locus_tag old_locus_tag gene Name start end strand product note type ID NCBI YPD4_RS00005 YPD4_0001 YPD4_RS00005 270 710 - FMN-binding protein MioC An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00005 YPD4_RS00010 YPD4_0002 YPD4_RS00010 803 1264 - transcriptional regulator transcriptional repressor of asnA which codes for aspartate-ammonia ligase gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00010 YPD4_RS00015 YPD4_0003 YPD4_RS00015 1434 2426 + aspartate--ammonia ligase catalyzes the formation of asparagine from aspartate and ammonia gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00015 YPD4_RS00020 YPD4_0004 YPD4_RS00020 2525 3991 - protein ViaA contains a von Willibrand factor type A domain%3B stimulates the ATPase activity of RavA gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00020 YPD4_RS00025 YPD4_0005 YPD4_RS00025 3995 5548 - ATPase RavA interacts with LdcI%2C lysine decarboxylase%3B may be active in late log/ early stationary phase gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00025 YPD4_RS00030 YPD4_0006 trkD trkD 5822 7690 + low affinity potassium transport system protein kup Responsible for the low-affinity transport of potassium into the cell%3B involved in potassium ion uptake under hyper-osmotic stress at a low pH gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00030 YPD4_RS00035 YPD4_0007 YPD4_RS00035 7895 8314 + D-ribose pyranase cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose%3B RbsD is required for efficient ribose utilization in E. coli%3B rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00035 YPD4_RS00040 YPD4_0008 YPD4_RS00040 8365 9291 + ribokinase catalyzes the formation of D-ribose 5-phosphate from ribose gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00040 YPD4_RS00045 YPD4_RS00045 YPD4_RS00045 9344 9514 + transcriptional regulator gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00045 YPD4_RS00050 YPD4_0009 YPD4_RS00050 9511 10935 - MFS transporter gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00050 YPD4_RS00055 YPD4_0010 YPD4_RS00055 11015 11704 - GntR family transcriptional regulator gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00055 YPD4_RS00065 YPD4_r1 YPD4_RS00065 12261 13809 + 16S ribosomal RNA rRNA gene11 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00065 YPD4_RS00070 YPD4_t1 YPD4_RS00070 13943 14018 + tRNA-Glu tRNA gene12 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00070 YPD4_RS00075 YPD4_r2 YPD4_RS00075 14262 17195 + 23S ribosomal RNA rRNA gene13 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00075 YPD4_RS00080 YPD4_RS00080 YPD4_RS00080 17287 17402 + 5S ribosomal RNA rRNA gene14 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00080 YPD4_RS00085 YPD4_0011 YPD4_RS00085 17905 19113 + transposase gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00085 YPD4_RS00090 YPD4_0012 YPD4_RS00090 19171 19701 - molybdopterin-guanine dinucleotide biosynthesis protein B in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00090 YPD4_RS00095 YPD4_0013 mobA mobA 19701 20288 - molybdenum cofactor guanylyltransferase in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00095 YPD4_RS00100 YPD4_RS00100 YPD4_RS00100 20442 20711 + hypothetical protein gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00100 YPD4_RS00105 YPD4_0014 YPD4_RS00105 20791 21777 + serine/threonine protein kinase catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro%3B specific substrate in vivo has not been identified yet%3B plays a role in long-term cell survival and expression of surface appendages gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00105 YPD4_RS00110 YPD4_RS00110 YPD4_RS00110 21805 22427 + protein disulfide isomerase gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00110 YPD4_RS00115 YPD4_0016 YPD4_RS00115 22919 25717 + DNA polymerase I has 3'-5' exonuclease%2C 5'-3' exonuclease and 5'-3'polymerase activities%2C primarily functions to fill gaps during DNA replication and repair gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00115 YPD4_RS00120 YPD4_RS00120 YPD4_RS00120 25969 26136 + transposase gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00120 YPD4_RS00125 YPD4_0017 YPD4_RS00125 26126 26584 + transposase gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00125 YPD4_RS00130 YPD4_0018 YPD4_RS00130 26836 27486 - GTP-binding protein gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00130 YPD4_RS00135 YPD4_0019 YPD4_RS00135 28231 28797 + der GTPase-activating protein YihI gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00135 YPD4_RS00140 YPD4_0020 YPD4_RS00140 28980 30353 + coproporphyrinogen III oxidase catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00140 YPD4_RS00145 YPD4_0021 glnG glnG 30407 31819 - nitrogen regulation protein NR(I) response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes%3B interacts with sigma-54 gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00145 YPD4_RS00150 YPD4_0022 glnL glnL 31827 32876 - PAS domain-containing two-component system sensor histidine kinase sensory histidine kinase in two-component regulatory system with GlnG%3B acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00150 YPD4_RS00155 YPD4_0023 glnA glnA 33129 34538 - glutamine synthetase forms a homododecamer%3B forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate%3B also functions in the assimilation of ammonia%3B highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues%3B addition of adenylyl groups results in inactivation of the enzyme gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00155 YPD4_RS00160 YPD4_RS00160 YPD4_RS00160 34724 34855 - membrane protein gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00160 YPD4_RS00165 YPD4_0024 YPD4_RS00165 35100 36923 + GTP-binding protein gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00165 YPD4_RS00170 YPD4_0025 YPD4_RS00170 37245 37835 + phosphatase gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00170 YPD4_RS00175 YPD4_0026 YPD4_RS00175 37932 38816 + membrane protein gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00175 YPD4_RS00180 YPD4_0027 YPD4_RS00180 38823 39260 + D-aminoacyl-tRNA deacylase hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr)%3B possible defense mechanism against a harmful effect of D-tyrosine gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00180 YPD4_RS00185 YPD4_0028 YPD4_RS00185 39334 40113 - transposase gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00185 YPD4_RS00190 YPD4_0029 YPD4_RS00190 40113 41135 - transposase gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00190 YPD4_RS00195 YPD4_0030 YPD4_RS00195 41405 42328 + hypothetical protein gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00195 YPD4_RS00200 YPD4_0031 YPD4_RS00200 42463 44172 - hypothetical protein gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00200 YPD4_RS00205 YPD4_RS00205 YPD4_RS00205 44320 45706 - xanthine permease XanP high-affinity transporter for xanthine gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00205 YPD4_RS00210 YPD4_0034 YPD4_RS00210 45944 47158 + sodium/glutamate symport carrier protein GltS is involved with the sodium-dependent uptake of glutamate gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00210 YPD4_RS00215 YPD4_0035 YPD4_RS00215 47524 49605 - ATP-dependent DNA helicase RecG catalyzes branch migration in Holliday junction intermediates gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00215 YPD4_RS00220 YPD4_0036 YPD4_RS00220 49606 50265 - tRNA methyltransferase specifically modifies tRNA at position G18 gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00220 YPD4_RS00225 YPD4_0037 YPD4_RS00225 50304 52412 - bifunctional (p)ppGpp synthetase II/ guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00225 YPD4_RS00230 YPD4_RS00230 rpoZ rpoZ 52432 52707 - DNA-directed RNA polymerase subunit omega Promotes RNA polymerase assembly%3B latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00230 YPD4_RS00235 YPD4_0038 YPD4_RS00235 52762 53385 - guanylate kinase gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00235 YPD4_RS00240 YPD4_0039 ligB ligB 53786 55489 + DNA ligase B this ligase is similar to LigA but it lacks the C-terminal BRCT domain%3B catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+ gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00240 YPD4_RS00245 YPD4_0040 YPD4_RS00245 55502 56125 - membrane protein gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00245 YPD4_RS00250 YPD4_0041 YPD4_RS00250 56528 57391 - hypothetical protein gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00250 YPD4_RS00255 YPD4_0042 rph rph 57518 58234 + ribonuclease PH RNase PH%3B tRNA nucleotidyltransferase%3B forms hexamers in Bacillus subtilis%3B phosphoroltic 3'-5' exoribonuclease%3B involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00255 YPD4_RS00260 YPD4_0043 pyrE pyrE 58401 59048 + orotate phosphoribosyltransferase involved in fifth step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00260 YPD4_RS00265 YPD4_0044 slmA slmA 59183 59779 - nucleoid occlusion factor SlmA FtsZ binding protein%3B synthetically lethal with a defect in the Min system%3B this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00265 YPD4_RS00270 YPD4_0045 YPD4_RS00270 59901 60359 - deoxyuridine 5'-triphosphate nucleotidohydrolase catalyzes the formation of dUMP from dUTP gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00270 YPD4_RS00275 YPD4_0046 YPD4_RS00275 60337 61554 - phosphopantothenoylcysteine decarboxylase catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine%2C which is then decarboxylated to form 4'-phosphopantotheine gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00275 YPD4_RS00280 YPD4_0047 YPD4_RS00280 61748 62416 + DNA repair protein RadC gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00280 YPD4_RS00285 YPD4_RS00285 rpmB rpmB 62679 62915 + 50S ribosomal protein L28 required for 70S ribosome assembly gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00285 YPD4_RS00290 YPD4_RS00290 rpmG rpmG 62927 63094 + 50S ribosomal protein L33 in Escherichia coli BM108%2C a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function%3B there are paralogous genes in several bacterial genomes%2C and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31%3B the proteins in this group lack the CXXC motif gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00290 YPD4_RS00295 YPD4_0048 YPD4_RS00295 63177 63986 + formamidopyrimidine-DNA glycosylase Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00295 YPD4_RS00300 YPD4_0049 YPD4_RS00300 63992 64471 - phosphopantetheine adenylyltransferase gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00300 YPD4_RS00305 YPD4_0050 YPD4_RS00305 64468 65250 - LPS biosynthesis protein gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00305 YPD4_RS00310 YPD4_0051 YPD4_RS00310 65251 66528 - 3-deoxy-D-manno-octulosonic acid transferase catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00310 YPD4_RS00315 YPD4_0052 YPD4_RS00315 66948 67913 - ADP-heptose--LPS heptosyl transferase gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00315 YPD4_RS00320 YPD4_0053 YPD4_RS00320 67913 68977 - ADP-heptose--LPS heptosyl transferase catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00320 YPD4_RS00325 YPD4_0054 rfaD rfaD 69008 69940 - ADP-L-glycero-D-manno-heptose-6-epimerase catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00325 YPD4_RS00330 YPD4_0055 YPD4_RS00330 70186 71397 + 2-amino-3-ketobutyrate CoA ligase catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00330 YPD4_RS00335 YPD4_0056 tdh tdh 71407 72432 + L-threonine 3-dehydrogenase converts threonine and NAD to 1%2C2-amino-3-oxobutanoate and NADH%3B functions in threonine catabolism gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00335 YPD4_RS00340 YPD4_RS00340 YPD4_RS00340 72570 73504 - sugar deacetylase gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00340 YPD4_RS00345 YPD4_0059 YPD4_RS00345 73528 74898 - peptidase M37 gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00345 YPD4_RS00350 YPD4_0060 YPD4_RS00350 74908 76455 - 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00350 YPD4_RS00355 YPD4_0061 YPD4_RS00355 76852 77286 + hypothetical protein gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00355 YPD4_RS00360 YPD4_RS00360 YPD4_RS00360 77405 77653 + glutaredoxin gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00360 YPD4_RS00365 YPD4_0062 YPD4_RS00365 77741 78217 + protein-export protein SecB molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm%3B in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00365 YPD4_RS00370 YPD4_0063 YPD4_RS00370 78217 79236 + glycerol-3-phosphate dehydrogenase [NAD(P)+] gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00370 YPD4_RS00375 YPD4_RS00375 YPD4_RS00375 79296 79436 + hypothetical protein gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00375 YPD4_RS00380 YPD4_0064 cysE cysE 79502 80323 + serine acetyltransferase catalyzes the O-acetylation of serine gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00380 YPD4_RS00385 YPD4_0065 YPD4_RS00385 80446 80934 - tRNA (cytidine(34)-2'-O)-methyltransferase member of the SPOUT superfamily of RNA methyltransferases gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00385 YPD4_RS00390 YPD4_0066 YPD4_RS00390 81123 82187 + O6-methylguanine-DNA methyltransferase regulates genes involved in the repair of alkylated DNA%3B repairs DNA containing 6-O-methylguanine gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00390 YPD4_RS00395 YPD4_0067 cpxA cpxA 82236 83612 - two-component system sensor histidine kinase part of two-component CpxA/CpxR system%3B senses envelope stress%3B upregulates a number of periplasmic folding and trafficking factors gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00395 YPD4_RS00400 YPD4_0068 YPD4_RS00400 83609 84307 - two-component system response regulator response regulator in two-component regulatory system with CpxA%3B part of the envelope stress response system gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00400 YPD4_RS00405 YPD4_0069 cpxP cpxP 84481 84969 + universal stress protein repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA%3B CpxP is degraded by DegP protease especially in the presence of misfolded substrates gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00405 YPD4_RS00410 YPD4_0070 YPD4_RS00410 85647 86606 + hypothetical protein gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00410 YPD4_RS00415 YPD4_0071 fieF fieF 87168 88070 + cation-efflux pump FieF member of cation diffusion facilitator family%3B CDF%3B membrane-bound%3B induced by both zinc and iron%2C but does not induce resistance to zinc%3B can transport zinc(II) in a proton-dependent manner%3B instead this protein induces iron resistance%3B forms dimers gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00415 YPD4_RS00420 YPD4_0072 YPD4_RS00420 88288 89271 + ATP-dependent 6-phosphofructokinase catalyzes the formation of D-fructose 1%2C6-bisphosphate from D-fructose 6-phosphate in glycolysis gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00420 YPD4_RS00425 YPD4_0073 YPD4_RS00425 89492 90481 + sulfate transporter subunit gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00425 YPD4_RS00430 YPD4_0074 YPD4_RS00430 90731 91390 - molybdenum ABC transporter substrate-binding protein gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00430 YPD4_RS00435 YPD4_0075 YPD4_RS00435 91625 93052 - membrane protein gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00435 YPD4_RS00440 YPD4_0076 YPD4_RS00440 93118 93831 - hypothetical protein gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00440 YPD4_RS00445 YPD4_0077 YPD4_RS00445 93828 94565 - GlcNAc-PI de-N-acetylase gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00445 YPD4_RS00450 YPD4_0078 YPD4_RS00450 94702 95937 + LysR family transcriptional regulator gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00450 YPD4_RS00455 YPD4_0079 YPD4_RS00455 96169 96936 - triosephosphate isomerase Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00455 YPD4_RS00460 YPD4_0080 YPD4_RS00460 97065 97700 - hypothetical protein gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00460 YPD4_RS00465 YPD4_0081 YPD4_RS00465 97848 98282 + membrane protein gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00465 YPD4_RS00470 YPD4_0082 YPD4_RS00470 98623 99369 - ferredoxin-NADP reductase gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00470 YPD4_RS00475 YPD4_0083 YPD4_RS00475 99524 100534 - fructose 1%2C6-bisphosphatase gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00475 YPD4_RS00480 YPD4_0084 glpK glpK 100771 102294 - glycerol kinase Converts glycerol and ADP to glycerol-3-phosphate and ADP gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00480 YPD4_RS00485 YPD4_0085 YPD4_RS00485 102471 103319 - glycerol uptake facilitator protein involved in the transport of glycerol into the cell gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00485 YPD4_RS00490 YPD4_RS00490 YPD4_RS00490 103329 103568 - hypothetical protein gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00490 YPD4_RS00495 YPD4_RS00495 YPD4_RS00495 103947 104186 + cell division protein ZapB interacts with FisZ and is necessary for Z-ring formation gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00495 YPD4_RS00500 YPD4_0086 YPD4_RS00500 104394 104852 - transposase gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00500 YPD4_RS00505 YPD4_0087 YPD4_RS00505 105237 107351 - ABC transporter permease gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00505 YPD4_RS00510 YPD4_0088 YPD4_RS00510 107344 108636 - colicin V secretion protein CvaA gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00510 YPD4_RS00515 YPD4_RS00515 YPD4_RS00515 108849 109088 + hypothetical protein gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00515 YPD4_RS00520 YPD4_RS00520 YPD4_RS00520 109263 109412 + membrane protein gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00520 YPD4_RS00525 YPD4_0089 YPD4_RS00525 109718 110302 + hypothetical protein gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00525 YPD4_RS00530 YPD4_0090 YPD4_RS00530 110419 110904 - regulator of ribonuclease activity A regulator of RNase E%3B increases half-life and abundance of RNAs%3B interacts with RNase E possibly inhibiting catalytic activity gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00530 YPD4_RS00535 YPD4_0091 YPD4_RS00535 111046 111963 - 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase catalyzes the formation of dimethylmenaquinone from 1%2C4-dihydroxy-2-naphthoate and octaprenyl diphosphate gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00535 YPD4_RS00540 YPD4_0092 hslU hslU 112199 113530 - ATP-dependent protease ATPase subunit HslU heat shock protein involved in degradation of misfolded proteins gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00540 YPD4_RS00545 YPD4_0093 YPD4_RS00545 113601 114125 - ATP-dependent protease subunit HslV heat shock protein involved in degradation of misfolded proteins gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00545 YPD4_RS00550 YPD4_0094 YPD4_RS00550 114225 115070 - cell division protein FtsN gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00550 YPD4_RS00555 YPD4_0095 YPD4_RS00555 115136 116164 - transcriptional regulator gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00555 YPD4_RS00560 YPD4_RS00560 YPD4_RS00560 116287 116430 - primosome assembly protein PriA gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00560 YPD4_RS00565 YPD4_0096 YPD4_RS00565 116517 118715 - primosome assembly protein PriA binding of PriA to forked DNA starts the assembly of the primosome%2C also possesses 3'-5' helicase activity gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00565 YPD4_RS00570 YPD4_RS00570 rpmE rpmE 118958 119173 + 50S ribosomal protein L31 RpmE%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00570 YPD4_RS00575 YPD4_0097 YPD4_RS00575 119716 120171 - hypothetical protein gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00575 YPD4_RS00580 YPD4_RS00580 YPD4_RS00580 120222 120383 + hypothetical protein gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00580 YPD4_RS00585 YPD4_0098 YPD4_RS00585 120520 120837 - met repressor when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00585 YPD4_RS00590 YPD4_0099 YPD4_RS00590 121215 122374 + cystathionine gamma-synthase catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00590 YPD4_RS00595 YPD4_0100 metL metL 122377 124812 + bifunctional aspartate kinase II/homoserine dehydrogenase II multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00595 YPD4_RS00600 YPD4_0101 metF metF 125045 125938 + 5%2C10-methylenetetrahydrofolate reductase MTHFR%3B catalyzes NADH-linked reduction of 5%2C10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00600 YPD4_RS00605 YPD4_0102 YPD4_RS00605 126100 126885 - integrase gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00605 YPD4_RS00610 YPD4_RS00610 YPD4_RS00610 126939 127106 - transposase gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00610 YPD4_RS00615 YPD4_0104 YPD4_RS00615 127646 128404 - transcriptional regulator represses the glpD%2C glpFK%2C glpTQ%2C and glpACB operons involved in glycerol-3-phosphate metabolism gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00615 YPD4_RS00620 YPD4_0105 YPD4_RS00620 128439 129275 - rhomboid protease GlpG protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00620 YPD4_RS00625 YPD4_RS00625 glpE glpE 129293 129622 - thiosulfate sulfurtransferase GlpE belongs to rhodanese family%3B thiosulfate thiotransferase%3B in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency%3B contains an active site cysteine gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00625 YPD4_RS00630 YPD4_0107 YPD4_RS00630 129997 132708 - transcriptional regulator Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00630 YPD4_RS00635 YPD4_0108 YPD4_RS00635 133026 133376 + glycogen/starch/alpha-glucan phosphorylase gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00635 YPD4_RS00640 YPD4_0109 YPD4_RS00640 133406 135430 + maltodextrin phosphorylase gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00640 YPD4_RS00645 YPD4_0110 malQ malQ 135443 137539 + 4-alpha-glucanotransferase amylomaltase%3B acts to release glucose from maltodextrins gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00645 YPD4_RS00650 YPD4_0111 YPD4_RS00650 137868 138443 - fe/S biogenesis protein nfuA cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00650 YPD4_RS00655 YPD4_0112 YPD4_RS00655 138503 139204 - competence protein ComF gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00655 YPD4_RS00660 YPD4_0113 YPD4_RS00660 139291 140067 + pimeloyl-[acyl-carrier protein] methyl ester esterase Shows carboxylesterase activity with a preference for short chain fatty acid esters%3B involved in pimeloyl-CoA synthesis gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00660 YPD4_RS00665 YPD4_RS00665 YPD4_RS00665 140237 140506 + hypothetical protein gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00665 YPD4_RS00670 YPD4_RS00670 YPD4_RS00670 140644 140901 - ferrous iron transporter C regulatory protein that controls transcription of feoABC genes gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00670 YPD4_RS00675 YPD4_0114 feoB feoB 140937 143252 - iron transporter cytoplasmic membrane ferrous uptake system permease%3B mutations disrupt the ability of Escherichia coli to take up ferrous iron%3B GTP-binding protein which requires GTP for efficient iron(II) uptake gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00675 YPD4_RS00680 YPD4_RS00680 YPD4_RS00680 143344 143571 - iron transporter gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00680 YPD4_RS00685 YPD4_RS00685 YPD4_RS00685 143566 143712 + hypothetical protein gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00685 YPD4_RS00690 YPD4_0115 YPD4_RS00690 144095 146470 - transcription accessory protein gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00690 YPD4_RS00695 YPD4_0116 YPD4_RS00695 147004 147519 + transcription elongation factor GreB gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00695 YPD4_RS00700 YPD4_0117 ompR ompR 147655 148374 + two-component system response regulator part of two-component system EnvZ/OmpR%3B regulates transcription of outer membrane porin genes ompC/F%3B under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR%3B the result is increased expression of ompC and repression of ompF%3B also functions in regulation of other genes%3B forms dimers upon phosphorylation gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00700 YPD4_RS00705 YPD4_0118 envZ envZ 148371 149723 + two-component system sensor histidine kinase membrane-localized osmosensor%3B histidine kinase%3B in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00705 YPD4_RS00710 YPD4_0119 YPD4_RS00710 149858 151477 - phosphoenolpyruvate carboxykinase [ATP] PEP carboxykinase%3B PEP carboxylase%3B PEPCK%3B catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00710 YPD4_RS00715 YPD4_0120 hslO hslO 151674 152555 - molecular chaperone Hsp33 becomes active under oxidative stress%3B four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive%3B oxidative stress results in oxidized cysteines%2C release of zinc%2C and binding of Hsp33 to aggregation-prone proteins%3B forms dimers and higher order oligomers gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00715 YPD4_RS00720 YPD4_0121 YPD4_RS00720 152718 153125 - heat-shock protein Hsp15 gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00720 YPD4_RS00725 YPD4_0122 YPD4_RS00725 153154 153834 - nucleotidase gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00725 YPD4_RS00730 YPD4_0123 YPD4_RS00730 153978 156125 - intracellular growth attenuator protein IgaA gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00730 YPD4_RS00735 YPD4_RS00735 YPD4_RS00735 156405 156599 + hypothetical protein gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00735 YPD4_RS00740 YPD4_0124 nudE nudE 156712 157257 + ADP-ribose diphosphatase ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00740 YPD4_RS00745 YPD4_0125 mrcA mrcA 157393 159948 - penicillin-binding protein 1A bifunctional murein transglycosylase/murein transpeptidase%3B penicillin-binding protein 1A%3B involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation%3B penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00745 YPD4_RS00750 YPD4_0126 YPD4_RS00750 160068 160964 + pilus assembly protein HofM gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00750 YPD4_RS00755 YPD4_0127 YPD4_RS00755 160964 161569 + pilus assembly protein PilN gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00755 YPD4_RS00760 YPD4_0128 YPD4_RS00760 161562 162143 + membrane protein gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00760 YPD4_RS00765 YPD4_RS00765 YPD4_RS00765 162178 162537 + membrane protein gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00765 YPD4_RS00770 YPD4_0129 YPD4_RS00770 162540 162929 - hypothetical protein gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00770 YPD4_RS00775 YPD4_RS00775 hofQ hofQ 162964 164088 + porin outer membrane porin probably involved in uptake of extracellular double-stranded DNA%3B similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00775 YPD4_RS00780 YPD4_0132 aroK aroK 164437 164958 + shikimate kinase type I enzyme similar to type II but differentially regulated%3B major shikimate kinase in fully repressed cells%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00780 YPD4_RS00785 YPD4_0133 aroB aroB 165015 166103 + 3-dehydroquinate synthase catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate%3B functions in aromatic amino acid biosynthesis gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00785 YPD4_RS00790 YPD4_0134 YPD4_RS00790 166357 167346 + hypothetical protein gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00790 YPD4_RS00795 YPD4_0135 YPD4_RS00795 167430 168245 + DNA adenine methylase gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00795 YPD4_RS00800 YPD4_0136 YPD4_RS00800 168548 169225 + ribulose-phosphate 3-epimerase gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00800 YPD4_RS00805 YPD4_0137 YPD4_RS00805 169218 169916 + phosphoglycolate phosphatase catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00805 YPD4_RS00810 YPD4_0138 YPD4_RS00810 169918 170958 + tryptophanyl-tRNA synthetase gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00810 YPD4_RS00815 YPD4_0139 cysG cysG 171113 172525 - siroheme synthase 2 multifunction enzyme consisting of uroporphyrin-III C-methyltransferase%2C precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase%3B catalyzes the methylation of uroporphyrinogen III to form precorrin-2%2C then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00815 YPD4_RS00820 YPD4_0140 YPD4_RS00820 172613 173419 - nitrite transporter NirC member of the FNT family of formate and nitrite transporters gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00820 YPD4_RS00825 YPD4_0141 nirD nirD 173622 173948 - nitrite reductase small subunit involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+%3B bounds to NirB%2C the cytoplasmic subunit%2C whose expression is induced at high nitrate concentrations gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00825 YPD4_RS00830 YPD4_0142 YPD4_RS00830 173945 176491 - nitrite reductase subunit NirD gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00830 YPD4_RS00835 YPD4_0143 YPD4_RS00835 176813 178111 + cytosine deaminase Catalyzes the deamination of cytosine to uracil and ammonia gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00835 YPD4_RS00840 YPD4_0144 YPD4_RS00840 178196 179380 - protein TsgA gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00840 YPD4_RS00845 YPD4_0145 YPD4_RS00845 179866 181926 + TonB-dependent receptor gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00845 YPD4_RS00850 YPD4_0146 YPD4_RS00850 182027 183013 - LacI family transcriptional regulator gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00850 YPD4_RS00855 YPD4_0147 YPD4_RS00855 183262 184575 - glycosyl hydrolase catalyzes the fromation of N-acetyl-D-glucosamine and N-acetyl-D-glucosamine-6-phosphate from diacetylchitobiose-6-phosphate gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00855 YPD4_RS00860 YPD4_0148 YPD4_RS00860 185091 185660 + peptidyl-prolyl cis-trans isomerase gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00860 YPD4_RS00865 YPD4_0149 YPD4_RS00865 185986 187527 + hypothetical protein gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00865 YPD4_RS00870 YPD4_0150 YPD4_RS00870 187770 188345 + anthranilate synthase subunit II TrpG%3B with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine%3B TrpG provides the glutamine amidotransferase activity gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00870 YPD4_RS00875 YPD4_0151 argD argD 188478 189695 + acetylornithine aminotransferase DapATase%3B bifunctional enzyme that functions in arginine and lysine biosynthetic pathways%3B catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2%2C6-diaminoheptanedioate gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00875 YPD4_RS00880 YPD4_0152 YPD4_RS00880 189921 192041 - membrane protein gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00880 YPD4_RS00885 YPD4_0153 YPD4_RS00885 192127 192759 - transcriptional regulator cAMP receptor protein%3B complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00885 YPD4_RS00890 YPD4_0154 YPD4_RS00890 193095 193502 + hypothetical protein gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00890 YPD4_RS00895 YPD4_0155 YPD4_RS00895 193574 194005 + membrane protein gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00895 YPD4_RS00900 YPD4_0156 YPD4_RS00900 194183 195052 - phosphoribulokinase gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00900 YPD4_RS00905 YPD4_RS00905 YPD4_RS00905 195201 195437 - hypothetical protein gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00905 YPD4_RS00910 YPD4_0157 YPD4_RS00910 195434 196414 - hydrolase gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00910 YPD4_RS00915 YPD4_0158 YPD4_RS00915 196516 197118 + alcohol dehydrogenase gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00915 YPD4_RS00920 YPD4_0159 tauA tauA 197321 198382 + taurine ABC transporter substrate-binding protein with TauB and TauC is responsible for taurine uptake. gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00920 YPD4_RS00925 YPD4_0160 tauB tauB 198391 199158 + taurine import ATP-binding protein TauB Part of the ABC transporter complex tauABC involved in taurine import gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00925 YPD4_RS00930 YPD4_0161 YPD4_RS00930 199155 200009 + taurine ABC transporter permease gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00930 YPD4_RS00935 YPD4_0162 tauD tauD 200006 200854 + taurine dioxygenase catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide%3B non-heme iron oxidase%3B allows the use of taurine as an alternative sulfur source%3B forms homodimers gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00935 YPD4_RS00940 YPD4_0163 YPD4_RS00940 200867 201847 - glycosyl transferase gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00940 YPD4_RS00945 YPD4_0164 YPD4_RS00945 201940 202929 - glycosyl transferase gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00945 YPD4_RS00950 YPD4_RS00950 YPD4_RS00950 203064 204982 - ABC transporter ATP-binding protein gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00950 YPD4_RS00955 YPD4_0167 YPD4_RS00955 205233 205781 + glutathione-regulated potassium-efflux system ancillary protein KefG required for KefB activity gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00955 YPD4_RS00960 YPD4_0168 YPD4_RS00960 205785 207593 + glutathione-regulated potassium-efflux system protein KefB involved in potassium efflux gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00960 YPD4_RS00965 YPD4_RS00965 YPD4_RS00965 207609 207830 + hypothetical protein gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00965 YPD4_RS00970 YPD4_0169 YPD4_RS00970 207925 208512 + FKBP-type peptidyl-prolyl cis-trans isomerase rotamase gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00970 YPD4_RS00975 YPD4_RS00975 YPD4_RS00975 208733 208951 - protein SlyX required for phi X174 lysis gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00975 YPD4_RS00980 YPD4_0170 YPD4_RS00980 209266 210066 + peptidyl-prolyl cis-trans isomerase rotamase gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00980 YPD4_RS00985 YPD4_0171 YPD4_RS00985 210320 211042 + hypothetical protein gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00985 YPD4_RS00990 YPD4_0172 YPD4_RS00990 211042 211437 + sulfurtransferase TusD in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00990 YPD4_RS00995 YPD4_0173 YPD4_RS00995 211437 211802 + protein TusC gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS00995 YPD4_RS01000 YPD4_RS01000 YPD4_RS01000 211822 212109 + protein TusB gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01000 YPD4_RS01005 YPD4_0174 YPD4_RS01005 212247 212621 + 30S ribosomal protein S12 gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01005 YPD4_RS01010 YPD4_0175 YPD4_RS01010 212718 213188 + 30S ribosomal protein S7 gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01010 YPD4_RS01015 YPD4_0176 fusA fusA 213282 215390 + elongation factor G EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01015 YPD4_RS01020 YPD4_0177 tuf tuf 215463 216647 + elongation factor Tu EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01020 YPD4_RS01025 YPD4_0178 YPD4_RS01025 216850 217308 + transposase gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01025 YPD4_RS01030 YPD4_RS01030 YPD4_RS01030 217496 217690 + bacterioferritin-associated ferredoxin gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01030 YPD4_RS01035 YPD4_0179 YPD4_RS01035 217769 218242 + bacterioferritin iron storage protein gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01035 YPD4_RS01040 YPD4_0180 rpsJ rpsJ 218657 218968 + 30S ribosomal protein S10 NusE%3B involved in assembly of the 30S subunit%3B in the ribosome%2C this protein is involved in the binding of tRNA%3B in Escherichia coli this protein was also found to be involved in transcription antitermination%3B NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination%3B binding of NusB/S10 to boxA nucleates assembly of the antitermination complex gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01040 YPD4_RS01045 YPD4_0181 YPD4_RS01045 219001 219630 + 50S ribosomal protein L3 gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01045 YPD4_RS01050 YPD4_0182 rplD rplD 219647 220252 + 50S ribosomal protein L4 L4 is important during the early stages of 50S assembly%3B it initially binds near the 5' end of the 23S rRNA gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01050 YPD4_RS01055 YPD4_0183 rplW rplW 220249 220551 + 50S ribosomal protein L23 binds third domain of 23S rRNA and protein L29%3B part of exit tunnel gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01055 YPD4_RS01060 YPD4_0184 YPD4_RS01060 220568 221392 + 50S ribosomal protein L2 gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01060 YPD4_RS01065 YPD4_RS01065 YPD4_RS01065 221407 221685 + 30S ribosomal protein S19 gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01065 YPD4_RS01070 YPD4_0185 YPD4_RS01070 221700 222032 + 50S ribosomal protein L22 gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01070 YPD4_RS01075 YPD4_0186 YPD4_RS01075 222050 222748 + 30S ribosomal protein S3 gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01075 YPD4_RS01080 YPD4_0187 YPD4_RS01080 222761 223171 + 50S ribosomal protein L16 gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01080 YPD4_RS01085 YPD4_RS01085 YPD4_RS01085 223171 223362 + 50S ribosomal protein L29 one of the stabilizing components for the large ribosomal subunit gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01085 YPD4_RS01090 YPD4_RS01090 YPD4_RS01090 223362 223616 + 30S ribosomal protein S17 gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01090 YPD4_RS01095 YPD4_0188 YPD4_RS01095 223797 224168 + 50S ribosomal protein L14 gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01095 YPD4_RS01100 YPD4_0189 rplX rplX 224179 224493 + 50S ribosomal protein L24 assembly initiator protein%3B binds to 5' end of 23S rRNA and nucleates assembly of the 50S%3B surrounds polypeptide exit tunnel gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01100 YPD4_RS01105 YPD4_0190 YPD4_RS01105 224508 225047 + 50S ribosomal protein L5 gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01105 YPD4_RS01110 YPD4_0191 rpsN rpsN 225061 225366 + 30S ribosomal protein S14 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit%3B similar to what is observed with proteins L31 and L33%2C some proteins in this family contain CXXC motifs that are involved in zinc binding%3B if two copies are present in a genome%2C then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc%3B the proteins in this group do not appear to have the zinc-binding motif gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01110 YPD4_RS01115 YPD4_0192 YPD4_RS01115 225400 225792 + 30S ribosomal protein S8 gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01115 YPD4_RS01120 YPD4_0193 YPD4_RS01120 225807 226340 + 50S ribosomal protein L6 gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01120 YPD4_RS01125 YPD4_0194 YPD4_RS01125 226350 226703 + 50S ribosomal protein L18 gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01125 YPD4_RS01130 YPD4_0195 YPD4_RS01130 226718 227221 + 30S ribosomal protein S5 gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01130 YPD4_RS01135 YPD4_RS01135 rpmD rpmD 227224 227403 + 50S ribosomal protein L30 L30 binds domain II of the 23S rRNA and the 5S rRNA%3B similar to eukaryotic protein L7 gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01135 YPD4_RS01140 YPD4_0196 YPD4_RS01140 227407 227841 + 50S ribosomal protein L15 gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01140 YPD4_RS01145 YPD4_0197 secY secY 227849 229181 + preprotein translocase subunit SecY forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01145 YPD4_RS01150 YPD4_RS01150 YPD4_RS01150 229215 229331 + 50S ribosomal protein L36 gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01150 YPD4_RS01155 YPD4_0198 YPD4_RS01155 229479 229835 + 30S ribosomal protein S13 gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01155 YPD4_RS01160 YPD4_0199 YPD4_RS01160 229852 230241 + 30S ribosomal protein S11 gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01160 YPD4_RS01165 YPD4_0200 YPD4_RS01165 230272 230892 + 30S ribosomal protein S4 gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01165 YPD4_RS01170 YPD4_0201 YPD4_RS01170 230918 231907 + DNA-directed RNA polymerase subunit alpha catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01170 YPD4_RS01175 YPD4_0202 rplQ rplQ 231948 232337 + 50S ribosomal protein L17 is a component of the macrolide binding site in the peptidyl transferase center gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01175 YPD4_RS01180 YPD4_0203 zntR zntR 232784 233209 + Zn(II)-responsive transcriptional regulator mediates expression of the zinc export protein ZntA in response to high levels of zinc%3B member of MerR family of transcriptional regulators gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01180 YPD4_RS01185 YPD4_RS01185 YPD4_RS01185 233297 233497 + hypothetical protein gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01185 YPD4_RS01190 YPD4_0204 mscL mscL 233607 234020 - large-conductance mechanosensitive channel forms homopentamer%3B channel that opens in response to pressure or hypoosmotic shock gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01190 YPD4_RS01195 YPD4_0205 trkA trkA 234159 235535 - potassium transporter peripheral membrane protein involved in potassium uptake%3B found to be peripherally associated with the inner membrane in Escherichia coli%3B contains an NAD-binding domain gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01195 YPD4_RS01200 YPD4_0206 YPD4_RS01200 235591 236880 - ribosomal RNA small subunit methyltransferase B catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA%3B SAM-dependent methyltransferase gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01200 YPD4_RS01205 YPD4_0207 fmt fmt 236974 237921 - methionyl-tRNA formyltransferase modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation%3B inactivation of this gene in Escherichia coli severely impairs growth gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01205 YPD4_RS01210 YPD4_0208 YPD4_RS01210 237946 238458 - peptide deformylase gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01210 YPD4_RS01215 YPD4_0209 YPD4_RS01215 238593 239714 + DNA processing protein DprA gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01215 YPD4_RS01220 YPD4_0210 YPD4_RS01220 239686 240159 + protein Smg gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01220 YPD4_RS01225 YPD4_0211 YPD4_RS01225 240200 240739 + DNA-binding protein gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01225 YPD4_RS01230 YPD4_0212 YPD4_RS01230 240741 241313 + threonylcarbamoyl-AMP synthase involved in the biosynthesis of the threonylcarbamoyladenosine (t6A) residue at position 37 of ANN-decoding tRNAs gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01230 YPD4_RS01235 YPD4_0213 YPD4_RS01235 241322 242143 + shikimate dehydrogenase (NADP+) gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01235 YPD4_RS01240 YPD4_0214 YPD4_RS01240 242198 242683 - carbonic anhydrase gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01240 YPD4_RS01245 YPD4_0215 YPD4_RS01245 242795 243574 - transposase gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01245 YPD4_RS01250 YPD4_0216 YPD4_RS01250 243574 244575 - transposase gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01250 YPD4_RS01255 YPD4_0217 YPD4_RS01255 244655 245641 + hydrolase gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01255 YPD4_RS01260 YPD4_0218 actP actP 245715 247370 - cation/acetate symporter ActP member of the sodium:solute symporter family%3B cotranscribed with the acs gene which encodes acetyl coenzyme A synthase%3B mutations affect acetate uptake gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01260 YPD4_RS01265 YPD4_0219 YPD4_RS01265 247367 247678 - membrane protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01265 YPD4_RS01270 YPD4_0220 YPD4_RS01270 247735 249693 - acetyl-CoA synthetase Acs%3B catalyzes the conversion of acetate and CoA to acetyl-CoA gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01270 YPD4_RS01275 YPD4_0221 YPD4_RS01275 250594 251910 + proton glutamate symport protein gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01275 YPD4_RS01280 YPD4_0222 YPD4_RS01280 252088 252720 - transcriptional regulator gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01280 YPD4_RS01285 YPD4_0223 YPD4_RS01285 252733 255552 - two-component system sensor histidine kinase/response regulator phosphorylates the response regulator SsrB%3B is involved in the expression of the virulence genes of Salmonella pathogenicity island-2 gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01285 YPD4_RS01290 YPD4_0224 YPD4_RS01290 255796 257295 + type II secretory pathway protein gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01290 YPD4_RS01295 YPD4_0225 YPD4_RS01295 257297 258511 + type III secretion protein SsaD gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01295 YPD4_RS01300 YPD4_RS01300 YPD4_RS01300 258530 258751 + type III secretion system protein%2C YseE family gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01300 YPD4_RS01305 YPD4_0226 YPD4_RS01305 258925 259545 + AraC family transcriptional regulator gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01305 YPD4_RS01310 YPD4_RS01310 YPD4_RS01310 259555 259770 + type III secretion protein gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01310 YPD4_RS01315 YPD4_RS01315 YPD4_RS01315 259767 260015 + type III secretion system protein%2C SsaH family gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01315 YPD4_RS01320 YPD4_RS01320 YPD4_RS01320 260113 260364 + type III secretion apparatus protein%2C YscI/HrpB gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01320 YPD4_RS01325 YPD4_0227 YPD4_RS01325 260361 261092 + type III secretion protein SsaJ gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01325 YPD4_RS01330 YPD4_0228 YPD4_RS01330 261267 261860 + hypothetical protein gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01330 YPD4_RS01335 YPD4_0229 YPD4_RS01335 261857 262504 + type III secretion protein HrpE gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01335 YPD4_RS01340 YPD4_0230 YPD4_RS01340 262491 264545 + secretion system apparatus protein SsaV with SsaC forms part of a protein export system across the inner and outer cell membranes%3B part of the Salmonella pathogenicity island 2%3B part of the type III secretion system gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01340 YPD4_RS01345 YPD4_0231 YPD4_RS01345 264532 265869 + type III secretion system ATPase gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01345 YPD4_RS01350 YPD4_0232 YPD4_RS01350 265866 266267 + type III secretion protein gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01350 YPD4_RS01355 YPD4_0233 YPD4_RS01355 266248 266646 + hypothetical protein gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01355 YPD4_RS01360 YPD4_0234 YPD4_RS01360 266624 267586 + type III secretion protein SsaQ gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01360 YPD4_RS01365 YPD4_0235 ssaR ssaR 267713 268363 + flagellar biosynthesis protein FliP part of a set of proteins involved in the infection of eukaryotic cells%3B in plant pathogens involved in the hypersensitivity response gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01365 YPD4_RS01370 YPD4_RS01370 YPD4_RS01370 268360 268653 + type III secretion system protein SsaS gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01370 YPD4_RS01375 YPD4_RS01375 YPD4_RS01375 268655 269449 + type III secretion protein gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01375 YPD4_RS01380 YPD4_RS01380 YPD4_RS01380 269439 270505 + secretion system apparatus protein SsaU gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01380 YPD4_RS01385 YPD4_0239 YPD4_RS01385 270888 272102 + membrane protein gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01385 YPD4_RS01390 YPD4_RS01390 YPD4_RS01390 272099 272368 + hypothetical protein gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01390 YPD4_RS01395 YPD4_0240 YPD4_RS01395 272446 273429 - LysR family transcriptional regulator gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01395 YPD4_RS01400 YPD4_0241 YPD4_RS01400 273599 274885 + transporter gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01400 YPD4_RS01405 YPD4_0242 YPD4_RS01405 274931 276112 + cystathionine beta-lyase catalyzes the formation of L-homocysteine from cystathionine gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01405 YPD4_RS01410 YPD4_0243 hmuV hmuV 276254 277054 - hemin import ATP-binding protein HmuV with HmuTU is involved in the transport of hemin gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01410 YPD4_RS01415 YPD4_0244 YPD4_RS01415 277047 278051 - hemin ABC transporter permease gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01415 YPD4_RS01420 YPD4_0245 YPD4_RS01420 278048 278887 - hemin-binding periplasmic protein HmuT gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01420 YPD4_RS01425 YPD4_0246 YPD4_RS01425 278884 279921 - hemin transporter HmuS gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01425 YPD4_RS01430 YPD4_RS01430 YPD4_RS01430 280040 282069 - ligand-gated channel protein gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01430 YPD4_RS01435 YPD4_0249 YPD4_RS01435 282484 283134 - NmrA family protein gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01435 YPD4_RS01440 YPD4_0250 YPD4_RS01440 283168 283677 - heme utilization carrier protein gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01440 YPD4_RS01445 YPD4_0251 YPD4_RS01445 283710 285023 - heme utilization radical SAM enzyme HutW catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01445 YPD4_RS01450 YPD4_0252 YPD4_RS01450 285364 286164 - methylenetetrahydrofolate reductase gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01450 YPD4_RS01455 YPD4_0253 YPD4_RS01455 286479 286967 - tellurium resistance protein TerW gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01455 YPD4_RS01460 YPD4_0254 YPD4_RS01460 287364 288323 - ATP-binding protein gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01460 YPD4_RS01465 YPD4_0255 YPD4_RS01465 288323 289402 - hypothetical protein gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01465 YPD4_RS01470 YPD4_0256 YPD4_RS01470 289395 290207 - hypothetical protein gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01470 YPD4_RS01475 YPD4_0257 YPD4_RS01475 290200 291336 - hypothetical protein gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01475 YPD4_RS01480 YPD4_0258 YPD4_RS01480 291348 292409 - hypothetical protein gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01480 YPD4_RS01485 YPD4_0259 YPD4_RS01485 292685 293278 + tellurium resistance protein TerZ gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01485 YPD4_RS01490 YPD4_RS01490 YPD4_RS01490 293278 294463 + tellurium resistance protein TerA gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01490 YPD4_RS01495 YPD4_0262 YPD4_RS01495 294496 294951 + tellurite resistance protein gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01495 YPD4_RS01500 YPD4_0263 YPD4_RS01500 294973 296010 + tellurium resistance protein TerC gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01500 YPD4_RS01505 YPD4_0264 YPD4_RS01505 296074 296652 + chemical-damaging agent resistance protein C gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01505 YPD4_RS01510 YPD4_0265 YPD4_RS01510 296836 297411 + tellurium resistance protein TerE gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01510 YPD4_RS01515 YPD4_0266 YPD4_RS01515 298124 298762 + hypothetical protein gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01515 YPD4_RS01520 YPD4_0267 YPD4_RS01520 299013 301391 + membrane protein gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01520 YPD4_RS01525 YPD4_0268 YPD4_RS01525 301463 302206 + fimbrial protein gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01525 YPD4_RS01530 YPD4_RS01530 YPD4_RS01530 302217 302471 + hypothetical protein gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01530 YPD4_RS01535 YPD4_0269 YPD4_RS01535 303664 304983 + hypothetical protein gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01535 YPD4_RS01540 YPD4_RS01540 YPD4_RS01540 305500 305703 + hypothetical protein gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01540 YPD4_RS01545 YPD4_0270 YPD4_RS01545 305992 308049 + oxidoreductase gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01545 YPD4_RS01550 YPD4_0271 YPD4_RS01550 308393 312202 - autotransporter gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01550 YPD4_RS01555 YPD4_0272 YPD4_RS01555 313034 313558 + Chorismate pyruvate-lyase gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01555 YPD4_RS01560 YPD4_0273 ubiA ubiA 313724 314590 + 4-hydroxybenzoate octaprenyltransferase catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate%2C as part of the ubiquinone biosynthesis pathway gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01560 YPD4_RS01565 YPD4_0274 YPD4_RS01565 314771 317248 - glycerol-3-phosphate acyltransferase PlsB%3B catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01565 YPD4_RS01570 YPD4_0275 YPD4_RS01570 317376 317747 + diacylglycerol kinase catalyzes the phosphorylation of diacylglycerol to form diacylglycerol phosphate gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01570 YPD4_RS01575 YPD4_0276 YPD4_RS01575 317872 318480 + LexA repressor Represses a number of genes involved in the response to DNA damage gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01575 YPD4_RS01580 YPD4_0277 YPD4_RS01580 318682 319191 - transcriptional regulator Acts as a negative controlling element%2C employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01580 YPD4_RS01585 YPD4_0278 YPD4_RS01585 319446 320483 + tRNA-dihydrouridine synthase A gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01585 YPD4_RS01590 YPD4_RS01590 YPD4_RS01590 321008 321226 + phage-shock protein gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01590 YPD4_RS01595 YPD4_0279 YPD4_RS01595 321571 322554 - quinone oxidoreductase gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01595 YPD4_RS01600 YPD4_0280 YPD4_RS01600 322886 324292 + replicative DNA helicase unwinds double stranded DNA gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01600 YPD4_RS01605 YPD4_0281 alr alr 324389 325468 + alanine racemase converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01605 YPD4_RS01610 YPD4_0282 YPD4_RS01610 325654 326847 + aromatic amino acid aminotransferase catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01610 YPD4_RS01615 YPD4_0283 YPD4_RS01615 327374 327733 + hypothetical protein gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01615 YPD4_RS01620 YPD4_0284 YPD4_RS01620 327826 330669 - UvrABC system protein A gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01620 YPD4_RS01625 YPD4_0285 YPD4_RS01625 331127 331675 + single-stranded DNA-binding protein binds to single stranded DNA and PriA helcase facilitate replication restart gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01625 YPD4_RS01630 YPD4_0286 YPD4_RS01630 331921 332235 - L-rhamnose mutarotase gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01630 YPD4_RS01635 YPD4_0287 YPD4_RS01635 332249 333397 - alcohol dehydrogenase gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01635 YPD4_RS01640 YPD4_0288 YPD4_RS01640 333464 334288 - rhamnulose-1-phosphate aldolase gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01640 YPD4_RS01645 YPD4_0289 YPD4_RS01645 334301 335558 - sugar isomerase catalyzes the formation of L-rhamnulose from L-rhamnose gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01645 YPD4_RS01650 YPD4_0290 YPD4_RS01650 335555 337012 - rhamnulokinase gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01650 YPD4_RS01655 YPD4_RS01655 YPD4_RS01655 337011 337217 + phosphoribosylaminoimidazole synthetase gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01655 YPD4_RS01660 YPD4_RS01660 YPD4_RS01660 337214 337357 + hypothetical protein gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01660 YPD4_RS01665 YPD4_0291 YPD4_RS01665 337439 338260 + transcriptional activator RhaS gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01665 YPD4_RS01670 YPD4_0292 YPD4_RS01670 338393 339265 + HTH-type transcriptional activator RhaR activates the expression of rhaRS in response to L-rhamnose gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01670 YPD4_RS01675 YPD4_0293 YPD4_RS01675 339414 340448 - l-rhamnose-proton symporter transports L-rhamnose and L-lyxose into the cell gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01675 YPD4_RS01680 YPD4_RS01680 YPD4_RS01680 340602 340868 + hypothetical protein gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01680 YPD4_RS01685 YPD4_0294 YPD4_RS01685 341304 341729 - subtilase gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01685 YPD4_RS01690 YPD4_RS01690 YPD4_RS01690 341959 342126 + hypothetical protein gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01690 YPD4_RS01695 YPD4_0295 YPD4_RS01695 342156 344711 + viral enhancin protein gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01695 YPD4_RS01700 YPD4_t2 YPD4_RS01700 345145 345220 - tRNA-Phe tRNA gene339 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01700 YPD4_RS01705 YPD4_0296 YPD4_RS01705 345365 345940 - transcriptional regulator gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01705 YPD4_RS01710 YPD4_0297 YPD4_RS01710 346360 348375 + oxidoreductase Fe-S-binding subunit unknown function%3B in E. coli the aegA gene is regulated by Fnr%2C NarXL%2C and NarQ (but not ArcA)%2C induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic) gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01710 YPD4_RS01715 YPD4_0298 YPD4_RS01715 348398 348955 + 4Fe-4S ferredoxin gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01715 YPD4_RS01720 YPD4_0299 YPD4_RS01720 348978 351125 + formate dehydrogenase selenocysteine-containing polypeptide%3B hydrogen linked formate dehydrogenase which catalyzes the oxidation of formate gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01720 YPD4_RS01725 YPD4_0300 dipZ dipZ 351187 352974 - thiol:disulfide interchange protein DsbD two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm%3B DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01725 YPD4_RS01730 YPD4_RS01730 YPD4_RS01730 352950 353272 - cation tolerance protein CutA copper binding protein required for copper tolerance%3B involved in resistance toward heavy metals gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01730 YPD4_RS01735 YPD4_0301 YPD4_RS01735 353493 354794 - C4-dicarboxylate ABC transporter functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate%3B similar to dcuB gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01735 YPD4_RS01740 YPD4_0302 aspA aspA 354914 356380 - aspartate ammonia-lyase catalyzes the formation of fumarate from aspartate gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01740 YPD4_RS01745 YPD4_0303 YPD4_RS01745 356797 357375 + exclusion suppressor FxsA gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01745 YPD4_RS01750 YPD4_RS01750 groES groES 357630 357923 + molecular chaperone GroES 10 kDa chaperonin%3B Cpn10%3B GroES%3B forms homoheptameric ring%3B binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it%3B folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES%3B release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01750 YPD4_RS01755 YPD4_0304 groEL groEL 357970 359616 + molecular chaperone GroEL 60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is essential for growth gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01755 YPD4_RS01760 YPD4_0305 YPD4_RS01760 360240 360638 + membrane protein gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01760 YPD4_RS01765 YPD4_0306 YPD4_RS01765 360923 361951 - EF-P beta-lysylation protein EpmB gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01765 YPD4_RS01770 YPD4_0307 YPD4_RS01770 361987 362553 + elongation factor P gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01770 YPD4_RS01775 YPD4_RS01775 YPD4_RS01775 362800 363114 + quaternary ammonium compound-resistance protein SugE member of the SMR family of proton-dependent drug efflux transporters%3B quaternary ammonium compound efflux pump%3B confers resistance to cetylpyridinium%2C cetyldimethylethyl ammonium and cetrimide cations gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01775 YPD4_RS01780 YPD4_0309 YPD4_RS01780 363279 363635 - fumarate reductase subunit D gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01780 YPD4_RS01785 YPD4_0310 YPD4_RS01785 363652 364044 - fumarate reductase subunit C part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01785 YPD4_RS01790 YPD4_0311 YPD4_RS01790 364061 364795 - fumarate reductase iron-sulfur subunit part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01790 YPD4_RS01795 YPD4_0312 YPD4_RS01795 364788 366611 - fumarate reductase flavoprotein subunit part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01795 YPD4_RS01800 YPD4_RS01800 YPD4_RS01800 366718 366909 + membrane protein gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01800 YPD4_RS01805 YPD4_0313 YPD4_RS01805 367069 368046 + elongation factor P--(R)-beta-lysine ligase poxA%3B regulates pyruvate oxidase poxB gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01805 YPD4_RS01810 YPD4_0314 YPD4_RS01810 368167 371508 - mechanosensitive channel protein gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01810 YPD4_RS01815 YPD4_0315 YPD4_RS01815 371550 372431 - phosphatidylserine decarboxylase proenzyme gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01815 YPD4_RS01820 YPD4_0316 YPD4_RS01820 372756 373808 - GTPase RsgA EngC%3B RsgA%3B CpgA%3B circularly permuted GTPase%3B ribosome small subunit-dependent GTPase A%3B has the pattern G4-G1-G3 as opposed to other GTPases%3B interacts strongly with 30S ribosome which stimulates GTPase activity gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01820 YPD4_RS01825 YPD4_RS01825 YPD4_RS01825 373815 374009 - hypothetical protein gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01825 YPD4_RS01830 YPD4_0317 YPD4_RS01830 374008 374553 + oligoribonuclease 3'-5' exoribonuclease specific for small oligoribonuclotides gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01830 YPD4_RS01840 YPD4_t3 YPD4_RS01840 375111 375186 + tRNA-Gly tRNA gene366 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01840 YPD4_RS01845 YPD4_t4 YPD4_RS01845 375278 375353 + tRNA-Gly tRNA gene367 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01845 YPD4_RS01850 YPD4_0318 YPD4_RS01850 375665 376900 - epoxyqueuosine reductase gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01850 YPD4_RS01855 YPD4_0319 YPD4_RS01855 376899 378413 + carbohydrate kinase gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01855 YPD4_RS01860 YPD4_0320 YPD4_RS01860 378424 378894 + tRNA threonylcarbamoyladenosine biosynthesis protein TsaE needed for nucleoid integrity%3B possibly involved in cell wall synthesis gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01860 YPD4_RS01865 YPD4_0321 YPD4_RS01865 378902 380815 + N-acetylmuramoyl-L-alanine amidase gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01865 YPD4_RS01870 YPD4_0322 YPD4_RS01870 380831 382738 + DNA mismatch repair protein MutL gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01870 YPD4_RS01875 YPD4_0323 miaA miaA 382731 383672 + tRNA dimethylallyltransferase IPP transferase%3B isopentenyltransferase%3B involved in tRNA modification%3B in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil%3B further tRNA modifications may occur%3B mutations in miaA result in defects in translation efficiency and fidelity gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01875 YPD4_RS01880 YPD4_0324 hfq hfq 383788 384093 + RNA chaperone Hfq HF-I%2C host factor for RNA phage Q beta replication gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01880 YPD4_RS01885 YPD4_0325 YPD4_RS01885 384192 385478 + GTPase HflX involved in modulation of proteins HflK and HflC%3B part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01885 YPD4_RS01890 YPD4_0326 YPD4_RS01890 385719 386978 + cell division protein FtsH with HflC inhibits proteolysis of lambda cII protein by FtsH gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01890 YPD4_RS01895 YPD4_0327 YPD4_RS01895 386982 387986 + cell division protein FtsH with HflK inhibits proteolysis of lambda cII protein by FtsH gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01895 YPD4_RS01900 YPD4_RS01900 YPD4_RS01900 388158 388358 + membrane protein gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01900 YPD4_RS01905 YPD4_0328 YPD4_RS01905 388458 389756 + adenylosuccinate synthetase catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01905 YPD4_RS01910 YPD4_0329 YPD4_RS01910 390125 390550 + transcriptional regulator negatively regulates the transcription of genes upregulated by nitrosative stress gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01910 YPD4_RS01915 YPD4_RS01915 YPD4_RS01915 390791 393324 + exoribonuclease R 3'-5'exoribonuclease that acts nonspecifically on poly(A)%2C poly(U) and ribosomal RNAs gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01915 YPD4_RS01920 YPD4_0332 YPD4_RS01920 393443 394183 + 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB Specifically methylates the ribose of guanosine 2251 in 23S rRNA gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01920 YPD4_RS01925 YPD4_0333 YPD4_RS01925 394413 396044 + isovaleryl CoA dehydrogenase catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01925 YPD4_RS01930 YPD4_0334 YPD4_RS01930 396116 396427 - transporter in Escherichia coli%2C mutation of this gene affects biofilm maturation%2C stress response%2C and motility gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01930 YPD4_RS01935 YPD4_RS01935 YPD4_RS01935 396618 396716 + phospholipase gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01935 YPD4_RS01940 YPD4_0335 YPD4_RS01940 396767 397546 - transposase gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01940 YPD4_RS01945 YPD4_0336 YPD4_RS01945 397596 398567 - transposase gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01945 YPD4_RS01950 YPD4_0337 YPD4_RS01950 398701 400764 + ATP-binding protein gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01950 YPD4_RS01955 YPD4_0338 YPD4_RS01955 400761 402077 + mcrBC 5-methylcytosine restriction system component family protein gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01955 YPD4_RS01960 YPD4_RS01960 YPD4_RS01960 402144 402374 + hypothetical protein gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01960 YPD4_RS01965 YPD4_RS01965 YPD4_RS01965 402699 402962 - transposase gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01965 YPD4_RS01970 YPD4_0339 YPD4_RS01970 403101 404426 + restriction endonuclease subunit M gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01970 YPD4_RS01975 YPD4_0340 YPD4_RS01975 404476 405198 + histidine kinase gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01975 YPD4_RS01980 YPD4_0341 YPD4_RS01980 405170 406543 + hypothetical protein gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01980 YPD4_RS01985 YPD4_RS01985 YPD4_RS01985 406887 407174 - hypothetical protein gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01985 YPD4_RS01990 YPD4_RS01990 YPD4_RS01990 407376 407573 - hypothetical protein gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01990 YPD4_RS01995 YPD4_RS01995 YPD4_RS01995 407614 407709 + transposase gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS01995 YPD4_RS02000 YPD4_0342 YPD4_RS02000 407815 409203 + ATPase involved in DNA repair gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02000 YPD4_RS02005 YPD4_0343 YPD4_RS02005 409200 410354 + hypothetical protein gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02005 YPD4_RS02010 YPD4_RS02010 YPD4_RS02010 410366 410491 - hypothetical protein gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02010 YPD4_RS02015 YPD4_0344 YPD4_RS02015 410500 411546 - peptidase M48 gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02015 YPD4_RS02020 YPD4_0345 YPD4_RS02020 411557 412753 - membrane protein gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02020 YPD4_RS02025 YPD4_0346 YPD4_RS02025 413459 413995 + hypothetical protein gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02025 YPD4_RS02030 YPD4_0347 YPD4_RS02030 413997 414872 + transcriptional regulator gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02030 YPD4_RS02035 YPD4_0348 YPD4_RS02035 414865 415209 - PTS fructose transporter subunit IIB FrwD with FrwB%2C FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell%3B phosphorylated by EIIA%3B FrwB homolog gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02035 YPD4_RS02040 YPD4_0349 YPD4_RS02040 415302 415622 - PTS fructose transporter subunit IIB FrwB with FrwC%2C FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell%3B cytoplasmic protein that interacts with complex EIIA%3B contains the second phosphorylation site of the PTS gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02040 YPD4_RS02045 YPD4_0350 YPD4_RS02045 415963 417045 - PTS fructose transporter subunit IIC gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02045 YPD4_RS02050 YPD4_0351 YPD4_RS02050 417410 419968 + PTS fructose transporter subunit IIA Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein HPr%3B HPr transfers the phosphoryl group to subunit A%3B subunit IIA transfers a phosphoryl group to subunit IIB%3B subunit IIB transfers the phosphoryl group to the substrate%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02050 YPD4_RS02055 YPD4_0352 YPD4_RS02055 420030 420521 - glycoprotein/receptor precursor gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02055 YPD4_RS02060 YPD4_RS02060 YPD4_RS02060 420822 421112 - autoinducer 2-degrading protein LsrG gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02060 YPD4_RS02065 YPD4_0353 YPD4_RS02065 421176 422051 - aldolase involved in autoinducer 2 transport and processing gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02065 YPD4_RS02070 YPD4_0354 YPD4_RS02070 422107 423126 - autoinducer 2-binding protein LsrB with lsrACD is involved in the transport of autoinducer 2 into the cell gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02070 YPD4_RS02075 YPD4_0355 YPD4_RS02075 423185 424186 - autoinducer 2 import system permease LsrD with IsrABC is involved with autoinducer 2 import gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02075 YPD4_RS02080 YPD4_0356 YPD4_RS02080 424183 425238 - autoinducer 2 import system permease LsrC with LsrADB is involved in the transport of autoindiuce 2 gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02080 YPD4_RS02085 YPD4_0357 YPD4_RS02085 425232 426815 - autoinducer 2 import ATP-binding protein LsrA with LsrCDB is involved in the transport of autoindiuce 2 gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02085 YPD4_RS02090 YPD4_RS02090 YPD4_RS02090 426925 427131 - membrane protein gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02090 YPD4_RS02095 YPD4_RS02095 YPD4_RS02095 427160 428147 + transcriptional regulator LsrR regulates the transcription of lsr genes%3B involved in autoinducer 2 uptake%2C biofilm formation and stress responses gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02095 YPD4_RS02100 YPD4_0359 YPD4_RS02100 428318 429910 + autoinducer 2 kinase LsrK gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02100 YPD4_RS02105 YPD4_0360 YPD4_RS02105 430256 431419 + LPS biosynthesis protein gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02105 YPD4_RS02110 YPD4_0361 YPD4_RS02110 431467 432699 + O-antigen biosynthesis protein gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02110 YPD4_RS02120 YPD4_RS02120 YPD4_RS02120 433509 433742 + hypothetical protein gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02120 YPD4_RS02125 YPD4_0362 YPD4_RS02125 433794 434876 + lipoprotein gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02125 YPD4_RS02130 YPD4_0363 YPD4_RS02130 434876 437962 + multidrug transporter AcrB gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02130 YPD4_RS02135 YPD4_RS02135 YPD4_RS02135 437998 438189 - hypothetical protein gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02135 YPD4_RS02140 YPD4_RS02140 YPD4_RS02140 438323 438619 - hypothetical protein gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02140 YPD4_RS02145 YPD4_RS02145 YPD4_RS02145 438802 439125 - hypothetical protein gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02145 YPD4_RS02150 YPD4_0364 YPD4_RS02150 439458 440543 + pectinesterase gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02150 YPD4_RS02155 YPD4_0365 YPD4_RS02155 441084 442256 - diguanylate cyclase gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02155 YPD4_RS02160 YPD4_0366 YPD4_RS02160 442505 442837 + membrane protein gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02160 YPD4_RS02165 YPD4_t5 YPD4_RS02165 443007 443093 - tRNA-Leu tRNA gene431 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02165 YPD4_RS02170 YPD4_0367 YPD4_RS02170 443350 444393 - ribosomal RNA small subunit methyltransferase C gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02170 YPD4_RS02175 YPD4_0368 YPD4_RS02175 444506 444943 + DNA polymerase III subunit psi with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02175 YPD4_RS02180 YPD4_RS02180 rimI rimI 444888 445331 + ribosomal-protein-alanine N-acetyltransferase alanine acetyltransferase that specifically acetylates ribosomal protein S18 gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02180 YPD4_RS02185 YPD4_0370 prfC prfC 445510 447099 + peptide chain release factor 3 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred%3B GDP/GTP-binding protein gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02185 YPD4_RS02190 YPD4_0371 YPD4_RS02190 447426 448040 + hypothetical protein gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02190 YPD4_RS02195 YPD4_RS02195 YPD4_RS02195 448207 448368 + membrane protein gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02195 YPD4_RS02200 YPD4_0372 YPD4_RS02200 448445 449713 + alpha/beta hydrolase gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02200 YPD4_RS02205 YPD4_0373 YPD4_RS02205 449750 450538 + DNAse gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02205 YPD4_RS02210 YPD4_0374 YPD4_RS02210 451067 452344 + nucleoside transporter NupC gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02210 YPD4_RS02215 YPD4_0375 YPD4_RS02215 452920 453717 + deoxyribose-phosphate aldolase 2 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02215 YPD4_RS02220 YPD4_0376 YPD4_RS02220 453838 454380 + thymidine phosphorylase gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02220 YPD4_RS02225 YPD4_0377 YPD4_RS02225 454377 455156 + thymidine phosphorylase gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02225 YPD4_RS02230 YPD4_0378 YPD4_RS02230 455288 456511 + phosphopentomutase gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02230 YPD4_RS02235 YPD4_0379 deoD deoD 456636 457355 + purine nucleoside phosphorylase catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02235 YPD4_RS02240 YPD4_0380 YPD4_RS02240 457467 458168 - protein Smp gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02240 YPD4_RS02245 YPD4_0381 serB serB 458400 459380 + phosphoserine phosphatase catalyzes the formation of serine from O-phosphoserine gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02245 YPD4_RS02250 YPD4_0382 YPD4_RS02250 459468 460850 + DNA repair protein RadA Sms%3B stabilizes the strand-invasion intermediate during the DNA repair%3B involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02250 YPD4_RS02255 YPD4_0383 YPD4_RS02255 461009 462280 + nicotinamide-nucleotide adenylyltransferase catalyzes the formation of NAD(+) from nicotinamide ribonucleotide%3B catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside%3B also has a regulatory function gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02255 YPD4_RS02260 YPD4_0384 YPD4_RS02260 462437 463567 + cell division protein Fic gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02260 YPD4_RS02265 YPD4_RS02265 YPD4_RS02265 463713 465355 - ABC transporter ATP-binding protein ChvD%3B in Agrobacterium tumefaciens%2C mutations in both Walker boxes were found to affect virulence gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02265 YPD4_RS02270 YPD4_0387 YPD4_RS02270 465559 466065 - lipoprotein gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02270 YPD4_RS02275 YPD4_0388 YPD4_RS02275 466071 467372 - diguanylate cyclase gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02275 YPD4_RS02280 YPD4_0389 YPD4_RS02280 467369 467992 - hypothetical protein gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02280 YPD4_RS02285 YPD4_0390 YPD4_RS02285 468367 471093 - carbonate dehydratase gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02285 YPD4_RS02290 YPD4_0391 YPD4_RS02290 471663 473582 + murein transglycosylase catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02290 YPD4_RS02295 YPD4_0392 YPD4_RS02295 473818 474210 + Trp operon repressor gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02295 YPD4_RS02300 YPD4_0393 yjjX yjjX 474207 474749 - non-canonical purine NTP phosphatase pyrophosphatase%3B has activity against dUTP and dITP%3B the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226%3B in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms%3B in Escherichia coli overexpression of this gene leads to resistance to an HMP analog gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02300 YPD4_RS02305 YPD4_0394 YPD4_RS02305 474843 475490 + phosphoglycerate mutase GpmB catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02305 YPD4_RS02310 YPD4_0395 YPD4_RS02310 475487 476353 - RobA family efflux pump transcriptional activator AraC family%3B binds to the right arm of the replication origin oriC gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02310 YPD4_RS02315 YPD4_0396 YPD4_RS02315 476579 477046 + hypothetical protein gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02315 YPD4_RS02320 YPD4_0397 YPD4_RS02320 477220 477936 - two-component system response regulator gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02320 YPD4_RS02325 YPD4_RS02325 thrA thrA 479040 481498 + aspartate kinase multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02325 YPD4_RS02330 YPD4_0400 YPD4_RS02330 481501 482430 + homoserine kinase gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02330 YPD4_RS02335 YPD4_0401 YPD4_RS02335 482434 483723 + threonine synthase gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02335 YPD4_RS02340 YPD4_0402 YPD4_RS02340 484540 485316 - hypothetical protein gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02340 YPD4_RS02345 YPD4_0403 YPD4_RS02345 485848 486801 + transaldolase gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02345 YPD4_RS02350 YPD4_0404 mogA mogA 487089 487676 + molybdenum cofactor biosynthesis protein MogA forms a trimer%3B related to eukaryotic protein gephyrin%3B functions during molybdenum cofactor biosynthesis gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02350 YPD4_RS02355 YPD4_0405 YPD4_RS02355 487804 489192 + MFS transporter gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02355 YPD4_RS02360 YPD4_0406 YPD4_RS02360 489262 491709 - GNAT family acetyltransferase gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02360 YPD4_RS02365 YPD4_0407 YPD4_RS02365 491998 492609 - hypothetical protein gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02365 YPD4_RS02370 YPD4_0408 dnaK dnaK 492983 494893 + molecular chaperone DnaK heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02370 YPD4_RS02375 YPD4_0409 YPD4_RS02375 495005 496144 + molecular chaperone DnaJ chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02375 YPD4_RS02380 YPD4_0410 nhaA nhaA 496387 497572 + sodium:proton antiporter exports sodium by using the electrochemical proton gradient to allow protons into the cell%3B functions in adaptation to high salinity and alkaline pH%3B activity increases at higher pH%3B downregulated at acidic pH gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02380 YPD4_RS02385 YPD4_0411 nhaR nhaR 497702 498601 + transcriptional regulator Na+/H+ antiporter regulatory protein%3B activates the genes nhaA and osmC gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02385 YPD4_RS02390 YPD4_RS02390 rpsT rpsT 498732 498995 - 30S ribosomal protein S20 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02390 YPD4_RS02395 YPD4_RS02395 YPD4_RS02395 499017 499193 - hypothetical protein gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02395 YPD4_RS02400 YPD4_0412 YPD4_RS02400 499410 500348 + riboflavin biosynthesis protein RibF gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02400 YPD4_RS02405 YPD4_0413 ileS ileS 500380 503196 + isoleucine--tRNA ligase IleRS%3B catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile)%3B since isoleucine and other amino acids such as valine are similar%2C there are additional editing function in this enzyme%3B one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile)%3B there are two active sites%2C one for aminoacylation and one for editing%3B class-I aminoacyl-tRNA synthetase family type 1 subfamily%3B some organisms carry two different copies of this enzyme gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02405 YPD4_RS02410 YPD4_0414 lspA lspA 503196 503705 + lipoprotein signal peptidase lipoprotein signal peptidase%3B integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02410 YPD4_RS02415 YPD4_0415 YPD4_RS02415 503773 504231 + peptidyl-prolyl cis-trans isomerase rotamase%3B accelerates isomerization of the peptidyl prolyl bond%2C involved in the folding of proteases gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02415 YPD4_RS02420 YPD4_0416 ispH ispH 504212 505165 + 4-hydroxy-3-methylbut-2-enyl diphosphate reductase catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP)%3B functions in the nonmevalonate isoprenoid biosynthesis pathway gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02420 YPD4_RS02425 YPD4_RS02425 YPD4_RS02425 505233 505358 + hypothetical protein gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02425 YPD4_RS02430 YPD4_RS02430 YPD4_RS02430 505387 505557 + invasin gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02430 YPD4_RS02435 YPD4_0417 YPD4_RS02435 505547 506005 + transposase gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02435 YPD4_RS02440 YPD4_0418 YPD4_RS02440 506458 507279 + 4-hydroxy-tetrahydrodipicolinate reductase catalyzes the reduction of 2%2C3-dihydrodipicolinate to 2%2C3%2C4%2C5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02440 YPD4_RS02445 YPD4_0419 YPD4_RS02445 507752 508927 + carbamoyl-phosphate synthase small chain catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways%3B forms an octamer composed of four CarAB dimers gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02445 YPD4_RS02450 YPD4_0420 carB carB 508943 512176 + carbamoyl-phosphate synthase large chain four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate%3B CarB is responsible for the amidotransferase activity gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02450 YPD4_RS02455 YPD4_0421 YPD4_RS02455 512404 513018 - lysine transporter LysE gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02455 YPD4_RS02460 YPD4_0422 YPD4_RS02460 513342 514142 + membrane protein gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02460 YPD4_RS02465 YPD4_0423 YPD4_RS02465 514139 514594 + hypothetical protein gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02465 YPD4_RS02470 YPD4_0424 folA folA 514744 515226 + dihydrofolate reductase catalyzes the reduction of dihydrofolate to tetrahydrofolate gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02470 YPD4_RS02475 YPD4_RS02475 YPD4_RS02475 515293 515448 + invasin gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02475 YPD4_RS02480 YPD4_0425 YPD4_RS02480 515438 515896 + transposase gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02480 YPD4_RS02485 YPD4_RS02485 YPD4_RS02485 516431 516652 + hypothetical protein gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02485 YPD4_RS02490 YPD4_0426 YPD4_RS02490 516779 517243 + hypothetical protein gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02490 YPD4_RS02495 YPD4_0427 apaH apaH 517333 518202 - bis(5'-nucleosyl)-tetraphosphatase symmetrical hydrolyzes P(1)%2CP(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02495 YPD4_RS02500 YPD4_0428 apaG apaG 518219 518596 - protein ApaG protein associated with Co2+ and Mg2+ efflux gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02500 YPD4_RS02505 YPD4_0429 ksgA ksgA 518610 519428 - ribosomal RNA small subunit methyltransferase A in Escherichia coli this enzyme catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA%3B mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin%3B members of this protein family have secondary functions gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02505 YPD4_RS02510 YPD4_0430 pdxA pdxA 519421 520416 - 4-hydroxythreonine-4-phosphate dehydrogenase catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02510 YPD4_RS02515 YPD4_0431 YPD4_RS02515 520400 521704 - chaperone SurA Chaperone involved in the folding of extracytoplasmic proteins%2C especially OmpA%2C OmpF and LamB gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02515 YPD4_RS02520 YPD4_0432 YPD4_RS02520 521772 524114 - LPS-assembly protein LptD is involved in outer membrane permeability gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02520 YPD4_RS02525 YPD4_0433 djlA djlA 524299 525132 + dnaJ-like protein DjlA functions as a co-chaperone with DnaK%3B involved in regulation of colanic acid capsule%3B inner membrane protein%3B dimerized via transmembrane domain%3B J-like domain is cytoplasmic and can functionally substitute for DnaJ%3B stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02525 YPD4_RS02530 YPD4_0434 YPD4_RS02530 525430 526050 - ribosomal large subunit pseudouridine synthase A catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02530 YPD4_RS02535 YPD4_0435 YPD4_RS02535 527273 528016 - hypothetical protein gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02535 YPD4_RS02540 YPD4_0436 YPD4_RS02540 528346 529359 + membrane protein gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02540 YPD4_RS02545 YPD4_0437 YPD4_RS02545 529370 529930 + hypothetical protein gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02545 YPD4_RS02550 YPD4_0438 YPD4_RS02550 529939 531441 + type VI secretion protein EvpB gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02550 YPD4_RS02555 YPD4_0439 YPD4_RS02555 531604 532122 + type VI secretion protein gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02555 YPD4_RS02560 YPD4_0440 YPD4_RS02560 532196 532639 + lysozyme gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02560 YPD4_RS02565 YPD4_0441 YPD4_RS02565 532672 534516 + type VI secretion protein TssF gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02565 YPD4_RS02570 YPD4_0442 YPD4_RS02570 534509 535492 + type VI secretion protein gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02570 YPD4_RS02575 YPD4_0443 YPD4_RS02575 535510 538098 + peptidase gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02575 YPD4_RS02580 YPD4_0444 YPD4_RS02580 538202 540550 + type IV secretion protein Rhs gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02580 YPD4_RS02585 YPD4_0445 YPD4_RS02585 540563 541135 + hypothetical protein gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02585 YPD4_RS02590 YPD4_0446 YPD4_RS02590 541160 542782 + hypothetical protein gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02590 YPD4_RS02595 YPD4_0447 YPD4_RS02595 542808 543911 + hypothetical protein gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02595 YPD4_RS02600 YPD4_0448 YPD4_RS02600 543904 544521 + hypothetical protein gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02600 YPD4_RS02605 YPD4_0449 YPD4_RS02605 544527 544892 + type VI secretion protein gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02605 YPD4_RS02610 YPD4_0450 YPD4_RS02610 544885 545376 + lipoprotein gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02610 YPD4_RS02615 YPD4_0451 YPD4_RS02615 545496 546851 + type VI secretion protein gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02615 YPD4_RS02620 YPD4_0452 YPD4_RS02620 546848 548458 + hypothetical protein gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02620 YPD4_RS02625 YPD4_0453 YPD4_RS02625 548520 551960 + membrane protein gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02625 YPD4_RS02630 YPD4_0454 YPD4_RS02630 551982 552335 + hypothetical protein gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02630 YPD4_RS02635 YPD4_0455 YPD4_RS02635 552591 555497 - RNA polymerase-associated protein RapA transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP%2C when it is trapped or immobilized on tightly supercoiled DNA gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02635 YPD4_RS02640 YPD4_0456 YPD4_RS02640 555958 558327 - DNA polymerase II Has polymerase%2C DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02640 YPD4_RS02645 YPD4_0457 YPD4_RS02645 558523 559290 + membrane protein gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02645 YPD4_RS02650 YPD4_0458 thiQ thiQ 559359 560069 - thiamine import ATP-binding protein ThiQ with TbpA and ThiP is part of the thiamine and TPP transport system gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02650 YPD4_RS02655 YPD4_0459 thiP thiP 560056 561663 - thiamine transporter membrane protein permease%3B