4_RS20070 PF00270 DEAD/DEAH box helicase YPD4_RS20070 PF00271 Helicase conserved C-terminal domain YPD4_RS20075 PF02541 Ppx/GppA phosphatase family YPD4_RS20080 PF02541 Ppx/GppA phosphatase family YPD4_RS20085 PF13361 UvrD-like helicase C-terminal domain YPD4_RS20085 PF00580 UvrD/REP helicase N-terminal domain YPD4_RS20105 PF00872 Transposase, Mutator family YPD4_RS20120 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_RS20120 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS20125 PF13953 PapC C-terminal domain YPD4_RS20125 PF00577 Outer membrane usher protein YPD4_RS20125 PF13954 PapC N-terminal domain YPD4_RS20135 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_RS20135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS20145 PF01320 Colicin immunity protein / pyocin immunity protein YPD4_RS20170 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPD4_RS20170 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPD4_RS20175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS20175 PF03466 LysR substrate binding domain YPD4_RS20210 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_RS20210 PF00585 C-terminal regulatory domain of Threonine dehydratase YPD4_RS20215 PF00920 Dehydratase family YPD4_RS20220 PF01063 Amino-transferase class IV YPD4_RS20230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPD4_RS20230 PF00205 Thiamine pyrophosphate enzyme, central domain YPD4_RS20230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPD4_RS20235 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPD4_RS20235 PF01078 Magnesium chelatase, subunit ChlI YPD4_RS20240 PF04219 Protein of unknown function, DUF YPD4_RS20245 PF03466 LysR substrate binding domain YPD4_RS20245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS20250 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS20255 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS20260 PF00005 ABC transporter YPD4_RS20265 PF13407 Periplasmic binding protein domain YPD4_RS20305 PF01177 Asp/Glu/Hydantoin racemase YPD4_RS20310 PF00593 TonB dependent receptor YPD4_RS20310 PF07715 TonB-dependent Receptor Plug Domain YPD4_RS20320 PF05958 tRNA (Uracil-5-)-methyltransferase YPD4_RS20325 PF07226 Protein of unknown function (DUF1422) YPD4_RS20330 PF00440 Bacterial regulatory proteins, tetR family YPD4_RS20335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD4_RS20335 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_RS20340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPD4_RS20340 PF03466 LysR substrate binding domain YPD4_RS20345 PF08534 Redoxin YPD4_RS20345 PF00462 Glutaredoxin YPD4_RS20350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD4_RS20350 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_RS20355 PF03544 Gram-negative bacterial TonB protein C-terminal YPD4_RS20360 PF00529 HlyD membrane-fusion protein of T1SS YPD4_RS20365 PF00005 ABC transporter YPD4_RS20365 PF00664 ABC transporter transmembrane region YPD4_RS20375 PF00593 TonB dependent receptor YPD4_RS20375 PF07715 TonB-dependent Receptor Plug Domain YPD4_RS20385 PF00206 Lyase YPD4_RS20385 PF14698 Argininosuccinate lyase C-terminal YPD4_RS20395 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPD4_RS20395 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPD4_RS20400 PF07687 Peptidase dimerisation domain YPD4_RS20400 PF01546 Peptidase family M20/M25/M40 YPD4_RS20405 PF00311 Phosphoenolpyruvate carboxylase YPD4_RS20415 PF13333 Integrase core domain YPD4_RS20415 PF13276 HTH-like domain YPD4_RS20415 PF00665 Integrase core domain YPD4_RS20435 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPD4_RS20435 PF01266 FAD dependent oxidoreductase YPD4_RS20440 PF00343 Carbohydrate phosphorylase YPD4_RS20445 PF08323 Starch synthase catalytic domain YPD4_RS20445 PF00534 Glycosyl transferases group 1 YPD4_RS20450 PF00483 Nucleotidyl transferase YPD4_RS20455 PF00128 Alpha amylase, catalytic domain YPD4_RS20455 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPD4_RS20455 PF18390 Glycogen debranching enzyme C-terminal domain YPD4_RS20460 PF02806 Alpha amylase, C-terminal all-beta domain