locus-tag	class	description
CH55_RS00305	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CH55_RS00560	COG1609	Transcriptional regulator
CH55_RS00585	COG0129	dihydroxy-acid dehydratase activity
CH55_RS00640	COG2067	long-chain fatty acid transport protein
CH55_RS00835	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CH55_RS00845	COG0163	prenyltransferase activity
CH55_RS00855	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CH55_RS00975	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CH55_RS01070	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CH55_RS01075	COG3088	subunit of a heme lyase
CH55_RS01075	COG4235	cytochrome complex assembly
CH55_RS01080	COG3088	subunit of a heme lyase
CH55_RS01080	COG4235	cytochrome complex assembly
CH55_RS01095	COG3691	Protein conserved in bacteria
CH55_RS01110	COG2062	phosphohistidine phosphatase, SixA
CH55_RS01125	COG2890	protein-(glutamine-N5) methyltransferase activity
CH55_RS01140	COG0730	response to heat
CH55_RS01145	COG3101	peptidyl-lysine hydroxylation
CH55_RS01160	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CH55_RS01165	COG1794	racemase activity, acting on amino acids and derivatives
CH55_RS01180	COG0697	spore germination
CH55_RS01200	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CH55_RS01210	COG0586	Pfam SNARE associated Golgi protein
CH55_RS01220	COG0285	dihydrofolate synthase activity
CH55_RS01225	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
CH55_RS01230	COG1286	toxin biosynthetic process
CH55_RS01235	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CH55_RS01245	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CH55_RS01250	COG4215	(ABC) transporter
CH55_RS01255	COG4160	amino acid transport
CH55_RS01260	COG4598	ABC transporter
CH55_RS01265	COG1090	epimerase
CH55_RS01275	COG0622	Phosphoesterase
CH55_RS01280	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
CH55_RS01285	COG3037	sugar-specific permease SgaT UlaA
CH55_RS01290	COG3328	transposase activity
CH55_RS01305	COG1609	Transcriptional regulator
CH55_RS01310	COG0857	belongs to the CobB CobQ family
CH55_RS01310	COG0280	phosphate acetyltransferase
CH55_RS01335	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CH55_RS01340	COG0490	domain, Protein
CH55_RS01340	COG0471	metal ion transport
CH55_RS01355	COG0436	Aminotransferase
CH55_RS01365	COG0583	DNA-binding transcription factor activity
CH55_RS01375	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CH55_RS01395	COG1034	ATP synthesis coupled electron transport
CH55_RS01410	COG0839	Belongs to the complex I subunit 6 family
CH55_RS01420	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CH55_RS01425	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CH55_RS01440	COG2731	YhcH YjgK YiaL family protein
CH55_RS01445	COG3265	gluconokinase activity
CH55_RS01450	COG1028	Short-chain dehydrogenase reductase Sdr
CH55_RS01455	COG1649	PFAM Uncharacterised BCR, COG1649
CH55_RS01460	COG1609	Transcriptional regulator
CH55_RS01470	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CH55_RS01485	COG0129	dihydroxy-acid dehydratase activity
CH55_RS01500	COG4575	ribosome binding
CH55_RS01510	COG1169	isochorismate synthase
CH55_RS01525	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CH55_RS01540	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CH55_RS01575	COG1126	abc transporter atp-binding protein
CH55_RS01580	COG0765	amino acid transport
CH55_RS01585	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CH55_RS01615	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CH55_RS01635	COG1063	alcohol dehydrogenase
CH55_RS01640	COG1879	ABC-type sugar transport system periplasmic component
CH55_RS01645	COG1129	ABC transporter
CH55_RS01650	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS01655	COG1609	Transcriptional regulator