with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell%3B repressed in presence of exogenous thiamine gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02655 YPD4_RS02660 YPD4_0460 tbpA tbpA 561639 562685 - thiamine ABC transporter substrate-binding protein part of the thiamine and TPP transport system tbpA-thiPQ gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02660 YPD4_RS02665 YPD4_RS02665 YPD4_RS02665 563186 563470 + membrane protein gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02665 YPD4_RS02670 YPD4_0461 YPD4_RS02670 563571 565232 - transcriptional regulator activates sgrS under glucose-phosphate stress conditions gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02670 YPD4_RS02675 YPD4_RS02675 YPD4_RS02675 565470 565643 + hypothetical protein gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02675 YPD4_RS02680 YPD4_0462 YPD4_RS02680 565896 566828 + sugar transporter gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02680 YPD4_RS02685 YPD4_0463 YPD4_RS02685 566896 567675 - transposase gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02685 YPD4_RS02690 YPD4_0464 YPD4_RS02690 567675 568697 - transposase gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02690 YPD4_RS02695 YPD4_RS02695 YPD4_RS02695 568785 569036 + sugar transporter gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02695 YPD4_RS02700 YPD4_0465 leuD leuD 569277 569879 - 3-isopropylmalate dehydratase small subunit catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis%3B forms a heterodimer of LeuC/D gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02700 YPD4_RS02705 YPD4_0466 YPD4_RS02705 569894 571324 - 3-isopropylmalate dehydratase large subunit dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02705 YPD4_RS02710 YPD4_0467 YPD4_RS02710 571326 572417 - 3-isopropylmalate dehydrogenase gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02710 YPD4_RS02715 YPD4_0468 YPD4_RS02715 572420 573982 - 2-isopropylmalate synthase gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02715 YPD4_RS02720 YPD4_RS02720 YPD4_RS02720 574129 574374 - transposase gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02720 YPD4_RS02725 YPD4_RS02725 YPD4_RS02725 574371 574637 - transposase gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02725 YPD4_RS02730 YPD4_RS02730 YPD4_RS02730 574576 574746 - hypothetical protein gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02730 YPD4_RS02735 YPD4_0469 leuO leuO 575908 576864 + leucine transcriptional activator activator for leuABCD operon%3B member of LysR family of transcriptional activators gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02735 YPD4_RS02740 YPD4_RS02740 YPD4_RS02740 577198 577404 + hypothetical protein gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02740 YPD4_RS02745 YPD4_0470 YPD4_RS02745 577401 579206 + long-chain fatty acid--CoA ligase gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02745 YPD4_RS02750 YPD4_RS02750 YPD4_RS02750 579237 579347 + hypothetical protein gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02750 YPD4_RS02755 YPD4_0471 YPD4_RS02755 579666 581393 + acetolactate synthase catalyzes the formation of 2-acetolactate from pyruvate%2C leucine sensitive gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02755 YPD4_RS02760 YPD4_0472 ilvH ilvH 581396 581890 + acetolactate synthase with IlvI catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase 3 small subunit gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02760 YPD4_RS02765 YPD4_0473 YPD4_RS02765 582089 582547 + transposase gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02765 YPD4_RS02770 YPD4_RS02770 YPD4_RS02770 582869 582985 - hypothetical protein gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02770 YPD4_RS02775 YPD4_0474 YPD4_RS02775 583052 584062 + transcriptional regulator binds D-fructose as an inducer%3B involved in regulation of operons for central pathways of carbon metabolism gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02775 YPD4_RS02780 YPD4_0475 YPD4_RS02780 584193 584633 - alanine transporter gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02780 YPD4_RS02785 YPD4_0476 YPD4_RS02785 585745 586203 + transcriptional regulator MraZ gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02785 YPD4_RS02790 YPD4_0477 YPD4_RS02790 586206 587168 + ribosomal RNA small subunit methyltransferase H gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02790 YPD4_RS02795 YPD4_0478 YPD4_RS02795 587165 587482 + cell division protein FtsL gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02795 YPD4_RS02800 YPD4_0479 YPD4_RS02800 587548 589311 + penicillin-binding protein 3 penicillin-binding protein 3%3B transpeptidase involved in septal peptidoglycan synthesis gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02800 YPD4_RS02805 YPD4_0480 murE murE 589298 590785 + UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C 6-diaminopimelate ligase involved in cell wall formation%3B peptidoglycan synthesis%3B cytoplasmic enzyme%3B catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02805 YPD4_RS02810 YPD4_0481 murF murF 590782 592158 + UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02810 YPD4_RS02815 YPD4_0482 mraY mraY 592152 593234 + phospho-N-acetylmuramoyl-pentapeptide transferase First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02815 YPD4_RS02820 YPD4_0483 murD murD 593237 594553 + UDP-N-acetylmuramoylalanine--D-glutamate ligase UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B involved in peptidoglycan biosynthesis%3B cytoplasmic%3B catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02820 YPD4_RS02825 YPD4_0484 YPD4_RS02825 594553 595755 + cell division protein FtsW integral membrane protein involved in stabilizing FstZ ring during cell division gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02825 YPD4_RS02830 YPD4_0485 murG murG 595752 596822 + UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase N-acetylglucosaminyl transferase%3B UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B involved in cell wall formation%3B inner membrane-associated%3B last step of peptidoglycan synthesis gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02830 YPD4_RS02835 YPD4_0486 YPD4_RS02835 596960 598435 + UDP-N-acetylmuramate--L-alanine ligase gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02835 YPD4_RS02840 YPD4_0487 ddl ddl 598428 599348 + D-alanine--D-alanine ligase D-alanine--D-alanine ligase%3B DdlA%3B DdlB%3B cytoplasmic%3B catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis%3B there are two forms of this enzyme in Escherichia coli gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02840 YPD4_RS02845 YPD4_0488 YPD4_RS02845 599350 600177 + cell division protein FtsQ involved in septum formation gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02845 YPD4_RS02850 YPD4_0489 ftsA ftsA 600204 601460 + cell division protein FtsA ATP-binding involved in recruitment of FtsK to Z ring%3B essential cell division protein%3B colocalizes with FtsZ through direct interaction to the septal ring structure%3B structurally similar to eukaryotic actin%3B binds directly to the cell membrane gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02850 YPD4_RS02855 YPD4_0490 YPD4_RS02855 601533 602684 + cell division protein FtsZ GTPase%3B similar structure to tubulin%3B forms ring-shaped polymers at the site of cell division%3B other proteins such as FtsA%2C ZipA%2C and ZapA%2C interact with and regulate FtsZ function gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02855 YPD4_RS02860 YPD4_0491 lpxC lpxC 602784 603704 + UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase zinc-dependent%3B catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02860 YPD4_RS02865 YPD4_0492 YPD4_RS02865 603871 604395 - hypothetical protein gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02865 YPD4_RS02870 YPD4_0493 YPD4_RS02870 604424 604957 + secretion monitor gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02870 YPD4_RS02875 YPD4_0494 secA secA 605035 607749 + protein translocase subunit SecA functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B proteins in this cluster correspond SecA1%3B SecA2 is not essential and seems to play a role in secretion of a subset of proteins gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02875 YPD4_RS02880 YPD4_0495 YPD4_RS02880 608044 608430 + nucleoside triphosphate pyrophosphohydrolase gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02880 YPD4_RS02885 YPD4_0496 YPD4_RS02885 608692 609471 - transposase gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02885 YPD4_RS02890 YPD4_0497 YPD4_RS02890 609471 610493 - transposase gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02890 YPD4_RS02895 YPD4_RS02895 YPD4_RS02895 610507 610686 - glutathione S-transferase gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02895 YPD4_RS02900 YPD4_0498 YPD4_RS02900 610771 611166 - membrane protein gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02900 YPD4_RS02905 YPD4_RS02905 YPD4_RS02905 611470 611754 - cell division protein FtsH gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02905 YPD4_RS02910 YPD4_0499 YPD4_RS02910 611751 612146 - membrane protein gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02910 YPD4_RS02915 YPD4_0500 YPD4_RS02915 612149 612454 - membrane protein gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02915 YPD4_RS02920 YPD4_RS02920 YPD4_RS02920 612459 612605 - hypothetical protein gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02920 YPD4_RS02925 YPD4_0501 YPD4_RS02925 612609 612989 - hypothetical protein gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02925 YPD4_RS02930 YPD4_0502 YPD4_RS02930 613216 613605 - modulator protein MzrA gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02930 YPD4_RS02935 YPD4_0503 YPD4_RS02935 613602 614300 - membrane protein gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02935 YPD4_RS02940 YPD4_0504 YPD4_RS02940 614578 615111 - hypothetical protein gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02940 YPD4_RS02945 YPD4_0505 YPD4_RS02945 615360 616154 - GntR family transcriptional regulator regulates the expression of uxuBA gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02945 YPD4_RS02950 YPD4_0506 YPD4_RS02950 616417 617718 - hexuronate transporter ExuT involved in the transport of aldohexuronates gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02950 YPD4_RS02955 YPD4_RS02955 YPD4_RS02955 617768 617935 + hypothetical protein gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02955 YPD4_RS02960 YPD4_0507 YPD4_RS02960 618466 619875 + uronate isomerase catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate%3B functions in glucuronic and galacturonic metabolism gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02960 YPD4_RS02965 YPD4_0508 YPD4_RS02965 620074 621525 + altronate oxidoreductase catalyzes the formation of D-tagaturonate from D-altronate gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02965 YPD4_RS02970 YPD4_0509 YPD4_RS02970 621536 623025 + altronate hydrolase gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02970 YPD4_RS02975 YPD4_0510 YPD4_RS02975 623178 623708 + membrane protein gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02975 YPD4_RS02980 YPD4_0511 YPD4_RS02980 623826 624284 - transposase gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02980 YPD4_RS02985 YPD4_0512 YPD4_RS02985 624485 625742 - serine/threonine protein kinase gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02985 YPD4_RS02990 YPD4_0513 YPD4_RS02990 626277 627272 - oxidoreductase gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02990 YPD4_RS02995 YPD4_0514 YPD4_RS02995 627475 627984 - hypothetical protein gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS02995 YPD4_RS03000 YPD4_0515 YPD4_RS03000 628223 631036 - autotransporter gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03000 YPD4_RS03005 YPD4_0516 YPD4_RS03005 631676 632863 + ribosomal RNA large subunit methyltransferase G gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03005 YPD4_RS03010 YPD4_0517 fadH fadH 632979 635000 - 2%2C4-dienoyl-CoA reductase catalyzes the formation of trans-2- enoyl-CoA from 2%2C4-dienoyl-CoA gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03010 YPD4_RS03015 YPD4_0518 YPD4_RS03015 635213 635782 - hypothetical protein gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03015 YPD4_RS03020 YPD4_RS03020 YPD4_RS03020 635878 636111 + hypothetical protein gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03020 YPD4_RS03025 YPD4_0519 YPD4_RS03025 636173 637672 - kinase gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03025 YPD4_RS03030 YPD4_0520 YPD4_RS03030 637704 639437 - hypothetical protein gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03030 YPD4_RS03035 YPD4_0521 YPD4_RS03035 639493 640476 - hypothetical protein gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03035 YPD4_RS03040 YPD4_0522 YPD4_RS03040 640578 641216 - tellerium resistance protein TerY gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03040 YPD4_RS03045 YPD4_0523 YPD4_RS03045 641218 641859 - tellurium resistance protein TerX gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03045 YPD4_RS03050 YPD4_0524 YPD4_RS03050 641892 642530 - tellerium resistance protein TerY gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03050 YPD4_RS03055 YPD4_0525 YPD4_RS03055 643245 644933 + outer membrane transporter CdiB gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03055 YPD4_RS03060 YPD4_0526 YPD4_RS03060 644978 654866 + adhesin gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03060 YPD4_RS03065 YPD4_RS03065 YPD4_RS03065 654863 655096 + immunity protein CdiI gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03065 YPD4_RS03070 YPD4_RS03070 YPD4_RS03070 655158 655307 + adhesin gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03070 YPD4_RS03075 YPD4_RS03075 YPD4_RS03075 655362 655589 + hypothetical protein gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03075 YPD4_RS03080 YPD4_RS03080 YPD4_RS03080 655670 656101 + hypothetical protein gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03080 YPD4_RS03085 YPD4_0527 YPD4_RS03085 656134 656889 + hemagglutinin gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03085 YPD4_RS03090 YPD4_RS03090 YPD4_RS03090 656953 657117 + adhesin gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03090 YPD4_RS03095 YPD4_0528 YPD4_RS03095 657385 659670 - autotransporter gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03095 YPD4_RS03100 YPD4_0529 YPD4_RS03100 659730 660725 - hypothetical protein gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03100 YPD4_RS03105 YPD4_0530 YPD4_RS03105 660827 662131 - membrane protein gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03105 YPD4_RS03110 YPD4_0531 YPD4_RS03110 662533 663648 + sugar ABC transporter ATP-binding protein gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03110 YPD4_RS03115 YPD4_0532 YPD4_RS03115 663731 667084 + hypothetical protein gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03115 YPD4_RS03120 YPD4_0533 YPD4_RS03120 667193 668179 + LacI family transcriptional regulator gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03120 YPD4_RS03125 YPD4_0534 YPD4_RS03125 668256 669500 + ABC transporter substrate-binding protein gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03125 YPD4_RS03130 YPD4_0535 YPD4_RS03130 669554 670435 + permease gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03130 YPD4_RS03135 YPD4_0536 YPD4_RS03135 670435 671253 + permease gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03135 YPD4_RS03140 YPD4_0537 YPD4_RS03140 671250 671765 + hypothetical protein gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03140 YPD4_RS03145 YPD4_0538 YPD4_RS03145 671816 673999 + glycosyl hydrolase gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03145 YPD4_RS03150 YPD4_0539 YPD4_RS03150 674063 675589 - transporter gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03150 YPD4_RS03155 YPD4_0540 YPD4_RS03155 675594 677495 - fusaric acid resistance protein gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03155 YPD4_RS03160 YPD4_0541 YPD4_RS03160 677479 678528 - multidrug resistance protein MdtN gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03160 YPD4_RS03165 YPD4_RS03165 YPD4_RS03165 678538 678873 - membrane protein gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03165 YPD4_RS03170 YPD4_RS03170 YPD4_RS03170 678870 679070 - hypothetical protein gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03170 YPD4_RS03175 YPD4_RS03175 YPD4_RS03175 679243 679350 - hypothetical protein gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03175 YPD4_RS03180 YPD4_0542 YPD4_RS03180 679836 681068 + aminotransferase gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03180 YPD4_RS03185 YPD4_0543 YPD4_RS03185 681061 682512 + sodium:proton antiporter gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03185 YPD4_RS03190 YPD4_0544 YPD4_RS03190 682525 682962 + polyketide cyclase gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03190 YPD4_RS03195 YPD4_0545 YPD4_RS03195 683096 683722 + histidine kinase gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03195 YPD4_RS03200 YPD4_0546 YPD4_RS03200 683738 684118 + reactive intermediate/imine deaminase gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03200 YPD4_RS03205 YPD4_0547 YPD4_RS03205 684403 684807 + enamine deaminase RidA gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03205 YPD4_RS03210 YPD4_0548 YPD4_RS03210 685022 685324 - monooxygenase gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03210 YPD4_RS03215 YPD4_0549 YPD4_RS03215 685584 686300 - protein-disulfide isomerase gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03215 YPD4_RS03220 YPD4_0550 YPD4_RS03220 686462 687394 + LysR family transcriptional regulator gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03220 YPD4_RS03225 YPD4_RS03225 YPD4_RS03225 687845 688048 + hypothetical protein gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03225 YPD4_RS03230 YPD4_RS03230 YPD4_RS03230 688144 688356 + cell filamentation protein Fic gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03230 YPD4_RS03235 YPD4_RS03235 YPD4_RS03235 688353 688511 - hypothetical protein gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03235 YPD4_RS03240 YPD4_RS03240 YPD4_RS03240 688709 688909 - hypothetical protein gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03240 YPD4_RS03245 YPD4_RS03245 YPD4_RS03245 689067 689297 + hypothetical protein gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03245 YPD4_RS03250 YPD4_0551 YPD4_RS03250 689430 690812 + HNH endonuclease gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03250 YPD4_RS03255 YPD4_0552 YPD4_RS03255 690821 691291 + hypothetical protein gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03255 YPD4_RS03260 YPD4_0553 YPD4_RS03260 691318 691773 + hypothetical protein gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03260 YPD4_RS03265 YPD4_RS03265 YPD4_RS03265 691790 692080 + hypothetical protein gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03265 YPD4_RS03270 YPD4_0554 YPD4_RS03270 692058 692396 + terminase gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03270 YPD4_RS03275 YPD4_t6 YPD4_RS03275 692642 692718 - tRNA-Met tRNA gene653 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03275 YPD4_RS03280 YPD4_0555 YPD4_RS03280 692914 694752 - RNA polymerase sigma factor RpoD sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this is the primary sigma factor of bacteria gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03280 YPD4_RS03285 YPD4_RS03285 dnaG dnaG 694910 696659 - DNA primase synthesizes RNA primers at the replication forks gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03285 YPD4_RS03290 YPD4_RS03290 rpsU rpsU 696795 697010 - 30S ribosomal protein S21 a small basic protein that is one of the last in the subunit assembly%3B omission does not prevent assembly but the subunit is inactive%3B binds central domain of 16S rRNA gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03290 YPD4_RS03295 YPD4_0558 YPD4_RS03295 697416 698429 + tRNA N6-adenosine threonylcarbamoyltransferase universal genome maintenance protein%3B Kae1/Qri7/OSGEP/YgjD family protein%3B in Archaea%2C some Kae1 are found as fusion proteins similar to two distinct proteins in yeast that are involved in the KEOPS complex%3B kinase associated endopeptidase 1 (Kae1) and a serine/threonine protein kinase (Bud32)%3B in Pyrococcus Kae1 has atypical AP endonuclease activity and inhibits the kinase activity of Bud32%3B the protein is essential in Escherichia coli and Bacillus subtilis gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03295 YPD4_RS03300 YPD4_0559 YPD4_RS03300 698675 699325 - glycerol-3-phosphate acyltransferase involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsX gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03300 YPD4_RS03305 YPD4_0560 folB folB 699433 699792 + dihydroneopterin triphosphate 2'-epimerase catalyzes the conversion of 7%2C8-dihydroneopterin to 6-hydroxymethyl-7%2C8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03305 YPD4_RS03310 YPD4_0561 YPD4_RS03310 700066 700884 + undecaprenyl-diphosphatase BacA%3B phosphatase activity in Escherichia coli not kinase%3B involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03310 YPD4_RS03315 YPD4_RS03315 YPD4_RS03315 701120 702359 - tRNA nucleotidyl transferase gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03315 YPD4_RS03320 YPD4_0564 YPD4_RS03320 702519 703142 - signal transduction protein gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03320 YPD4_RS03325 YPD4_0565 YPD4_RS03325 703446 704753 + hypothetical protein gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03325 YPD4_RS03330 YPD4_0566 YPD4_RS03330 704924 707779 + glutamate--ammonia-ligase adenylyltransferase catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase%3B also catalyzes the reverse reaction - deadenylation%3B adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03330 YPD4_RS03335 YPD4_0567 YPD4_RS03335 707914 709344 + bifunctional protein HldE catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D%2CD-heptose-1%2C7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D%2CD-heptose gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03335 YPD4_RS03340 YPD4_0568 YPD4_RS03340 709381 710632 + transporter uncharacterized member of the APC superfamily of amino acid transporters%3B unknown function gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03340 YPD4_RS03345 YPD4_RS03345 YPD4_RS03345 710957 711238 - hypothetical protein gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03345 YPD4_RS03350 YPD4_RS03350 YPD4_RS03350 711274 711618 - hypothetical protein gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03350 YPD4_RS03355 YPD4_0569 ribB ribB 711807 712460 + 3%2C4-dihydroxy-2-butanone 4-phosphate synthase DHBP synthase%3B functions during riboflavin biosynthesis gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03355 YPD4_RS03360 YPD4_0570 YPD4_RS03360 712919 713701 + LigB family dioxygenase seems to be involved in biofilm formation%3B in asymptomatic bacteriuria E. coli strains 83972 and VR50%2C the ygiD gene is upregulated during biofilm formation in urine gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03360 YPD4_RS03365 YPD4_RS03365 YPD4_RS03365 714108 715269 - hypothetical protein gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03365 YPD4_RS03370 YPD4_0573 YPD4_RS03370 715279 715962 - membrane protein gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03370 YPD4_RS03375 YPD4_RS03375 YPD4_RS03375 716031 716201 + hypothetical protein gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03375 YPD4_RS03380 YPD4_0574 YPD4_RS03380 716266 717663 - outer membrane channel protein gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03380 YPD4_RS03385 YPD4_0575 nudF nudF 718059 718691 + ADP-ribose pyrophosphatase ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03385 YPD4_RS03390 YPD4_0576 YPD4_RS03390 718725 719150 + dehydrogenase gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03390 YPD4_RS03395 YPD4_0577 YPD4_RS03395 719232 720059 + 3'%2C5'-cyclic-nucleotide phosphodiesterase gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03395 YPD4_RS03400 YPD4_0578 YPD4_RS03400 720059 720640 + esterase Displays esterase activity toward palmitoyl-CoA and pNP-butyrate gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03400 YPD4_RS03405 YPD4_0579 YPD4_RS03405 720742 722637 + DNA topoisomerase IV subunit B decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03405 YPD4_RS03410 YPD4_0580 YPD4_RS03410 722641 723552 + LysR family transcriptional regulator gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03410 YPD4_RS03415 YPD4_0581 YPD4_RS03415 723610 724194 - NADPH quinone reductase MdaB involved in drug resistance gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03415 YPD4_RS03420 YPD4_0582 YPD4_RS03420 724498 726771 + DNA topoisomerase IV subunit A decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03420 YPD4_RS03425 YPD4_0583 YPD4_RS03425 727060 727791 + acyltransferase gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03425 YPD4_RS03430 YPD4_0584 YPD4_RS03430 727970 729394 + cell division protein FtsP septal ring component that protects the divisome from stress gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03430 YPD4_RS03435 YPD4_RS03435 YPD4_RS03435 729702 732046 + YgiQ family radical SAM protein gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03435 YPD4_RS03440 YPD4_0587 dkgA dkgA 732068 732901 - 2%2C5-diketo-D-gluconic acid reductase A methylglyoxal reductase/beta-keto ester reductase%3B catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid%3B also catalyzes the reduction of methylglyoxal%2C ethyl-2-methylacetoacetate and ethyl-acetoacetate gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03440 YPD4_RS03445 YPD4_RS03445 YPD4_RS03445 733048 733257 + hypothetical protein gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03445 YPD4_RS03450 YPD4_0588 YPD4_RS03450 733320 734477 - aldehyde oxidoreductase gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03450 YPD4_RS03455 YPD4_0589 YPD4_RS03455 734875 735768 + AraC family transcriptional regulator gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03455 YPD4_RS03460 YPD4_0590 YPD4_RS03460 735860 736522 - membrane protein gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03460 YPD4_RS03465 YPD4_0591 YPD4_RS03465 736715 737926 - cystathionine beta-lyase catalyzes the formation of L-homocysteine from cystathionine gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03465 YPD4_RS03470 YPD4_RS03470 YPD4_RS03470 738729 739442 + biopolymer transporter ExbB membrane spanning protein in TonB-ExbB-ExbD complex%3B involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03470 YPD4_RS03475 YPD4_0593 YPD4_RS03475 739446 739877 + biopolymer transporter ExbD membrane spanning protein in TonB-ExbB-ExbD complex%3B involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03475 YPD4_RS03480 YPD4_0594 YPD4_RS03480 739974 741530 - hypothetical protein gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03480 YPD4_RS03485 YPD4_0595 YPD4_RS03485 741555 742127 - pseudopilin gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03485 YPD4_RS03490 YPD4_0596 YPD4_RS03490 742111 742584 - pilus biosynthesis protein TadE gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03490 YPD4_RS03495 YPD4_0597 YPD4_RS03495 742581 743351 - tight adherance operon protein gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03495 YPD4_RS03500 YPD4_RS03500 YPD4_RS03500 743335 744169 - tight adherance operon protein gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03500 YPD4_RS03505 YPD4_0599 YPD4_RS03505 744166 745041 - tight adherance operon protein gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03505 YPD4_RS03510 YPD4_0600 YPD4_RS03510 745038 746324 - tight adherance operon protein gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03510 YPD4_RS03515 YPD4_0601 YPD4_RS03515 746336 747463 - pilus assembly protein CpaE gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03515 YPD4_RS03520 YPD4_RS03520 YPD4_RS03520 747474 747764 - hypothetical protein gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03520 YPD4_RS03525 YPD4_0602 YPD4_RS03525 747761 748210 - secretion protein gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03525 YPD4_RS03530 YPD4_0603 YPD4_RS03530 748225 749079 - pilus assembly protein CpaC gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03530 YPD4_RS03535 YPD4_0604 YPD4_RS03535 749076 749942 - tight adherance operon protein gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03535 YPD4_RS03540 YPD4_0605 YPD4_RS03540 749994 750416 - tight adherance operon protein gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03540 YPD4_RS03545 YPD4_0606 YPD4_RS03545 750616 751074 + transposase gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03545 YPD4_RS03550 YPD4_RS03550 YPD4_RS03550 751164 751337 + invasin gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03550 YPD4_RS03555 YPD4_0607 YPD4_RS03555 751327 751785 + transposase gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03555 YPD4_RS03560 YPD4_0608 YPD4_RS03560 752138 754618 + outer membrane usher protein gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03560 YPD4_RS03565 YPD4_0609 YPD4_RS03565 754636 755355 + fimbrial chaperone protein gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03565 YPD4_RS03570 YPD4_0610 YPD4_RS03570 755380 756486 + fimbrial protein gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03570 YPD4_RS03575 YPD4_0611 YPD4_RS03575 756698 757777 - iron ABC transporter substrate-binding protein gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03575 YPD4_RS03580 YPD4_0612 YPD4_RS03580 758633 759628 + hypothetical protein gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03580 YPD4_RS03585 YPD4_RS03585 YPD4_RS03585 759720 760289 - lipoprotein gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03585 YPD4_RS03590 YPD4_RS03590 YPD4_RS03590 760519 762616 - flagellar biosynthesis protein FlhA gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03590 YPD4_RS03595 YPD4_0615 YPD4_RS03595 762603 763736 - flagellar biosynthesis protein FlhB gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03595 YPD4_RS03600 YPD4_0616 YPD4_RS03600 763736 764509 - flagellar biosynthesis protein FliR gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03600 YPD4_RS03605 YPD4_RS03605 YPD4_RS03605 764516 764788 - flagellar biosynthesis protein FliQ gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03605 YPD4_RS03610 YPD4_0617 YPD4_RS03610 764790 765560 - flagellar biosynthesis protein FliP gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03610 YPD4_RS03615 YPD4_0618 YPD4_RS03615 765557 765970 - flagellar motor switch protein FliN gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03615 YPD4_RS03620 YPD4_0619 YPD4_RS03620 765963 766862 - flagellar motor switch protein FliM gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03620 YPD4_RS03625 YPD4_0620 YPD4_RS03625 767385 768413 + Fis family transcriptional regulator gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03625 YPD4_RS03630 YPD4_0621 YPD4_RS03630 768430 768810 + flagellar hook-basal body protein FliE gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03630 YPD4_RS03635 YPD4_0622 fliF fliF 768820 770460 + flagellar M-ring protein FliF the MS-ring anchors the flagellum to the cytoplasmic membrane%3B part of the flagellar basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B the Vibrio parahaemolyticus protein is associated with the lateral flagella gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03635 YPD4_RS03640 YPD4_0623 fliG fliG 770432 771475 + flagellar motor switch protein FliG One of three proteins involved in switching the direction of the flagellar rotation gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03640 YPD4_RS03645 YPD4_0624 fliH fliH 771480 772196 + flagellar assembly protein FliH binds to and inhibits the function of flagella specific ATPase FliI gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03645 YPD4_RS03650 YPD4_0625 YPD4_RS03650 772189 773529 + flagellum-specific ATP synthase gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03650 YPD4_RS03655 YPD4_0626 YPD4_RS03655 773533 773970 + flagellar export protein FliJ gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03655 YPD4_RS03660 YPD4_0627 YPD4_RS03660 774298 774723 - flagellar protein FlgN gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03660 YPD4_RS03665 YPD4_RS03665 YPD4_RS03665 774730 774996 - flagellar biosynthesis protein FlgM gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03665 YPD4_RS03670 YPD4_0628 flgA flgA 775225 776073 - flagellar basal body P-ring biosynthesis protein FlgA required for the assembly of the flagellar basal body P-ring%3B the Vibrio parahaemolyticus protein involved with the synthesis of the lateral flagella gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03670 YPD4_RS03675 YPD4_0629 flgB flgB 776131 776577 + flagellar biosynthesis protein FlgB with FlgF and C makes up the proximal portion of the flagellar basal body rod%3B Yersinia has 2 copies of flgB and other flagellar genes gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03675 YPD4_RS03680 YPD4_0630 YPD4_RS03680 776580 777005 + flagellar basal body rod protein FlgC gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03680 YPD4_RS03685 YPD4_0631 flgD flgD 777008 777664 + flagellar basal body rod modification protein FlgD acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of some flagellar genes%3B Vibrio parahaemolyticus protein in this cluster is associated with lateral flagella production gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03685 YPD4_RS03690 YPD4_0632 flgE flgE 777719 778960 + flagellar hook protein FlgE the hook connects flagellar basal body to the flagellar filament%3B Vibrio parahaemolyticus protein is associated with the lateral flagella gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03690 YPD4_RS03695 YPD4_RS03695 YPD4_RS03695 778960 779148 + flagellar basal-body rod protein FlgF gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03695 YPD4_RS03700 YPD4_0633 YPD4_RS03700 779184 779642 - transposase gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03700 YPD4_RS03705 YPD4_RS03705 YPD4_RS03705 779632 779805 - transposase gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03705 YPD4_RS03710 YPD4_0634 YPD4_RS03710 779809 780402 + flagellar basal body rod protein FlgF gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03710 YPD4_RS03715 YPD4_0635 flgG flgG 780470 781255 + flagellar basal body rod protein FlgG makes up the distal portion of the flagellar basal body rod%3B Bradyrhizobium has one thick flagellum and several thin flagella%3B the Bradyrhizobium protein in this cluster is associated with the thick flagella gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03715 YPD4_RS03720 YPD4_0636 flgH flgH 781290 781955 + flagellar L-ring protein FlgH part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B the Yersinia have 2 copies of flgH gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03720 YPD4_RS03725 YPD4_0637 YPD4_RS03725 782002 783144 + flagellar P-ring protein FlgI gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03725 YPD4_RS03730 YPD4_RS03730 flgJ flgJ 783154 783447 + peptidoglycan hydrolase FlgJ%3B flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space%3B like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03730 YPD4_RS03735 YPD4_0638 flgK flgK 783560 784921 + flagellar hook protein FlgK with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03735 YPD4_RS03740 YPD4_0639 flgL flgL 784950 785873 + flagellar hook-associated protein FlgL with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook%3B in Vibrio parahaemolyticus the protein in this cluster is associated with the lateral flagella gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03740 YPD4_RS03745 YPD4_0640 YPD4_RS03745 785885 786898 + flagellar hook associated protein lafW gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03745 YPD4_RS03750 YPD4_0641 YPD4_RS03750 787062 787508 - hypothetical protein gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03750 YPD4_RS03755 YPD4_0642 YPD4_RS03755 787489 788535 - hypothetical protein gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03755 YPD4_RS03760 YPD4_0643 YPD4_RS03760 789161 790375 + flagellin gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03760 YPD4_RS03765 YPD4_0644 YPD4_RS03765 790890 792089 + flagellin gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03765 YPD4_RS03770 YPD4_0645 YPD4_RS03770 792372 793577 + flagellin gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03770 YPD4_RS03775 YPD4_0646 YPD4_RS03775 793797 795074 + flagellar hook-associated protein gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03775 YPD4_RS03780 YPD4_0647 YPD4_RS03780 795084 795464 + flagellar export chaperone FliS gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03780 YPD4_RS03785 YPD4_0648 YPD4_RS03785 795466 795792 + flagellar protein lafD gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03785 YPD4_RS03790 YPD4_0649 YPD4_RS03790 795794 796957 + flagellar hook-length control protein gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03790 YPD4_RS03795 YPD4_0650 YPD4_RS03795 796996 797466 + flagellar protein gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03795 YPD4_RS03800 YPD4_0651 YPD4_RS03800 797472 798167 + DNA-directed RNA polymerase sigma-70 factor sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor directs late flagellar biosynthesis genes gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03800 YPD4_RS03805 YPD4_0652 YPD4_RS03805 798183 799049 + flagellar motor protein MotA With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03805 YPD4_RS03810 YPD4_0653 YPD4_RS03810 799049 799960 + flagellar motor protein B gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03810 YPD4_RS03815 YPD4_RS03815 YPD4_RS03815 800029 800217 + hypothetical protein gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03815 YPD4_RS03820 YPD4_0654 YPD4_RS03820 800420 801016 + hypothetical protein gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03820 YPD4_RS03825 YPD4_0655 YPD4_RS03825 801013 801468 + membrane protein gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03825 YPD4_RS03830 YPD4_RS03830 YPD4_RS03830 801566 801823 + membrane protein gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03830 YPD4_RS03835 YPD4_RS03835 YPD4_RS03835 801976 802445 - hypothetical protein gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03835 YPD4_RS03840 YPD4_RS03840 YPD4_RS03840 802695 802997 - membrane protein gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03840 YPD4_RS03845 YPD4_0656 YPD4_RS03845 803610 804125 + transposase gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03845 YPD4_RS03850 YPD4_RS03850 YPD4_RS03850 804179 804965 + integrase gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03850 YPD4_RS03855 YPD4_0658 YPD4_RS03855 804855 806018 - hypothetical protein gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03855 YPD4_RS03860 YPD4_RS03860 YPD4_RS03860 806312 807332 + LacI family transcriptional regulator gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03860 YPD4_RS03865 YPD4_0660 YPD4_RS03865 807614 808984 + transporter divalent anion:Na+ symporter (DASS) family gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03865 YPD4_RS03870 YPD4_0661 YPD4_RS03870 809164 809577 - hypothetical protein gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03870 YPD4_RS03875 YPD4_RS03875 YPD4_RS03875 810121 810363 - hypothetical protein gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03875 YPD4_RS03880 YPD4_0662 YPD4_RS03880 810638 814954 - type IV secretion protein Rhs gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03880 YPD4_RS03885 YPD4_0663 YPD4_RS03885 814968 816287 - hypothetical protein gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03885 YPD4_RS03890 YPD4_0664 YPD4_RS03890 816313 818538 - type VI secretion protein Vgr gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03890 YPD4_RS03895 YPD4_0666 YPD4_RS03895 819124 822893 - autotransporter gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03895 YPD4_RS03900 YPD4_0667 YPD4_RS03900 823549 825549 - adhesin gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03900 YPD4_RS03905 YPD4_0668 YPD4_RS03905 825654 827312 - hypothetical protein gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03905 YPD4_RS03910 YPD4_0669 YPD4_RS03910 828313 829656 - idonate transporter gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03910 YPD4_RS03915 YPD4_0670 YPD4_RS03915 831196 831594 + hypothetical protein gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03915 YPD4_RS03920 YPD4_0671 YPD4_RS03920 832030 832905 + hypothetical protein gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03920 YPD4_RS03925 YPD4_0672 YPD4_RS03925 833228 834985 - sulfate ABC transporter permease gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03925 YPD4_RS03930 YPD4_0673 YPD4_RS03930 834982 836751 - multidrug ABC transporter permease gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03930 YPD4_RS03935 YPD4_0674 YPD4_RS03935 836751 838055 - MFS transporter gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03935 YPD4_RS03940 YPD4_0675 YPD4_RS03940 838045 838809 - thioesterase gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03940 YPD4_RS03945 YPD4_0676 YPD4_RS03945 838802 839929 - thiazolinyl imide reductase gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03945 YPD4_RS03950 YPD4_0677 YPD4_RS03950 839926 841002 - saccharopine dehydrogenase gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03950 YPD4_RS03955 YPD4_0678 YPD4_RS03955 840999 846791 - non-ribosomal peptide synthetase gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03955 YPD4_RS03960 YPD4_0679 YPD4_RS03960 846804 848492 - high molecular weight siderophore biosynthesis protein gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03960 YPD4_RS03965 YPD4_0680 YPD4_RS03965 848500 854958 - non-ribosomal peptide synthetase gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03965 YPD4_RS03970 YPD4_0681 YPD4_RS03970 855166 855945 - transposase gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03970 YPD4_RS03975 YPD4_0682 YPD4_RS03975 855945 856967 - transposase gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03975 YPD4_RS03980 YPD4_0683 YPD4_RS03980 856981 860394 - peptide synthetase gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03980 YPD4_RS03985 YPD4_0684 YPD4_RS03985 860545 862617 - ligand-gated channel gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03985 YPD4_RS03990 YPD4_0685 YPD4_RS03990 863005 864237 - peptidase T catalyzes the release of the N-terminal amino acid from a tripeptide gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03990 YPD4_RS03995 YPD4_0686 YPD4_RS03995 864315 865871 - aminobenzoyl-glutamate transporter gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS03995 YPD4_RS04000 YPD4_0687 YPD4_RS04000 866590 868407 + hypothetical protein gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04000 YPD4_RS04005 YPD4_0688 YPD4_RS04005 868615 869490 + hypothetical protein gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04005 YPD4_RS04010 YPD4_0689 YPD4_RS04010 870053 871933 + hypothetical protein gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04010 YPD4_RS04015 YPD4_0690 YPD4_RS04015 872036 883153 - autotransporter gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04015 YPD4_RS04020 YPD4_0691 YPD4_RS04020 884007 884594 - hypothetical protein gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04020 YPD4_RS04025 YPD4_0692 YPD4_RS04025 884872 886362 + enterotoxin gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04025 YPD4_RS04030 YPD4_0693 YPD4_RS04030 886497 889616 - multidrug RND transporter gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04030 YPD4_RS04035 YPD4_0694 YPD4_RS04035 889629 890906 - hemolysin secretion protein D gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04035 YPD4_RS04040 YPD4_RS04040 YPD4_RS04040 891345 891542 + membrane protein gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04040 YPD4_RS04045 YPD4_0695 YPD4_RS04045 891546 893912 + diguanylate cyclase gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04045 YPD4_RS04050 YPD4_0696 YPD4_RS04050 894108 894893 - integrase gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04050 YPD4_RS04055 YPD4_0697 YPD4_RS04055 894947 895570 - transposase gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04055 YPD4_RS04060 YPD4_0698 YPD4_RS04060 895734 897158 + sodium:galactoside symporter gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04060 YPD4_RS04065 YPD4_0699 YPD4_RS04065 897417 899597 - ligand-gated channel protein gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04065 YPD4_RS04070 YPD4_0700 YPD4_RS04070 899669 900997 - lysine 6-monooxygenase gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04070 YPD4_RS04075 YPD4_0701 YPD4_RS04075 900994 902742 - aerobactin synthase IucC gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04075 YPD4_RS04080 YPD4_0702 YPD4_RS04080 902739 903689 - N(6)-hydroxylysine O-acetyltransferase gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04080 YPD4_RS04085 YPD4_0703 YPD4_RS04085 903673 904743 - aerobactin siderophore biosynthesis proteiniucA gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04085 YPD4_RS04090 YPD4_0704 YPD4_RS04090 904836 905444 - hypothetical protein gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04090 YPD4_RS04095 YPD4_RS04095 YPD4_RS04095 905584 906808 + MFS transporter gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04095 YPD4_RS04100 YPD4_0706 YPD4_RS04100 907098 907931 - dioxygenase gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04100 YPD4_RS04105 YPD4_0707 YPD4_RS04105 908308 909684 - peptidase gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04105 YPD4_RS04110 YPD4_0708 YPD4_RS04110 910246 910989 + LuxR family transcriptional regulator gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04110 YPD4_RS04115 YPD4_0709 YPD4_RS04115 910970 911620 - acyl-homoserine-lactone synthase gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04115 YPD4_RS04120 YPD4_RS04120 YPD4_RS04120 912795 913445 + CAAX amino protease gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04120 YPD4_RS04125 YPD4_0711 YPD4_RS04125 913896 914291 + lipoprotein gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04125 YPD4_RS04130 YPD4_RS04130 YPD4_RS04130 914359 914622 + transposase gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04130 YPD4_RS04135 YPD4_RS04135 YPD4_RS04135 914796 915167 + hypothetical protein gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04135 YPD4_RS04140 YPD4_RS04140 YPD4_RS04140 915210 915365 + hypothetical protein gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04140 YPD4_RS04145 YPD4_0712 YPD4_RS04145 916567 917067 + hypothetical protein gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04145 YPD4_RS04150 YPD4_0713 YPD4_RS04150 917110 918654 + hypothetical protein gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04150 YPD4_RS04155 YPD4_0714 YPD4_RS04155 918666 920018 + hypothetical protein gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04155 YPD4_RS04160 YPD4_0715 YPD4_RS04160 920015 920701 + hypothetical protein gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04160 YPD4_RS04165 YPD4_RS04165 YPD4_RS04165 920701 922436 + hypothetical protein gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04165 YPD4_RS04170 YPD4_0718 YPD4_RS04170 922440 922931 + hypothetical protein gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04170 YPD4_RS04175 YPD4_0719 YPD4_RS04175 923319 925961 + ATPase gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04175 YPD4_RS04180 YPD4_0720 YPD4_RS04180 925964 928312 + type IV secretion protein Rhs gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04180 YPD4_RS04185 YPD4_0721 YPD4_RS04185 928328 930625 + membrane protein gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04185 YPD4_RS04190 YPD4_0722 YPD4_RS04190 930612 931379 + hypothetical protein gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04190 YPD4_RS04195 YPD4_RS04195 YPD4_RS04195 931628 931750 + transposase gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04195 YPD4_RS04200 YPD4_0723 YPD4_RS04200 931804 932172 + transposase gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04200 YPD4_RS04205 YPD4_0724 YPD4_RS04205 932780 933415 + type IV secretion protein Rhs gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04205 YPD4_RS04210 YPD4_RS04210 YPD4_RS04210 933601 933747 + integrase gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04210 YPD4_RS04215 YPD4_t7 YPD4_RS04215 934000 934075 - tRNA-Phe tRNA gene841 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04215 YPD4_RS04220 YPD4_0725 YPD4_RS04220 934744 936906 + ornithine decarboxylase gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04220 YPD4_RS04225 YPD4_0726 YPD4_RS04225 937462 938421 + sugar ABC transporter substrate-binding protein gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04225 YPD4_RS04230 YPD4_0727 YPD4_RS04230 938467 939966 + lantibiotic ABC transporter permease gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04230 YPD4_RS04235 YPD4_0728 YPD4_RS04235 940047 940982 + sugar ABC transporter permease gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04235 YPD4_RS04240 YPD4_0729 YPD4_RS04240 941065 943098 - TonB-dependent receptor gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04240 YPD4_RS04245 YPD4_0730 YPD4_RS04245 943202 944302 - ABC transporter substrate-binding protein gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04245 YPD4_RS04250 YPD4_0731 mltC mltC 944602 945678 - murein transglycosylase Murein hydrolase C%3B membrane-bound%3B lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04250 YPD4_RS04255 YPD4_RS04255 YPD4_RS04255 945861 946133 - Fe(2+)-trafficking protein protects iron-sulfur proteins against oxidative damage gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04255 YPD4_RS04260 YPD4_0732 YPD4_RS04260 946311 947426 - A/G-specific adenine glycosylase gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04260 YPD4_RS04265 YPD4_0733 trmB trmB 947764 948483 + tRNA (guanine-N(7)-)-methyltransferase tRNA (guanine-N(7)-)-methyltransferase%3B catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04265 YPD4_RS04270 YPD4_0734 YPD4_RS04270 948483 948809 + hypothetical protein gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04270 YPD4_RS04275 YPD4_0735 YPD4_RS04275 948920 949846 + glutaminase catalyzes the formation of glutamate from glutamine gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04275 YPD4_RS04280 YPD4_0736 YPD4_RS04280 949958 950488 + hypothetical protein gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04280 YPD4_RS04285 YPD4_RS04285 YPD4_RS04285 950461 950691 + hypothetical protein gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04285 YPD4_RS04290 YPD4_0737 YPD4_RS04290 951190 960522 + phage minor structural protein gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04290 YPD4_RS04295 YPD4_0738 YPD4_RS04295 960712 961842 - coproporphyrinogen III oxidase gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04295 YPD4_RS04300 YPD4_RS04300 YPD4_RS04300 961835 962429 - nucleoside-triphosphate diphosphatase HAM1-like protein%3B Rec-dependent growth%3B RgdB%3B yggV%3B it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04300 YPD4_RS04305 YPD4_0740 YPD4_RS04305 962529 962819 - hypothetical protein gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04305 YPD4_RS04310 YPD4_0741 YPD4_RS04310 962816 963370 - hypothetical protein gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04310 YPD4_RS04315 YPD4_0742 YPD4_RS04315 963658 964479 - pyrroline-5-carboxylate reductase gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04315 YPD4_RS04320 YPD4_0743 YPD4_RS04320 964612 965310 - YggS family pyridoxal phosphate enzyme gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04320 YPD4_RS04325 YPD4_0744 YPD4_RS04325 965330 966454 + hypothetical protein gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04325 YPD4_RS04330 YPD4_0745 YPD4_RS04330 966563 967678 - agmatine deiminase catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04330 YPD4_RS04335 YPD4_0746 YPD4_RS04335 967682 968566 - N-carbamoylputrescine amidase gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04335 YPD4_RS04340 YPD4_0747 YPD4_RS04340 968746 969168 - Holliday junction DNA helicase similar to RuvC resolvase with substantial differences%3B NMR structural information suggests this protein is monomeric%3B unknown cellular function gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04340 YPD4_RS04345 YPD4_0748 YPD4_RS04345 969168 969731 - hypothetical protein gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04345 YPD4_RS04350 YPD4_0749 YPD4_RS04350 969847 970806 - glutathione synthetase catalyzes the second step in the glutathione biosynthesis pathway%2C where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine %3D ADP + phosphate + glutathione gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04350 YPD4_RS04355 YPD4_0750 YPD4_RS04355 970832 971563 - 16S rRNA methyltransferase gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04355 YPD4_RS04360 YPD4_0751 YPD4_RS04360 971815 972522 - endonuclease gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04360 YPD4_RS04365 YPD4_0752 YPD4_RS04365 972620 973132 - Zn-dependent metalloprotease gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04365 YPD4_RS04370 YPD4_0753 YPD4_RS04370 973325 974479 - S-adenosylmethionine synthase catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04370 YPD4_RS04375 YPD4_0754 YPD4_RS04375 975686 977665 + biosynthetic arginine decarboxylase catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04375 YPD4_RS04380 YPD4_0755 YPD4_RS04380 977825 978145 + (2Fe-2S)-binding protein gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04380 YPD4_RS04385 YPD4_0756 YPD4_RS04385 978435 979187 - lipoprotein gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04385 YPD4_RS04390 YPD4_0757 YPD4_RS04390 979678 981672 + transketolase catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04390 YPD4_RS04395 YPD4_0758 YPD4_RS04395 981980 982438 + transposase gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04395 YPD4_RS04400 YPD4_RS04400 gapA gapA 982779 983794 + glyceraldehyde-3-phosphate dehydrogenase required for glycolysis%3B catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04400 YPD4_RS04405 YPD4_0760 YPD4_RS04405 983897 985060 + phosphoglycerate kinase gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04405 YPD4_RS04410 YPD4_0761 YPD4_RS04410 985180 986259 + fructose-bisphosphate aldolase catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1%2C6%2C bisphosphate gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04410 YPD4_RS04415 YPD4_RS04415 YPD4_RS04415 986291 986581 - gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04415 YPD4_RS04420 YPD4_0762 YPD4_RS04420 986697 987566 + mechanosensitive ion channel protein MscS participates in the regulation of osmotic pressure changes within the cel gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04420 YPD4_RS04425 YPD4_0763 YPD4_RS04425 987829 988446 + arginine exporter protein ArgO Involved in the export of arginine gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04425 YPD4_RS04430 YPD4_0764 YPD4_RS04430 988636 989415 + hypothetical protein gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04430 YPD4_RS04435 YPD4_0765 YPD4_RS04435 989426 990334 - chromosome initiation inhibitor specific inhibitor of chromosomal initiation of replication in vitro%3B binds the three 13-mers in the origin (oriC) to block initiation of replication%3B also controls genes involved in arginine transport gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04435 YPD4_RS04440 YPD4_0766 YPD4_RS04440 990676 991332 + ribose-5-phosphate isomerase A 1 catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04440 YPD4_RS04445 YPD4_0767 YPD4_RS04445 991639 992880 + D-3-phosphoglycerate dehydrogenase catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis%3B can also reduce alpha ketoglutarate to form 2-hydroxyglutarate gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04445 YPD4_RS04450 YPD4_0768 YPD4_RS04450 993145 993741 - 5-formyltetrahydrofolate cyclo-ligase ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms%3B unknown function gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04450 YPD4_RS04455 YPD4_0769 YPD4_RS04455 994105 994434 - cell division protein ZapA gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04455 YPD4_RS04460 YPD4_0770 YPD4_RS04460 994771 995349 + hypothetical protein the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers%3B function unknown gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04460 YPD4_RS04465 YPD4_0771 YPD4_RS04465 995437 996750 + proline aminopeptidase P II exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue%3B substrate can be as short as a dipeptide gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04465 YPD4_RS04470 YPD4_0772 YPD4_RS04470 996819 997997 + 2-octaprenyl-6-methoxyphenyl hydroxylase Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1%2C4-benzoquinone gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04470 YPD4_RS04475 YPD4_0773 YPD4_RS04475 998170 999390 + 2-octaprenyl-6-methoxyphenyl hydroxylase gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04475 YPD4_RS04480 YPD4_0774 gcvT gcvT 1000111 1001208 + aminomethyltransferase catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate%2C causing the release of ammonia and the generation of reduced GcvH protein gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04480 YPD4_RS04485 YPD4_0775 YPD4_RS04485 1001277 1001663 + glycine cleavage system protein H part of multienzyme complex composed of H%2C L%2C P%2C and T proteins which catalyzes oxidation of glycine to yield carbon dioxide%2C ammonia%2C 5%2C10-CH2-H4folate and a reduced pyridine nucleotide%3B protein H is involved in transfer of methylamine group from the P to T protein%3B covalently bound to a lipoyl cofactor gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04485 YPD4_RS04490 YPD4_0776 YPD4_RS04490 1001875 1004754 + glycine dehydrogenase (decarboxylating) acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04490 YPD4_RS04495 YPD4_0777 YPD4_RS04495 1005132 1005569 + hypothetical protein gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04495 YPD4_RS04500 YPD4_RS04500 YPD4_RS04500 1006630 1006782 + hemagglutinin gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04500 YPD4_RS04505 YPD4_0778 YPD4_RS04505 1006779 1008755 + membrane protein gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04505 YPD4_RS04510 YPD4_0779 YPD4_RS04510 1008859 1009962 + hypothetical protein gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04510 YPD4_RS04515 YPD4_0780 YPD4_RS04515 1010164 1010865 + hemolysin III gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04515 YPD4_RS04520 YPD4_0781 YPD4_RS04520 1011123 1011620 + membrane protein gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04520 YPD4_RS04525 YPD4_0782 ygfZ ygfZ 1011693 1012685 - tRNA-modifying protein YgfZ physiological role is not clear%3B not essential for growth but mutants grow poorly%3B mutations suppress hda null mutations%3B may be involved in regulation of ATP-DnaA levels%3B may also be involved in regulation of tRNA modifications%3B can bind folic acid and tetrahydrofolate%3B forms a three domain ring-like structure with a central channel%3B structurally similar to DMGO protein from A. globiformis%3B shows sequence similarity to yeast CAF17 transcriptional regulato%3B Hda supressor gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04525 YPD4_RS04530 YPD4_RS04530 YPD4_RS04530 1013002 1013268 + hypothetical protein gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04530 YPD4_RS04535 YPD4_0783 YPD4_RS04535 1013249 1013674 + membrane protein gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04535 YPD4_RS04540 YPD4_0784 YPD4_RS04540 1013674 1014372 + two-component system response regulator response regulator in two-component regulatory system with CreC%3B CreB protein is phosphorylated by sensor protein phospho-CreC%3B involved in catabolic regulation gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04540 YPD4_RS04545 YPD4_0785 YPD4_RS04545 1014397 1015815 + two-component system sensor histidine kinase part of a two-component regulatory system with CreB or PhoB%3B involved in catabolic regulation gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04545 YPD4_RS04550 YPD4_0786 YPD4_RS04550 1015936 1017393 + membrane protein gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04550 YPD4_RS04555 YPD4_0787 YPD4_RS04555 1017483 1018001 - flavodoxin An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04555 YPD4_RS04560 YPD4_0788 xerD xerD 1018108 1019007 + tyrosine recombinase XerD site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B XerD specifically exchanges the bottom strands%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04560 YPD4_RS04565 YPD4_0789 YPD4_RS04565 1019038 1019754 + thiol:disulfide interchange protein DsbC DsbC%3B periplasmic protein with protein disulfide isomerase activity%3B this protein also shows disulfide oxidoreductase activity gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04565 YPD4_RS04570 YPD4_0790 YPD4_RS04570 1019761 1021494 + ssDNA exonuclease RecJ 5'-3' single-stranded-DNA-specific exonuclease gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04570 YPD4_RS04575 YPD4_0791 YPD4_RS04575 1021839 1022771 + peptide chain release factor 2 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04575 YPD4_RS04580 YPD4_0792 lysS lysS 1022781 1024298 + lysine--tRNA ligase class II%3B LysRS2%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri%2C LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04580 YPD4_RS04585 YPD4_t8 YPD4_RS04585 1024492 1024565 + tRNA-Gly tRNA gene915 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04585 YPD4_RS04590 YPD4_0793 YPD4_RS04590 1024731 1025945 + integrase gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04590 YPD4_RS04595 YPD4_RS04595 YPD4_RS04595 1026027 1026212 - hypothetical protein gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04595 YPD4_RS04600 YPD4_RS04600 YPD4_RS04600 1026313 1026438 - hypothetical protein gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04600 YPD4_RS04605 YPD4_RS04605 YPD4_RS04605 1026810 1027070 + hypothetical protein gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04605 YPD4_RS04610 YPD4_0794 YPD4_RS04610 1027133 1027495 + 2-hydroxyacid dehydrogenase gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04610 YPD4_RS04615 YPD4_RS04615 YPD4_RS04615 1027659 1027955 + hypothetical protein gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04615 YPD4_RS04620 YPD4_0795 YPD4_RS04620 1027955 1028353 + antitoxin gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04620 YPD4_RS04625 YPD4_0796 YPD4_RS04625 1028753 1031044 - DNA primase gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04625 YPD4_RS04630 YPD4_0797 YPD4_RS04630 1031344 1031670 + hypothetical protein gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04630 YPD4_RS04635 YPD4_RS04635 YPD4_RS04635 1031663 1031815 + hypothetical protein gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04635 YPD4_RS04640 YPD4_RS04640 YPD4_RS04640 1031829 1032029 - hypothetical protein gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04640 YPD4_RS04645 YPD4_0798 YPD4_RS04645 1032211 1032543 - hypothetical protein gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04645 YPD4_RS04650 YPD4_RS04650 YPD4_RS04650 1032549 1032785 - hypothetical protein gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04650 YPD4_RS04655 YPD4_0799 YPD4_RS04655 1032798 1033163 - hypothetical protein gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04655 YPD4_RS04660 YPD4_0800 YPD4_RS04660 1033432 1034574 + Fic family protein gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04660 YPD4_RS04665 YPD4_0801 YPD4_RS04665 1035081 1036619 + hypothetical protein gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04665 YPD4_RS04670 YPD4_RS04670 YPD4_RS04670 1036616 1036810 + hypothetical protein gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04670 YPD4_RS04675 YPD4_RS04675 YPD4_RS04675 1037183 1037386 + hypothetical protein gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04675 YPD4_RS04680 YPD4_RS04680 YPD4_RS04680 1037433 1037717 + colicin immunity protein gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04680 YPD4_RS04685 YPD4_0802 YPD4_RS04685 1038127 1040286 + hypothetical protein gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04685 YPD4_RS04690 YPD4_0803 YPD4_RS04690 1040256 1041023 + hypothetical protein gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04690 YPD4_RS04695 YPD4_RS04695 YPD4_RS04695 1041335 1041547 + membrane protein gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04695 YPD4_RS04700 YPD4_0804 YPD4_RS04700 1041628 1042407 + membrane protein gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04700 YPD4_RS04705 YPD4_0805 YPD4_RS04705 1042663 1042929 + hypothetical protein gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04705 YPD4_RS04710 YPD4_0806 YPD4_RS04710 1043012 1043332 - hypothetical protein gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04710 YPD4_RS04715 YPD4_0807 YPD4_RS04715 1043332 1044012 - PadR family transcriptional regulator gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04715 YPD4_RS04720 YPD4_0808 YPD4_RS04720 1044436 1045293 - hypothetical protein gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04720 YPD4_RS04725 YPD4_0809 YPD4_RS04725 1045669 1046187 - hypothetical protein gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04725 YPD4_RS04730 YPD4_0810 YPD4_RS04730 1046965 1047966 - sugar ABC transporter substrate-binding protein gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04730 YPD4_RS04735 YPD4_0811 YPD4_RS04735 1048401 1049405 - sugar ABC transporter permease gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04735 YPD4_RS04740 YPD4_0812 YPD4_RS04740 1049477 1050985 - enolase with RbsBCD acts to import ribose into the cell%3B RbsA contains 2 ATP-binding domain gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04740 YPD4_RS04745 YPD4_0813 YPD4_RS04745 1051534 1052634 - sugar ABC transporter ATP-binding protein gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04745 YPD4_RS04750 YPD4_0814 YPD4_RS04750 1052996 1054231 + cyclodextrin-binding protein gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04750 YPD4_RS04755 YPD4_0815 YPD4_RS04755 1054391 1055698 + arabinogalactan ABC transporter permease gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04755 YPD4_RS04760 YPD4_RS04760 YPD4_RS04760 1055710 1056562 + sugar ABC transporter permease gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04760 YPD4_RS04765 YPD4_0817 YPD4_RS04765 1056567 1057769 + galactosidase gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04765 YPD4_RS04770 YPD4_0818 YPD4_RS04770 1057820 1059880 + beta-galactosidase gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04770 YPD4_RS04775 YPD4_0819 YPD4_RS04775 1059992 1060303 + PTS sugar transporter gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04775 YPD4_RS04780 YPD4_0820 YPD4_RS04780 1060676 1061935 - maltoporin porin involved in the transport of maltose and maltodextrins gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04780 YPD4_RS04785 YPD4_0821 lacI lacI 1062207 1063280 + lac repressor transcriptional repressor of lac operon%3B forms a homotetramer as a dimer of dimers%3B binds specific sites in lac operon resulting in DNA looping between the operators%3B binds allolactose as inducer gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04785 YPD4_RS04790 YPD4_0822 YPD4_RS04790 1063625 1066000 - alpha-glucosidase gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04790 YPD4_RS04795 YPD4_0823 YPD4_RS04795 1066151 1067458 - sugar transporter involved in the transport of aldohexuronates gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04795 YPD4_RS04800 YPD4_0824 YPD4_RS04800 1067852 1068934 + cytochrome C peroxidase gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04800 YPD4_RS04805 YPD4_RS04805 YPD4_RS04805 1068924 1069205 + hypothetical protein gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04805 YPD4_RS04810 YPD4_0825 YPD4_RS04810 1069175 1069753 - thiamine biogenesis protein ThiJ gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04810 YPD4_RS04815 YPD4_0826 gatY gatY 1069777 1070631 - fructose-bisphosphate aldolase catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1%2C6-bisphosphate%3B in enteric bacteria there are two D-tagatose 1%2C6-bisphosphate-specific aldolases: KbaY (also called AgaY)%2C involved in catabolism of N-acetyl-galactosamine and D-galactosamine%2C and GatY which is part of the galactitol catabolism pathway gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04815 YPD4_RS04820 YPD4_0827 YPD4_RS04820 1070740 1072227 - hypothetical protein gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04820 YPD4_RS04825 YPD4_0828 YPD4_RS04825 1072350 1073957 - sulfatase gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04825 YPD4_RS04830 YPD4_0829 YPD4_RS04830 1073978 1075204 - anaerobic sulfatase maturase gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04830 YPD4_RS04835 YPD4_0830 YPD4_RS04835 1075448 1076506 - glycosyl hydrolase family 88 gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04835 YPD4_RS04840 YPD4_0831 YPD4_RS04840 1076522 1077277 - 2-deoxy-D-gluconate 3-dehydrogenase catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04840 YPD4_RS04845 YPD4_0832 YPD4_RS04845 1077473 1078639 - N-acetylglucosamine-6-phosphate deacetylase gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04845 YPD4_RS04850 YPD4_0833 YPD4_RS04850 1078642 1079082 - PTS mannose transporter subunit IIA gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04850 YPD4_RS04855 YPD4_0834 YPD4_RS04855 1079168 1080037 - PTS N-acetylgalactosamine transporter subunit IID catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IID with IIC forms the translocation channel%3B involved in N-acetylgalactosamine transport gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04855 YPD4_RS04860 YPD4_0835 YPD4_RS04860 1080049 1080837 - PTS acetylgalactosamine transporter subunit IIC catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake%3Binvolved in N-acetylgalactosamine transport gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04860 YPD4_RS04865 YPD4_0836 YPD4_RS04865 1080884 1081381 - PTS N-acetylgalactosamine transporter subunit IIB catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake%3B involved in N-acetylgalactosamine transport gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04865 YPD4_RS04870 YPD4_0837 YPD4_RS04870 1081399 1082565 - aldose isomerase gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04870 YPD4_RS04875 YPD4_0838 YPD4_RS04875 1082562 1083860 - tagatose 6-phosphate kinase with KbaY catalyzes the formation of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate from tagatose-1%2C6-bisphosphate%3B subunit Z may act as a chaperone for the Y subunit gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04875 YPD4_RS04880 YPD4_0839 YPD4_RS04880 1083910 1084686 - DeoR family transcriptional regulator transcriptional repressor for the agaZVWA and agaSYBCDI operons gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04880 YPD4_RS04885 YPD4_0840 YPD4_RS04885 1085526 1087079 + sulfatase gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04885 YPD4_RS04890 YPD4_0841 YPD4_RS04890 1087531 1087965 - transposase gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04890 YPD4_RS04895 YPD4_0842 YPD4_RS04895 1088022 1089044 + transposase gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04895 YPD4_RS04900 YPD4_0843 YPD4_RS04900 1089044 1089823 + transposase gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04900 YPD4_RS04905 YPD4_0844 YPD4_RS04905 1090168 1093281 - chondroitin ABC lyase gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04905 YPD4_RS04910 YPD4_0845 YPD4_RS04910 1093351 1095537 - autotransporter gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04910 YPD4_RS04915 YPD4_0846 YPD4_RS04915 1095652 1096602 - hypothetical protein gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04915 YPD4_RS04920 YPD4_RS04920 YPD4_RS04920 1096624 1096818 - hypothetical protein gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04920 YPD4_RS04925 YPD4_RS04925 YPD4_RS04925 1097205 1097393 - hypothetical protein gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04925 YPD4_RS04930 YPD4_0847 YPD4_RS04930 1097889 1098644 + carbonic anhydrase gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04930 YPD4_RS04935 YPD4_0848 YPD4_RS04935 1099387 1099803 + hypothetical protein gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04935 YPD4_RS04940 YPD4_0849 YPD4_RS04940 1099973 1100374 + general secretion pathway protein GspC gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04940 YPD4_RS04945 YPD4_0850 YPD4_RS04945 1100455 1102377 + type II secretion system protein GspD gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04945 YPD4_RS04950 YPD4_0851 YPD4_RS04950 1102374 1103885 + type II secretion system protein GspE gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04950 YPD4_RS04955 YPD4_RS04955 YPD4_RS04955 1103872 1104066 + general secretion pathway protein GspF gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04955 YPD4_RS04960 YPD4_0852 YPD4_RS04960 1104027 1105073 + type II secretion system protein F gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04960 YPD4_RS04965 YPD4_0853 YPD4_RS04965 1105093 1105530 + type II secretion system protein GspG gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04965 YPD4_RS04970 YPD4_RS04970 YPD4_RS04970 1105535 1106078 + general secretion pathway protein GspH gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04970 YPD4_RS04975 YPD4_RS04975 YPD4_RS04975 1106170 1106460 + general secretion pathway protein GspI gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04975 YPD4_RS04980 YPD4_RS04980 YPD4_RS04980 1106453 1107049 + type II secretion system protein GspJ gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04980 YPD4_RS04985 YPD4_0855 YPD4_RS04985 1107118 1108014 + general secretion pathway protein GspK gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04985 YPD4_RS04990 YPD4_0856 YPD4_RS04990 1107998 1109188 + type II secretion system protein GspL gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04990 YPD4_RS04995 YPD4_0857 YPD4_RS04995 1109197 1109646 + membrane protein gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS04995 YPD4_RS05000 YPD4_0858 YPD4_RS05000 1109675 1110514 + prepilin peptidase gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05000 YPD4_RS05005 YPD4_0859 YPD4_RS05005 1110566 1110871 - lipoprotein gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05005 YPD4_RS05010 YPD4_0860 YPD4_RS05010 1111155 1111871 + regulatory membrane protein gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05010 YPD4_RS05015 YPD4_RS05015 YPD4_RS05015 1111868 1112269 + hypothetical protein gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05015 YPD4_RS05020 YPD4_0861 YPD4_RS05020 1112424 1114115 + chemotaxis protein gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05020 YPD4_RS05025 YPD4_0862 YPD4_RS05025 1114101 1114736 - protein-disulfide isomerase gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05025 YPD4_RS05030 YPD4_0863 YPD4_RS05030 1114849 1115736 - MBL fold metallo-hydrolase gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05030 YPD4_RS05035 YPD4_0864 YPD4_RS05035 1115843 1116751 + LysR family transcriptional regulator gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05035 YPD4_RS05040 YPD4_0865 YPD4_RS05040 1117120 1118280 + MFS transporter gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05040 YPD4_RS05045 YPD4_0866 YPD4_RS05045 1118277 1119218 - transcriptional regulator activates the transcription of the lysA gene encoding diaminopimelate decarboxylase gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05045 YPD4_RS05050 YPD4_0867 YPD4_RS05050 1119433 1120695 + diaminopimelate decarboxylase catalyzes the decarboxylation of diaminopimelate into lysine%3B pyridoxal phosphate(PLP)-binding gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05050 YPD4_RS05055 YPD4_0868 YPD4_RS05055 1120692 1121714 - transcriptional regulator controls transcription of galETKM gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05055 YPD4_RS05060 YPD4_0869 YPD4_RS05060 1122024 1124285 + biotin transporter BioY gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05060 YPD4_RS05065 YPD4_0870 YPD4_RS05065 1124734 1126890 + bifunctional protein Aas Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1 gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05065 YPD4_RS05070 YPD4_0871 YPD4_RS05070 1126887 1128107 + lysophospholipid transporter LplT gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05070 YPD4_RS05075 YPD4_RS05075 YPD4_RS05075 1128136 1128369 - hypothetical protein gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05075 YPD4_RS05080 YPD4_RS05080 YPD4_RS05080 1128448 1128699 + hypothetical protein gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05080 YPD4_RS05085 YPD4_0872 tas tas 1129076 1130116 - aldo-keto reductase complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain%3B member of the aldo/keto reductase 2 family%3B crystal structure of purified Escherichia coli protein shows bound NADPH gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05085 YPD4_RS05090 YPD4_RS05090 YPD4_RS05090 1130505 1131192 - DNA mismatch repair protein MutH gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05090 YPD4_RS05095 YPD4_RS05095 YPD4_RS05095 1131425 1131616 + hypothetical protein gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05095 YPD4_RS05100 YPD4_RS05100 YPD4_RS05100 1131613 1131864 + hypothetical protein gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05100 YPD4_RS05105 YPD4_0874 YPD4_RS05105 1131890 1132417 + RNA pyrophosphohydrolase hydrolyzes diadenosine polyphosphate gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05105 YPD4_RS05110 YPD4_0875 YPD4_RS05110 1132430 1134676 + phosphoenolpyruvate-protein phosphotransferase member of a second PTS chain involved in nitrogen metabolism%3B PtsP phosphorylates NPr gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05110 YPD4_RS05115 YPD4_0876 YPD4_RS05115 1134927 1135799 + prolipoprotein diacylglyceryl transferase gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05115 YPD4_RS05120 YPD4_0877 YPD4_RS05120 1135806 1136600 + thymidylate synthase gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05120 YPD4_RS05125 YPD4_RS05125 YPD4_RS05125 1136631 1136849 + membrane protein gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05125 YPD4_RS05130 YPD4_RS05130 YPD4_RS05130 1136836 1137237 + prepilin cleavage protein gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05130 YPD4_RS05135 YPD4_0878 YPD4_RS05135 1137319 1138341 + transposase gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05135 YPD4_RS05140 YPD4_0879 YPD4_RS05140 1138341 1139120 + transposase gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05140 YPD4_RS05145 YPD4_0880 YPD4_RS05145 1139355 1139963 + cleavage protein gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05145 YPD4_RS05150 YPD4_0881 YPD4_RS05150 1139960 1140430 + membrane protein gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05150 YPD4_RS05155 YPD4_0882 YPD4_RS05155 1140463 1140828 + peptidase gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05155 YPD4_RS05160 YPD4_0883 recC recC 1140963 1144334 + exonuclease V subunit gamma catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides%3B component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05160 YPD4_RS05165 YPD4_0884 YPD4_RS05165 1144416 1147304 + protease III degrades small peptides gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05165 YPD4_RS05170 YPD4_RS05170 recB recB 1147301 1150964 + exonuclease V subunit beta helicase/nuclease%3B with RecCD catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05170 YPD4_RS05175 YPD4_0887 recD recD 1150961 1152919 + exonuclease V subunit alpha helicase/nuclease%3B with RecBC catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05175 YPD4_RS05180 YPD4_0888 YPD4_RS05180 1153074 1154399 - amino-acid acetyltransferase catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05180 YPD4_RS05185 YPD4_0889 amiC amiC 1154635 1155885 + N-acetylmuramoyl-L-alanine amidase hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05185 YPD4_RS05190 YPD4_t9 YPD4_RS05190 1156115 1156191 - tRNA-Met tRNA gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05190 YPD4_RS05195 YPD4_t10 YPD4_RS05195 1156315 1156391 - tRNA-Met tRNA gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05195 YPD4_RS05200 YPD4_0890 mltA mltA 1156607 1157779 + murein transglycosylase membrane-bound%2C lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05200 YPD4_RS05205 YPD4_0891 YPD4_RS05205 1157922 1158749 + sulfur acceptor protein CsdL accepts sulfur from CsdA gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05205 YPD4_RS05210 YPD4_0892 YPD4_RS05210 1158785 1159228 - Fe-S metabolism protein SufE gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05210 YPD4_RS05215 YPD4_0893 YPD4_RS05215 1159363 1160568 - cysteine sulfinate desulfinase gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05215 YPD4_RS05220 YPD4_0894 YPD4_RS05220 1161228 1162145 + transcriptional regulator Glycine cleavage system transcriptional activator%3B activates the gcvTHP operon in the presence of glycine and represses the operon in its absence gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05220 YPD4_RS05225 YPD4_0895 YPD4_RS05225 1162326 1162706 + membrane protein gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05225 YPD4_RS05230 YPD4_0896 YPD4_RS05230 1162699 1163805 + ribosomal RNA large subunit methyltransferase M gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05230 YPD4_RS05235 YPD4_0897 YPD4_RS05235 1164056 1164811 - flap endonuclease Xni similar to flap endonuclease%3B FEN family%3B protein from E. coli does not have exonuclease activity gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05235 YPD4_RS05240 YPD4_0898 YPD4_RS05240 1165071 1166435 - LOG family protein gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05240 YPD4_RS05245 YPD4_0899 queF queF 1166588 1167433 - NADPH-dependent 7-cyano-7-deazaguanine reductase catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05245 YPD4_RS05250 YPD4_0900 YPD4_RS05250 1167565 1168116 + protein Syd gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05250 YPD4_RS05255 YPD4_0901 YPD4_RS05255 1168806 1169264 + transposase gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05255 YPD4_RS05260 YPD4_0902 YPD4_RS05260 1169518 1169850 + hypothetical protein gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05260 YPD4_RS05265 YPD4_0903 YPD4_RS05265 1169850 1170623 + tRNA pseudouridine synthase C catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05265 YPD4_RS05270 YPD4_0904 YPD4_RS05270 1170651 1171100 + flavodoxin An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05270 YPD4_RS05275 YPD4_0905 YPD4_RS05275 1171190 1171579 - hypothetical protein gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05275 YPD4_RS05280 YPD4_0906 dapD dapD 1171703 1172527 - 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05280 YPD4_RS05285 YPD4_0907 YPD4_RS05285 1172702 1175383 - uridylyltransferase catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05285 YPD4_RS05290 YPD4_0908 YPD4_RS05290 1175443 1176234 - methionine aminopeptidase catalyzes the removal of N-terminal amino acids from peptides and arylamides%3B generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn%2C Fe%2C or Mn gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05290 YPD4_RS05295 YPD4_0909 YPD4_RS05295 1176669 1177394 + 30S ribosomal protein S2 gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05295 YPD4_RS05300 YPD4_RS05300 tsf tsf 1177522 1178378 + elongation factor Ts EF-Ts%3B functions during elongation stage of protein translation%3B forms a dimer%3B associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05300 YPD4_RS05305 YPD4_0912 YPD4_RS05305 1178587 1179312 + uridylate kinase gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05305 YPD4_RS05310 YPD4_0913 frr frr 1179448 1180005 + ribosome-recycling factor Rrf%3B Frr%3B ribosome-recycling factor%3B release factor 4%3B RF4%3B recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G%3B A GTPase-dependent process results in release of 50S from 70S%3B inhibited by release factor RF-1%3B essential for viability%3B structurally similar to tRNAs gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05310 YPD4_RS05315 YPD4_0914 YPD4_RS05315 1180219 1181415 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase catalyzes the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05315 YPD4_RS05320 YPD4_0915 YPD4_RS05320 1181639 1182397 + ditrans%2Cpolycis-undecaprenyl-diphosphate synthase ((2E%2C6E)-farnesyl-diphosphate specific) catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05320 YPD4_RS05325 YPD4_0916 cdsA cdsA 1182407 1183255 + CDP-diglyceride synthase catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05325 YPD4_RS05330 YPD4_0917 YPD4_RS05330 1183284 1184639 + protease RseP catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05330 YPD4_RS05335 YPD4_RS05335 YPD4_RS05335 1184676 1187064 + outer membrane assembly protein part of a complex with YfgL%2C YfiO%2C and NlpB involved in outer membrane protein biosynthesis%3B involved in the assembly of outer membrane proteins gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05335 YPD4_RS05340 YPD4_0920 YPD4_RS05340 1187222 1187719 + chaperone protein Skp gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05340 YPD4_RS05345 YPD4_0921 lpxD lpxD 1187723 1188745 + UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05345 YPD4_RS05350 YPD4_0922 YPD4_RS05350 1188903 1189433 + 3-hydroxyacyl-ACP dehydratase gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05350 YPD4_RS05355 YPD4_0923 YPD4_RS05355 1189437 1190225 + acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05355 YPD4_RS05360 YPD4_0924 lpxB lpxB 1190229 1191413 + lipid-A-disaccharide synthase catalyzes the formation of lipid A disaccharide from UDP-2%2C3-diacylglucosamine and 2%2C3-diacylglucosamine-1-phosphate%2C lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05360 YPD4_RS05365 YPD4_0925 rnhB rnhB 1191410 1192006 + ribonuclease HII RNH2%3B RNase HII%3B binds manganese%3B endonuclease which specifically degrades the RNA of RNA-DNA hybrids gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05365 YPD4_RS05370 YPD4_0926 dnaE dnaE 1192169 1195651 + DNA polymerase III subunit alpha catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time%3B main replicative polymerase gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05370 YPD4_RS05375 YPD4_0927 YPD4_RS05375 1195664 1196623 + acetyl-CoA carboxylase carboxyltransferase subunit alpha catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits%3B one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05375 YPD4_RS05380 YPD4_0928 YPD4_RS05380 1196807 1197205 + lyase gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05380 YPD4_RS05385 YPD4_0929 tilS tilS 1197207 1198589 + tRNA(Ile)-lysidine synthase Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU%3B ATP-dependent%3B responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05385 YPD4_RS05390 YPD4_0930 YPD4_RS05390 1198826 1199143 + cytochrome C554 gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05390 YPD4_RS05395 YPD4_RS05395 YPD4_RS05395 1199408 1199668 - Rho-binding antiterminator Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05395 YPD4_RS05400 YPD4_RS05400 YPD4_RS05400 1199655 1199855 - hypothetical protein gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05400 YPD4_RS05405 YPD4_0931 YPD4_RS05405 1200096 1200644 + hypothetical protein gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05405 YPD4_RS05410 YPD4_0932 YPD4_RS05410 1200647 1201063 + hypothetical protein gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05410 YPD4_RS05415 YPD4_0933 YPD4_RS05415 1201148 1201831 + lipoprotein involved with copper homeostasis and adhesion gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05415 YPD4_RS05420 YPD4_0934 YPD4_RS05420 1201965 1203683 - proline--tRNA ligase catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05420 YPD4_RS05425 YPD4_0935 YPD4_RS05425 1203787 1204494 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05425 YPD4_RS05430 YPD4_RS05430 rcsF rcsF 1204491 1204897 - colanic acid biosynthesis protein RcsF gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05430 YPD4_RS05435 YPD4_0936 metQ metQ 1205015 1205830 - D-methionine-binding lipoprotein MetQ gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05435 YPD4_RS05440 YPD4_0937 YPD4_RS05440 1205894 1206547 - methionine ABC transporter part of the MetNIQ methionine uptake system gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05440 YPD4_RS05445 YPD4_RS05445 metN metN 1206540 1207572 - DL-methionine transporter ATP-binding subunit part of the metNIQ transport system for methionine gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05445 YPD4_RS05450 YPD4_0939 YPD4_RS05450 1207759 1208325 + D-glycero-beta-D-manno-heptose-1%2C7-bisphosphate 7-phosphatase Converts the D-glycero-beta-D-manno-heptose 1%2C7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05450 YPD4_RS05460 YPD4_r4 YPD4_RS05460 1208764 1210312 + 16S ribosomal RNA rRNA gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05460 YPD4_RS05465 YPD4_t11 YPD4_RS05465 1210446 1210521 + tRNA-Glu tRNA gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05465 YPD4_RS05470 YPD4_r5 YPD4_RS05470 1210765 1213698 + 23S ribosomal RNA rRNA gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05470 YPD4_RS05475 YPD4_RS05475 