YPD4_RS20460 PF00128 Alpha amylase, catalytic domain YPD4_RS20460 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPD4_RS20465 PF07694 5TMR of 5TMR-LYT YPD4_RS20465 PF06580 Histidine kinase YPD4_RS20470 PF11924 Inverse autotransporter, beta-domain YPD4_RS20470 PF07979 Intimin C-type lectin domain YPD4_RS20470 PF02369 Bacterial Ig-like domain (group 1) YPD4_RS20470 PF09134 Invasin, domain 3 YPD4_RS20495 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPD4_RS20495 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPD4_RS20500 PF01914 MarC family integral membrane protein YPD4_RS20520 PF01202 Shikimate kinase YPD4_RS20525 PF02447 GntP family permease YPD4_RS20530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPD4_RS20530 PF00356 Bacterial regulatory proteins, lacI family YPD4_RS20535 PF17954 Quercetinase C-terminal cupin domain YPD4_RS20535 PF02678 Pirin YPD4_RS20545 PF00486 Transcriptional regulatory protein, C terminal YPD4_RS20545 PF00072 Response regulator receiver domain YPD4_RS20555 PF01116 Fructose-bisphosphate aldolase class-II YPD4_RS20565 PF13407 Periplasmic binding protein domain YPD4_RS20570 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS20575 PF00005 ABC transporter YPD4_RS20580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS20580 PF08448 PAS fold YPD4_RS20580 PF00512 His Kinase A (phospho-acceptor) domain YPD4_RS20580 PF13188 PAS domain YPD4_RS20580 PF00072 Response regulator receiver domain YPD4_RS20590 PF01384 Phosphate transporter family YPD4_RS20605 PF10625 Universal stress protein B (UspB) YPD4_RS20610 PF00582 Universal stress protein family YPD4_RS20615 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPD4_RS20615 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPD4_RS20620 PF08548 Peptidase M10 serralysin C terminal YPD4_RS20620 PF00413 Matrixin YPD4_RS20620 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPD4_RS20625 PF04445 Putative SAM-dependent methyltransferase YPD4_RS20630 PF01432 Peptidase family M3 YPD4_RS20635 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPD4_RS20640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPD4_RS20640 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPD4_RS20645 PF05651 Putative sugar diacid recognition YPD4_RS20645 PF17853 GGDEF-like domain YPD4_RS20645 PF13556 PucR C-terminal helix-turn-helix domain YPD4_RS20650 PF02447 GntP family permease YPD4_RS20655 PF02595 Glycerate kinase family YPD4_RS20680 PF03631 Virulence factor BrkB YPD4_RS20685 PF02611 CDP-diacylglycerol pyrophosphatase YPD4_RS20690 PF05170 AsmA family YPD4_RS20695 PF00563 EAL domain YPD4_RS20700 PF01361 Tautomerase enzyme YPD4_RS20705 PF00294 pfkB family carbohydrate kinase YPD4_RS20710 PF00675 Insulinase (Peptidase family M16) YPD4_RS20710 PF05193 Peptidase M16 inactive domain YPD4_RS20715 PF00375 Sodium:dicarboxylate symporter family YPD4_RS20725 PF06917 Periplasmic pectate lyase YPD4_RS20730 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPD4_RS20735 PF00672 HAMP domain YPD4_RS20735 PF00990 Diguanylate cyclase, GGDEF domain YPD4_RS20735 PF00563 EAL domain YPD4_RS20735 PF17154 Gammaproteobacterial periplasmic sensor domain YPD4_RS20740 PF01270 Glycosyl hydrolases family 8 YPD4_RS20745 PF00005 ABC transporter YPD4_RS20745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_RS20750 PF00005 ABC transporter YPD4_RS20750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPD4_RS20755 PF12911 N-terminal TM domain of oligopeptide transport permease C YPD4_RS20755 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS20760 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS20765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPD4_RS20775 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPD4_RS20775 PF17287 POTRA domain YPD4_RS20775 PF08479 POTRA domain, ShlB-type YPD4_RS20790 PF07690 Major Facilitator Superfamily YPD4_RS20795 PF05231 MASE1 YPD4_RS20795 PF07730 Histidine kinase YPD4_RS20795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS20800 PF01695 IstB-like ATP binding protein YPD4_RS20805 PF00665 Integrase core domain YPD4_RS20805 PF02796 