CH55_RS01660	COG0583	DNA-binding transcription factor activity
CH55_RS01665	COG0473	3-isopropylmalate dehydrogenase activity
CH55_RS01675	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CH55_RS01685	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CH55_RS01690	COG2831	hemolysin activation secretion protein
CH55_RS01715	COG3210	domain, Protein
CH55_RS01735	COG3210	domain, Protein
CH55_RS01745	COG3842	ATPase activity
CH55_RS01755	COG1609	Transcriptional regulator
CH55_RS01770	COG0395	ABC-type sugar transport system, permease component
CH55_RS01775	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
CH55_RS01795	COG0668	transmembrane transport
CH55_RS01800	COG1518	maintenance of DNA repeat elements
CH55_RS01805	COG1203	CRISPR-associated helicase, Cas3
CH55_RS01840	COG0477	Major facilitator Superfamily
CH55_RS01850	COG0583	DNA-binding transcription factor activity
CH55_RS01855	COG2771	luxR family
CH55_RS01860	COG3916	Acyl-homoserine-lactone synthase
CH55_RS01890	COG0628	permease
CH55_RS01905	COG3328	transposase activity
CH55_RS01930	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CH55_RS01935	COG3328	transposase activity
CH55_RS01940	COG1530	ribonuclease E activity
CH55_RS01945	COG0564	pseudouridine synthase activity
CH55_RS01950	COG0424	maF-like protein
CH55_RS01955	COG1399	metal-binding, possibly nucleic acid-binding protein
CH55_RS01960	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CH55_RS01990	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CH55_RS02000	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CH55_RS02005	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CH55_RS02015	COG0470	DNA polymerase III
CH55_RS02020	COG0084	hydrolase, TatD family'
CH55_RS02025	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CH55_RS02025	COG1263	PTS System
CH55_RS02040	COG0537	adenosine 5'-monophosphoramidase activity
CH55_RS02045	COG5633	Lipoprotein
CH55_RS02060	COG1472	Belongs to the glycosyl hydrolase 3 family
CH55_RS02070	COG1252	NADH dehydrogenase
CH55_RS02090	COG3134	Outer membrane lipoprotein
CH55_RS02095	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CH55_RS02100	COG4591	ABC-type transport system involved in lipoprotein release permease component
CH55_RS02110	COG4591	ABC-type transport system involved in lipoprotein release permease component
CH55_RS02115	COG1940	carbohydrate kinase activity
CH55_RS02130	COG2850	peptidyl-arginine hydroxylation
CH55_RS02140	COG0745	RESPONSE REGULATOR receiver
CH55_RS02150	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CH55_RS02170	COG1187	pseudouridine synthase activity
CH55_RS02175	COG0538	isocitrate dehydrogenase activity
CH55_RS02190	COG0840	transmembrane signaling receptor activity
CH55_RS02195	COG0702	epimerase
CH55_RS02200	COG1733	regulation of RNA biosynthetic process
CH55_RS02225	COG1522	sequence-specific DNA binding
CH55_RS02235	COG1028	Short-chain dehydrogenase reductase Sdr
CH55_RS02235	COG0604	alcohol dehydrogenase
CH55_RS02235	COG3321	synthase
CH55_RS02265	COG1285	pathogenesis
CH55_RS02290	COG1360	Flagellar Motor Protein
CH55_RS02295	COG0643	Histidine kinase
CH55_RS02295	COG2198	Histidine kinase
CH55_RS02300	COG0835	chemotaxis
CH55_RS02305	COG2271	Major facilitator Superfamily
CH55_RS02310	COG0251	oxidation-reduction process
CH55_RS02320	COG2964	Protein conserved in bacteria
CH55_RS02340	COG0840	transmembrane signaling receptor activity
CH55_RS02345	COG0840	transmembrane signaling receptor activity
CH55_RS02350	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CH55_RS02360	COG0745	RESPONSE REGULATOR receiver
CH55_RS02365	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
CH55_RS02375	COG3023	N-Acetylmuramoyl-L-alanine amidase