YPD4_RS05475 1213790 1213905 + 5S ribosomal RNA rRNA gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05475 YPD4_RS05480 YPD4_t12 YPD4_RS05480 1214031 1214107 + tRNA-Asp tRNA gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05480 YPD4_RS05485 YPD4_0940 dkgB dkgB 1214466 1215269 + 2%2C5-diketo-D-gluconic acid reductase B catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05485 YPD4_RS05490 YPD4_0941 YPD4_RS05490 1215322 1215768 + hypothetical protein gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05490 YPD4_RS05495 YPD4_0942 YPD4_RS05495 1216150 1216911 + hypothetical protein gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05495 YPD4_RS05500 YPD4_0943 mltD mltD 1216953 1218341 - murein transglycosylase catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues%3B may play a role in recycling muropeptides during cell division and/or cell elongation%3B in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05500 YPD4_RS05505 YPD4_0944 YPD4_RS05505 1218413 1219168 - hydroxyacylglutathione hydrolase gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05505 YPD4_RS05510 YPD4_0945 YPD4_RS05510 1219213 1219932 + hypothetical protein gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05510 YPD4_RS05515 YPD4_0946 YPD4_RS05515 1219987 1220451 - ribonuclease HI gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05515 YPD4_RS05520 YPD4_0947 YPD4_RS05520 1220521 1221285 + DNA polymerase III subunit epsilon 3'-5' exonuclease of DNA polymerase III gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05520 YPD4_RS05525 YPD4_t13 YPD4_RS05525 1221398 1221474 + tRNA-Asp tRNA gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05525 YPD4_RS05530 YPD4_0948 YPD4_RS05530 1221531 1223015 - permease gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05530 YPD4_RS05535 YPD4_RS05535 YPD4_RS05535 1223239 1223361 + hypothetical protein gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05535 YPD4_RS05540 YPD4_RS05540 YPD4_RS05540 1223354 1223587 + polysaccharide deacetylase gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05540 YPD4_RS05545 YPD4_0949 YPD4_RS05545 1223638 1224417 - transposase gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05545 YPD4_RS05550 YPD4_0950 YPD4_RS05550 1224417 1225439 - transposase gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05550 YPD4_RS05555 YPD4_RS05555 YPD4_RS05555 1225453 1225629 - integrase gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05555 YPD4_RS05560 YPD4_RS05560 YPD4_RS05560 1226044 1226361 + addiction module protein gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05560 YPD4_RS05565 YPD4_RS05565 YPD4_RS05565 1226367 1226681 + DNA-binding protein gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05565 YPD4_RS05570 YPD4_0951 YPD4_RS05570 1227030 1228118 - transcriptional regulator gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05570 YPD4_RS05575 YPD4_RS05575 YPD4_RS05575 1228115 1229074 - DNA primase gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05575 YPD4_RS05580 YPD4_RS05580 YPD4_RS05580 1229067 1229609 - hypothetical protein gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05580 YPD4_RS05585 YPD4_RS05585 YPD4_RS05585 1229609 1229809 - dipicolinate synthase gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05585 YPD4_RS05590 YPD4_0953 YPD4_RS05590 1229802 1230689 - DNA-binding protein gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05590 YPD4_RS05595 YPD4_RS05595 YPD4_RS05595 1230711 1231034 - hypothetical protein gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05595 YPD4_RS05600 YPD4_RS05600 YPD4_RS05600 1231093 1231266 - hypothetical protein gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05600 YPD4_RS05605 YPD4_RS05605 YPD4_RS05605 1231497 1231724 + hypothetical protein gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05605 YPD4_RS05610 YPD4_0954 YPD4_RS05610 1231886 1233556 - hypothetical protein gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05610 YPD4_RS05615 YPD4_0955 YPD4_RS05615 1233607 1234695 - hypothetical protein gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05615 YPD4_RS05620 YPD4_0956 YPD4_RS05620 1234774 1235973 - integrase gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05620 YPD4_RS05625 YPD4_0957 YPD4_RS05625 1236197 1236655 - transposase gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05625 YPD4_RS05630 YPD4_RS05630 YPD4_RS05630 1236645 1236845 - transposase gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05630 YPD4_RS05635 YPD4_0958 smpB smpB 1237290 1237772 - SsrA-binding protein binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes%3B also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site%3B SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus%3B both the tmRNA and SmpB are regulated in cell cycle-dependent manner%3B functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05635 YPD4_RS05640 YPD4_0959 YPD4_RS05640 1237933 1238367 + hypothetical protein gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05640 YPD4_RS05645 YPD4_RS05645 YPD4_RS05645 1238360 1238644 + protein RnfH gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05645 YPD4_RS05650 YPD4_0960 YPD4_RS05650 1238794 1239135 - outer membrane biogenesis protein BamE gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05650 YPD4_RS05655 YPD4_0961 YPD4_RS05655 1239249 1240910 - DNA repair protein RecN gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05655 YPD4_RS05660 YPD4_0962 ppnK ppnK 1240997 1241878 - NAD kinase catalyzes the phosphorylation of NAD to NADP gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05660 YPD4_RS05665 YPD4_0963 YPD4_RS05665 1242002 1242580 + protein GrpE with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins%3B may act as a thermosensor gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05665 YPD4_RS05670 YPD4_0964 gltA gltA 1242688 1243968 - type II citrate synthase type II enzyme%3B in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate%3B allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation%3B forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A%3B functions in TCA cycle%2C glyoxylate cycle and respiration%3B enzyme from Helicobacter pylori is not inhibited by NADH gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05670 YPD4_RS05675 YPD4_RS05675 YPD4_RS05675 1244678 1245067 + succinate dehydrogenase cytochrome b556 large membrane subunit gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05675 YPD4_RS05680 YPD4_0965 sdhD sdhD 1245061 1245408 + succinate dehydrogenase cytochrome b556 small membrane subunit gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05680 YPD4_RS05685 YPD4_0966 sdhA sdhA 1245409 1247175 + succinate dehydrogenase flavoprotein subunit part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05685 YPD4_RS05690 YPD4_0967 sdhB sdhB 1247225 1247941 + succinate dehydrogenase iron-sulfur subunit part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol%3B the catalytic subunits are similar to fumarate reductase gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05690 YPD4_RS05695 YPD4_0968 YPD4_RS05695 1248297 1251104 + 2-oxoglutarate dehydrogenase E1 gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05695 YPD4_RS05700 YPD4_0969 YPD4_RS05700 1251134 1252357 + dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex%3B catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05700 YPD4_RS05705 YPD4_0970 sucC sucC 1252470 1253636 + succinyl-CoA ligase subunit beta catalyzes the interconversion of succinyl-CoA and succinate gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05705 YPD4_RS05710 YPD4_0971 YPD4_RS05710 1253636 1254508 + succinyl-CoA synthetase subunit alpha Catalyzes the only substrate-level phosphorylation in the TCA cycle gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05710 YPD4_RS05715 YPD4_0972 YPD4_RS05715 1255275 1256843 + cytochrome D ubiquinol oxidase subunit I part of the aerobic respiratory chain%3B catalyzes the ubiquinol to ubiquinone gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05715 YPD4_RS05720 YPD4_0973 YPD4_RS05720 1256858 1257997 + cytochrome D ubiquinol oxidase subunit II gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05720 YPD4_RS05725 YPD4_RS05725 YPD4_RS05725 1258010 1258144 + cyd operon protein YbgT gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05725 YPD4_RS05730 YPD4_RS05730 YPD4_RS05730 1258134 1258421 + hypothetical protein gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05730 YPD4_RS05735 YPD4_RS05735 YPD4_RS05735 1258553 1258954 + acyl-CoA thioester hydrolase catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters%3B physiological role remains unknown%3B involved in phospholipid metabolism%3B part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05735 YPD4_RS05740 YPD4_0974 YPD4_RS05740 1258954 1259640 + colicin transporter membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05740 YPD4_RS05745 YPD4_0975 YPD4_RS05745 1259653 1260081 + colicin transporter membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05745 YPD4_RS05750 YPD4_0976 YPD4_RS05750 1260193 1261359 + cell envelope integrity/translocation protein TolA gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05750 YPD4_RS05755 YPD4_0977 tolB tolB 1261479 1262771 + protein TolB forms dimers%3B may be involved in cell envelope integrity%3B interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05755 YPD4_RS05760 YPD4_0978 YPD4_RS05760 1262822 1263328 + hypothetical protein gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05760 YPD4_RS05765 YPD4_0979 YPD4_RS05765 1263338 1264147 + tol-pal system protein YbgF periplasmic protein that interacts with TolA%3B the tol-pal system is probably involved in maintaining cell envelope integrity gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05765 YPD4_RS05770 YPD4_t14 YPD4_RS05770 1264338 1264413 + tRNA-Lys tRNA gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05770 YPD4_RS05775 YPD4_t15 YPD4_RS05775 1264441 1264516 + tRNA-Lys tRNA gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05775 YPD4_RS05780 YPD4_RS05780 YPD4_RS05780 1264664 1264906 - hypothetical protein gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05780 YPD4_RS05785 YPD4_0980 YPD4_RS05785 1264983 1266044 + quinolinate synthase A 3 different subfamilies%3B catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05785 YPD4_RS05790 YPD4_0981 YPD4_RS05790 1266166 1266891 + nicotinamide riboside transporter PnuC involved in nicotinamide riboside transport gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05790 YPD4_RS05795 YPD4_RS05795 YPD4_RS05795 1267006 1267946 - zinc transporter ZitB involved in zinc efflux across the cytoplasmic membrane gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05795 YPD4_RS05800 YPD4_0983 YPD4_RS05800 1268395 1269412 + phospho-2-dehydro-3-deoxyheptonate aldolase catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C phenylalanine sensitive gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05800 YPD4_RS05805 YPD4_0984 YPD4_RS05805 1269422 1270201 - transposase gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05805 YPD4_RS05810 YPD4_RS05810 YPD4_RS05810 1270201 1271222 - transposase gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05810 YPD4_RS05815 YPD4_RS05815 YPD4_RS05815 1271281 1271406 + 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05815 YPD4_RS05820 YPD4_0986 gpmA gpmA 1271588 1272340 - 2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase 2%2C3-bisphosphoglycerate-dependent%3B catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05820 YPD4_RS05825 YPD4_0987 YPD4_RS05825 1272687 1273022 - phosphate-starvation-inducible protein PsiF gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05825 YPD4_RS05830 YPD4_0988 galM galM 1273315 1274211 - galactose-1-epimerase mutarotase%3B catalyzes the conversion of beta-galactose to the alpha-anomer%3B links the metabolism of lactose and galactose gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05830 YPD4_RS05835 YPD4_RS05835 YPD4_RS05835 1274232 1274384 - aldose 1-epimerase gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05835 YPD4_RS05840 YPD4_0989 YPD4_RS05840 1274378 1275529 - galactokinase catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05840 YPD4_RS05845 YPD4_0990 YPD4_RS05845 1275526 1276578 - galactose-1-phosphate uridylyltransferase catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05845 YPD4_RS05850 YPD4_0991 YPD4_RS05850 1276588 1277604 - UDP-glucose 4-epimerase gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05850 YPD4_RS05855 YPD4_0992 YPD4_RS05855 1277964 1278782 - CAAX amino protease gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05855 YPD4_RS05860 YPD4_RS05860 YPD4_RS05860 1278837 1278965 - hypothetical protein gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05860 YPD4_RS05865 YPD4_0993 YPD4_RS05865 1278999 1280489 - molybdenum ABC transporter ATP-binding protein contains 2 ATP-binding cassettes%3B involved in the transport of molybdenum gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05865 YPD4_RS05870 YPD4_0994 YPD4_RS05870 1280599 1281390 - transcriptional regulator ModE represses the modABCD operon and activates the moaABCD and napFDAGHBC operons gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05870 YPD4_RS05875 YPD4_RS05875 YPD4_RS05875 1281690 1281842 + membrane protein gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05875 YPD4_RS05880 YPD4_0995 modA modA 1282077 1282856 + molybdenum ABC transporter substrate-binding protein with ModCB is involved in the high-affinity transport of molybdate gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05880 YPD4_RS05885 YPD4_0996 modB modB 1282856 1283551 + molybdate ABC transporter permease part of ModCBA molybdate transporter%3B member of ABC superfamily%3B inner membrane component%3B regulated by repressor protein ModE gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05885 YPD4_RS05890 YPD4_0997 modC modC 1283545 1284624 + molybdenum import ATP-binding protein ModC Part of the ABC transporter complex modABC involved in molybdenum import gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05890 YPD4_RS05895 YPD4_0998 YPD4_RS05895 1284680 1285501 - pyridoxal phosphate phosphatase gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05895 YPD4_RS05900 YPD4_0999 YPD4_RS05900 1285792 1286796 + 6-phosphogluconolactonase catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05900 YPD4_RS05905 YPD4_RS05905 YPD4_RS05905 1286981 1288262 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05905 YPD4_RS05910 YPD4_1002 YPD4_RS05910 1288361 1289398 + biotin synthase catalyzes the formation of biotin from dethiobiotin gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05910 YPD4_RS05915 YPD4_1003 YPD4_RS05915 1289398 1290549 + 8-amino-7-oxononanoate synthase catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05915 YPD4_RS05920 YPD4_1004 YPD4_RS05920 1290533 1291336 + malonyl-[acyl-carrier protein] O-methyltransferase BioC methyltransferase%3B acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA%2C a biotin precursor%3B member of the bio operon (bioABFCD)%3B in Escherichia coli%2C bioC-null mutants require biotin for growth gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05920 YPD4_RS05925 YPD4_1005 YPD4_RS05925 1291329 1292051 + dithiobiotin synthetase gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05925 YPD4_RS05930 YPD4_1006 YPD4_RS05930 1292203 1292913 - amino acid transporter gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05930 YPD4_RS05935 YPD4_1007 YPD4_RS05935 1294003 1296018 + UvrABC system protein B The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands%2C where it probes for the presence of a lesion gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05935 YPD4_RS05940 YPD4_RS05940 YPD4_RS05940 1296310 1296555 + transporter gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05940 YPD4_RS05945 YPD4_1008 YPD4_RS05945 1296686 1297609 - hypothetical protein gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05945 YPD4_RS05950 YPD4_RS05950 YPD4_RS05950 1297743 1297889 - hypothetical protein gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05950 YPD4_RS05955 YPD4_1009 moaA moaA 1298141 1299121 + cyclic pyranopterin monophosphate synthase together with moaC%2C is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05955 YPD4_RS05960 YPD4_1010 moaC moaC 1299222 1299701 + cyclic pyranopterin monophosphate synthase accessory protein MoaC%3B along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z%3B involved in molybdenum cofactor biosynthesis gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05960 YPD4_RS05965 YPD4_RS05965 moaD moaD 1299698 1299943 + molybdopterin synthase small subunit catalyzes the conversion of molybdopterin precursor Z into molybdopterin gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05965 YPD4_RS05970 YPD4_1011 YPD4_RS05970 1299946 1300398 + molybdopterin guanine dinucleotide biosynthesis protein MoaE gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05970 YPD4_RS05975 YPD4_1012 YPD4_RS05975 1300541 1301251 + membrane protein gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05975 YPD4_RS05980 YPD4_RS05980 YPD4_RS05980 1301325 1301495 + transposase gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05980 YPD4_RS05985 YPD4_1013 YPD4_RS05985 1301485 1301943 + transposase gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05985 YPD4_RS05990 YPD4_1014 YPD4_RS05990 1302172 1303875 - oxygen-dependent choline dehydrogenase catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05990 YPD4_RS05995 YPD4_1015 YPD4_RS05995 1303898 1305370 - NAD/NADP-dependent betaine aldehyde dehydrogenase gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS05995 YPD4_RS06000 YPD4_1016 YPD4_RS06000 1305428 1306024 - transcriptional regulator gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06000 YPD4_RS06005 YPD4_1017 YPD4_RS06005 1306389 1308437 + choline transporter BetT proton-motive-force-driven choline transporter gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06005 YPD4_RS06010 YPD4_1018 YPD4_RS06010 1308669 1309562 + XRE family transcriptional regulator gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06010 YPD4_RS06015 YPD4_1019 YPD4_RS06015 1309600 1310448 - multidrug DMT transporter gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06015 YPD4_RS06020 YPD4_1020 YPD4_RS06020 1310794 1311657 + purine nucleoside phosphorylase gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06020 YPD4_RS06025 YPD4_1021 YPD4_RS06025 1311796 1312440 + nucleoside permease gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06025 YPD4_RS06030 YPD4_1022 YPD4_RS06030 1312586 1313044 + transposase gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06030 YPD4_RS06035 YPD4_1023 YPD4_RS06035 1313145 1313762 + nucleoside permease gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06035 YPD4_RS06040 YPD4_1024 YPD4_RS06040 1313850 1314323 - zinc resistance protein gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06040 YPD4_RS06045 YPD4_1025 YPD4_RS06045 1314681 1316495 + sensor protein ZraS gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06045 YPD4_RS06050 YPD4_1026 YPD4_RS06050 1316482 1317846 + acetoacetate metabolism regulatory protein AtoC DNA-binding response regulator in two-component regulatory system with ZraS%3B response regulator/sigma54 interaction protein gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06050 YPD4_RS06055 YPD4_1027 YPD4_RS06055 1318194 1319303 + NADH:flavin oxidoreductase gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06055 YPD4_RS06060 YPD4_1028 YPD4_RS06060 1319304 1320215 - LysR family transcriptional regulator gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06060 YPD4_RS06065 YPD4_RS06065 YPD4_RS06065 1320770 1320997 + N5%2CN10-methylene tetrahydromethanopterin reductase gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06065 YPD4_RS06070 YPD4_1029 YPD4_RS06070 1321008 1321334 + hypothetical protein gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06070 YPD4_RS06075 YPD4_1030 YPD4_RS06075 1321373 1322479 - membrane protein gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06075 YPD4_RS06080 YPD4_1031 YPD4_RS06080 1322492 1323667 - membrane protein gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06080 YPD4_RS06085 YPD4_1032 YPD4_RS06085 1323672 1325414 - multidrug ABC transporter ATP-binding protein gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06085 YPD4_RS06090 YPD4_1033 YPD4_RS06090 1325428 1326414 - transporter gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06090 YPD4_RS06095 YPD4_1034 YPD4_RS06095 1326466 1327176 - transcriptional regulator gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06095 YPD4_RS06100 YPD4_1035 YPD4_RS06100 1327567 1328922 + RNA helicase this helicase is not essential cell growth gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06100 YPD4_RS06105 YPD4_RS06105 YPD4_RS06105 1329052 1329318 + transposase gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06105 YPD4_RS06110 YPD4_RS06110 YPD4_RS06110 1330136 1330330 + hypothetical protein gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06110 YPD4_RS06115 YPD4_RS06115 YPD4_RS06115 1330364 1330690 + hypothetical protein gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06115 YPD4_RS06125 YPD4_RS06125 YPD4_RS06125 1331151 1331465 + hypothetical protein gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06125 YPD4_RS06130 YPD4_RS06130 YPD4_RS06130 1331640 1332847 + transposase gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06130 YPD4_RS06135 YPD4_1040 YPD4_RS06135 1332939 1333529 + transposase gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06135 YPD4_RS06140 YPD4_1041 YPD4_RS06140 1333447 1334448 + ATP-dependent RNA helicase RhlE this helicase is not essential cell growth gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06140 YPD4_RS06145 YPD4_RS06145 YPD4_RS06145 1334514 1334669 + invasin gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06145 YPD4_RS06150 YPD4_1042 YPD4_RS06150 1334659 1335117 + transposase gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06150 YPD4_RS06155 YPD4_1043 YPD4_RS06155 1335532 1336461 + hypothetical protein gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06155 YPD4_RS06160 YPD4_1044 YPD4_RS06160 1336761 1337699 + tRNA-dihydrouridine synthase C gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06160 YPD4_RS06165 YPD4_RS06165 YPD4_RS06165 1337773 1337952 - membrane protein gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06165 YPD4_RS06170 YPD4_1045 pbpG pbpG 1338291 1339226 + D-alanyl-D-alanine endopeptidase specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi%3B Penicillin-binding protein 7 gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06170 YPD4_RS06175 YPD4_1046 YPD4_RS06175 1339347 1341059 - lactate dehydrogenase component of the membrane-bound D-lactate oxidase%2C FAD-binding%2C NADH independent gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06175 YPD4_RS06180 YPD4_1047 YPD4_RS06180 1341269 1341808 + adenylate cyclase gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06180 YPD4_RS06185 YPD4_1048 YPD4_RS06185 1341834 1342175 - hypothetical protein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06185 YPD4_RS06190 YPD4_1049 YPD4_RS06190 1342488 1343591 + hypothetical protein gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06190 YPD4_RS06195 YPD4_RS06195 YPD4_RS06195 1343776 1344024 + membrane protein gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06195 YPD4_RS06200 YPD4_1050 YPD4_RS06200 1344232 1345068 + phosphonates import ATP-binding protein PhnC gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06200 YPD4_RS06205 YPD4_1051 YPD4_RS06205 1345105 1346034 + phosphonate ABC transporter substrate-binding protein gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06205 YPD4_RS06210 YPD4_1052 YPD4_RS06210 1346137 1346997 + phosphonate ABC transporter permease gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06210 YPD4_RS06215 YPD4_1053 YPD4_RS06215 1347000 1347881 + phosphonate ABC transporter permease gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06215 YPD4_RS06220 YPD4_1054 YPD4_RS06220 1348127 1348600 + hypothetical protein gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06220 YPD4_RS06225 YPD4_1055 YPD4_RS06225 1349035 1350303 + branched-chain amino acid ABC transporter substrate-binding protein gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06225 YPD4_RS06230 YPD4_1056 YPD4_RS06230 1350427 1352028 + urea ABC transporter permease gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06230 YPD4_RS06235 YPD4_1057 YPD4_RS06235 1352028 1353104 + amino acid ABC transporter permease gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06235 YPD4_RS06240 YPD4_1058 YPD4_RS06240 1353101 1353937 + ABC transporter ATP-binding protein gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06240 YPD4_RS06245 YPD4_1059 YPD4_RS06245 1354031 1354729 + ABC transporter ATP-binding protein gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06245 YPD4_RS06250 YPD4_1060 YPD4_RS06250 1354844 1355701 + hypothetical protein gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06250 YPD4_RS06255 YPD4_1061 YPD4_RS06255 1355725 1357140 + amino acid decarboxylase gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06255 YPD4_RS06260 YPD4_1062 sseA sseA 1357360 1358214 - 3-mercaptopyruvate sulfurtransferase catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06260 YPD4_RS06265 YPD4_1063 YPD4_RS06265 1358950 1359417 + glycine/betaine ABC transporter substrate-binding protein gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06265 YPD4_RS06270 YPD4_1064 YPD4_RS06270 1359562 1359882 + glycine/betaine ABC transporter substrate-binding protein gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06270 YPD4_RS06275 YPD4_1065 YPD4_RS06275 1360143 1361297 + osmoprotectant uptake system permease gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06275 YPD4_RS06280 YPD4_1066 YPD4_RS06280 1361294 1362232 + ABC transporter ATP-binding protein gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06280 YPD4_RS06285 YPD4_1067 YPD4_RS06285 1362229 1363065 + osmoprotectant uptake system permease gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06285 YPD4_RS06290 YPD4_1068 YPD4_RS06290 1363549 1364883 + arginine/agmatine antiporter gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06290 YPD4_RS06295 YPD4_1069 YPD4_RS06295 1364953 1367259 + arginine decarboxylase biodegradative%3B catalyzes the formation of agmatine from arginine gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06295 YPD4_RS06300 YPD4_RS06300 YPD4_RS06300 1367377 1367580 - hypothetical protein gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06300 YPD4_RS06305 YPD4_1070 YPD4_RS06305 1367705 1368595 - multidrug transporter gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06305 YPD4_RS06310 YPD4_1071 YPD4_RS06310 1369007 1370122 - phosphoporin protein E gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06310 YPD4_RS06315 YPD4_1072 dinG dinG 1370392 1372572 + ATP-dependent DNA helicase DinG helicase involved in DNA repair and perhaps also replication gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06315 YPD4_RS06320 YPD4_1073 YPD4_RS06320 1372640 1374082 - catalase gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06320 YPD4_RS06325 YPD4_1074 YPD4_RS06325 1374440 1374982 + membrane protein gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06325 YPD4_RS06330 YPD4_1075 YPD4_RS06330 1375239 1376447 - tyrosine transporter TyrP tyrosine specific permease gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06330 YPD4_RS06335 YPD4_1076 YPD4_RS06335 1377066 1378259 + hypothetical protein gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06335 YPD4_RS06340 YPD4_1077 YPD4_RS06340 1378317 1378826 - ecotin serine protease inhibitor%2C inhibits trypsin and other proteases gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06340 YPD4_RS06345 YPD4_RS06345 YPD4_RS06345 1378861 1379118 - (2Fe-2S) ferredoxin gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06345 YPD4_RS06350 YPD4_1078 YPD4_RS06350 1379122 1380252 - ribonucleotide-diphosphate reductase subunit beta B2 or R2 protein%3B type 1a enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdA gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06350 YPD4_RS06355 YPD4_1079 YPD4_RS06355 1380415 1382703 - ribonucleotide-diphosphate reductase subunit alpha Catalyzes the rate-limiting step in dNTP synthesis gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06355 YPD4_RS06360 YPD4_1080 YPD4_RS06360 1383197 1383925 - ubiquinone biosynthesis O-methyltransferase Involved in ubiquinone biosynthesis gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06360 YPD4_RS06365 YPD4_1081 YPD4_RS06365 1384187 1386862 + DNA gyrase subunit A gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06365 YPD4_RS06370 YPD4_RS06370 YPD4_RS06370 1386865 1386990 + hypothetical protein gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06370 YPD4_RS06375 YPD4_1082 YPD4_RS06375 1387143 1389923 + sensor histidine kinase gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06375 YPD4_RS06380 YPD4_1083 YPD4_RS06380 1389991 1390644 - transcriptional regulator two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division%3B probably phosphorylated by RcsC or RcsF gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06380 YPD4_RS06385 YPD4_1084 YPD4_RS06385 1390647 1391219 - histidine phosphotransferase gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06385 YPD4_RS06390 YPD4_1085 YPD4_RS06390 1391387 1393264 - ATPase gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06390 YPD4_RS06395 YPD4_1086 YPD4_RS06395 1393363 1394517 - MFS transporter gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06395 YPD4_RS06405 YPD4_1087 YPD4_RS06405 1395620 1396735 + porin gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06405 YPD4_RS06410 YPD4_1088 YPD4_RS06410 1396937 1397395 + transposase gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06410 YPD4_RS06415 YPD4_t16 YPD4_RS06415 1397829 1397916 + tRNA-Ser tRNA gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06415 YPD4_RS06420 YPD4_t17 YPD4_RS06420 1397922 1397997 + tRNA-Thr tRNA gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06420 YPD4_RS06425 YPD4_1089 YPD4_RS06425 1398185 1399351 - beta-lactam-binding protein AmpH this protein has no known enzymatic function gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06425 YPD4_RS06430 YPD4_RS06430 YPD4_RS06430 1399469 1399639 + hypothetical protein gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06430 YPD4_RS06435 YPD4_1090 YPD4_RS06435 1399626 1401152 - MFS transporter gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06435 YPD4_RS06440 YPD4_1091 YPD4_RS06440 1401568 1402557 + MBL fold metallo-hydrolase gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06440 YPD4_RS06445 YPD4_1092 YPD4_RS06445 1402631 1404418 - methyl-accepting chemotaxis protein gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06445 YPD4_RS06450 YPD4_1093 YPD4_RS06450 1404840 1405775 - outer membrane protease gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06450 YPD4_RS06455 YPD4_RS06455 YPD4_RS06455 1405947 1406189 - virulence protein MsgA gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06455 YPD4_RS06460 YPD4_1094 YPD4_RS06460 1406395 1407117 - peptidase S24 gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06460 YPD4_RS06465 YPD4_1095 YPD4_RS06465 1407391 1407870 + antitermination protein Q gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06465 YPD4_RS06470 YPD4_1096 YPD4_RS06470 1408081 1409385 + tRNA synthetase gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06470 YPD4_RS06475 YPD4_1097 YPD4_RS06475 1409442 1410091 + aldolase gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06475 YPD4_RS06480 YPD4_1098 YPD4_RS06480 1410097 1410906 + alkaline phosphatase gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06480 YPD4_RS06485 YPD4_1099 YPD4_RS06485 1410882 1411676 + hydroxypyruvate isomerase gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06485 YPD4_RS06490 YPD4_RS06490 YPD4_RS06490 1412307 1412597 + hypothetical protein gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06490 YPD4_RS06495 YPD4_1100 YPD4_RS06495 1412691 1413260 + ATP-binding protein gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06495 YPD4_RS06500 YPD4_RS06500 YPD4_RS06500 1413265 1413459 + hypothetical protein gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06500 YPD4_RS06505 YPD4_1101 YPD4_RS06505 1413456 1414964 + tail protein gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06505 YPD4_RS06510 YPD4_1102 YPD4_RS06510 1414986 1415354 + phage tail protein gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06510 YPD4_RS06515 YPD4_RS06515 YPD4_RS06515 1415356 1415655 + hypothetical protein gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06515 YPD4_RS06520 YPD4_1103 YPD4_RS06520 1415776 1417269 + coat protein gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06520 YPD4_RS06525 YPD4_1104 YPD4_RS06525 1417536 1418942 + hypothetical protein gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06525 YPD4_RS06530 YPD4_1105 YPD4_RS06530 1418939 1419994 + tail protein gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06530 YPD4_RS06535 YPD4_1106 YPD4_RS06535 1420010 1420606 + baseplate assembly protein gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06535 YPD4_RS06540 YPD4_1107 YPD4_RS06540 1420603 1421058 + hypothetical protein gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06540 YPD4_RS06545 YPD4_1108 YPD4_RS06545 1421062 1422198 + hypothetical protein gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06545 YPD4_RS06550 YPD4_RS06550 YPD4_RS06550 1422195 1422455 + hypothetical protein gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06550 YPD4_RS06555 YPD4_1109 YPD4_RS06555 1422452 1422799 + hypothetical protein gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06555 YPD4_RS06560 YPD4_1110 YPD4_RS06560 1422896 1423675 + tail protein gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06560 YPD4_RS06565 YPD4_1111 YPD4_RS06565 1423973 1424713 + transcriptional regulator gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06565 YPD4_RS06570 YPD4_1112 YPD4_RS06570 1425004 1426440 + 6-phospho-beta-glucosidase gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06570 YPD4_RS06575 YPD4_1113 YPD4_RS06575 1426566 1426928 - hypothetical protein gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06575 YPD4_RS06585 YPD4_1114 YPD4_RS06585 1427628 1428116 - hypothetical protein gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06585 YPD4_RS06590 YPD4_1115 YPD4_RS06590 1428129 1429277 - HNH endonuclease gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06590 YPD4_RS06600 YPD4_t18 YPD4_RS06600 1430067 1430143 - tRNA-Pro tRNA gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06600 YPD4_RS06605 YPD4_1117 YPD4_RS06605 1430248 1432044 - membrane protein gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06605 YPD4_RS06610 YPD4_RS06610 YPD4_RS06610 1432072 1432299 - hypothetical protein gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06610 YPD4_RS06615 YPD4_1118 YPD4_RS06615 1432477 1433481 + nucleoid-associated protein gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06615 YPD4_RS06620 YPD4_RS06620 YPD4_RS06620 1433537 1433692 + invasin gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06620 YPD4_RS06625 YPD4_1119 YPD4_RS06625 1433682 1434140 + transposase gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06625 YPD4_RS06630 YPD4_RS06630 YPD4_RS06630 1434279 1434563 - 50S ribosomal protein L25 the Ctc family of proteins consists of two types%2C one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06630 YPD4_RS06635 YPD4_1120 YPD4_RS06635 1434725 1436482 - hypothetical protein gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06635 YPD4_RS06640 YPD4_1121 YPD4_RS06640 1436996 1437703 + ribosomal small subunit pseudouridine synthase A catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06640 YPD4_RS06645 YPD4_1122 YPD4_RS06645 1437822 1439021 + Bcr/CflA family drug resistance efflux transporter Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06645 YPD4_RS06650 YPD4_1123 YPD4_RS06650 1439988 1440332 + hypothetical protein gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06650 YPD4_RS06655 YPD4_1124 YPD4_RS06655 1440393 1441985 - ABC transporter ATP-binding protein with YejAEF is involved in resistance to microcin C gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06655 YPD4_RS06660 YPD4_1125 YPD4_RS06660 1441987 1443012 - microcin C ABC transporter permease part of the microcin C transport system gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06660 YPD4_RS06665 YPD4_1126 YPD4_RS06665 1443015 1444115 - microcin C ABC transporter permease YejB with YejAEF is involved in resistance to microcin C gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06665 YPD4_RS06670 YPD4_1127 YPD4_RS06670 1444125 1445933 - peptide ABC transporter substrate-binding protein with YejBEF is involved in resistance to microcin C gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06670 YPD4_RS06675 YPD4_1128 YPD4_RS06675 1446015 1447487 - phage resistance protein involved in resistance to the phages N4 and lambda gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06675 YPD4_RS06680 YPD4_1129 spr spr 1448183 1448767 - hypothetical protein mutational suppressor of prc thermosensitivity gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06680 YPD4_RS06685 YPD4_1130 YPD4_RS06685 1449209 1449910 - membrane protein gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06685 YPD4_RS06690 YPD4_1131 YPD4_RS06690 1449969 1450952 - hypothetical protein gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06690 YPD4_RS06695 YPD4_RS06695 YPD4_RS06695 1451276 1451389 - hypothetical protein gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06695 YPD4_RS06700 YPD4_1132 YPD4_RS06700 1451760 1452503 + transcriptional regulator regulates the expression of uxuBA gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06700 YPD4_RS06705 YPD4_1133 YPD4_RS06705 1452647 1454119 - D-mannonate oxidoreductase gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06705 YPD4_RS06710 YPD4_1134 YPD4_RS06710 1454704 1455897 + mannonate dehydratase catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06710 YPD4_RS06715 YPD4_1135 YPD4_RS06715 1456037 1456609 - elongation factor P-like protein Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro%2C suggesting its involvement in the formation of the first peptide bond of a protein gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06715 YPD4_RS06720 YPD4_1136 YPD4_RS06720 1456713 1457957 - tryptophan permease tryptophan transporter of high affinity gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06720 YPD4_RS06725 YPD4_RS06725 YPD4_RS06725 1458332 1458586 + hypothetical protein gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06725 YPD4_RS06730 YPD4_1137 YPD4_RS06730 1458655 1459470 - 3-oxoacyl-ACP reductase gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06730 YPD4_RS06735 YPD4_1138 YPD4_RS06735 1459481 1460431 - dihydrofolate reductase gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06735 YPD4_RS06740 YPD4_1139 YPD4_RS06740 1460443 1461585 - fumarylacetoacetate hydrolase gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06740 YPD4_RS06745 YPD4_1140 YPD4_RS06745 1461937 1463433 + aldehyde dehydrogenase gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06745 YPD4_RS06750 YPD4_1141 YPD4_RS06750 1463437 1464990 + carbohydrate kinase gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06750 YPD4_RS06755 YPD4_1142 YPD4_RS06755 1465010 1465720 + ribose-5-phosphate isomerase A 2 gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06755 YPD4_RS06760 YPD4_1143 YPD4_RS06760 1465852 1466940 + sugar ABC transporter substrate-binding protein gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06760 YPD4_RS06765 YPD4_1144 YPD4_RS06765 1467109 1468623 + sugar ABC transporter ATP-binding protein gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06765 YPD4_RS06770 YPD4_1145 YPD4_RS06770 1468659 1469657 + sugar ABC transporter permease gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06770 YPD4_RS06775 YPD4_1146 YPD4_RS06775 1469770 1470226 - ADP-ribose pyrophosphatase gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06775 YPD4_RS06780 YPD4_1147 YPD4_RS06780 1470488 1471621 + PTS fructose transporter subunit IIA phosphoenolpyruvate (PEP)-dependent%2C sugar transporting phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIA is phosphorylated by phospho-HPr which then transfers the phosphoryl group to the IIB component gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06780 YPD4_RS06785 YPD4_1148 fruK fruK 1471618 1472556 + 1-phosphofructokinase converts fructose-1-phosphate and ATP to fructose-1%2C6-bisphosphate and ADP%3B highly specific for fructose-1-phopshate%3B similar to PfkB%3B forms homodimers gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06785 YPD4_RS06790 YPD4_1149 YPD4_RS06790 1472571 1474271 + PTS fructose transporter subunit IIBC phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06790 YPD4_RS06795 YPD4_1150 YPD4_RS06795 1474596 1475240 + protein PsaE gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06795 YPD4_RS06800 YPD4_1151 YPD4_RS06800 1475237 1475725 + protein PsaF gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06800 YPD4_RS06805 YPD4_1152 YPD4_RS06805 1476270 1476746 + pH 6 antigen gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06805 YPD4_RS06810 YPD4_1153 YPD4_RS06810 1476873 1477694 + chaperone protein PsaB gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06810 YPD4_RS06815 YPD4_1154 YPD4_RS06815 1477778 1480249 + usher protein gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06815 YPD4_RS06820 YPD4_1155 YPD4_RS06820 1480336 1481193 - endonuclease Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06820 YPD4_RS06825 YPD4_RS06825 YPD4_RS06825 1481357 1482446 - hypothetical protein gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06825 YPD4_RS06830 YPD4_RS06830 YPD4_RS06830 1483104 1483974 + transcriptional regulator gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06830 YPD4_RS06835 YPD4_1159 YPD4_RS06835 1484232 1485743 + lysine transporter gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06835 YPD4_RS06840 YPD4_1160 YPD4_RS06840 1486029 1487174 + iron ABC transporter substrate-binding protein gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06840 YPD4_RS06845 YPD4_1161 YPD4_RS06845 1487369 1488451 + iron-siderophore ABC transporter permease gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06845 YPD4_RS06850 YPD4_1162 YPD4_RS06850 1488448 1489236 + iron ABC transporter ATP-binding protein gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06850 YPD4_RS06855 YPD4_1163 YPD4_RS06855 1489496 1491493 + ligand-gated channel protein YiuR%3B outer membrane siderophore receptor gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06855 YPD4_RS06860 YPD4_1164 YPD4_RS06860 1491763 1492383 - glutathione S-transferase gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06860 YPD4_RS06865 YPD4_1165 YPD4_RS06865 1492537 1493187 - hydrolase gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06865 YPD4_RS06870 YPD4_1166 YPD4_RS06870 1493674 1494741 + 2-oxobutyrate oxidase gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06870 YPD4_RS06875 YPD4_1167 YPD4_RS06875 1494969 1495793 + metal ABC transporter substrate-binding protein gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06875 YPD4_RS06880 YPD4_1168 YPD4_RS06880 1495790 1496776 + ABC transporter ATP-binding protein gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06880 YPD4_RS06885 YPD4_1169 YPD4_RS06885 1496773 1497444 + metal ABC transporter permease gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06885 YPD4_RS06890 YPD4_1170 YPD4_RS06890 1497779 1498984 + D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 5%3B removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06890 YPD4_RS06895 YPD4_RS06895 YPD4_RS06895 1499275 1499427 + hypothetical protein gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06895 YPD4_RS06900 YPD4_1171 YPD4_RS06900 1499424 1500725 - serine transporter gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06900 YPD4_RS06905 YPD4_1172 YPD4_RS06905 1501825 1502589 - transcriptional regulator gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06905 YPD4_RS06910 YPD4_1173 YPD4_RS06910 1502819 1503490 - deoxyribose-phosphate aldolase gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06910 YPD4_RS06915 YPD4_1174 YPD4_RS06915 1503748 1504353 - UDP-diphosphatase gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06915 YPD4_RS06920 YPD4_1175 YPD4_RS06920 1504353 1505024 - phosphoesterase gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06920 YPD4_RS06925 YPD4_1176 YPD4_RS06925 1505501 1507189 - transporter gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06925 YPD4_RS06930 YPD4_RS06930 YPD4_RS06930 1507599 1507862 - glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase%3B also involved in reducing some disulfides in a coupled system with glutathione reductase gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06930 YPD4_RS06935 YPD4_RS06935 YPD4_RS06935 1508325 1508639 + membrane protein gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06935 YPD4_RS06940 YPD4_RS06940 YPD4_RS06940 1508655 1508774 + hypothetical protein gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06940 YPD4_RS06945 YPD4_1177 YPD4_RS06945 1508781 1509266 + hypothetical protein gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06945 YPD4_RS06950 YPD4_1178 YPD4_RS06950 1509784 1510893 + putrescine ABC transporter substrate-binding protein gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06950 YPD4_RS06955 YPD4_1179 potG potG 1511064 1512197 + putrescine ABC transporter ATP-binding protein part of the PotFGHI ATP-dependent putrescine transporter gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06955 YPD4_RS06960 YPD4_1180 YPD4_RS06960 1512222 1513187 + putrescine/spermidine ABC transporter permease gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06960 YPD4_RS06965 YPD4_1181 YPD4_RS06965 1513184 1514029 + putrescine/spermidine ABC transporter permease gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06965 YPD4_RS06970 YPD4_1182 YPD4_RS06970 1514154 1514618 + membrane protein gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06970 YPD4_RS06975 YPD4_RS06975 rumB rumB 1514702 1515831 + 23S rRNA methyltransferase RNA uridine methyltransferase B%3B catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06975 YPD4_RS06980 YPD4_1185 YPD4_RS06980 1515958 1516689 - arginine ABC transporter substrate-binding protein with ArtPMQI is involved in arginine transport gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06980 YPD4_RS06985 YPD4_RS06985 YPD4_RS06985 1516809 1516925 + hypothetical protein gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06985 YPD4_RS06990 YPD4_RS06990 YPD4_RS06990 1516937 1517167 + hypothetical protein gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06990 YPD4_RS06995 YPD4_1186 YPD4_RS06995 1517508 1518434 + SPFH/band 7 family protein gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS06995 YPD4_RS07000 YPD4_1187 YPD4_RS07000 1518846 1519937 + ABC transporter substrate-binding protein gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07000 YPD4_RS07005 YPD4_RS07005 YPD4_RS07005 1519937 1520993 + iron-siderophore ABC transporter permease gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07005 YPD4_RS07010 YPD4_1190 YPD4_RS07010 1520990 1521775 + iron ABC transporter ATP-binding protein gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07010 YPD4_RS07015 YPD4_1191 YPD4_RS07015 1521763 1522560 + nicotianamine synthase gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07015 YPD4_RS07020 YPD4_1192 YPD4_RS07020 1522553 1523923 + hypothetical protein gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07020 YPD4_RS07025 YPD4_1193 YPD4_RS07025 1523920 1524765 + membrane protein gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07025 YPD4_RS07035 YPD4_1194 artM artM 1524955 1525623 - arginine transporter permease subunit ArtM with ArtPQJI acts to transport arginine across the inner membrane gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07035 YPD4_RS07040 YPD4_1195 YPD4_RS07040 1525623 1526339 - arginine transporter permease subunit ArtQ with ArtPMJI transports arginine across the inner membrane gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07040 YPD4_RS07045 YPD4_1196 YPD4_RS07045 1526351 1527082 - arginine ABC transporter substrate-binding protein with ArtPMQI is involved in arginine transport gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07045 YPD4_RS07050 YPD4_1197 YPD4_RS07050 1527103 1527831 - arginine ABC transporter ATP-binding protein gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07050 YPD4_RS07055 YPD4_1198 YPD4_RS07055 1528126 1528686 - chorismate mutase catalyzes the interconversion of chorismate to prephenate gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07055 YPD4_RS07060 YPD4_1199 YPD4_RS07060 1528856 1529431 - lipoprotein induced during stationary phase and by acivicin (a glutamine analog)%3B regulated by Lrp and RpoS gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07060 YPD4_RS07065 YPD4_1200 YPD4_RS07065 1529528 1530535 - hypothetical protein gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07065 YPD4_RS07070 YPD4_1201 YPD4_RS07070 1530635 1532125 - hypothetical protein gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07070 YPD4_RS07075 YPD4_1202 YPD4_RS07075 1532122 1533141 - threonine aldolase low- specificity%3B catalyzes the formation of acetaldehyde and glycine from L-threonine%3B acts on L-threonine%2C L-allo-threonine%2C L-threo-phenylserine%2C and L-erythro-phenylserine gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07075 YPD4_RS07080 YPD4_1203 YPD4_RS07080 1533490 1535211 - pyruvate dehydrogenase catalyzes the formation of acetate from pyruvate gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07080 YPD4_RS07085 YPD4_1204 YPD4_RS07085 1535355 1536377 - oxidoreductase gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07085 YPD4_RS07090 YPD4_1205 YPD4_RS07090 1536491 1538143 - hydroxylamine reductase gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07090 YPD4_RS07095 YPD4_1206 YPD4_RS07095 1538345 1539241 - membrane protein gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07095 YPD4_RS07100 YPD4_1207 YPD4_RS07100 1539594 1541261 + hypothetical protein gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07100 YPD4_RS07105 YPD4_1208 YPD4_RS07105 1541398 1542345 - virulence factor gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07105 YPD4_RS07110 YPD4_1209 YPD4_RS07110 1542582 1543694 + macrolide transporter subunit MacA confers macrolide resistance via active drug efflux gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07110 YPD4_RS07115 YPD4_1210 YPD4_RS07115 1543694 1545643 + MacB family efflux pump subunit with MacA is involved in the export of macrolide gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07115 YPD4_RS07120 YPD4_RS07120 YPD4_RS07120 1545924 1546187 - cold-shock protein inhibits DNA replication at both initiation and elongation steps%3B stationary phase and starvation inducible gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07120 YPD4_RS07125 YPD4_1211 clpS clpS 1546548 1546868 + ATP-dependent Clp protease adapter protein ClpS involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation%3B binds to the N-terminal domain of the chaperone ClpA gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07125 YPD4_RS07130 YPD4_1212 clpA clpA 1546894 1549170 + ATP-dependent Clp protease ATP-binding subunit ClpA ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease%3B directs protease to specific substrates gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07130 YPD4_RS07135 YPD4_1213 YPD4_RS07135 1549463 1549921 + transposase gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07135 YPD4_RS07140 YPD4_RS07140 YPD4_RS07140 1550293 1550511 - translation initiation factor IF-1 gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07140 YPD4_RS07145 YPD4_RS07145 YPD4_RS07145 1550676 1551383 - leucyl/phenylalanyl-tRNA--protein transferase gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07145 YPD4_RS07150 YPD4_1215 YPD4_RS07150 1551602 1553326 - glutathione ABC transporter ATP-binding protein in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07150 YPD4_RS07155 YPD4_1216 YPD4_RS07155 1553329 1555095 - glutathione ABC transporter ATP-binding protein in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07155 YPD4_RS07160 YPD4_RS07160 YPD4_RS07160 1555312 1555449 + hypothetical protein gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07160 YPD4_RS07165 YPD4_1217 YPD4_RS07165 1555554 1556516 - thioredoxin reductase catalyzes the transfer of electrons from NADPH to thioredoxin%3B FAD/NAD(P) binding gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07165 YPD4_RS07170 YPD4_1218 YPD4_RS07170 1557283 1557777 + AsnC family transcriptional regulator mediates a global response to leucine%3B acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07170 YPD4_RS07175 YPD4_1219 YPD4_RS07175 1557900 1561817 + cell division protein FtsK gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07175 YPD4_RS07180 YPD4_1220 lolA lolA 1562010 1562618 + outer membrane lipoprotein carrier protein LolA participates with LolB in the incorporation of lipoprotein into the outer membrane gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07180 YPD4_RS07185 YPD4_1221 YPD4_RS07185 1562629 1563972 + recombinase RarA gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07185 YPD4_RS07190 YPD4_1222 YPD4_RS07190 1564214 1565506 + serine--tRNA ligase gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07190 YPD4_RS07195 YPD4_1223 YPD4_RS07195 1565737 1566885 + MFS transporter gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07195 YPD4_RS07200 YPD4_1224 pflA pflA 1567039 1567773 - pyruvate formate lyase-activating protein activates pyruvate formate-lyase 1 under anaerobic conditions gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07200 YPD4_RS07205 YPD4_1225 YPD4_RS07205 1568760 1569434 + LPS glycosyltransferase gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07205 YPD4_RS07210 YPD4_RS07210 YPD4_RS07210 1569552 1571833 - pyruvate formate-lyase formate acetyltransferase%3B catalyzes the formation of formate and acetyl-CoA from pyruvate gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07210 YPD4_RS07215 YPD4_1228 YPD4_RS07215 1571889 1572746 - formate transporter FocA gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07215 YPD4_RS07220 YPD4_1229 YPD4_RS07220 1573443 1575209 - hypothetical protein gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07220 YPD4_RS07225 YPD4_1230 ansB ansB 1575358 1576395 + L-asparaginase catalyzes the formation of aspartate from asparagine%2C periplasmic%3B regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07225 YPD4_RS07230 YPD4_1231 YPD4_RS07230 1576664 1577758 + hemagglutinin gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07230 YPD4_RS07235 YPD4_1232 YPD4_RS07235 1577966 1579627 + hypothetical protein gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07235 YPD4_RS07240 YPD4_1233 YPD4_RS07240 1579994 1581080 + phosphohydroxythreonine aminotransferase catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate%3B catalyzes 4 phosphohydroxy L-threonine from 2-oxo 3 hydroxy 4- phosphobutanoate%3B required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07240 YPD4_RS07245 YPD4_1234 YPD4_RS07245 1581243 1582529 + 3-phosphoshikimate 1-carboxyvinyltransferase gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07245 YPD4_RS07250 YPD4_1235 YPD4_RS07250 1582842 1583534 + cytidylate kinase gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07250 YPD4_RS07255 YPD4_1236 rpsA rpsA 1583708 1585381 + 30S ribosomal protein S1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit%3B autoregulates expression via a C-terminal domain%3B in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats%3B the S1 nucleic acid-binding domain is found associated with other proteins gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07255 YPD4_RS07260 YPD4_RS07260 ihfB ihfB 1585442 1585726 + integration host factor subunit beta This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07260 YPD4_RS07265 YPD4_RS07265 YPD4_RS07265 1585710 1586012 - hypothetical protein gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07265 YPD4_RS07270 YPD4_1237 YPD4_RS07270 1586273 1588564 + competence protein ComEC gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07270 YPD4_RS07275 YPD4_1238 YPD4_RS07275 1588600 1590348 + lipid A export ATP-binding/permease MsbA involved in the transport of lipid A across the inner membrane gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07275 YPD4_RS07280 YPD4_1239 lpxK lpxK 1590345 1591331 + tetraacyldisaccharide 4'-kinase transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1%2C4'-bis-phosphate gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07280 YPD4_RS07285 YPD4_1240 YPD4_RS07285 1591339 1592775 - hypothetical protein gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07285 YPD4_RS07290 YPD4_RS07290 YPD4_RS07290 1593059 1593256 - hypothetical protein gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07290 YPD4_RS07295 YPD4_RS07295 YPD4_RS07295 1593494 1593703 + cold-shock protein gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07295 YPD4_RS07300 YPD4_RS07300 YPD4_RS07300 1594251 1594433 + hypothetical protein gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07300 YPD4_RS07305 YPD4_1241 YPD4_RS07305 1594430 1595182 + 3-deoxy-manno-octulosonate cytidylyltransferase CMP-2-keto-3-deoxyoctulosonic acid synthetase%3B catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07305 YPD4_RS07310 YPD4_1242 YPD4_RS07310 1595545 1596438 + hypothetical protein gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07310 YPD4_RS07315 YPD4_RS07315 YPD4_RS07315 1596814 1596966 - hypothetical protein gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07315 YPD4_RS07320 YPD4_1243 YPD4_RS07320 1597211 1597996 + S-adenosyl-L-methionine-dependent methyltransferase gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07320 YPD4_RS07325 YPD4_1244 YPD4_RS07325 1597993 1599315 + chromosome partition protein MukF acts with MukB and MukE to condense the chromosome and allow for segregation during cell division gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07325 YPD4_RS07330 YPD4_1245 YPD4_RS07330 1599296 1600024 + condesin subunit E acts with MukB and MukF to condense the chromosome and allow for segregation during cell division gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07330 YPD4_RS07335 YPD4_1246 mukB mukB 1600021 1604478 + chromosome partition protein MukB SMC (structural maintenance of chromosomes) family of proteins%3B involved in chromosome condensatin and partitioning%3B forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ%3B mutations result in cell division defects gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07335 YPD4_RS07340 YPD4_RS07340 YPD4_RS07340 1604522 1604704 + invasin gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07340 YPD4_RS07345 YPD4_1247 YPD4_RS07345 1604694 1605152 + transposase gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07345 YPD4_RS07350 YPD4_RS07350 YPD4_RS07350 1605436 1607291 + peptidase gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07350 YPD4_RS07355 YPD4_1250 YPD4_RS07355 1607515 1608063 + hypothetical protein gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07355 YPD4_RS07360 YPD4_RS07360 YPD4_RS07360 1608124 1608770 + hypothetical protein gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07360 YPD4_RS07365 YPD4_1252 YPD4_RS07365 1609194 1610384 - aromatic amino acid aminotransferase gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07365 YPD4_RS07370 YPD4_1253 YPD4_RS07370 1610641 1611723 - porin allows for ions and hydrophilic solutes to cross the outer membrane gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07370 YPD4_RS07375 YPD4_1254 YPD4_RS07375 1612021 1613421 - asparagine--tRNA ligase gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07375 YPD4_RS07380 YPD4_1255 YPD4_RS07380 1613920 1615125 - nicotinate phosphoribosyltransferase catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07380 YPD4_RS07385 YPD4_RS07385 pepN pepN 1615841 1618455 + aminopeptidase gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07385 YPD4_RS07390 YPD4_1258 YPD4_RS07390 1619091 1620101 + dihydroorotate dehydrogenase catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07390 YPD4_RS07395 YPD4_1259 YPD4_RS07395 1620284 1620835 + cell division protein ZapC gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07395 YPD4_RS07400 YPD4_1260 YPD4_RS07400 1620861 1621970 - hypothetical protein gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07400 YPD4_RS07405 YPD4_1261 rlmL rlmL 1622073 1624193 + ribosomal RNA large subunit methyltransferase K/L catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07405 YPD4_RS07410 YPD4_1262 YPD4_RS07410 1624199 1626112 + ABC transporter ATP-binding protein Uup%3B in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity%3B mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07410 YPD4_RS07415 YPD4_1263 YPD4_RS07415 1626310 1627527 + paraquat-inducible protein A gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07415 YPD4_RS07420 YPD4_1264 YPD4_RS07420 1627514 1629166 + paraquat-inducible protein B gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07420 YPD4_RS07425 YPD4_1265 YPD4_RS07425 1629163 1629741 + lipoprotein gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07425 YPD4_RS07430 YPD4_RS07430 YPD4_RS07430 1629790 1629930 + hypothetical protein gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07430 YPD4_RS07435 YPD4_RS07435 YPD4_RS07435 1630011 1630178 + ribosome modulation factor gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07435 YPD4_RS07440 YPD4_RS07440 YPD4_RS07440 1630231 1630386 + invasin gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07440 YPD4_RS07445 YPD4_1266 YPD4_RS07445 1630376 1630834 + transposase gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07445 YPD4_RS07450 YPD4_1267 YPD4_RS07450 1630951 1631925 - 3-oxoacyl-ACP synthase FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07450 YPD4_RS07455 YPD4_1268 YPD4_RS07455 1631995 1632765 - transposase gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07455 YPD4_RS07460 YPD4_1269 YPD4_RS07460 1632774 1633796 - transposase gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07460 YPD4_RS07465 YPD4_1270 YPD4_RS07465 1633810 1634184 - hypothetical protein gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07465 YPD4_RS07470 YPD4_RS07470 YPD4_RS07470 1634430 1634618 + membrane protein gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07470 YPD4_RS07475 YPD4_1271 YPD4_RS07475 1634884 1635402 - 3-hydroxydecanoyl-ACP dehydratase catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2%2C3-decenoyl-ACP or 3%2C4-decenoyl-ACP gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07475 YPD4_RS07480 YPD4_1272 YPD4_RS07480 1635471 1637222 - ATP-dependent protease gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07480 YPD4_RS07485 YPD4_1273 YPD4_RS07485 1637433 1637888 + macrodomain Ter protein gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07485 YPD4_RS07490 YPD4_1274 YPD4_RS07490 1638057 1638515 - transposase gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07490 YPD4_RS07495 YPD4_RS07495 YPD4_RS07495 1638505 1638660 - invasin gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07495 YPD4_RS07500 YPD4_1275 YPD4_RS07500 1638705 1639766 - outer membrane protein A OmpA is believed to be a porin%2C involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli%2C and it is known to play a role as a phage receptor%2C a mediator of F-factor dependent conjugation%2C and in maintaining the structural shape of the outer membrane%3B 3a%3B II*%3B G%3B d gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07500 YPD4_RS07505 YPD4_1276 YPD4_RS07505 1640124 1640630 - cell division inhibitor SulA gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07505 YPD4_RS07510 YPD4_1277 YPD4_RS07510 1640859 1641494 + DNA transformation protein tfoX gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07510 YPD4_RS07515 YPD4_1278 YPD4_RS07515 1641596 1643734 - membrane protein gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07515 YPD4_RS07520 YPD4_1279 YPD4_RS07520 1643764 1644210 - membrane protein gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07520 YPD4_RS07525 YPD4_1280 helD helD 1644404 1646458 + DNA helicase IV catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07525 YPD4_RS07530 YPD4_1281 YPD4_RS07530 1646519 1646983 - methylglyoxal synthase gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07530 YPD4_RS07535 YPD4_1282 YPD4_RS07535 1647162 1647842 - hypothetical protein gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07535 YPD4_RS07540 YPD4_1283 YPD4_RS07540 1648159 1648575 + hypothetical protein gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07540 YPD4_RS07545 YPD4_1284 YPD4_RS07545 1648684 1649001 - heat-shock protein HspQ gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07545 YPD4_RS07550 YPD4_1285 YPD4_RS07550 1649062 1650252 - ribosomal RNA large subunit methyltransferase I SAM-dependent%3Bcatalyzes the methylation of cytosine at position 1962 of the 23S rRNA gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07550 YPD4_RS07555 YPD4_RS07555 YPD4_RS07555 1650346 1650624 + acylphosphatase catalyzes the hydrolysis of acylphosphate gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07555 YPD4_RS07560 YPD4_1286 YPD4_RS07560 1650676 1651005 - sulfurtransferase TusE transfers sulfur from TusBCD complex to MnmA%3B involved in thiouridation of U34 position of some tRNAs gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07560 YPD4_RS07565 YPD4_t19 YPD4_RS07565 1651246 1651333 + tRNA-Ser tRNA gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07565 YPD4_RS07570 YPD4_RS07570 YPD4_RS07570 1651753 1652040 + integrase gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07570 YPD4_RS07575 YPD4_1287 YPD4_RS07575 1652410 1652766 + cytotoxic necrotizing factor 1 domain protein gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07575 YPD4_RS07580 YPD4_RS07580 YPD4_RS07580 1652800 1653051 + cytotoxic necrotizing factor 1 domain protein gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07580 YPD4_RS07585 YPD4_1288 YPD4_RS07585 1653066 1654217 + cytotoxic necrotizing factor 1 domain protein gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07585 YPD4_RS07590 YPD4_1289 YPD4_RS07590 1654651 1657068 - oxidoreductase gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07590 YPD4_RS07595 YPD4_1290 YPD4_RS07595 1657222 1657968 - MFS transporter gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07595 YPD4_RS07600 YPD4_RS07600 YPD4_RS07600 1658699 1658917 + hypothetical protein gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07600 YPD4_RS07605 YPD4_1291 YPD4_RS07605 1659181 1659705 + 3-hydroxyacyl-ACP dehydratase gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07605 YPD4_RS07610 YPD4_1292 YPD4_RS07610 1659695 1660978 + beta-ketoacyl-ACP synthase gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07610 YPD4_RS07615 YPD4_1293 YPD4_RS07615 1660980 1661717 + 3-ketoacyl-ACP reductase gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07615 YPD4_RS07620 YPD4_1294 YPD4_RS07620 1661733 1662971 + hydroxymethylglutaryl-CoA synthase gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07620 YPD4_RS07625 YPD4_1295 YPD4_RS07625 1662964 1663683 + enoyl-CoA hydratase gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07625 YPD4_RS07630 YPD4_1296 YPD4_RS07630 1663685 1664437 + enoyl-CoA hydratase gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07630 YPD4_RS07635 YPD4_1297 YPD4_RS07635 1664440 1665228 + 3-oxoacyl-ACP reductase gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07635 YPD4_RS07640 YPD4_1298 YPD4_RS07640 1665423 1665755 + hypothetical protein gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07640 YPD4_RS07645 YPD4_RS07645 YPD4_RS07645 1665793 1666041 + acyl carrier protein gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07645 YPD4_RS07650 YPD4_1299 YPD4_RS07650 1666140 1666988 + acyltransferase gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07650 YPD4_RS07655 YPD4_RS07655 YPD4_RS07655 1667145 1667312 + hypothetical protein gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07655 YPD4_RS07660 YPD4_1300 YPD4_RS07660 1667977 1668477 + hypothetical protein gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07660 YPD4_RS07665 YPD4_1301 YPD4_RS07665 1668520 1670070 + hypothetical protein gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07665 YPD4_RS07670 YPD4_1302 YPD4_RS07670 1670082 1671434 + hypothetical protein gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07670 YPD4_RS07675 YPD4_1303 YPD4_RS07675 1671431 1672117 + hypothetical protein gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07675 YPD4_RS07680 YPD4_1304 YPD4_RS07680 1672117 1673853 + membrane protein gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07680 YPD4_RS07685 YPD4_1305 YPD4_RS07685 1673857 1674348 + hypothetical protein gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07685 YPD4_RS07690 YPD4_1306 YPD4_RS07690 1674766 1677414 + ATPase gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07690 YPD4_RS07695 YPD4_1307 YPD4_RS07695 1677411 1679759 + type IV secretion protein Rhs gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07695 YPD4_RS07700 YPD4_1308 YPD4_RS07700 1679774 1681996 + hydroxyethylthiazole kinase gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07700 YPD4_RS07705 YPD4_RS07705 YPD4_RS07705 1682140 1682496 + hypothetical protein gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07705 YPD4_RS07710 YPD4_RS07710 YPD4_RS07710 1682690 1682884 + hypothetical protein gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07710 YPD4_RS07715 YPD4_RS07715 YPD4_RS07715 1682913 1683188 + transposase gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07715 YPD4_RS07720 YPD4_RS07720 YPD4_RS07720 1683242 1683577 + transposase gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07720 YPD4_RS07725 YPD4_1309 YPD4_RS07725 1684109 1684744 + type IV secretion protein Rhs gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07725 YPD4_RS07730 YPD4_1310 YPD4_RS07730 1684760 1687060 + membrane protein gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07730 YPD4_RS07735 YPD4_1311 YPD4_RS07735 1687057 1687830 + hypothetical protein gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07735 YPD4_RS07740 YPD4_RS07740 YPD4_RS07740 1687984 1688244 + multidrug ABC transporter ATPase gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07740 YPD4_RS07745 YPD4_1312 YPD4_RS07745 1688260 1690443 + hypothetical protein gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07745 YPD4_RS07750 YPD4_RS07750 YPD4_RS07750 1690616 1691086 + hypothetical protein gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07750 YPD4_RS07755 YPD4_1313 YPD4_RS07755 1691819 1692139 - transposase gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07755 YPD4_RS07760 YPD4_1314 YPD4_RS07760 1693251 1694483 + hypothetical protein gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07760 YPD4_RS07765 YPD4_1315 YPD4_RS07765 1694480 1697902 + type VI secretion protein VasK gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07765 YPD4_RS07770 YPD4_1316 YPD4_RS07770 1697946 1699547 + hypothetical protein gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07770 YPD4_RS07775 YPD4_1317 YPD4_RS07775 1699565 1700623 + PAAR domain protein gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07775 YPD4_RS07780 YPD4_1318 YPD4_RS07780 1700638 1701093 + hypothetical protein gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07780 YPD4_RS07785 YPD4_1319 YPD4_RS07785 1701314 1703077 + type VI secretion protein ImpG gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07785 YPD4_RS07790 YPD4_1320 YPD4_RS07790 1703041 1704126 + hypothetical protein gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07790 YPD4_RS07795 YPD4_1321 YPD4_RS07795 1704101 1704682 + type VI secretion protein gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07795 YPD4_RS07800 YPD4_1322 YPD4_RS07800 1704682 1705134 + hypothetical protein gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07800 YPD4_RS07805 YPD4_1323 YPD4_RS07805 1705159 1706526 + membrane protein gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07805 YPD4_RS07810 YPD4_1324 YPD4_RS07810 1706738 1707361 - hypothetical protein gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07810 YPD4_RS07815 YPD4_1325 YPD4_RS07815 1708068 1709639 + heme ABC transporter ATP-binding protein gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07815 YPD4_RS07820 YPD4_1326 YPD4_RS07820 1709867 1710520 + hypothetical protein gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07820 YPD4_RS07825 YPD4_1327 YPD4_RS07825 1710564 1711772 - transposase gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07825 YPD4_RS07830 YPD4_1328 YPD4_RS07830 1711908 1712678 - molybdopterin-synthase adenylyltransferase gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07830 YPD4_RS07835 YPD4_1329 YPD4_RS07835 1712680 1713954 - molybdopterin biosynthesis protein MoeA is involved in the formation of active molybdenum cofactor and the chelation of molybdenum gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07835 YPD4_RS07840 YPD4_1330 YPD4_RS07840 1714489 1715799 - radical SAM/SPASM domain-containing protein gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07840 YPD4_RS07845 YPD4_1331 YPD4_RS07845 1715809 1716477 - ABC transporter ATP-binding protein gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07845 YPD4_RS07850 YPD4_1332 YPD4_RS07850 1716479 1717741 - RND transporter gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07850 YPD4_RS07855 YPD4_1333 YPD4_RS07855 1717743 1720103 - membrane protein gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07855 YPD4_RS07860 YPD4_RS07860 YPD4_RS07860 1720187 1720387 - hypothetical protein gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07860 YPD4_RS07870 YPD4_1334 YPD4_RS07870 1720656 1721498 - S-formylglutathione hydrolase gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07870 YPD4_RS07875 YPD4_1335 YPD4_RS07875 1721519 1722658 - S-(hydroxymethyl)glutathione dehydrogenase catalyzes the formation of S-formylglutathione from S-(hydroxymethyl)glutathione%3B also catalyzes the formation of aldehyde or ketone from alcohols gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07875 YPD4_RS07880 YPD4_1336 YPD4_RS07880 1722932 1723801 - LysR family transcriptional regulator gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07880 YPD4_RS07885 YPD4_1337 YPD4_RS07885 1723937 1725088 + MFS transporter gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07885 YPD4_RS07890 YPD4_1338 folE folE 1725272 1725934 + GTP cyclohydrolase 1 involved in the first step of tetrahydrofolate biosynthesis%3B catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1%2C2%2C3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water%3B forms a homopolymer gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07890 YPD4_RS07895 YPD4_1339 YPD4_RS07895 1725989 1727155 + membrane protein gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07895 YPD4_RS07900 YPD4_1340 YPD4_RS07900 1727903 1728895 + methyl-galactoside ABC transporter substrate-binding protein wtih MglAC is involved in the transport of beta-methylgalactoside gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07900 YPD4_RS07905 YPD4_1341 YPD4_RS07905 1729125 1730645 + galactose/methyl galactoside import ATP-binding protein MglA gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07905 YPD4_RS07910 YPD4_1342 mglC mglC 1730666 1731676 + beta-methylgalactoside transporter ABC transporter%3B functions in galactose transport%3B part of MglA2C2B transporter complex gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07910 YPD4_RS07915 YPD4_1343 YPD4_RS07915 1732121 1732858 - vancomycin high temperature exclusion protein involved in vancomycin sensitivity and other barrier functions of the cell envelope gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07915 YPD4_RS07920 YPD4_1344 YPD4_RS07920 1733139 1734836 - NAD-dependent malic enzyme malic enzyme%3B oxaloacetate-decarboxylating%3B NAD-dependent%3B catalyzes the formation of pyruvate form malate gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07920 YPD4_RS07925 YPD4_1345 YPD4_RS07925 1735192 1736076 - cytidine deaminase Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07925 YPD4_RS07930 YPD4_1346 YPD4_RS07930 1736402 1737097 - membrane protein gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07930 YPD4_RS07935 YPD4_1347 YPD4_RS07935 1737094 1737501 - hypothetical protein gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07935 YPD4_RS07940 YPD4_1348 YPD4_RS07940 1737743 1738924 - multidrug resistance protein gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07940 YPD4_RS07945 YPD4_1349 YPD4_RS07945 1739257 1740510 - hypothetical protein gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07945 YPD4_RS07950 YPD4_1350 YPD4_RS07950 1740528 1741604 - sugar ABC transporter substrate-binding protein gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07950 YPD4_RS07955 YPD4_1351 YPD4_RS07955 1742302 1742964 + membrane protein gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07955 YPD4_RS07960 YPD4_RS07960 YPD4_RS07960 1743004 1743192 + hypothetical protein gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07960 YPD4_RS07965 YPD4_1352 YPD4_RS07965 1743182 1743640 + transposase gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07965 YPD4_RS07970 YPD4_1353 metG metG 1743804 1745831 - methionine--tRNA ligase methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07970 YPD4_RS07975 YPD4_1354 YPD4_RS07975 1746096 1747208 + ATPase gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07975 YPD4_RS07980 YPD4_1355 YPD4_RS07980 1747453 1748094 + uridine kinase gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07980 YPD4_RS07985 YPD4_1356 YPD4_RS07985 1748199 1748780 + deoxycytidine triphosphate deaminase gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07985 YPD4_RS07990 YPD4_1357 YPD4_RS07990 1748967 1750823 + membrane assembly protein AsmA gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07990 YPD4_RS07995 YPD4_1358 YPD4_RS07995 1750968 1752581 - membrane protein gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS07995 YPD4_RS08000 YPD4_1359 YPD4_RS08000 1753023 1753802 + iron reductase gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08000 YPD4_RS08005 YPD4_1360 YPD4_RS08005 1753954 1755501 + cytochrome C biogenesis protein CcmH gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08005 YPD4_RS08010 YPD4_1361 YPD4_RS08010 1755536 1756834 + lysine N6-hydroxylase/L-ornithine N5-oxygenase family gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08010 YPD4_RS08015 YPD4_1362 YPD4_RS08015 1756834 1757412 + siderophore biosynthesis protein gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08015 YPD4_RS08020 YPD4_1363 YPD4_RS08020 1757409 1759253 + siderophore biosynthetic enzyme gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08020 YPD4_RS08025 YPD4_1364 YPD4_RS08025 1759362 1760180 - ABC transporter with FepBDE is involved in the transport of ferric enterobactin gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08025 YPD4_RS08030 YPD4_1365 YPD4_RS08030 1760207 1761247 - iron ABC transporter permease gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08030 YPD4_RS08035 YPD4_1366 YPD4_RS08035 1761234 1762274 - iron ABC transporter permease gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08035 YPD4_RS08040 YPD4_1367 YPD4_RS08040 1762271 1763350 - iron-siderophore ABC transporter substrate-binding protein gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08040 YPD4_RS08045 YPD4_1368 YPD4_RS08045 1763440 1765701 - TonB-dependent receptor gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08045 YPD4_RS08050 YPD4_1369 YPD4_RS08050 1765914 1767728 - siderophore biosynthesis protein%2C IucA/IucC family gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08050 YPD4_RS08055 YPD4_1370 YPD4_RS08055 1768674 1769564 + UTP--glucose-1-phosphate uridylyltransferase together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase%2C an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate%3B regulates cellular levels of UDP-glucose gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08055 YPD4_RS08060 YPD4_1371 YPD4_RS08060 1769648 1770541 + UTP--glucose-1-phosphate uridylyltransferase gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08060 YPD4_RS08065 YPD4_1372 YPD4_RS08065 1770927 1772336 + 6-phosphogluconate dehydrogenase catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08065 YPD4_RS08070 YPD4_1373 YPD4_RS08070 1772536 1773150 - histidine biosynthesis bifunctional protein HisIE catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08070 YPD4_RS08075 YPD4_1374 YPD4_RS08075 1773144 1773920 - imidazole glycerol phosphate synthase subunit HisF gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08075 YPD4_RS08080 YPD4_1375 YPD4_RS08080 1773902 1774639 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08080 YPD4_RS08085 YPD4_1376 hisH hisH 1774645 1775235 - imidazole glycerol phosphate synthase subunit HisH with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamide ribonucleotide%2C and glutamate in histidine biosynthesis%3B the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08085 YPD4_RS08090 YPD4_1377 YPD4_RS08090 1775235 1776302 - histidine biosynthesis bifunctional protein HisB catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08090 YPD4_RS08095 YPD4_1378 YPD4_RS08095 1776299 1777447 - histidinol-phosphate aminotransferase catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08095 YPD4_RS08100 YPD4_1379 hisD hisD 1777450 1778781 - histidinol dehydrogenase catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08100 YPD4_RS08105 YPD4_1380 hisG hisG 1778785 1779684 - ATP phosphoribosyltransferase long form of enzyme%3B catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate%3B crucial role in histidine biosynthesis%3B forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08105 YPD4_RS08110 YPD4_1381 YPD4_RS08110 1780390 1781217 + hypothetical protein gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08110 YPD4_RS08115 YPD4_1382 YPD4_RS08115 1781372 1781806 - gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08115 YPD4_RS08120 YPD4_1383 YPD4_RS08120 1782051 1783046 - sugar ABC transporter permease gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08120 YPD4_RS08125 YPD4_1384 YPD4_RS08125 1783043 1783732 - sugar ABC transporter gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08125 YPD4_RS08130 YPD4_1385 YPD4_RS08130 1783690 1784583 - sugar ABC transporter gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08130 YPD4_RS08135 YPD4_1386 YPD4_RS08135 1784869 1785960 + oxidoreductase member of the iron-containing alcohol dehydrogenase family gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08135 YPD4_RS08140 YPD4_RS08140 YPD4_RS08140 1786215 1786430 + hypothetical protein gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08140 YPD4_RS08145 YPD4_1387 YPD4_RS08145 1786420 1787811 + putrescine/spermidine ABC transporter gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08145 YPD4_RS08150 YPD4_1388 sbcB sbcB 1788548 1789978 - exonuclease I Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08150 YPD4_RS08155 YPD4_1389 YPD4_RS08155 1790271 1791380 + thiamine biosynthesis protein ThiF gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08155 YPD4_RS08160 YPD4_RS08160 YPD4_RS08160 1791814 1792130 + hypothetical protein gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08160 YPD4_RS08165 YPD4_1390 YPD4_RS08165 1792501 1793709 + transposase gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08165 YPD4_RS08170 YPD4_1391 YPD4_RS08170 1793672 1796824 - adhesin gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08170 YPD4_RS08175 YPD4_1392 YPD4_RS08175 1797849 1799153 + MFS transporter gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08175 YPD4_RS08180 YPD4_1393 YPD4_RS08180 1799162 1799584 - thiol-disulfide oxidoreductase gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08180 YPD4_RS08185 YPD4_1394 YPD4_RS08185 1800012 1800752 + oxidoreductase gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08185 YPD4_RS08190 YPD4_1395 YPD4_RS08190 1800800 1801642 + hydrolase gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08190 YPD4_RS08195 YPD4_1396 YPD4_RS08195 1801674 1802951 + fuconate dehydratase gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08195 YPD4_RS08200 YPD4_1397 lldD lldD 1803248 1804393 + lactate dehydrogenase flavin mononucleotide-dependent dehydrogenase%3B functions in aerobic respiration and also has a role in anaerobic nitrate respiration gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08200 YPD4_RS08205 YPD4_1398 YPD4_RS08205 1804598 1805965 - argininosuccinate synthase catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08205 YPD4_RS08210 YPD4_1399 YPD4_RS08210 1806292 1807689 + MATE family multidrug exporter gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08210 YPD4_RS08215 YPD4_1400 YPD4_RS08215 1807717 1809057 - sugar transporter gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08215 YPD4_RS08220 YPD4_1401 YPD4_RS08220 1809093 1809974 - hypothetical protein gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08220 YPD4_RS08225 YPD4_1402 YPD4_RS08225 1810551 1811246 + hypothetical protein gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08225 YPD4_RS08230 YPD4_1403 YPD4_RS08230 1811336 1811875 + hypothetical protein gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08230 YPD4_RS08235 YPD4_t20 YPD4_RS08235 1812221 1812296 - tRNA-Asn tRNA gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08235 YPD4_RS08240 YPD4_1404 YPD4_RS08240 1812742 1813371 - transcriptional regulator gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08240 YPD4_RS08245 YPD4_1405 YPD4_RS08245 1813629 1814921 - membrane protein gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08245 YPD4_RS08250 YPD4_1406 YPD4_RS08250 1814941 1815447 - C4-dicarboxylate ABC transporter gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08250 YPD4_RS08255 YPD4_1407 YPD4_RS08255 1815571 1816563 - C4-dicarboxylate ABC transporter gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08255 YPD4_RS08260 YPD4_1408 YPD4_RS08260 1817086 1817826 + 4'-phosphopantetheinyl transferase gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08260 YPD4_RS08265 YPD4_RS08265 YPD4_RS08265 1818032 1818196 - hypothetical protein gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08265 YPD4_RS08270 YPD4_1409 YPD4_RS08270 1818213 1820339 - alpha-galactosidase gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08270 YPD4_RS08275 YPD4_1410 lacY lacY 1820417 1821694 - galactoside permease lactose/proton symporter%3B mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides%3B member of major facilitator superfamily%3B functions as a monomer with 12 transmembrane segments gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08275 YPD4_RS08280 YPD4_1411 YPD4_RS08280 1821719 1822927 + transposase gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08280 YPD4_RS08285 YPD4_1412 YPD4_RS08285 1823178 1823843 - 2-deoxyglucose-6-phosphatase YniC%3B catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate%2C mannose 6-phosphate and p-nitrophenyl phosphate gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08285 YPD4_RS08290 YPD4_1413 YPD4_RS08290 1824254 1824808 + yfeABCD regulator yfeE gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08290 YPD4_RS08295 YPD4_1414 YPD4_RS08295 1824937 1825812 - hypothetical protein gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08295 YPD4_RS08300 YPD4_RS08300 YPD4_RS08300 1825837 1826049 - membrane protein gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08300 YPD4_RS08305 YPD4_1415 YPD4_RS08305 1826117 1827010 - chelated iron transport system membrane protein YfeD gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08305 YPD4_RS08310 YPD4_1416 YPD4_RS08310 1827007 1827891 - chelated iron transport system membrane protein YfeC gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08310 YPD4_RS08315 YPD4_1417 YPD4_RS08315 1827891 1828781 - chelated iron transport system membrane protein YfeB gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08315 YPD4_RS08320 YPD4_1418 YPD4_RS08320 1828778 1829746 - iron-binding protein gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08320 YPD4_RS08325 YPD4_1419 YPD4_RS08325 1829958 1830620 + lytic transglycosylase gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08325 YPD4_RS08330 YPD4_1420 YPD4_RS08330 1830742 1831425 - membrane protein gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08330 YPD4_RS08335 YPD4_RS08335 YPD4_RS08335 1831744 1831995 + hypothetical protein gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08335 YPD4_RS08340 YPD4_RS08340 YPD4_RS08340 1832067 1832444 - membrane protein gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08340 YPD4_RS08345 YPD4_RS08345 YPD4_RS08345 1832754 1832966 - hypothetical protein gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08345 YPD4_RS08350 YPD4_1421 thrS thrS 1833357 1835285 + threonine--tRNA ligase catalyzes a two-step reaction%2C first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08350 YPD4_RS08355 YPD4_1422 YPD4_RS08355 1835490 1835840 + translation initiation factor IF-3 gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08355 YPD4_RS08360 YPD4_RS08360 YPD4_RS08360 1835937 1836134 + 50S ribosomal protein L35 gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08360 YPD4_RS08365 YPD4_1423 rplT rplT 1836172 1836528 + 50S ribosomal protein L20 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08365 YPD4_RS08370 YPD4_1424 YPD4_RS08370 1837027 