Helix-turn-helix domain of resolvase YPD4_RS20810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS20810 PF07730 Histidine kinase YPD4_RS20810 PF05231 MASE1 YPD4_RS20815 PF00196 Bacterial regulatory proteins, luxR family YPD4_RS20815 PF00072 Response regulator receiver domain YPD4_RS20820 PF00884 Sulfatase YPD4_RS20820 PF08019 Phosphoethanolamine transferase EptA/EptB YPD4_RS20825 PF12146 Serine aminopeptidase, S33 YPD4_RS20830 PF00324 Amino acid permease YPD4_RS20835 PF00221 Aromatic amino acid lyase YPD4_RS20840 PF17391 Urocanase N-terminal domain YPD4_RS20840 PF17392 Urocanase C-terminal domain YPD4_RS20840 PF01175 Urocanase Rossmann-like domain YPD4_RS20845 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_RS20850 PF00156 Phosphoribosyl transferase domain YPD4_RS20865 PF01497 Periplasmic binding protein YPD4_RS20870 PF01032 FecCD transport family YPD4_RS20875 PF01032 FecCD transport family YPD4_RS20880 PF00005 ABC transporter YPD4_RS20900 PF13737 Transposase DDE domain YPD4_RS20905 PF13737 Transposase DDE domain YPD4_RS20910 PF04606 Ogr/Delta-like zinc finger YPD4_RS20920 PF00589 Phage integrase family YPD4_RS20920 PF14659 Phage integrase, N-terminal SAM-like domain YPD4_RS20920 PF13356 Arm DNA-binding domain YPD4_RS20925 PF12833 Helix-turn-helix domain YPD4_RS20930 PF02653 Branched-chain amino acid transport system / permease component YPD4_RS20935 PF00005 ABC transporter YPD4_RS20940 PF13407 Periplasmic binding protein domain YPD4_RS20950 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPD4_RS20950 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPD4_RS20960 PF02753 Pili assembly chaperone PapD, C-terminal domain YPD4_RS20960 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPD4_RS20975 PF00419 Fimbrial protein YPD4_RS20980 PF01757 Acyltransferase family YPD4_RS20995 PF13276 HTH-like domain YPD4_RS20995 PF13333 Integrase core domain YPD4_RS20995 PF00665 Integrase core domain YPD4_RS21000 PF07690 Major Facilitator Superfamily YPD4_RS21025 PF01526 Tn3 transposase DDE domain YPD4_RS21025 PF13700 Domain of unknown function (DUF4158) YPD4_RS21030 PF09107 Elongation factor SelB, winged helix YPD4_RS21030 PF09106 Elongation factor SelB, winged helix YPD4_RS21030 PF03144 Elongation factor Tu domain 2 YPD4_RS21030 PF00009 Elongation factor Tu GTP binding domain YPD4_RS21035 PF03841 L-seryl-tRNA selenium transferase YPD4_RS21035 PF12390 Selenocysteine synthase N terminal YPD4_RS21040 PF04216 Protein involved in formate dehydrogenase formation YPD4_RS21045 PF01292 Prokaryotic cytochrome b561 YPD4_RS21050 PF13247 4Fe-4S dicluster domain YPD4_RS21050 PF09163 Formate dehydrogenase N, transmembrane YPD4_RS21055 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_RS21055 PF01568 Molydopterin dinucleotide binding domain YPD4_RS21055 PF00384 Molybdopterin oxidoreductase YPD4_RS21060 PF01568 Molydopterin dinucleotide binding domain YPD4_RS21060 PF00384 Molybdopterin oxidoreductase YPD4_RS21060 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPD4_RS21065 PF02634 FdhD/NarQ family YPD4_RS21070 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPD4_RS21070 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPD4_RS21075 PF00672 HAMP domain YPD4_RS21075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPD4_RS21075 PF02203 Tar ligand binding domain homologue YPD4_RS21090 PF10928 Protein of unknown function (DUF2810) YPD4_RS21095 PF05068 Mannitol repressor YPD4_RS21100 PF01232 Mannitol dehydrogenase Rossmann domain YPD4_RS21100 PF08125 Mannitol dehydrogenase C-terminal domain YPD4_RS21110 PF11254 Protein of unknown function (DUF3053) YPD4_RS21115 PF05746 DALR anticodon binding domain YPD4_RS21115 PF02092 Glycyl-tRNA synthetase beta subunit YPD4_RS21120 PF02091 Glycyl-tRNA synthetase alpha subunit YPD4_RS21135 PF00691 OmpA family YPD4_RS21135 PF13488 Glycine zipper YPD4_RS21145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPD4_RS21145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPD4_RS21150 PF00128 Alpha amylase, catalytic domain YPD4_RS21160 PF00155 Aminotransferase class I and II YPD4_RS21165 PF02080 