CH55_RS02385	COG5295	Hep Hag repeat protein
CH55_RS02395	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CH55_RS02435	COG1454	alcohol dehydrogenase
CH55_RS02435	COG1012	belongs to the aldehyde dehydrogenase family
CH55_RS02440	COG2095	MarC family integral membrane protein
CH55_RS02450	COG0601	transmembrane transport
CH55_RS02455	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CH55_RS02460	COG0444	Belongs to the ABC transporter superfamily
CH55_RS02465	COG4608	Belongs to the ABC transporter superfamily
CH55_RS02505	COG2350	Protein conserved in bacteria
CH55_RS02510	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
CH55_RS02515	COG3328	transposase activity
CH55_RS02550	COG3047	cAMP biosynthetic process
CH55_RS02570	COG0134	indole-3-glycerol-phosphate synthase activity
CH55_RS02570	COG0135	phosphoribosylanthranilate isomerase activity
CH55_RS02580	COG0512	Glutamine amidotransferase of anthranilate synthase
CH55_RS02605	COG0009	L-threonylcarbamoyladenylate synthase
CH55_RS02610	COG1187	pseudouridine synthase activity
CH55_RS02620	COG1028	Short-chain dehydrogenase reductase Sdr
CH55_RS02625	COG0616	signal peptide processing
CH55_RS02645	COG0583	DNA-binding transcription factor activity
CH55_RS02655	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CH55_RS02665	COG0671	phosphoesterase, PA-phosphatase related
CH55_RS02670	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
CH55_RS02675	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CH55_RS02690	COG0023	Translation Initiation Factor
CH55_RS02710	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CH55_RS02715	COG2879	small protein
CH55_RS02720	COG1966	Carbon starvation protein
CH55_RS02730	COG2271	Major facilitator Superfamily
CH55_RS02735	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CH55_RS02740	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CH55_RS02750	COG4659	FMN binding
CH55_RS02755	COG4658	electron transport chain
CH55_RS02760	COG3708	Transcriptional regulator
CH55_RS02760	COG2207	Transcriptional regulator
CH55_RS02790	COG1132	(ABC) transporter
CH55_RS02800	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CH55_RS02805	COG2274	protein secretion by the type I secretion system
CH55_RS02820	COG1879	ABC-type sugar transport system periplasmic component
CH55_RS02825	COG1129	ABC transporter
CH55_RS02830	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS02840	COG0673	inositol 2-dehydrogenase activity
CH55_RS02845	COG0385	Bile acid
CH55_RS02855	COG5339	Protein conserved in bacteria
CH55_RS02865	COG0114	fumarate hydratase activity
CH55_RS02880	COG0583	DNA-binding transcription factor activity
CH55_RS02885	COG1940	carbohydrate kinase activity
CH55_RS02890	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CH55_RS02895	COG0038	chloride channel
CH55_RS02905	COG1609	Transcriptional regulator
CH55_RS02925	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CH55_RS02935	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CH55_RS02960	COG0028	Belongs to the TPP enzyme family
CH55_RS02965	COG0440	acetolactate synthase activity
CH55_RS02970	COG1011	Hydrolase
CH55_RS02990	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CH55_RS02995	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CH55_RS03000	COG0589	response to stress
CH55_RS03005	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CH55_RS03010	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CH55_RS03025	COG0531	amino acid
CH55_RS03035	COG0745	RESPONSE REGULATOR receiver
CH55_RS03040	COG2205	protein histidine kinase activity
CH55_RS03045	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
CH55_RS03090	COG3591	Belongs to the peptidase S1B family
CH55_RS03105	COG1643	Atp-dependent helicase
CH55_RS03115	COG2390	Transcriptional regulator