1838010 + phenylalanine--tRNA ligase subunit alpha gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08370 YPD4_RS08375 YPD4_1425 pheT pheT 1838024 1840411 + phenylalanine--tRNA ligase subunit beta catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a tetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 2 subfamily gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08375 YPD4_RS08380 YPD4_RS08380 ihfA ihfA 1840416 1840712 + integration host factor subunit alpha This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08380 YPD4_RS08385 YPD4_1426 YPD4_RS08385 1841046 1841504 + hypothetical protein gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08385 YPD4_RS08390 YPD4_1427 YPD4_RS08390 1841731 1842738 + vitamin B12 import system permease BtuC gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08390 YPD4_RS08395 YPD4_1428 btuE btuE 1842808 1843362 + glutathione peroxidase similar to glutathione peroxidase%3B member of the btuCED operon which is required for vitamin B12 transport across the inner membrane gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08395 YPD4_RS08400 YPD4_1429 YPD4_RS08400 1843387 1844145 + vitamin B12 ABC transporter ATP-binding protein gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08400 YPD4_RS08405 YPD4_1430 YPD4_RS08405 1844495 1845650 + UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08405 YPD4_RS08410 YPD4_1431 YPD4_RS08410 1845637 1846620 + undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08410 YPD4_RS08415 YPD4_1432 YPD4_RS08415 1846617 1848620 + bifunctional polymyxin resistance protein ArnA Bifunctional polymyxin resistance arnA protein%3B catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose%3B active in certain mutant strains gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08415 YPD4_RS08420 YPD4_1433 YPD4_RS08420 1848617 1849522 + 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD catalyzes the formation of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08420 YPD4_RS08425 YPD4_1434 arnT arnT 1849519 1851183 + undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08425 YPD4_RS08430 YPD4_1435 YPD4_RS08430 1851180 1851524 + 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08430 YPD4_RS08435 YPD4_1436 YPD4_RS08435 1851521 1851907 + 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08435 YPD4_RS08440 YPD4_1437 YPD4_RS08440 1852187 1852651 + lipoprotein gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08440 YPD4_RS08445 YPD4_1438 lplA lplA 1852776 1853792 + lipoate-protein ligase A Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08445 YPD4_RS08450 YPD4_RS08450 YPD4_RS08450 1853844 1855307 + hypothetical protein gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08450 YPD4_RS08455 YPD4_1441 YPD4_RS08455 1855476 1856522 - phospho-2-dehydro-3-deoxyheptonate aldolase gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08455 YPD4_RS08460 YPD4_1442 YPD4_RS08460 1856679 1857500 - PEP synthetase regulatory protein gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08460 YPD4_RS08465 YPD4_1443 YPD4_RS08465 1857837 1860221 + phosphoenolpyruvate synthase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08465 YPD4_RS08470 YPD4_1444 YPD4_RS08470 1860820 1861923 - membrane protein YdiK%3B inner membrane protein%3B ydiK promoter presents a PurR sequence%2C suggesting that its expression is purine-regulated%3B unknown function gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08470 YPD4_RS08475 YPD4_1445 YPD4_RS08475 1862544 1865600 + membrane protein gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08475 YPD4_RS08480 YPD4_1446 YPD4_RS08480 1865722 1866138 + acyl-CoA esterase required for efficient enterobactin production gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08480 YPD4_RS08485 YPD4_RS08485 YPD4_RS08485 1866397 1866555 + hypothetical protein gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08485 YPD4_RS08490 YPD4_1447 sufA sufA 1866733 1867104 + (Fe-S)-cluster assembly protein functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]%3B [4Fe-4S]) are assembled%3B forms a homodimer%3B similar to IscA protein gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08490 YPD4_RS08495 YPD4_1448 YPD4_RS08495 1867119 1868630 + Fe-S cluster assembly protein SufB with SufCD activates cysteine desulfurase SufS gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08495 YPD4_RS08500 YPD4_1449 sufC sufC 1868816 1869562 + Fe-S cluster assembly ATPase SufC part of SUF system involved in inserting iron-sulfur clusters into proteins%3B in Escherichia coli this protein forms a complex with SufBD%3B the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08500 YPD4_RS08505 YPD4_1450 YPD4_RS08505 1869537 1870862 + Fe-S cluster assembly protein SufD gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08505 YPD4_RS08510 YPD4_1451 YPD4_RS08510 1870859 1872079 + cysteine desulfurase gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08510 YPD4_RS08515 YPD4_1452 YPD4_RS08515 1872168 1872590 + cysteine desulfuration protein SufE Acts with SufS to catalyze the formation of L-alanine from L-cysteine gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08515 YPD4_RS08520 YPD4_1453 YPD4_RS08520 1872861 1873880 + murein transpeptidase gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08520 YPD4_RS08525 YPD4_1454 YPD4_RS08525 1873924 1874703 - transposase gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08525 YPD4_RS08530 YPD4_1455 YPD4_RS08530 1874703 1875725 - transposase gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08530 YPD4_RS08535 YPD4_1456 YPD4_RS08535 1876307 1876765 - transposase gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08535 YPD4_RS08540 YPD4_RS08540 YPD4_RS08540 1876755 1876925 - invasin gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08540 YPD4_RS08545 YPD4_RS08545 YPD4_RS08545 1876956 1877192 - hypothetical protein major outer membrane lipoprotein%3B interacts with peptidoglycan to maintain the integrity of the cell envelope gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08545 YPD4_RS08550 YPD4_1457 YPD4_RS08550 1877513 1878925 - pyruvate kinase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08550 YPD4_RS08555 YPD4_t21 YPD4_RS08555 1879501 1879577 - tRNA-Val tRNA gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08555 YPD4_RS08560 YPD4_t22 YPD4_RS08560 1879637 1879713 - tRNA-Val tRNA gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08560 YPD4_RS08565 YPD4_RS08565 YPD4_RS08565 1879956 1881328 - multidrug transporter NorM%3B MdtK%3B functions as a Na(+)/drug antiporter%3B inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08565 YPD4_RS08570 YPD4_1460 YPD4_RS08570 1881577 1882233 + riboflavin synthase subunit alpha catalyzes the formation of riboflavin from 6%2C7-dimethyl-8-(1-D-ribityl)lumazine gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08570 YPD4_RS08575 YPD4_1461 YPD4_RS08575 1882284 1883435 - cyclopropane fatty acyl phospholipid synthase catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08575 YPD4_RS08580 YPD4_1462 YPD4_RS08580 1883915 1885117 - Bcr/CflA family drug resistance efflux transporter uncharacterized member of the major facilitator superfamily (MFS) gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08580 YPD4_RS08585 YPD4_1463 YPD4_RS08585 1885407 1886339 + LysR family transcriptional regulator gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08585 YPD4_RS08590 YPD4_1464 YPD4_RS08590 1886428 1887453 - PurR family transcriptional regulator binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis%3B is involved in regulation of purB%2C purC%2C purEK%2C purHD%2C purL%2C purMN and guaBA expression%3B binds hypoxanthine and guanine as inducers gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08590 YPD4_RS08595 YPD4_1465 YPD4_RS08595 1887980 1888558 - superoxide dismutase SodB%3B iron binding%3B present under aerobic and anaerobic conditions%3B destroys free radicals gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08595 YPD4_RS08600 YPD4_1466 YPD4_RS08600 1888919 1889770 - hydrolase gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08600 YPD4_RS08605 YPD4_RS08605 YPD4_RS08605 1889889 1890110 + hypothetical protein gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08605 YPD4_RS08610 YPD4_1467 YPD4_RS08610 1890210 1890560 + glutaredoxin gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08610 YPD4_RS08615 YPD4_1468 YPD4_RS08615 1890869 1891549 - ribonuclease T Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08615 YPD4_RS08620 YPD4_1469 YPD4_RS08620 1891628 1892035 - lactoylglutathione lyase Ni-dependent%3B catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08620 YPD4_RS08625 YPD4_1470 YPD4_RS08625 1892308 1895262 + toxin gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08625 YPD4_RS08630 YPD4_1471 YPD4_RS08630 1895483 1896580 - N-ethylmaleimide reductase FMN-linked%3B catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08630 YPD4_RS08635 YPD4_1472 YPD4_RS08635 1896668 1897267 - TetR family transcriptional regulator represses nemA which is involved in degradation of N-ethylmaleimide gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08635 YPD4_RS08640 YPD4_1473 YPD4_RS08640 1897490 1899127 - metal dependent hydrolase gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08640 YPD4_RS08645 YPD4_RS08645 YPD4_RS08645 1899301 1899540 + oxidoreductase gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08645 YPD4_RS08650 YPD4_1474 YPD4_RS08650 1899672 1900568 + oxidoreductase gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08650 YPD4_RS08655 YPD4_1475 YPD4_RS08655 1901366 1901797 + SlyA family transcriptional regulator Transcription regulator that can both activate or repress expression gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08655 YPD4_RS08660 YPD4_1476 YPD4_RS08660 1901941 1902408 - lipoprotein gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08660 YPD4_RS08665 YPD4_1477 anmK anmK 1902963 1904075 + anhydro-N-acetylmuramic acid kinase catalyzes hydrolysis of 1%2C6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate%3B involved in murein recycling gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08665 YPD4_RS08670 YPD4_1478 YPD4_RS08670 1904133 1904447 + lipoprotein gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08670 YPD4_RS08675 YPD4_1479 YPD4_RS08675 1904538 1905191 + pyridoxine/pyridoxamine 5'-phosphate oxidase catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08675 YPD4_RS08680 YPD4_1480 YPD4_RS08680 1905373 1906647 + tyrosine--tRNA ligase gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08680 YPD4_RS08685 YPD4_1481 YPD4_RS08685 1906802 1907662 + pyridoxamine kinase catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08685 YPD4_RS08690 YPD4_1482 YPD4_RS08690 1907722 1908327 - glutathionine S-transferase gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08690 YPD4_RS08695 YPD4_RS08695 YPD4_RS08695 1908572 1908835 - hypothetical protein gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08695 YPD4_RS08700 YPD4_1483 YPD4_RS08700 1909081 1909671 - membrane protein gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08700 YPD4_RS08705 YPD4_1484 tppB tppB 1909926 1911431 - dipeptide and tripeptide permease A mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium%3B member of proton-dependent oligopeptide transport (POT) system family%3B in Escherichia coli this gene is regulated by OmpR although not via osmoregulation gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08705 YPD4_RS08710 YPD4_1485 YPD4_RS08710 1912074 1913354 - hypothetical protein gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08710 YPD4_RS08715 YPD4_1486 YPD4_RS08715 1913744 1914559 - peptide ABC transporter ATP-binding protein gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08715 YPD4_RS08720 YPD4_1487 YPD4_RS08720 1914559 1915551 - peptide ABC transporter ATP-binding protein involved in resistance to antimibial peptides gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08720 YPD4_RS08725 YPD4_1488 YPD4_RS08725 1915551 1916441 - peptide ABC transporter permease gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08725 YPD4_RS08730 YPD4_1489 YPD4_RS08730 1916428 1917393 - peptide ABC transporter permease gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08730 YPD4_RS08735 YPD4_1490 YPD4_RS08735 1917390 1919036 - peptide ABC transporter substrate-binding protein gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08735 YPD4_RS08740 YPD4_RS08740 YPD4_RS08740 1919172 1919350 - hypothetical protein gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08740 YPD4_RS08745 YPD4_RS08745 YPD4_RS08745 1919537 1919704 + invasin gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08745 YPD4_RS08750 YPD4_1491 YPD4_RS08750 1919694 1920152 + transposase gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08750 YPD4_RS08755 YPD4_1492 pspF pspF 1920317 1921345 - transcriptional regulator transcriptional activator for pspABCE which are induced in response to phage proteins%2C membrane altering stresses%2C and impaired proton expor gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08755 YPD4_RS08760 YPD4_1493 YPD4_RS08760 1921590 1922255 + phage-shock protein involved in maintaining membrane potential under membrane stress conditions%3B also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08760 YPD4_RS08765 YPD4_RS08765 pspB pspB 1922417 1922644 + phage shock protein B DNA-binding transcriptional regulator%3B acts together with PspC to induce psp operon during infection with phage%2C exposure to ethanol or osmotic shock%3B forms a complex with PspA and C%3B PspC is required for PspAB binding gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08765 YPD4_RS08770 YPD4_1494 YPD4_RS08770 1922644 1923003 + transcriptional regulator with PsbB forms toxin/antitoxin pair%3B activates the psp operon in response to phage infection%2C exposure to ethanol or osmotic shock gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08770 YPD4_RS08775 YPD4_RS08775 YPD4_RS08775 1923091 1923330 + phage-shock protein gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08775 YPD4_RS08780 YPD4_RS08780 YPD4_RS08780 1923311 1924706 + hypothetical protein gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08780 YPD4_RS08785 YPD4_1497 YPD4_RS08785 1924703 1925764 + membrane protein gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08785 YPD4_RS08790 YPD4_1498 YPD4_RS08790 1925774 1926232 - hypothetical protein gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08790 YPD4_RS08795 YPD4_1499 YPD4_RS08795 1926294 1926740 - TIGR02293 family toxin-antitoxin system antitoxin component gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08795 YPD4_RS08800 YPD4_1500 YPD4_RS08800 1927075 1928652 + transcriptional regulator regulates genes involved in the biosynthesis and transport of aromatic amino acids gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08800 YPD4_RS08805 YPD4_1501 YPD4_RS08805 1928799 1929257 - transposase gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08805 YPD4_RS08810 YPD4_1502 tpx tpx 1929510 1930013 - thiol peroxidase antioxidant activity%3B thioredoxin-dependent thiol peroxidase%3B forms homodimers in solution%3B shows substrate specificity to alkyl hydroperoxides%3B periplasmic protein gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08810 YPD4_RS08815 YPD4_1503 YPD4_RS08815 1930264 1931043 - transposase gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08815 YPD4_RS08820 YPD4_1504 YPD4_RS08820 1931043 1932065 - transposase gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08820 YPD4_RS08825 YPD4_RS08825 YPD4_RS08825 1932472 1932862 + RNA-binding protein gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08825 YPD4_RS08830 YPD4_RS08830 YPD4_RS08830 1932972 1933211 - hypothetical protein gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08830 YPD4_RS08835 YPD4_1505 YPD4_RS08835 1933419 1934408 - spore coat protein U gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08835 YPD4_RS08840 YPD4_1506 YPD4_RS08840 1934614 1937061 - outer membrane usher protein gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08840 YPD4_RS08845 YPD4_1507 YPD4_RS08845 1937232 1937984 - molecular chaperone gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08845 YPD4_RS08850 YPD4_RS08850 YPD4_RS08850 1938015 1938572 - spore coat protein U gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08850 YPD4_RS08855 YPD4_1508 YPD4_RS08855 1938593 1939084 - spore coat protein U gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08855 YPD4_RS08860 YPD4_1509 YPD4_RS08860 1939129 1939683 - spore coat protein U gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08860 YPD4_RS08865 YPD4_1510 YPD4_RS08865 1940162 1942813 - hypothetical protein gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08865 YPD4_RS08870 YPD4_1511 YPD4_RS08870 1942782 1944029 - membrane protein gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08870 YPD4_RS08875 YPD4_1512 YPD4_RS08875 1944261 1944758 + diguanylate cyclase gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08875 YPD4_RS08880 YPD4_1513 YPD4_RS08880 1944854 1945567 + RNA chaperone ProQ affects solute and DNA transport through an unknown mechanism gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08880 YPD4_RS08885 YPD4_1514 YPD4_RS08885 1945587 1947659 + carboxyl-terminal processing protease Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08885 YPD4_RS08890 YPD4_1515 YPD4_RS08890 1948133 1949014 + protease HtpX metalloprotease gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08890 YPD4_RS08895 YPD4_1516 YPD4_RS08895 1949672 1950214 + fimbrial protein gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08895 YPD4_RS08900 YPD4_1517 YPD4_RS08900 1950460 1951146 + fimbrial assembly protein StbE gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08900 YPD4_RS08905 YPD4_1518 YPD4_RS08905 1951228 1953840 + outer membrane usher protein gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08905 YPD4_RS08910 YPD4_1519 YPD4_RS08910 1953837 1955000 + fimbrial protein gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08910 YPD4_RS08915 YPD4_1520 YPD4_RS08915 1954997 1955800 + molecular chaperone gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08915 YPD4_RS08920 YPD4_RS08920 YPD4_RS08920 1955854 1957220 - multidrug MFS transporter gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08920 YPD4_RS08925 YPD4_1523 YPD4_RS08925 1957546 1958712 + oligogalacturonate lyase gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08925 YPD4_RS08930 YPD4_1524 YPD4_RS08930 1958899 1959690 + IclR family transcriptional regulator regulates the genes involved in 2-keto-3-deoxy gluconate transport and catabolism gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08930 YPD4_RS08935 YPD4_1525 YPD4_RS08935 1960093 1960944 + N-acetylmuramoyl-L-alanine amidase gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08935 YPD4_RS08940 YPD4_1526 YPD4_RS08940 1961159 1962550 - L-cystine transporter tcyP gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08940 YPD4_RS08945 YPD4_1527 YPD4_RS08945 1962754 1963302 - membrane protein gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08945 YPD4_RS08950 YPD4_1528 YPD4_RS08950 1963782 1964492 - porin gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08950 YPD4_RS08955 YPD4_1529 YPD4_RS08955 1964790 1966082 - sugar ABC transporter substrate-binding protein gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08955 YPD4_RS08960 YPD4_1530 YPD4_RS08960 1966098 1967225 - sugar ABC transporter ATP-binding protein gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08960 YPD4_RS08965 YPD4_1531 YPD4_RS08965 1967239 1968159 - sugar ABC transporter permease gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08965 YPD4_RS08970 YPD4_1532 YPD4_RS08970 1968152 1969042 - sugar ABC transporter permease gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08970 YPD4_RS08975 YPD4_1533 YPD4_RS08975 1969083 1970750 - pectate disaccharide-lyase gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08975 YPD4_RS08980 YPD4_1534 YPD4_RS08980 1971086 1971847 - 2-deoxy-D-gluconate 3-dehydrogenase catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08980 YPD4_RS08985 YPD4_1535 YPD4_RS08985 1971939 1972775 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase%3B catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2%2C5-hexodiulosonate gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08985 YPD4_RS08990 YPD4_1536 YPD4_RS08990 1973111 1973461 + pectin degradation protein kdgF gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08990 YPD4_RS08995 YPD4_1537 YPD4_RS08995 1973509 1974717 + transposase gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS08995 YPD4_RS09000 YPD4_1538 YPD4_RS09000 1975192 1976079 + transcriptional regulator gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09000 YPD4_RS09005 YPD4_1539 YPD4_RS09005 1976093 1977115 + transposase gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09005 YPD4_RS09010 YPD4_1540 YPD4_RS09010 1977115 1977894 + transposase gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09010 YPD4_RS09015 YPD4_RS09015 YPD4_RS09015 1977910 1978167 + ThuR%2C regulatory protein for trehalosemaltose transport gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09015 YPD4_RS09020 YPD4_t23 YPD4_RS09020 1978310 1978385 - tRNA-Asn tRNA gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09020 YPD4_RS09025 YPD4_1541 YPD4_RS09025 1978563 1979375 - protein MtfA Mlc anti-repressor%3B regulates ptsG by binding and inactivating Mlc gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09025 YPD4_RS09030 YPD4_RS09030 YPD4_RS09030 1979765 1980049 - hypothetical protein gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09030 YPD4_RS09035 YPD4_1542 YPD4_RS09035 1980286 1981137 - RIO1 family protein kinase gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09035 YPD4_RS09040 YPD4_1543 YPD4_RS09040 1981240 1982958 - ABC transporter ATP-binding protein gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09040 YPD4_RS09045 YPD4_RS09045 YPD4_RS09045 1983614 1983778 + membrane protein gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09045 YPD4_RS09050 YPD4_1544 YPD4_RS09050 1983860 1984246 - AraC family transcriptional regulator gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09050 YPD4_RS09055 YPD4_RS09055 YPD4_RS09055 1984477 1984590 + membrane protein gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09055 YPD4_RS09060 YPD4_RS09060 YPD4_RS09060 1984802 1985041 + hypothetical protein gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09060 YPD4_RS09065 YPD4_RS09065 YPD4_RS09065 1985132 1985365 - membrane protein gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09065 YPD4_RS09070 YPD4_RS09070 YPD4_RS09070 1985948 1986223 + hypothetical protein gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09070 YPD4_RS09075 YPD4_RS09075 YPD4_RS09075 1986486 1986785 + hypothetical protein gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09075 YPD4_RS09080 YPD4_RS09080 YPD4_RS09080 1986894 1987139 + hypothetical protein gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09080 YPD4_RS09085 YPD4_RS09085 YPD4_RS09085 1987376 1988748 + aromatic amino acid transporter gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09085 YPD4_RS09090 YPD4_1547 YPD4_RS09090 1989053 1989652 - lipid A palmitoyltransferase PagP gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09090 YPD4_RS09095 YPD4_RS09095 YPD4_RS09095 1989667 1989888 + hypothetical protein gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09095 YPD4_RS09100 YPD4_RS09100 YPD4_RS09100 1990657 1990773 + hypothetical protein gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09100 YPD4_RS09105 YPD4_RS09105 YPD4_RS09105 1990816 1991025 + cold-shock protein gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09105 YPD4_RS09110 YPD4_1548 YPD4_RS09110 1991116 1991871 - polyphenol oxidoreductase gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09110 YPD4_RS09115 YPD4_1549 YPD4_RS09115 1992266 1993105 + 23S rRNA methyltransferase gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09115 YPD4_RS09120 YPD4_RS09120 YPD4_RS09120 1993327 1993605 - hypothetical protein gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09120 YPD4_RS09125 YPD4_1550 YPD4_RS09125 1993827 1995908 - diguanylate cyclase gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09125 YPD4_RS09130 YPD4_1551 YPD4_RS09130 1996330 1998543 + TonB-dependent receptor gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09130 YPD4_RS09135 YPD4_1552 YPD4_RS09135 1998704 1999273 - membrane protein membrane protein YebN gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09135 YPD4_RS09140 YPD4_1553 YPD4_RS09140 1999702 2000163 - membrane protein gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09140 YPD4_RS09145 YPD4_1554 YPD4_RS09145 2000363 2001241 - PTS mannose transporter subunit IID hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IID with IIC forms the translocation channel gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09145 YPD4_RS09150 YPD4_1555 YPD4_RS09150 2001257 2002054 - PTS mannose transporter subunit IIC catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09150 YPD4_RS09155 YPD4_1556 YPD4_RS09155 2002146 2003120 - PTS mannose transporter subunit IIAB catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B subunit IIA transfers a phosphoryl group to subunit IIB%3B subunit IIB transfers the phosphoryl group to the substrate gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09155 YPD4_RS09160 YPD4_1557 YPD4_RS09160 2003909 2005285 + membrane protein gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09160 YPD4_RS09165 YPD4_1558 YPD4_RS09165 2005387 2005854 - homoprotocatechuate degradative operon repressor gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09165 YPD4_RS09170 YPD4_1559 YPD4_RS09170 2006238 2006870 + 2-hydroxyhepta-2%2C4-diene-1%2C7-dioate isomerase gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09170 YPD4_RS09175 YPD4_1560 YPD4_RS09175 2006867 2007631 + 2-hydroxyhepta-2%2C4-diene-1%2C7-dioate isomerase gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09175 YPD4_RS09180 YPD4_1561 YPD4_RS09180 2007628 2009025 + betaine-aldehyde dehydrogenase catalyzes the formation of betaine from betaine aldehyde gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09180 YPD4_RS09185 YPD4_1562 YPD4_RS09185 2009144 2010001 + 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09185 YPD4_RS09190 YPD4_1563 YPD4_RS09190 2010026 2010424 + 5-carboxymethyl-2-hydroxymuconate isomerase catalyzes the formation of 5-oxo-pent-3-ene-1%2C2%2C5-tricarboxylic acid from 5-carboxymethyl-2-hydroxy-muconic acid gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09190 YPD4_RS09195 YPD4_1564 YPD4_RS09195 2010418 2011221 + 2-oxo-hept-3-ene-1%2C7-dioate hydratase gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09195 YPD4_RS09200 YPD4_1565 YPD4_RS09200 2011232 2012038 + alpha-dehydro-beta-deoxy-D-glucarate aldolase gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09200 YPD4_RS09205 YPD4_1566 YPD4_RS09205 2012064 2013431 + 4-hydroxyphenylacetate permease gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09205 YPD4_RS09210 YPD4_1567 YPD4_RS09210 2013499 2015061 + 4-hydroxyphenylacetate 3-monooxygenase gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09210 YPD4_RS09215 YPD4_1568 hpaC hpaC 2015082 2015579 + 4-hydroxyphenylacetate 3-monooxygenase catalyzes the reduction of MN%2C FAD and riboflavin by NADH gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09215 YPD4_RS09220 YPD4_1569 YPD4_RS09220 2015859 2017223 - L-serine dehydratase catalyzes the formation of pyruvate from serine gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09220 YPD4_RS09225 YPD4_1570 YPD4_RS09225 2017931 2018530 - NUDIX hydrolase gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09225 YPD4_RS09230 YPD4_1571 pabB pabB 2018527 2019903 - aminodeoxychorismate synthase subunit I para-aminobenzoate synthase component 1%3B catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and L-glutamine gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09230 YPD4_RS09235 YPD4_RS09235 YPD4_RS09235 2020068 2020325 + hypothetical protein gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09235 YPD4_RS09240 YPD4_1572 YPD4_RS09240 2020451 2021632 - phosphoribosylglycinamide formyltransferase 2 gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09240 YPD4_RS09245 YPD4_1573 YPD4_RS09245 2021945 2023327 + RNA helicase exhibits an RNA-dependent ATPase activity%2C specifically stimulated by bacterial 23S rRNA gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09245 YPD4_RS09250 YPD4_1574 YPD4_RS09250 2023421 2023741 + hypothetical protein gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09250 YPD4_RS09255 YPD4_1575 YPD4_RS09255 2023781 2024089 + hypothetical protein gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09255 YPD4_RS09260 YPD4_1576 YPD4_RS09260 2024181 2024606 + hypothetical protein gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09260 YPD4_RS09265 YPD4_1577 YPD4_RS09265 2024916 2026967 + oligopeptidase B PtrB%3B oligopeptidase that cleaves peptide bonds following arginine and lysine residues gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09265 YPD4_RS09270 YPD4_1578 YPD4_RS09270 2027689 2028639 + proline iminopeptidase gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09270 YPD4_RS09275 YPD4_RS09275 YPD4_RS09275 2028699 2028929 - DNA polymerase III subunit theta gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09275 YPD4_RS09280 YPD4_1579 YPD4_RS09280 2029330 2029839 + ferritin cytoplasmic iron storage protein gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09280 YPD4_RS09285 YPD4_1580 YPD4_RS09285 2030236 2030622 + hypothetical protein gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09285 YPD4_RS09290 YPD4_1581 YPD4_RS09290 2030625 2031509 + copper resistance protein D gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09290 YPD4_RS09295 YPD4_1582 YPD4_RS09295 2031606 2031947 + hypothetical protein gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09295 YPD4_RS09300 YPD4_RS09300 YPD4_RS09300 2032227 2032456 + hypothetical protein gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09300 YPD4_RS09305 YPD4_1583 YPD4_RS09305 2032469 2032795 - acyl carrier protein gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09305 YPD4_RS09310 YPD4_1584 YPD4_RS09310 2032789 2033247 - membrane protein gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09310 YPD4_RS09315 YPD4_1585 flhB flhB 2033779 2034939 + flagellar biosynthesis protein FlhB membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09315 YPD4_RS09320 YPD4_1586 YPD4_RS09320 2034939 2037017 + flagellar biosynthesis protein FlhA gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09320 YPD4_RS09325 YPD4_1587 YPD4_RS09325 2037017 2037439 + flagellar biosynthesis protein FlhE gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09325 YPD4_RS09330 YPD4_1588 YPD4_RS09330 2038103 2039107 + invasin gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09330 YPD4_RS09335 YPD4_1589 YPD4_RS09335 2039097 2039555 + transposase gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09335 YPD4_RS09340 YPD4_1590 YPD4_RS09340 2039645 2041717 + hypothetical protein gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09340 YPD4_RS09345 YPD4_1591 YPD4_RS09345 2041907 2042347 - flagellar synthesis protein FlgN export chaperone for FlgK and FlgL gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09345 YPD4_RS09350 YPD4_1592 YPD4_RS09350 2042366 2042668 - flagellar biosynthesis protein FlgM regulates the flagellar specific sigma28 transcription factor gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09350 YPD4_RS09355 YPD4_1593 YPD4_RS09355 2042819 2043517 - flagellar basal body P-ring biosynthesis protein FlgA gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09355 YPD4_RS09360 YPD4_1594 YPD4_RS09360 2043756 2044169 + flagellar biosynthesis protein FlgB gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09360 YPD4_RS09365 YPD4_1595 flgC flgC 2044175 2044579 + flagellar basal body rod protein FlgC with FlgF and B makes up the proximal portion of the flagellar basal body rod gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09365 YPD4_RS09370 YPD4_1596 flgD flgD 2044594 2045271 + flagellar basal body rod modification protein acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of some flagellar genes%3B in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09370 YPD4_RS09375 YPD4_1597 flgE flgE 2045473 2046759 + flagellar hook protein FlgE the hook connects flagellar basal body to the flagellar filament gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09375 YPD4_RS09380 YPD4_1598 flgF flgF 2046781 2047410 + flagellar basal body rod protein FlgF FlgF%2C with FlgB and C%2C makes up the proximal portion of the flagellar basal body rod gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09380 YPD4_RS09385 YPD4_1599 flgG flgG 2047364 2048089 + flagellar biosynthesis protein FlgG makes up the distal portion of the flagellar basal body rod gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09385 YPD4_RS09390 YPD4_1600 YPD4_RS09390 2048191 2048922 + flagellar basal body L-ring protein gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09390 YPD4_RS09395 YPD4_1601 flgI flgI 2048937 2050046 + flagellar basal body P-ring protein part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B Vibrio parahaemolyticus%2C Yersinia%2C Bradyrhizobium and other bacteria have two copies of this and other flagellar genes%3B the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09395 YPD4_RS09400 YPD4_1602 flgJ flgJ 2050046 2050990 + flagellar rod assembly protein FlgJ Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09400 YPD4_RS09405 YPD4_1603 flgK flgK 2052004 2053668 + flagellar hook protein FlgK with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09405 YPD4_RS09410 YPD4_1604 flgL flgL 2053807 2054787 + flagellar hook-associated protein FlgL with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09410 YPD4_RS09415 YPD4_1605 YPD4_RS09415 2054816 2055817 - DNA-binding transcriptional regulator gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09415 YPD4_RS09420 YPD4_1606 YPD4_RS09420 2056035 2058101 + short-chain dehydrogenase gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09420 YPD4_RS09425 YPD4_1607 YPD4_RS09425 2058231 2059310 + sugar ABC transporter permease gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09425 YPD4_RS09430 YPD4_1608 YPD4_RS09430 2059353 2060348 + LacI family transcriptional regulator gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09430 YPD4_RS09435 YPD4_1609 YPD4_RS09435 2060414 2061991 + sugar ABC transporter ATP-binding protein gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09435 YPD4_RS09440 YPD4_1610 YPD4_RS09440 2061994 2063016 + sugar ABC transporter permease gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09440 YPD4_RS09445 YPD4_1611 YPD4_RS09445 2063065 2064024 + kinase pfkB family gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09445 YPD4_RS09450 YPD4_1612 YPD4_RS09450 2064282 2064701 - hypothetical protein gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09450 YPD4_RS09455 YPD4_RS09455 YPD4_RS09455 2064746 2064928 - hypothetical protein gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09455 YPD4_RS09460 YPD4_1613 fliR fliR 2065135 2065917 - flagellar biosynthesis protein FliR FliR%2C with proteins FliP and FliQ%2C forms the core of the central channel in the flagella export apparatus gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09460 YPD4_RS09465 YPD4_RS09465 fliQ fliQ 2065920 2066189 - flagellar biosynthesis protein FliQ with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09465 YPD4_RS09470 YPD4_1614 fliP fliP 2066295 2067035 - flagellar biosynthesis protein FliP FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09470 YPD4_RS09475 YPD4_1615 YPD4_RS09475 2067116 2067652 - flagellar biosynthesis protein gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09475 YPD4_RS09480 YPD4_1616 fliN fliN 2067652 2068068 - flagellar motor switch protein FliN One of three proteins involved in switching the direction of the flagellar rotation gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09480 YPD4_RS09485 YPD4_1617 fliM fliM 2068065 2069066 - flagellar motor switch protein FliM with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09485 YPD4_RS09490 YPD4_1618 fliL fliL 2069072 2069542 - flagellar basal body protein FliL interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09490 YPD4_RS09495 YPD4_1619 YPD4_RS09495 2069809 2071161 - flagellar hook-length control protein FliK gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09495 YPD4_RS09500 YPD4_1620 fliJ fliJ 2071158 2071604 - flagellar biosynthesis chaperone rod/hook and filament chaperone gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09500 YPD4_RS09505 YPD4_RS09505 fliI fliI 2071704 2073159 - ATP synthase involved in type III protein export during flagellum assembly gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09505 YPD4_RS09510 YPD4_1623 fliH fliH 2073122 2073838 - flagellar assembly protein H binds to and inhibits the function of flagella specific ATPase FliI gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09510 YPD4_RS09515 YPD4_1624 fliG fliG 2073831 2074823 - flagellar motor switch protein FliG One of three proteins involved in switching the direction of the flagellar rotation gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09515 YPD4_RS09520 YPD4_1625 YPD4_RS09520 2074820 2076532 - flagellar M-ring protein FliF gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09520 YPD4_RS09525 YPD4_1626 YPD4_RS09525 2076885 2077196 + flagellar hook-basal body complex protein FliE gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09525 YPD4_RS09530 YPD4_RS09530 YPD4_RS09530 2077616 2077795 + hypothetical protein gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09530 YPD4_RS09535 YPD4_RS09535 YPD4_RS09535 2077806 2078282 + death-on-curing family protein gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09535 YPD4_RS09540 YPD4_1627 YPD4_RS09540 2078468 2079079 - DNA-3-methyladenine glycosidase gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09540 YPD4_RS09545 YPD4_1628 YPD4_RS09545 2079240 2080145 - chemotaxis protein gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09545 YPD4_RS09550 YPD4_1629 YPD4_RS09550 2080282 2082195 - histidine kinase gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09550 YPD4_RS09555 YPD4_1630 YPD4_RS09555 2082549 2083424 - AraC family transcriptional regulator gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09555 YPD4_RS09560 YPD4_RS09560 YPD4_RS09560 2083431 2083670 - membrane protein gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09560 YPD4_RS09565 YPD4_RS09565 YPD4_RS09565 2083725 2084087 - flagellar protein FliT gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09565 YPD4_RS09570 YPD4_1631 fliS fliS 2084098 2084496 - flagellar export chaperone FliS flagellin specific chaperone gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09570 YPD4_RS09575 YPD4_1632 YPD4_RS09575 2084507 2085907 - flagellar cap protein FliD gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09575 YPD4_RS09580 YPD4_1633 YPD4_RS09580 2086204 2087313 + flagellin structural flagella protein gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09580 YPD4_RS09585 YPD4_1634 fliA fliA 2087660 2088382 + flagellar biosynthesis sigma factor sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor directs late flagellar biosynthesis genes gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09585 YPD4_RS09590 YPD4_1635 YPD4_RS09590 2088604 2089113 + flagellar biosynthesis protein FliZ gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09590 YPD4_RS09595 YPD4_1636 YPD4_RS09595 2089402 2090394 + D-cysteine desulfhydrase gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09595 YPD4_RS09600 YPD4_1637 YPD4_RS09600 2090518 2091318 + cystine transporter subunit gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09600 YPD4_RS09605 YPD4_1638 YPD4_RS09605 2091318 2091980 + amino acid ABC transporter permease gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09605 YPD4_RS09610 YPD4_1639 YPD4_RS09610 2091983 2092744 + amino acid ABC transporter ATP-binding protein gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09610 YPD4_RS09615 YPD4_1640 YPD4_RS09615 2093036 2093374 - transcriptional regulator gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09615 YPD4_RS09620 YPD4_RS09620 YPD4_RS09620 2093408 2093701 - hypothetical protein gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09620 YPD4_RS09625 YPD4_1641 putA putA 2094206 2098177 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase proline utilization protein A%3B multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate%3B in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus%3B forms dimers and is a peripherally membrane-associated protein gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09625 YPD4_RS09630 YPD4_RS09630 YPD4_RS09630 2098522 2098719 + membrane protein gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09630 YPD4_RS09635 YPD4_1642 YPD4_RS09635 2098749 2100233 + proline:sodium symporter involved in the sodium dependent uptake of proline gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09635 YPD4_RS09640 YPD4_1643 YPD4_RS09640 2100566 2101414 + ferrous iron permease EfeU gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09640 YPD4_RS09645 YPD4_1644 YPD4_RS09645 2101444 2102574 + iron uptake system component EfeO with EfeUB forms an iron transport system which is silent in E. coli K-12 due to a mutation in EfeU gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09645 YPD4_RS09650 YPD4_1645 YPD4_RS09650 2102585 2103889 + deferrochelatase/peroxidase EfeB gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09650 YPD4_RS09655 YPD4_1646 YPD4_RS09655 2103975 2104574 - NAD(P)H dehydrogenase (quinone) catalyzes the transfer of electrons from NADH to ubiquinone gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09655 YPD4_RS09660 YPD4_1647 YPD4_RS09660 2104968 2106146 + N-acetylneuraminate epimerase gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09660 YPD4_RS09665 YPD4_1648 YPD4_RS09665 2106272 2107696 - alanine glycine permease gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09665 YPD4_RS09670 YPD4_t24 YPD4_RS09670 2108049 2108124 + tRNA-Lys tRNA gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09670 YPD4_RS09675 YPD4_1649 YPD4_RS09675 2108811 2109362 + attachment invasion locus protein gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09675 YPD4_RS09680 YPD4_RS09680 YPD4_RS09680 2109401 2109583 - hypothetical protein gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09680 YPD4_RS09685 YPD4_RS09685 YPD4_RS09685 2109702 2109956 + membrane protein gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09685 YPD4_RS09690 YPD4_1650 YPD4_RS09690 2109984 2110325 - membrane protein gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09690 YPD4_RS09695 YPD4_RS09695 YPD4_RS09695 2110453 2110677 - hypothetical protein gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09695 YPD4_RS09700 YPD4_1651 sirA sirA 2111340 2111996 + transcriptional regulator in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system%3B in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09700 YPD4_RS09705 YPD4_1652 uvrC uvrC 2111989 2113821 + UvrABC system protein C The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09705 YPD4_RS09710 YPD4_1653 YPD4_RS09710 2113880 2114428 + CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09710 YPD4_RS09715 YPD4_t25 YPD4_RS09715 2114573 2114648 + tRNA-Gly tRNA gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09715 YPD4_RS09720 YPD4_t26 YPD4_RS09720 2114701 2114774 + tRNA-Cys tRNA gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09720 YPD4_RS09725 YPD4_t27 YPD4_RS09725 2114785 2114870 + tRNA-Leu tRNA gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09725 YPD4_RS09730 YPD4_RS09730 YPD4_RS09730 2115168 2115683 - integrase gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09730 YPD4_RS09735 YPD4_RS09735 YPD4_RS09735 2115794 2116021 + replicative DNA helicase gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09735 YPD4_RS09740 YPD4_RS09740 YPD4_RS09740 2116414 2116536 + hypothetical protein gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09740 YPD4_RS09745 YPD4_RS09745 YPD4_RS09745 2117146 2117328 + membrane protein gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09745 YPD4_RS09750 YPD4_RS09750 YPD4_RS09750 2117358 2117546 - hypothetical protein gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09750 YPD4_RS09755 YPD4_1654 YPD4_RS09755 2117572 2117916 - hypothetical protein gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09755 YPD4_RS09760 YPD4_1655 YPD4_RS09760 2118136 2119095 - transposase gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09760 YPD4_RS09765 YPD4_1656 YPD4_RS09765 2119167 2119649 - transcriptional regulator gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09765 YPD4_RS09770 YPD4_RS09770 YPD4_RS09770 2119697 2119837 - hypothetical protein gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09770 YPD4_RS09775 YPD4_RS09775 YPD4_RS09775 2120002 2120280 - membrane protein gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09775 YPD4_RS09780 YPD4_1657 YPD4_RS09780 2120261 2120566 - hypothetical protein gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09780 YPD4_RS09785 YPD4_RS09785 YPD4_RS09785 2120563 2120778 - membrane protein gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09785 YPD4_RS09790 YPD4_RS09790 YPD4_RS09790 2121213 2121500 - hypothetical protein gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09790 YPD4_RS09795 YPD4_RS09795 YPD4_RS09795 2121517 2121816 - lysozyme gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09795 YPD4_RS09800 YPD4_RS09800 YPD4_RS09800 2121813 2122067 - phage baseplate protein gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09800 YPD4_RS09805 YPD4_RS09805 YPD4_RS09805 2122203 2122475 + toxin gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09805 YPD4_RS09810 YPD4_RS09810 YPD4_RS09810 2122456 2122746 + antitoxin gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09810 YPD4_RS09815 YPD4_1658 YPD4_RS09815 2122812 2123888 + hypothetical protein gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09815 YPD4_RS09820 YPD4_RS09820 YPD4_RS09820 2123936 2125134 + transposase gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09820 YPD4_RS09825 YPD4_1661 YPD4_RS09825 2125552 2126121 - hypothetical protein gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09825 YPD4_RS09830 YPD4_RS09830 YPD4_RS09830 2126133 2126567 - hypothetical protein gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09830 YPD4_RS09835 YPD4_RS09835 YPD4_RS09835 2127245 2127349 + transposase gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09835 YPD4_RS09840 YPD4_1663 YPD4_RS09840 2127536 2128333 + GntR family transcriptional regulator gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09840 YPD4_RS09845 YPD4_RS09845 YPD4_RS09845 2128303 2128593 - transcriptional regulator gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09845 YPD4_RS09850 YPD4_1664 YPD4_RS09850 2129001 2130014 + oxidoreductase gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09850 YPD4_RS09855 YPD4_1665 YPD4_RS09855 2130044 2131312 + sugar ABC transporter substrate-binding protein gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09855 YPD4_RS09860 YPD4_1666 YPD4_RS09860 2131379 2132239 + sugar ABC transporter permease gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09860 YPD4_RS09865 YPD4_1667 YPD4_RS09865 2132232 2133059 + sugar ABC transporter permease gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09865 YPD4_RS09870 YPD4_1668 YPD4_RS09870 2133084 2133974 + sugar ABC transporter ATP-binding protein gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09870 YPD4_RS09875 YPD4_RS09875 YPD4_RS09875 2134049 2134200 + sugar ABC transporter ATPase gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09875 YPD4_RS09880 YPD4_RS09880 YPD4_RS09880 2134210 2134434 - hypothetical protein gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09880 YPD4_RS09885 YPD4_RS09885 YPD4_RS09885 2134450 2134635 - hypothetical protein gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09885 YPD4_RS09890 YPD4_RS09890 YPD4_RS09890 2134723 2134845 + hypothetical protein gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09890 YPD4_RS09895 YPD4_RS09895 YPD4_RS09895 2134829 2135056 - hypothetical protein gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09895 YPD4_RS09900 YPD4_1669 YPD4_RS09900 2135113 2136135 + transposase gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09900 YPD4_RS09905 YPD4_1670 YPD4_RS09905 2136135 2136914 + transposase gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09905 YPD4_RS09910 YPD4_RS09910 YPD4_RS09910 2136958 2137071 - hypothetical protein gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09910 YPD4_RS09920 YPD4_1671 YPD4_RS09920 2137513 2138094 - hypothetical protein gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09920 YPD4_RS09925 YPD4_RS09925 YPD4_RS09925 2138100 2138261 - hypothetical protein gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09925 YPD4_RS09930 YPD4_RS09930 YPD4_RS09930 2138283 2138468 - transcriptional regulator gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09930 YPD4_RS09935 YPD4_1672 YPD4_RS09935 2138608 2139042 - hypothetical protein gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09935 YPD4_RS09940 YPD4_RS09940 YPD4_RS09940 2139185 2139535 - hypothetical protein gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09940 YPD4_RS09945 YPD4_1673 YPD4_RS09945 2140408 2142429 - pesticin receptor gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09945 YPD4_RS09950 YPD4_1674 YPD4_RS09950 2142560 2144137 - salicyl-AMP ligase gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09950 YPD4_RS09955 YPD4_1675 YPD4_RS09955 2144141 2144944 - thioesterase gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09955 YPD4_RS09960 YPD4_1676 YPD4_RS09960 2144941 2146041 - oxidoreductase gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09960 YPD4_RS09965 YPD4_1677 YPD4_RS09965 2146038 2155529 - polyketide synthase gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09965 YPD4_RS09970 YPD4_1678 YPD4_RS09970 2155617 2161724 - non-ribosomal peptide synthetase gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09970 YPD4_RS09975 YPD4_1679 YPD4_RS09975 2161915 2162874 - AraC family transcriptional regulator gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09975 YPD4_RS09980 YPD4_1680 YPD4_RS09980 2163131 2164843 + ABC transporter ATP-binding protein gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09980 YPD4_RS09985 YPD4_1681 YPD4_RS09985 2164830 2166632 + ABC transporter permease gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09985 YPD4_RS09990 YPD4_1682 YPD4_RS09990 2166625 2167905 + signal transducer gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09990 YPD4_RS09995 YPD4_1683 YPD4_RS09995 2167933 2169237 + salicylate synthase catalyzes the conversion of chorismate to salicylate in the biosynthesis of the siderophore yersiniabactin gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS09995 YPD4_RS10000 YPD4_1684 YPD4_RS10000 2169431 2170693 - integrase gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10000 YPD4_RS10005 YPD4_t28 YPD4_RS10005 2170855 2170930 - tRNA-Asn tRNA gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10005 YPD4_RS10010 YPD4_1685 YPD4_RS10010 2171233 2171973 - pilus assembly protein gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10010 YPD4_RS10015 YPD4_RS10015 YPD4_RS10015 2171970 2173318 - hypothetical protein gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10015 YPD4_RS10020 YPD4_1688 YPD4_RS10020 2173334 2175898 - ferrous iron transporter B gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10020 YPD4_RS10025 YPD4_1689 YPD4_RS10025 2175974 2176618 - pilus assembly protein gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10025 YPD4_RS10030 YPD4_1690 YPD4_RS10030 2176711 2177241 - fimbrial protein gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10030 YPD4_RS10035 YPD4_1691 YPD4_RS10035 2177754 2181482 - histidine protein kinase gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10035 YPD4_RS10040 YPD4_1692 YPD4_RS10040 2181580 2182212 - LuxR family transcriptional regulator gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10040 YPD4_RS10045 YPD4_1693 YPD4_RS10045 2183038 2184360 - 4-hydroxybutyrate CoA-transferase gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10045 YPD4_RS10050 YPD4_1694 YPD4_RS10050 2184383 2184910 - molybdenum cofactor biosynthesis protein MoeC gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10050 YPD4_RS10055 YPD4_1695 YPD4_RS10055 2184975 2185817 - citrate lyase subunit beta gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10055 YPD4_RS10060 YPD4_1696 YPD4_RS10060 2185912 2186790 + LysR family transcriptional regulator gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10060 YPD4_RS10065 YPD4_1697 YPD4_RS10065 2186865 2187338 - lipoprotein gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10065 YPD4_RS10070 YPD4_1698 YPD4_RS10070 2187363 2187923 - hypothetical protein gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10070 YPD4_RS10075 YPD4_1699 YPD4_RS10075 2188143 2189372 - sugar transporter gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10075 YPD4_RS10080 YPD4_1700 YPD4_RS10080 2189438 2190307 - GntR family transcriptional regulator gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10080 YPD4_RS10085 YPD4_1701 YPD4_RS10085 2190419 2191381 + LysR family transcriptional regulator gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10085 YPD4_RS10090 YPD4_1702 YPD4_RS10090 2191686 2192285 - Na+-translocating NADH-quinone reductase subunit E Part of the NQR complex which consists of NqrA%2C NqrB%2C NqrC%2C NqrD%2C NqrE and NqrF%3B NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm%3B NqrE is probably involved in the second step%2C the conversion of ubisemiquinone to ubiquinol. gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10090 YPD4_RS10095 YPD4_1703 YPD4_RS10095 2192637 2193797 + aminotransferase gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10095 YPD4_RS10100 YPD4_1704 YPD4_RS10100 2193993 2195522 - L-asparagine permease involved in the transporte of L-asparagine gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10100 YPD4_RS10105 YPD4_1705 YPD4_RS10105 2196244 2197014 - DeoR family transcriptional regulator gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10105 YPD4_RS10110 YPD4_RS10110 YPD4_RS10110 2197567 2197773 + hydroxypyruvate isomerase gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10110 YPD4_RS10115 YPD4_1706 YPD4_RS10115 2198225 2199232 + glutaminase catalyzes the formation of glutamate from glutamine gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10115 YPD4_RS10120 YPD4_1707 YPD4_RS10120 2199343 2200983 + MFS transporter gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10120 YPD4_RS10125 YPD4_1708 YPD4_RS10125 2201564 2203483 + iron permease gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10125 YPD4_RS10130 YPD4_1709 YPD4_RS10130 2203687 2204214 + iron transporter gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10130 YPD4_RS10135 YPD4_1710 YPD4_RS10135 2204515 2205924 + membrane protein gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10135 YPD4_RS10140 YPD4_1711 YPD4_RS10140 2205927 2207219 + ABC transporter permease gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10140 YPD4_RS10145 YPD4_1712 YPD4_RS10145 2207209 2208372 + ABC transporter permease gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10145 YPD4_RS10150 YPD4_1713 YPD4_RS10150 2208376 2209089 + ABC transporter ATP-binding protein gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10150 YPD4_RS10155 YPD4_1714 YPD4_RS10155 2209079 2209576 + thioredoxin gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10155 YPD4_RS10160 YPD4_1715 YPD4_RS10160 2209576 2209887 + cytochrome gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10160 YPD4_RS10165 YPD4_1716 YPD4_RS10165 2210060 2210947 + tellurite resistance methyltransferase TehB with TehA confers resistance to tellurite gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10165 YPD4_RS10170 YPD4_1717 YPD4_RS10170 2211088 2212305 + endopeptidase gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10170 YPD4_RS10175 YPD4_1718 hmsH hmsH 2212974 2215442 + biofilm PGA synthesis protein pgaA in Yersinia this protein is important for biofilm formation and hemin adsorption gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10175 YPD4_RS10180 YPD4_1719 pgaB pgaB 2215455 2217476 + biofilm PGA synthesis lipoprotein PgaB in Yersinia this protein is involved in biofilm formation and hemin adsorption%3B related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1%2C6-N-acetyl-D-glucosamine (PGA) export gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10180 YPD4_RS10185 YPD4_1720 YPD4_RS10185 2217466 2218800 + N-glycosyltransferase predicted polysaccharide polymerase involved in biofilm formation%3B required for the synthesis of the beta-1%2C6-N-acetylglucosamine polysaccharide%3B PgaC%3B in Yersinia the HmsR protein is an inner membrane protein gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10185 YPD4_RS10190 YPD4_1721 hmsS hmsS 2218797 2219264 + poly-beta-1%2C6-N-acetyl-D-glucosamine biosynthesis protein PgaD in Yersinia this gene is involved in biofilm formation and hemin adsorption gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10190 YPD4_RS10195 YPD4_1722 YPD4_RS10195 2219786 2220496 + acetyltransferase gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10195 YPD4_RS10200 YPD4_RS10200 YPD4_RS10200 2220935 2221213 + hypothetical protein gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10200 YPD4_RS10205 YPD4_1723 YPD4_RS10205 2221273 2222061 + hypothetical protein gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10205 YPD4_RS10210 YPD4_1724 YPD4_RS10210 2222164 2223264 - sodium:proton antiporter gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10210 YPD4_RS10215 YPD4_1725 YPD4_RS10215 2223813 2225594 - nitrate/nitrite two-component system sensor histidine kinase gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10215 YPD4_RS10220 YPD4_1726 YPD4_RS10220 2225904 2227325 + GntR family transcriptional regulator gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10220 YPD4_RS10225 YPD4_RS10225 YPD4_RS10225 2227627 2227770 + membrane protein gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10225 YPD4_RS10230 YPD4_1727 YPD4_RS10230 2227968 2229212 + succinylornithine aminotransferase catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate%3B also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10230 YPD4_RS10235 YPD4_1728 YPD4_RS10235 2229242 2230294 + arginine N-succinyltransferase gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10235 YPD4_RS10240 YPD4_1729 astD astD 2230291 2231808 + N-succinylglutamate 5-semialdehyde dehydrogenase a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity%3B converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10240 YPD4_RS10245 YPD4_1730 YPD4_RS10245 2231832 2233175 + N-succinylarginine dihydrolase gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10245 YPD4_RS10250 YPD4_1731 YPD4_RS10250 2233236 2234228 + succinylglutamate desuccinylase gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10250 YPD4_RS10255 YPD4_1732 YPD4_RS10255 2234964 2235911 + porin gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10255 YPD4_RS10260 YPD4_RS10260 YPD4_RS10260 2236483 2236948 + transposase gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10260 YPD4_RS10265 YPD4_1734 YPD4_RS10265 2236948 2237727 + transposase gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10265 YPD4_RS10270 YPD4_1735 YPD4_RS10270 2238288 2239094 - N-formylglutamate deformylase gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10270 YPD4_RS10275 YPD4_1736 YPD4_RS10275 2239091 2240311 - imidazolonepropionase catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate%2C the third step in the histidine degradation pathway gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10275 YPD4_RS10280 YPD4_1737 YPD4_RS10280 2240515 2241282 - histidine utilization repressor gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10280 YPD4_RS10285 YPD4_1738 YPD4_RS10285 2241430 2242800 + N-formimino-L-glutamate deiminase catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10285 YPD4_RS10290 YPD4_1739 YPD4_RS10290 2242800 2243372 + cold inducible protein Ves gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10290 YPD4_RS10295 YPD4_1740 YPD4_RS10295 2243550 2245154 - chorismate-binding enzyme domain protein gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10295 YPD4_RS10300 YPD4_1741 YPD4_RS10300 2246193 2246702 + thiolase gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10300 YPD4_RS10305 YPD4_1742 YPD4_RS10305 2246671 2247201 + 3-oxoacyl-ACP synthase gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10305 YPD4_RS10310 YPD4_1743 YPD4_RS10310 2247215 2248231 + dehydrogenase gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10310 YPD4_RS10315 YPD4_1744 YPD4_RS10315 2248224 2249030 + MBL fold hydrolase gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10315 YPD4_RS10320 YPD4_1745 YPD4_RS10320 2249027 2250313 + coenzyme F390 synthetase gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10320 YPD4_RS10325 YPD4_1746 YPD4_RS10325 2250447 2251409 + dehydrogenase gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10325 YPD4_RS10330 YPD4_1747 YPD4_RS10330 2251409 2252563 + glycosyl transferase gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10330 YPD4_RS10335 YPD4_1748 YPD4_RS10335 2252560 2253144 + hypothetical protein gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10335 YPD4_RS10340 YPD4_1749 YPD4_RS10340 2253141 2254328 + glycosyl transferase gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10340 YPD4_RS10345 YPD4_1750 YPD4_RS10345 2254489 2254953 - hypothetical protein gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10345 YPD4_RS10350 YPD4_1751 YPD4_RS10350 2255123 2256781 - hypothetical protein gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10350 YPD4_RS10355 YPD4_1752 YPD4_RS10355 2256900 2258108 + transposase gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10355 YPD4_RS10360 YPD4_1753 YPD4_RS10360 2258228 2260390 - hypothetical protein gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10360 YPD4_RS10365 YPD4_1754 YPD4_RS10365 2260968 2263079 + membrane protein gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10365 YPD4_RS10370 YPD4_RS10370 YPD4_RS10370 2263082 2263270 - hypothetical protein gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10370 YPD4_RS10375 YPD4_RS10375 YPD4_RS10375 2263326 2263963 + hypothetical protein gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10375 YPD4_RS10380 YPD4_1756 YPD4_RS10380 2264098 2264757 - methyltransferase gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10380 YPD4_RS10385 YPD4_1757 YPD4_RS10385 2264862 2265541 - dehydrogenase gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10385 YPD4_RS10390 YPD4_1758 YPD4_RS10390 2265882 2266832 - hypothetical protein gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10390 YPD4_RS10395 YPD4_1759 YPD4_RS10395 2266819 2267751 - hypothetical protein gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10395 YPD4_RS10400 YPD4_1760 YPD4_RS10400 2267757 2268662 - hypothetical protein gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10400 YPD4_RS10405 YPD4_1761 YPD4_RS10405 2269453 2270526 - alpha/beta hydrolase gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10405 YPD4_RS10410 YPD4_1762 YPD4_RS10410 2270739 2271209 - cupin gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10410 YPD4_RS10415 YPD4_1763 YPD4_RS10415 2271264 2271686 - cytochrome D ubiquinol oxidase subunit II gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10415 YPD4_RS10420 YPD4_1764 YPD4_RS10420 2271963 2273348 - two-component system sensor histidine kinase gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10420 YPD4_RS10425 YPD4_1765 YPD4_RS10425 2273360 2274052 - two-component system response regulator response regulator in two-component regulatory system with CusS%3B regulates the copper efflux system gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10425 YPD4_RS10430 YPD4_1766 YPD4_RS10430 2274317 2275408 + hypothetical protein gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10430 YPD4_RS10435 YPD4_1767 YPD4_RS10435 2275599 2276264 + flavodoxin An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10435 YPD4_RS10440 YPD4_1768 YPD4_RS10440 2276279 2276974 + membrane protein gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10440 YPD4_RS10445 YPD4_1769 YPD4_RS10445 2277183 2278025 - hypothetical protein gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10445 YPD4_RS10450 YPD4_1770 YPD4_RS10450 2278656 2279312 + hypothetical protein gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10450 YPD4_RS10455 YPD4_1771 YPD4_RS10455 2279309 2280139 + esterase gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10455 YPD4_RS10460 YPD4_1772 YPD4_RS10460 2280147 2280545 + rhodanese gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10460 YPD4_RS10465 YPD4_RS10465 YPD4_RS10465 2280593 2281102 - integrase gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10465 YPD4_RS10470 YPD4_RS10470 YPD4_RS10470 2281120 2281308 - transposase gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10470 YPD4_RS10475 YPD4_1774 ychF ychF 2281731 2282822 - GTP-binding protein EngD%3B translation-associated GTPase%3B the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3)%3B fluorescence spectroscopy revealed nucleic acid binding%3B the yeast protein YBR025c interacts with the translation elongation factor eEF1 gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10475 YPD4_RS10480 YPD4_1775 YPD4_RS10480 2282986 2283575 - peptidyl-tRNA hydrolase gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10480 YPD4_RS10485 YPD4_RS10485 YPD4_RS10485 2283937 2284209 + membrane protein YchH%3B transcription activated by CRP (cyclic AMP receptor protein)%2C a global transcription factor involved in regulation of metabolism in enteric bacteria%3B ychH presents a class II promoter to bind CRP%3B unknown function gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10485 YPD4_RS10490 YPD4_RS10490 YPD4_RS10490 2284200 2284313 - hypothetical protein gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10490 YPD4_RS10495 YPD4_1776 YPD4_RS10495 2284411 2285358 - ribose-phosphate pyrophosphokinase catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10495 YPD4_RS10500 YPD4_RS10500 YPD4_RS10500 2285408 2285518 - hypothetical protein gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10500 YPD4_RS10505 YPD4_1777 YPD4_RS10505 2285699 2286598 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10505 YPD4_RS10510 YPD4_1778 YPD4_RS10510 2286600 2287223 - outer membrane lipoprotein LolB gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10510 YPD4_RS10515 YPD4_1779 hemA hemA 2287529 2288791 + glutamyl-tRNA reductase catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH%3B the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid%3B functions in porphyrin (tetrapyrroles) biosynthesis%3B the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10515 YPD4_RS10520 YPD4_1780 prfA prfA 2288824 2289906 + peptide chain release factor 1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1%3B this protein is similar to release factor 2 gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10520 YPD4_RS10525 YPD4_1781 YPD4_RS10525 2289906 2290736 + release factor glutamine methyltransferase HemK%3B PrmC%3B transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10525 YPD4_RS10530 YPD4_1782 YPD4_RS10530 2290800 2291201 + siroheme synthase gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10530 YPD4_RS10535 YPD4_1783 YPD4_RS10535 2291198 2292007 + transcriptional regulator gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10535 YPD4_RS10540 YPD4_1784 YPD4_RS10540 2292103 2292957 + 2-dehydro-3-deoxyphosphooctonate aldolase catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10540 YPD4_RS10545 YPD4_RS10545 YPD4_RS10545 2293311 2295009 - transporter role in sulfate transport across the inner membrane%3B member of the SulP family of sulfate transporters%3B seems to mediate transport via sulfate/proton symport gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10545 YPD4_RS10550 YPD4_RS10550 YPD4_RS10550 2295248 2295544 - hypothetical protein gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10550 YPD4_RS10555 YPD4_t29 YPD4_RS10555 2295845 2295934 - tRNA-Ser tRNA gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10555 YPD4_RS10560 YPD4_1787 YPD4_RS10560 2296076 2296951 - glycerophosphodiester phosphodiesterase gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10560 YPD4_RS10565 YPD4_1788 YPD4_RS10565 2297252 2298334 - LysR family transcriptional regulator gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10565 YPD4_RS10570 YPD4_1789 YPD4_RS10570 2298354 2299190 - spermidine/putrescine ABC transporter permease gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10570 YPD4_RS10575 YPD4_1790 YPD4_RS10575 2299187 2300053 - spermidine/putrescine ABC transporter permease gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10575 YPD4_RS10580 YPD4_1791 YPD4_RS10580 2300050 2300787 - ABC transporter gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10580 YPD4_RS10585 YPD4_1792 YPD4_RS10585 2300955 2301413 + transposase gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10585 YPD4_RS10590 YPD4_1793 YPD4_RS10590 2301501 2301827 - ABC transporter ATP-binding protein gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10590 YPD4_RS10595 YPD4_1794 YPD4_RS10595 2302042 2302872 + glycerophosphoryl diester phosphodiesterase gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10595 YPD4_RS10600 YPD4_1795 YPD4_RS10600 2302886 2303998 + transcriptional regulator gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10600 YPD4_RS10605 YPD4_t30 YPD4_RS10605 2304255 2304344 - tRNA-Ser tRNA gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10605 YPD4_RS10610 YPD4_1796 YPD4_RS10610 2304633 2305370 + hydrolase gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10610 YPD4_RS10615 YPD4_1797 YPD4_RS10615 2305407 2305967 + molecular chaperone gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10615 YPD4_RS10620 YPD4_1798 YPD4_RS10620 2306421 2306984 - lipoprotein gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10620 YPD4_RS10625 YPD4_1799 YPD4_RS10625 2307379 2308584 - multidrug resistance protein MdtH Confers resistance to norfloxacin and enoxacin gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10625 YPD4_RS10630 YPD4_RS10630 YPD4_RS10630 2308878 2309462 + alanine acetyltransferase gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10630 YPD4_RS10635 YPD4_RS10635 YPD4_RS10635 2310169 2311080 + virulence factor MviM gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10635 YPD4_RS10640 YPD4_1802 YPD4_RS10640 2311347 2312882 + membrane protein gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10640 YPD4_RS10645 YPD4_RS10645 YPD4_RS10645 2313370 2315030 + hemolysin activation protein gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10645 YPD4_RS10650 YPD4_1805 YPD4_RS10650 2315315 2319790 + hemolysin gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10650 YPD4_RS10655 YPD4_1806 YPD4_RS10655 2320021 2321751 - arginine--tRNA ligase gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10655 YPD4_RS10660 YPD4_1807 YPD4_RS10660 2322350 2322925 + hypothetical protein gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10660 YPD4_RS10665 YPD4_1808 YPD4_RS10665 2323157 2323921 + copper homeostasis protein CutC gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10665 YPD4_RS10670 YPD4_1809 YPD4_RS10670 2324114 2325085 - tRNA (mo5U34)-methyltransferase catalyzes the conversion of 5-hydroxyuridine to 5-methoxyuridine in tRNA gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10670 YPD4_RS10675 YPD4_1810 YPD4_RS10675 2325082 2325885 - tRNA (cmo5U34)-methyltransferase gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10675 YPD4_RS10680 YPD4_1811 YPD4_RS10680 2326076 2326471 - membrane protein gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10680 YPD4_RS10685 YPD4_1812 YPD4_RS10685 2326651 2327466 - hypothetical protein gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10685 YPD4_RS10690 YPD4_1813 YPD4_RS10690 2328524 2330320 + aspartate--tRNA ligase gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10690 YPD4_RS10695 YPD4_1814 nudB nudB 2330320 2330763 + dATP pyrophosphohydrolase catalyzes the formation of dihydroneopterin phosphate from dihydroneopterin triphosphate gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10695 YPD4_RS10700 YPD4_1815 YPD4_RS10700 2330821 2331564 + transcriptional regulator gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10700 YPD4_RS10705 YPD4_1816 ruvC ruvC 2331773 2332294 + crossover junction endodeoxyribonuclease RuvC endonuclease%3B resolves Holliday structures%3B forms a complex of RuvABC%3B the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration%3B RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10705 YPD4_RS10710 YPD4_1817 ruvA ruvA 2332577 2333191 + Holliday junction DNA helicase RuvA plays an essential role in ATP-dependent branch migration of the Holliday junction gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10710 YPD4_RS10715 YPD4_1818 ruvB ruvB 2333353 2334357 + Holliday junction DNA helicase RuvB promotes strand exchange during homologous recombination%3B RuvAB complex promotes branch migration%3B RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences%3B forms hexameric rings around opposite DNA arms%3B requires ATP for branch migration and orientation of RuvAB complex determines direction of migration gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10715 YPD4_RS10720 YPD4_1819 znuB znuB 2334412 2335197 - zinc transporter involved in transport of zinc(II) with ZnuA and C gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10720 YPD4_RS10725 YPD4_1820 znuC znuC 2335194 2335952 - Mn2+/Zn2+ABC transporter ATP-binding protein involved in transport of zinc(II) with ZnuA and C gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10725 YPD4_RS10730 YPD4_1821 znuA znuA 2336028 2336984 + zinc uptake system protein ZnuA involved in transport of zinc(II) with ZnuA and C gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10730 YPD4_RS10735 YPD4_1822 YPD4_RS10735 2337005 2338320 + peptidase gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10735 YPD4_RS10740 YPD4_1823 YPD4_RS10740 2338587 2339549 + lipid A biosynthesis acyltransferase gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10740 YPD4_RS10745 YPD4_1824 YPD4_RS10745 2339894 2341336 - pyruvate kinase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10745 YPD4_RS10750 YPD4_1825 YPD4_RS10750 2341666 2342535 - transcriptional regulator Represses the expression of the zwf%2C eda%2C glp and gap gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10750 YPD4_RS10755 YPD4_1826 YPD4_RS10755 2342888 2344372 + glucose-6-phosphate 1-dehydrogenase catalyzes the formation of D-glucono-1%2C5-lactone 6-phosphate from D-glucose 6-phosphate gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10755 YPD4_RS10760 YPD4_RS10760 YPD4_RS10760 2344416 2344607 + hypothetical protein gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10760 YPD4_RS10765 YPD4_1827 YPD4_RS10765 2344614 2345255 + ketohydroxyglutarate aldolase catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate%3B or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10765 YPD4_RS10770 YPD4_1828 YPD4_RS10770 2345970 2346413 + spermidine export protein MdtJ gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10770 YPD4_RS10775 YPD4_1829 YPD4_RS10775 2346400 2346729 + spermidine export protein MdtI with MdtJ is involved in resistance to deoxycholate%2C nalidixic acid%2C fosfomycin%2C and SDS gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10775 YPD4_RS10780 YPD4_1830 YPD4_RS10780 2346861 2347205 - hypothetical protein gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10780 YPD4_RS10785 YPD4_1831 YPD4_RS10785 2347336 2349240 + ATP-dependent helicase gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10785 YPD4_RS10790 YPD4_1832 YPD4_RS10790 2349312 2350010 + tRNA threonylcarbamoyladenosine biosynthesis protein TsaB gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10790 YPD4_RS10795 YPD4_1833 YPD4_RS10795 2350147 2350752 + membrane protein gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10795 YPD4_RS10800 YPD4_1834 YPD4_RS10800 2351395 2353083 + long-chain-fatty-acid--CoA ligase Activates fatty acids by binding to coenzyme A gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10800 YPD4_RS10805 YPD4_1835 YPD4_RS10805 2353243 2354364 + ribonuclease D gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10805 YPD4_RS10810 YPD4_RS10810 minE minE 2354601 2354870 - cell division topological specificity factor works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10810 YPD4_RS10815 YPD4_1836 YPD4_RS10815 2354874 2355686 - cell division inhibitor MinD ATPase%3B with MinC inhibits cell division by blocking formation of the polar Z ring septums gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10815 YPD4_RS10820 YPD4_1837 minC minC 2355711 2356397 - septum site-determining protein MinC blocks the formation of polar Z-ring septums gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10820 YPD4_RS10825 YPD4_RS10825 YPD4_RS10825 2357118 2357389 + hypothetical protein gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10825 YPD4_RS10830 YPD4_1838 YPD4_RS10830 2357530 2358615 + lipoprotein gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10830 YPD4_RS10835 YPD4_1839 YPD4_RS10835 2358686 2359342 + hypothetical protein gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10835 YPD4_RS10840 YPD4_1840 YPD4_RS10840 2359445 2359891 + hypothetical protein gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10840 YPD4_RS10845 YPD4_1841 YPD4_RS10845 2359918 2361156 - integrase gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10845 YPD4_RS10850 YPD4_1842 YPD4_RS10850 2361226 2362248 + transposase gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10850 YPD4_RS10855 YPD4_1843 YPD4_RS10855 2362248 2363027 + transposase gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10855 YPD4_RS10860 YPD4_RS10860 YPD4_RS10860 2363195 2363455 - DNA-binding protein gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10860 YPD4_RS10865 YPD4_1844 YPD4_RS10865 2363755 2364453 - DNA methyltransferase gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10865 YPD4_RS10870 YPD4_1845 YPD4_RS10870 2364480 2364926 + hypothetical protein gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10870 YPD4_RS10875 YPD4_1846 YPD4_RS10875 2365000 2365584 + protein ninG gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10875 YPD4_RS10880 YPD4_RS10880 YPD4_RS10880 2365605 2365994 + antitermination protein gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10880 YPD4_RS10885 YPD4_RS10885 YPD4_RS10885 2365998 2366216 + hypothetical protein gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10885 YPD4_RS10890 YPD4_1847 YPD4_RS10890 2366265 2366828 + hypothetical protein gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10890 YPD4_RS10895 YPD4_RS10895 YPD4_RS10895 2366913 2367089 - hypothetical protein gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10895 YPD4_RS10900 YPD4_RS10900 YPD4_RS10900 2367252 2367461 + hypothetical protein gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10900 YPD4_RS10905 YPD4_RS10905 YPD4_RS10905 2367458 2367733 - hypothetical protein gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10905 YPD4_RS10910 YPD4_RS10910 YPD4_RS10910 2367979 2368176 + hypothetical protein gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10910 YPD4_RS10915 YPD4_1848 YPD4_RS10915 2368207 2368719 + glycoside hydrolase gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10915 YPD4_RS10920 YPD4_1849 YPD4_RS10920 2368704 2369162 + endopeptidase gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10920 YPD4_RS10925 YPD4_1850 YPD4_RS10925 2369708 2370421 + hypothetical protein gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10925 YPD4_RS10930 YPD4_1851 YPD4_RS10930 2370878 2371513 + hypothetical protein gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10930 YPD4_RS10935 YPD4_1852 YPD4_RS10935 2371544 2371993 + hypothetical protein gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10935 YPD4_RS10940 YPD4_RS10940 YPD4_RS10940 2372003 2372581 + terminase large subunit gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10940 YPD4_RS10945 YPD4_1854 YPD4_RS10945 2372629 2373837 + transposase gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10945 YPD4_RS10950 YPD4_1855 YPD4_RS10950 2373842 2374816 + hypothetical protein gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10950 YPD4_RS10955 YPD4_1856 YPD4_RS10955 2374816 2375544 + hypothetical protein gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10955 YPD4_RS10960 YPD4_1857 YPD4_RS10960 2375563 2376204 + hypothetical protein gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10960 YPD4_RS10965 YPD4_1858 YPD4_RS10965 2376205 2377317 + hypothetical protein gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10965 YPD4_RS10970 YPD4_1859 YPD4_RS10970 2377439 2378212 + hypothetical protein gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10970 YPD4_RS10975 YPD4_1860 YPD4_RS10975 2378226 2379431 + hypothetical protein gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10975 YPD4_RS10980 YPD4_1861 YPD4_RS10980 2379479 2379961 + hypothetical protein gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10980 YPD4_RS10985 YPD4_RS10985 YPD4_RS10985 2379958 2380212 + hypothetical protein gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10985 YPD4_RS10990 YPD4_1862 YPD4_RS10990 2380214 2380564 + hypothetical protein gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10990 YPD4_RS10995 YPD4_1863 YPD4_RS10995 2380566 2381150 + hypothetical protein gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS10995 YPD4_RS11000 YPD4_1864 YPD4_RS11000 2381147 2381554 + hypothetical protein gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11000 YPD4_RS11005 YPD4_1865 YPD4_RS11005 2381620 2382540 + phage tail protein gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11005 YPD4_RS11010 YPD4_1866 YPD4_RS11010 2382553 2382864 + hypothetical protein gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11010 YPD4_RS11015 YPD4_RS11015 YPD4_RS11015 2382951 2383172 + hypothetical protein gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11015 YPD4_RS11020 YPD4_1867 YPD4_RS11020 2383173 2386676 + tail protein gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11020 YPD4_RS11025 YPD4_1868 YPD4_RS11025 2386679 2387020 + phage tail protein gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11025 YPD4_RS11030 YPD4_RS11030 YPD4_RS11030 2387180 2387335 + invasin gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11030 YPD4_RS11035 YPD4_1869 YPD4_RS11035 2387325 2387783 + transposase gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11035 YPD4_RS11040 YPD4_1870 YPD4_RS11040 2387904 2388656 + hypothetical protein gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11040 YPD4_RS11045 YPD4_1871 YPD4_RS11045 2388659 2389369 + peptidase P60 gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11045 YPD4_RS11050 YPD4_1872 YPD4_RS11050 2389630 2390262 + hypothetical protein gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11050 YPD4_RS11055 YPD4_RS11055 YPD4_RS11055 2390341 2390772 - Rha family transcriptional regulator gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11055 YPD4_RS11060 YPD4_RS11060 YPD4_RS11060 2390896 2391063 + hypothetical protein gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11060 YPD4_RS11065 YPD4_1873 YPD4_RS11065 2391137 2392144 + hypothetical protein gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11065 YPD4_RS11070 YPD4_RS11070 YPD4_RS11070 2392243 2392794 + membrane protein gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11070 YPD4_RS11075 YPD4_RS11075 YPD4_RS11075 2392937 2393152 + hypothetical protein gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11075 YPD4_RS11080 YPD4_RS11080 YPD4_RS11080 2393208 2393828 + hypothetical protein gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11080 YPD4_RS11085 YPD4_RS11085 YPD4_RS11085 2393870 2394034 + hypothetical protein gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11085 YPD4_RS11090 YPD4_RS11090 YPD4_RS11090 2394003 2394224 - hypothetical protein gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11090 YPD4_RS11095 YPD4_1874 YPD4_RS11095 2394400 2397603 + host specificity protein gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11095 YPD4_RS11100 YPD4_1875 YPD4_RS11100 2397603 2398601 + hypothetical protein gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11100 YPD4_RS11105 YPD4_1876 YPD4_RS11105 2398618 2399535 + hypothetical protein gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11105 YPD4_RS11110 YPD4_1877 YPD4_RS11110 2399546 2399965 + tail assembly protein gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11110 YPD4_RS11115 YPD4_RS11115 YPD4_RS11115 2399962 2400117 + hypothetical protein gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11115 YPD4_RS11120 YPD4_1878 YPD4_RS11120 2400186 2401394 - transposase gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11120 YPD4_RS11125 YPD4_1879 YPD4_RS11125 2401699 2402871 - MFS transporter gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11125 YPD4_RS11130 YPD4_1880 YPD4_RS11130 2402875 2404074 - aminotransferase catalyzes the removal of elemental sulfur from cysteine to produce alanine%3B involved in NAD biosynthesis gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11130 YPD4_RS11135 YPD4_1881 YPD4_RS11135 2404091 2404831 - hypothetical protein gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11135 YPD4_RS11140 YPD4_1882 YPD4_RS11140 2405923 2406279 + hypothetical protein gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11140 YPD4_RS11145 YPD4_1883 YPD4_RS11145 2406696 2407226 - disulfide bond formation protein B gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11145 YPD4_RS11150 YPD4_1884 YPD4_RS11150 2407462 2409036 - Na+/H+ antiporter NhaB gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11150 YPD4_RS11155 YPD4_1885 YPD4_RS11155 2409280 2409999 + fatty acid metabolism regulator protein Multifunctional regulator of fatty acid metabolism gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11155 YPD4_RS11160 YPD4_1886 YPD4_RS11160 2410217 2411752 - SpoVR family protein gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11160 YPD4_RS11165 YPD4_1887 YPD4_RS11165 2412217 2413521 + D-amino acid dehydrogenase catalyzes the oxidative deamination of D-amino acids gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11165 YPD4_RS11170 YPD4_1888 YPD4_RS11170 2413537 2414739 - Bcr/CflA family drug resistance efflux transporter gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11170 YPD4_RS11175 YPD4_1889 YPD4_RS11175 2415004 2415873 - quercetin 2%2C3-dioxygenase gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11175 YPD4_RS11180 YPD4_1890 YPD4_RS11180 2416071 2416976 + LysR family transcriptional regulator gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11180 YPD4_RS11185 YPD4_1891 YPD4_RS11185 2417011 2418129 - membrane protein gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11185 YPD4_RS11190 YPD4_1892 YPD4_RS11190 2418237 2419511 - hypothetical protein gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11190 YPD4_RS11195 YPD4_1893 YPD4_RS11195 2419661 2421595 - PrkA family serine protein kinase gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11195 YPD4_RS11200 YPD4_1894 YPD4_RS11200 2422018 2422788 + MltA-interacting protein MipA scaffolding protein for the murein polymerase MrcB and the lytic transglycosylase MltA gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11200 YPD4_RS11205 YPD4_1895 YPD4_RS11205 2422861 2423737 - glucose-6-phosphate 1-epimerase gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11205 YPD4_RS11210 YPD4_1896 YPD4_RS11210 2424051 2425046 - glyceraldehyde-3-phosphate dehydrogenase gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11210 YPD4_RS11215 YPD4_1897 YPD4_RS11215 2425394 2425807 + peptide methionine sulfoxide reductase MsrB gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11215 YPD4_RS11220 YPD4_RS11220 YPD4_RS11220 2425878 2426150 + hypothetical protein gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11220 YPD4_RS11225 YPD4_1899 YPD4_RS11225 2426284 2426931 - nicotinamidase/pyrazinamidase gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11225 YPD4_RS11230 YPD4_1900 ansA ansA 2426946 2427962 - asparaginase converts asparagine to aspartate and ammonia gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11230 YPD4_RS11235 YPD4_1901 YPD4_RS11235 2428079 2429930 - protease 4 SppA%3B catalyzes the degradation of cleaved signal peptides%3B essential to maintain secretion of mature proteins across the membrane gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11235 YPD4_RS11240 YPD4_1902 YPD4_RS11240 2430093 2430644 + oxidoreductase gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11240 YPD4_RS11245 YPD4_1903 YPD4_RS11245 2430869 2431915 + selenophosphate synthase catalyzes the formation of selenophosphate from selenide and ATP gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11245 YPD4_RS11250 YPD4_1904 YPD4_RS11250 2431977 2433902 + DNA topoisomerase III decatenates replicating daughter chromosomes gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11250 YPD4_RS11255 YPD4_RS11255 YPD4_RS11255 2433899 2434189 + hypothetical protein gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11255 YPD4_RS11260 YPD4_1905 YPD4_RS11260 2434202 2434588 - pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11260 