TrkA-C domain YPD4_RS21165 PF06826 Predicted Permease Membrane Region YPD4_RS21170 PF00011 Hsp20/alpha crystallin family YPD4_RS21175 PF00011 Hsp20/alpha crystallin family YPD4_RS21180 PF07119 Protein of unknown function (DUF1375) YPD4_RS21185 PF12566 Protein of unknown function (DUF3748) YPD4_RS21185 PF07676 WD40-like Beta Propeller Repeat YPD4_RS21190 PF12566 Protein of unknown function (DUF3748) YPD4_RS21190 PF07676 WD40-like Beta Propeller Repeat YPD4_RS21195 PF13291 ACT domain YPD4_RS21195 PF00291 Pyridoxal-phosphate dependent enzyme YPD4_RS21200 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPD4_RS21210 PF13276 HTH-like domain YPD4_RS21210 PF00665 Integrase core domain YPD4_RS21210 PF13333 Integrase core domain YPD4_RS21220 PF18053 DNA gyrase B subunit insert domain YPD4_RS21220 PF00204 DNA gyrase B YPD4_RS21220 PF00986 DNA gyrase B subunit, carboxyl terminus YPD4_RS21220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPD4_RS21220 PF01751 Toprim domain YPD4_RS21225 PF02463 RecF/RecN/SMC N terminal domain YPD4_RS21235 PF02767 DNA polymerase III beta subunit, central domain YPD4_RS21235 PF00712 DNA polymerase III beta subunit, N-terminal domain YPD4_RS21235 PF02768 DNA polymerase III beta subunit, C-terminal domain YPD4_RS21245 PF00468 Ribosomal protein L34 YPD4_RS21250 PF00825 Ribonuclease P YPD4_RS21255 PF02096 60Kd inner membrane protein YPD4_RS21255 PF14849 YidC periplasmic domain YPD4_RS21260 PF10396 GTP-binding protein TrmE N-terminus YPD4_RS21260 PF12631 MnmE helical domain YPD4_RS21260 PF01926 50S ribosome-binding GTPase YPD4_RS21265 PF07055 Enoyl reductase FAD binding domain YPD4_RS21265 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPD4_RS21265 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPD4_RS21280 PF00860 Permease family YPD4_RS21285 PF13419 Haloacid dehalogenase-like hydrolase YPD4_RS21290 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS21295 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS21300 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPD4_RS21310 PF01895 PhoU domain YPD4_RS21315 PF00005 ABC transporter YPD4_RS21320 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS21325 PF00528 Binding-protein-dependent transport system inner membrane component YPD4_RS21330 PF12849 PBP superfamily domain YPD4_RS21335 PF01380 SIS domain YPD4_RS21340 PF12804 MobA-like NTP transferase domain YPD4_RS21340 PF00132 Bacterial transferase hexapeptide (six repeats) YPD4_RS21345 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPD4_RS21345 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPD4_RS21350 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPD4_RS21350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_RS21355 PF00231 ATP synthase YPD4_RS21360 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPD4_RS21360 PF00306 ATP synthase alpha/beta chain, C terminal domain YPD4_RS21360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPD4_RS21365 PF00213 ATP synthase delta (OSCP) subunit YPD4_RS21370 PF00430 ATP synthase B/B' CF(0) YPD4_RS21375 PF00137 ATP synthase subunit C YPD4_RS21380 PF00119 ATP synthase A chain YPD4_RS21385 PF03899 ATP synthase I chain YPD4_RS21390 PF02527 rRNA small subunit methyltransferase G YPD4_RS21395 PF13932 GidA associated domain YPD4_RS21395 PF01134 Glucose inhibited division protein A YPD4_RS21425 PF03590 Aspartate-ammonia ligase YPD4_RS21435 PF05762 VWA domain containing CoxE-like protein YPD4_RS21720 PF17191 RecG wedge domain YPD4_RS21720 PF00271 Helicase conserved C-terminal domain YPD4_RS21720 PF00270 DEAD/DEAH box helicase YPD4_RS21835 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPD4_RS21860 PF05762 VWA domain containing CoxE-like protein YPD4_RS22000 PF02954 Bacterial regulatory protein, Fis family YPD4_RS22000 PF00072 Response regulator receiver domain YPD4_RS22000 PF00158 Sigma-54 interaction domain YPD4_RS22070 PF01695 IstB-like ATP binding protein YPD4_RS22115 PF00270 DEAD/DEAH box helicase YPD4_RS22115 PF17191 RecG wedge domain YPD4_RS22115 PF00271 Helicase conserved C-terminal domain YPD4_RS22340 PF00365 Phosphofructokinase