CH55_RS03120	COG0246	Mannitol dehydrogenase
CH55_RS03125	COG3784	Protein of unknown function (DUF1318)
CH55_RS03135	COG2911	Protein conserved in bacteria
CH55_RS03140	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CH55_RS03145	COG3187	Heat shock protein
CH55_RS03155	COG1285	pathogenesis
CH55_RS03165	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CH55_RS03165	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CH55_RS03165	COG1013	pyruvate-flavodoxin oxidoreductase activity
CH55_RS03165	COG0674	pyruvate-flavodoxin oxidoreductase activity
CH55_RS03175	COG0657	acetylesterase activity
CH55_RS03190	COG4166	transmembrane transport
CH55_RS03195	COG2866	Carboxypeptidase
CH55_RS03200	COG4948	Mandelate Racemase Muconate Lactonizing
CH55_RS03205	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CH55_RS03220	COG5642	Protein of unknown function (DUF2384)
CH55_RS03225	COG5654	RES domain protein
CH55_RS03235	COG3106	COG3106 Predicted ATPase
CH55_RS03245	COG1983	PspC domain protein
CH55_RS03255	COG1842	Phage shock protein A
CH55_RS03260	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CH55_RS03280	COG4166	transmembrane transport
CH55_RS03285	COG4168	peptide transport system, permease
CH55_RS03290	COG4171	peptide transport system, permease
CH55_RS03300	COG4172	Belongs to the ABC transporter superfamily
CH55_RS03305	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CH55_RS03305	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CH55_RS03310	COG3104	oligopeptide transport
CH55_RS03325	COG0625	glutathione transferase activity
CH55_RS03345	COG3895	Periplasmic Protein
CH55_RS03355	COG3133	Outer membrane lipoprotein
CH55_RS03365	COG2194	sulfuric ester hydrolase activity
CH55_RS03370	COG1309	transcriptional regulator
CH55_RS03375	COG1902	pentaerythritol trinitrate reductase activity
CH55_RS03385	COG0346	lactoylglutathione lyase activity
CH55_RS03390	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CH55_RS03395	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CH55_RS03405	COG0791	NLP P60 protein
CH55_RS03415	COG0583	DNA-binding transcription factor activity
CH55_RS03420	COG2814	Major facilitator Superfamily
CH55_RS03425	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CH55_RS03430	COG0307	riboflavin synthase, alpha
CH55_RS03485	COG1376	ErfK ybiS ycfS ynhG family protein
CH55_RS03485	COG1388	LysM domain
CH55_RS03500	COG0719	Fe-S assembly protein
CH55_RS03505	COG0396	ATPase activity
CH55_RS03510	COG0719	Fe-S assembly protein
CH55_RS03515	COG0316	Belongs to the HesB IscA family
CH55_RS03525	COG2050	protein possibly involved in aromatic compounds catabolism
CH55_RS03530	COG0247	lactate metabolic process
CH55_RS03530	COG0277	FAD linked oxidase domain protein
CH55_RS03535	COG0628	permease
CH55_RS03565	COG0791	NLP P60 protein
CH55_RS03610	COG0386	Belongs to the glutathione peroxidase family
CH55_RS03625	COG0776	regulation of translation
CH55_RS03630	COG0072	phenylalanine-tRNA ligase activity
CH55_RS03630	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CH55_RS03660	COG4249	Peptidase C14 caspase catalytic subunit p20
CH55_RS03685	COG0803	Belongs to the bacterial solute-binding protein 9 family
CH55_RS03690	COG1121	(ABC) transporter
CH55_RS03695	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CH55_RS03700	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CH55_RS03710	COG3001	Fructosamine kinase
CH55_RS03720	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CH55_RS03725	COG3328	transposase activity
CH55_RS03730	COG1917	Cupin 2, conserved barrel domain protein
CH55_RS03740	COG1028	Short-chain dehydrogenase reductase Sdr
CH55_RS03750	COG1175	transmembrane transport
CH55_RS03755	COG0395	ABC-type sugar transport system, permease component