YPD4_RS11265 YPD4_1906 YPD4_RS11265 2434686 2435492 - exonuclease III gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11265 YPD4_RS11270 YPD4_1907 YPD4_RS11270 2436302 2437162 + LysR family transcriptional regulator gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11270 YPD4_RS11275 YPD4_t31 YPD4_RS11275 2437670 2437754 - tRNA-Tyr tRNA gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11275 YPD4_RS11280 YPD4_1908 YPD4_RS11280 2438034 2439242 + transposase gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11280 YPD4_RS11285 YPD4_1909 YPD4_RS11285 2439205 2440074 - formyltetrahydrofolate deformylase gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11285 YPD4_RS11290 YPD4_1910 YPD4_RS11290 2440158 2440622 - hypothetical protein gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11290 YPD4_RS11295 YPD4_1911 YPD4_RS11295 2441956 2442972 + transcriptional regulator gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11295 YPD4_RS11300 YPD4_1912 YPD4_RS11300 2443279 2444625 + UDP-glucose 6-dehydrogenase gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11300 YPD4_RS11305 YPD4_1913 YPD4_RS11305 2445060 2445458 - DNA-binding protein gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11305 YPD4_RS11310 YPD4_1914 YPD4_RS11310 2446208 2446798 + thymidine kinase catalyzes the formation of thymidine 5'-phosphate from thymidine gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11310 YPD4_RS11315 YPD4_1915 YPD4_RS11315 2447167 2447829 - ATPase AAA gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11315 YPD4_RS11320 YPD4_1916 YPD4_RS11320 2447945 2448967 - transposase gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11320 YPD4_RS11325 YPD4_RS11325 YPD4_RS11325 2449507 2452181 - acetaldehyde dehydrogenase gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11325 YPD4_RS11330 YPD4_1919 YPD4_RS11330 2452988 2453632 + membrane protein gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11330 YPD4_RS11335 YPD4_1920 YPD4_RS11335 2454470 2456107 + peptide ABC transporter substrate-binding protein is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11335 YPD4_RS11340 YPD4_1921 oppB oppB 2456194 2457114 + peptide ABC transporter permease gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11340 YPD4_RS11345 YPD4_1922 YPD4_RS11345 2457130 2458038 + peptide ABC transporter permease with OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11345 YPD4_RS11350 YPD4_1923 oppD oppD 2458050 2459051 + peptide ABC transporter ATP-binding protein gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11350 YPD4_RS11355 YPD4_1924 YPD4_RS11355 2459048 2460049 + peptide ABC transporter ATP-binding protein with OppABCD is involved in the transport of oligopeptides%3B OppF and OppD are ATP-binding proteins gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11355 YPD4_RS11360 YPD4_RS11360 YPD4_RS11360 2460098 2460313 - hypothetical protein gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11360 YPD4_RS11365 YPD4_RS11365 YPD4_RS11365 2460610 2460825 + hypothetical protein gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11365 YPD4_RS11370 YPD4_1925 YPD4_RS11370 2461124 2461447 - dsDNA-mimic protein highly acidic protein%3B the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi)%3B binds heat-unstable protein (HU-alpha) which is a histone-like protein gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11370 YPD4_RS11375 YPD4_1926 cls cls 2461612 2463072 - cardiolipin synthase catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11375 YPD4_RS11380 YPD4_1927 YPD4_RS11380 2464118 2464657 + attachment invasion locus protein gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11380 YPD4_RS11385 YPD4_RS11385 YPD4_RS11385 2464878 2465141 + hypothetical protein gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11385 YPD4_RS11390 YPD4_RS11390 YPD4_RS11390 2465257 2465502 - hypothetical protein gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11390 YPD4_RS11395 YPD4_RS11395 YPD4_RS11395 2465725 2466021 - hypothetical protein unknown function%3B YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase%2C but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11395 YPD4_RS11400 YPD4_1928 YPD4_RS11400 2466322 2467080 + transporter TonB gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11400 YPD4_RS11405 YPD4_1929 YPD4_RS11405 2467116 2468324 - transposase gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11405 YPD4_RS11410 YPD4_1930 YPD4_RS11410 2468472 2468921 - acyl-CoA thioester hydrolase gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11410 YPD4_RS11415 YPD4_1931 YPD4_RS11415 2469001 2469543 - intracellular septation protein A Involved in cell division%3B probably involved in intracellular septation gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11415 YPD4_RS11420 YPD4_RS11420 YPD4_RS11420 2469774 2470073 + hypothetical protein gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11420 YPD4_RS11425 YPD4_1932 YPD4_RS11425 2470099 2470857 + sulfate transporter gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11425 YPD4_RS11430 YPD4_1933 YPD4_RS11430 2470889 2471509 + sulfate permease gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11430 YPD4_RS11435 YPD4_1934 YPD4_RS11435 2471630 2472400 - membrane protein gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11435 YPD4_RS11440 YPD4_RS11440 YPD4_RS11440 2472562 2472777 + hypothetical protein gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11440 YPD4_RS11445 YPD4_1935 YPD4_RS11445 2472874 2473521 + outer membrane protein W receptor for colicin S4 gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11445 YPD4_RS11450 YPD4_1936 YPD4_RS11450 2473668 2473982 - lipoprotein gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11450 YPD4_RS11455 YPD4_1937 YPD4_RS11455 2474325 2475131 - tryptophan synthase subunit alpha gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11455 YPD4_RS11460 YPD4_1938 YPD4_RS11460 2475131 2476321 - tryptophan synthase subunit beta catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11460 YPD4_RS11465 YPD4_1939 YPD4_RS11465 2476478 2477905 - tryptophan biosynthesis protein TrpCF monomeric bifunctional protein%3B functions in tryptophan biosynthesis pathway%3B phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11465 YPD4_RS11470 YPD4_1940 YPD4_RS11470 2477909 2478907 - anthranilate phosphoribosyltransferase gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11470 YPD4_RS11475 YPD4_1941 YPD4_RS11475 2478922 2479500 - Anthranilate synthase component 2 gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11475 YPD4_RS11480 YPD4_1942 YPD4_RS11480 2479500 2481062 - anthranilate synthase subunit I with component II%2C the glutamine amidotransferase%2C catalyzes the formation of anthranilate from chorismate and glutamine gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11480 YPD4_RS11485 YPD4_RS11485 YPD4_RS11485 2481181 2481243 - trp operon leader peptide gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11485 YPD4_RS11490 YPD4_RS11490 YPD4_RS11490 2481272 2481400 - hypothetical protein gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11490 YPD4_RS11495 YPD4_1943 YPD4_RS11495 2481481 2482416 + S-adenosylmethionine tRNA ribosyltransferase gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11495 YPD4_RS11500 YPD4_1944 YPD4_RS11500 2482433 2483053 + hypothetical protein gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11500 YPD4_RS11505 YPD4_1945 YPD4_RS11505 2483400 2484434 + 23S rRNA pseudouridylate synthase B gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11505 YPD4_RS11510 YPD4_1946 YPD4_RS11510 2484557 2485147 - cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase catalyzes the formation of adenosylcobalamide from cobinamide and the formation of coenzyme B12 from cob(I)alamin gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11510 YPD4_RS11515 YPD4_1947 YPD4_RS11515 2485164 2485925 - oxoacyl-ACP reductase gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11515 YPD4_RS11520 YPD4_1948 YPD4_RS11520 2486097 2487143 + peptidase multicopy suppressor of htrA(degP) gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11520 YPD4_RS11525 YPD4_RS11525 YPD4_RS11525 2487262 2487513 - hypothetical protein gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11525 YPD4_RS11530 YPD4_RS11530 YPD4_RS11530 2487606 2487905 + hypothetical protein gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11530 YPD4_RS11535 YPD4_1949 YPD4_RS11535 2487932 2490547 + DNA topoisomerase I catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining%2C maintains net negative superhelicity gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11535 YPD4_RS11540 YPD4_1950 cysB cysB 2490944 2491918 + CysB family transcriptional regulator LysR-type transcriptional regulator%3B contains helix-turn-helix (HTH) motif%3B in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon%3B autoregulates expression%3B crystal structure of Klebsiella aerogenes showed tetramer formation gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11540 YPD4_RS11545 YPD4_1951 YPD4_RS11545 2492254 2493111 + hypothetical protein gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11545 YPD4_RS11550 YPD4_1952 YPD4_RS11550 2493475 2496147 + aconitate hydratase Catalyzes the conversion of citrate to isocitrate gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11550 YPD4_RS11555 YPD4_1953 ribA ribA 2496311 2496901 - GTP cyclohydrolase-2 catalyzes the conversion of GTP to formate and 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11555 YPD4_RS11560 YPD4_1954 YPD4_RS11560 2497407 2498168 + phosphatidylglycerophosphatase B gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11560 YPD4_RS11565 YPD4_1955 YPD4_RS11565 2498337 2498648 + membrane protein gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11565 YPD4_RS11570 YPD4_1956 YPD4_RS11570 2498655 2499823 + hypothetical protein gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11570 YPD4_RS11575 YPD4_RS11575 YPD4_RS11575 2499945 2500244 - hypothetical protein gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11575 YPD4_RS11580 YPD4_1957 YPD4_RS11580 2500714 2501451 + orotidine 5'-phosphate decarboxylase gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11580 YPD4_RS11585 YPD4_1958 YPD4_RS11585 2501451 2501777 + translation initiation factor Sui1 involved in start site selection during the initiation of translation gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11585 YPD4_RS11590 YPD4_RS11590 YPD4_RS11590 2502015 2502230 - lipoprotein gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11590 YPD4_RS11595 YPD4_1959 araD araD 2502710 2503405 + L-ribulose-5-phosphate 4-epimerase catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11595 YPD4_RS11600 YPD4_RS11600 YPD4_RS11600 2503434 2503682 - hypothetical protein gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11600 YPD4_RS11605 YPD4_1960 YPD4_RS11605 2504016 2504681 + fructose-6-phosphate aldolase similar to transaldolase from Escherichia coli%3B many organisms have multiple copies gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11605 YPD4_RS11610 YPD4_1961 YPD4_RS11610 2504798 2505103 - hypothetical protein gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11610 YPD4_RS11615 YPD4_1962 YPD4_RS11615 2505096 2507162 - carbon starvation protein A gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11615 YPD4_RS11620 YPD4_1963 YPD4_RS11620 2507512 2509446 - exoribonuclease 2 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11620 YPD4_RS11625 YPD4_1964 YPD4_RS11625 2510105 2511415 + MFS transporter gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11625 YPD4_RS11630 YPD4_1965 YPD4_RS11630 2511453 2512451 + hypothetical protein gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11630 YPD4_RS11635 YPD4_1966 YPD4_RS11635 2512634 2513275 - endonuclease III DNA-(apurinic or apyrimidinic site) lyase%3B has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity%3B removed damaged DNA at cytosines%2C thymines and guanines gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11635 YPD4_RS11640 YPD4_1967 YPD4_RS11640 2513272 2513973 - electron transport complex subunit E gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11640 YPD4_RS11645 YPD4_1968 YPD4_RS11645 2513970 2514599 - electron transport complex subunit G part of membrane-bound complex hought to be involved in electron transport to nitrogen gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11645 YPD4_RS11650 YPD4_1969 YPD4_RS11650 2514609 2515703 - electron transporter RnfG gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11650 YPD4_RS11655 YPD4_1970 YPD4_RS11655 2516192 2517085 + AraC family transcriptional regulator gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11655 YPD4_RS11660 YPD4_1971 YPD4_RS11660 2517190 2519052 - electron transport complex subunit C gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11660 YPD4_RS11665 YPD4_1972 YPD4_RS11665 2519102 2519668 - electron transport complex subunit B part of membrane-bound complex thought to be involved in electron transport to nitrogen gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11665 YPD4_RS11670 YPD4_1973 YPD4_RS11670 2519668 2520249 - electron transport complex subunit A gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11670 YPD4_RS11675 YPD4_1974 YPD4_RS11675 2520377 2520820 - membrane protein gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11675 YPD4_RS11680 YPD4_1975 YPD4_RS11680 2521295 2523079 + peptidase C39 gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11680 YPD4_RS11685 YPD4_RS11685 YPD4_RS11685 2523132 2523353 + ABC transporter permease gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11685 YPD4_RS11690 YPD4_1976 YPD4_RS11690 2523378 2524379 + peptide ABC transporter gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11690 YPD4_RS11695 YPD4_1977 YPD4_RS11695 2524379 2524747 + hemolysin D gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11695 YPD4_RS11700 YPD4_1978 YPD4_RS11700 2524749 2526887 + peptidase C39 gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11700 YPD4_RS11705 YPD4_1979 YPD4_RS11705 2527077 2528579 - L-arabinose isomerase gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11705 YPD4_RS11710 YPD4_1980 YPD4_RS11710 2528663 2530366 - ribulokinase catalyzes the phosphorylation of ribulose to ribulose 5-phosphate gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11710 YPD4_RS11715 YPD4_1981 YPD4_RS11715 2530774 2531757 + arabinose ABC transporter substrate-binding protein with AraGH is involved in the transport of arabinose into the cell gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11715 YPD4_RS11720 YPD4_1982 araG araG 2531855 2533426 + arabinose import ATP-binding protein AraG Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11720 YPD4_RS11725 YPD4_1983 araH araH 2533444 2534493 + arabinose ABC transporter permease Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11725 YPD4_RS11730 YPD4_1984 YPD4_RS11730 2534714 2535646 + transcriptional regulator positive and negative regulator%3B regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11730 YPD4_RS11735 YPD4_1985 YPD4_RS11735 2535774 2536823 + oxidoreductase gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11735 YPD4_RS11740 YPD4_1986 YPD4_RS11740 2537017 2538046 + hypothetical protein gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11740 YPD4_RS11745 YPD4_1987 YPD4_RS11745 2538252 2538851 + hypothetical protein gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11745 YPD4_RS11750 YPD4_1988 YPD4_RS11750 2538900 2540444 - hypothetical protein gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11750 YPD4_RS11755 YPD4_1989 YPD4_RS11755 2540684 2541859 - mannose-6-phosphate isomerase catalyzes the formation of of fructose 6-phosphate from mannose 6-phosphate gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11755 YPD4_RS11760 YPD4_1990 fumC fumC 2542143 2543540 + fumarate hydratase class II class II family (does not require metal)%3B tetrameric enzyme%3B fumarase C%3B reversibly converts (S)-malate to fumarate and water%3B functions in the TCA cycle gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11760 YPD4_RS11765 YPD4_1991 YPD4_RS11765 2543620 2544555 - DNA replication terminus site-binding protein binds to DNA replication terminator sequences to prevent passage of replication forks gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11765 YPD4_RS11770 YPD4_RS11770 YPD4_RS11770 2544760 2546057 - hypothetical protein gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11770 YPD4_RS11775 YPD4_1993 YPD4_RS11775 2546270 2547148 + LysR family transcriptional regulator gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11775 YPD4_RS11780 YPD4_1994 YPD4_RS11780 2547362 2548579 + transcriptional regulator mlc%2C controls the expression of genes involved in the phosphotransferase and phosphoenolpyruvate systems%2C regulates genes involved in the uptake of sugars gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11780 YPD4_RS11785 YPD4_1995 YPD4_RS11785 2548803 2549471 + dithiobiotin synthetase DTB synthetase%3B dethiobiotin synthase%3B involved in production of dethiobiotin from ATP and 7%2C8-diaminononanoate and carbon dioxide%3B contains magnesium gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11785 YPD4_RS11790 YPD4_1996 YPD4_RS11790 2549594 2550874 - voltage-gated ClC-type chloride channel ClcB gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11790 YPD4_RS11795 YPD4_RS11795 YPD4_RS11795 2551242 2551352 - hypothetical protein gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11795 YPD4_RS11800 YPD4_1997 YPD4_RS11800 2551474 2552490 - LacI family transcriptional regulator gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11800 YPD4_RS11805 YPD4_1998 YPD4_RS11805 2552554 2553024 - hypothetical protein gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11805 YPD4_RS11810 YPD4_1999 YPD4_RS11810 2553168 2553518 - LacI family transcriptional regulator gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11810 YPD4_RS11815 YPD4_2000 YPD4_RS11815 2553957 2554988 + myristoyl transferase gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11815 YPD4_RS11820 YPD4_2001 YPD4_RS11820 2554992 2555813 + sulfonate ABC transporter permease gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11820 YPD4_RS11825 YPD4_2002 YPD4_RS11825 2556104 2557744 - AMP nucleosidase Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11825 YPD4_RS11830 YPD4_2003 YPD4_RS11830 2557950 2559383 + virulence factor gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11830 YPD4_RS11835 YPD4_2004 YPD4_RS11835 2559388 2562459 + virulence factor gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11835 YPD4_RS11840 YPD4_2005 YPD4_RS11840 2562456 2564996 + virulence factor gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11840 YPD4_RS11845 YPD4_2006 YPD4_RS11845 2565165 2565959 - hypothetical protein gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11845 YPD4_RS11850 YPD4_2007 YPD4_RS11850 2566568 2568235 + acetolactate synthase gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11850 YPD4_RS11855 YPD4_2008 YPD4_RS11855 2568237 2568539 + acetolactate synthase gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11855 YPD4_RS11860 YPD4_2009 YPD4_RS11860 2568606 2569280 - dUMP phosphatase manganese-dependent 5'-nucleotidase%3B specific for 5'-UMP%2C 5'-dUMP%2C and 5'-dTMP%3B member of haloacid dehalogenase (HAD)-like hydrolase superfamily gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11860 YPD4_RS11865 YPD4_2010 YPD4_RS11865 2569411 2570796 - hypothetical protein gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11865 YPD4_RS11870 YPD4_2011 YPD4_RS11870 2570796 2571806 - membrane protein gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11870 YPD4_RS11875 YPD4_2012 YPD4_RS11875 2572352 2573797 - alkaline phosphatase gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11875 YPD4_RS11880 YPD4_2013 YPD4_RS11880 2574038 2574556 + methylated-DNA--protein-cysteine methyltransferase gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11880 YPD4_RS11885 YPD4_2014 YPD4_RS11885 2574629 2575381 + fumarate and nitrate reduction regulatory protein Global transcription factor that controls the expression of over 100 target genes in response to anoxia gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11885 YPD4_RS11890 YPD4_2015 YPD4_RS11890 2575516 2576472 + universal stress protein E with UspC and UspD is involved in resistance to UV irradiation gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11890 YPD4_RS11895 YPD4_2016 pntB pntB 2576747 2578141 - pyridine nucleotide transhydrogenase catalyzes reversible transfer of hydride ion equivalent between NAD and NADP%3B membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane%3B forms a tetramer composed of two alpha and 2 beta subunits%3B AB-stereospecific enzyme gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11895 YPD4_RS11900 YPD4_2017 pntA pntA 2578214 2579740 - NAD(P) transhydrogenase subunit alpha forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane%3B involved in catalyzing transfer of hydride ion equivalents between NAD and NADP%3B stereospecific (AB-specific)%3B functions as a proton pump by translocating protons from cytoplasm to periplasm gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11900 YPD4_RS11905 YPD4_RS11905 YPD4_RS11905 2579861 2580064 - hypothetical protein gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11905 YPD4_RS11910 YPD4_2018 YPD4_RS11910 2580270 2581223 + hypothetical protein gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11910 YPD4_RS11915 YPD4_2019 YPD4_RS11915 2581493 2582884 + arginine:ornithine antiporter gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11915 YPD4_RS11920 YPD4_2020 YPD4_RS11920 2582908 2583324 - hypothetical protein gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11920 YPD4_RS11925 YPD4_2021 YPD4_RS11925 2583621 2584367 + two-component system response regulator response regulator in two-component regulatory system with RstB gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11925 YPD4_RS11930 YPD4_2022 YPD4_RS11930 2584416 2585672 + two-component system sensor histidine kinase gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11930 YPD4_RS11935 YPD4_2023 YPD4_RS11935 2585766 2587265 + peptidase M32 gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11935 YPD4_RS11940 YPD4_2024 YPD4_RS11940 2587387 2587845 - transposase gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11940 YPD4_RS11945 YPD4_RS11945 YPD4_RS11945 2587835 2588005 - transposase gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11945 YPD4_RS11950 YPD4_2025 YPD4_RS11950 2588815 2591439 + toxin TccC3 gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11950 YPD4_RS11955 YPD4_2026 YPD4_RS11955 2591442 2591798 + DNA gyrase gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11955 YPD4_RS11960 YPD4_RS11960 YPD4_RS11960 2591902 2592060 - invertase gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11960 YPD4_RS11965 YPD4_2027 YPD4_RS11965 2592625 2593203 - hypothetical protein gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11965 YPD4_RS11970 YPD4_2028 YPD4_RS11970 2593229 2593783 - cytochrome B561 gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11970 YPD4_RS11975 YPD4_RS11975 YPD4_RS11975 2594178 2594390 + hypothetical protein gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11975 YPD4_RS11980 YPD4_RS11980 YPD4_RS11980 2594387 2594671 + acid shock protein gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11980 YPD4_RS11985 YPD4_2029 YPD4_RS11985 2595005 2595841 + peptidase gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11985 YPD4_RS11990 YPD4_2030 YPD4_RS11990 2595897 2596220 - DNA-binding protein gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11990 YPD4_RS11995 YPD4_2031 YPD4_RS11995 2596217 2596546 - hypothetical protein gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS11995 YPD4_RS12000 YPD4_2032 YPD4_RS12000 2596885 2600727 - ATP-dependent RNA helicase HrpA involved in the post-transcriptional processing of the daa operon mRNA%2C which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12000 YPD4_RS12005 YPD4_2033 YPD4_RS12005 2601195 2601800 + FMN-dependent NADH-azoreductase FMN-dependent%3B requires NADH%3B catalyzes the cleavage of azo bond in aromatic azo compounds gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12005 YPD4_RS12010 YPD4_2034 YPD4_RS12010 2601921 2602877 - DNA-binding transcriptional regulator gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12010 YPD4_RS12015 YPD4_2035 YPD4_RS12015 2603087 2604478 + D-arabinitol 4-dehydrogenase gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12015 YPD4_RS12020 YPD4_2036 YPD4_RS12020 2604661 2605032 - hypothetical protein gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12020 YPD4_RS12025 YPD4_RS12025 YPD4_RS12025 2605042 2605236 - hypothetical protein gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12025 YPD4_RS12030 YPD4_2037 YPD4_RS12030 2605233 2607929 - hypothetical protein gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12030 YPD4_RS12035 YPD4_2038 YPD4_RS12035 2608195 2609187 + lactate dehydrogenase fermentative%3B catalyzes the formationof pyruvate from lactate gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12035 YPD4_RS12040 YPD4_2039 YPD4_RS12040 2609257 2609709 + heat-inducible protein gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12040 YPD4_RS12045 YPD4_2040 YPD4_RS12045 2609767 2610078 - hypothetical protein gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12045 YPD4_RS12050 YPD4_2041 YPD4_RS12050 2610393 2611052 + methyltransferase gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12050 YPD4_RS12055 YPD4_2042 YPD4_RS12055 2611112 2611444 - multidrug DMT transporter gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12055 YPD4_RS12060 YPD4_2043 YPD4_RS12060 2611923 2615456 + pyruvate-flavodoxin oxidoreductase gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12060 YPD4_RS12065 YPD4_2044 YPD4_RS12065 2615731 2616672 + tRNA 2-thiocytidine biosynthesis protein TtcA TtcA%3B YdaO%3B catalyzes the thiolation of cytosine 32 in specific tRNAs%3B forms 2-thiocytidine (s(2)C) gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12065 YPD4_RS12070 YPD4_2045 YPD4_RS12070 2616943 2617947 + alpha/beta hydrolase gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12070 YPD4_RS12075 YPD4_2046 YPD4_RS12075 2618259 2619098 + hypothetical protein gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12075 YPD4_RS12080 YPD4_2047 zntB zntB 2619472 2620455 - zinc transporter ZntB gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12080 YPD4_RS12085 YPD4_2048 YPD4_RS12085 2620698 2622314 - peptide ABC transporter substrate-binding protein is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12085 YPD4_RS12090 YPD4_2049 YPD4_RS12090 2622755 2623462 + murein peptide amidase A gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12090 YPD4_RS12095 YPD4_2050 YPD4_RS12095 2623504 2624478 - L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-alanyl-D-glutamate to L-alanyl-L-glutamate gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12095 YPD4_RS12100 YPD4_2051 YPD4_RS12100 2624548 2625570 + transposase gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12100 YPD4_RS12105 YPD4_2052 YPD4_RS12105 2625570 2626349 + transposase gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12105 YPD4_RS12110 YPD4_RS12110 YPD4_RS12110 2626900 2627133 - DNA-binding protein gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12110 YPD4_RS12115 YPD4_2053 YPD4_RS12115 2627288 2628544 - lipoprotein gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12115 YPD4_RS12120 YPD4_RS12120 YPD4_RS12120 2628937 2629185 - hypothetical protein gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12120 YPD4_RS12125 YPD4_RS12125 YPD4_RS12125 2629750 2629944 + hypothetical protein gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12125 YPD4_RS12130 YPD4_2054 YPD4_RS12130 2630346 2631575 + alanine racemase converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12130 YPD4_RS12135 YPD4_2055 YPD4_RS12135 2632194 2633147 - hypothetical protein gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12135 YPD4_RS12140 YPD4_2056 YPD4_RS12140 2633247 2633681 - hypothetical protein gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12140 YPD4_RS12145 YPD4_2057 YPD4_RS12145 2633668 2635761 - hypothetical protein gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12145 YPD4_RS12150 YPD4_2058 YPD4_RS12150 2636235 2636999 - N-acetylmuramoyl-L-alanine amidase gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12150 YPD4_RS12155 YPD4_RS12155 YPD4_RS12155 2637131 2637250 + hypothetical protein gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12155 YPD4_RS12160 YPD4_2059 YPD4_RS12160 2637570 2638214 - protein phosphatase CheZ cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12160 YPD4_RS12165 YPD4_2060 YPD4_RS12165 2638224 2638613 - chemotaxis protein CheY chemotaxis regulator that%2C when phosphorylated%2C interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12165 YPD4_RS12170 YPD4_2061 YPD4_RS12170 2638714 2639763 - two-component system protein-glutamate methylesterase response regulator regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12170 YPD4_RS12175 YPD4_2062 YPD4_RS12175 2639763 2640635 - chemotaxis protein CheR methylates the MCP gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12175 YPD4_RS12180 YPD4_2063 YPD4_RS12180 2640808 2642418 - methyl-accepting chemotaxis protein mediates taxis toward dipeptides gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12180 YPD4_RS12185 YPD4_2064 YPD4_RS12185 2642602 2644275 - methyl-accepting chemotaxis protein serine sensor receptor gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12185 YPD4_RS12190 YPD4_2065 YPD4_RS12190 2644516 2645217 - hypothetical protein gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12190 YPD4_RS12195 YPD4_2066 YPD4_RS12195 2645286 2648162 - membrane protein gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12195 YPD4_RS12200 YPD4_2067 YPD4_RS12200 2648690 2652496 - autotransporter gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12200 YPD4_RS12205 YPD4_2068 YPD4_RS12205 2652971 2653636 - DNA-binding protein gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12205 YPD4_RS12210 YPD4_2069 YPD4_RS12210 2653826 2654812 + xylose isomerase gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12210 YPD4_RS12215 YPD4_2070 YPD4_RS12215 2654809 2655186 + endoribonuclease L-PSP gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12215 YPD4_RS12220 YPD4_2071 YPD4_RS12220 2655199 2656434 + membrane protein gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12220 YPD4_RS12225 YPD4_2072 YPD4_RS12225 2656726 2657223 - purine-binding chemotaxis protein gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12225 YPD4_RS12230 YPD4_2073 YPD4_RS12230 2657386 2659551 - chemotaxis protein CheA gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12230 YPD4_RS12235 YPD4_2074 YPD4_RS12235 2659605 2659967 + hypothetical protein gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12235 YPD4_RS12240 YPD4_2075 YPD4_RS12240 2659904 2660850 - hypothetical protein gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12240 YPD4_RS12245 YPD4_2076 YPD4_RS12245 2660847 2661734 - flagellar motor protein MotA With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12245 YPD4_RS12250 YPD4_2077 YPD4_RS12250 2661939 2662520 - AraC family transcriptional regulator With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12250 YPD4_RS12255 YPD4_RS12255 YPD4_RS12255 2662524 2662875 - transcriptional regulator with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12255 YPD4_RS12260 YPD4_2078 YPD4_RS12260 2664063 2666762 - magnesium-translocating P-type ATPase P-type%3B involved in magnesium transport into the cytoplasm gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12260 YPD4_RS12265 YPD4_2079 YPD4_RS12265 2667163 2667861 - magnesium transporter gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12265 YPD4_RS12270 YPD4_RS12270 YPD4_RS12270 2668213 2668383 - hypothetical protein gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12270 YPD4_RS12275 YPD4_RS12275 YPD4_RS12275 2669020 2670721 + chemotaxis protein gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12275 YPD4_RS12280 YPD4_RS12280 YPD4_RS12280 2670904 2671095 - protein DsrB gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12280 YPD4_RS12285 YPD4_RS12285 YPD4_RS12285 2671310 2671522 - cold-shock protein gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12285 YPD4_RS12290 YPD4_2082 lacZ lacZ 2672063 2675245 + beta-galactosidase forms a homotetramer%3B hydrolyzes lactose disaccharide to galactose and glucose%3B converts lactose to allolactose which is the natural inducer of the lac operon gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12290 YPD4_RS12295 YPD4_2083 YPD4_RS12295 2675652 2676662 + zinc-binding dehydrogenase gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12295 YPD4_RS12300 YPD4_2084 YPD4_RS12300 2676945 2677478 + membrane protein gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12300 YPD4_RS12305 YPD4_2085 YPD4_RS12305 2677984 2678433 + AsnC family transcriptional regulator gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12305 YPD4_RS12310 YPD4_2086 YPD4_RS12310 2678525 2679424 + hypothetical protein gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12310 YPD4_RS12315 YPD4_RS12315 YPD4_RS12315 2679727 2679930 + hypothetical protein gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12315 YPD4_RS12320 YPD4_2087 YPD4_RS12320 2680232 2681557 - phosphoanhydride phosphorylase gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12320 YPD4_RS12325 YPD4_RS12325 YPD4_RS12325 2681858 2682031 - hypothetical protein gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12325 YPD4_RS12330 YPD4_2088 YPD4_RS12330 2682089 2682472 - transcriptional regulator gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12330 YPD4_RS12335 YPD4_2089 YPD4_RS12335 2682632 2683489 + quinone oxidoreductase gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12335 YPD4_RS12340 YPD4_2090 YPD4_RS12340 2684409 2685989 + methyl-accepting chemotaxis protein gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12340 YPD4_RS12345 YPD4_RS12345 YPD4_RS12345 2686109 2686369 + hypothetical protein gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12345 YPD4_RS12350 YPD4_2091 YPD4_RS12350 2686645 2687688 + sucrose operon repressor gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12350 YPD4_RS12355 YPD4_2092 YPD4_RS12355 2687834 2689087 - isocitrate dehydrogenase Converts isocitrate to alpha ketoglutarate gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12355 YPD4_RS12360 YPD4_2093 YPD4_RS12360 2689218 2689844 + ribosomal large subunit pseudouridine synthase E catalyzes the formation of pseudouridine from uracil-2457 in 23S ribosomal RNA gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12360 YPD4_RS12365 YPD4_2094 YPD4_RS12365 2689837 2690283 + phosphatase gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12365 YPD4_RS12370 YPD4_2095 mnmA mnmA 2690470 2691585 + tRNA-specific 2-thiouridylase MnmA catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12370 YPD4_RS12375 YPD4_2096 YPD4_RS12375 2691643 2692269 + High frequency lysogenization protein HflD homolog HflD%3B UPF0274%3B in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein%3B in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12375 YPD4_RS12380 YPD4_2097 YPD4_RS12380 2692330 2693700 + adenylosuccinate lyase Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12380 YPD4_RS12385 YPD4_2098 YPD4_RS12385 2693888 2694511 + lipoprotein gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12385 YPD4_RS12390 YPD4_2099 YPD4_RS12390 2694722 2695393 + two-component system response regulator response regulator in two-component regulatory system with PhoQ%3B involved in magnesium starvation and stress gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12390 YPD4_RS12395 YPD4_2100 YPD4_RS12395 2695399 2696853 + sensor protein PhoQ gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12395 YPD4_RS12400 YPD4_2101 YPD4_RS12400 2696937 2698058 + hypothetical protein gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12400 YPD4_RS12405 YPD4_2102 YPD4_RS12405 2698291 2699526 - peptidase T gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12405 YPD4_RS12410 YPD4_2103 YPD4_RS12410 2699856 2700692 - NAD-dependent deacetylase Modulates the activities of several enzymes which are inactive in their acetylated form gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12410 YPD4_RS12415 YPD4_2104 YPD4_RS12415 2700886 2701656 - N-acetyl-D-glucosamine kinase catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12415 YPD4_RS12420 YPD4_2105 YPD4_RS12420 2701675 2702922 - transporter part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12420 YPD4_RS12425 YPD4_2106 lolD lolD 2702922 2703626 - lipoprotein-releasing system ATP-binding protein LolD outer membrane specific%3B part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins%2C from the inner membrane to the periplasmic chaperone gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12425 YPD4_RS12430 YPD4_2107 YPD4_RS12430 2703619 2704821 - transporter part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12430 YPD4_RS12435 YPD4_2108 YPD4_RS12435 2705091 2708537 + transcription-repair coupling factor gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12435 YPD4_RS12440 YPD4_2109 YPD4_RS12440 2708776 2709315 - hypothetical protein gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12440 YPD4_RS12445 YPD4_2110 YPD4_RS12445 2709645 2710853 - transposase gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12445 YPD4_RS12450 YPD4_2111 YPD4_RS12450 2710949 2711362 - hypothetical protein gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12450 YPD4_RS12455 YPD4_2112 YPD4_RS12455 2711370 2711735 - hypothetical protein gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12455 YPD4_RS12460 YPD4_2113 YPD4_RS12460 2712477 2713781 - NADH dehydrogenase gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12460 YPD4_RS12465 YPD4_2114 YPD4_RS12465 2714156 2714698 - hypothetical protein gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12465 YPD4_RS12470 YPD4_2115 YPD4_RS12470 2714826 2715845 - beta-hexosaminidase hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12470 YPD4_RS12475 YPD4_2116 YPD4_RS12475 2715928 2716794 - thiamine kinase gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12475 YPD4_RS12480 YPD4_2117 YPD4_RS12480 2716775 2717350 - penicillin-binding protein activator LpoB gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12480 YPD4_RS12485 YPD4_2118 YPD4_RS12485 2717391 2717780 - lipoprotein gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12485 YPD4_RS12490 YPD4_2119 YPD4_RS12490 2717815 2718168 - purine nucleoside phosphoramidase gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12490 YPD4_RS12495 YPD4_2120 YPD4_RS12495 2718342 2719160 - shikimate 5-dehydrogenase gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12495 YPD4_RS12500 YPD4_2121 YPD4_RS12500 2719603 2720061 - transposase gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12500 YPD4_RS12505 YPD4_2122 YPD4_RS12505 2720251 2721684 - PTS glucose transporter subunit IIBC phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12505 YPD4_RS12510 YPD4_2123 YPD4_RS12510 2721990 2722799 - DNAse gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12510 YPD4_RS12515 YPD4_2124 YPD4_RS12515 2722814 2723836 - DNA polymerase III subunit delta' catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12515 YPD4_RS12520 YPD4_2125 YPD4_RS12520 2723836 2724474 - thymidylate kinase gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12520 YPD4_RS12525 YPD4_2126 YPD4_RS12525 2724464 2725489 - aminodeoxychorismate lyase gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12525 YPD4_RS12530 YPD4_2127 YPD4_RS12530 2725778 2726584 - 4-amino-4-deoxychorismate lyase catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12530 YPD4_RS12535 YPD4_2128 YPD4_RS12535 2727000 2727458 - transposase gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12535 YPD4_RS12540 YPD4_2129 YPD4_RS12540 2727658 2728863 - 3-oxoacyl-ACP synthase FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12540 YPD4_RS12545 YPD4_RS12545 YPD4_RS12545 2728965 2729231 - acyl carrier protein carries the fatty acid chain in fatty acid biosynthesis gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12545 YPD4_RS12550 YPD4_RS12550 fabG fabG 2729385 2730120 - 3-ketoacyl-ACP reductase catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12550 YPD4_RS12555 YPD4_2131 YPD4_RS12555 2730134 2731063 - malonyl CoA-ACP transacylase gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12555 YPD4_RS12560 YPD4_2132 YPD4_RS12560 2731101 2732051 - 3-oxoacyl-ACP synthase III FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12560 YPD4_RS12565 YPD4_2133 YPD4_RS12565 2732058 2733062 - phosphate acyltransferase gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12565 YPD4_RS12570 YPD4_RS12570 rpmF rpmF 2733126 2733293 - 50S ribosomal protein L32 some L32 proteins have zinc finger motifs consisting of CXXC while others do not gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12570 YPD4_RS12575 YPD4_2134 YPD4_RS12575 2733306 2733830 - hypothetical protein gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12575 YPD4_RS12580 YPD4_2135 YPD4_RS12580 2733972 2734568 + septum formation inhibitor Maf Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12580 YPD4_RS12585 YPD4_2136 YPD4_RS12585 2734723 2735181 - transposase gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12585 YPD4_RS12590 YPD4_RS12590 YPD4_RS12590 2735171 2735326 - invasin gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12590 YPD4_RS12595 YPD4_2137 YPD4_RS12595 2735401 2736363 - ribosomal large subunit pseudouridine synthase C catalyzes the transformation of uracil to pseudouracil at nucleotides U955%2C U2504%2C and U2580 in 23S rRNA gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12595 YPD4_RS12600 YPD4_2138 YPD4_RS12600 2736947 2740603 + ribonuclease E gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12600 YPD4_RS12605 YPD4_2139 YPD4_RS12605 2740699 2741907 + transposase gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12605 YPD4_RS12610 YPD4_RS12610 YPD4_RS12610 2742184 2742471 - antibiotic biosynthesis monooxygenase gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12610 YPD4_RS12615 YPD4_2140 YPD4_RS12615 2742706 2743752 + dihydroorotase gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12615 YPD4_RS12620 YPD4_RS12620 YPD4_RS12620 2744065 2744310 + DNA damage-inducible protein I gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12620 YPD4_RS12625 YPD4_RS12625 YPD4_RS12625 2744509 2744637 - hypothetical protein gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12625 YPD4_RS12630 YPD4_RS12630 bssS bssS 2744816 2745112 + biofilm formation regulatory protein BssS BssS%3B regulator of biofilm through signal secretion%3B disruption of this gene in Escherichia coli led to effects on biofilm formation%2C alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12630 YPD4_RS12635 YPD4_2141 YPD4_RS12635 2745075 2746283 - transposase gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12635 YPD4_RS12640 YPD4_2142 solA solA 2746644 2747759 + N-methyl-L-tryptophan oxidase catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde%3B FAD-binding%3B can also catalyze the demethylation of other N-methyl amino acids gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12640 YPD4_RS12645 YPD4_2143 YPD4_RS12645 2748026 2748640 + LuxR family transcriptional regulator gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12645 YPD4_RS12650 YPD4_2144 tqsA tqsA 2749212 2750270 - pheromone autoinducer 2 transporter transport of quorum-sensing signal%3B mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12650 YPD4_RS12655 YPD4_2145 YPD4_RS12655 2750419 2751486 - sulfurtransferase gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12655 YPD4_RS12660 YPD4_RS12660 YPD4_RS12660 2751530 2751658 - hypothetical protein gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12660 YPD4_RS12665 YPD4_RS12665 YPD4_RS12665 2751845 2752009 - membrane protein gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12665 YPD4_RS12670 YPD4_RS12670 YPD4_RS12670 2752339 2752500 - hypothetical protein gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12670 YPD4_RS12675 YPD4_2146 YPD4_RS12675 2752537 2753214 - transporter gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12675 YPD4_RS12680 YPD4_2147 YPD4_RS12680 2753645 2754289 + acyl-homoserine-lactone synthase gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12680 YPD4_RS12685 YPD4_2148 YPD4_RS12685 2754282 2755019 - LuxR family transcriptional regulator gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12685 YPD4_RS12690 YPD4_2149 YPD4_RS12690 2755506 2756432 - LysR family transcriptional regulator gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12690 YPD4_RS12695 YPD4_RS12695 YPD4_RS12695 2756547 2756756 - hypothetical protein gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12695 YPD4_RS12700 YPD4_2150 YPD4_RS12700 2756880 2758238 + MFS transporter gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12700 YPD4_RS12705 YPD4_2151 YPD4_RS12705 2758285 2758788 + aldehyde-activating protein gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12705 YPD4_RS12710 YPD4_2152 YPD4_RS12710 2758799 2759818 + oxidoreductase gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12710 YPD4_RS12715 YPD4_2153 YPD4_RS12715 2759896 2760450 - CRISPR-associated protein Csy4 gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12715 YPD4_RS12720 YPD4_2154 YPD4_RS12720 2760461 2761465 - CRISPR-associated protein Cas5 gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12720 YPD4_RS12725 YPD4_2155 YPD4_RS12725 2761483 2762434 - CRISPR-associated protein gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12725 YPD4_RS12730 YPD4_2156 YPD4_RS12730 2762431 2763777 - CRISPR type I-F system protein Csy1 gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12730 YPD4_RS12735 YPD4_RS12735 YPD4_RS12735 2763815 2764069 - hypothetical protein gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12735 YPD4_RS12740 YPD4_2157 YPD4_RS12740 2764185 2767472 - CRISPR-associated protein Cas3 gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12740 YPD4_RS12745 YPD4_2158 YPD4_RS12745 2767469 2768449 - subtype I-F CRISPR-associated endonuclease Cas1 gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12745 YPD4_RS12750 YPD4_2159 YPD4_RS12750 2769594 2770838 + miniconductance mechanosensitive channel gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12750 YPD4_RS12755 YPD4_2160 YPD4_RS12755 2771439 2772713 - hypothetical protein gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12755 YPD4_RS12760 YPD4_2161 YPD4_RS12760 2772752 2773867 - hypothetical protein gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12760 YPD4_RS12765 YPD4_2162 YPD4_RS12765 2773990 2774928 - hypothetical protein gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12765 YPD4_RS12770 YPD4_2163 YPD4_RS12770 2774955 2776010 - glycosidase gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12770 YPD4_RS12775 YPD4_2164 YPD4_RS12775 2776157 2776981 - sugar ABC transporter permease gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12775 YPD4_RS12780 YPD4_2165 YPD4_RS12780 2776982 2777857 - sugar ABC transporter permease gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12780 YPD4_RS12785 YPD4_2166 YPD4_RS12785 2777966 2779252 - solute-binding protein gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12785 YPD4_RS12790 YPD4_2167 YPD4_RS12790 2779524 2780564 + LacI family transcriptional regulator gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12790 YPD4_RS12795 YPD4_2168 YPD4_RS12795 2780581 2781969 + phosphomannomutase capsular polysaccharide biosynthesis protein%3B catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12795 YPD4_RS12800 YPD4_2169 YPD4_RS12800 2782069 2783148 + sugar ABC transporter ATP-binding protein gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12800 YPD4_RS12805 YPD4_2170 YPD4_RS12805 2783413 2783865 - hypothetical protein gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12805 YPD4_RS12810 YPD4_2171 YPD4_RS12810 2784216 2784608 - adhesin gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12810 YPD4_RS12815 YPD4_RS12815 YPD4_RS12815 2784768 2785172 - hypothetical protein gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12815 YPD4_RS12820 YPD4_RS12820 YPD4_RS12820 2785314 2785481 - hypothetical protein gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12820 YPD4_RS12825 YPD4_RS12825 YPD4_RS12825 2785684 2785881 - hypothetical protein gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12825 YPD4_RS12830 YPD4_RS12830 YPD4_RS12830 2785891 2787924 - hemagglutinin gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12830 YPD4_RS12835 YPD4_RS12835 YPD4_RS12835 2788100 2788447 - hypothetical protein gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12835 YPD4_RS12840 YPD4_RS12840 YPD4_RS12840 2788588 2788839 - hypothetical protein gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12840 YPD4_RS12845 YPD4_2175 YPD4_RS12845 2789084 2789593 - hypothetical protein gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12845 YPD4_RS12850 YPD4_2176 YPD4_RS12850 2789595 2797190 - hemagglutinin gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12850 YPD4_RS12855 YPD4_2177 YPD4_RS12855 2797346 2799034 - hemolysin secretion/activation protein%2C ShlB/FhaC/HecB family gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12855 YPD4_RS12860 YPD4_2178 YPD4_RS12860 2799687 2800652 - dioxygenase subunit beta gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12860 YPD4_RS12865 YPD4_2179 YPD4_RS12865 2800748 2801872 - dioxygenase gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12865 YPD4_RS12870 YPD4_2180 YPD4_RS12870 2801989 2803635 - betaine/carnitine/choline BCCT transporter member of the betaine%2C carnitine%2C choline transporter (BCCT) family%3B unknown function gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12870 YPD4_RS12875 YPD4_RS12875 YPD4_RS12875 2804001 2804183 - gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12875 YPD4_RS12880 YPD4_2181 YPD4_RS12880 2804252 2805337 - tartrate dehydrogenase gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12880 YPD4_RS12885 YPD4_2182 YPD4_RS12885 2805440 2806381 + LysR family transcriptional regulator gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12885 YPD4_RS12890 YPD4_2183 YPD4_RS12890 2806628 2807632 + LacI family transcriptional regulator gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12890 YPD4_RS12895 YPD4_2184 YPD4_RS12895 2807765 2808757 - sugar ABC transporter permease gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12895 YPD4_RS12900 YPD4_2185 YPD4_RS12900 2808754 2810244 - ribonucleotide-diphosphate reductase subunit alpha gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12900 YPD4_RS12905 YPD4_2186 YPD4_RS12905 2810284 2811201 - LacI family transcriptional regulator gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12905 YPD4_RS12910 YPD4_2187 YPD4_RS12910 2811376 2812443 - iditol 2-dehydrogenase gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12910 YPD4_RS12915 YPD4_2188 YPD4_RS12915 2813185 2813853 - hypothetical protein gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12915 YPD4_RS12920 YPD4_2189 YPD4_RS12920 2814049 2814591 - hypothetical protein gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12920 YPD4_RS12925 YPD4_2190 YPD4_RS12925 2814829 2815767 - cytochrome C551 gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12925 YPD4_RS12930 YPD4_2191 ompX ompX 2816083 2816607 - outer membrane protein X OmpX%3B involved in cell adhesion%3B forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface%3B mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12930 YPD4_RS12935 YPD4_2192 YPD4_RS12935 2817012 2817899 + threonine transporter RhtB gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12935 YPD4_RS12940 YPD4_2193 YPD4_RS12940 2817915 2818412 + acetyltransferase gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12940 YPD4_RS12945 YPD4_2194 YPD4_RS12945 2818435 2819211 + trans-aconitate 2-methyltransferase catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12945 YPD4_RS12950 YPD4_2195 YPD4_RS12950 2819468 2819971 + DNA protection during starvation protein binds DNA in a non-sequence-specific manner and is abundant during stationary phase%3B forms a DNA-protein crystal that protects DNA from damage%3B required for normal starvation response and long-term stationary viability%3B forms a homododecameric complex and sequesters iron which provides protection against oxidative damage gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12950 YPD4_RS12955 YPD4_2196 YPD4_RS12955 2820291 2821418 + transporter gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12955 YPD4_RS12960 YPD4_2197 glnH glnH 2821988 2822731 + glutamine ABC transporter substrate-binding protein similar to periplasmic-binding component of ABC transporters gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12960 YPD4_RS12965 YPD4_2198 glnP glnP 2822766 2823422 + glutamine ABC transporter permease similar to permease component of ABC transporters%3B mutations impair ability of Escherichia coli to transport and utilize glutamine gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12965 YPD4_RS12970 YPD4_2199 glnQ glnQ 2823419 2824141 + glutamine ABC transporter ATP-binding protein similar to ATP-binding component of ABC transporters gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12970 YPD4_RS12975 YPD4_2200 YPD4_RS12975 2824381 2825679 - methyl-accepting chemotaxis protein gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12975 YPD4_RS12980 YPD4_2201 YPD4_RS12980 2825738 2826760 + transposase gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12980 YPD4_RS12985 YPD4_2202 YPD4_RS12985 2826760 2827539 + transposase gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12985 YPD4_RS12990 YPD4_2203 YPD4_RS12990 2827906 2828211 - membrane protein gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12990 YPD4_RS12995 YPD4_2204 YPD4_RS12995 2828308 2828709 - membrane protein gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS12995 YPD4_RS13000 YPD4_2205 YPD4_RS13000 2828691 2830010 - hypothetical protein gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13000 YPD4_RS13005 YPD4_2206 YPD4_RS13005 2830003 2831766 - methyltransferase gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13005 YPD4_RS13010 YPD4_2207 YPD4_RS13010 2831763 2832395 - acyltransferase gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13010 YPD4_RS13015 YPD4_2208 YPD4_RS13015 2832405 2833334 - phosphatidate cytidylyltransferase gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13015 YPD4_RS13020 YPD4_2209 YPD4_RS13020 2833327 2833929 - membrane protein gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13020 YPD4_RS13025 YPD4_RS13025 YPD4_RS13025 2834156 2834332 - hypothetical protein gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13025 YPD4_RS13030 YPD4_RS13030 YPD4_RS13030 2834329 2834535 - hypothetical protein gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13030 YPD4_RS13035 YPD4_RS13035 YPD4_RS13035 2835108 2835446 + hypothetical protein gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13035 YPD4_RS13040 YPD4_RS13040 YPD4_RS13040 2835431 2835544 + hypothetical protein gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13040 YPD4_RS13045 YPD4_2210 YPD4_RS13045 2835582 2836079 + hypothetical protein gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13045 YPD4_RS13050 YPD4_RS13050 YPD4_RS13050 2836193 2836393 + hypothetical protein gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13050 YPD4_RS13055 YPD4_RS13055 YPD4_RS13055 2836652 2836834 + hypothetical protein gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13055 YPD4_RS13060 YPD4_t32 YPD4_RS13060 2836898 2836974 - tRNA-Arg tRNA gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13060 YPD4_RS13065 YPD4_2211 YPD4_RS13065 2837189 2838055 + bifunctional protein FolD gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13065 YPD4_RS13070 YPD4_RS13070 YPD4_RS13070 2838070 2838282 + ribosome-associated protein gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13070 YPD4_RS13075 YPD4_2212 YPD4_RS13075 2838429 2838887 - transposase gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13075 YPD4_RS13080 YPD4_2213 upp upp 2839063 2839689 - uracil phosphoribosyltransferase Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13080 YPD4_RS13085 YPD4_2214 YPD4_RS13085 2840086 2841129 + phosphoribosylformylglycinamidine cyclo-ligase catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13085 YPD4_RS13090 YPD4_2215 purN purN 2841244 2841882 + phosphoribosylglycinamide formyltransferase glycinamide ribonucleotide transformylase%3B GAR Tfase%3B catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate%3B PurN requires formyl folate for the reaction unlike PurT which uses formate gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13090 YPD4_RS13095 YPD4_2216 YPD4_RS13095 2842111 2842656 + spermidine N1-acetyltransferase catalyzes the formation of N(1)- and N(8)-acetylspermidine from spermidine gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13095 YPD4_RS13100 YPD4_2217 YPD4_RS13100 2842750 2843472 - N-methylation of lysine residues in flagellin gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13100 YPD4_RS13105 YPD4_2218 YPD4_RS13105 2843559 2843939 - hypothetical protein gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13105 YPD4_RS13110 YPD4_2219 pstB pstB 2844167 2844979 - phosphate import ATP-binding protein PstB 1 ATP-binding protein%3B PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13110 YPD4_RS13115 YPD4_2220 YPD4_RS13115 2845007 2846659 - phosphate ABC transporter permease gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13115 YPD4_RS13120 YPD4_2221 YPD4_RS13120 2846719 2848950 - phosphate ABC transporter permease gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13120 YPD4_RS13125 YPD4_2222 YPD4_RS13125 2849221 2851284 + polyphosphate kinase gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13125 YPD4_RS13130 YPD4_2223 YPD4_RS13130 2851295 2852854 + exopolyphosphatase gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13130 YPD4_RS13135 YPD4_RS13135 YPD4_RS13135 2852990 2853178 + hypothetical protein gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13135 YPD4_RS13140 YPD4_2224 YPD4_RS13140 2853230 2854705 + dihydroorotate dehydrogenase gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13140 YPD4_RS13145 YPD4_2225 YPD4_RS13145 2854845 2856197 + chaperone gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13145 YPD4_RS13150 YPD4_RS13150 YPD4_RS13150 2856469 2857318 - polyamine ABC transporter permease gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13150 YPD4_RS13155 YPD4_2228 YPD4_RS13155 2857380 2858645 - ABC transporter permease gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13155 YPD4_RS13160 YPD4_2229 YPD4_RS13160 2858692 2859720 - polyamine ABC transporter permease gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13160 YPD4_RS13165 YPD4_2230 YPD4_RS13165 2859773 2861062 - 4-aminobutyrate aminotransferase catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13165 YPD4_RS13170 YPD4_2231 YPD4_RS13170 2861244 2862749 + GntR family transcriptional regulator gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13170 YPD4_RS13175 YPD4_RS13175 YPD4_RS13175 2863132 2864218 + spermidine/putrescine ABC transporter ATP-binding protein gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13175 YPD4_RS13180 YPD4_2233 YPD4_RS13180 2864582 2865916 + multidrug resistance protein MdtA gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13180 YPD4_RS13185 YPD4_2234 YPD4_RS13185 2865916 2869074 + multidrug resistance protein MdtB Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13185 YPD4_RS13190 YPD4_2235 YPD4_RS13190 2869071 2872145 + multidrug resistance protein MdtC Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13190 YPD4_RS13195 YPD4_2236 YPD4_RS13195 2872179 2873576 + transporter gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13195 YPD4_RS13200 YPD4_2237 YPD4_RS13200 2873607 2874722 + signal transduction histidine kinase gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13200 YPD4_RS13205 YPD4_RS13205 YPD4_RS13205 2874734 2874991 + ATPase gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13205 YPD4_RS13210 YPD4_2238 YPD4_RS13210 2875001 2875720 + two-component system response regulator response regulator in two-component regulatory system with BaeS%3B regulator of RNA synthesis%2C flagellar biosynthesis%2C chemotaxis and transport gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13210 YPD4_RS13215 YPD4_2239 YPD4_RS13215 2875857 2876195 + hypothetical protein gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13215 YPD4_RS13220 YPD4_2240 YPD4_RS13220 2876470 2877864 + protease gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13220 YPD4_RS13225 YPD4_2241 YPD4_RS13225 2878500 2879390 + lipid kinase cytosolic protein with phosphatidylglycerol kinase activity%3B undetermined physiological role gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13225 YPD4_RS13230 YPD4_2242 YPD4_RS13230 2879677 2880186 - hypothetical protein gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13230 YPD4_RS13235 YPD4_2243 YPD4_RS13235 2880559 2881305 + hypothetical protein gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13235 YPD4_RS13240 YPD4_2244 YPD4_RS13240 2881367 2882167 - bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase catalyzes the formation hydroxymethylpyrimidine phosphate from hydroxymethylpyrimidine and the formation of of 4-amino-2-methyl-5-diphosphomethylpyrimidine from hydroxymethylpyrimidine phosphate gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13240 YPD4_RS13245 YPD4_2245 YPD4_RS13245 2882689 2883156 + membrane protein gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13245 YPD4_RS13250 YPD4_RS13250 YPD4_RS13250 2883215 2883493 + hypothetical protein gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13250 YPD4_RS13255 YPD4_2246 YPD4_RS13255 2883505 2884713 - transposase gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13255 YPD4_RS13260 YPD4_2247 YPD4_RS13260 2884804 2885439 + membrane protein gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13260 YPD4_RS13265 YPD4_2248 YPD4_RS13265 2885436 2885831 + membrane protein gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13265 YPD4_RS13270 YPD4_RS13270 YPD4_RS13270 2885895 2886290 + membrane protein gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13270 YPD4_RS13275 YPD4_RS13275 YPD4_RS13275 2886352 2886747 + membrane protein gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13275 YPD4_RS13280 YPD4_2249 YPD4_RS13280 2886811 2887209 + membrane protein gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13280 YPD4_RS13285 YPD4_2250 YPD4_RS13285 2887233 2887712 + hypothetical protein gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13285 YPD4_RS13290 YPD4_2251 YPD4_RS13290 2887872 2888330 - transposase gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13290 YPD4_RS13295 YPD4_RS13295 YPD4_RS13295 2888320 2888493 - transposase gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13295 YPD4_RS13300 YPD4_2252 guaA guaA 2888705 2890282 - GMP synthase [glutamine-hydrolyzing] contains glutamine-hydrolyzing domain and glutamine amidotransferase%3B GMP-binding domain%3B functions to produce GMP from XMP in the IMP pathway gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13300 YPD4_RS13305 YPD4_RS13305 YPD4_RS13305 2890265 2890390 + hypothetical protein gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13305 YPD4_RS13310 YPD4_2253 YPD4_RS13310 2890462 2891925 - inosine-5-monophosphate dehydrogenase gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13310 YPD4_RS13315 YPD4_2254 xseA xseA 2892095 2893474 + exodeoxyribonuclease 7 large subunit bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13315 YPD4_RS13320 YPD4_RS13320 YPD4_RS13320 2893575 2893799 - hypothetical protein gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13320 YPD4_RS13325 YPD4_2255 YPD4_RS13325 2893848 2894804 - transporter gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13325 YPD4_RS13330 YPD4_2256 YPD4_RS13330 2895151 2896638 - GTPase Der gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13330 YPD4_RS13335 YPD4_2257 YPD4_RS13335 2896786 2897967 - outer membrane protein assembly factor BamB gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13335 YPD4_RS13340 YPD4_2258 YPD4_RS13340 2897979 2898614 - membrane protein gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13340 YPD4_RS13345 YPD4_2259 hisS hisS 2898628 2899902 - histidine--tRNA ligase catalyzes a two-step reaction%2C first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class II aminoacyl-tRNA synthetase%3B forms homodimers%3B some organisms have a paralogous gene%2C hisZ%2C that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13345 YPD4_RS13350 YPD4_2260 YPD4_RS13350 2900111 2901238 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13350 YPD4_RS13355 YPD4_2261 YPD4_RS13355 2901300 2902337 - cytoskeleton protein RodZ gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13355 YPD4_RS13360 YPD4_RS13360 YPD4_RS13360 2902327 2903077 - pilus assembly protein PilW gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13360 YPD4_RS13365 YPD4_2263 YPD4_RS13365 2903231 2904427 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 23S rRNA m2A2503 methyltransferase%3B methylates the C2 position of the A2530 nucleotide in 23S rRNA%3B may be involved in antibiotic resistance gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13365 YPD4_RS13370 YPD4_2264 YPD4_RS13370 2904689 2905117 - nucleoside diphosphate kinase catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13370 YPD4_RS13375 YPD4_2265 YPD4_RS13375 2905444 2907864 - hypothetical protein gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13375 YPD4_RS13380 YPD4_RS13380 YPD4_RS13380 2908039 2908296 + hypothetical protein gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13380 YPD4_RS13385 YPD4_2266 YPD4_RS13385 2908811 2912956 + autotransporter gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13385 YPD4_RS13390 YPD4_2267 YPD4_RS13390 2913514 2916672 + pertactin gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13390 YPD4_RS13395 YPD4_2268 YPD4_RS13395 2916638 2916958 + autotransporter gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13395 YPD4_RS13400 YPD4_2269 YPD4_RS13400 2917296 2918249 - endopeptidase IV gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13400 YPD4_RS13405 YPD4_2270 YPD4_RS13405 2918328 2919626 - peptidase B catalyzes the removal of an N-terminal amino acid from a peptide or arylamide gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13405 YPD4_RS13410 YPD4_RS13410 YPD4_RS13410 2919766 2919966 - hypothetical protein gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13410 YPD4_RS13415 YPD4_2271 YPD4_RS13415 2919996 2920331 - (2Fe-2S) ferredoxin gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13415 YPD4_RS13420 YPD4_2272 hscA hscA 2920334 2922124 - chaperone protein HscA involved in the maturation of iron-sulfur cluster-containing proteins gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13420 YPD4_RS13425 YPD4_2273 hscB hscB 2922529 2923053 - co-chaperone protein HscB J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone%3B may function in biogenesis of iron-sulfur proteins gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13425 YPD4_RS13430 YPD4_2274 iscA iscA 2923164 2923487 - iron-binding protein forms iron-sulfur clusters of ferredoxin [2FE-2S]%3B binds iron in the presence of the thioredoxin reductase system%3B forms homodimers and tetramers%3B similar to SufA protein gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13430 YPD4_RS13435 YPD4_2275 YPD4_RS13435 2923757 2924143 - Fe-S cluster assembly scaffold IscU gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13435 YPD4_RS13440 YPD4_RS13440 YPD4_RS13440 2924174 2925404 - cysteine desulfurase catalyzes the removal of elemental sulfur from cysteine to produce alanine%3B involved in NAD biosynthesis gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13440 YPD4_RS13445 YPD4_2278 YPD4_RS13445 2925458 2925952 - Fe-S cluster assembly transcriptional regulator IscR gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13445 YPD4_RS13450 YPD4_2279 YPD4_RS13450 2926108 2926881 - tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ catalyzes the fromation of 2'O-methylated cytidine or 2'O-methylated uridine at position 32 in tRNA gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13450 YPD4_RS13455 YPD4_2280 YPD4_RS13455 2927000 2927803 + inositol monophosphatase gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13455 YPD4_RS13460 YPD4_2281 YPD4_RS13460 2928007 2928465 + transposase gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13460 YPD4_RS13465 YPD4_2282 YPD4_RS13465 2928612 2929634 - nickel transporter gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13465 YPD4_RS13470 YPD4_2283 YPD4_RS13470 2929625 2930299 - membrane protein gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13470 YPD4_RS13475 YPD4_2284 YPD4_RS13475 2930441 2931802 + stationary phase inducible protein CsiE gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13475 YPD4_RS13480 YPD4_RS13480 YPD4_RS13480 2931799 2932957 - 3-phenylpropionic acid transporter transporter of 3-phenylpropionate across the inner membrane%3B member of the major facilitator superfamily of transporters gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13480 YPD4_RS13485 YPD4_2287 YPD4_RS13485 2933309 2933848 - attachment protein gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13485 YPD4_RS13490 YPD4_RS13490 YPD4_RS13490 2933967 2934149 - membrane protein gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13490 YPD4_RS13495 YPD4_2288 YPD4_RS13495 2934301 2935554 - serine hydroxymethyltransferase gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13495 YPD4_RS13500 YPD4_2289 YPD4_RS13500 2936095 2937285 + flavohemoprotein flavohemoprotein%3B catalyzes the formation of nitrate from nitric oxide%3B can also catalyze the reduction of dihydropteridine gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13500 YPD4_RS13505 YPD4_2290 YPD4_RS13505 2937749 2938312 + GntR family transcriptional regulator gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13505 YPD4_RS13510 YPD4_2291 YPD4_RS13510 2938278 2938649 + hypothetical protein gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13510 YPD4_RS13515 YPD4_2292 YPD4_RS13515 2938818 2939156 - nitrogen regulatory protein P-II indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13515 YPD4_RS13520 YPD4_2293 YPD4_RS13520 2939171 2940793 - NAD synthetase NH(3)-dependent%3B catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13520 YPD4_RS13525 YPD4_2294 YPD4_RS13525 2940953 2942290 - transcriptional regulator with GlrK is part of a two-component signal transduction system regulating glmY gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13525 YPD4_RS13530 YPD4_2295 YPD4_RS13530 2942253 2943320 - membrane protein gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13530 YPD4_RS13535 YPD4_2296 YPD4_RS13535 2943324 2944760 - two-component system sensor histidine kinase part of the GlrKR two-component signal transduction system involved in the regulation of glmY gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13535 YPD4_RS13540 YPD4_2297 YPD4_RS13540 2944981 2945439 - transposase gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13540 YPD4_RS13545 YPD4_RS13545 YPD4_RS13545 2945429 2945647 - transposase gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13545 YPD4_RS13550 YPD4_2298 YPD4_RS13550 2946666 2947226 + hypothetical protein gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13550 YPD4_RS13555 YPD4_2299 YPD4_RS13555 2947678 2948127 + hypothetical protein gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13555 YPD4_RS13560 YPD4_2300 YPD4_RS13560 2948539 2952429 - phosphoribosylformylglycinamidine synthase catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13560 YPD4_RS13565 YPD4_2301 YPD4_RS13565 2952745 2954205 + murein transglycosylase gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13565 YPD4_RS13570 YPD4_2302 YPD4_RS13570 2954314 2954916 - adenosine deaminase gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13570 YPD4_RS13575 YPD4_2303 YPD4_RS13575 2954987 2955682 - hypothetical protein gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13575 YPD4_RS13580 YPD4_2304 murQ murQ 2955909 2956796 - N-acetylmuramic acid 6-phosphate etherase catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13580 YPD4_RS13585 YPD4_2305 YPD4_RS13585 2957004 2957843 + transcriptional regulator gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13585 YPD4_RS13590 YPD4_RS13590 YPD4_RS13590 2958005 2958265 + ferredoxin gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13590 YPD4_RS13595 YPD4_2306 YPD4_RS13595 2958421 2958879 - transposase gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13595 YPD4_RS13600 YPD4_RS13600 YPD4_RS13600 2958869 2959024 - invasin gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13600 YPD4_RS13605 YPD4_2307 acpS acpS 2959081 2959461 - holo-ACP synthase Catalyzes the formation of holo-ACP%2C which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13605 YPD4_RS13610 YPD4_2308 YPD4_RS13610 2959461 2960192 - pyridoxine 5'-phosphate synthase involved in the de novo synthesis of pyridoxine (Vitamin B6) gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13610 YPD4_RS13615 YPD4_2309 YPD4_RS13615 2960382 2960951 - ATPase AAA gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13615 YPD4_RS13620 YPD4_RS13620 YPD4_RS13620 2960929 2961162 - transposase gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13620 YPD4_RS13625 YPD4_2310 YPD4_RS13625 2961162 2962184 - transposase gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13625 YPD4_RS13630 YPD4_2311 recO recO 2962311 2963036 - DNA repair protein RecO involved in DNA repair and RecFOR pathway recombination%3B RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13630 YPD4_RS13635 YPD4_2312 YPD4_RS13635 2963046 2963957 - GTPase Era gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13635 YPD4_RS13640 YPD4_2313 rnc rnc 2963954 2964634 - ribonuclease 3 cytoplasmic enzyme involved in processing rRNA and some mRNAs%3B substrates typically have dsRNA regions%3B forms a homodimer%3B have N-terminal nuclease and C-terminal RNA-binding domains%3B requires magnesium as preferred ion for activity gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13640 YPD4_RS13645 YPD4_2314 YPD4_RS13645 2964986 2965984 - signal peptidase I catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13645 YPD4_RS13650 YPD4_2315 YPD4_RS13650 2965994 2967792 - elongation factor 4 gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13650 YPD4_RS13655 YPD4_2316 YPD4_RS13655 2968292 2969146 + membrane protein gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13655 YPD4_RS13660 YPD4_2317 YPD4_RS13660 2969167 2969622 - SoxR reducing system protein RseC gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13660 YPD4_RS13665 YPD4_2318 rseB rseB 2969619 2970575 - anti-sigma E factor periplasmic protein%3B interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13665 YPD4_RS13670 YPD4_2319 YPD4_RS13670 2970575 2971231 - anti-RNA polymerase sigma factor SigE gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13670 YPD4_RS13675 YPD4_2320 YPD4_RS13675 2971257 2971832 - RNA polymerase sigma factor AlgU Member of the extracytoplasmic function sigma factors which are active under specific conditions%3B binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription%3B this sigma factor is involved in heat shock and oxidative stress response gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13675 YPD4_RS13680 YPD4_2321 YPD4_RS13680 2972020 2973657 + L-aspartate oxidase catalyzes the formation of oxaloacetate from L-aspartate gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13680 YPD4_RS13685 YPD4_2322 YPD4_RS13685 2973940 2974686 - tRNA1(Val) (adenine(37)-N6)-methyltransferase gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13685 YPD4_RS13690 YPD4_2323 YPD4_RS13690 2974938 2976263 + ATP-dependent RNA helicase SrmB facilitates an early step in the assembly of the 50S subunit of the ribosome gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13690 YPD4_RS13695 YPD4_2324 YPD4_RS13695 2976394 2977050 - hypothetical protein gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13695 YPD4_RS13700 YPD4_RS13700 YPD4_RS13700 2977037 2977135 - hypothetical protein gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13700 YPD4_RS13705 YPD4_2325 YPD4_RS13705 2977128 2977889 - phospholipase A gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13705 YPD4_RS13710 YPD4_2326 YPD4_RS13710 2978270 2978653 - autonomous glycyl radical cofactor GrcA stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13710 YPD4_RS13715 YPD4_2327 YPD4_RS13715 2979006 2979692 + uracil-DNA glycosylase Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13715 YPD4_RS13720 YPD4_2328 YPD4_RS13720 2979783 2980430 - pyrrolidone-carboxylate peptidase gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13720 YPD4_RS13725 YPD4_2329 YPD4_RS13725 2980440 2981459 - membrane protein gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13725 YPD4_RS13730 YPD4_2330 YPD4_RS13730 2981456 2982187 - membrane protein gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13730 YPD4_RS13735 YPD4_2331 YPD4_RS13735 2982272 2983009 - LamB/YcsF family protein gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13735 YPD4_RS13740 YPD4_2332 YPD4_RS13740 2983006 2983956 - hypothetical protein gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13740 YPD4_RS13745 YPD4_RS13745 YPD4_RS13745 2983950 2984606 - hypothetical protein gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13745 YPD4_RS13750 YPD4_2334 YPD4_RS13750 2985225 2985968 - Nif3-like dinuclear metal center hexameric protein gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13750 YPD4_RS13755 YPD4_2335 YPD4_RS13755 2986111 2987148 - 3'%2C5'-cyclic-nucleotide phosphodiesterase gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13755 YPD4_RS13760 YPD4_2336 YPD4_RS13760 2987139 2988602 - deoxyribodipyrimidine photolyase UV-induced DNA repair%3B converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers%3B light dependent gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13760 YPD4_RS13765 YPD4_2337 YPD4_RS13765 2988732 2989214 - hypothetical protein gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13765 YPD4_RS13770 YPD4_RS13770 YPD4_RS13770 2989553 2989759 - membrane protein gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13770 YPD4_RS13775 YPD4_RS13775 YPD4_RS13775 2989925 2990167 + hypothetical protein gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13775 YPD4_RS13780 YPD4_RS13780 kdpF kdpF 2990164 2990253 + potassium transporter TrkA one of the components of the high-affinity ATP-driven potassium transport (or KDP) system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13780 YPD4_RS13785 YPD4_2338 YPD4_RS13785 2990254 2991942 + potassium-transporting ATPase A chain catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13785 YPD4_RS13790 YPD4_2339 YPD4_RS13790 2992036 2994102 + potassium-transporting ATPase B chain One of the components of the high-affinity ATP-driven potassium transport (or KDP) system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13790 YPD4_RS13795 YPD4_2340 YPD4_RS13795 2994266 2994916 + potassium-transporting ATPase subunit C One of the components of the high-affinity ATP-driven potassium transport (or KDP)system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13795 YPD4_RS13800 YPD4_2341 YPD4_RS13800 2994926 2997652 + two-component system sensor histidine kinase KdpD sensory histidine kinase in two-component regulatory system with KdpE%3B signal sensing protein gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13800 YPD4_RS13805 YPD4_2342 YPD4_RS13805 2997888 2998574 + two-component system response regulator response regulator in two-component regulatory system with KdpD%3B regulates the kdp operon involved in potassium transport gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13805 YPD4_RS13810 YPD4_2343 YPD4_RS13810 2998669 2999097 + membrane protein gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13810 YPD4_RS13815 YPD4_RS13815 YPD4_RS13815 2999225 2999467 - hypothetical protein gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13815 YPD4_RS13820 YPD4_RS13820 YPD4_RS13820 2999510 2999623 - hypothetical protein gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13820 YPD4_RS13825 YPD4_2344 YPD4_RS13825 2999841 3001484 - phosphoglucomutase catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13825 YPD4_RS13830 YPD4_2345 YPD4_RS13830 3001557 3002084 - N-carbamyl-L-amino acid amidohydrolase negative modulator of the initiation of chromosome replication gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13830 YPD4_RS13835 YPD4_RS13835 YPD4_RS13835 3002579 3002947 + hypothetical protein gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13835 YPD4_RS13840 YPD4_RS13840 YPD4_RS13840 3003059 3003235 + membrane protein gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13840 YPD4_RS13845 YPD4_2346 YPD4_RS13845 3003242 3004003 - chitooligosaccharide deacetylase gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13845 YPD4_RS13850 YPD4_2347 YPD4_RS13850 3004055 3004885 - transcriptional regulator represses the celABCDF-ydjC operon involved in carbon uptake gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13850 YPD4_RS13855 YPD4_2348 YPD4_RS13855 3004934 3005281 - PTS N'-diacetylchitobiose transporter subunit IIA catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13855 YPD4_RS13860 YPD4_2349 YPD4_RS13860 3005448 3006809 - PTS N'-diacetylchitobiose transporter subunit IIC catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13860 YPD4_RS13865 YPD4_2350 YPD4_RS13865 3006820 3007137 - PTS N'-diacetylchitobiose transporter subunit IIB catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13865 YPD4_RS13870 YPD4_RS13870 YPD4_RS13870 3007910 3008089 + hypothetical protein gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13870 YPD4_RS13875 YPD4_2351 YPD4_RS13875 3008178 3008558 + chromosome condensation protein CrcB gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13875 YPD4_RS13880 YPD4_2352 ccrB ccrB 3008574 3008978 + camphor resistance protein CrcB may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13880 YPD4_RS13885 YPD4_2353 YPD4_RS13885 3009076 3010251 - voltage-gated potassium channel gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13885 YPD4_RS13890 YPD4_RS13890 YPD4_RS13890 3010640 3010870 - hypothetical protein gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13890 YPD4_RS13895 YPD4_2354 YPD4_RS13895 3010869 3011198 + acid-resistance protein gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13895 YPD4_RS13900 YPD4_2355 YPD4_RS13900 3011367 3012425 - nickel transporter gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13900 YPD4_RS13905 YPD4_2356 YPD4_RS13905 3012574 3013566 - urea transporter gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13905 YPD4_RS13910 YPD4_2357 YPD4_RS13910 3013891 3014724 - urease accessory protein UreD gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13910 YPD4_RS13915 YPD4_2358 YPD4_RS13915 3014721 3015383 - urease accessory protein UreG gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13915 YPD4_RS13920 YPD4_2359 YPD4_RS13920 3015510 3016196 - urease accessory protein UreF gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13920 YPD4_RS13925 YPD4_2360 ureE ureE 3016218 3016913 - urease accessory protein UreE involved in the assembly of the urease metallocenter%3B possible nickel donor gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13925 YPD4_RS13930 YPD4_2361 ureC ureC 3017209 3018927 - urease subunit alpha ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide%3B in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa%3B the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13930 YPD4_RS13935 YPD4_2362 ureB ureB 3019017 3019451 - urease subunit beta ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide%3B in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa%3B the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta) gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13935 YPD4_RS13940 YPD4_2363 YPD4_RS13940 3019504 3019806 - urease subunit gamma gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13940 YPD4_RS13945 YPD4_2364 YPD4_RS13945 3021005 3021670 - nickel ABC transporter ATP-binding protein gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13945 YPD4_RS13950 YPD4_2365 YPD4_RS13950 3021663 3022469 - peptide ABC transporter ATP-binding protein gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13950 YPD4_RS13955 YPD4_2366 YPD4_RS13955 3022469 3023275 - peptide ABC transporter permease gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13955 YPD4_RS13960 YPD4_2367 YPD4_RS13960 3023272 3024255 - peptide ABC transporter permease gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13960 YPD4_RS13965 YPD4_2368 YPD4_RS13965 3024240 3025817 - solute-binding protein gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13965 YPD4_RS13970 YPD4_RS13970 YPD4_RS13970 3026659 3026872 - cold-shock protein gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13970 YPD4_RS13975 YPD4_2369 YPD4_RS13975 3027381 3027719 + hypothetical protein gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13975 YPD4_RS13980 YPD4_2370 YPD4_RS13980 3027884 3028333 + membrane protein gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13980 YPD4_RS13985 YPD4_2371 YPD4_RS13985 3028431 3028766 - hypothetical protein gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13985 YPD4_RS13990 YPD4_2372 YPD4_RS13990 3029244 3029609 - acid shock protein gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13990 YPD4_RS13995 YPD4_RS13995 YPD4_RS13995 3030130 3030366 + glutaredoxin gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS13995 YPD4_RS14000 YPD4_2373 nrdI nrdI 3030380 3030784 + protein NrdI in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14000 YPD4_RS14005 YPD4_2375 YPD4_RS14005 3030766 3032917 + ribonucleotide-diphosphate reductase subunit alpha Catalyzes the rate-limiting step in dNTP synthesis gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14005 YPD4_RS14010 YPD4_2376 YPD4_RS14010 3033024 3033995 + ribonucleotide-diphosphate reductase subunit beta B2 or R2 protein%3B type 1b enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdE gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14010 YPD4_RS14015 YPD4_2377 YPD4_RS14015 3034671 3035870 + glycine/betaine ABC transporter ATP-binding protein with ProWX is involved in the high-affinity uptake of glycine betaine gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14015 YPD4_RS14020 YPD4_2378 YPD4_RS14020 3035863 3037029 + glycine/betaine ABC transporter permease with ProVX is involved in the high-affinity uptake of glycine betaine gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14020 YPD4_RS14025 YPD4_2379 proX proX 3037077 3038081 + glycine/betaine ABC transporter substrate-binding protein with ProVW%2C part of the high-affinity transport system for the osmoprotectant glycine betaine gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14025 YPD4_RS14030 YPD4_2380 YPD4_RS14030 3038311 3039048 - allantoinase gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14030 YPD4_RS14035 YPD4_2381 YPD4_RS14035 3039135 3040157 + transposase gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14035 YPD4_RS14040 YPD4_2382 YPD4_RS14040 3040157 3040936 + transposase gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14040 YPD4_RS14045 YPD4_2383 YPD4_RS14045 3040949 3041413 + hypothetical protein gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14045 YPD4_RS14050 YPD4_RS14050 YPD4_RS14050 3041483 3041746 + transposase gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14050 YPD4_RS14055 YPD4_RS14055 YPD4_RS14055 3041829 3042014 + hypothetical protein gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14055 YPD4_RS14060 YPD4_RS14060 YPD4_RS14060 3042177 3042428 - hypothetical protein gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14060 YPD4_RS14065 YPD4_2384 YPD4_RS14065 3043139 3043906 + acyl-CoA esterase gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14065 YPD4_RS14070 YPD4_RS14070 YPD4_RS14070 3044058 3044183 - hypothetical protein gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14070 YPD4_RS14075 YPD4_RS14075 YPD4_RS14075 3044238 3044525 + LexA regulated protein gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14075 YPD4_RS14080 YPD4_RS14080 YPD4_RS14080 3044924 3045452 + flavodoxin FldA An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14080 YPD4_RS14085 YPD4_2386 fur fur 3045819 3046265 + ferric uptake regulation protein negatively regulates a number of operons that encode enzymes involved in iron transport%3B activated by manganese%3B forms a homodimer gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14085 YPD4_RS14090 YPD4_RS14090 YPD4_RS14090 3046706 3049370 - beta-N-acetylhexosaminidase gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14090 YPD4_RS14095 YPD4_2389 chiP chiP 3049698 3051119 - porin outer membrane porin involved in the transport of chitooligosaccharides gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14095 YPD4_RS14100 YPD4_2390 YPD4_RS14100 3051825 3053492 - glutamine--tRNA ligase catalyzes a two-step reaction%2C first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14100 YPD4_RS14105 YPD4_2391 YPD4_RS14105 3053694 3054152 - transposase gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14105 YPD4_RS14110 YPD4_RS14110 YPD4_RS14110 3054417 3056450 - PTS N-acetyl glucosamine transporter subunit IIABC phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14110 YPD4_RS14115 YPD4_2394 nagB nagB 3056850 3057650 + glucosamine-6-phosphate deaminase catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14115 YPD4_RS14120 YPD4_2395 nagA nagA 3057670 3058815 + N-acetylglucosamine-6-phosphate deacetylase catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14120 YPD4_RS14125 YPD4_2396 YPD4_RS14125 3058832 3060058 + transcriptional regulator regulates the synthesis of glucosamine and N-acetylglucosamine by acting as a repressor of the nagEBACD operon and both a repressor and activator of the glmSU operon gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14125 YPD4_RS14130 YPD4_2397 YPD4_RS14130 3060131 3060883 + UMP phosphatase gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14130 YPD4_RS14135 YPD4_2398 asnB asnB 3061238 3062902 + asparagine synthetase B functions in asparagine biosynthesis%3B converts glutamine%2C aspartate%2C ATP%2C and water to glutamate%2C asparagine%2C pyrophosphate and AMP gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14135 YPD4_RS14140 YPD4_RS14140 YPD4_RS14140 3062951 3063088 - hypothetical protein gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14140 YPD4_RS14145 YPD4_t33 YPD4_RS14145 3063360 3063436 + tRNA-Met tRNA gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14145 YPD4_RS14150 YPD4_t34 YPD4_RS14150 3063444 3063528 + tRNA-Leu tRNA gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14150 YPD4_RS14155 YPD4_t35 YPD4_RS14155 3063558 3063632 + tRNA-Gln tRNA gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14155 YPD4_RS14160 YPD4_t36 YPD4_RS14160 3063716 3063790 + tRNA-Gln tRNA gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14160 YPD4_RS14165 YPD4_t37 YPD4_RS14165 3063823 3063899 + tRNA-Met tRNA gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14165 YPD4_RS14170 YPD4_t38 YPD4_RS14170 3063905 3063979 + tRNA-Gln tRNA gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14170 YPD4_RS14175 YPD4_2399 ubiF ubiF 3064373 3065554 - 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1%2C4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol%3B functions in the biosynthesis of ubiquinone or coenzyme Q gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14175 YPD4_RS14180 YPD4_2400 YPD4_RS14180 3065796 3067220 + tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14180 YPD4_RS14185 YPD4_2401 YPD4_RS14185 3067565 3068620 + nucleoside triphosphate hydrolase gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14185 YPD4_RS14190 YPD4_2402 YPD4_RS14190 3068617 3069090 + endoribonuclease YbeY gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14190 YPD4_RS14195 YPD4_2403 YPD4_RS14195 3069208 3070086 + cobalt transporter involved in the transport of magnesium and cobalt ions gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14195 YPD4_RS14200 YPD4_2404 lnt lnt 3070094 3071641 + apolipoprotein N-acyltransferase Transfers the fatty acyl group on membrane lipoproteins gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14200 YPD4_RS14205 YPD4_2405 YPD4_RS14205 3072406 3073323 + amino acid transporter gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14205 YPD4_RS14210 YPD4_2406 YPD4_RS14210 3073497 3074237 + glutamate/aspartate ABC transporter permease GltJ with GltIKL is involved in the transport of glutamate and aspartate gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14210 YPD4_RS14215 YPD4_2407 YPD4_RS14215 3074237 3074912 + amino acid ABC transporter permease gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14215 YPD4_RS14220 YPD4_2408 artP artP 3074912 3075637 + arginine ABC transporter ATP-binding protein With ArtMQJI transports arginine across the inner membrane gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14220 YPD4_RS14225 YPD4_2409 YPD4_RS14225 3075771 3076253 - hypothetical protein gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14225 YPD4_RS14230 YPD4_2410 leuS leuS 3076514 3079096 + leucine--tRNA ligase leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA(Leu) recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14230 YPD4_RS14235 YPD4_2411 YPD4_RS14235 3079111 3079734 + hypothetical protein rare lipoprotein B%3B involved in the assembly of LPS in the outer membrane gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14235 YPD4_RS14240 YPD4_RS14240 holA holA 3079731 3080764 + DNA polymerase III subunit delta required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14240 YPD4_RS14245 YPD4_2413 YPD4_RS14245 3080754 3081416 + nicotinate-nucleotide adenylyltransferase gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14245 YPD4_RS14250 YPD4_2414 YPD4_RS14250 3081640 3081957 + ribosome silencing factor RsfS gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14250 YPD4_RS14255 YPD4_2415 YPD4_RS14255 3081961 3082431 + ribosomal RNA large subunit methyltransferase H gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14255 YPD4_RS14260 YPD4_2416 YPD4_RS14260 3082513 3084408 + penicillin-binding protein 2 gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14260 YPD4_RS14265 YPD4_2417 YPD4_RS14265 3084593 3085705 + cell wall shape-determining protein gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14265 YPD4_RS14270 YPD4_RS14270 YPD4_RS14270 3085715 3086796 + hypothetical protein septal ring protein%2C suppressor of prc%2C minor lipoprotein gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14270 YPD4_RS14275 YPD4_2420 YPD4_RS14275 3087199 3088401 + D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 5%3B removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14275 YPD4_RS14280 YPD4_RS14280 YPD4_RS14280 3088600 3088863 + hypothetical protein gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14280 YPD4_RS14285 YPD4_2421 YPD4_RS14285 3089075 3089776 + octanoyltransferase lipoyl/octanoyltransferase%3B catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14285 YPD4_RS14290 YPD4_2422 YPD4_RS14290 3089969 3090934 + lipoyl synthase catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14290 YPD4_RS14295 YPD4_RS14295 YPD4_RS14295 3091115 3091372 - sec-independent protein translocase tatE gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14295 YPD4_RS14300 YPD4_RS14300 YPD4_RS14300 3091427 3091579 - hypothetical protein gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14300 YPD4_RS14305 YPD4_2423 YPD4_RS14305 3091939 3092322 + camphor resistance protein CrcB camphor resistance protein CrcB%3B may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14305 YPD4_RS14310 YPD4_RS14310 YPD4_RS14310 3092745 3092954 - cold-shock protein gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14310 YPD4_RS14315 YPD4_2424 YPD4_RS14315 3093233 3093712 + cold-shock protein gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14315 YPD4_RS14320 YPD4_2425 YPD4_RS14320 3094022 3094612 - LuxR family transcriptional regulator gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14320 YPD4_RS14325 YPD4_2426 YPD4_RS14325 3095062 3096015 + hypothetical protein gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14325 YPD4_RS14330 YPD4_RS14330 YPD4_RS14330 3096210 3096392 + hypothetical protein gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14330 YPD4_RS14335 YPD4_RS14335 YPD4_RS14335 3096412 3096606 - glycogen synthase gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14335 YPD4_RS14340 YPD4_RS14340 YPD4_RS14340 3097049 3097336 + antibiotic biosynthesis monooxygenase gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14340 YPD4_RS14345 YPD4_2427 YPD4_RS14345 3097352 3099142 - metal ABC transporter permease gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14345 YPD4_RS14350 YPD4_RS14350 YPD4_RS14350 3099350 3099553 - membrane protein gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14350 YPD4_RS14355 YPD4_2429 YPD4_RS14355 3099712 3100527 - 5-deoxy-glucuronate isomerase gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14355 YPD4_RS14360 YPD4_2430 YPD4_RS14360 3100537 3101457 - myo-inosose-2 dehydratase gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14360 YPD4_RS14365 YPD4_2431 YPD4_RS14365 3101610 3103487 - 5-dehydro-2-deoxygluconokinase gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14365 YPD4_RS14370 YPD4_2432 YPD4_RS14370 3103612 3104745 - myo-inositol 2-dehydrogenase gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14370 YPD4_RS14375 YPD4_2433 YPD4_RS14375 3104769 3105797 - sugar ABC transporter permease gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14375 YPD4_RS14380 YPD4_2434 YPD4_RS14380 3105809 3107356 - asparaginase with RbsBCD acts to import ribose into the cell%3B RbsA contains 2 ATP-binding domain gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14380 YPD4_RS14385 YPD4_2435 YPD4_RS14385 3107405 3108334 - sugar ABC transporter substrate-binding protein gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14385 YPD4_RS14390 YPD4_RS14390 YPD4_RS14390 3108460 3109445 - inositol 2-dehydrogenase gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14390 YPD4_RS14395 YPD4_2438 YPD4_RS14395 3109739 3111664 - 3D-(3%2C5/4)-trihydroxycyclohexane-1%2C2-dione hydrolase gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14395 YPD4_RS14400 YPD4_2439 YPD4_RS14400 3111699 3113225 - aldehyde dehydrogenase gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14400 YPD4_RS14405 YPD4_2440 YPD4_RS14405 3113531 3114385 + (Fe-S)-cluster assembly protein gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14405 YPD4_RS14410 YPD4_2441 YPD4_RS14410 3115019 3115567 + membrane protein gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14410 YPD4_RS14415 YPD4_2442 YPD4_RS14415 3115974 3121952 + hypothetical protein gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14415 YPD4_RS14420 YPD4_2443 YPD4_RS14420 3122009 3122887 + transglycosylase gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14420 YPD4_RS14425 YPD4_2444 YPD4_RS14425 3122921 3124129 + transposase gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14425 YPD4_RS14430 YPD4_RS14430 YPD4_RS14430 3124151 3124405 - PTS ascorbate transporter subunit IIB gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14430 YPD4_RS14435 YPD4_2445 cmtB cmtB 3124574 3125017 - PTS ascorbate transporter subunit IIA TolM%3B with CmtA (IIBC)%2C CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system%2C which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli%3B cytoplasmic protein gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14435 YPD4_RS14440 YPD4_2446 YPD4_RS14440 3125384 3126418 + LacI family transcriptional regulator gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14440 YPD4_RS14445 YPD4_2447 YPD4_RS14445 3126684 3128822 - phosphate acetyltransferase catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate%3B when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14445 YPD4_RS14450 YPD4_2448 YPD4_RS14450 3129005 3130207 - acetate kinase AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation%3B utilizes magnesium and ATP%3B also involved in conversion of acetate to aceyl-CoA%3B also known to act on propionate gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14450 YPD4_RS14455 YPD4_RS14455 YPD4_RS14455 3130197 3130388 - hypothetical protein gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14455 YPD4_RS14460 YPD4_2449 YPD4_RS14460 3130629 3131084 + hypothetical protein gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14460 YPD4_RS14465 YPD4_2450 YPD4_RS14465 3131408 3131902 + hypothetical protein gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14465 YPD4_RS14470 YPD4_2451 YPD4_RS14470 3132067 3132723 + phosphatase gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14470 YPD4_RS14475 YPD4_2452 YPD4_RS14475 3133015 3134847 + citrate transporter gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14475 YPD4_RS14480 YPD4_RS14480 YPD4_RS14480 3134952 3135143 + hypothetical protein gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14480 YPD4_RS14485 YPD4_2453 YPD4_RS14485 3135190 3135783 - 5'-nucleotidase gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14485 YPD4_RS14490 YPD4_2454 YPD4_RS14490 3135934 3137148 - aminotransferase broad specificity%3B family IV%3B in Corynebacterium glutamicum this protein can use glutamate%2C 2-aminobutyrate%2C and aspartate as amino donors and pyruvate as the acceptor gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14490 YPD4_RS14495 YPD4_RS14495 YPD4_RS14495 3137281 3137553 + hypothetical protein gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14495 YPD4_RS14500 YPD4_2455 YPD4_RS14500 3138004 3138936 + LysR family transcriptional regulator gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14500 YPD4_RS14505 YPD4_2456 YPD4_RS14505 3139614 3140114 + NADH-quinone oxidoreductase subunit A gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14505 YPD4_RS14510 YPD4_2457 YPD4_RS14510 3140216 3140893 + NADH-quinone oxidoreductase subunit B gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14510 YPD4_RS14515 YPD4_2458 YPD4_RS14515 3141034 3142830 + NADH-quinone oxidoreductase subunit C/D NuoCD%3B NDH-1 shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B subunits NuoCD%2C E%2C F%2C and G constitute the peripheral sector of the complex%3B in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14515 YPD4_RS14520 YPD4_2459 YPD4_RS14520 3142833 3143396 + NADH dehydrogenase subunit E Catalyzes the transfer of electrons from NADH to quinone gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14520 YPD4_RS14525 YPD4_2460 YPD4_RS14525 3143393 3144778 + NADH dehydrogenase subunit F part of NADH-ubiquinone oxidoreductase complex I%3B shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B NuoF is part of the soluble NADH dehydrogenase fragment%2C which represents the electron input part of NADH dehydrogenase gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14525 YPD4_RS14530 YPD4_2461 YPD4_RS14530 3144865 3147609 + NADH-quinone oxidoreductase subunit G Catalyzes the transfer of electrons from NADH to quinone gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14530 YPD4_RS14535 YPD4_2462 YPD4_RS14535 3147606 3148583 + NADH-quinone oxidoreductase subunit H gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14535 YPD4_RS14540 YPD4_2463 YPD4_RS14540 3148598 3149140 + NADH-quinone oxidoreductase subunit I gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14540 YPD4_RS14545 YPD4_2464 YPD4_RS14545 3149153 3149698 + NADH:ubiquinone oxidoreductase subunit J Catalyzes the transfer of electrons from NADH to quinone gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14545 YPD4_RS14550 YPD4_2465 YPD4_RS14550 3149695 3149997 + NADH-quinone oxidoreductase subunit K gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14550 YPD4_RS14555 YPD4_2466 YPD4_RS14555 3149994 3151838 + NADH:ubiquinone oxidoreductase subunit L Catalyzes the transfer of electrons from NADH to ubiquinone gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14555 YPD4_RS14560 YPD4_2467 YPD4_RS14560 3151878 3153410 + NADH:ubiquinone oxidoreductase subunit M gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14560 YPD4_RS14565 YPD4_2468 YPD4_RS14565 3153417 3154880 + NADH-quinone oxidoreductase subunit N Catalyzes the transfer of electrons from NADH to quinone gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14565 YPD4_RS14570 YPD4_2469 YPD4_RS14570 3155116 3156306 + hypothetical protein gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14570 YPD4_RS14575 YPD4_2470 YPD4_RS14575 3156658 3157125 - hypothetical protein gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14575 YPD4_RS14580 YPD4_2471 idnK idnK 3157203 3157739 - D-gluconate kinase gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14580 YPD4_RS14585 YPD4_2472 YPD4_RS14585 3157788 3158552 - gluconate 5-dehydrogenase Involved in the nonphosphorylative%2C ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14585 YPD4_RS14590 YPD4_2473 YPD4_RS14590 3159311 3160594 - lipoprotein gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14590 YPD4_RS14595 YPD4_2474 YPD4_RS14595 3161063 3162055 + LacI family transcriptional regulator gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14595 YPD4_RS14600 YPD4_RS14600 YPD4_RS14600 3162380 3162502 + hypothetical protein gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14600 YPD4_RS14605 YPD4_2475 YPD4_RS14605 3162521 3163471 + dihydrofolate reductase gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14605 YPD4_RS14610 YPD4_2476 YPD4_RS14610 3164017 3165333 + 2-ketogluconate transporter gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14610 YPD4_RS14615 YPD4_2477 YPD4_RS14615 3165363 3165878 + hypothetical protein gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14615 YPD4_RS14620 YPD4_2478 YPD4_RS14620 3165888 3167759 + phosphogluconate dehydratase catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14620 YPD4_RS14625 YPD4_RS14625 YPD4_RS14625 3167825 3168037 + hypothetical protein gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14625 YPD4_RS14630 YPD4_RS14630 YPD4_RS14630 3167978 3168121 - membrane protein gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14630 YPD4_RS14635 YPD4_2479 YPD4_RS14635 3168685 3168993 + membrane protein gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14635 YPD4_RS14640 YPD4_2480 YPD4_RS14640 3169548 3170192 + protein RhiA gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14640 YPD4_RS14645 YPD4_2481 YPD4_RS14645 3170720 3172087 + menaquinone-specific isochorismate synthase gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14645 YPD4_RS14650 YPD4_2482 YPD4_RS14650 3172315 3174018 + 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14650 YPD4_RS14655 YPD4_2483 YPD4_RS14655 3174015 3174833 + 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14655 YPD4_RS14660 YPD4_RS14660 YPD4_RS14660 3174847 3175705 + dihydroxynaphthoic acid synthetase catalyzes the formation of 1%2C4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14660 YPD4_RS14665 YPD4_2485 YPD4_RS14665 3175705 3176676 + o-succinylbenzoate synthase catalyzes the dehydration of 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14665 YPD4_RS14670 YPD4_2486 YPD4_RS14670 3176664 3178079 + O-succinylbenzoic acid--CoA ligase gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14670 YPD4_RS14675 YPD4_2487 YPD4_RS14675 3178145 3179104 + glycosyl hydrolase gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14675 YPD4_RS14680 YPD4_RS14680 YPD4_RS14680 3179486 3179746 - hypothetical protein gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14680 YPD4_RS14685 YPD4_2488 YPD4_RS14685 3180034 3181044 + ribosomal RNA large subunit methyltransferase F gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14685 YPD4_RS14690 YPD4_2489 YPD4_RS14690 3181906 3182685 - transposase gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14690 YPD4_RS14695 YPD4_2490 YPD4_RS14695 3182685 3183707 - transposase gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14695 YPD4_RS14700 YPD4_2491 YPD4_RS14700 3183801 3184694 + LysR family transcriptional regulator gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14700 YPD4_RS14705 YPD4_2492 YPD4_RS14705 3184749 3185738 - aldo/keto reductase gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14705 YPD4_RS14710 YPD4_2493 YPD4_RS14710 3185764 3186615 - 2%2C5-diketo-D-gluconic acid reductase gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14710 YPD4_RS14715 YPD4_RS14715 YPD4_RS14715 3186806 3186931 + hypothetical protein gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14715 YPD4_RS14720 YPD4_RS14720 YPD4_RS14720 3186928 3187071 + hypothetical protein gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14720 YPD4_RS14725 YPD4_2494 YPD4_RS14725 3187088 3188716 + hypothetical protein gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14725 YPD4_RS14730 YPD4_2495 YPD4_RS14730 3188795 3191176 - beta-glucosidase gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14730 YPD4_RS14735 YPD4_2496 YPD4_RS14735 3191335 3191865 - membrane protein gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14735 YPD4_RS14740 YPD4_2497 YPD4_RS14740 3191858 3194065 - membrane protein gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14740 YPD4_RS14745 YPD4_2498 YPD4_RS14745 3194517 3195725 + transposase gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14745 YPD4_RS14750 YPD4_2499 YPD4_RS14750 3195804 3196112 + hypothetical protein gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14750 YPD4_RS14755 YPD4_2500 YPD4_RS14755 3196127 3196708 - hypothetical protein gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14755 YPD4_RS14760 YPD4_2501 YPD4_RS14760 3197243 3199159 - autotransporter gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14760 YPD4_RS14765 YPD4_RS14765 YPD4_RS14765 3199968 3200207 + hypothetical protein gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14765 YPD4_RS14770 YPD4_RS14770 YPD4_RS14770 3200246 3200497 + hypothetical protein gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14770 YPD4_RS14775 YPD4_2502 YPD4_RS14775 3200521 3201093 + hypothetical protein gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14775 YPD4_RS14780 YPD4_2503 YPD4_RS14780 3201105 3201506 - membrane protein gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14780 YPD4_RS14785 YPD4_2504 YPD4_RS14785 3201739 3202140 - membrane protein gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14785 YPD4_RS14790 YPD4_RS14790 YPD4_RS14790 3202133 3202336 - membrane protein gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14790 YPD4_RS14795 YPD4_2505 YPD4_RS14795 3202408 3202989 - membrane protein gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14795 YPD4_RS14800 YPD4_RS14800 YPD4_RS14800 3203662 3203907 + DNA-binding protein gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14800 YPD4_RS14805 YPD4_2506 YPD4_RS14805 3204120 3205529 - penicillin-binding protein 1C gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14805 YPD4_RS14810 YPD4_2507 YPD4_RS14810 3205686 3206894 - transposase gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14810 YPD4_RS14815 YPD4_2508 YPD4_RS14815 3207034 3208290 + PTS beta-glucoside transporter subunit IIBC gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14815 YPD4_RS14820 YPD4_2509 YPD4_RS14820 3208407 3208955 - NUDIX hydrolase gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14820 YPD4_RS14825 YPD4_2510 YPD4_RS14825 3209177 3209764 - phosphodiesterase gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14825 YPD4_RS14830 YPD4_2511 YPD4_RS14830 3209952 3210644 - diguanylate phosphodiesterase gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14830 YPD4_RS14835 YPD4_2512 YPD4_RS14835 3210998 3211906 + epimerase gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14835 YPD4_RS14840 YPD4_2513 YPD4_RS14840 3212030 3212827 - histidine ABC transporter ATP-binding protein gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14840 YPD4_RS14845 YPD4_2514 YPD4_RS14845 3212841 3213557 - histidine/lysine/arginine/ornithine ABC transporter permease HisM with HisJPQ is involved in transport of histidine%2C lysine%2C arginine and ornithine gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14845 YPD4_RS14850 YPD4_2515 YPD4_RS14850 3213554 3214240 - histidine/lysine/arginine/ornithine ABC transporter permease HisQ with HisJMP is involved in the transport of histidine/lysine/arginine/ornithine gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14850 YPD4_RS14855 YPD4_2516 YPD4_RS14855 3214343 3215125 - amino acid ABC transporter substrate-binding protein with HisPMQ is involved in the transport of histidine gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14855 YPD4_RS14860 YPD4_2517 YPD4_RS14860 3215650 3216222 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14860 YPD4_RS14865 YPD4_2518 YPD4_RS14865 3216469 3217986 - amidophosphoribosyltransferase Catalyzes first step of the de novo purine nucleotide biosynthetic pathway gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14865 YPD4_RS14870 YPD4_2519 YPD4_RS14870 3217999 3218508 - colicin V production protein membrane protein required for colicin V production gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14870 YPD4_RS14875 YPD4_2520 YPD4_RS14875 3218820 3219542 - cell division protein DedD gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14875 YPD4_RS14880 YPD4_2521 YPD4_RS14880 3219662 3220966 - bifunctional folylpolyglutamate synthase/ dihydrofolate synthase gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14880 YPD4_RS14885 YPD4_2522 YPD4_RS14885 3221215 3222129 - acetyl-CoA carboxylase carboxyltransferase subunit beta catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer of AccA2D2 subunits gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14885 YPD4_RS14890 YPD4_2523 YPD4_RS14890 3222360 3223022 - membrane protein gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14890 YPD4_RS14895 YPD4_2524 truA truA 3223179 3224009 - tRNA pseudouridine synthase A mediates pseudouridylation (positions 38%2C 39%2C 40) at the tRNA anticodon region which contributes to the structural stability gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14895 YPD4_RS14900 YPD4_2525 YPD4_RS14900 3224060 3225070 - semialdehyde dehydrogenase gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14900 YPD4_RS14905 YPD4_2526 YPD4_RS14905 3225240 3226367 - erythronate-4-phosphate dehydrogenase gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14905 YPD4_RS14910 YPD4_2527 YPD4_RS14910 3226414 3227199 - AraC family transcriptional regulator gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14910 YPD4_RS14915 YPD4_RS14915 YPD4_RS14915 3227186 3227347 - hypothetical protein gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14915 YPD4_RS14920 YPD4_2528 YPD4_RS14920 3227425 3228342 + multidrug DMT transporter gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14920 YPD4_RS14925 YPD4_2529 YPD4_RS14925 3228627 3229664 + flagella biosynthesis regulator gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14925 YPD4_RS14930 YPD4_2530 YPD4_RS14930 3230006 3230536 - fimbria A protein gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14930 YPD4_RS14935 YPD4_2531 YPD4_RS14935 3231327 3232019 + racemase gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14935 YPD4_RS14940 YPD4_RS14940 YPD4_RS14940 3232427 3233651 - 3-oxoacyl-ACP synthase FabB%2C beta-Ketoacyl-ACP synthase I%2C KASI%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14940 YPD4_RS14945 YPD4_2534 mnmC mnmC 3233823 3235892 + tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14945 YPD4_RS14950 YPD4_RS14950 YPD4_RS14950 3236070 3236348 - hypothetical protein gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14950 YPD4_RS14955 YPD4_2535 YPD4_RS14955 3236406 3236948 - hypothetical protein gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14955 YPD4_RS14960 YPD4_2536 YPD4_RS14960 3237048 3237854 - membrane protein gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14960 YPD4_RS14965 YPD4_2537 mepA mepA 3237858 3238685 - penicillin-insensitive murein endopeptidase D-alanyl-D-alanine endopeptidase%3B functions in hydrolyzing cell wall peptidoglycan%3B similar to LAS metallopeptidases%3B forms a dimer in periplasm gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14965 YPD4_RS14970 YPD4_2538 YPD4_RS14970 3238691 3239776 - chorismate synthase catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14970 YPD4_RS14975 YPD4_2539 YPD4_RS14975 3239853 3240785 - 50S ribosomal protein L3 glutamine methyltransferase involved in methylation of ribosomal protein L3 gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14975 YPD4_RS14980 YPD4_2540 YPD4_RS14980 3241155 3241685 + peptidase S10 gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14980 YPD4_RS14985 YPD4_2541 YPD4_RS14985 3242087 3242578 - phosphohistidine phosphatase gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14985 YPD4_RS14990 YPD4_2542 fadJ fadJ 3243148 3245472 - fatty acid oxidation complex subunit alpha multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI%3B similar to FadA2B2 complex%3B involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14990 YPD4_RS14995 YPD4_2543 YPD4_RS14995 3245472 3246782 - 3-ketoacyl-CoA thiolase gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS14995 YPD4_RS15000 YPD4_RS15000 YPD4_RS15000 3247069 3247353 - hypothetical protein gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15000 YPD4_RS15005 YPD4_2544 YPD4_RS15005 3247779 3249044 + long-chain fatty acid outer membrane transporter gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15005 YPD4_RS15010 YPD4_2545 YPD4_RS15010 3249150 3249914 - membrane protein involved in maintaining OM lipid asymmetry gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15010 YPD4_RS15015 YPD4_2546 YPD4_RS15015 3249950 3251176 - cytochrome C gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15015 YPD4_RS15020 YPD4_2547 YPD4_RS15020 3251176 3251688 - cytochrome C biogenesis protein gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15020 YPD4_RS15025 YPD4_2548 YPD4_RS15025 3251685 3252251 - thiol:disulfide interchange protein DsbE cytochrome c-type biogenesis thioredoxin%3B involved in the reduction of disulfide bonds to allow heme bonding gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15025 YPD4_RS15030 YPD4_2549 YPD4_RS15030 3252248 3254218 - heme lyase subunit CcmF cytochrome c-type biogenesis protein%3B required for the transfer of heme to apocytochrome c gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15030 YPD4_RS15035 YPD4_2550 YPD4_RS15035 3254215 3254709 - cytochrome c-type biogenesis protein CcmE CycJ%3B periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes%3B requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome%3B part of the cytochrome c maturation system%3B periplasmic protein anchored to the inner membrane gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15035 YPD4_RS15040 YPD4_2551 YPD4_RS15040 3254706 3255008 - heme exporter protein D gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15040 YPD4_RS15045 YPD4_2552 YPD4_RS15045 3255005 3255742 - heme exporter protein C with CcmABDE is involved in the transport of protoheme IX%3B CcmC is required for heme transfer to CcmE gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15045 YPD4_RS15050 YPD4_2553 YPD4_RS15050 3255805 3256464 - heme exporter protein B with CcmABCE is involved in the transport of protoheme IX%3B CcmB is required for the release of holoCcmE from CcmC gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15050 YPD4_RS15055 YPD4_2554 YPD4_RS15055 3256434 3257090 - cytochrome c biogenesis ATP-binding export protein CcmA gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15055 YPD4_RS15060 YPD4_2555 YPD4_RS15060 3257535 3258002 - hypothetical protein gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15060 YPD4_RS15065 YPD4_t39 YPD4_RS15065 3258257 3258331 - tRNA-Arg tRNA gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15065 YPD4_RS15070 YPD4_2556 YPD4_RS15070 3258618 3259160 + membrane protein gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15070 YPD4_RS15075 YPD4_2557 YPD4_RS15075 3259165 3261204 + membrane protein gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15075 YPD4_RS15080 YPD4_2558 YPD4_RS15080 3261580 3261921 + hypothetical protein gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15080 YPD4_RS15085 YPD4_2559 YPD4_RS15085 3261996 3262343 - membrane protein gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15085 YPD4_RS15090 YPD4_2560 YPD4_RS15090 3262368 3262847 - lysozyme gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15090 YPD4_RS15095 YPD4_2561 YPD4_RS15095 3262944 3263750 - ImpE family protein gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15095 YPD4_RS15100 YPD4_2562 YPD4_RS15100 3263770 3264612 - hypothetical protein gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15100 YPD4_RS15105 YPD4_RS15105 YPD4_RS15105 3264618 3264878 - hypothetical protein gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15105 YPD4_RS15110 YPD4_2563 YPD4_RS15110 3264977 3267576 - type IV secretion protein Rhs gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15110 YPD4_RS15115 YPD4_2564 YPD4_RS15115 3267870 3271697 - type VI secretion protein IcmF gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15115 YPD4_RS15120 YPD4_RS15120 YPD4_RS15120 3271706 3272542 - polymerase gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15120 YPD4_RS15125 YPD4_2566 YPD4_RS15125 3272558 3273337 - transposase gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15125 YPD4_RS15130 YPD4_2567 YPD4_RS15130 3273337 3274359 - transposase gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15130 YPD4_RS15135 YPD4_2568 YPD4_RS15135 3274373 3275041 - hypothetical protein gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15135 YPD4_RS15140 YPD4_2569 YPD4_RS15140 3275038 3276387 - type VI secretion protein gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15140 YPD4_RS15145 YPD4_2570 YPD4_RS15145 3276391 3276930 - type VI secretion protein gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15145 YPD4_RS15150 YPD4_2571 YPD4_RS15150 3277204 3277689 - type VI secretion system effector gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15150 YPD4_RS15155 YPD4_2572 YPD4_RS15155 3278015 3279517 - type VI secretion protein EvpB gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15155 YPD4_RS15160 YPD4_2573 YPD4_RS15160 3279541 3280065 - hypothetical protein gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15160 YPD4_RS15165 YPD4_2574 YPD4_RS15165 3280170 3280778 - fimbrial protein gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15165 YPD4_RS15170 YPD4_2575 YPD4_RS15170 3280763 3281953 - fimbrial usher protein gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15170 YPD4_RS15175 YPD4_2576 YPD4_RS15175 3281978 3283186 + transposase gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15175 YPD4_RS15180 YPD4_2577 YPD4_RS15180 3283208 3284758 - fimbrial usher protein gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15180 YPD4_RS15185 YPD4_2578 YPD4_RS15185 3284886 3285647 - pilus assembly protein gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15185 YPD4_RS15190 YPD4_2579 YPD4_RS15190 3285804 3286349 - frimbrial protein gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15190 YPD4_RS15195 YPD4_2580 YPD4_RS15195 3286550 3289225 - ATPase AAA gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15195 YPD4_RS15200 YPD4_2581 YPD4_RS15200 3290008 3291888 + type VI secretion protein gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15200 YPD4_RS15205 YPD4_2582 YPD4_RS15205 3291888 3292913 + type VI secretion protein gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15205 YPD4_RS15210 YPD4_2583 YPD4_RS15210 3293012 3294193 + membrane protein gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15210 YPD4_RS15215 YPD4_2584 YPD4_RS15215 3294200 3295231 + fimbrial protein gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15215 YPD4_RS15220 YPD4_2585 YPD4_RS15220 3295271 3296608 + glycosyltransferase gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15220 YPD4_RS15225 YPD4_2586 YPD4_RS15225 3296605 3297288 + membrane protein gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15225 YPD4_RS15230 YPD4_2587 YPD4_RS15230 3297289 3298971 + membrane protein gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15230 YPD4_RS15235 YPD4_2588 YPD4_RS15235 3298968 3299450 + hypothetical protein gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15235 YPD4_RS15240 YPD4_2589 YPD4_RS15240 3299808 3300410 - LuxR family transcriptional regulator gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15240 YPD4_RS15245 YPD4_2590 YPD4_RS15245 3301665 3302759 - murein hydrolase B membrane-bound lytic murein transglycosylase B%3B catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15245 YPD4_RS15250 YPD4_2591 YPD4_RS15250 3303088 3304107 + iron ABC transporter substrate-binding protein gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15250 YPD4_RS15255 YPD4_2592 YPD4_RS15255 3304163 3305749 + iron ABC transporter permease gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15255 YPD4_RS15260 YPD4_2593 YPD4_RS15260 3305746 3306795 + Fe(3+) ions import ATP-binding protein FbpC gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15260 YPD4_RS15265 YPD4_2594 YPD4_RS15265 3306868 3307392 - membrane protein gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15265 YPD4_RS15270 YPD4_RS15270 YPD4_RS15270 3307859 3308338 + hypothetical protein gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15270 YPD4_RS15275 YPD4_2595 YPD4_RS15275 3308568 3309416 - hypothetical protein gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15275 YPD4_RS15280 YPD4_2596 YPD4_RS15280 3310247 3312673 + dimethyl sulfoxide reductase subunit A gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15280 YPD4_RS15285 YPD4_2597 YPD4_RS15285 3312685 3313302 + dimethyl sulfoxide reductase subunit B gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15285 YPD4_RS15290 YPD4_2598 YPD4_RS15290 3313304 3314080 + diguanylate cyclase gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15290 YPD4_RS15295 YPD4_2599 YPD4_RS15295 3314562 3315158 + nitrate reductase subunit delta gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15295 YPD4_RS15300 YPD4_2600 YPD4_RS15300 3315155 3315724 + (Fe-S)-binding protein gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15300 YPD4_RS15305 YPD4_2601 YPD4_RS15305 3315970 3316626 - lipoprotein gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15305 YPD4_RS15310 YPD4_2602 YPD4_RS15310 3316623 3316979 - lipoprotein gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15310 YPD4_RS15315 YPD4_2603 YPD4_RS15315 3317006 3317677 - lipoprotein gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15315 YPD4_RS15320 YPD4_2604 YPD4_RS15320 3318267 3318698 + antitoxin HicB gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15320 YPD4_RS15325 YPD4_2605 YPD4_RS15325 3318793 3319317 - cytochrome B gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15325 YPD4_RS15330 YPD4_2606 YPD4_RS15330 3319581 3320816 - aminotransferase gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15330 YPD4_RS15335 YPD4_2607 YPD4_RS15335 3321082 3322329 + diguanylate cyclase gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15335 YPD4_RS15340 YPD4_2608 glk glk 3322407 3323378 - glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15340 YPD4_RS15345 YPD4_2609 YPD4_RS15345 3323559 3324035 - Na+-translocating NADH-quinone reductase subunit E gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15345 YPD4_RS15350 YPD4_2610 YPD4_RS15350 3324138 3325016 + LysR family transcriptional regulator gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15350 YPD4_RS15355 YPD4_2611 YPD4_RS15355 3325152 3326141 + glyceraldehyde 3-phosphate reductase gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15355 YPD4_RS15360 YPD4_RS15360 YPD4_RS15360 3326411 3326725 + hypothetical protein gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15360 YPD4_RS15365 YPD4_2613 YPD4_RS15365 3326818 3328047 - divalent metal cation transporter MntH gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15365 YPD4_RS15370 YPD4_2614 YPD4_RS15370 3328498 3329682 + nucleoside permease gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15370 YPD4_RS15375 YPD4_t40 YPD4_RS15375 3330059 3330134 - tRNA-Lys tRNA gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15375 YPD4_RS15380 YPD4_t41 YPD4_RS15380 3330334 3330409 - tRNA-Val tRNA gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15380 YPD4_RS15385 YPD4_t42 YPD4_RS15385 3330454 3330529 - tRNA-Val tRNA gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15385 YPD4_RS15390 YPD4_t43 YPD4_RS15390 3330566 3330641 - tRNA-Val tRNA gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15390 YPD4_RS15395 YPD4_2615 gltX gltX 3330916 3332331 + glutamate--tRNA ligase catalyzes a two-step reaction%2C first charging an glutamate molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B contains discriminating and non-discriminating subtypes gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15395 YPD4_RS15400 YPD4_2616 YPD4_RS15400 3332524 3332982 + transposase gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15400 YPD4_RS15405 YPD4_t44 YPD4_RS15405 3333273 3333348 + tRNA-Ala tRNA gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15405 YPD4_RS15410 YPD4_t45 YPD4_RS15410 3333426 3333501 + tRNA-Ala tRNA gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15410 YPD4_RS15415 YPD4_2617 YPD4_RS15415 3333696 3334301 + nitrate reductase gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15415 YPD4_RS15420 YPD4_2618 YPD4_RS15420 3334433 3334780 + hypothetical protein gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15420 YPD4_RS15425 YPD4_RS15425 YPD4_RS15425 3334881 3335096 - hypothetical protein gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15425 YPD4_RS15430 YPD4_2619 ligA ligA 3335116 3337128 - DNA ligase this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction%3B essential for DNA replication and repair of damaged DNA%3B similar to ligase LigB gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15430 YPD4_RS15435 YPD4_2620 YPD4_RS15435 3337219 3338205 - Cell division protein ZipA homolog gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15435 YPD4_RS15440 YPD4_2621 YPD4_RS15440 3338454 3339187 + sulfate transporter gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15440 YPD4_RS15445 YPD4_2622 YPD4_RS15445 3339344 3340312 + cysteine synthase A gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15445 YPD4_RS15450 YPD4_RS15450 YPD4_RS15450 3340811 3341068 + PTS sugar transporter gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15450 YPD4_RS15455 YPD4_2623 YPD4_RS15455 3341117 3342844 + phosphoenolpyruvate-protein phosphotransferase Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15455 YPD4_RS15460 YPD4_2624 YPD4_RS15460 3342893 3343402 + PTS glucose transporter subunit IIA phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15460 YPD4_RS15465 YPD4_2625 YPD4_RS15465 3343545 3344003 - transposase gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15465 YPD4_RS15470 YPD4_RS15470 YPD4_RS15470 3343993 3344187 - invasin gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15470 YPD4_RS15475 YPD4_2626 YPD4_RS15475 3344273 3345622 - two-component system sensor histidine kinase gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15475 YPD4_RS15480 YPD4_2627 YPD4_RS15480 3345648 3346331 - two-component system response regulator gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15480 YPD4_RS15485 YPD4_2628 YPD4_RS15485 3346519 3347724 + hemolysin secretion protein D gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15485 YPD4_RS15490 YPD4_2629 YPD4_RS15490 3347728 3349764 + MacB family efflux pump subunit with MacA is involved in the export of macrolide gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15490 YPD4_RS15495 YPD4_2630 YPD4_RS15495 3350019 3351665 - CoA-disulfide reductase gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15495 YPD4_RS15500 YPD4_2631 YPD4_RS15500 3351725 3353185 - permease gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15500 YPD4_RS15505 YPD4_RS15505 YPD4_RS15505 3353182 3353379 - membrane protein gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15505 YPD4_RS15510 YPD4_2632 YPD4_RS15510 3353522 3354529 - peptidase M24 gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15510 YPD4_RS15515 YPD4_RS15515 YPD4_RS15515 3354550 3354741 - creatininase gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15515 YPD4_RS15520 YPD4_2633 YPD4_RS15520 3354775 3355956 - aminotransferase gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15520 YPD4_RS15525 YPD4_2634 YPD4_RS15525 3356664 3358082 + hypothetical protein gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15525 YPD4_RS15530 YPD4_2635 YPD4_RS15530 3358315 3359859 + two-component system sensor histidine kinase gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15530 YPD4_RS15535 YPD4_2636 YPD4_RS15535 3359856 3360563 + two-component system response regulator gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15535 YPD4_RS15540 YPD4_2637 YPD4_RS15540 3360944 3362176 - type III secretion protein GogB gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15540 YPD4_RS15545 YPD4_2638 cysM cysM 3362421 3363299 - cysteine synthase B catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15545 YPD4_RS15550 YPD4_2639 YPD4_RS15550 3363470 3364561 - sulfate/thiosulfate import ATP-binding protein CysA gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15550 YPD4_RS15555 YPD4_2640 cysW cysW 3364551 3365426 - sulfate/thiosulfate transporter permease subunit Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15555 YPD4_RS15560 YPD4_2641 YPD4_RS15560 3365426 3366259 - sulfate/thiosulfate transporter subunit gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15560 YPD4_RS15565 YPD4_2642 YPD4_RS15565 3366259 3367296 - thiosulfate transporter subunit gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15565 YPD4_RS15570 YPD4_2643 YPD4_RS15570 3367611 3369143 - sialic acid transporter gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15570 YPD4_RS15575 YPD4_2644 YPD4_RS15575 3369748 3370627 - N-acetylmannosamine kinase gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15575 YPD4_RS15580 YPD4_RS15580 YPD4_RS15580 3370624 3370776 - hypothetical protein gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15580 YPD4_RS15585 YPD4_2645 YPD4_RS15585 3370816 3371286 - sugar isomerase gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15585 YPD4_RS15590 YPD4_2646 YPD4_RS15590 3371368 3372240 - N-acetylmannosamine kinase catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15590 YPD4_RS15595 YPD4_2647 YPD4_RS15595 3372510 3373007 + membrane protein gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15595 YPD4_RS15600 YPD4_2649 YPD4_RS15600 3373853 3374476 + N-acetylmannosamine-6-phosphate 2-epimerase Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15600 YPD4_RS15605 YPD4_2650 YPD4_RS15605 3374539 3375432 + N-acetylneuraminate lyase gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15605 YPD4_RS15610 YPD4_2651 YPD4_RS15610 3375530 3376429 - deferrochelatase/peroxidase YfeX gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15610 YPD4_RS15615 YPD4_2652 YPD4_RS15615 3376607 3377218 - hypothetical protein gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15615 YPD4_RS15620 YPD4_2653 YPD4_RS15620 3377577 3377990 + hypothetical protein gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15620 YPD4_RS15625 YPD4_2654 YPD4_RS15625 3378477 3380756 + autotransporter gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15625 YPD4_RS15630 YPD4_2655 YPD4_RS15630 3380848 3381264 - membrane protein gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15630 YPD4_RS15635 YPD4_RS15635 YPD4_RS15635 3381370 3381555 + hypothetical protein gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15635 YPD4_RS15640 YPD4_2656 YPD4_RS15640 3381737 3382162 - acetyltransferase gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15640 YPD4_RS15645 YPD4_2657 YPD4_RS15645 3382445 3383374 + coproporphyrinogen III oxidase catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15645 YPD4_RS15650 YPD4_2658 YPD4_RS15650 3383374 3383832 + hypothetical protein gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15650 YPD4_RS15655 YPD4_2659 YPD4_RS15655 3383983 3386262 - NADP-dependent malic enzyme NADP-dependent%3B catalyzes the oxidative decarboxylation of malate to form pyruvate%3B decarboxylates oxaloacetate gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15655 YPD4_RS15660 YPD4_2660 YPD4_RS15660 3386458 3387054 - GDP-mannose pyrophosphatase NudK gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15660 YPD4_RS15665 YPD4_2661 YPD4_RS15665 3387238 3387837 - cytochrome C protein NapC with NapABDFGH functions as a nitrate reductase%3B NapC functions as an electron shuttle between NapAB and NapGH or quinone gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15665 YPD4_RS15670 YPD4_2662 napB napB 3387865 3388332 - nitrate reductase cytochrome C550 subunit small subunit of periplasmic nitrate reductase%3B receives electrons from the membrane-bound NapC and passes them to NapA gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15670 YPD4_RS15675 YPD4_2663 YPD4_RS15675 3388415 3390907 - periplasmic nitrate reductase periplasmic%3B catalytic subunit%3B with NapBC catalyzes the reduction of nitrate to nitrite%3B NapAB receives electrons from NapC gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15675 YPD4_RS15680 YPD4_RS15680 YPD4_RS15680 3390904 3391170 - nitrate reductase gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15680 YPD4_RS15685 YPD4_2664 YPD4_RS15685 3391160 3391663 - ferredoxin-type protein NapF gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15685 YPD4_RS15690 YPD4_2665 YPD4_RS15690 3392496 3393125 + transcriptional regulator nitrate/nitrite response regulator NarP%3B NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems%3B represses expression of other anaerobic genes gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15690 YPD4_RS15695 YPD4_RS15695 YPD4_RS15695 3393138 3393416 - hypothetical protein gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15695 YPD4_RS15700 YPD4_2666 YPD4_RS15700 3393831 3396962 + multidrug efflux RND transporter permease subunit gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15700 YPD4_RS15705 YPD4_2667 YPD4_RS15705 3397193 3397777 + hypothetical protein gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15705 YPD4_RS15710 YPD4_2668 YPD4_RS15710 3398066 3398614 + membrane protein gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15710 YPD4_RS15715 YPD4_2669 YPD4_RS15715 3399368 3400543 - anaerobic sulfatase maturase gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15715 YPD4_RS15720 YPD4_2670 YPD4_RS15720 3400601 3402271 - sulfatase gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15720 YPD4_RS15725 YPD4_2671 YPD4_RS15725 3402752 3403822 - ABC transporter ATP-binding protein gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15725 YPD4_RS15730 YPD4_2672 YPD4_RS15730 3403815 3405584 - spermidine/putrescine ABC transporter permease gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15730 YPD4_RS15735 YPD4_2673 YPD4_RS15735 3405679 3406767 - iron ABC transporter substrate-binding protein gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15735 YPD4_RS15740 YPD4_2674 YPD4_RS15740 3407078 3407551 + hypothetical protein gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15740 YPD4_RS15745 YPD4_2675 YPD4_RS15745 3407711 3408109 + reductase gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15745 YPD4_RS15750 YPD4_2676 YPD4_RS15750 3408111 3409239 + succinyl-diaminopimelate desuccinylase gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15750 YPD4_RS15755 YPD4_2677 YPD4_RS15755 3409236 3409913 + carboxypeptidase gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15755 YPD4_RS15760 YPD4_RS15760 YPD4_RS15760 3409981 3410175 + membrane protein gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15760 YPD4_RS15765 YPD4_RS15765 YPD4_RS15765 3410380 3412480 - methionine tRNA cytidine acetyltransferase cetylates the wobble base C34 of the elongation-specific methionine tRNA gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15765 YPD4_RS15770 YPD4_2680 YPD4_RS15770 3412482 3412934 - membrane protein gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15770 YPD4_RS15775 YPD4_2681 YPD4_RS15775 3413028 3413894 - hypothetical protein gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15775 YPD4_RS15780 YPD4_2682 YPD4_RS15780 3414113 3414826 - phosphoribosylaminoimidazole-succinocarboxamide synthase catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis%3B SAICAR synthase gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15780 YPD4_RS15785 YPD4_2683 YPD4_RS15785 3414974 3415432 - transposase gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15785 YPD4_RS15790 YPD4_RS15790 YPD4_RS15790 3415422 3415577 - invasin gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15790 YPD4_RS15795 YPD4_2684 YPD4_RS15795 3415607 3416665 - outer membrane protein assembly factor BamC gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15795 YPD4_RS15800 YPD4_2685 YPD4_RS15800 3416683 3417564 - 4-hydroxy-tetrahydrodipicolinate synthase gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15800 YPD4_RS15805 YPD4_2686 gcvR gcvR 3417729 3418298 + glycine cleavage system transcriptional regulator negative transcriptional regulator of the gcvTHP operon gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15805 YPD4_RS15810 YPD4_2687 bcp bcp 3418301 3418771 + thiol peroxidase bacterioferritin comigratory protein%3B thiol peroxidase%3B thioredoxin-dependent%3B hydroperoxide peroxidase%3B in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide%3B contains an active site cysteine gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15810 YPD4_RS15815 YPD4_RS15815 YPD4_RS15815 3419015 3419434 - hypothetical protein gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15815 YPD4_RS15820 YPD4_2688 YPD4_RS15820 3419438 3420133 - hypothetical protein gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15820 YPD4_RS15825 YPD4_RS15825 YPD4_RS15825 3420471 3420644 + hypothetical protein gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15825 YPD4_RS15830 YPD4_2689 YPD4_RS15830 3420733 3421797 - permease gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15830 YPD4_RS15835 YPD4_2690 YPD4_RS15835 3422128 3423612 + hypothetical protein gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15835 YPD4_RS15840 YPD4_2691 YPD4_RS15840 3423719 3424075 + arsenate reductase gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15840 YPD4_RS15845 YPD4_2692 YPD4_RS15845 3424287 3424994 - DnaA regulatory inactivator Hda controls initiation of DNA replication by inhibiting re-initiation of replication%2C promotes hydrolysis of DnaA-bound ATP gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15845 YPD4_RS15850 YPD4_2693 YPD4_RS15850 3425182 3425640 - transposase gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15850 YPD4_RS15855 YPD4_RS15855 YPD4_RS15855 3425630 3425860 - invasin gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15855 YPD4_RS15860 YPD4_2694 cysS cysS 3425987 3427372 - cysteine--tRNA ligase catalyzes a two-step reaction%3B charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15860 YPD4_RS15865 YPD4_2695 YPD4_RS15865 3427583 3428077 + peptidyl-prolyl cis-trans isomerase gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15865 YPD4_RS15870 YPD4_2696 YPD4_RS15870 3428088 3428810 + UDP-2%2C3-diacylglucosamine hydrolase catalyzes the formation of 2%2C3%3Ddiacylglucosamine 1-phosphate from UDP-2%2C3%3Ddiacylglucosamine gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15870 YPD4_RS15875 YPD4_2697 purE purE 3429106 3429630 + N5-carboxyaminoimidazole ribonucleotide mutase catalyzes the formation of 4-carboxy-5-aminoimidazole ribonucleotide from N5-carboxyaminoimidazole ribonucleotide gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15875 YPD4_RS15880 YPD4_2698 YPD4_RS15880 3429627 3430691 + phosphoribosylaminoimidazole carboxylase gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15880 YPD4_RS15885 YPD4_RS15885 YPD4_RS15885 3430735 3433165 - sugar ABC transporter permease gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15885 YPD4_RS15890 YPD4_2701 YPD4_RS15890 3433162 3433848 - phosphonate ABC transporter ATP-binding protein gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15890 YPD4_RS15895 YPD4_2702 YPD4_RS15895 3433819 3434454 + multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15895 YPD4_RS15900 YPD4_2703 YPD4_RS15900 3434841 3435617 + oxidoreductase gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15900 YPD4_RS15905 YPD4_2704 YPD4_RS15905 3435694 3436563 + thioredoxin gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15905 YPD4_RS15910 YPD4_2705 YPD4_RS15910 3436758 3437672 + protease gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15910 YPD4_RS15915 YPD4_2706 YPD4_RS15915 3437675 3438124 + membrane protein gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15915 YPD4_RS15920 YPD4_2707 YPD4_RS15920 3438233 3438652 - transcriptional regulator gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15920 YPD4_RS15925 YPD4_2708 copA copA 3438859 3441744 + copper-exporting P-type ATPase A gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15925 YPD4_RS15930 YPD4_2709 YPD4_RS15930 3442265 3443074 + hypothetical protein gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15930 YPD4_RS15935 YPD4_2710 YPD4_RS15935 3443338 3443817 + hypothetical protein gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15935 YPD4_RS15940 YPD4_RS15940 YPD4_RS15940 3443883 3444140 + gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15940 YPD4_RS15945 YPD4_RS15945 YPD4_RS15945 3444154 3444393 + hypothetical protein gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15945 YPD4_RS15950 YPD4_2711 YPD4_RS15950 3444497 3445120 - 5'-nucleotidase gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15950 YPD4_RS15955 YPD4_2712 YPD4_RS15955 3445114 3445905 - metallophosphatase gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15955 YPD4_RS15960 YPD4_RS15960 YPD4_RS15960 3445895 3446152 - protein ushA gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15960 YPD4_RS15965 YPD4_2713 YPD4_RS15965 3446434 3447648 + fosmidomycin resistance protein gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15965 YPD4_RS15970 YPD4_2714 YPD4_RS15970 3447883 3449574 + cation:proton antiport protein YbaL%3B member of the CPA-2 family of antiporters%3B uncharacterized protein gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15970 YPD4_RS15975 YPD4_2715 YPD4_RS15975 3449671 3450975 - inosine/guanosine kinase catalyzes the formation of inosine/guanosine monophosphate from inosine or guanosine and ATP gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15975 YPD4_RS15980 YPD4_RS15980 YPD4_RS15980 3451179 3452330 - chain-length determining protein gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15980 YPD4_RS15985 YPD4_2717 YPD4_RS15985 3452378 3453751 - phosphomannomutase capsular polysaccharide biosynthesis protein%3B catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15985 YPD4_RS15990 YPD4_2718 YPD4_RS15990 3453756 3454499 - glycosyl transferase gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15990 YPD4_RS15995 YPD4_2719 cpsB cpsB 3454502 3455908 - mannose-1-phosphate guanyltransferase capsular polysaccharide colanic acid biosynthesis protein%3B catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS15995 YPD4_RS16000 YPD4_2720 YPD4_RS16000 3456144 3457109 - GDP-fucose synthetase bifunctional GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase%3Bcatalyzes the formation of GDP-fucose from GDP-4-dehydro-6-deoxy-D-mannose gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16000 YPD4_RS16005 YPD4_RS16005 YPD4_RS16005 3457115 3458237 - GDP-mannose 4%2C6-dehydratase catalyzes the formation of GDP-4-dehydro-6-deoxy-D-mannose from GDP mannose gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16005 YPD4_RS16010 YPD4_2723 YPD4_RS16010 3458253 3459266 - mannosyltransferase gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16010 YPD4_RS16015 YPD4_2724 YPD4_RS16015 3459515 3460411 - histidine kinase gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16015 YPD4_RS16020 YPD4_2725 YPD4_RS16020 3460733 3461875 - mannosyltransferase gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16020 YPD4_RS16025 YPD4_2726 YPD4_RS16025 3462255 3462968 - glycosyl transferase gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16025 YPD4_RS16030 YPD4_2727 YPD4_RS16030 3462979 3464322 - O-unit flippase Wzx gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16030 YPD4_RS16035 YPD4_2728 YPD4_RS16035 3464396 3465679 - O-antigen synthesis protein WbyH gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16035 YPD4_RS16040 YPD4_2729 YPD4_RS16040 3465680 3466537 - paratose synthase gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16040 YPD4_RS16045 YPD4_2730 YPD4_RS16045 3466574 3467887 - LPS biosynthesis protein gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16045 YPD4_RS16050 YPD4_2731 YPD4_RS16050 3467905 3468804 - CDP-glucose 4%2C6-dehydratase gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16050 YPD4_RS16055 YPD4_RS16055 YPD4_RS16055 3468836 3468979 - CDP-glycerol glycerophosphotransferase gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16055 YPD4_RS16060 YPD4_2732 YPD4_RS16060 3468984 3469757 - glucose-1-phosphate cytidylyltransferase gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16060 YPD4_RS16065 YPD4_2733 YPD4_RS16065 3469795 3470784 - CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16065 YPD4_RS16070 YPD4_2734 YPD4_RS16070 3471382 3472344 - ferrochelatase gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16070 YPD4_RS16075 YPD4_2735 adk adk 3472434 3473078 - adenylate kinase essential enzyme that recycles AMP in active cells%3B converts ATP and AMP to two molecules of ADP gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16075 YPD4_RS16080 YPD4_2736 YPD4_RS16080 3473305 3475179 - chaperone protein HtpG molecular chaperone gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16080 YPD4_RS16085 YPD4_2737 recR recR 3475371 3475976 - recombination protein RecR involved in a recombinational process of DNA repair%2C independent of the recBC complex gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16085 YPD4_RS16090 YPD4_2738 YPD4_RS16090 3475976 3476308 - hypothetical protein gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16090 YPD4_RS16095 YPD4_2739 YPD4_RS16095 3476364 3478340 - DNA polymerase III subunit gamma/tau catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the tau chain serves as a scaffold to help in the dimerizaton of the alpha%2Cepsilon and theta core complex%3B the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16095 YPD4_RS16100 YPD4_2740 YPD4_RS16100 3478996 3479559 - adenine phosphoribosyltransferase catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16100 YPD4_RS16105 YPD4_RS16105 YPD4_RS16105 3479992 3480180 + hypothetical protein gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16105 YPD4_RS16110 YPD4_2741 YPD4_RS16110 3480379 3480915 + prephenate dehydrogenase gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16110 YPD4_RS16115 YPD4_RS16115 YPD4_RS16115 3481086 3481241 + hypothetical protein gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16115 YPD4_RS16120 YPD4_2742 YPD4_RS16120 3481581 3484982 - hypothetical protein gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16120 YPD4_RS16125 YPD4_2743 YPD4_RS16125 3485247 3485600 - hypothetical protein gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16125 YPD4_RS16130 YPD4_2744 YPD4_RS16130 3485613 3486269 - transcriptional regulator regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16130 YPD4_RS16135 YPD4_2745 YPD4_RS16135 3486414 3487601 + multidrug transporter with AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16135 YPD4_RS16140 YPD4_2747 YPD4_RS16140 3487618 3490769 + multidrug transporter gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16140 YPD4_RS16145 YPD4_RS16145 YPD4_RS16145 3490955 3491215 + 50S ribosomal protein L31 type B gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16145 YPD4_RS16150 YPD4_RS16150 rpmJ rpmJ 3491231 3491374 + 50S ribosomal protein L36 smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group do not have the motif gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16150 YPD4_RS16155 YPD4_2748 YPD4_RS16155 3492248 3492601 + hypothetical protein gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16155 YPD4_RS16160 YPD4_2749 YPD4_RS16160 3492760 3493128 + hypothetical protein gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16160 YPD4_RS16165 YPD4_RS16165 YPD4_RS16165 3493177 3493380 + modulating protein YmoA with Hns involved in transcriptional regulation of hemolysin%3B non-specific DNA-binding protein which affects the production of multiple proteins gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16165 YPD4_RS16170 YPD4_2750 YPD4_RS16170 3494268 3494657 + 6-O-methylguanine DNA methyltransferase gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16170 YPD4_RS16175 YPD4_2751 YPD4_RS16175 3494793 3495314 - lipoprotein gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16175 YPD4_RS16180 YPD4_2752 YPD4_RS16180 3495571 3496431 + acyl-CoA thioesterase gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16180 YPD4_RS16185 YPD4_2753 YPD4_RS16185 3496691 3497980 - ammonium transporter gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16185 YPD4_RS16190 YPD4_2754 YPD4_RS16190 3498020 3498358 - nitrogen regulatory protein P-II 2 indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16190 YPD4_RS16195 YPD4_2755 YPD4_RS16195 3498768 3500591 - multidrug ABC transporter ATP-binding protein gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16195 YPD4_RS16200 YPD4_2756 YPD4_RS16200 3500584 3502350 - multidrug ABC transporter ATP-binding protein gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16200 YPD4_RS16205 YPD4_2757 YPD4_RS16205 3502452 3502913 - AsnC family transcriptional regulator gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16205 YPD4_RS16210 YPD4_2758 YPD4_RS16210 3503039 3504079 + cysteine synthase gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16210 YPD4_RS16215 YPD4_2759 YPD4_RS16215 3504291 3505112 - HMP-PP phosphatase HMP-PP phosphatase%3B catalyzes the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate (HMP-PP) to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate (HMP-P) gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16215 YPD4_RS16220 YPD4_2760 YPD4_RS16220 3505217 3506920 + hypothetical protein gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16220 YPD4_RS16225 YPD4_2761 YPD4_RS16225 3507185 3507883 + 7-cyano-7-deazaguanine synthase YbaX%3B catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)%2C as one of the early reactions of quenosine biosynthesis%3B quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn%2C Asp%2C Tyr%2C and His gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16225 YPD4_RS16230 YPD4_2762 YPD4_RS16230 3507969 3508376 - thioesterase gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16230 YPD4_RS16235 YPD4_2763 YPD4_RS16235 3508730 3509176 - transporter gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16235 YPD4_RS16240 YPD4_2764 YPD4_RS16240 3509316 3511202 - peptidyl-prolyl cis-trans isomerase gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16240 YPD4_RS16245 YPD4_RS16245 YPD4_RS16245 3511503 3511775 - transcriptional regulator histone-like DNA-binding protein gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16245 YPD4_RS16250 YPD4_2766 YPD4_RS16250 3511993 3514346 - DNA-binding protein gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16250 YPD4_RS16255 YPD4_2767 clpX clpX 3514541 3515812 - ATP-dependent Clp protease ATP-binding subunit ClpX binds and unfolds substrates as part of the ClpXP protease gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16255 YPD4_RS16260 YPD4_2768 YPD4_RS16260 3516018 3516641 - ATP-dependent Clp protease proteolytic subunit gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16260 YPD4_RS16265 YPD4_2769 YPD4_RS16265 3517103 3518407 - trigger factor gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16265 YPD4_RS16270 YPD4_RS16270 YPD4_RS16270 3518480 3518665 - hypothetical protein gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16270 YPD4_RS16275 YPD4_2770 YPD4_RS16275 3518824 3519138 - BolA family transcriptional regulator positive transcriptional regulator of morphogenetic pathway%3B controlling several genes involved in oxidative stress%2C acid stress%2C heat shock%2C osmotic shock%2C and carbon-starvation stress gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16275 YPD4_RS16280 YPD4_2771 YPD4_RS16280 3519493 3520071 + hypothetical protein gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16280 YPD4_RS16285 YPD4_2772 ampG ampG 3520189 3521667 + AmpG family muropeptide MFS transporter in Escherichia coli this protein is a permease involved in peptidoglycan recycling%3B member of major facilitator superfamily%3B MFS%3B inner membrane protein gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16285 YPD4_RS16290 YPD4_2773 YPD4_RS16290 3521959 3522726 + ion channel protein Tsx gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16290 YPD4_RS16295 YPD4_2774 YPD4_RS16295 3523096 3524052 + cytochrome O ubiquinol oxidase gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16295 YPD4_RS16300 YPD4_2775 YPD4_RS16300 3524057 3526048 + cytochrome O ubiquinol oxidase subunit I gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16300 YPD4_RS16305 YPD4_RS16305 YPD4_RS16305 3526038 3526652 + cytochrome O ubiquinol oxidase gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16305 YPD4_RS16310 YPD4_2777 YPD4_RS16310 3526652 3526984 + cytochrome O ubiquinol oxidase gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16310 YPD4_RS16315 YPD4_2778 YPD4_RS16315 3526998 3527885 + protoheme IX farnesyltransferase converts protoheme IX and farnesyl diphosphate to heme O gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16315 YPD4_RS16320 YPD4_2779 YPD4_RS16320 3528369 3529733 + membrane protein gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16320 YPD4_RS16325 YPD4_2780 YPD4_RS16325 3529857 3530348 - nucleotide-binding protein nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ%3B the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16325 YPD4_RS16330 YPD4_RS16330 YPD4_RS16330 3530580 3531491 + 2-dehydropantoate 2-reductase ketopantoate reductase%3B catalyzes the NADPH reduction of ketopantoate to pantoate%3B functions in pantothenate (vitamin B5) biosynthesis gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16330 YPD4_RS16335 YPD4_2782 YPD4_RS16335 3531454 3532044 + oxidative-stress-resistance chaperone gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16335 YPD4_RS16340 YPD4_2783 YPD4_RS16340 3532112 3533563 - tRNA sulfurtransferase catalyzes the conversion of uridine to 4-thiouridinine tRNA%3B also required for the synthesis of the thiazole moiety gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16340 YPD4_RS16345 YPD4_RS16345 YPD4_RS16345 3533661 3533831 - hypothetical protein gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16345 YPD4_RS16350 YPD4_RS16350 YPD4_RS16350 3533913 3534167 + exodeoxyribonuclease 7 small subunit catalyzes the bidirectional exonucleolytic cleavage of DNA gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16350 YPD4_RS16355 YPD4_2784 YPD4_RS16355 3534172 3535092 + geranyltranstransferase gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16355 YPD4_RS16360 YPD4_2785 YPD4_RS16360 3535248 3537107 + 1-deoxy-D-xylulose-5-phosphate synthase catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16360 YPD4_RS16365 YPD4_2786 YPD4_RS16365 3537286 3537744 - transposase gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16365 YPD4_RS16370 YPD4_RS16370 YPD4_RS16370 3537734 3537898 - invasin gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16370 YPD4_RS16375 YPD4_2787 YPD4_RS16375 3537958 3538443 - phosphatidylglycerophosphatase A hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16375 YPD4_RS16380 YPD4_2788 YPD4_RS16380 3538436 3539425 - thiamine monophosphate kinase gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16380 YPD4_RS16385 YPD4_2789 nusB nusB 3539666 3540082 - N utilization substance protein B homolog Regulates rRNA biosynthesis by transcriptional antitermination gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16385 YPD4_RS16390 YPD4_2790 ribH ribH 3540103 3540573 - 6%2C7-dimethyl-8-ribityllumazine synthase RibE%3B 6%2C7-diimethyl-8-ribityllumazine synthase%3B DMRL synthase%3B lumazine synthase%3B beta subunit of riboflavin synthase%3B condenses 5-amino-6-(1'-D)-ribityl-amino-2%2C4(1H%2C3H)-pyrimidinedione with L-3%2C4-dihydrohy-2-butanone-4-phosphate to generate 6%2C6-dimethyl-8-lumazine (DMRL)%3B riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12)%3B involved in the last steps of riboflavin biosynthesis%3B forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli%3B in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16390 YPD4_RS16395 YPD4_2791 ribD ribD 3540709 3541818 - diaminohydroxyphosphoribosylaminopyrimidine deaminase riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway%3B catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16395 YPD4_RS16400 YPD4_2792 YPD4_RS16400 3541968 3542417 - NrdR family transcriptional regulator gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16400 YPD4_RS16405 YPD4_2793 YPD4_RS16405 3542488 3543081 - membrane protein gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16405 YPD4_RS16410 YPD4_2794 YPD4_RS16410 3543114 3543809 - hypothetical protein gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16410 YPD4_RS16415 YPD4_RS16415 YPD4_RS16415 3544107 3544352 - transposase gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16415 YPD4_RS16420 YPD4_RS16420 YPD4_RS16420 3544349 3544615 - transposase gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16420 YPD4_RS16425 YPD4_2795 YPD4_RS16425 3544771 3545739 - preprotein translocase subunit SecF gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16425 YPD4_RS16430 YPD4_2796 secD secD 3545750 3547564 - preprotein translocase subunit SecD part of the preprotein secretory system%3B when complexed with proteins SecF and YajC%2C SecDFyajC stimulates the proton motive force-driven protein translocation%2C and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16430 YPD4_RS16435 YPD4_2797 yajC yajC 3547625 3547960 - preprotein translocase subunit YajC member of preprotein translocase%3B forms a heterotrimer with SecD and SecF%3B links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16435 YPD4_RS16440 YPD4_2798 tgt tgt 3548072 3549196 - queuine tRNA-ribosyltransferase Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp%2C -Asn%2C -His and -Tyr) gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16440 YPD4_RS16445 YPD4_2799 queA queA 3549289 3550359 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16445 YPD4_RS16450 YPD4_2800 YPD4_RS16450 3550562 3551144 + ACP phosphodiesterase Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16450 YPD4_RS16455 YPD4_2801 YPD4_RS16455 3551443 3552045 + peroxiredoxin gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16455 YPD4_RS16460 YPD4_RS16460 YPD4_RS16460 3552134 3552265 - hypothetical protein gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16460 YPD4_RS16465 YPD4_RS16465 YPD4_RS16465 3552434 3552688 + gamma-glutamyltranspeptidase gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16465 YPD4_RS16470 YPD4_2802 YPD4_RS16470 3552685 3554199 + gamma-glutamyltransferase gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16470 YPD4_RS16475 YPD4_2803 YPD4_RS16475 3554407 3555087 - short-chain dehydrogenase gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16475 YPD4_RS16480 YPD4_2804 YPD4_RS16480 3555242 3557071 - maltodextrin glucosidase gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16480 YPD4_RS16485 YPD4_2805 proY proY 3557632 3559023 - permease cryptic permease that may be involved in the transport of proline across the inner membrane%3B in Salmonella typhimurium%2C the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16485 YPD4_RS16490 YPD4_2806 YPD4_RS16490 3559099 3560418 - branched-chain amino acid transporter 2 carrier protein BrnQ sodium:branched-chain amino acid symporter gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16490 YPD4_RS16495 YPD4_2807 YPD4_RS16495 3560892 3561956 - phosphate ABC transporter substrate-binding protein gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16495 YPD4_RS16500 YPD4_2808 phoR phoR 3561978 3563294 - phosphate regulon sensor protein membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16500 YPD4_RS16505 YPD4_2809 YPD4_RS16505 3563319 3564008 - two-component system response regulator two component response regulator for the phosphate regulon%3B PhoR phosphorylates PhoB gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16505 YPD4_RS16510 YPD4_RS16510 YPD4_RS16510 3564038 3564157 - hypothetical protein gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16510 YPD4_RS16515 YPD4_2810 YPD4_RS16515 3564276 3565520 + exonuclease SbcD with SbcC cleaves DNA hairpin structure%2C also has 5' single-strand endonuclease activity gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16515 YPD4_RS16520 YPD4_2811 YPD4_RS16520 3565517 3569206 + ATP-dependent dsDNA exonuclease gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16520 YPD4_RS16525 YPD4_2812 YPD4_RS16525 3569808 3570722 - fructokinase catalyzes phosphorylation of fructose%3B cytosolic enzyme gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16525 YPD4_RS16530 YPD4_2813 YPD4_RS16530 3571055 3571966 + recombination-associated protein RdgC Required for efficient pilin antigenic variation gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16530 YPD4_RS16535 YPD4_RS16535 YPD4_RS16535 3572202 3572489 - hypothetical protein gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16535 YPD4_RS16540 YPD4_RS16540 YPD4_RS16540 3572553 3572723 - membrane protein gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16540 YPD4_RS16545 YPD4_2814 YPD4_RS16545 3572979 3573503 - shikimate kinase gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16545 YPD4_RS16550 YPD4_2815 YPD4_RS16550 3573750 3574307 - methyltransferase gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16550 YPD4_RS16555 YPD4_RS16555 YPD4_RS16555 3574575 3574790 + hypothetical protein gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16555 YPD4_RS16560 YPD4_2816 YPD4_RS16560 3575037 3575600 - SAM-dependent methyltransferase gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16560 YPD4_RS16565 YPD4_RS16565 YPD4_RS16565 3575804 3576058 - membrane protein gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16565 YPD4_RS16570 YPD4_2817 YPD4_RS16570 3576256 3577005 - flagellar brake protein YcgR gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16570 YPD4_RS16575 YPD4_2818 YPD4_RS16575 3577342 3578601 - gamma-glutamyl phosphate reductase gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16575 YPD4_RS16580 YPD4_2819 YPD4_RS16580 3578611 3579714 - glutamate 5-kinase gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16580 YPD4_RS16585 YPD4_2820 YPD4_RS16585 3579891 3580292 - sigma factor-binding protein Crl gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16585 YPD4_RS16590 YPD4_2821 frsA frsA 3580352 3581599 - fermentation/respiration switch protein forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc%3B FrsA may promote fermentation gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16590 YPD4_RS16595 YPD4_2822 YPD4_RS16595 3581726 3582184 - xanthine phosphoribosyltransferase catalyzes the conversion of guanine%2C xanthine and%2C to a lesser extent%2C hypoxanthine to GMP%2C XMP and IMP%2C respectively gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16595 YPD4_RS16600 YPD4_RS16600 YPD4_RS16600 3582611 3582916 + holin gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16600 YPD4_RS16605 YPD4_2823 YPD4_RS16605 3583113 3584717 + chitin-binding domain protein gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16605 YPD4_RS16610 YPD4_2824 YPD4_RS16610 3585177 3585962 - LysR family transcriptional regulator gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16610 YPD4_RS16615 YPD4_RS16615 YPD4_RS16615 3586810 3586965 - hypothetical protein gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16615 YPD4_RS16620 YPD4_2825 YPD4_RS16620 3587963 3589423 + aminoacyl-histidine dipeptidase catalyzes the hydrolysis of Xaa-His dipeptides gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16620 YPD4_RS16625 YPD4_2826 YPD4_RS16625 3589537 3590595 - DNA polymerase IV involved in translesion DNA polymerization with beta clamp of polymerase III%3B belongs to Y family of polymerases%3B does not contain proofreading function gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16625 YPD4_RS16630 YPD4_2827 YPD4_RS16630 3590951 3591898 + glycerophosphoryl diester phosphodiesterase gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16630 YPD4_RS16635 YPD4_RS16635 YPD4_RS16635 3592142 3592369 - hypothetical protein gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16635 YPD4_RS16640 YPD4_2828 YPD4_RS16640 3592382 3593377 - thiamine biosynthesis lipoprotein ApbE gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16640 YPD4_RS16645 YPD4_2829 YPD4_RS16645 3593445 3594668 - Na+-translocating NADH-quinone reductase subunit F uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16645 YPD4_RS16650 YPD4_2830 YPD4_RS16650 3594684 3595280 - Na+-translocating NADH-quinone reductase subunit E Part of the NQR complex which consists of NqrA%2C NqrB%2C NqrC%2C NqrD%2C NqrE and NqrF%3B NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm%3B NqrE is probably involved in the second step%2C the conversion of ubisemiquinone to ubiquinol. gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16650 YPD4_RS16655 YPD4_2831 YPD4_RS16655 3595287 3595916 - NADH-quinone reductase subunit D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16655 YPD4_RS16660 YPD4_2832 YPD4_RS16660 3595909 3596709 - Na+-translocating NADH-quinone reductase subunit C uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16660 YPD4_RS16665 YPD4_2833 YPD4_RS16665 3596699 3597940 - Na+-translocating NADH-quinone reductase subunit B uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16665 YPD4_RS16670 YPD4_2834 YPD4_RS16670 3597944 3599287 - Na+-translocating NADH-quinone reductase subunit A uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16670 YPD4_RS16675 YPD4_2835 YPD4_RS16675 3599783 3600523 + transpeptidase gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16675 YPD4_RS16680 YPD4_2836 YPD4_RS16680 3600488 3601261 - glutamine amidotransferase gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16680 YPD4_RS16685 YPD4_2837 gmhA gmhA 3601464 3602045 - phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16685 YPD4_RS16690 YPD4_2838 fadE fadE 3602285 3604732 + acyl-CoA dehydrogenase functions in fatty acid oxidation%3B converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16690 YPD4_RS16695 YPD4_2839 YPD4_RS16695 3604904 3605650 - transcriptional regulator gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16695 YPD4_RS16700 YPD4_2840 YPD4_RS16700 3605652 3607505 - glycosyltransferase gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16700 YPD4_RS16705 YPD4_2841 YPD4_RS16705 3607660 3613392 - adhesin gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16705 YPD4_RS16710 YPD4_2842 YPD4_RS16710 3613433 3615223 - hemolysin secretion protein ShlB gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16710 YPD4_RS16715 YPD4_2843 YPD4_RS16715 3616312 3617604 - allantoate amidohydrolase gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16715 YPD4_RS16720 YPD4_2844 YPD4_RS16720 3617604 3618062 - aminotransferase V gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16720 YPD4_RS16725 YPD4_2845 YPD4_RS16725 3618132 3619154 + transposase gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16725 YPD4_RS16730 YPD4_2846 YPD4_RS16730 3619154 3619933 + transposase gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16730 YPD4_RS16735 YPD4_2847 YPD4_RS16735 3619984 3620907 - purine catabolism protein PucG gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16735 YPD4_RS16740 YPD4_2848 YPD4_RS16740 3620939 3621685 - amino acid ABC transporter ATP-binding protein gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16740 YPD4_RS16745 YPD4_2849 YPD4_RS16745 3621666 3622319 - amino acid ABC transporter permease gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16745 YPD4_RS16750 YPD4_2850 YPD4_RS16750 3622316 3622984 - polar amino acid ABC transporter permease gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16750 YPD4_RS16755 YPD4_2851 YPD4_RS16755 3622997 3623785 - amino acid ABC transporter substrate-binding protein gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16755 YPD4_RS16760 YPD4_RS16760 YPD4_RS16760 3623896 3624111 - membrane protein gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16760 YPD4_RS16765 YPD4_2852 YPD4_RS16765 3624113 3624946 - RpiR family transcriptional regulator gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16765 YPD4_RS16770 YPD4_RS16770 YPD4_RS16770 3625256 3625459 + hypothetical protein gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16770 YPD4_RS16775 YPD4_2853 YPD4_RS16775 3625456 3626853 + amidase catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16775 YPD4_RS16780 YPD4_2854 YPD4_RS16780 3626963 3627349 + hypothetical protein gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16780 YPD4_RS16785 YPD4_2855 YPD4_RS16785 3627577 3628776 + sugar transporter gene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16785 YPD4_RS16790 YPD4_2856 YPD4_RS16790 3628936 3629709 + amino acid transporter gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16790 YPD4_RS16795 YPD4_2857 YPD4_RS16795 3629706 3630047 + branched-chain amino acid ABC transporter permease gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16795 YPD4_RS16800 YPD4_2858 YPD4_RS16800 3630219 3630731 + transcriptional regulator DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux%3B negative regulator of the multidrug operon emrAB gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16800 YPD4_RS16805 YPD4_2859 YPD4_RS16805 3631119 3632288 + multidrug transporter with ErmA and TolC forms a multidrug efflux system gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16805 YPD4_RS16810 YPD4_RS16810 emrB emrB 3632327 3633864 + multidrug resistance protein B multidrug MFS transporte%3B with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16810 YPD4_RS16815 YPD4_2862 YPD4_RS16815 3633987 3635153 - methyltransferase gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16815 YPD4_RS16820 YPD4_RS16820 YPD4_RS16820 3635405 3635841 + thioredoxin gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16820 YPD4_RS16825 YPD4_2863 YPD4_RS16825 3636012 3636761 + hypothetical protein gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16825 YPD4_RS16830 YPD4_2864 YPD4_RS16830 3636804 3639446 + acetyltransferase catalyzes the acetylation of lysine gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16830 YPD4_RS16835 YPD4_2865 pssA pssA 3639622 3640977 + phosphatidylserine synthase catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine%3B bounds to the ribosome gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16835 YPD4_RS16840 YPD4_2866 YPD4_RS16840 3641039 3641380 + lipoprotein required for high salt suppression of motility gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16840 YPD4_RS16845 YPD4_RS16845 YPD4_RS16845 3641489 3641680 - hypothetical protein gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16845 YPD4_RS16850 YPD4_RS16850 YPD4_RS16850 3641768 3641883 - 5S ribosomal RNA rRNA gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16850 YPD4_RS16855 YPD4_r9 YPD4_RS16855 3641975 3644908 - 23S ribosomal RNA rRNA gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16855 YPD4_RS16860 YPD4_t46 YPD4_RS16860 3645152 3645227 - tRNA-Glu tRNA gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16860 YPD4_RS16865 YPD4_r10 YPD4_RS16865 3645361 3646909 - 16S ribosomal RNA rRNA gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16865 YPD4_RS16875 YPD4_2868 YPD4_RS16875 3647423 3649995 - Clp protease ClpB gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16875 YPD4_RS16880 YPD4_RS16880 YPD4_RS16880 3650125 3650857 - hypothetical protein gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16880 YPD4_RS16885 YPD4_2871 rluD rluD 3650859 3651836 - ribosomal large subunit pseudouridine synthase D responsible for synthesis of pseudouridine from uracil at positions 1911%2C 1915 and 1917 in 23S ribosomal RNA gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16885 YPD4_RS16890 YPD4_2872 YPD4_RS16890 3651972 3652703 + outer membrane biogenesis protein BamD gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16890 YPD4_RS16895 YPD4_2873 YPD4_RS16895 3653058 3653420 + cold-shock protein associated with 30S ribosomal subunit%3B interferes with translation elongation gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16895 YPD4_RS16900 YPD4_2874 YPD4_RS16900 3653751 3654209 - transposase gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16900 YPD4_RS16905 YPD4_RS16905 YPD4_RS16905 3654199 3654357 - invasin gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16905 YPD4_RS16910 YPD4_2875 pheA pheA 3654492 3655649 + bifunctional chorismate mutase/prephenate dehydratase catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16910 YPD4_RS16915 YPD4_2876 tyrA tyrA 3655754 3656875 - chorismate mutase catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16915 YPD4_RS16920 YPD4_RS16920 YPD4_RS16920 3656888 3657959 - phospho-2-dehydro-3-deoxyheptonate aldolase catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C tyrosine sensitive gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16920 YPD4_RS16925 YPD4_2879 YPD4_RS16925 3658192 3658908 + two-component system response regulator gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16925 YPD4_RS16930 YPD4_2880 YPD4_RS16930 3659400 3660017 + C4-dicarboxylate ABC transporter gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16930 YPD4_RS16935 YPD4_2881 YPD4_RS16935 3660086 3660397 + C4-dicarboxylate ABC transporter gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16935 YPD4_RS16940 YPD4_RS16940 YPD4_RS16940 3660385 3660681 + C4-dicarboxylate ABC transporter gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16940 YPD4_RS16945 YPD4_2882 YPD4_RS16945 3661004 3661771 + hypothetical protein gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16945 YPD4_RS16950 YPD4_2883 YPD4_RS16950 3662074 3662532 - transposase gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16950 YPD4_RS16955 YPD4_RS16955 YPD4_RS16955 3662522 3662677 - invasin gene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16955 YPD4_RS16960 YPD4_2884 YPD4_RS16960 3662744 3663091 - 50S ribosomal protein L19 gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16960 YPD4_RS16965 YPD4_RS16965 