CH55_RS03760	COG3842	ATPase activity
CH55_RS03765	COG1653	transport
CH55_RS03770	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CH55_RS03775	COG1988	membrane-bound metal-dependent
CH55_RS03780	COG1823	symporter activity
CH55_RS03785	COG3023	N-Acetylmuramoyl-L-alanine amidase
CH55_RS03795	COG0823	Involved in the tonB-independent uptake of proteins
CH55_RS03800	COG2814	Major facilitator Superfamily
CH55_RS03805	COG3121	Chaperone
CH55_RS03820	COG3121	Chaperone
CH55_RS03825	COG3539	Fimbrial protein
CH55_RS03835	COG0793	Belongs to the peptidase S41A family
CH55_RS03845	COG1956	GAF domain-containing protein
CH55_RS03850	COG2995	paraquat-inducible protein a
CH55_RS03875	COG3121	Chaperone
CH55_RS03925	COG0745	RESPONSE REGULATOR receiver
CH55_RS03935	COG0788	formyltetrahydrofolate deformylase activity
CH55_RS03940	COG3328	transposase activity
CH55_RS03950	COG0583	DNA-binding transcription factor activity
CH55_RS03955	COG0708	Exodeoxyribonuclease III
CH55_RS03960	COG0494	nUDIX hydrolase
CH55_RS03970	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CH55_RS03975	COG0709	Synthesizes selenophosphate from selenide and ATP
CH55_RS03980	COG0778	Nitroreductase
CH55_RS03985	COG0616	signal peptide processing
CH55_RS03990	COG0252	asparaginase activity
CH55_RS03995	COG1335	isochorismatase
CH55_RS04000	COG3139	Protein of unknown function (DUF1315)
CH55_RS04020	COG3713	MltA-interacting MipA family protein
CH55_RS04025	COG2766	serine protein kinase
CH55_RS04040	COG0583	DNA-binding transcription factor activity
CH55_RS04050	COG2814	Major facilitator Superfamily
CH55_RS04060	COG2719	SpoVR family
CH55_RS04090	COG1104	cysteine desulfurase activity
CH55_RS04100	COG3328	transposase activity
CH55_RS04265	COG3328	transposase activity
CH55_RS04375	COG0179	Fumarylacetoacetate (FAA) hydrolase
CH55_RS04380	COG2951	lytic endotransglycosylase activity
CH55_RS04395	COG2894	cell division
CH55_RS04400	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
CH55_RS04405	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
CH55_RS04410	COG0318	PFAM AMP-dependent synthetase and ligase
CH55_RS04415	COG3065	identical protein binding
CH55_RS04425	COG1199	ATP-dependent helicase activity
CH55_RS04430	COG0251	oxidation-reduction process
CH55_RS04445	COG0800	Aldolase
CH55_RS04455	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CH55_RS04460	COG1737	Transcriptional regulator
CH55_RS04465	COG0469	pyruvate kinase activity
CH55_RS04470	COG1560	Kdo2-lipid A biosynthetic process
CH55_RS04475	COG0739	heme binding
CH55_RS04480	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
CH55_RS04490	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CH55_RS04515	COG0494	nUDIX hydrolase
CH55_RS04525	COG1801	Protein of unknown function DUF72
CH55_RS04530	COG3788	relative of glutathione S-transferase, MAPEG superfamily
CH55_RS04550	COG3102	Protein conserved in bacteria
CH55_RS04570	COG0728	peptidoglycan biosynthetic process
CH55_RS04585	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CH55_RS04600	COG3381	protein complex oligomerization
CH55_RS04615	COG1940	carbohydrate kinase activity
CH55_RS04620	COG0584	glycerophosphoryl diester phosphodiesterase
CH55_RS04630	COG1176	ABC-type spermidine putrescine transport system, permease component I
CH55_RS04635	COG3833	ABC-type maltose transport systems, permease component
CH55_RS04660	COG0659	secondary active sulfate transmembrane transporter activity
CH55_RS04680	COG2890	protein-(glutamine-N5) methyltransferase activity
CH55_RS04710	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CH55_RS04730	COG0012	GTP binding
CH55_RS04785	COG5002	protein histidine kinase activity
CH55_RS04825	COG0500	methyltransferase