trmD trmD 3663172 3663912 - tRNA (guanine-N(1)-)-methyltransferase methylates guanosine-37 in various tRNAs%3B uses S-adenosyl-L-methionine to transfer methyl group to tRNA gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16965 YPD4_RS16970 YPD4_2886 rimM rimM 3663951 3664500 - 16S rRNA-processing protein RimM Essential for efficient processing of 16S rRNA gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16970 YPD4_RS16975 YPD4_RS16975 rpsP rpsP 3664522 3664770 - 30S ribosomal protein S16 binds to lower part of 30S body where it stabilizes two domains%3B required for efficient assembly of 30S%3B in Escherichia coli this protein has nuclease activity gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16975 YPD4_RS16980 YPD4_2887 YPD4_RS16980 3664998 3666359 - signal recognition particle protein gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16980 YPD4_RS16985 YPD4_2888 YPD4_RS16985 3666525 3667316 + membrane protein gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16985 YPD4_RS16990 YPD4_2889 YPD4_RS16990 3667385 3668668 + membrane protein gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16990 YPD4_RS16995 YPD4_2890 YPD4_RS16995 3668806 3669264 - transposase gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS16995 YPD4_RS17000 YPD4_RS17000 YPD4_RS17000 3669254 3669427 - transposase gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17000 YPD4_RS17005 YPD4_2891 YPD4_RS17005 3669468 3669983 - S-ribosylhomocysteine lyase catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17005 YPD4_RS17010 YPD4_2892 YPD4_RS17010 3670151 3671710 - glutamate--cysteine ligase involved in the first step of glutathione biosynthesis gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17010 YPD4_RS17015 YPD4_2893 YPD4_RS17015 3671793 3672221 - membrane protein gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17015 YPD4_RS17020 YPD4_2894 YPD4_RS17020 3672218 3672784 - fructose-1-P/6-phosphogluconate phosphatase YqaB%3B catalyzes the dephosphorylation of fructose 1-phosphate%2C 6-phosphogluconate and p-nitrophenyl phosphate (pNPP)%3B presents beta-phosphoglucomutase activity at a lower extent gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17020 YPD4_RS17025 YPD4_t47 YPD4_RS17025 3673379 3673455 - tRNA-Arg tRNA gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17025 YPD4_RS17030 YPD4_t48 YPD4_RS17030 3673535 3673611 - tRNA-Arg tRNA gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17030 YPD4_RS17035 YPD4_t49 YPD4_RS17035 3673620 3673712 - tRNA-Ser tRNA gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17035 YPD4_RS17040 YPD4_RS17040 YPD4_RS17040 3674075 3674260 - carbon storage regulator homolog affects carbohydrate metabolism%3B has regulatory role in many processes gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17040 YPD4_RS17045 YPD4_2895 YPD4_RS17045 3674510 3677137 - alanine--tRNA ligase gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17045 YPD4_RS17050 YPD4_2896 YPD4_RS17050 3677277 3677840 - regulatory protein RecX gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17050 YPD4_RS17055 YPD4_2897 recA recA 3677978 3679048 - protein RecA catalyzes the hydrolysis of ATP in the presence of single-stranded DNA%2C the ATP-dependent uptake of single-stranded DNA by duplex DNA%2C and the ATP-dependent hybridization of homologous single-stranded DNAs gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17055 YPD4_RS17060 YPD4_2898 YPD4_RS17060 3679163 3679651 - hypothetical protein gene gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17060 YPD4_RS17065 YPD4_2899 YPD4_RS17065 3679968 3681308 + MFS transporter gene gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17065 YPD4_RS17070 YPD4_2900 YPD4_RS17070 3681556 3682500 + DNA-binding transcriptional regulator gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17070 YPD4_RS17075 YPD4_2901 YPD4_RS17075 3682722 3684146 - fucose isomerase gene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17075 YPD4_RS17080 YPD4_2902 YPD4_RS17080 3684167 3685654 - glycerol kinase gene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17080 YPD4_RS17085 YPD4_2903 YPD4_RS17085 3685657 3686601 - transketolase gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17085 YPD4_RS17090 YPD4_2904 YPD4_RS17090 3686594 3687424 - transketolase gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17090 YPD4_RS17095 YPD4_2905 YPD4_RS17095 3687680 3688822 - sugar ABC transporter permease gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17095 YPD4_RS17100 YPD4_2906 YPD4_RS17100 3688822 3690345 - sugar ABC transporter ATP-binding protein gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17100 YPD4_RS17105 YPD4_2907 YPD4_RS17105 3690345 3690962 - lipoprotein gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17105 YPD4_RS17110 YPD4_2908 YPD4_RS17110 3691055 3691996 - sugar ABC transporter substrate-binding protein gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17110 YPD4_RS17115 YPD4_2909 YPD4_RS17115 3692532 3694745 + catalase-peroxidase gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17115 YPD4_RS17120 YPD4_RS17120 YPD4_RS17120 3694822 3695205 + soluble cytochrome b562 1 electron transport protein gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17120 YPD4_RS17125 YPD4_RS17125 YPD4_RS17125 3695353 3695883 + cytochrome b561 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17125 YPD4_RS17130 YPD4_2911 YPD4_RS17130 3696140 3696850 - twin-argninine leader-binding protein DmsD binds to the twin-arginine signal peptides of certain proteins%2C including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17130 YPD4_RS17135 YPD4_2912 YPD4_RS17135 3696996 3697856 - dimethyl sulfoxide reductase subunit C gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17135 YPD4_RS17140 YPD4_2913 YPD4_RS17140 3697858 3698475 - 4Fe-4S ferredoxin oxidoreductase%2C Fe-S subunit%3B terminal electron transfer protein for the reduction of DMSO gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17140 YPD4_RS17145 YPD4_2914 YPD4_RS17145 3698487 3700937 - dimethyl sulfoxide reductase subunit A gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17145 YPD4_RS17150 YPD4_2915 araD araD 3701400 3702095 - L-ribulose-5-phosphate 4-epimerase catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source gene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17150 YPD4_RS17155 YPD4_2916 YPD4_RS17155 3702798 3703607 + DeoR family transcriptional regulator gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17155 YPD4_RS17160 YPD4_2917 YPD4_RS17160 3703768 3704772 + ABC transporter substrate-binding protein gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17160 YPD4_RS17165 YPD4_RS17165 YPD4_RS17165 3705023 3705480 + transposase gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17165 YPD4_RS17170 YPD4_2918 YPD4_RS17170 3705631 3707145 + sugar ABC transporter ATP-binding protein gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17170 YPD4_RS17175 YPD4_2919 YPD4_RS17175 3707138 3708127 + sugar ABC transporter permease gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17175 YPD4_RS17180 YPD4_2920 YPD4_RS17180 3708140 3709177 + sugar ABC transporter permease gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17180 YPD4_RS17185 YPD4_2921 YPD4_RS17185 3709383 3710264 + L-xylulose 5-phosphate 3-epimerase L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated%3B may be involved in the utilization of 2%2C3-diketo-L-gulonate gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17185 YPD4_RS17190 YPD4_2922 YPD4_RS17190 3710275 3711771 + 3-keto-L-gulonate kinase gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17190 YPD4_RS17195 YPD4_2923 YPD4_RS17195 3712169 3713812 + fumarate hydratase catalyzes the formation of malate from fumerate gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17195 YPD4_RS17200 YPD4_RS17200 YPD4_RS17200 3713995 3714246 + hypothetical protein gene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17200 YPD4_RS17205 YPD4_2924 YPD4_RS17205 3714243 3715028 + methionine aminopeptidase type I gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17205 YPD4_RS17210 YPD4_RS17210 YPD4_RS17210 3715038 3715223 - gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17210 YPD4_RS17215 YPD4_2925 YPD4_RS17215 3715386 3716573 - enterotoxin gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17215 YPD4_RS17220 YPD4_2926 YPD4_RS17220 3717006 3717473 - adhesin gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17220 YPD4_RS17225 YPD4_2927 YPD4_RS17225 3717519 3719102 - glycosyl transferase gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17225 YPD4_RS17230 YPD4_RS17230 YPD4_RS17230 3719275 3719526 + hypothetical protein gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17230 YPD4_RS17235 YPD4_RS17235 YPD4_RS17235 3719763 3721143 + cytochrome C peroxidase gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17235 YPD4_RS17240 YPD4_2930 YPD4_RS17240 3721214 3721978 + amino acid ABC transporter substrate-binding protein gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17240 YPD4_RS17245 YPD4_RS17245 YPD4_RS17245 3722402 3722605 + hypothetical protein gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17245 YPD4_RS17250 YPD4_RS17250 YPD4_RS17250 3722816 3723079 + hypothetical protein gene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17250 YPD4_RS17255 YPD4_2931 YPD4_RS17255 3723326 3723667 + ArsR family transcriptional regulator regulates the expression of of the arsRBC involved in resistance to arsenic gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17255 YPD4_RS17260 YPD4_2932 YPD4_RS17260 3723752 3725041 + arylsulfatase gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17260 YPD4_RS17265 YPD4_2933 YPD4_RS17265 3725596 3726567 + transcriptional regulator gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17265 YPD4_RS17270 YPD4_2934 YPD4_RS17270 3726688 3727362 - dihydroxyacetone kinase gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17270 YPD4_RS17275 YPD4_2935 YPD4_RS17275 3727369 3728370 - dihydroxyacetone kinase with DhaL and DhaM forms dihydroxyacetone kinase%2C which is responsible for phosphorylating dihydroxyacetone%3B DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17275 YPD4_RS17280 YPD4_2936 YPD4_RS17280 3728457 3729227 - short-chain dehydrogenase gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17280 YPD4_RS17285 YPD4_2937 YPD4_RS17285 3729291 3730406 - iditol 2-dehydrogenase gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17285 YPD4_RS17290 YPD4_2938 YPD4_RS17290 3730889 3731344 + ribose 5-phosphate isomerase gene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17290 YPD4_RS17295 YPD4_RS17295 YPD4_RS17295 3731507 3731641 - hypothetical protein gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17295 YPD4_RS17300 YPD4_2939 YPD4_RS17300 3732138 3734693 + DNA mismatch repair protein MutS This protein performs the mismatch recognition step during the DNA repair process gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17300 YPD4_RS17305 YPD4_2940 YPD4_RS17305 3735045 3736043 - RNA polymerase sigma factor RpoS sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor controls a regulon of genes required for protection against external stresses gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17305 YPD4_RS17310 YPD4_2941 YPD4_RS17310 3736098 3737081 - lipoprotein nlpD gene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17310 YPD4_RS17315 YPD4_2942 pcm pcm 3737203 3737829 - protein-L-isoaspartate O-methyltransferase catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins gene gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17315 YPD4_RS17320 YPD4_2943 surE surE 3737823 3738587 - 5'/3'-nucleotidase SurE broad specificity 5'(3')-nucleotidase and polyphosphatase gene gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17320 YPD4_RS17325 YPD4_2944 truD truD 3738565 3739614 - tRNA pseudouridine synthase D catalyzes the modification of U13 in tRNA(Glu) gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17325 YPD4_RS17330 YPD4_2945 ispF ispF 3739625 3740113 - 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17330 YPD4_RS17335 YPD4_2946 YPD4_RS17335 3740252 3740977 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17335 YPD4_RS17340 YPD4_2947 YPD4_RS17340 3740981 3741301 - cell division protein FtsB gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17340 YPD4_RS17345 YPD4_2948 YPD4_RS17345 3741615 3741932 - membrane protein gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17345 YPD4_RS17350 YPD4_2949 YPD4_RS17350 3742123 3742764 - adenylyl-sulfate kinase converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17350 YPD4_RS17355 YPD4_2950 cysN cysN 3742766 3744202 - sulfate adenylyltransferase subunit 1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step%3B forms a heterodimer with CysD%3B part of the GTP-binding elongation factor family CysN/NodQ gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17355 YPD4_RS17360 YPD4_2951 YPD4_RS17360 3744295 3745203 - sulfate adenylyltransferase subunit 2 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17360 YPD4_RS17365 YPD4_2952 YPD4_RS17365 3745214 3746632 - sirohydrochlorin ferrochelatase gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17365 YPD4_RS17370 YPD4_RS17370 YPD4_RS17370 3746933 3747128 - hypothetical protein gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17370 YPD4_RS17375 YPD4_RS17375 YPD4_RS17375 3747221 3747421 + hypothetical protein gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17375 YPD4_RS17380 YPD4_RS17380 YPD4_RS17380 3747596 3748003 + hypothetical protein gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17380 YPD4_RS17385 YPD4_RS17385 YPD4_RS17385 3748246 3748972 - phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17385 YPD4_RS17390 YPD4_2955 YPD4_RS17390 3748969 3750699 - sulfite reductase subunit beta hemoprotein%3B NADPH dependent%3B with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide gene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17390 YPD4_RS17395 YPD4_2956 cysJ cysJ 3750699 3752519 - sulfite reductase subunit alpha catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate%3B a flavoprotein with flavin reductase activity gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17395 YPD4_RS17400 YPD4_2957 YPD4_RS17400 3752912 3753271 + 6-carboxy-5%2C6%2C7%2C8-tetrahydropterin synthase gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17400 YPD4_RS17405 YPD4_2958 YPD4_RS17405 3753505 3754176 - 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17405 YPD4_RS17410 YPD4_2959 YPD4_RS17410 3754280 3754885 - superoxide dismutase gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17410 YPD4_RS17415 YPD4_2960 eno eno 3755257 3756552 - enolase catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17415 YPD4_RS17420 YPD4_2961 pyrG pyrG 3756633 3758270 - CTP synthase CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17420 YPD4_RS17425 YPD4_2962 mazG mazG 3758482 3759324 - nucleoside triphosphate pyrophosphohydrolase functions in degradation of stringent response intracellular messenger ppGpp%3B in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF%3B activity of MazG is inhibited by MazEF in vitro%3B ppGpp inhibits mazEF expression%3B MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation%3B MazG also interacts with the GTPase protein Era gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17425 YPD4_RS17430 YPD4_RS17430 YPD4_RS17430 3759331 3759489 - hypothetical protein gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17430 YPD4_RS17435 YPD4_2963 relA relA 3759526 3761760 - GTP pyrophosphokinase (p)ppGpp synthetase%3B catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17435 YPD4_RS17440 YPD4_2964 YPD4_RS17440 3762204 3764987 + sensor histidine kinase part of the two-component regulatory system with UvrY%3B involved in the regulation of carbon metabolism via the csrA/csrB regulatory system gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17440 YPD4_RS17445 YPD4_RS17445 YPD4_RS17445 3765146 3766592 - serine endoprotease protease Do%3B required at high temperature%3B degrades damaged proteins gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17445 YPD4_RS17450 YPD4_2967 YPD4_RS17450 3766790 3768310 - deoxyguanosinetriphosphate triphosphohydrolase gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17450 YPD4_RS17455 YPD4_2968 YPD4_RS17455 3768604 3769305 + 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17455 YPD4_RS17460 YPD4_2969 YPD4_RS17460 3769305 3770148 + Vitamin B12-binding protein gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17460 YPD4_RS17465 YPD4_2970 YPD4_RS17465 3770148 3770762 + hypothetical protein gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17465 YPD4_RS17470 YPD4_2971 YPD4_RS17470 3771047 3771391 - iron-sulfur cluster insertion protein ErpA essential respiratory protein A%3B may be involved in the transfer of iron-sulfur clusters%3B essential for growth using oxygen or alternate electron acceptors gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17470 YPD4_RS17475 YPD4_2972 YPD4_RS17475 3771527 3772963 - H+/Cl- exchange transporter ClcA gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17475 YPD4_RS17480 YPD4_2973 YPD4_RS17480 3773344 3774624 + glutamate-1-semialdehyde 2%2C1-aminomutase Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17480 YPD4_RS17485 YPD4_2974 YPD4_RS17485 3774998 3776995 - iron-hydroxamate transporter permease subunit gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17485 YPD4_RS17490 YPD4_2975 YPD4_RS17490 3776992 3777903 - iron-hydroxamate transporter substrate-binding subunit gene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17490 YPD4_RS17495 YPD4_RS17495 YPD4_RS17495 3777897 3778124 + hypothetical protein gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17495 YPD4_RS17500 YPD4_2976 YPD4_RS17500 3778080 3778874 - iron-hydroxamate transporter ATP-binding protein part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17500 YPD4_RS17505 YPD4_2977 mrcB mrcB 3779195 3781669 - bifunctional glycosyl transferase/transpeptidase penicillin-binding protein 1b%3B contains transglycosylase and transpeptidase activity%3B major enzyme for peptidoglycan biosynthesis in Escherichia coli%3B transmembrane protein%3B forms dimers%3B three variants%2C one of which may be a degradation product%2C while the other appears to result from an alternative initiation site%2C are found within the cell gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17505 YPD4_RS17510 YPD4_2978 YPD4_RS17510 3781778 3784339 - RNA helicase similar in sequence to the ATP-dependent RNA helicase HrpA gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17510 YPD4_RS17515 YPD4_2979 YPD4_RS17515 3784380 3784955 + 2'-5' RNA ligase gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17515 YPD4_RS17520 YPD4_2980 YPD4_RS17520 3785068 3785805 + sugar fermentation stimulation protein homolog gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17520 YPD4_RS17525 YPD4_RS17525 dksA dksA 3785975 3786430 + transcriptional regulator gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17525 YPD4_RS17530 YPD4_2982 YPD4_RS17530 3786710 3787675 + glutamyl-Q tRNA(Asp) ligase gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17530 YPD4_RS17535 YPD4_2983 pcnB pcnB 3787818 3789239 + poly(A) polymerase I Polymerase that creates the 3' poly(A) tail found in some mRNA's gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17535 YPD4_RS17540 YPD4_2984 YPD4_RS17540 3789247 3789726 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17540 YPD4_RS17545 YPD4_2985 panB panB 3789995 3790792 + 3-methyl-2-oxobutanoate hydroxymethyltransferase catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5%2C10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17545 YPD4_RS17550 YPD4_2986 panC panC 3790880 3791734 + pantothenate synthetase catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17550 YPD4_RS17555 YPD4_2987 YPD4_RS17555 3792145 3792525 + aspartate 1-decarboxylase gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17555 YPD4_RS17560 YPD4_RS17560 YPD4_RS17560 3792674 3793988 - hypothetical protein gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17560 YPD4_RS17565 YPD4_2989 YPD4_RS17565 3794195 3794965 - membrane protein gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17565 YPD4_RS17570 YPD4_2990 YPD4_RS17570 3794962 3795888 - ABC transporter ATP-binding protein gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17570 YPD4_RS17575 YPD4_2991 YPD4_RS17575 3796124 3796786 + carbonic anhydrase catalyzes the interconversion of bicarbonate and carbon dioxide gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17575 YPD4_RS17580 YPD4_2992 YPD4_RS17580 3796940 3797476 - hypoxanthine phosphoribosyltransferase catalyzes the formation of inosine monophosphate from hypoxanthine and 5-phospho-alpha-D-ribose 1-diphosphate gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17580 YPD4_RS17585 YPD4_2993 YPD4_RS17585 3797696 3799297 - blue copper oxidase CueO laccase%3B copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17585 YPD4_RS17590 YPD4_2994 YPD4_RS17590 3799614 3799961 + hypothetical protein gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17590 YPD4_RS17595 YPD4_2995 YPD4_RS17595 3800078 3800968 + polyamine aminopropyltransferase gene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17595 YPD4_RS17600 YPD4_2996 YPD4_RS17600 3801046 3801840 + S-adenosylmethionine decarboxylase proenzyme S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17600 YPD4_RS17605 YPD4_2997 YPD4_RS17605 3802278 3803186 + aromatic amino acid exporter gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17605 YPD4_RS17610 YPD4_2998 YPD4_RS17610 3803297 3803656 - hypothetical protein gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17610 YPD4_RS17615 YPD4_2999 YPD4_RS17615 3803955 3806552 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17615 YPD4_RS17620 YPD4_3000 YPD4_RS17620 3807122 3807631 - transposase gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17620 YPD4_RS17625 YPD4_RS17625 YPD4_RS17625 3807570 3807725 - invasin gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17625 YPD4_RS17630 YPD4_3001 YPD4_RS17630 3807823 3809247 - dihydrolipoamide dehydrogenase E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex%3B catalyzes the oxidation of dihydrolipoamide to lipoamide gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17630 YPD4_RS17635 YPD4_3002 aceF aceF 3809553 3811082 - dihydrolipoamide acetyltransferase E2 component of pyruvate dehydrogenase multienzyme complex%3B in Escherichia coli AceF contains three N-terminal lipoyl domains gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17635 YPD4_RS17640 YPD4_3003 aceE aceE 3811096 3813759 - pyruvate dehydrogenase E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17640 YPD4_RS17645 YPD4_3004 pdhR pdhR 3813955 3814719 - transcriptional regulator activates lctPRD operon%3B autoregulates itself through repression of pdhR-aceEF-lpdA operon%3B regulates pyruvate dehydrogenase complex gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17645 YPD4_RS17650 YPD4_3005 YPD4_RS17650 3815582 3816979 + aromatic amino acid transporter gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17650 YPD4_RS17655 YPD4_3006 YPD4_RS17655 3817397 3818251 - hypothetical protein involved in regulation of beta-lactamase%3B putative signaling protein gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17655 YPD4_RS17660 YPD4_3007 YPD4_RS17660 3818524 3819075 - N-acetyl-anhydromuranmyl-L-alanine amidase gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17660 YPD4_RS17665 YPD4_3008 YPD4_RS17665 3819188 3820096 + nicotinate-nucleotide pyrophosphorylase catalyzes the formation of pyridine-2%2C3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17665 YPD4_RS17670 YPD4_3009 YPD4_RS17670 3820299 3820763 + major pilin subunit gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17670 YPD4_RS17675 YPD4_3010 YPD4_RS17675 3820756 3822294 + transporter HofB gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17675 YPD4_RS17680 YPD4_3011 YPD4_RS17680 3822291 3823490 + type II secretion protein F gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17680 YPD4_RS17685 YPD4_3012 YPD4_RS17685 3823885 3824928 - GMP reductase catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17685 YPD4_RS17690 YPD4_RS17690 YPD4_RS17690 3825014 3825214 + hypothetical protein gene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17690 YPD4_RS17695 YPD4_3013 coaE coaE 3825224 3825844 + dephospho-CoA kinase catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A%3B involved in coenzyme A biosynthesis gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17695 YPD4_RS17700 YPD4_3014 YPD4_RS17700 3825841 3826593 + cell division protein ZapD gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17700 YPD4_RS17705 YPD4_RS17705 YPD4_RS17705 3826779 3826985 + DNA gyrase inhibitor YacG inhibits supercoiling by DNA gyrase by binding to the GyrB subunit gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17705 YPD4_RS17710 YPD4_3015 YPD4_RS17710 3827175 3827687 - transposase gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17710 YPD4_RS17715 YPD4_3016 YPD4_RS17715 3827744 3828766 + transposase gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17715 YPD4_RS17720 YPD4_3017 YPD4_RS17720 3828763 3829545 + transposase gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17720 YPD4_RS17725 YPD4_3018 YPD4_RS17725 3829596 3830705 - histidine kinase gene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17725 YPD4_RS17730 YPD4_3019 YPD4_RS17730 3830698 3832608 - hypothetical protein gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17730 YPD4_RS17735 YPD4_3020 YPD4_RS17735 3832762 3834021 - integrase gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17735 YPD4_RS17740 YPD4_t50 YPD4_RS17740 3834220 3834304 - tRNA-Leu tRNA gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17740 YPD4_RS17745 YPD4_3021 YPD4_RS17745 3834409 3835485 - LPS export ABC transporter permease LptG with LptABCF is involved in the transport of lipopolysaccharides gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17745 YPD4_RS17750 YPD4_RS17750 YPD4_RS17750 3835485 3836580 - lipopolysaccharide ABC transporter permease with LptBGC is involved in lipopolysaccharide export gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17750 YPD4_RS17755 YPD4_3024 YPD4_RS17755 3836860 3838371 + cytosol aminopeptidase catalyzes the removal of N-terminal amino acids preferably from various peptides%3B a cyteinylglycinase%2C transcription regulator and site-specific recombination factor gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17755 YPD4_RS17760 YPD4_3025 YPD4_RS17760 3838522 3838971 + DNA polymerase III subunit chi binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17760 YPD4_RS17765 YPD4_3026 YPD4_RS17765 3838984 3841881 + valine--tRNA ligase gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17765 YPD4_RS17770 YPD4_3027 YPD4_RS17770 3842024 3842527 + acetyltransferase gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17770 YPD4_RS17775 YPD4_3028 YPD4_RS17775 3843034 3843465 - RNase E inhibitor protein gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17775 YPD4_RS17780 YPD4_3029 YPD4_RS17780 3843677 3844684 + ornithine carbamoyltransferase catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17780 YPD4_RS17785 YPD4_3030 YPD4_RS17785 3844991 3845449 - hypothetical protein gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17785 YPD4_RS17790 YPD4_RS17790 YPD4_RS17790 3846088 3847655 + ABC transporter substrate-binding protein gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17790 YPD4_RS17795 YPD4_3033 YPD4_RS17795 3847751 3848800 + peptide ABC transporter permease gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17795 YPD4_RS17800 YPD4_3034 YPD4_RS17800 3848819 3849655 + peptide ABC transporter permease gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17800 YPD4_RS17805 YPD4_3035 YPD4_RS17805 3849648 3850526 + ABC transporter ATP-binding protein gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17805 YPD4_RS17810 YPD4_3036 YPD4_RS17810 3850513 3851229 + peptide ABC transporter ATP-binding protein gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17810 YPD4_RS17815 YPD4_3037 YPD4_RS17815 3851663 3853801 + ribonucleoside triphosphate reductase Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17815 YPD4_RS17820 YPD4_RS17820 YPD4_RS17820 3853978 3854442 + anaerobic ribonucleoside-triphosphate reductase activating protein activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17820 YPD4_RS17825 YPD4_3039 YPD4_RS17825 3854770 3855495 + phosphonate metabolism transcriptional regulator PhnF may be involved in phosphonate uptake and biodegradation gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17825 YPD4_RS17830 YPD4_3040 YPD4_RS17830 3855496 3855972 + phosphonate metabolism protein PhnG gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17830 YPD4_RS17835 YPD4_3041 phnH phnH 3855972 3856598 + phosphonate C-P lyase system protein PhnH gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17835 YPD4_RS17840 YPD4_3042 YPD4_RS17840 3856598 3857776 + carbon-phosphorus lyase complex subunit PhnI required for the use of phosphonate and phosphite gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17840 YPD4_RS17845 YPD4_3043 YPD4_RS17845 3857769 3858650 + carbon-phosphorus lyase complex subunit PhnJ required for use of phosphonate and phosphite gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17845 YPD4_RS17850 YPD4_3044 phnK phnK 3858650 3859441 + phosphonate C-P lyase gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17850 YPD4_RS17855 YPD4_3045 YPD4_RS17855 3859830 3860549 + phosphonate ABC transporter ATP-binding protein gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17855 YPD4_RS17860 YPD4_3046 YPD4_RS17860 3860546 3861682 + phosphonate metabolism protein PhnM gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17860 YPD4_RS17865 YPD4_3047 YPD4_RS17865 3861682 3862263 + ribose 1%2C5-bisphosphate phosphokinase PhnN gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17865 YPD4_RS17870 YPD4_3048 phnP phnP 3862254 3863006 + phosphonate metabolism protein PhnP required for the use of phosphonates and phosphite as phosphorus sources gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17870 YPD4_RS17875 YPD4_3049 YPD4_RS17875 3863019 3863657 - hypothetical protein gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17875 YPD4_RS17880 YPD4_3050 YPD4_RS17880 3863809 3864252 - hypothetical protein gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17880 YPD4_RS17885 YPD4_3051 YPD4_RS17885 3864351 3865517 - alginate lyase gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17885 YPD4_RS17890 YPD4_3052 YPD4_RS17890 3865532 3866626 - sugar ABC transporter ATP-binding protein gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17890 YPD4_RS17895 YPD4_3053 YPD4_RS17895 3866638 3867477 - sugar ABC transporter permease gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17895 YPD4_RS17900 YPD4_3054 YPD4_RS17900 3867496 3868380 - sugar ABC transporter permease gene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17900 YPD4_RS17905 YPD4_3055 YPD4_RS17905 3868388 3869701 - sugar ABC transporter substrate-binding protein gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17905 YPD4_RS17910 YPD4_3056 YPD4_RS17910 3870262 3871485 + alginate lyase gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17910 YPD4_RS17915 YPD4_3057 YPD4_RS17915 3871509 3873527 + alginate lyase gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17915 YPD4_RS17920 YPD4_RS17920 YPD4_RS17920 3873758 3874045 + nuclease gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17920 YPD4_RS17925 YPD4_3058 YPD4_RS17925 3874220 3874726 - acetyltransferase gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17925 YPD4_RS17930 YPD4_3059 YPD4_RS17930 3874720 3875241 - SCP-2 sterol transfer family protein gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17930 YPD4_RS17935 YPD4_RS17935 YPD4_RS17935 3875322 3875447 + hypothetical protein gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17935 YPD4_RS17940 YPD4_3060 YPD4_RS17940 3875557 3876552 + protease gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17940 YPD4_RS17945 YPD4_3061 YPD4_RS17945 3876564 3877442 + protease gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17945 YPD4_RS17950 YPD4_3062 YPD4_RS17950 3877583 3878989 - multidrug transporter gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17950 YPD4_RS17955 YPD4_3063 YPD4_RS17955 3878991 3882116 - multidrug efflux RND transporter permease subunit gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17955 YPD4_RS17960 YPD4_3064 YPD4_RS17960 3882120 3883280 - acriflavine resistance protein E gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17960 YPD4_RS17965 YPD4_3065 YPD4_RS17965 3883788 3884843 + hypothetical protein gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17965 YPD4_RS17970 YPD4_3066 YPD4_RS17970 3885098 3885409 - transcriptional regulator gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17970 YPD4_RS17975 YPD4_RS17975 YPD4_RS17975 3885433 3885801 - hypothetical protein gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17975 YPD4_RS17980 YPD4_RS17980 YPD4_RS17980 3885844 3886017 - membrane protein gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17980 YPD4_RS17985 YPD4_3067 YPD4_RS17985 3886037 3888031 - DEAD/DEAH box family ATP-dependent RNA helicase participates in the assembly of the large subunit of the ribosome%3B plays a key role in optimal cell growth at low temperature and is required for normal cell division gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17985 YPD4_RS17990 YPD4_3068 YPD4_RS17990 3888218 3889102 - lipoprotein NlpI lipoprotein that appears to be involved in cell division%3B interacts with the periplasmic protease Prc and may be activated by protease processing gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17990 YPD4_RS17995 YPD4_3069 YPD4_RS17995 3889227 3891344 - polyribonucleotide nucleotidyltransferase gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS17995 YPD4_RS18000 YPD4_3070 YPD4_RS18000 3891611 3892396 - integrase gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18000 YPD4_RS18005 YPD4_3071 YPD4_RS18005 3892450 3892965 - transposase gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18005 YPD4_RS18010 YPD4_3072 YPD4_RS18010 3893016 3893759 + type VI secretion protein ImpG gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18010 YPD4_RS18015 YPD4_3073 YPD4_RS18015 3893723 3894811 + type VI secretion protein gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18015 YPD4_RS18020 YPD4_3074 YPD4_RS18020 3894937 3896253 + phosphopeptide-binding protein gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18020 YPD4_RS18025 YPD4_3075 YPD4_RS18025 3896253 3896798 + lipoprotein gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18025 YPD4_RS18030 YPD4_3076 YPD4_RS18030 3896801 3898147 + hypothetical protein gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18030 YPD4_RS18035 YPD4_3077 YPD4_RS18035 3898162 3898914 + chemotaxis protein MotB gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18035 YPD4_RS18040 YPD4_3078 YPD4_RS18040 3898925 3901528 + ATP-dependent Clp protease ClpV gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18040 YPD4_RS18045 YPD4_3079 YPD4_RS18045 3901525 3902322 + Fis family transcriptional regulator gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18045 YPD4_RS18050 YPD4_3080 YPD4_RS18050 3902319 3903005 + type VI secretion protein gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18050 YPD4_RS18055 YPD4_3081 YPD4_RS18055 3903011 3904399 + membrane protein gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18055 YPD4_RS18060 YPD4_3082 YPD4_RS18060 3904431 3907964 + type VI secretion protein IcmF gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18060 YPD4_RS18065 YPD4_3083 YPD4_RS18065 3908089 3908871 + membrane protein gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18065 YPD4_RS18070 YPD4_3084 YPD4_RS18070 3908868 3909401 + membrane protein gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18070 YPD4_RS18075 YPD4_3085 YPD4_RS18075 3909423 3911825 + type VI secretion protein Vgr gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18075 YPD4_RS18080 YPD4_3086 YPD4_RS18080 3911831 3912289 + hypothetical protein gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18080 YPD4_RS18085 YPD4_3087 YPD4_RS18085 3912282 3915146 + hypothetical protein gene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18085 YPD4_RS18090 YPD4_3088 YPD4_RS18090 3915174 3916544 + type IV secretion protein Rhs gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18090 YPD4_RS18095 YPD4_3089 YPD4_RS18095 3916546 3917031 + hypothetical protein gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18095 YPD4_RS18100 YPD4_RS18100 YPD4_RS18100 3917081 3917224 - hypothetical protein gene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18100 YPD4_RS18105 YPD4_RS18105 YPD4_RS18105 3917348 3917572 - hypothetical protein gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18105 YPD4_RS18110 YPD4_3090 YPD4_RS18110 3917654 3918061 - transcriptional regulator gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18110 YPD4_RS18120 YPD4_3091 YPD4_RS18120 3918422 3920620 + type VI secretion protein Vgr gene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18120 YPD4_RS18125 YPD4_3092 YPD4_RS18125 3920623 3921045 + hypothetical protein gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18125 YPD4_RS18130 YPD4_3093 YPD4_RS18130 3921090 3925628 + hypothetical protein gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18130 YPD4_RS18135 YPD4_3094 YPD4_RS18135 3925637 3926431 + hypothetical protein gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18135 YPD4_RS18140 YPD4_3095 YPD4_RS18140 3926778 3927677 - xylose isomerase gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18140 YPD4_RS18145 YPD4_3096 YPD4_RS18145 3927674 3928804 - oxidoreductase gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18145 YPD4_RS18150 YPD4_3097 YPD4_RS18150 3929074 3929940 + AraC family transcriptional regulator gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18150 YPD4_RS18155 YPD4_3098 YPD4_RS18155 3930102 3930605 - carbohydrate transporter gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18155 YPD4_RS18160 YPD4_3099 YPD4_RS18160 3930611 3931540 - carbohydrate kinase gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18160 YPD4_RS18165 YPD4_3100 YPD4_RS18165 3931697 3932398 - deoxyribose-phosphate aldolase gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18165 YPD4_RS18170 YPD4_3101 YPD4_RS18170 3932869 3933450 + FMN reductase gene gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18170 YPD4_RS18175 YPD4_3102 YPD4_RS18175 3933465 3934601 + sulfonate ABC transporter substrate-binding protein gene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18175 YPD4_RS18180 YPD4_3103 YPD4_RS18180 3934620 3935768 + alkanesulfonate monooxygenase catalyzes the release of sulfite from alkanesulfonates gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18180 YPD4_RS18185 YPD4_3104 ssuC ssuC 3935780 3936574 + sulfonate ABC transporter part of the ABC type transport system for alkanesulfonate SsuABC%3B SsuB the ATP-binding subunit and SsuC the permease gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18185 YPD4_RS18190 YPD4_3105 ssuB ssuB 3936571 3937386 + aliphatic sulfonate ABC transporter ATP-binding protein part of the ABC type transport system SsuABC for aliphatic sulfonates%3B with SsuA being the periplasmic substrate-binding subunit%2C SsuB the ATP-binding subunit and SsuC the permease gene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18190 YPD4_RS18195 YPD4_RS18195 YPD4_RS18195 3938005 3938208 - DNA-damage-inducible protein J gene gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18195 YPD4_RS18200 YPD4_3106 YPD4_RS18200 3938662 3940017 + xanthine/uracil permease gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18200 YPD4_RS18205 YPD4_3107 YPD4_RS18205 3940366 3942015 + sodium:proton antiporter gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18205 YPD4_RS18210 YPD4_3108 YPD4_RS18210 3942233 3943420 - hypothetical protein gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18210 YPD4_RS18215 YPD4_3109 YPD4_RS18215 3943572 3944492 - lipid A biosynthesis palmitoleoyl acyltransferase Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18215 YPD4_RS18220 YPD4_3110 YPD4_RS18220 3945286 3946275 + LacI family transcriptional regulator gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18220 YPD4_RS18225 YPD4_3111 YPD4_RS18225 3946479 3947975 + ABC transporter ATP-binding protein gene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18225 YPD4_RS18230 YPD4_3112 YPD4_RS18230 3947968 3948957 + sugar ABC transporter permease gene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18230 YPD4_RS18235 YPD4_3113 YPD4_RS18235 3948959 3949912 + ABC transporter permease gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18235 YPD4_RS18240 YPD4_3114 YPD4_RS18240 3949931 3951568 + ribulokinase gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18240 YPD4_RS18245 YPD4_3115 YPD4_RS18245 3951565 3952170 + phosphosugar isomerase gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18245 YPD4_RS18250 YPD4_3116 YPD4_RS18250 3952360 3953211 - S-transferase YghU%3B B2989%3B one of eight putative glutathione transferase proteins from E. coli gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18250 YPD4_RS18255 YPD4_3117 YPD4_RS18255 3953465 3954811 + hypothetical protein gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18255 YPD4_RS18260 YPD4_3118 YPD4_RS18260 3954918 3956093 - DNA repair ATPase gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18260 YPD4_RS18265 YPD4_RS18265 YPD4_RS18265 3956332 3956508 + transposase gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18265 YPD4_RS18270 YPD4_3119 YPD4_RS18270 3956447 3956956 + transposase gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18270 YPD4_RS18275 YPD4_RS18275 YPD4_RS18275 3957139 3957351 - cold-shock protein gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18275 YPD4_RS18280 YPD4_RS18280 YPD4_RS18280 3957611 3957823 - cold-shock protein gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18280 YPD4_RS18285 YPD4_RS18285 YPD4_RS18285 3957916 3958065 - hypothetical protein gene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18285 YPD4_RS18290 YPD4_3120 YPD4_RS18290 3958356 3958823 - hypothetical protein gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18290 YPD4_RS18295 YPD4_3121 YPD4_RS18295 3959299 3960111 + MBL fold hydrolase gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18295 YPD4_RS18300 YPD4_3122 YPD4_RS18300 3960176 3961066 + 2-hydroxy-3-oxopropionate reductase gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18300 YPD4_RS18305 YPD4_3123 YPD4_RS18305 3961244 3961639 + gamma carboxymuconolactone decarboxylase gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18305 YPD4_RS18310 YPD4_RS18310 YPD4_RS18310 3961793 3963156 + MFS transporter gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18310 YPD4_RS18315 YPD4_3126 YPD4_RS18315 3963246 3963908 + GntR family transcriptional regulator gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18315 YPD4_RS18320 YPD4_3127 YPD4_RS18320 3963974 3964450 + hypothetical protein gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18320 YPD4_RS18325 YPD4_RS18325 fis fis 3965204 3965500 - Fis family transcriptional regulator Stimulates excision of phage lambda%3B affects Mu development%3B acts as an activator of rRNA and iRNA transcription gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18325 YPD4_RS18330 YPD4_3128 YPD4_RS18330 3965525 3966490 - tRNA-dihydrouridine synthase B gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18330 YPD4_RS18335 YPD4_3129 prmA prmA 3967079 3967960 - ribosomal protein L11 methyltransferase methylates ribosomal protein L11 at multiple amino acid positions%3B mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18335 YPD4_RS18340 YPD4_3130 panF panF 3968036 3969490 - sodium:pantothenate symporter mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions%3B member of SSS family of sodium/solute symporters%3B the imported panthothenate is phosphorylated by panthothenate kinase gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18340 YPD4_RS18345 YPD4_RS18345 YPD4_RS18345 3969480 3969722 - membrane protein gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18345 YPD4_RS18350 YPD4_3131 YPD4_RS18350 3971080 3972429 - acetyl-CoA carboxylase biotin carboxylase subunit an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase%2C an enzyme that catalyzes the formation of malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18350 YPD4_RS18355 YPD4_3132 YPD4_RS18355 3972441 3972905 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex%2C the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18355 YPD4_RS18360 YPD4_3133 YPD4_RS18360 3973063 3973515 - 3-dehydroquinate dehydratase gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18360 YPD4_RS18365 YPD4_3134 YPD4_RS18365 3973778 3974398 - sulfoxide reductase heme-binding subunit YedZ in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY%3B sulfite oxidase activity not demonstrated%3B contains heme gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18365 YPD4_RS18370 YPD4_3135 YPD4_RS18370 3974398 3975498 - sulfoxide reductase catalytic subunit YedY in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase%3B requires inner membrane anchor protein YedZ gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18370 YPD4_RS18375 YPD4_3136 YPD4_RS18375 3975721 3976698 - quinone oxidoreductase gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18375 YPD4_RS18380 YPD4_3137 YPD4_RS18380 3977099 3979015 + hypothetical protein regulates the degradation of the small RNAs CsrB and CsrC%3B may function to targate RNase E to specific RNA molecules gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18380 YPD4_RS18385 YPD4_3138 YPD4_RS18385 3979353 3980396 + rod shape-determining protein MreB gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18385 YPD4_RS18390 YPD4_3139 YPD4_RS18390 3980600 3981595 + rod shape-determining protein MreC gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18390 YPD4_RS18395 YPD4_3140 YPD4_RS18395 3981592 3982080 + rod shape-determining protein MreD part of cell wall structural complex MreBCD%3B transmembrane component gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18395 YPD4_RS18400 YPD4_3141 YPD4_RS18400 3982094 3982687 + septum formation inhibitor Maf Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18400 YPD4_RS18405 YPD4_3142 YPD4_RS18405 3982677 3984146 + ribonuclease G involved in the processing of the 5'end of 16S rRNA gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18405 YPD4_RS18410 YPD4_3143 YPD4_RS18410 3984261 3988163 + membrane protein gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18410 YPD4_RS18415 YPD4_3144 YPD4_RS18415 3988160 3989029 + amidohydrolase gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18415 YPD4_RS18420 YPD4_3145 tldD tldD 3989041 3990486 + protease TldD responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17%2C an exported protein that targets the essential topoisomerase II DNA gyrase%3B degrades the E. coli plasmid F-encoded CcdA gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18420 YPD4_RS18425 YPD4_3146 YPD4_RS18425 3990689 3993547 - toxin gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18425 YPD4_RS18430 YPD4_3147 YPD4_RS18430 3993572 3996403 - toxin gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18430 YPD4_RS18440 YPD4_3148 YPD4_RS18440 3996604 3996963 - hypothetical protein gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18440 YPD4_RS18445 YPD4_3149 YPD4_RS18445 3996960 3997361 - peptidase M15 gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18445 YPD4_RS18450 YPD4_3150 YPD4_RS18450 3997374 3997676 - hypothetical protein gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18450 YPD4_RS18455 YPD4_3151 YPD4_RS18455 3997810 4002300 - toxin gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18455 YPD4_RS18460 YPD4_3152 YPD4_RS18460 4002357 4004498 - toxin subunit gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18460 YPD4_RS18465 YPD4_3153 YPD4_RS18465 4004567 4005949 - toxin subunit gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18465 YPD4_RS18470 YPD4_3154 YPD4_RS18470 4005990 4008491 - toxin gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18470 YPD4_RS18475 YPD4_3155 YPD4_RS18475 4008727 4009593 - LysR family transcriptional regulator gene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18475 YPD4_RS18480 YPD4_3156 YPD4_RS18480 4009854 4010765 - transcriptional regulator for aaeXAB operon gene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18480 YPD4_RS18485 YPD4_RS18485 YPD4_RS18485 4011068 4011271 + protein AaeX membrane protein AaeX%3B the gene is a member of the aaeXAB operon gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18485 YPD4_RS18490 YPD4_3157 YPD4_RS18490 4011279 4012214 + p-hydroxybenzoic acid efflux pump subunit AaeA with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid%2C 6-hydroxy-2-naphthoic and 2-hydroxycinnamate gene gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18490 YPD4_RS18495 YPD4_3158 YPD4_RS18495 4012216 4014171 + p-hydroxybenzoic acid efflux pump subunit AaeB with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18495 YPD4_RS18500 YPD4_3159 gabD gabD 4014438 4015571 + succinate-semialdehyde dehydrogenase catalyzes the formation of succinate from succinate semialdehyde%3B NADP dependent gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18500 YPD4_RS18505 YPD4_3160 YPD4_RS18505 4015568 4015906 + aldehyde dehydrogenase gene gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18505 YPD4_RS18510 YPD4_3161 YPD4_RS18510 4016101 4016574 + ribonuclease Ba gene gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18510 YPD4_RS18515 YPD4_RS18515 YPD4_RS18515 4016579 4016860 + ribonuclease inhibitor gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18515 YPD4_RS18520 YPD4_3162 YPD4_RS18520 4016972 4017520 - hypothetical protein gene gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18520 YPD4_RS18525 YPD4_3163 pmbA pmbA 4017701 4019041 + peptidase PMbA protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18525 YPD4_RS18530 YPD4_3164 YPD4_RS18530 4019290 4019934 + hypothetical protein gene gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18530 YPD4_RS18535 YPD4_3165 YPD4_RS18535 4020142 4020528 + soluble cytochrome b562 2 gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18535 YPD4_RS18540 YPD4_3166 YPD4_RS18540 4020760 4021170 - nucleoside diphosphate kinase regulator Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis%2C CTP for lipid synthesis%2C and GTP for protein elongation gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18540 YPD4_RS18545 YPD4_3167 YPD4_RS18545 4021523 4023190 - trehalose-6-phosphate hydrolase gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18545 YPD4_RS18550 YPD4_3168 YPD4_RS18550 4023285 4024700 - PTS maltose transporter subunit IIBC phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18550 YPD4_RS18555 YPD4_3169 treR treR 4025111 4026064 - trehalose repressor regulates genes involved in trehalose metabolism%3B binds the intermediate trehalose-6-phosphate%3B binds a dimer%3B regulates treBC operon gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18555 YPD4_RS18560 YPD4_3170 YPD4_RS18560 4026298 4026774 - hypothetical protein gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18560 YPD4_RS18565 YPD4_3171 YPD4_RS18565 4027073 4027459 - reactive intermediate/imine deaminase has endoribonuclease activity on mRNA gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18565 YPD4_RS18570 YPD4_3172 YPD4_RS18570 4027597 4028061 - aspartate carbamoyltransferase regulatory chain involved in the allosteric regulation of aspartate carbamoyltransferase gene gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18570 YPD4_RS18575 YPD4_3173 YPD4_RS18575 4028073 4029008 - aspartate carbamoyltransferase gene gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18575 YPD4_RS18580 YPD4_RS18580 YPD4_RS18580 4029346 4029618 - phosphohistidinoprotein-hexose phosphotransferase gene gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18580 YPD4_RS18585 YPD4_3174 YPD4_RS18585 4029615 4030469 - glmZ(sRNA)-inactivating NTPase glucosamine-6-phosphate regulated%3B inactivates the glmS upregulator glmZ gene gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18585 YPD4_RS18590 YPD4_3175 YPD4_RS18590 4030775 4031257 - PTS sugar transporter subunit IIA involved in nitrogen metabolism%3B protein IIA is phosphorylated by enzyme I(Ntr) gene gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18590 YPD4_RS18595 YPD4_RS18595 YPD4_RS18595 4031375 4031662 - hypothetical protein YhbH%3B resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase%3B binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization)%3B seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing gene gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18595 YPD4_RS18600 YPD4_3176 YPD4_RS18600 4031686 4033119 - RNA polymerase sigma-54 factor sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism%3B the rhizobia often have 2 copies of this sigma factor%3B in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation%3B in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions%2C rpoN1 gene was regulated in response to oxygen gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18600 YPD4_RS18605 YPD4_3177 YPD4_RS18605 4033181 4033906 - LPS export ABC transporter ATP-binding protein gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18605 YPD4_RS18610 YPD4_3178 YPD4_RS18610 4033913 4034458 - sugar ABC transporter substrate-binding protein LptA%3B periplasmic binding protein part of a putative ABC superfamily of uptake transporters%3B interacts with LptB protein%2C the ATP binding component of the uptake system gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18610 YPD4_RS18615 YPD4_3179 YPD4_RS18615 4034442 4035005 - LPS export ABC transporter periplasmic protein LptC gene gene3711 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18615 YPD4_RS18620 YPD4_3180 YPD4_RS18620 4035002 4035565 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC forms homotetramers%3B catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate%3B functions in lipopolysaccharide biosynthesis gene gene3712 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18620 YPD4_RS18625 YPD4_3181 YPD4_RS18625 4035814 4036800 - arabinose 5-phosphate isomerase KdsD gene gene3713 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18625 YPD4_RS18630 YPD4_3182 YPD4_RS18630 4036911 4037885 - sodium:calcium antiporter gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18630 YPD4_RS18635 YPD4_3183 YPD4_RS18635 4038150 4038968 + organic solvent ABC transporter ATP-binding protein ABC transporter maintaining outer membrane lipid asymmetry gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18635 YPD4_RS18640 YPD4_3184 YPD4_RS18640 4039186 4039968 + ABC transporter permease gene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18640 YPD4_RS18645 YPD4_3185 YPD4_RS18645 4039973 4040530 + outer membrane lipid asymmetry maintenance protein MlaD gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18645 YPD4_RS18650 YPD4_3186 YPD4_RS18650 4040543 4041166 + organic solvent ABC transporter substrate-binding protein involved in maintaining outer membrane lipid asymmetry gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18650 YPD4_RS18655 YPD4_3187 YPD4_RS18655 4041202 4041504 + anti-sigma B factor antagonist gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18655 YPD4_RS18660 YPD4_RS18660 YPD4_RS18660 4041651 4041905 + hypothetical protein gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18660 YPD4_RS18665 YPD4_3188 YPD4_RS18665 4042059 4043321 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18665 YPD4_RS18670 YPD4_3189 YPD4_RS18670 4043502 4044590 - serine endoprotease gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18670 YPD4_RS18675 YPD4_3190 YPD4_RS18675 4044816 4045274 + transposase gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18675 YPD4_RS18680 YPD4_3191 YPD4_RS18680 4045391 4046764 - protease gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18680 YPD4_RS18685 YPD4_3192 YPD4_RS18685 4047035 4047439 - hypothetical protein gene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18685 YPD4_RS18690 YPD4_3193 YPD4_RS18690 4047663 4048790 + hypothetical protein gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18690 YPD4_RS18695 YPD4_3194 YPD4_RS18695 4049104 4049532 + 50S ribosomal protein L13 gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18695 YPD4_RS18700 YPD4_3195 YPD4_RS18700 4049547 4049939 + 30S ribosomal protein S9 gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18700 YPD4_RS18705 YPD4_RS18705 YPD4_RS18705 4049936 4050133 - hypothetical protein gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18705 YPD4_RS18710 YPD4_3196 sspA sspA 4050313 4050954 + stringent starvation protein A transcriptional activator%3B required for activation of bacteriophage P1 late promoter%3B induced by starvation gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18710 YPD4_RS18715 YPD4_3197 YPD4_RS18715 4050960 4051475 + peptidase gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18715 YPD4_RS18720 YPD4_3198 YPD4_RS18720 4051628 4052113 - hypothetical protein gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18720 YPD4_RS18725 YPD4_3199 YPD4_RS18725 4052554 4053972 - glutamate synthase subunit beta gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18725 YPD4_RS18730 YPD4_3200 gltB gltB 4053982 4058439 - glutamate synthase subunit alpha catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18730 YPD4_RS18735 YPD4_3201 YPD4_RS18735 4059262 4060185 + radical SAM protein gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18735 YPD4_RS18740 YPD4_RS18740 YPD4_RS18740 4060166 4060381 + hypothetical protein gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18740 YPD4_RS18745 YPD4_3202 YPD4_RS18745 4060449 4062785 + PAS domain-containing two-component system sensor histidine kinase/response regulator sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon%3B hybrid sensory histidine kinase in two-component regulatory system with ArcA gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18745 YPD4_RS18750 YPD4_RS18750 YPD4_RS18750 4062803 4062997 + hypothetical protein gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18750 YPD4_RS18755 YPD4_3203 YPD4_RS18755 4063027 4063680 + isoprenoid biosynthesis protein gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18755 YPD4_RS18760 YPD4_3204 mtgA mtgA 4063677 4064402 + monofunctional biosynthetic peptidoglycan transglycosylase glycosyltransferase%3B polymerizes glycan strands in the peptidoglycan gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18760 YPD4_RS18765 YPD4_3205 YPD4_RS18765 4064609 4065184 - hypothetical protein gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18765 YPD4_RS18770 YPD4_3206 YPD4_RS18770 4065195 4065785 - DnaA initiator-associating protein DiaA Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18770 YPD4_RS18775 YPD4_3207 YPD4_RS18775 4066056 4066409 - hypothetical protein gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18775 YPD4_RS18780 YPD4_3208 YPD4_RS18780 4066493 4068466 - penicillin-binding protein activator LpoA gene gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18780 YPD4_RS18785 YPD4_3209 YPD4_RS18785 4068529 4069428 + 16S rRNA (cytidine(1402)-2'-O)-methyltransferase gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18785 YPD4_RS18790 YPD4_3210 YPD4_RS18790 4070365 4071069 - hypothetical protein gene gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18790 YPD4_RS18795 YPD4_3211 YPD4_RS18795 4071331 4072224 + LysR family transcriptional regulator gene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18795 YPD4_RS18800 YPD4_3212 YPD4_RS18800 4072355 4073292 - glutathionyl-hydroquinone reductase YqjG gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18800 YPD4_RS18805 YPD4_3213 YPD4_RS18805 4073305 4073721 - ATPase AAA gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18805 YPD4_RS18810 YPD4_3214 YPD4_RS18810 4073711 4074085 - ATPase gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18810 YPD4_RS18815 YPD4_3215 YPD4_RS18815 4074085 4075107 - transposase gene gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18815 YPD4_RS18820 YPD4_3216 YPD4_RS18820 4075164 4075865 + esterase YjfP%3B esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro%3B unknown function and substrate in vivo gene gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18820 YPD4_RS18825 YPD4_RS18825 YPD4_RS18825 4075940 4076218 + hypothetical protein gene gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18825 YPD4_RS18830 YPD4_3217 rpsF rpsF 4076232 4076624 + 30S ribosomal protein S6 binds cooperatively with S18 to the S15-16S complex%2C allowing platform assembly to continue with S11 and S21 gene gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18830 YPD4_RS18835 YPD4_RS18835 YPD4_RS18835 4076633 4076950 + primosomal replication protein n binds single-stranded DNA at the primosome assembly site gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18835 YPD4_RS18840 YPD4_RS18840 rpsR rpsR 4076955 4077182 + 30S ribosomal protein S18 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA%3B helps stabilize the platform of the 30S subunit gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18840 YPD4_RS18845 YPD4_3218 rplI rplI 4077222 4077674 + 50S ribosomal protein L9 in Escherichia coli this protein is wrapped around the base of the L1 stalk gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18845 YPD4_RS18850 YPD4_RS18850 YPD4_RS18850 4077710 4077880 + transposase gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18850 YPD4_RS18855 YPD4_3219 YPD4_RS18855 4077870 4078328 + transposase gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18855 YPD4_RS18860 YPD4_3220 YPD4_RS18860 4078450 4078905 - hypothetical protein gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18860 YPD4_RS18865 YPD4_RS18865 YPD4_RS18865 4079045 4079783 - lysine transporter LysM gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18865 YPD4_RS18870 YPD4_3222 YPD4_RS18870 4080126 4080746 + peptidyl-prolyl cis-trans isomerase FKBP-type%3B rotamase%3B catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides gene gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18870 YPD4_RS18875 YPD4_3223 YPD4_RS18875 4080844 4081509 - iron-sulfur cluster repair protein YtfE Involved in anaerobic NO protection and iron metabolism gene gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18875 YPD4_RS18880 YPD4_RS18880 cpdB cpdB 4081664 4083633 - 2'%2C 3'-cyclic nucleotide 2'-phosphodiesterase periplasmic enzyme%3B functions during ribonucleic acid degradation%3B 2'%2C3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate gene gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18880 YPD4_RS18885 YPD4_3226 YPD4_RS18885 4084068 4084808 + 3'-5'-bisphosphate nucleotidase catalyzes the formation of AMP from adenosine-3'%2C5'-bisphosphate gene gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18885 YPD4_RS18890 YPD4_3227 YPD4_RS18890 4084811 4085374 - hypothetical protein gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18890 YPD4_RS18895 YPD4_RS18895 YPD4_RS18895 4085710 4085922 + hypothetical protein gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18895 YPD4_RS18900 YPD4_3228 YPD4_RS18900 4086030 4087361 - membrane protein gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18900 YPD4_RS18905 YPD4_3229 YPD4_RS18905 4087620 4088258 - peptide methionine sulfoxide reductase MsrA this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form%3B provides protection against oxidative stress gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18905 YPD4_RS18910 YPD4_3230 YPD4_RS18910 4088533 4090269 + membrane protein gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18910 YPD4_RS18915 YPD4_3231 YPD4_RS18915 4090266 4094183 + hypothetical protein gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18915 YPD4_RS18920 YPD4_3232 YPD4_RS18920 4094186 4094542 + hypothetical protein gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18920 YPD4_RS18925 YPD4_3233 YPD4_RS18925 4094660 4095187 - inorganic pyrophosphatase catalyzes the hydrolysis of pyrophosphate to phosphate gene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18925 YPD4_RS18930 YPD4_3234 YPD4_RS18930 4095387 4096400 - fructose 1%2C6-bisphosphatase catalyzes the formation of D-fructose 6-phosphate from fructose-1%2C6-bisphosphate gene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18930 YPD4_RS18935 YPD4_3235 YPD4_RS18935 4096571 4097953 + UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase ligates L-alanyl-gamma-D-glutamyl-meso-diaminopimelate to UDP-N-acetylmuramic acid for reincorporation into peptidoglycan gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18935 YPD4_RS18940 YPD4_RS18940 YPD4_RS18940 4098040 4098246 + gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18940 YPD4_RS18945 YPD4_RS18945 YPD4_RS18945 4098249 4098512 - hypothetical protein gene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18945 YPD4_RS18950 YPD4_3236 YPD4_RS18950 4098901 4099371 - arginine repressor regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18950 YPD4_RS18955 YPD4_3237 YPD4_RS18955 4099835 4100773 + malate dehydrogenase oxidizes malate to oxaloacetate gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18955 YPD4_RS18960 YPD4_RS18960 YPD4_RS18960 4101207 4101482 - DNA-binding protein gene gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18960 YPD4_RS18965 YPD4_3238 YPD4_RS18965 4101666 4102013 + DNA-binding protein gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18965 YPD4_RS18970 YPD4_3239 YPD4_RS18970 4102110 4103081 - octaprenyl diphosphate synthase gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18970 YPD4_RS18975 YPD4_3240 rplU rplU 4103341 4103652 + 50S ribosomal protein L21 gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18975 YPD4_RS18980 YPD4_RS18980 rpmA rpmA 4103672 4103929 + 50S ribosomal protein L27 involved in the peptidyltransferase reaction during translation gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18980 YPD4_RS18985 YPD4_3241 YPD4_RS18985 4104017 4105003 + membrane protein gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18985 YPD4_RS18990 YPD4_3242 obgE obgE 4105004 4106176 + GTPase Obg ObgE%3B essential GTPase%3B exhibits high exchange rate for GTP/GDP%3B associates with 50S ribosomal subunit%3B involved in regulation of chromosomal replication gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18990 YPD4_RS18995 YPD4_3243 YPD4_RS18995 4106271 4107338 - two-component system sensor histidine kinase gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS18995 YPD4_RS19000 YPD4_3244 YPD4_RS19000 4107335 4107997 - two-component system response regulator gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19000 YPD4_RS19005 YPD4_3245 YPD4_RS19005 4108003 4109451 - D-alanyl-D-alanine carboxypeptidase penicillin binding protein 4%3B penicillin sensitive%3B catalyzes the formation of D-alanine from D-alanyl-D-alanine%3B one of four%2C DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19005 YPD4_RS19010 YPD4_3246 greA greA 4109709 4110185 + transcription elongation factor GreA necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19010 YPD4_RS19015 YPD4_RS19015 YPD4_RS19015 4110315 4110605 - RNA-binding protein RNA binding protein found associated to pre-50S subunit of the ribosome%3B putative role in ribosome assembly%3B necessary for optimal growth but not cell viability gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19015 YPD4_RS19020 YPD4_3248 rrmJ rrmJ 4110752 4111381 + ribosomal RNA large subunit methyltransferase E Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19020 YPD4_RS19025 YPD4_3249 hflB hflB 4111550 4113374 + ATP-dependent metalloprotease inner membrane metalloprotease%3B may be involved in degradation of aberrant cytoplasmic and membrane proteins gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19025 YPD4_RS19030 YPD4_3250 folP folP 4113494 4114327 + dihydropteroate synthase catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7%2C8-dihydropteridine diphosphate and 4-aminobenzoate gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19030 YPD4_RS19035 YPD4_3251 glmM glmM 4114337 4115677 + phosphoglucosamine mutase catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19035 YPD4_RS19040 YPD4_RS19040 secG secG 4115900 4116235 + preprotein translocase subunit SecG gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19040 YPD4_RS19045 YPD4_t51 YPD4_RS19045 4116328 4116414 + tRNA-Leu tRNA gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19045 YPD4_RS19050 YPD4_t52 YPD4_RS19050 4116475 4116551 + tRNA-Met tRNA gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19050 YPD4_RS19055 YPD4_3252 YPD4_RS19055 4116767 4117219 + ribosome maturation factor RimP required for the maturation of the 30S ribosomal subunits gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19055 YPD4_RS19060 YPD4_3253 nusA nusA 4117241 4118728 + transcription termination factor NusA modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination gene gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19060 YPD4_RS19065 YPD4_3254 infB infB 4118753 4121431 + translation initiation factor IF-2 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex gene gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19065 YPD4_RS19070 YPD4_3255 rbfA rbfA 4121497 4121907 + ribosome-binding factor A associates with free 30S ribosomal subunits%3B essential for efficient processing of 16S rRNA%3B in Escherichia coli rbfA is induced by cold shock gene gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19070 YPD4_RS19075 YPD4_3256 truB truB 4121907 4122881 + tRNA pseudouridine synthase B catalyzes isomerization of specific uridines in RNA to pseudouridine%3B responsible for residues in T loops of many tRNAs gene gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19075 YPD4_RS19080 YPD4_RS19080 YPD4_RS19080 4123003 4123272 + 30S ribosomal protein S15 gene gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19080 YPD4_RS19085 YPD4_3257 YPD4_RS19085 4123359 4123874 + transposase gene gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19085 YPD4_RS19090 YPD4_RS19090 YPD4_RS19090 4123928 4124526 + transposase gene gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19090 YPD4_RS19095 YPD4_RS19095 YPD4_RS19095 4124717 4125829 - type VI secretion protein gene gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19095 YPD4_RS19100 YPD4_3259 YPD4_RS19100 4125829 4126269 - lysozyme gene gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19100 YPD4_RS19105 YPD4_3260 YPD4_RS19105 4126276 4127757 - type VI secretion protein gene gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19105 YPD4_RS19110 YPD4_3261 YPD4_RS19110 4127825 4128322 - type VI secretion protein gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19110 YPD4_RS19115 YPD4_3262 YPD4_RS19115 4128846 4129364 + hypothetical protein gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19115 YPD4_RS19120 YPD4_RS19120 YPD4_RS19120 4129516 4129794 - hypothetical protein gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19120 YPD4_RS19125 YPD4_3263 YPD4_RS19125 4130265 4131176 - maltose operon protein gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19125 YPD4_RS19130 YPD4_3264 lamB lamB 4131417 4132689 - maltoporin porin involved in the transport of maltose and maltodextrins gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19130 YPD4_RS19135 YPD4_3265 YPD4_RS19135 4132760 4133869 - maltose/maltodextrin import ATP-binding protein MalK with malEFG is involved in import of maltose/maltodextrin gene gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19135 YPD4_RS19140 YPD4_RS19140 YPD4_RS19140 4133873 4134109 - hypothetical protein gene gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19140 YPD4_RS19145 YPD4_3266 malE malE 4134671 4135882 + maltose ABC transporter substrate-binding protein functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis gene gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19145 YPD4_RS19150 YPD4_3267 malF malF 4136069 4137646 + maltose transporter membrane protein with MalKGE is involved in maltose transport into the cell gene gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19150 YPD4_RS19155 YPD4_3268 malG malG 4137660 4138550 + maltose ABC transporter permease with MalKFE is involved in the transport of maltose into the cell gene gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19155 YPD4_RS19160 YPD4_3269 YPD4_RS19160 4138693 4139100 - protein PsiE gene gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19160 YPD4_RS19165 YPD4_3270 pgi pgi 4139235 4140881 - glucose-6-phosphate isomerase functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis%3B catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate%3B member of PGI family gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19165 YPD4_RS19170 YPD4_3271 YPD4_RS19170 4141251 4142636 + aspartate kinase catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP%3B functions in amino acid biosynthesis%3B lysine sensitive gene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19170 YPD4_RS19175 YPD4_3273 YPD4_RS19175 4143394 4144893 + hemolysin activation protein gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19175 YPD4_RS19180 YPD4_3274 YPD4_RS19180 4144963 4149870 + hemolysin gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19180 YPD4_RS19185 YPD4_3275 metH metH 4149966 4153661 - B12-dependent methionine synthase one of two methionine synthases in Escherichia coli%3B MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine%3B requires zinc for activity gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19185 YPD4_RS19190 YPD4_3276 YPD4_RS19190 4153876 4154223 + IclR family transcriptional regulator gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19190 YPD4_RS19195 YPD4_3277 YPD4_RS19195 4154208 4154720 + IclR family transcriptional regulator gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19195 YPD4_RS19200 YPD4_3278 aceK aceK 4154840 4156567 - isocitrate dehydrogenase catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity%3B unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19200 YPD4_RS19205 YPD4_3279 YPD4_RS19205 4156823 4158130 - isocitrate lyase gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19205 YPD4_RS19210 YPD4_3280 YPD4_RS19210 4158177 4159775 - malate synthase Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19210 YPD4_RS19215 YPD4_3281 YPD4_RS19215 4160196 4161125 - homoserine O-succinyltransferase catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis gene gene3832 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19215 YPD4_RS19220 YPD4_RS19220 YPD4_RS19220 4161193 4161465 + hypothetical protein gene gene3833 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19220 YPD4_RS19225 YPD4_r11 YPD4_RS19225 4161865 4161980 - 5S ribosomal RNA rRNA gene3834 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19225 YPD4_RS19230 YPD4_t53 YPD4_RS19230 4162021 4162096 - tRNA-Thr tRNA gene3835 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19230 YPD4_RS19235 YPD4_RS19235 YPD4_RS19235 4162112 4162227 - 5S ribosomal RNA rRNA gene3836 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19235 YPD4_RS19240 YPD4_r13 YPD4_RS19240 4162319 4165252 - 23S ribosomal RNA rRNA gene3837 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19240 YPD4_RS19245 YPD4_t54 YPD4_RS19245 4165462 4165537 - tRNA-Ala tRNA gene3838 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19245 YPD4_RS19250 YPD4_t55 YPD4_RS19250 4165589 4165665 - tRNA-Ile tRNA gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19250 YPD4_RS19255 YPD4_r14 YPD4_RS19255 4165765 4167313 - 16S ribosomal RNA rRNA gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19255 YPD4_RS19265 YPD4_RS19265 purH purH 4167969 4169560 + phosphoribosylaminoimidazolecarboxamide formyltransferase involved in de novo purine biosynthesis gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19265 YPD4_RS19270 YPD4_3283 YPD4_RS19270 4169620 4170906 + phosphoribosylamine--glycine ligase catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19270 YPD4_RS19275 YPD4_3284 YPD4_RS19275 4171054 4171707 - hypothetical protein gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19275 YPD4_RS19280 YPD4_RS19280 YPD4_RS19280 4171757 4172032 - transcriptional regulator gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19280 YPD4_RS19285 YPD4_3285 YPD4_RS19285 4172221 4172811 - hypothetical protein gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19285 YPD4_RS19290 YPD4_3286 YPD4_RS19290 4172857 4173561 - endonuclease V Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA%3B cleaves DNA containing urea residues%2C AP sites%2C base mismatches%2C insertion/deletion mismatches%2C flaps%2C and pseudo-Y structures gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19290 YPD4_RS19295 YPD4_3287 hemE hemE 4173627 4174694 - uroporphyrinogen decarboxylase catalyzes the formation of coproporphyrinogen from uroporphyrinogen III gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19295 YPD4_RS19300 YPD4_3288 YPD4_RS19300 4174813 4175556 - hypothetical protein gene gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19300 YPD4_RS19305 YPD4_3289 nudC nudC 4175691 4176473 - NADH pyrophosphatase can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH%3B requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates gene gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19305 YPD4_RS19310 YPD4_3290 YPD4_RS19310 4176570 4177079 + regulator of sigma D gene gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19310 YPD4_RS19315 YPD4_RS19315 YPD4_RS19315 4177202 4177462 + hypothetical protein gene gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19315 YPD4_RS19320 YPD4_3291 YPD4_RS19320 4177455 4179500 + phosphomethylpyrimidine synthase catalyzes the formation of 4-amino-2-methyl-5-phosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole and S-adenosyl-L-methionine in thiamine biosynthesis gene gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19320 YPD4_RS19325 YPD4_3292 YPD4_RS19325 4179487 4180161 + thiamine-phosphate pyrophosphorylase catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate gene gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19325 YPD4_RS19330 YPD4_3293 YPD4_RS19330 4180151 4180948 + molybdopterin biosynthesis protein MoeB gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19330 YPD4_RS19335 YPD4_RS19335 YPD4_RS19335 4180945 4181160 + thiamine biosynthesis protein ThiS gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19335 YPD4_RS19340 YPD4_3294 YPD4_RS19340 4181162 4181977 + thiazole synthase gene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19340 YPD4_RS19345 YPD4_3295 thiH thiH 4181970 4183100 + thiamine biosynthesis protein ThiH in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS%3B with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine%2C cysteine and 1-deoxy-D-xylulose-5-phosphate%3B forms a complex with ThiG%3B contains an iron-sulfur center gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19345 YPD4_RS19350 YPD4_RS19350 YPD4_RS19350 4183143 4183256 - hypothetical protein gene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19350 YPD4_RS19355 YPD4_RS19355 YPD4_RS19355 4183375 4183542 + invasin gene gene3860 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19355 YPD4_RS19360 YPD4_3296 YPD4_RS19360 4183532 4183990 + transposase gene gene3861 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19360 YPD4_RS19365 YPD4_3297 YPD4_RS19365 4184117 4188337 - DNA-directed RNA polymerase subunit beta' DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter gene gene3862 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19365 YPD4_RS19370 YPD4_3298 rpoB rpoB 4188466 4192494 - DNA-directed RNA polymerase subunit beta DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates%3B beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19370 YPD4_RS19375 YPD4_3299 rplL rplL 4192837 4193205 - 50S ribosomal protein L7/L12 present in two forms%3B L12 is normal%2C while L7 is aminoacylated at the N-terminal serine%3B the only multicopy ribosomal protein%3B 4:1 ratio of L7/L12 per ribosome%3B two L12 dimers bind L10%3B critically important for translation efficiency and fidelity%3B stimulates GTPase activity of translation factors gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19375 YPD4_RS19380 YPD4_3300 rplJ rplJ 4193272 4193769 - 50S ribosomal protein L10 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit gene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19380 YPD4_RS19385 YPD4_3301 YPD4_RS19385 4194134 4194839 - 50S ribosomal protein L1 gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19385 YPD4_RS19390 YPD4_3302 YPD4_RS19390 4194843 4195271 - 50S ribosomal protein L11 gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19390 YPD4_RS19395 YPD4_3303 nusG nusG 4195462 4196007 - transcription termination/antitermination protein NusG Modulates Rho-dependent transcription termination gene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19395 YPD4_RS19400 YPD4_RS19400 secE secE 4196009 4196393 - preprotein translocase subunit SecE forms a complex with SecY and SecG%3B SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane%2C a process driven by ATP and a proton-motive force gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19400 YPD4_RS19405 YPD4_3304 tuf tuf 4196644 4197828 - elongation factor Tu EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19405 YPD4_RS19410 YPD4_t56 YPD4_RS19410 4197937 4198012 - tRNA-Thr tRNA gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19410 YPD4_RS19415 YPD4_t57 YPD4_RS19415 4198019 4198093 - tRNA-Gly tRNA gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19415 YPD4_RS19420 YPD4_t58 YPD4_RS19420 4198243 4198327 - tRNA-Tyr tRNA gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19420 YPD4_RS19425 YPD4_t59 YPD4_RS19425 4198346 4198421 - tRNA-Thr tRNA gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19425 YPD4_RS19430 YPD4_3305 YPD4_RS19430 4198885 4199667 - transposase gene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19430 YPD4_RS19435 YPD4_3306 YPD4_RS19435 4199664 4200686 - transposase gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19435 YPD4_RS19440 YPD4_3307 YPD4_RS19440 4200776 4201327 + acetyltransferase gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19440 YPD4_RS19445 YPD4_3308 YPD4_RS19445 4201538 4202488 + pantothenate kinase gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19445 YPD4_RS19450 YPD4_3309 YPD4_RS19450 4202523 4203482 - bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor catalyzes the formation of biotinyl-5'-AMP%2C also acts as a transcriptional repressor of the biotin operon gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19450 YPD4_RS19455 YPD4_3310 murB murB 4203479 4204516 - UDP-N-acetylenolpyruvoylglucosamine reductase catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis gene gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19455 YPD4_RS19460 YPD4_RS19460 YPD4_RS19460 4204980 4205095 - 5S ribosomal RNA rRNA gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19460 YPD4_RS19465 YPD4_r16 YPD4_RS19465 4205187 4208120 - 23S ribosomal RNA rRNA gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19465 YPD4_RS19470 YPD4_t60 YPD4_RS19470 4208364 4208439 - tRNA-Glu tRNA gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19470 YPD4_RS19475 YPD4_r17 YPD4_RS19475 4208573 4210121 - 16S ribosomal RNA rRNA gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19475 YPD4_RS19485 YPD4_RS19485 YPD4_RS19485 4210593 4211126 - protoporphyrinogen oxidase gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19485 YPD4_RS19490 YPD4_3311 YPD4_RS19490 4211148 4212599 - potassium transporter gene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19490 YPD4_RS19495 YPD4_3312 YPD4_RS19495 4212639 4213115 - hypothetical protein gene gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19495 YPD4_RS19500 YPD4_3313 YPD4_RS19500 4213188 4213646 - transposase gene gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19500 YPD4_RS19505 YPD4_RS19505 YPD4_RS19505 4213751 4213960 - hypothetical protein gene gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19505 YPD4_RS19510 YPD4_3314 YPD4_RS19510 4213960 4215291 - Xaa-Pro dipeptidase catalyzes the hydrolysis of dipeptides with a proline at the C-terminal%3B also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters gene gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19510 YPD4_RS19515 YPD4_3315 fadB fadB 4215618 4217807 + fatty acid oxidation complex subunit alpha includes enoyl-CoA hydratase%2C delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase%2C 3-hydroxyacyl-CoA dehydrogenase%2C and 3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities%3B forms a heterotetramer with FadA%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19515 YPD4_RS19520 YPD4_3316 fadA fadA 4217819 4218982 + 3-ketoacyl-CoA thiolase FadA%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadB%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19520 YPD4_RS19525 YPD4_3317 fre fre 4219142 4219843 - FMN reductase NAD(P)H-flavin reductase%3B catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide%3B in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19525 YPD4_RS19530 YPD4_3318 YPD4_RS19530 4219898 4221394 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19530 YPD4_RS19535 YPD4_3319 rfaH rfaH 4221642 4222130 + transcriptional regulator gene gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19535 YPD4_RS19540 YPD4_3320 YPD4_RS19540 4222240 4223262 - delta-aminolevulinic acid dehydratase catalyzes the formation of porphobilinogen from 5-aminolevulinate gene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19540 YPD4_RS19545 YPD4_3321 YPD4_RS19545 4223277 4223612 - deoxyribonuclease gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19545 YPD4_RS19550 YPD4_3322 YPD4_RS19550 4223651 4224430 - transposase gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19550 YPD4_RS19555 YPD4_3323 YPD4_RS19555 4224430 4225452 - transposase gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19555 YPD4_RS19560 YPD4_3324 YPD4_RS19560 4225479 4226018 - deoxyribonuclease gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19560 YPD4_RS19565 YPD4_3325 YPD4_RS19565 4226074 4226850 - preprotein translocase subunit TatC with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane gene gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19565 YPD4_RS19570 YPD4_3326 YPD4_RS19570 4226853 4227515 - Sec-independent protein translocase TatB gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19570 YPD4_RS19575 YPD4_RS19575 YPD4_RS19575 4227519 4227785 - protein translocase TatA gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19575 YPD4_RS19580 YPD4_3327 ubiB ubiB 4227966 4229597 - hypothetical protein an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone%3B functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis%3B similar to eukaryotic proteins that exhibit kinase functions gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19580 YPD4_RS19585 YPD4_3328 YPD4_RS19585 4229597 4230247 - sterol-binding protein gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19585 YPD4_RS19590 YPD4_3329 ubiE ubiE 4230261 4231016 - ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone and menaquinone gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19590 YPD4_RS19595 YPD4_3330 YPD4_RS19595 4231108 4232613 - DNA recombination protein RmuC YigN%3B nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence%3B transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner gene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19595 YPD4_RS19600 YPD4_3331 YPD4_RS19600 4232821 4233351 - cytochrome O ubiquinol oxidase gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19600 YPD4_RS19605 YPD4_3332 YPD4_RS19605 4233623 4235434 - carbon starvation protein CstA gene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19605 YPD4_RS19610 YPD4_3333 YPD4_RS19610 4235798 4236628 - C4-dicarboxylate ABC transporter gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19610 YPD4_RS19615 YPD4_3334 YPD4_RS19615 4236749 4237510 - uridine phosphorylase catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate%3B involved in the pyrimidine salvage pathway gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19615 YPD4_RS19620 YPD4_3335 YPD4_RS19620 4237938 4238810 + carboxymethylenebutenolidase gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19620 YPD4_RS19625 YPD4_3336 YPD4_RS19625 4238865 4241156 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19625 YPD4_RS19630 YPD4_3337 YPD4_RS19630 4241247 4242200 + LysR family transcriptional regulator homocysteine-binding%3B positive regulator of metA%2C metE and metH gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19630 YPD4_RS19635 YPD4_RS19635 YPD4_RS19635 4242088 4242987 - membrane protein gene gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19635 YPD4_RS19640 YPD4_3338 YPD4_RS19640 4243369 4244295 - membrane protein gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19640 YPD4_RS19645 YPD4_3339 ugpQ ugpQ 4244396 4245145 - glycerophosphodiester phosphodiesterase hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol%3B induced when cells are starved for inorganic phosphate gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19645 YPD4_RS19650 YPD4_3340 ugpC ugpC 4245142 4246215 - sn-glycerol-3-phosphate import ATP-binding protein UgpC part of the UgpABCE glycerol-3-phosphate uptake system gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19650 YPD4_RS19655 YPD4_3341 YPD4_RS19655 4246222 4247067 - sn-glycerol 3-phosphate ABC transporter permease with UgpABC is involved in uptake of glycerol-3-phosphate gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19655 YPD4_RS19660 YPD4_3342 YPD4_RS19660 4247064 4247951 - sn-glycerol 3-phosphate ABC transporter permease with UgpEC is involved in the uptake of glycerol-3-phosphate gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19660 YPD4_RS19665 YPD4_3343 YPD4_RS19665 4248249 4249568 - sn-glycerol-3-phosphate-binding periplasmic protein UgpB with UgpACE is involved in the uptake of glycerol-3-phosphate gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19665 YPD4_RS19670 YPD4_3344 YPD4_RS19670 4250123 4250614 + hypothetical protein gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19670 YPD4_RS19675 YPD4_3345 YPD4_RS19675 4250881 4253214 + hypothetical protein gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19675 YPD4_RS19680 YPD4_3346 YPD4_RS19680 4253232 4253918 + pilus assembly protein gene gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19680 YPD4_RS19685 YPD4_3347 YPD4_RS19685 4253890 4254537 + hypothetical protein gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19685 YPD4_RS19690 YPD4_3348 YPD4_RS19690 4254599 4255117 + hypothetical protein gene gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19690 YPD4_RS19695 YPD4_3349 YPD4_RS19695 4255223 4256329 + hypothetical protein gene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19695 YPD4_RS19700 YPD4_3350 YPD4_RS19700 4256444 4256905 - hypothetical protein gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19700 YPD4_RS19705 YPD4_3351 livF livF 4257133 4257834 - amino acid ABC transporter ATP-binding protein with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19705 YPD4_RS19710 YPD4_3352 livG livG 4257879 4258646 - amino acid ABC transporter ATP-binding protein Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19710 YPD4_RS19715 YPD4_3353 livM livM 4258643 4259929 - leucine/isoleucine/valine transporter permease subunit Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19715 YPD4_RS19720 YPD4_3354 YPD4_RS19720 4259926 4260852 - branched-chain amino acid transporter permease subunit LivH LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19720 YPD4_RS19725 YPD4_3355 YPD4_RS19725 4261033 4262148 - amino acid ABC transporter substrate-binding protein with LivFGHM is involved in the high affinity leucine transport gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19725 YPD4_RS19730 YPD4_3356 YPD4_RS19730 4262570 4262962 + acetyltransferase gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19730 YPD4_RS19735 YPD4_3357 YPD4_RS19735 4263208 4263666 - transposase gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19735 YPD4_RS19740 YPD4_RS19740 YPD4_RS19740 4263656 4263826 - transposase gene gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19740 YPD4_RS19745 YPD4_3358 YPD4_RS19745 4263880 4264737 - RNA polymerase factor sigma-32 binds with the catalytic core of RNA polymerase to produce the holoenzyme%3B this sigma factor is responsible for the expression of heat shock promoters gene gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19745 YPD4_RS19750 YPD4_3359 ftsX ftsX 4265048 4266001 - cell division protein FtsX ABC transporter%2C membrane protein gene gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19750 YPD4_RS19755 YPD4_3360 YPD4_RS19755 4265991 4266659 - cell division protein FtsE ATP-binding protein of an ATP-binding cassette transporter%3B when bound to FtsX%2C FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions gene gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19755 YPD4_RS19760 YPD4_3361 YPD4_RS19760 4266665 4268299 - signal recognition particle-docking protein FtsY gene gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19760 YPD4_RS19765 YPD4_RS19765 YPD4_RS19765 4268328 4268471 + hypothetical protein gene gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19765 YPD4_RS19770 YPD4_RS19770 rsmD rsmD 4268581 4269243 + 16S rRNA methyltransferase catalyzes the methylation of 16S rRNA at position G966 gene gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19770 YPD4_RS19775 YPD4_RS19775 YPD4_RS19775 4269233 4269505 + membrane protein gene gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19775 YPD4_RS19780 YPD4_3363 YPD4_RS19780 4269692 4270111 - membrane protein gene gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19780 YPD4_RS19785 YPD4_3364 YPD4_RS19785 4270323 4270643 - hypothetical protein gene gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19785 YPD4_RS19790 YPD4_3365 YPD4_RS19790 4270933 4271559 + membrane protein gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19790 YPD4_RS19795 YPD4_3366 zntA zntA 4271973 4274339 + cadmium-transporting ATPase P-type ATPase involved in the export of lead%2C cadmium%2C zinc and mercury gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19795 YPD4_RS19800 YPD4_RS19800 YPD4_RS19800 4274439 4274693 - sulfurtransferase TusA TusA%3B transfers sulfur to TusBCD complex%3B involved in thiouridation of U34 position of some tRNAs gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19800 YPD4_RS19805 YPD4_3368 YPD4_RS19805 4274977 4275645 + membrane protein gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19805 YPD4_RS19810 YPD4_3369 YPD4_RS19810 4275775 4276302 + lipoprotein gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19810 YPD4_RS19815 YPD4_3370 glpC glpC 4276464 4277759 - sn-glycerol-3-phosphate dehydrogenase subunit C anaerobic%3B with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate gene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19815 YPD4_RS19820 YPD4_3371 YPD4_RS19820 4277756 4279030 - anaerobic glycerol-3-phosphate dehydrogenase subunit B sn-glycerol-3-phosphate dehydrogenase (anaerobic)%3B catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate%3B part of GlpABC complex%3B presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19820 YPD4_RS19825 YPD4_3372 YPD4_RS19825 4279020 4280675 - sn-glycerol-3-phosphate dehydrogenase subunit A gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19825 YPD4_RS19830 YPD4_RS19830 YPD4_RS19830 4280849 4280947 - sn-glycerol-3-phosphate dehydrogenase subunit A gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19830 YPD4_RS19835 YPD4_3373 glpQ glpQ 4281300 4282415 + glycerophosphodiester phosphodiesterase hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols%3B periplasmic gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19835 YPD4_RS19840 YPD4_3374 YPD4_RS19840 4282489 4283688 - viral enhancin family protein gene gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19840 YPD4_RS19845 YPD4_3375 YPD4_RS19845 4283965 4284774 - hydrolase gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19845 YPD4_RS19850 YPD4_3376 YPD4_RS19850 4284809 4285822 - lysophospholipase L2 lecithinase B%3B catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine%3B can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19850 YPD4_RS19855 YPD4_RS19855 rhtB rhtB 4286018 4286637 + homoserine transporter gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19855 YPD4_RS19860 YPD4_3378 YPD4_RS19860 4286688 4287308 - threonine transporter RhtB gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19860 YPD4_RS19865 YPD4_3379 YPD4_RS19865 4287415 4289247 - ATP-dependent DNA helicase RecQ functions in blocking illegitimate recombination%2C enhancing topoisomerase activity%2C initiating SOS signaling and clearing blocked replication forks%3B component of the RecF recombinational pathway gene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19865 YPD4_RS19870 YPD4_3380 YPD4_RS19870 4289325 4290203 - phospholipase A catalyzes the hydrolysis of phosphatidylcholine gene gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19870 YPD4_RS19875 YPD4_3381 YPD4_RS19875 4290425 4290895 + hypothetical protein gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19875 YPD4_RS19880 YPD4_3382 YPD4_RS19880 4290982 4291873 + chloramphenical resistance permease RarD gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19880 YPD4_RS19885 YPD4_3383 YPD4_RS19885 4291971 4292921 - magnesium transporter CorA responsible for the influx of magnesium ions gene gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19885 YPD4_RS19890 YPD4_3384 YPD4_RS19890 4293570 4294400 - hypothetical protein gene gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19890 YPD4_RS19895 YPD4_RS19895 YPD4_RS19895 4294426 4295644 - hypothetical protein gene gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19895 YPD4_RS19900 YPD4_3387 YPD4_RS19900 4296072 4296758 + TetR family transcriptional regulator gene gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19900 YPD4_RS19905 YPD4_3388 uvrD uvrD 4296872 4299034 - DNA-dependent helicase unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present%3B involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair. gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19905 YPD4_RS19910 YPD4_3389 YPD4_RS19910 4299136 4299852 - flavin mononucleotide phosphatase YigB%3B member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein%3B unknown function gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19910 YPD4_RS19915 YPD4_3390 xerC xerC 4299852 4300763 - tyrosine recombinase XerC site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19915 YPD4_RS19920 YPD4_3391 YPD4_RS19920 4300760 4301464 - hypothetical protein gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19920 YPD4_RS19925 YPD4_3392 dapF dapF 4301529 4302353 - diaminopimelate epimerase involved in lysine biosynthesis%3B DAP epimerase%3B produces DL-diaminopimelate from LL-diaminopimelate gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19925 YPD4_RS19930 YPD4_RS19930 YPD4_RS19930 4302537 4302725 - lipoprotein gene gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19930 YPD4_RS19935 YPD4_3393 cyaY cyaY 4302877 4303197 + protein CyaY iron-dependent inhibitor of iron-sulfur cluster formation%3B iron-binding and oxidizing protein%3B defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease%3B based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly gene gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19935 YPD4_RS19940 YPD4_3394 cyaA cyaA 4303441 4305993 - adenylate cyclase catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP gene gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19940 YPD4_RS19945 YPD4_RS19945 YPD4_RS19945 4306066 4306266 + hypothetical protein gene gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19945 YPD4_RS19950 YPD4_3395 hemC hemC 4306487 4307428 + porphobilinogen deaminase transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis gene gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19950 YPD4_RS19955 YPD4_3396 hemD hemD 4307425 4308174 + uroporphyrinogen III methyltransferase catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane%3B functions in tetrapyrrole and heme biosynthesis gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19955 YPD4_RS19960 YPD4_3397 YPD4_RS19960 4308205 4309329 + uroporphyrinogen III methyltransferase gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19960 YPD4_RS19965 YPD4_3398 YPD4_RS19965 4309332 4310552 + protoheme IX biogenesis protein gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19965 YPD4_RS19970 YPD4_3399 YPD4_RS19970 4310745 4311203 - transposase gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19970 YPD4_RS19975 YPD4_t61 YPD4_RS19975 4312071 4312147 - tRNA-Pro tRNA gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19975 YPD4_RS19980 YPD4_t62 YPD4_RS19980 4312223 4312309 - tRNA-Leu tRNA gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19980 YPD4_RS19985 YPD4_t63 YPD4_RS19985 4312326 4312401 - tRNA-His tRNA gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19985 YPD4_RS19990 YPD4_t64 YPD4_RS19990 4312485 4312561 - tRNA-Arg tRNA gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19990 YPD4_RS19995 YPD4_3400 YPD4_RS19995 4312710 4314101 - alanine glycine permease involved in the transport across the cytoplasmic membrane of D-alanine%2C D-serine and glycine gene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS19995 YPD4_RS20000 YPD4_3401 YPD4_RS20000 4314625 4315365 - UDP-N-acetyl-D-mannosaminuronic acid transferase gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20000 YPD4_RS20005 YPD4_3402 YPD4_RS20005 4315374 4316738 - polymerase enterobacterial common antigen polymerase gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20005 YPD4_RS20010 YPD4_3403 YPD4_RS20010 4316735 4317820 - TDP-N-acetylfucosamine--lipid II N-acetylfucosaminyltransferase catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20010 YPD4_RS20015 YPD4_3404 YPD4_RS20015 4317843 4319099 - translocase involved in the movement of lipid III across the membrane gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20015 YPD4_RS20020 YPD4_3405 YPD4_RS20020 4319101 4320231 - TDP-4-oxo-6-deoxy-D-glucose aminotransferase catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20020 YPD4_RS20025 YPD4_3406 YPD4_RS20025 4320233 4320970 - TDP-fucosamine acetyltransferase gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20025 YPD4_RS20030 YPD4_3407 YPD4_RS20030 4320948 4321829 - glucose-1-phosphate thymidylyltransferase gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20030 YPD4_RS20035 YPD4_3408 YPD4_RS20035 4322124 4323191 - dTDP-glucose 4%2C6-dehydratase gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20035 YPD4_RS20040 YPD4_3409 wecC wecC 4323188 4324450 - UDP-N-acetyl-D-mannosamine dehydrogenase catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20040 YPD4_RS20045 YPD4_3410 YPD4_RS20045 4324447 4325577 - UDP-N-acetylglucosamine 2-epimerase gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20045 YPD4_RS20050 YPD4_3411 YPD4_RS20050 4325858 4326934 - LPS biosynthesis protein Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20050 YPD4_RS20055 YPD4_3412 YPD4_RS20055 4326955 4328037 - UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase catalyzes the formation of alpha-N-acetylglucosaminyl-pyrophosphoryl-undecaprenyl from alpha-N-acetylglucosaminyl 1-phosphate and the lipid carrier undecaprenyl phosphate gene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20055 YPD4_RS20060 YPD4_3413 rho rho 4328587 4329846 - transcription termination factor Rho An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20060 YPD4_RS20065 YPD4_3414 trxA trxA 4330326 4330652 - thioredoxin gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20065 YPD4_RS20070 YPD4_3415 YPD4_RS20070 4330771 4332057 + ATP-dependent RNA helicase RhlB enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome%2C a multi-enzyme complex important in RNA processing and messenger RNA degradation gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20070 YPD4_RS20075 YPD4_RS20075 YPD4_RS20075 4332249 4332566 + guanosine-5'-triphosphate%2C3'-diphosphatepyrophosphatase gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20075 YPD4_RS20080 YPD4_3416 YPD4_RS20080 4332545 4333555 + guanosine-5'-triphosphate%2C3'-diphosphate diphosphatase gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20080 YPD4_RS20085 YPD4_3417 YPD4_RS20085 4333723 4335744 - ATP-dependent DNA helicase Rep single-stranded DNA-dependent ATPase%3B initiates unwinding at a nick in the DNA%3B involved in DNA replication gene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20085 YPD4_RS20090 YPD4_RS20090 YPD4_RS20090 4335743 4335928 + hypothetical protein gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20090 YPD4_RS20095 YPD4_RS20095 YPD4_RS20095 4335948 4336229 + peptidyl-prolyl cis-trans isomerase rotamase C%3B accelerates isomerization of the peptidyl prolyl bond gene gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20095 YPD4_RS20100 YPD4_3418 YPD4_RS20100 4336468 4337259 + glutamine cyclotransferase gene gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20100 YPD4_RS20105 YPD4_3419 YPD4_RS20105 4337356 4338564 + transposase gene gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20105 YPD4_RS20110 YPD4_RS20110 YPD4_RS20110 4338887 4339063 - hypothetical protein gene gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20110 YPD4_RS20115 YPD4_3420 YPD4_RS20115 4339374 4339904 + fimbrial protein gene gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20115 YPD4_RS20120 YPD4_3421 YPD4_RS20120 4339968 4340699 + gram-negative pili assembly chaperone gene gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20120 YPD4_RS20125 YPD4_3422 YPD4_RS20125 4340727 4343354 + outer membrane usher protein gene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20125 YPD4_RS20130 YPD4_3423 YPD4_RS20130 4343461 4344738 + fimbrial protein gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20130 YPD4_RS20135 YPD4_RS20135 YPD4_RS20135 4344704 4345525 + molecular chaperone gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20135 YPD4_RS20140 YPD4_RS20140 YPD4_RS20140 4345549 4345707 + hypothetical protein gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20140 YPD4_RS20145 YPD4_RS20145 YPD4_RS20145 4346160 4346417 - colicin transporter gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20145 YPD4_RS20150 YPD4_RS20150 YPD4_RS20150 4346419 4346670 - HNH nuclease gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20150 YPD4_RS20155 YPD4_RS20155 YPD4_RS20155 4346923 4347186 - hypothetical protein gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20155 YPD4_RS20160 YPD4_3425 YPD4_RS20160 4347186 4348616 - colicin gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20160 YPD4_RS20165 YPD4_RS20165 YPD4_RS20165 4348824 4349024 - hypothetical protein gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20165 YPD4_RS20170 YPD4_3426 YPD4_RS20170 4349205 4350683 - ketol-acid reductoisomerase catalyzes the formation of (R)-2%2C3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20170 YPD4_RS20175 YPD4_3427 YPD4_RS20175 4350969 4351850 + transcriptional regulator participates in controlling several genes involved in isoleucine and valine biosynthesis%3B activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate gene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20175 YPD4_RS20180 YPD4_RS20180 YPD4_RS20180 4351905 4352114 - hypothetical protein gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20180 YPD4_RS20185 YPD4_RS20185 YPD4_RS20185 4352762 4352917 + hypothetical protein gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20185 YPD4_RS20190 YPD4_3428 YPD4_RS20190 4353010 4353681 + hypothetical protein gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20190 YPD4_RS20195 YPD4_3429 YPD4_RS20195 4353665 4354126 + membrane protein gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20195 YPD4_RS20200 YPD4_3430 YPD4_RS20200 4354206 4354667 + membrane protein gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20200 YPD4_RS20205 YPD4_3431 YPD4_RS20205 4354747 4355211 + membrane protein gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20205 YPD4_RS20210 YPD4_3432 YPD4_RS20210 4355342 4356886 - threonine dehydratase threonine deaminase%3B threonine dehydratase%3B in Escherichia coli%2C IlvA is part of the isoleucine biosynthetic pathway gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20210 YPD4_RS20215 YPD4_3433 YPD4_RS20215 4356892 4358742 - dihydroxy-acid dehydratase catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis gene gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20215 YPD4_RS20220 YPD4_3434 YPD4_RS20220 4359053 4359979 - branched-chain amino acid aminotransferase gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20220 YPD4_RS20225 YPD4_RS20225 ilvM ilvM 4360002 4360259 - acetolactate synthase gene gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20225 YPD4_RS20230 YPD4_3435 YPD4_RS20230 4360256 4361902 - acetolactate synthase catalyzes the formation of 2-acetolactate from pyruvate%3B also known as acetolactate synthase large subunit gene gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20230 YPD4_RS20235 YPD4_3436 YPD4_RS20235 4362525 4364048 + ATPase among the AAA+ ATPases%2C the YifB protease family belongs to the Helix 2 insert clade%3B unknown function gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20235 YPD4_RS20240 YPD4_3437 YPD4_RS20240 4364305 4364643 - hypothetical protein gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20240 YPD4_RS20245 YPD4_3438 YPD4_RS20245 4364762 4365643 + transcriptional regulator Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20245 YPD4_RS20250 YPD4_3439 YPD4_RS20250 4365630 4366622 - ABC transporter permease membrane component of a putative sugar ABC transporter system gene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20250 YPD4_RS20255 YPD4_3440 YPD4_RS20255 4366622 4367620 - sugar ABC transporter permease gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20255 YPD4_RS20260 YPD4_3441 YPD4_RS20260 4367653 4369143 - sugar ABC transporter ATP-binding protein gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20260 YPD4_RS20265 YPD4_3442 YPD4_RS20265 4369229 4370185 - sugar ABC transporter substrate-binding protein gene gene4041 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20265 YPD4_RS20270 YPD4_t65 YPD4_RS20270 4371163 4371238 - tRNA-Trp tRNA gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20270 YPD4_RS20275 YPD4_t66 YPD4_RS20275 4371247 4371323 - tRNA-Asp tRNA gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20275 YPD4_RS20280 YPD4_RS20280 YPD4_RS20280 4371449 4371564 - 5S ribosomal RNA rRNA gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20280 YPD4_RS20285 YPD4_r19 YPD4_RS20285 4371656 4374589 - 23S ribosomal RNA rRNA gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20285 YPD4_RS20290 YPD4_t67 YPD4_RS20290 4374833 4374908 - tRNA-Glu tRNA gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20290 YPD4_RS20295 YPD4_r20 YPD4_RS20295 4375042 4376590 - 16S ribosomal RNA rRNA gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20295 YPD4_RS20305 YPD4_3443 YPD4_RS20305 4377044 4377907 - glutamate racemase converts L-glutamate to D-glutamate%2C a component of peptidoglycan gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20305 YPD4_RS20310 YPD4_3444 btuB btuB 4377852 4379729 - vitamin B12 transporter BtuB involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20310 YPD4_RS20315 YPD4_RS20315 YPD4_RS20315 4379965 4380210 - hypothetical protein gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20315 YPD4_RS20320 YPD4_3445 YPD4_RS20320 4380209 4381312 + tRNA/tmRNA (uracil-C(5))-methyltransferase catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20320 YPD4_RS20325 YPD4_3446 YPD4_RS20325 4381446 4381853 - membrane protein gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20325 YPD4_RS20330 YPD4_3447 YPD4_RS20330 4381866 4382501 - transcriptional regulator negatively controls the expression of fabA and fabB%2C genes involved in the unsaturated fatty acid biosynthesis gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20330 YPD4_RS20335 YPD4_3448 YPD4_RS20335 4382719 4384119 + soluble pyridine nucleotide transhydrogenase catalyzes the conversion of NADPH to NADH gene gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20335 YPD4_RS20340 YPD4_3449 YPD4_RS20340 4384102 4385019 - transcriptional regulator Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG%2C gor%2C ahpC%2C ahpF%2C oxyS%2C dps%2C fur and grxA gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20340 YPD4_RS20345 YPD4_3450 YPD4_RS20345 4385166 4385897 + glutathione amide-dependent peroxidase gene gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20345 YPD4_RS20350 YPD4_3451 YPD4_RS20350 4385992 4387455 + dihydrolipoamide dehydrogenase Catalyzes the oxidation of dihydrolipoamide to lipoamide gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20350 YPD4_RS20355 YPD4_3452 YPD4_RS20355 4387571 4388374 - transporter TonB gene gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20355 YPD4_RS20360 YPD4_3453 YPD4_RS20360 4388439 4389767 - hemolysin secretion protein D gene gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20360 YPD4_RS20365 YPD4_3454 YPD4_RS20365 4389843 4391651 - peptidase gene gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20365 YPD4_RS20370 YPD4_3455 YPD4_RS20370 4391817 4392434 - hemophore HasA gene gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20370 YPD4_RS20375 YPD4_3456 YPD4_RS20375 4392656 4395148 - TonB-dependent receptor gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20375 YPD4_RS20380 YPD4_RS20380 YPD4_RS20380 4395459 4395584 + hypothetical protein gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20380 YPD4_RS20385 YPD4_3457 YPD4_RS20385 4395747 4397120 - argininosuccinate lyase catalyzes the formation of arginine from (N-L-arginino)succinate gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20385 YPD4_RS20390 YPD4_RS20390 YPD4_RS20390 4397287 4398061 - acetylglutamate kinase gene gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20390 YPD4_RS20395 YPD4_3459 YPD4_RS20395 4398230 4399234 - N-acetyl-gamma-glutamyl-phosphate reductase gene gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20395 YPD4_RS20400 YPD4_3460 YPD4_RS20400 4399485 4400648 + acetylornithine deacetylase catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis gene gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20400 YPD4_RS20405 YPD4_3461 YPD4_RS20405 4401022 4403658 + phosphoenolpyruvate carboxylase catalyzes the formation of oxaloacetate from phosphoenolpyruvate gene gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20405 YPD4_RS20410 YPD4_3462 YPD4_RS20410 4404400 4404915 + transposase gene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20410 YPD4_RS20415 YPD4_3463 YPD4_RS20415 4404969 4405754 + integrase gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20415 YPD4_RS20420 YPD4_RS20420 YPD4_RS20420 4406109 4406378 - hypothetical protein gene gene4072 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20420 YPD4_RS20425 YPD4_3464 YPD4_RS20425 4406543 4407007 - membrane protein gene gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20425 YPD4_RS20430 YPD4_RS20430 YPD4_RS20430 4407316 4407690 - membrane protein gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20430 YPD4_RS20435 YPD4_3465 glpD glpD 4408089 4409603 + glycerol-3-phosphate dehydrogenase in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions%3B anaerobic expression is repressed by the arcAB system%3B converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8%3B associates with the cytoplasmic membrane gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20435 YPD4_RS20440 YPD4_3466 YPD4_RS20440 4409766 4412213 - glycogen phosphorylase gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20440 YPD4_RS20445 YPD4_3467 glgA glgA 4412366 4413796 - glycogen synthase catalyzes the formation of alpha-1%2C4-glucan chains from ADP-glucose gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20445 YPD4_RS20450 YPD4_3468 glgC glgC 4413864 4415294 - glucose-1-phosphate adenylyltransferase catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20450 YPD4_RS20455 YPD4_3469 YPD4_RS20455 4415304 4417292 - glycogen debranching protein catalyzes the hydrolysis of the alpha-1%2C6-glucosidic linkages in partially depolymerized glycogen gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20455 YPD4_RS20460 YPD4_3470 YPD4_RS20460 4417294 4419477 - 1%2C4-alpha-glucan-branching protein gene gene4080 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20460 YPD4_RS20465 YPD4_3471 YPD4_RS20465 4419983 4421680 + sensor histidine kinase gene gene4081 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20465 YPD4_RS20470 YPD4_3472 YPD4_RS20470 4421888 4430689 - invasin gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20470 YPD4_RS20475 YPD4_RS20475 YPD4_RS20475 4432233 4432574 + hypothetical protein gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20475 YPD4_RS20480 YPD4_RS20480 YPD4_RS20480 4432665 4432952 - hypothetical protein gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20480 YPD4_RS20485 YPD4_RS20485 YPD4_RS20485 4432959 4433258 - hypothetical protein gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20485 YPD4_RS20490 YPD4_RS20490 YPD4_RS20490 4433574 4433855 - hypothetical protein gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20490 YPD4_RS20495 YPD4_3473 YPD4_RS20495 4434024 4435127 - aspartate-semialdehyde dehydrogenase catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20495 YPD4_RS20500 YPD4_3474 YPD4_RS20500 4435485 4436078 + membrane protein gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20500 YPD4_RS20505 YPD4_3475 YPD4_RS20505 4436318 4436707 - hypothetical protein gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20505 YPD4_RS20510 YPD4_RS20510 YPD4_RS20510 4436762 4436902 - hypothetical protein gene gene4090 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20510 YPD4_RS20515 YPD4_RS20515 YPD4_RS20515 4437092 4437325 - type IV secretion protein Rhs gene gene4091 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20515 YPD4_RS20520 YPD4_3476 idnK idnK 4437507 4438010 - gluconokinase gene gene4092 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20520 YPD4_RS20525 YPD4_3477 YPD4_RS20525 4438227 4439543 + idonate transporter gene gene4093 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20525 YPD4_RS20530 YPD4_3478 YPD4_RS20530 4439635 4440630 - transcriptional regulator gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20530 YPD4_RS20535 YPD4_3479 YPD4_RS20535 4440759 4441454 - quercetin 2%2C3-dioxygenase gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20535 YPD4_RS20540 YPD4_RS20540 YPD4_RS20540 4441949 4442218 + hypothetical protein gene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20540 YPD4_RS20545 YPD4_3480 YPD4_RS20545 4442218 4442955 + two-component system response regulator gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20545 YPD4_RS20550 YPD4_3481 YPD4_RS20550 4443140 4444147 - sugar kinase gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20550 YPD4_RS20555 YPD4_3482 YPD4_RS20555 4444157 4445017 - hypothetical protein gene gene4099 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20555 YPD4_RS20560 YPD4_3483 YPD4_RS20560 4445043 4445726 - hypothetical protein gene gene4100 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20560 YPD4_RS20565 YPD4_3484 YPD4_RS20565 4445801 4446745 - ribose ABC transporter substrate-binding protein gene gene4101 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20565 YPD4_RS20570 YPD4_3485 YPD4_RS20570 4446776 4447768 - ribose ABC transporter permease gene gene4102 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20570 YPD4_RS20575 YPD4_3486 YPD4_RS20575 4447761 4449284 - ribose import ATP-binding protein RbsA with RbsBCD acts to import ribose into the cell%3B RbsA contains 2 ATP-binding domain gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20575 YPD4_RS20580 YPD4_3487 YPD4_RS20580 4449473 4452028 + histidine kinase gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20580 YPD4_RS20585 YPD4_3488 YPD4_RS20585 4452164 4453360 - membrane protein gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20585 YPD4_RS20590 YPD4_3489 YPD4_RS20590 4453672 4455168 + phosphate transporter PitA involved in the transport of inorganic phosphate gene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20590 YPD4_RS20595 YPD4_RS20595 YPD4_RS20595 4455274 4455444 + transposase gene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20595 YPD4_RS20600 YPD4_3490 YPD4_RS20600 4455434 4455892 + transposase gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20600 YPD4_RS20605 YPD4_3491 YPD4_RS20605 4456025 4456360 - universal stress protein B ppGpp-dependent%2C membrane associated%2C stress protein produced under conditions of nutrient deprivation%2C osmotic shock and oxidative stress gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20605 YPD4_RS20610 YPD4_3492 YPD4_RS20610 4457068 4457514 + universal stress protein A involved in resistance to DNA-damaging agents gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20610 YPD4_RS20615 YPD4_3493 YPD4_RS20615 4457761 4459104 + glutamate dehydrogenase converts 2-oxoglutarate to glutamate%3B in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction%3B uses NADPH%3B forms a homohexamer gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20615 YPD4_RS20620 YPD4_3494 YPD4_RS20620 4459352 4460686 + peptidase M10 gene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20620 YPD4_RS20625 YPD4_3495 YPD4_RS20625 4460751 4461521 - ribosomal RNA small subunit methyltransferase J predicted SAM-dependent methyltransferase gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20625 YPD4_RS20630 YPD4_3496 YPD4_RS20630 4461525 4463567 - oligopeptidase A gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20630 YPD4_RS20635 YPD4_3497 YPD4_RS20635 4463896 4464738 + hypothetical protein gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20635 YPD4_RS20640 YPD4_3498 YPD4_RS20640 4464924 4466276 + glutathione reductase catalyzes the reduction of 2 glutathione to glutathione disulfide%3B maintains high levels of reduced glutathione in the cytosol%3B involved in redox regulation and oxidative defense gene gene4116 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20640 YPD4_RS20645 YPD4_3499 YPD4_RS20645 4466468 4467595 + hypothetical protein gene gene4117 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20645 YPD4_RS20650 YPD4_3500 YPD4_RS20650 4467773 4469041 + gluconate:proton symporter gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20650 YPD4_RS20655 YPD4_3501 YPD4_RS20655 4469052 4470188 + glycerate kinase gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20655 YPD4_RS20660 YPD4_3502 YPD4_RS20660 4470434 4470940 - hypothetical protein gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20660 YPD4_RS20665 YPD4_3503 YPD4_RS20665 4471008 4471505 - hypothetical protein gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20665 YPD4_RS20670 YPD4_3504 YPD4_RS20670 4471507 4472286 - hypothetical protein gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20670 YPD4_RS20675 YPD4_3505 YPD4_RS20675 4472464 4475676 - autotransporter gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20675 YPD4_RS20680 YPD4_3506 YPD4_RS20680 4476354 4477436 + membrane protein gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20680 YPD4_RS20685 YPD4_3507 YPD4_RS20685 4477440 4478237 + CDP-diacylglycerol pyrophosphatase gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20685 YPD4_RS20690 YPD4_3508 YPD4_RS20690 4478214 4480430 - hypothetical protein gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20690 YPD4_RS20695 YPD4_3509 YPD4_RS20695 4480735 4481580 - cyclic di-GMP phosphodiesterase in Escherichia coli this protein is involved in flagellar function gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20695 YPD4_RS20700 YPD4_RS20700 YPD4_RS20700 4481799 4481999 + tautomerase gene gene4128 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20700 YPD4_RS20705 YPD4_3510 YPD4_RS20705 4482278 4483222 + 2-dehydro-3-deoxygluconokinase catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate-6-phosphate from 2-dehydro-3-deoxy-D-gluconate gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20705 YPD4_RS20710 YPD4_3511 YPD4_RS20710 4483386 4484885 - hypothetical protein gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20710 YPD4_RS20715 YPD4_3512 YPD4_RS20715 4485250 4486539 - C4-dicarboxylate transporter involved in the transport of C4-dicarboxylates across the membrane gene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20715 YPD4_RS20720 YPD4_3513 YPD4_RS20720 4486994 4487473 - hypothetical protein gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20720 YPD4_RS20725 YPD4_3514 YPD4_RS20725 4487598 4489316 - pectate lyase gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20725 YPD4_RS20730 YPD4_3515 YPD4_RS20730 4489562 4490266 - porin gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20730 YPD4_RS20735 YPD4_3516 YPD4_RS20735 4490906 4492888 - biofilm formation regulator HmsP HmsP in Yersinia pestis plays a role in invasion of epithelial cells%3B the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation%3B inner membrane protein gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20735 YPD4_RS20740 YPD4_3517 YPD4_RS20740 4493235 4494134 - endonuclease III catalyzes the hydrolysis of 1%2C4-beta-D-glucosidic linkages in cellulose%2C lichenin and cereal beta-D-glucans gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20740 YPD4_RS20745 YPD4_3518 dppF dppF 4494453 4495460 - peptide ABC transporter ATP-binding protein Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20745 YPD4_RS20750 YPD4_3519 dppD dppD 4495526 4496506 - peptide ABC transporter ATP-binding protein DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20750 YPD4_RS20755 YPD4_3520 YPD4_RS20755 4496520 4497422 - peptide ABC transporter gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20755 YPD4_RS20760 YPD4_3521 YPD4_RS20760 4497504 4498451 - peptide ABC transporter permease gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20760 YPD4_RS20765 YPD4_3522 YPD4_RS20765 4498747 4500342 - peptide ABC transporter substrate-binding protein DppABCDF is involved in the transport of dipeptides%3B also binds heme and mediates chemotaxis to dipeptides gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20765 YPD4_RS20770 YPD4_RS20770 YPD4_RS20770 4500745 4500951 - hypothetical protein gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20770 YPD4_RS20775 YPD4_3523 YPD4_RS20775 4501011 4502681 - hemolysin secretion protein ShlB gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20775 YPD4_RS20780 YPD4_RS20780 YPD4_RS20780 4502883 4504275 - hemagglutinin gene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20780 YPD4_RS20785 YPD4_t68 YPD4_RS20785 4504588 4504664 - tRNA-Pro tRNA gene4145 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20785 YPD4_RS20790 YPD4_3525 YPD4_RS20790 4504781 4506112 - hypothetical protein gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20790 YPD4_RS20795 YPD4_3526 YPD4_RS20795 4506207 4506887 - two-component system sensor histidine kinase gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20795 YPD4_RS20800 YPD4_3527 YPD4_RS20800 4507012 4507791 - transposase gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20800 YPD4_RS20805 YPD4_3528 YPD4_RS20805 4507791 4508813 - transposase gene gene4149 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20805 YPD4_RS20810 YPD4_3529 YPD4_RS20810 4508895 4509695 - hypothetical protein gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20810 YPD4_RS20815 YPD4_3530 YPD4_RS20815 4509692 4510282 - transcriptional regulator response regulator in two-component regulatory system wtih UhpB%3B phosphorylated UhpA is a positive activator uhpT%2C a hexose phosphates transporter gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20815 YPD4_RS20820 YPD4_3531 YPD4_RS20820 4510398 4512089 - phosphoethanolamine transferase catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20820 YPD4_RS20825 YPD4_3532 YPD4_RS20825 4512627 4514090 - membrane protein gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20825 YPD4_RS20830 YPD4_3533 proY proY 4514558 4515961 - permease cryptic permease that may be involved in the transport of proline across the inner membrane%3B in Salmonella typhimurium%2C the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20830 YPD4_RS20835 YPD4_3534 YPD4_RS20835 4516379 4517911 - histidine ammonia-lyase catalyzes the degradation of histidine to urocanate and ammmonia gene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20835 YPD4_RS20840 YPD4_3535 YPD4_RS20840 4517908 4519599 - urocanate hydratase catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20840 YPD4_RS20845 YPD4_3536 YPD4_RS20845 4520326 4521270 + pyridoxal-5'-phosphate-dependent protein gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20845 YPD4_RS20850 YPD4_3537 YPD4_RS20850 4521267 4521833 + adenine phosphoribosyltransferase catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis gene gene4158 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20850 YPD4_RS20855 YPD4_3538 YPD4_RS20855 4521916 4522845 + transporter gene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20855 YPD4_RS20860 YPD4_3539 YPD4_RS20860 4522847 4524091 + hypothetical protein gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20860 YPD4_RS20865 YPD4_3540 YPD4_RS20865 4524614 4525567 + iron ABC transporter substrate-binding protein gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20865 YPD4_RS20870 YPD4_3541 YPD4_RS20870 4525577 4526536 + iron ABC transporter permease gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20870 YPD4_RS20875 YPD4_3542 YPD4_RS20875 4526526 4527533 + enterobactin ABC transporter permease gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20875 YPD4_RS20880 YPD4_3543 YPD4_RS20880 4527530 4528288 + iron ABC transporter ATP-binding protein gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20880 YPD4_RS20885 YPD4_3544 YPD4_RS20885 4528285 4528785 - toxin Fic gene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20885 YPD4_RS20890 YPD4_RS20890 YPD4_RS20890 4529021 4529206 - XRE family transcriptional regulator gene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20890 YPD4_RS20895 YPD4_3545 YPD4_RS20895 4530218 4530580 + 2-hydroxyacid dehydrogenase gene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20895 YPD4_RS20900 YPD4_RS20900 YPD4_RS20900 4530773 4531258 + transposase gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20900 YPD4_RS20905 YPD4_RS20905 YPD4_RS20905 4531258 4531551 + transposase gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20905 YPD4_RS20910 YPD4_RS20910 YPD4_RS20910 4531725 4531970 + hypothetical protein gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20910 YPD4_RS20915 YPD4_3546 YPD4_RS20915 4532238 4533617 - hypothetical protein gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20915 YPD4_RS20920 YPD4_3547 YPD4_RS20920 4533604 4534797 - integrase gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20920 YPD4_RS20925 YPD4_3548 YPD4_RS20925 4535183 4536376 - AraC family transcriptional regulator gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20925 YPD4_RS20930 YPD4_3549 YPD4_RS20930 4536466 4537650 - xylose ABC transporter permease gene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20930 YPD4_RS20935 YPD4_3550 YPD4_RS20935 4537637 4539169 - xylose import ATP-binding protein XylG with XylFH is part of the high affinity xylose ABC transporter gene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20935 YPD4_RS20940 YPD4_3551 xylF xylF 4539377 4540372 - xylose ABC transporter substrate-binding protein periplasmic substrate-binding component of the ATP-dependent xylose transport system%3B high affinity gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20940 YPD4_RS20945 YPD4_3552 YPD4_RS20945 4540835 4542154 + xylose isomerase catalyzes the interconversion of D-xylose to D-xylulose gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20945 YPD4_RS20950 YPD4_3553 YPD4_RS20950 4542278 4543732 + xylulokinase catalyzes the formation of D-xylulose-5-phosphate fro D-xylulose gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20950 YPD4_RS20955 YPD4_3554 YPD4_RS20955 4543850 4544836 - hypothetical protein gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20955 YPD4_RS20960 YPD4_3555 YPD4_RS20960 4544875 4545642 - fimbrial chaperone protein StdC gene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20960 YPD4_RS20970 YPD4_3557 YPD4_RS20970 4545735 4548225 - fimbrial protein gene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20970 YPD4_RS20975 YPD4_3558 YPD4_RS20975 4548301 4548858 - fimbrial protein gene gene4182 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20975 YPD4_RS20980 YPD4_3559 YPD4_RS20980 4549740 4550732 - O-acetyltransferase involved in enterobacterial common antigen biosynthesis%3B catalyzes the addition of O-acetyl groups to the N-acetyl-D-glucosamine residues of the trisaccharide repeat units of the enterobacterial common antigen gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20980 YPD4_RS20985 YPD4_RS20985 YPD4_RS20985 4550729 4550929 - hypothetical protein gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20985 YPD4_RS20990 YPD4_RS20990 YPD4_RS20990 4551095 4551610 + transposase gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20990 YPD4_RS20995 YPD4_3561 YPD4_RS20995 4551664 4552449 + integrase gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS20995 YPD4_RS21000 YPD4_3562 YPD4_RS21000 4552922 4554151 + multidrug transporter MdfA gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21000 YPD4_RS21005 YPD4_RS21005 YPD4_RS21005 4554300 4554503 - hypothetical protein gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21005 YPD4_RS21010 YPD4_RS21010 YPD4_RS21010 4554624 4554782 + hypothetical protein gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21010 YPD4_RS21015 YPD4_3563 YPD4_RS21015 4554861 4555442 + membrane protein gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21015 YPD4_RS21020 YPD4_3564 YPD4_RS21020 4555456 4555788 - membrane protein gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21020 YPD4_RS21025 YPD4_3565 YPD4_RS21025 4556077 4556541 + transposase gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21025 YPD4_RS21030 YPD4_3566 YPD4_RS21030 4556548 4558500 - selenocysteine-specific translation elongation factor gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21030 YPD4_RS21035 YPD4_3567 YPD4_RS21035 4558497 4559885 - L-seryl-tRNA(Sec) selenium transferase catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21035 YPD4_RS21040 YPD4_3568 YPD4_RS21040 4560069 4560998 - protein FdhE required for the formation of active formate dehydrogenase gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21040 YPD4_RS21045 YPD4_3569 YPD4_RS21045 4560998 4561672 - formate dehydrogenase-N subunit gamma cytochrome b556(FDO) component%3B heme containing gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21045 YPD4_RS21050 YPD4_3570 YPD4_RS21050 4561669 4562640 - formate dehydrogenase-N subunit beta beta subunit%3B involved in the use of formate as an electron donor during aerobic respiration%3B acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit) gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21050 YPD4_RS21055 YPD4_3571 YPD4_RS21055 4562653 4565064 - formate dehydrogenase subunit alpha gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21055 YPD4_RS21060 YPD4_3572 YPD4_RS21060 4565113 4565700 - sulfate ABC transporter substrate-binding protein gene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21060 YPD4_RS21065 YPD4_3573 YPD4_RS21065 4565897 4566721 + protein FdhD gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21065 YPD4_RS21070 YPD4_3574 YPD4_RS21070 4567157 4567780 + superoxide dismutase SodA%3B manganese binding%3B only present under aerobic conditions%3B destroys free radicals gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21070 YPD4_RS21075 YPD4_3575 YPD4_RS21075 4568124 4570073 + chemotaxis protein gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21075 YPD4_RS21080 YPD4_3576 YPD4_RS21080 4570263 4570595 + membrane protein gene gene4203 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21080 YPD4_RS21085 YPD4_3577 YPD4_RS21085 4571127 4571603 + hypothetical protein gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21085 YPD4_RS21090 YPD4_3578 YPD4_RS21090 4571772 4572128 - hypothetical protein gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21090 YPD4_RS21095 YPD4_3579 YPD4_RS21095 4572377 4572931 - mannitol repressor protein gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21095 YPD4_RS21100 YPD4_3580 YPD4_RS21100 4573138 4574301 - mannitol-1-phosphate 5-dehydrogenase gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21100 YPD4_RS21105 YPD4_RS21105 YPD4_RS21105 4574438 4576368 - PTS mannitol transporter subunit IICBA catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B subunit IIC forms the translocation channel and contains the specific substrate-binding site%3B subunit IIA is phosphorylated and transfers the phosphoryl group to the IIB subunit%3B subunit IIB transfers the phosphoryl group to the substrate gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21105 YPD4_RS21110 YPD4_3583 YPD4_RS21110 4577018 4577737 - hypothetical protein gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21110 YPD4_RS21115 YPD4_3584 glyS glyS 4578210 4580279 - glycine--tRNA ligase subunit beta glycine--tRNA ligase beta chain%3B glyS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21115 YPD4_RS21120 YPD4_3585 YPD4_RS21120 4580289 4581203 - glycine--tRNA ligase subunit alpha gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21120 YPD4_RS21125 YPD4_3586 YPD4_RS21125 4581531 4582104 + DNA-3-methyladenine glycosidase gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21125 YPD4_RS21130 YPD4_3587 YPD4_RS21130 4582101 4582556 + acetyltransferase gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21130 YPD4_RS21135 YPD4_3588 YPD4_RS21135 4582914 4583573 + hypothetical protein gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21135 YPD4_RS21140 YPD4_3589 YPD4_RS21140 4583704 4584348 - transcriptional regulator gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21140 YPD4_RS21145 YPD4_3590 YPD4_RS21145 4584867 4585847 + glyoxylate/hydroxypyruvate reductase B catalyzes the formation of glycolate from glyoxylate and glycerate from hydroxypyruvate gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21145 YPD4_RS21150 YPD4_3591 malS malS 4586136 4588199 + alpha-amylase periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB%3B hydrolyzes alpha-(1%2C4) glycosidic linkages%3B contains internal disulfide bonds gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21150 YPD4_RS21155 YPD4_3592 YPD4_RS21155 4588614 4589057 + membrane protein gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21155 YPD4_RS21160 YPD4_3593 avtA avtA 4589512 4590777 + valine--pyruvate aminotransferase transaminase C%3B catalyzes transamination of alanine%2C valine%2C and 2-aminobutyrate with their respective 2-keto acids%3B also catalyzes terminal step in valine biosynthesis gene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21160 YPD4_RS21165 YPD4_3594 YPD4_RS21165 4590890 4592548 - transporter gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21165 YPD4_RS21170 YPD4_3595 YPD4_RS21170 4592921 4593385 - heat-shock protein IbpB gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21170 YPD4_RS21175 YPD4_3596 YPD4_RS21175 4593666 4594079 - heat-shock protein IbpA with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21175 YPD4_RS21180 YPD4_3597 YPD4_RS21180 4594447 4594785 + hypothetical protein gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21180 YPD4_RS21185 YPD4_3598 YPD4_RS21185 4594825 4595139 - hypothetical protein gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21185 YPD4_RS21190 YPD4_3599 YPD4_RS21190 4595129 4595440 - hypothetical protein gene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21190 YPD4_RS21195 YPD4_3600 YPD4_RS21195 4595648 4596610 + hypothetical protein gene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21195 YPD4_RS21200 YPD4_3601 YPD4_RS21200 4596604 4597557 + ornithine cyclodeaminase catalyzes the formation of L-proline from L-ornithine gene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21200 YPD4_RS21205 YPD4_RS21205 YPD4_RS21205 4597764 4598279 + transposase gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21205 YPD4_RS21210 YPD4_3603 YPD4_RS21210 4598333 4599118 + integrase gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21210 YPD4_RS21215 YPD4_3604 YPD4_RS21215 4599509 4600318 - sugar phosphate phosphatase YidA%3B catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate)%2C mannose 1-phosphate and p-nitrophenyl phosphate%3B hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form%3B member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins gene gene4230 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21215 YPD4_RS21220 YPD4_3605 gyrB gyrB 4600534 4602948 - DNA gyrase subunit B negatively supercoils closed circular double-stranded DNA gene gene4231 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21220 YPD4_RS21225 YPD4_3606 recF recF 4602968 4604053 - DNA recombination protein RecF Required for DNA replication%3B binds preferentially to single-stranded%2C linear DNA gene gene4232 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21225 YPD4_RS21230 YPD4_RS21230 YPD4_RS21230 4604052 4604222 + recombinase F gene gene4233 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21230 YPD4_RS21235 YPD4_3607 YPD4_RS21235 4604226 4605326 - DNA polymerase III subunit beta binds the polymerase to DNA and acts as a sliding clamp gene gene4234 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21235 YPD4_RS21240 YPD4_RS21240 dnaA dnaA 4605331 4606721 - chromosomal replication initiation protein binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself. gene gene4235 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21240 YPD4_RS21245 YPD4_RS21245 rpmH rpmH 4607431 4607571 + 50S ribosomal protein L34 in Escherichia coli transcription of this gene is enhanced by polyamines gene gene4236 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21245 YPD4_RS21250 YPD4_RS21250 rnpA rnpA 4607590 4607949 + ribonuclease P protein component protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus%3B this enzyme also cleaves other RNA substrates gene gene4237 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21250 YPD4_RS21255 YPD4_3610 YPD4_RS21255 4608173 4609813 + protein translocase component YidC functions to insert inner membrane proteins into the IM in Escherichia coli%3B interacts with transmembrane segments%3B functions in both Sec-dependent and -independent membrane insertion%3B similar to Oxa1p in mitochondria gene gene4238 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21255 YPD4_RS21260 YPD4_3611 trmE trmE 4609956 4611320 + tRNA modification GTPase MnmE in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine%2C which is found in the wobble position of some tRNAs and affects ribosomal frameshifting%3B shows potassium-dependent dimerization and GTP hydrolysis%3B also involved in regulation of glutamate-dependent acid resistance and activation of gadE gene gene4239 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21260 YPD4_RS21265 YPD4_3612 YPD4_RS21265 4611506 4612705 + trans-2-enoyl-CoA reductase enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity gene gene4240 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21265 YPD4_RS21270 YPD4_RS21270 YPD4_RS21270 4613173 4613454 - membrane protein gene gene4241 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21270 YPD4_RS21275 YPD4_3613 YPD4_RS21275 4613516 4614136 - membrane protein gene gene4242 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21275 YPD4_RS21280 YPD4_3614 YPD4_RS21280 4614681 4616009 - adenine permease involved in the transport or adenine gene gene4243 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21280 YPD4_RS21285 YPD4_3615 YPD4_RS21285 4616502 4617170 + 6-phosphogluconate phosphatase gene gene4244 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21285 YPD4_RS21290 YPD4_3616 YPD4_RS21290 4617205 4617960 - ABC transporter permease gene gene4245 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21290 YPD4_RS21295 YPD4_3617 YPD4_RS21295 4617962 4618699 - ABC transporter permease gene gene4246 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21295 YPD4_RS21300 YPD4_3618 YPD4_RS21300 4618882 4619736 - amino acid ABC transporter substrate-binding protein gene gene4247 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21300 YPD4_RS21305 YPD4_3619 YPD4_RS21305 4619956 4620627 - membrane protein gene gene4248 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21305 YPD4_RS21310 YPD4_3620 YPD4_RS21310 4620923 4621645 - transcriptional regulator regulates several genes involved in high affinity phosphate uptake%3B under conditions of high phosphate concentrations downregulates the PHO regulon gene gene4249 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21310 YPD4_RS21315 YPD4_3621 YPD4_RS21315 4621733 4622509 - phosphate import ATP-binding protein PstB 2 gene gene4250 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21315 YPD4_RS21320 YPD4_3622 pstA pstA 4622590 4623477 - phosphate ABC transporter permease Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions gene gene4251 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21320 YPD4_RS21325 YPD4_3623 pstC pstC 4623479 4624435 - phosphate transporter permease subunit PstC part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions gene gene4252 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21325 YPD4_RS21330 YPD4_3624 YPD4_RS21330 4624664 4625704 - phosphate ABC transporter substrate-binding protein gene gene4253 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21330 YPD4_RS21335 YPD4_3625 YPD4_RS21335 4626187 4628016 - glutamine--fructose-6-phosphate aminotransferase [isomerizing] Catalyzes the first step in hexosamine metabolism%2C converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source gene gene4254 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21335 YPD4_RS21340 YPD4_3626 glmU glmU 4628217 4629587 - bifunctional protein GlmU forms a homotrimer%3B catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc%3B function in cell wall synthesis gene gene4255 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21340 YPD4_RS21345 YPD4_3627 atpC atpC 4630208 4630630 - ATP synthase epsilon chain part of catalytic core of ATP synthase%3B alpha(3)beta(3)gamma(1)delta(1)epsilon(1)%3B involved in producing ATP from ADP in the presence of the proton motive force across the membrane gene gene4256 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21345 YPD4_RS21350 YPD4_3628 YPD4_RS21350 4630652 4632034 - ATP synthase subunit beta gene gene4257 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21350 YPD4_RS21355 YPD4_3629 YPD4_RS21355 4632190 4633053 - ATP synthase subunit gamma Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit gene gene4258 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21355 YPD4_RS21360 YPD4_3630 YPD4_RS21360 4633115 4634656 - ATP synthase subunit alpha produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit gene gene4259 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21360 YPD4_RS21365 YPD4_3631 YPD4_RS21365 4634671 4635204 - ATP synthase subunit delta Produces ATP from ADP in the presence of a proton gradient across the membrane%3B the delta subunit is part of the catalytic core of the ATP synthase complex gene gene4260 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21365 YPD4_RS21370 YPD4_3632 YPD4_RS21370 4635219 4635689 - ATP synthase subunit b Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. gene gene4261 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21370 YPD4_RS21375 YPD4_RS21375 YPD4_RS21375 4635751 4635990 - ATP synthase subunit c Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 gene gene4262 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21375 YPD4_RS21380 YPD4_3633 YPD4_RS21380 4636040 4636864 - ATP synthase subunit a Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 gene gene4263 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21380 YPD4_RS21385 YPD4_3634 YPD4_RS21385 4636904 4637287 - F0F1 ATP synthase subunit I gene gene4264 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21385 YPD4_RS21390 YPD4_3635 gidB gidB 4637954 4638574 - ribosomal RNA small subunit methyltransferase G glucose-inhibited division protein B%3B SAM-dependent methyltransferase%3B methylates the N7 position of guanosine in position 527 of 16S rRNA gene gene4265 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21390 YPD4_RS21395 YPD4_3636 YPD4_RS21395 4638720 4640609 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG gene gene4266 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21395 YPD4_RS21415 YPD4_pCD0001 YPD4_RS21415 495 992 + transposase gene gene4268 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21415 YPD4_RS21420 YPD4_pCD0002 YPD4_RS21420 1055 1447 - YopE regulator gene gene4269 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21420 YPD4_RS21425 YPD4_pCD0003 YPD4_RS21425 1716 2300 + virulence protein YopE gene gene4270 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21425 YPD4_RS21430 YPD4_pCD0004 YPD4_RS21430 2440 2739 - plasmid stabilization protein gene gene4271 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21430 YPD4_RS21435 YPD4_RS21435 YPD4_RS21435 2732 2974 - antitoxin ParD gene gene4272 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21435 YPD4_RS21440 YPD4_RS21440 YPD4_RS21440 3820 4068 - hypothetical protein gene gene4273 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21440 YPD4_RS21445 YPD4_pCD0005 YPD4_RS21445 4236 5201 - chromosome partitioning protein ParB gene gene4274 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21445 YPD4_RS21450 YPD4_pCD0006 YPD4_RS21450 5198 6364 - chromosome partitioning protein ParA gene gene4275 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21450 YPD4_RS21455 YPD4_RS21455 YPD4_RS21455 7164 7358 - transposase gene gene4276 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21455 YPD4_RS21460 YPD4_pCD0007 YPD4_RS21460 7470 7928 - transposase gene gene4277 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21460 YPD4_RS21465 YPD4_pCD0008 YPD4_RS21465 7952 8269 - transposase gene gene4278 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21465 YPD4_RS21470 YPD4_pCD0009 YPD4_RS21470 8376 8993 - conjugal transfer protein TraT gene gene4279 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21470 YPD4_RS21475 YPD4_pCD0010 YPD4_RS21475 9603 10151 - hypothetical protein gene gene4280 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21475 YPD4_RS21480 YPD4_pCD0011 YPD4_RS21480 10651 11619 + cysteine protease gene gene4281 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21480 YPD4_RS21485 YPD4_pCD0012 YPD4_RS21485 11619 12017 + chaperone protein SycT gene gene4282 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21485 YPD4_RS21490 YPD4_pCD0013 YPD4_RS21490 12061 12372 - hypothetical protein gene gene4283 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21490 YPD4_RS21495 YPD4_pCD0014 YPD4_RS21495 12722 13141 + hypothetical protein gene gene4284 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21495 YPD4_RS21500 YPD4_RS21500 YPD4_RS21500 14119 14334 + transposase gene gene4285 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21500 YPD4_RS21505 YPD4_pCD0015 YPD4_RS21505 14377 15606 - outer membrane protein YopM gene gene4286 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21505 YPD4_RS21510 YPD4_RS21510 YPD4_RS21510 16000 16209 - hypothetical protein gene gene4287 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21510 YPD4_RS21515 YPD4_pCD0017 YPD4_RS21515 17335 18255 - hypothetical protein gene gene4288 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21515 YPD4_RS21520 YPD4_pCD0018 YPD4_RS21520 18274 19479 - hypothetical protein gene gene4289 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21520 YPD4_RS21525 YPD4_pCD0019 YPD4_RS21525 19457 19963 - low calcium response locus protein H gene gene4290 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21525 YPD4_RS21530 YPD4_pCD0020 YPD4_RS21530 19976 20956 - Virulence-associated V antigen gene gene4291 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21530 YPD4_RS21535 YPD4_RS21535 YPD4_RS21535 20958 21245 - low calcium response locus protein G gene gene4292 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21535 YPD4_RS21540 YPD4_pCD0021 YPD4_RS21540 21287 21727 - low calcium response locus protein R gene gene4293 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21540 YPD4_RS21545 YPD4_pCD0022 YPD4_RS21545 21724 23838 - low calcium response locus protein D gene gene4294 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21545 YPD4_RS21550 YPD4_pCD0023 YPD4_RS21550 23825 24163 - molecular chaperone gene gene4295 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21550 YPD4_RS21555 YPD4_pCD0024 YPD4_RS21555 24166 24534 - translocation protein YopX gene gene4296 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21555 YPD4_RS21560 YPD4_pCD0025 YPD4_RS21560 24531 24902 - chaperone protein SycN gene gene4297 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21560 YPD4_RS21565 YPD4_RS21565 YPD4_RS21565 24889 25167 - protein TyeA gene gene4298 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21565 YPD4_RS21570 YPD4_pCD0026 YPD4_RS21570 25148 26029 - outer membrane protein YopN gene gene4299 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21570 YPD4_RS21575 YPD4_pCD0027 fliI fliI 26227 27546 + ATP synthase involved in type III protein export during flagellum assembly gene gene4300 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21575 YPD4_RS21580 YPD4_pCD0028 YPD4_RS21580 27543 28007 + translocation protein YopO gene gene4301 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21580 YPD4_RS21585 YPD4_pCD0029 YPD4_RS21585 28007 29374 + translocation protein YopP gene gene4302 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21585 YPD4_RS21590 YPD4_pCD0030 YPD4_RS21590 29371 30294 + translocation protein YopQ gene gene4303 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21590 YPD4_RS21595 YPD4_pCD0031 ssaR ssaR 30291 30944 + translocation protein YopR part of a set of proteins involved in the infection of eukaryotic cells%3B in plant pathogens involved in the hypersensitivity response gene gene4304 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21595 YPD4_RS21600 YPD4_RS21600 YPD4_RS21600 30946 31212 + translocation protein YopS gene gene4305 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21600 YPD4_RS21605 YPD4_pCD0032 YPD4_RS21605 31209 31994 + translocation protein YopT gene gene4306 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21605 YPD4_RS21610 YPD4_pCD0033 YPD4_RS21610 31994 33058 + translocation protein YopU gene gene4307 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21610 YPD4_RS21615 YPD4_pCD0034 YPD4_RS21615 33634 34029 + type III secretion system chaperone VirG gene gene4308 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21615 YPD4_RS21620 YPD4_pCD0035 YPD4_RS21620 34153 34968 + thermoregulatory protein LcrF gene gene4309 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21620 YPD4_RS21625 YPD4_RS21625 YPD4_RS21625 35047 35145 + translocation protein YopA gene gene4310 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21625 YPD4_RS21630 YPD4_pCD0036 YPD4_RS21630 35371 35784 + chaperone protein YscB gene gene4311 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21630 YPD4_RS21635 YPD4_RS21635 YPD4_RS21635 35790 37614 + secretin gene gene4312 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21635 YPD4_RS21640 YPD4_RS21640 YPD4_RS21640 37611 38870 + preprotein translocase D gene gene4313 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21640 YPD4_RS21645 YPD4_RS21645 YPD4_RS21645 38867 39067 + preprotein translocase SecE gene gene4314 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21645 YPD4_RS21650 YPD4_RS21650 YPD4_RS21650 39068 39331 + type III export protein pscF gene gene4315 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21650 YPD4_RS21655 YPD4_pCD0041 YPD4_RS21655 39333 39680 + preprotein translocase G gene gene4316 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21655 YPD4_RS21660 YPD4_pCD0042 YPD4_RS21660 39677 40174 + translocation protein YopH gene gene4317 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21660 YPD4_RS21665 YPD4_pCD0043 YPD4_RS21665 40184 40522 + preprotein translocase I gene gene4318 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21665 YPD4_RS21670 YPD4_pCD0044 YPD4_RS21670 40529 41263 + translocation protein YopJ gene gene4319 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21670 YPD4_RS21675 YPD4_pCD0045 YPD4_RS21675 41266 41892 + preprotein translocase K gene gene4320 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21675 YPD4_RS21680 YPD4_pCD0046 YPD4_RS21680 41871 42503 + type III secretion system protein gene gene4321 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21680 YPD4_RS21685 YPD4_pCD0047 YPD4_RS21685 42728 43075 + translocation protein YopM gene gene4322 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21685 YPD4_RS21690 YPD4_RS21690 YPD4_RS21690 43623 43889 + low calcium response locus protein S gene gene4323 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21690 YPD4_RS21695 YPD4_pCD0048 YPD4_RS21695 43925 44347 + low calcium response locus protein T gene gene4324 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21695 YPD4_RS21700 YPD4_RS21700 YPD4_RS21700 44365 44652 + integrase gene gene4325 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21700 YPD4_RS21705 YPD4_pCD0049 YPD4_RS21705 45164 46570 - tyrosine-protein phosphatase YopH gene gene4326 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21705 YPD4_RS21710 YPD4_RS21710 YPD4_RS21710 46853 47059 - transposase gene gene4327 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21710 YPD4_RS21715 YPD4_pCD0050 YPD4_RS21715 47191 47667 + integrase gene gene4328 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21715 YPD4_RS21720 YPD4_pCD0051 YPD4_RS21720 48253 49119 - effector protein YopJ gene gene4329 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21720 YPD4_RS21725 YPD4_pCD0052 YPD4_RS21725 49515 51713 - protein kinase YpkA gene gene4330 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21725 YPD4_RS21730 YPD4_pCD0053 YPD4_RS21730 51721 52170 - molecular chaperone Tir gene gene4331 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21730 YPD4_RS21735 YPD4_RS21735 YPD4_RS21735 52466 52660 - transposase gene gene4332 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21735 YPD4_RS21740 YPD4_pCD0054 YPD4_RS21740 54328 55194 - replication protein gene gene4333 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21740 YPD4_RS21745 YPD4_RS21745 YPD4_RS21745 55187 55261 - RepA leader peptide Tap-containing protein acts to regulate the expression of the plasmid replication protein RepA in the IncFII plasmid group gene gene4334 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21745 YPD4_RS21750 YPD4_RS21750 YPD4_RS21750 55503 55757 - replication protein gene gene4335 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21750 YPD4_RS21755 YPD4_RS21755 YPD4_RS21755 55895 56143 - phospholipase gene gene4336 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21755 YPD4_RS21760 YPD4_pCD0055 YPD4_RS21760 56560 56967 - transposase gene gene4337 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21760 YPD4_RS21765 YPD4_pCD0056 YPD4_RS21765 56991 57308 - transposase gene gene4338 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21765 YPD4_RS21770 YPD4_pCD0057 YPD4_RS21770 57480 57938 - DNA helicase TraI gene gene4339 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21770 YPD4_RS21775 YPD4_RS21775 YPD4_RS21775 58007 58276 + transposase gene gene4340 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21775 YPD4_RS21780 YPD4_RS21780 YPD4_RS21780 58273 58479 - hypothetical protein gene gene4341 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21780 YPD4_RS21785 YPD4_RS21785 YPD4_RS21785 58602 59177 - adhesin gene gene4342 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21785 YPD4_RS21790 YPD4_RS21790 YPD4_RS21790 59654 59905 - adhesin gene gene4343 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21790 YPD4_RS21795 YPD4_pCD0059 YPD4_RS21795 60511 60891 + transposase gene gene4344 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21795 YPD4_RS21800 YPD4_pCD0060 YPD4_RS21800 60888 63203 - transposase gene gene4345 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21800 YPD4_RS21805 YPD4_pCD0061 YPD4_RS21805 63367 63918 + recombinase gene gene4346 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21805 YPD4_RS21810 YPD4_pCD0062 YPD4_RS21810 63937 64401 + hypothetical protein gene gene4347 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21810 YPD4_RS21815 YPD4_pCD0063 YPD4_RS21815 64540 64869 + hypothetical protein gene gene4348 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21815 YPD4_RS21820 YPD4_RS21820 YPD4_RS21820 64969 65235 + transposase gene gene4349 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21820 YPD4_RS21825 YPD4_pCD0064 YPD4_RS21825 65241 66068 + transposase gene gene4350 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21825 YPD4_RS21830 YPD4_pCD0065 YPD4_RS21830 66216 66641 - yopH targeting protein gene gene4351 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21830 YPD4_RS21835 YPD4_pCD0066 YPD4_RS21835 67017 67415 - AAA family ATPase gene gene4352 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21835 YPD4_RS21840 YPD4_RS21840 YPD4_RS21840 67415 68587 - integrase gene gene4267 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21840 YPD4_RS21845 YPD4_pMT0001 YPD4_RS21845 87 1109 + transposase gene gene4353 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21845 YPD4_RS21850 YPD4_pMT0002 YPD4_RS21850 1109 1888 + transposase gene gene4354 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21850 YPD4_RS21855 YPD4_pMT0003 YPD4_RS21855 2022 2630 - tail assembly protein gene gene4355 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21855 YPD4_RS21860 YPD4_RS21860 YPD4_RS21860 2723 2935 - hypothetical protein gene gene4356 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21860 YPD4_RS21865 YPD4_pMT0004 YPD4_RS21865 2932 5820 - phage tail protein gene gene4357 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21865 YPD4_RS21870 YPD4_pMT0005 YPD4_RS21870 5901 6533 - hypothetical protein gene gene4358 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21870 YPD4_RS21875 YPD4_pMT0006 YPD4_RS21875 6536 11167 - host specificity protein J gene gene4359 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21875 YPD4_RS21880 YPD4_pMT0007 YPD4_RS21880 11189 11776 - phage tail protein gene gene4360 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21880 YPD4_RS21885 YPD4_pMT0008 YPD4_RS21885 11764 12561 - tail protein gene gene4361 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21885 YPD4_RS21890 YPD4_pMT0009 YPD4_RS21890 12554 13252 - tail protein gene gene4362 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21890 YPD4_RS21895 YPD4_pMT0010 YPD4_RS21895 13342 13677 - tail protein gene gene4363 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21895 YPD4_RS21900 YPD4_pMT0011 YPD4_RS21900 13719 18296 - phage tail tape measure protein gene gene4364 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21900 YPD4_RS21905 YPD4_RS21905 YPD4_RS21905 18304 18537 - hypothetical protein gene gene4365 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21905 YPD4_RS21915 YPD4_pMT0012 YPD4_RS21915 18654 18971 - hypothetical protein gene gene4366 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21915 YPD4_RS21920 YPD4_pMT0013 YPD4_RS21920 19031 19777 - hypothetical protein gene gene4367 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21920 YPD4_RS21925 YPD4_pMT0014 YPD4_RS21925 19852 20235 - hypothetical protein gene gene4368 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21925 YPD4_RS21930 YPD4_pMT0015 YPD4_RS21930 20237 20710 - hypothetical protein gene gene4369 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21930 YPD4_RS21935 YPD4_pMT0016 YPD4_RS21935 20701 21045 - hypothetical protein gene gene4370 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21935 YPD4_RS21940 YPD4_pMT0017 YPD4_RS21940 21143 21976 - hypothetical protein gene gene4371 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21940 YPD4_RS21945 YPD4_pMT0018 YPD4_RS21945 21976 22410 - hypothetical protein gene gene4372 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21945 YPD4_RS21950 YPD4_pMT0019 YPD4_RS21950 22454 23116 - hypothetical protein gene gene4373 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21950 YPD4_RS21955 YPD4_pMT0020 YPD4_RS21955 23191 24066 - phage capsid protein gene gene4374 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21955 YPD4_RS21960 YPD4_pMT0021 YPD4_RS21960 24093 24926 - hypothetical protein gene gene4375 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21960 YPD4_RS21965 YPD4_pMT0022 YPD4_RS21965 24949 26523 - hypothetical protein gene gene4376 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21965 YPD4_RS21970 YPD4_pMT0023 YPD4_RS21970 26557 27813 - terminase gene gene4377 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21970 YPD4_RS21975 YPD4_pMT0024 YPD4_RS21975 27816 28457 - DNA-binding protein gene gene4378 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21975 YPD4_RS21980 YPD4_RS21980 YPD4_RS21980 28653 28919 - hypothetical protein gene gene4379 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21980 YPD4_RS21985 YPD4_pMT0025 YPD4_RS21985 28929 29819 - hypothetical protein gene gene4380 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21985 YPD4_RS21990 YPD4_RS21990 YPD4_RS21990 29825 30079 - hypothetical protein gene gene4381 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21990 YPD4_RS21995 YPD4_pMT0026 YPD4_RS21995 30072 30710 - ABC transporter gene gene4382 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS21995 YPD4_RS22000 YPD4_pMT0027 YPD4_RS22000 30707 31375 - chromosome partitioning protein ParB gene gene4383 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22000 YPD4_RS22005 YPD4_pMT0028 YPD4_RS22005 31375 32073 - chromosome partitioning protein ParB gene gene4384 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22005 YPD4_RS22010 YPD4_pMT0029 YPD4_RS22010 32138 33697 + helicase gene gene4385 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22010 YPD4_RS22015 YPD4_RS22015 YPD4_RS22015 33700 33978 + hypothetical protein gene gene4386 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22015 YPD4_RS22020 YPD4_pMT0030 YPD4_RS22020 34038 34460 + hypothetical protein gene gene4387 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22020 YPD4_RS22025 YPD4_pMT0031 YPD4_RS22025 34465 34992 + transcriptional regulator gene gene4388 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22025 YPD4_RS22030 YPD4_pMT0032 YPD4_RS22030 35315 35965 + hypothetical protein gene gene4389 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22030 YPD4_RS22035 YPD4_RS22035 YPD4_RS22035 36050 36277 + hypothetical protein gene gene4390 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22035 YPD4_RS22040 YPD4_RS22040 YPD4_RS22040 36578 36937 + hypothetical protein gene gene4391 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22040 YPD4_RS22045 YPD4_pMT0033 YPD4_RS22045 36916 37398 - hypothetical protein gene gene4392 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22045 YPD4_RS22050 YPD4_RS22050 YPD4_RS22050 37411 37587 - hypothetical protein gene gene4393 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22050 YPD4_RS22055 YPD4_RS22055 YPD4_RS22055 37604 37885 - ABC transporter gene gene4394 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22055 YPD4_RS22060 YPD4_pMT0034 YPD4_RS22060 38085 38543 - transposase gene gene4395 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22060 YPD4_RS22065 YPD4_pMT0035 YPD4_RS22065 38752 39321 - hypothetical protein gene gene4397 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22065 YPD4_RS22070 YPD4_pMT0036 YPD4_RS22070 39334 40080 - hypothetical protein gene gene4398 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22070 YPD4_RS22075 YPD4_pMT0037 YPD4_RS22075 40070 41986 - exonuclease gene gene4399 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22075 YPD4_RS22080 YPD4_RS22080 YPD4_RS22080 41995 42219 - hypothetical protein gene gene4400 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22080 YPD4_RS22085 YPD4_pMT0038 YPD4_RS22085 42216 43301 - exonuclease gene gene4401 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22085 YPD4_RS22090 YPD4_RS22090 YPD4_RS22090 43450 43638 + membrane protein gene gene4402 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22090 YPD4_RS22095 YPD4_pMT0039 YPD4_RS22095 43717 44739 + hypothetical protein gene gene4403 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22095 YPD4_RS22100 YPD4_RS22100 YPD4_RS22100 44877 45023 - hypothetical protein gene gene4404 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22100 YPD4_RS22105 YPD4_pMT0040 YPD4_RS22105 45099 45743 - hypothetical protein gene gene4405 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22105 YPD4_RS22110 YPD4_pMT0041 YPD4_RS22110 46488 47552 + replication protein RepA gene gene4406 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22110 YPD4_RS22115 YPD4_RS22115 YPD4_RS22115 48121 48333 - hypothetical protein gene gene4407 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22115 YPD4_RS22120 YPD4_pMT0042 YPD4_RS22120 48333 48668 - hypothetical protein gene gene4408 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22120 YPD4_RS22125 YPD4_RS22125 YPD4_RS22125 48665 48844 - membrane protein gene gene4409 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22125 YPD4_RS22130 YPD4_RS22130 YPD4_RS22130 48885 49160 - hypothetical protein gene gene4410 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22130 YPD4_RS22135 YPD4_pMT0043 YPD4_RS22135 49228 49638 - hypothetical protein gene gene4411 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22135 YPD4_RS22140 YPD4_pMT0044 YPD4_RS22140 49622 49993 - hypothetical protein gene gene4412 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22140 YPD4_RS22145 YPD4_pMT0045 YPD4_RS22145 50147 50977 - hypothetical protein gene gene4413 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22145 YPD4_RS22150 YPD4_RS22150 YPD4_RS22150 50981 51181 - membrane protein gene gene4414 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22150 YPD4_RS22155 YPD4_pMT0046 YPD4_RS22155 51272 52348 - recombinase gene gene4415 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22155 YPD4_RS22160 YPD4_RS22160 YPD4_RS22160 52351 52617 - hypothetical protein gene gene4416 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22160 YPD4_RS22165 YPD4_pMT0047 YPD4_RS22165 52617 53546 - exonuclease gene gene4417 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22165 YPD4_RS22170 YPD4_pMT0048 YPD4_RS22170 53620 54648 - regulator gene gene4418 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22170 YPD4_RS22175 YPD4_pMT0049 YPD4_RS22175 54768 55199 - hypothetical protein gene gene4419 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22175 YPD4_RS22180 YPD4_RS22180 YPD4_RS22180 55420 55671 + hypothetical protein gene gene4420 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22180 YPD4_RS22185 YPD4_pMT0050 YPD4_RS22185 55744 56307 + DNA-binding protein gene gene4421 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22185 YPD4_RS22190 YPD4_pMT0051 YPD4_RS22190 56337 56780 - hypothetical protein gene gene4422 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22190 YPD4_RS22195 YPD4_pMT0052 YPD4_RS22195 56777 60301 - DNA polymerase III subunit alpha gene gene4423 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22195 YPD4_RS22200 YPD4_pMT0053 YPD4_RS22200 60482 61717 - porphyrin biosynthesis protein gene gene4424 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22200 YPD4_RS22205 YPD4_pMT0054 YPD4_RS22205 61814 64180 - porphyrin biosynthesis protein gene gene4425 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22205 YPD4_RS22210 YPD4_RS22210 YPD4_RS22210 64290 64502 - hypothetical protein gene gene4426 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22210 YPD4_RS22215 YPD4_pMT0055 YPD4_RS22215 64765 65151 + hypothetical protein gene gene4427 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22215 YPD4_RS22220 YPD4_pMT0056 YPD4_RS22220 65146 66249 - integrase gene gene4428 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22220 YPD4_RS22225 YPD4_pMT0057 YPD4_RS22225 67009 67521 - F1 capsule antigen gene gene4429 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22225 YPD4_RS22230 YPD4_pMT0058 YPD4_RS22230 67602 70103 - F1 capsule-anchoring protein gene gene4430 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22230 YPD4_RS22235 YPD4_pMT0059 YPD4_RS22235 70128 70904 - chaperone protein caf1M gene gene4431 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22235 YPD4_RS22240 YPD4_pMT0060 YPD4_RS22240 71232 72137 + F1 operon positive regulatory protein gene gene4432 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22240 YPD4_RS22245 YPD4_pMT0061 YPD4_RS22245 72486 73694 + transposase gene gene4433 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22245 YPD4_RS22250 YPD4_RS22250 YPD4_RS22250 73824 74003 + DNA helicase gene gene4434 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22250 YPD4_RS22255 YPD4_pMT0062 YPD4_RS22255 74163 75185 + transposase gene gene4435 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22255 YPD4_RS22260 YPD4_pMT0063 YPD4_RS22260 75384 75701 - transposase gene gene4436 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22260 YPD4_RS22265 YPD4_RS22265 YPD4_RS22265 75881 76252 - hypothetical protein gene gene4437 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22265 YPD4_RS22270 YPD4_RS22270 YPD4_RS22270 76167 76475 - hypothetical protein gene gene4438 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22270 YPD4_RS22275 YPD4_pMT0064 YPD4_RS22275 76561 77016 + reverse transcriptase gene gene4439 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22275 YPD4_RS22280 YPD4_pMT0065 YPD4_RS22280 77261 79024 - phospholipase D gene gene4440 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22280 YPD4_RS22285 YPD4_pMT0066 YPD4_RS22285 79102 79590 - phospholipase D gene gene4441 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22285 YPD4_RS22290 YPD4_RS22290 YPD4_RS22290 80329 80604 + hypothetical protein gene gene4442 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22290 YPD4_RS22295 YPD4_pMT0067 YPD4_RS22295 80627 81568 - hypothetical protein gene gene4443 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22295 YPD4_RS22300 YPD4_pMT0068 YPD4_RS22300 81634 82254 - serine recombinase gene gene4444 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22300 YPD4_RS22305 YPD4_RS22305 YPD4_RS22305 82454 82780 - plasmid stabilization protein gene gene4445 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22305 YPD4_RS22310 YPD4_RS22310 YPD4_RS22310 82780 83007 - prevent-host-death protein gene gene4446 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22310 YPD4_RS22315 YPD4_pMT0069 YPD4_RS22315 83309 84514 + chromosome partitioning protein ParA gene gene4447 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22315 YPD4_RS22320 YPD4_pMT0070 YPD4_RS22320 84511 85482 + chromosome partitioning protein ParB gene gene4448 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22320 YPD4_RS22325 YPD4_pMT0071 YPD4_RS22325 85861 87258 + DNA-binding protein gene gene4449 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22325 YPD4_RS22330 YPD4_RS22330 YPD4_RS22330 87420 87620 - hypothetical protein gene gene4450 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22330 YPD4_RS22335 YPD4_pMT0072 YPD4_RS22335 88121 88798 + methylase gene gene4451 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22335 YPD4_RS22340 YPD4_RS22340 YPD4_RS22340 88798 89019 + hypothetical protein gene gene4452 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22340 YPD4_RS22345 YPD4_pMT0073 YPD4_RS22345 89030 89449 + hypothetical protein gene gene4453 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22345 YPD4_RS22350 YPD4_RS22350 YPD4_RS22350 89503 90282 + hypothetical protein gene gene4454 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22350 YPD4_RS22355 YPD4_pMT0075 YPD4_RS22355 90681 91187 + antirestriction protein gene gene4455 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22355 YPD4_RS22360 YPD4_RS22360 YPD4_RS22360 91900 92130 + hypothetical protein gene gene4456 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22360 YPD4_RS22365 YPD4_pMT0076 YPD4_RS22365 92203 94212 + hypothetical protein gene gene4457 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22365 YPD4_RS22375 YPD4_pPCP0001 YPD4_RS22375 87 1109 + transposase gene gene4458 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22375 YPD4_RS22380 YPD4_pPCP0002 YPD4_RS22380 1109 1888 + transposase gene gene4459 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22380 YPD4_RS22385 YPD4_RS22385 YPD4_RS22385 2925 3119 + rop protein gene gene4460 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22385 YPD4_RS22390 YPD4_pPCP0004 YPD4_RS22390 4355 4781 + pesticin immunity protein gene gene4461 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22390 YPD4_RS22395 YPD4_pPCP0005 YPD4_RS22395 4816 5889 - peptidase gene gene4462 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22395 YPD4_RS22400 YPD4_RS22400 YPD4_RS22400 6118 6423 + hypothetical protein gene gene4463 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22400 YPD4_RS22405 YPD4_pPCP0007 YPD4_RS22405 6666 7604 + coagulase/fibrinolysin gene gene4464 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22405 YPD4_RS22410 YPD4_pPCP0008 YPD4_RS22410 7791 8090 - transcriptional regulator gene gene4465 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22410 YPD4_RS22415 YPD4_pPCP0009 YPD4_RS22415 8090 8431 - toxin RelE gene gene4466 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22415 YPD4_RS22420 YPD4_RS22420 YPD4_RS22420 9134 9349 - hypothetical protein gene gene4467 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22420 YPD4_RS22425 YPD4_RS22425 YPD4_RS22425 17553 17783 + hypothetical protein gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22425 YPD4_RS22430 YPD4_RS22430 YPD4_RS22430 433285 433482 + membrane protein gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22430 YPD4_RS22435 YPD4_RS22435 YPD4_RS22435 1330831 1331067 + hypothetical protein gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22435 YPD4_RS22440 YPD4_RS22440 YPD4_RS22440 4167581 4167811 - hypothetical protein gene gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22440 YPD4_RS22445 YPD4_RS22445 YPD4_RS22445 4370826 4371036 + hypothetical protein gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22445 YPD4_RS22450 YPD4_RS22450 YPD4_RS22450 4069448 4069826 + bacterial RNase P ncRNA gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22450 YPD4_RS22455 YPD4_RS22455 YPD4_RS22455 38553 38676 - Hfq binding sRNA ncRNA gene4396 http://www.ncbi.nlm.nih.gov/gene/?term=YPD4_RS22455