CH55_RS04895	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CH55_RS04900	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CH55_RS04905	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CH55_RS04920	COG0402	S-adenosylhomocysteine deaminase activity
CH55_RS04975	COG3842	ATPase activity
CH55_RS04980	COG0395	ABC-type sugar transport system, permease component
CH55_RS04985	COG1175	transmembrane transport
CH55_RS04995	COG0673	inositol 2-dehydrogenase activity
CH55_RS05005	COG2188	Transcriptional regulator
CH55_RS05145	COG2197	response regulator
CH55_RS05155	COG3136	membrane protein required for alginate biosynthesis
CH55_RS05180	COG1113	amino acid transport
CH55_RS05200	COG2822	iron ion transport
CH55_RS05205	COG0672	)-iron permease
CH55_RS05220	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CH55_RS05220	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CH55_RS05220	COG0506	proline dehydrogenase activity
CH55_RS05235	COG1126	abc transporter atp-binding protein
CH55_RS05240	COG0765	amino acid transport
CH55_RS05245	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CH55_RS05260	COG1191	sigma factor activity
CH55_RS05300	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CH55_RS05305	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CH55_RS05320	COG1677	Flagellar hook-basal body complex protein FliE
CH55_RS05340	COG1157	protein secretion by the type III secretion system
CH55_RS05355	COG1580	Controls the rotational direction of flagella during chemotaxis
CH55_RS05380	COG1987	bacterial-type flagellum assembly
CH55_RS05400	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CH55_RS05410	COG1129	ABC transporter
CH55_RS05420	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS05425	COG3347	Dehydrogenase
CH55_RS05425	COG1028	Short-chain dehydrogenase reductase Sdr
CH55_RS05430	COG2390	Transcriptional regulator
CH55_RS05440	COG1256	bacterial-type flagellum assembly
CH55_RS05480	COG1558	bacterial-type flagellum-dependent cell motility
CH55_RS05485	COG1815	bacterial-type flagellum-dependent cell motility
CH55_RS05495	COG2747	anti-sigma28 factor FlgM
CH55_RS05500	COG3418	PFAM FlgN family protein
CH55_RS05525	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CH55_RS05530	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CH55_RS05560	COG2372	response to copper ion
CH55_RS05565	COG1528	Iron-storage protein
CH55_RS05580	COG1770	oligopeptidase
CH55_RS05595	COG3141	response to X-ray
CH55_RS05600	COG0513	Belongs to the DEAD box helicase family
CH55_RS05625	COG1760	l-serine dehydratase
CH55_RS05630	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CH55_RS05635	COG2368	4-hydroxyphenylacetate
CH55_RS05650	COG3971	2-oxopent-4-enoate hydratase activity
CH55_RS05660	COG3384	dioxygenase
CH55_RS05665	COG1012	belongs to the aldehyde dehydrogenase family
CH55_RS05680	COG1846	Transcriptional regulator
CH55_RS05685	COG1253	flavin adenine dinucleotide binding
CH55_RS05690	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CH55_RS05690	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CH55_RS05695	COG3715	PTS system
CH55_RS05700	COG3716	PTS system mannose fructose sorbose family IID component
CH55_RS05730	COG2226	methyltransferase
CH55_RS05735	COG1496	oxidoreductase activity
CH55_RS05760	COG1113	amino acid transport
CH55_RS05795	COG2207	Transcriptional regulator
CH55_RS05805	COG1132	(ABC) transporter
CH55_RS05850	COG3328	transposase activity
CH55_RS05855	COG2223	nitrite transmembrane transporter activity
CH55_RS05875	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CH55_RS05900	COG3122	Protein conserved in bacteria
CH55_RS05920	COG0534	Mate efflux family protein
CH55_RS05935	COG4948	Mandelate Racemase Muconate Lactonizing
CH55_RS05945	COG1028	Short-chain dehydrogenase reductase Sdr
CH55_RS05950	COG3011	Protein conserved in bacteria
CH55_RS05955	COG2271	Major facilitator Superfamily
CH55_RS05960	COG1388	LysM domain
CH55_RS05960	COG1470	cell adhesion involved in biofilm formation
CH55_RS05965	COG3328	transposase activity
CH55_RS05980	COG2925	Exonuclease
CH55_RS05985	COG0531	amino acid
CH55_RS05995	COG0371	Dehydrogenase
CH55_RS06000	COG1129	ABC transporter
CH55_RS06005	COG1129	ABC transporter
CH55_RS06010	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS06020	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CH55_RS06030	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CH55_RS06040	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CH55_RS06040	COG0131	Imidazoleglycerol-phosphate dehydratase
CH55_RS06060	COG0140	phosphoribosyl-ATP diphosphatase activity
CH55_RS06060	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CH55_RS06070	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CH55_RS06075	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CH55_RS06090	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CH55_RS06095	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CH55_RS06100	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CH55_RS06105	COG1120	ATPase activity
CH55_RS06120	COG3486	L-lysine 6-monooxygenase (NADPH) activity
CH55_RS06125	COG0076	glutamate decarboxylase activity
CH55_RS06130	COG4114	ferric iron reductase
CH55_RS06135	COG1253	flavin adenine dinucleotide binding
CH55_RS06140	COG2982	Protein involved in outer membrane biogenesis
CH55_RS06155	COG0489	protein tyrosine kinase activity
CH55_RS06190	COG2814	Major facilitator Superfamily
CH55_RS06200	COG1346	cytolysis
CH55_RS06215	COG2949	membrane
CH55_RS06220	COG4211	Belongs to the binding-protein-dependent transport system permease family
CH55_RS06235	COG2311	Membrane
CH55_RS06245	COG0477	Major facilitator Superfamily
CH55_RS06250	COG0583	DNA-binding transcription factor activity
CH55_RS06285	COG1136	(ABC) transporter
CH55_RS06295	COG0303	'Molybdopterin
CH55_RS06315	COG0488	(ABC) transporter
CH55_RS06450	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CH55_RS06455	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CH55_RS06465	COG1028	Short-chain dehydrogenase reductase Sdr
CH55_RS06470	COG1024	Enoyl-CoA hydratase
CH55_RS06480	COG3425	synthase
CH55_RS06485	COG1028	Short-chain dehydrogenase reductase Sdr
CH55_RS06490	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CH55_RS06495	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CH55_RS06505	COG1028	Short-chain dehydrogenase reductase Sdr
CH55_RS06540	COG2920	part of a sulfur-relay system
CH55_RS06560	COG1832	CoA-binding protein
CH55_RS06575	COG0210	DNA helicase
CH55_RS06580	COG3304	Inner membrane component domain
CH55_RS06585	COG1289	transmembrane transporter activity
CH55_RS06590	COG3070	regulator of competence-specific genes
CH55_RS06620	COG1067	ATP-dependent peptidase activity
CH55_RS06635	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CH55_RS06655	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CH55_RS06670	COG3130	regulation of translation
CH55_RS06680	COG3009	Protein conserved in bacteria
CH55_RS06685	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CH55_RS06685	COG3008	intermembrane lipid transfer
CH55_RS06690	COG2995	paraquat-inducible protein a
CH55_RS06695	COG0488	(ABC) transporter
CH55_RS06705	COG0633	Ferredoxin
CH55_RS06705	COG3217	Mosc domain protein beta barrel domain protein
CH55_RS06720	COG0308	aminopeptidase N
CH55_RS06740	COG1448	Aminotransferase
CH55_RS06745	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CH55_RS06750	COG3108	Peptidase M15
CH55_RS06755	COG2989	Protein conserved in bacteria
CH55_RS06785	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CH55_RS06795	COG3173	Aminoglycoside phosphotransferase
CH55_RS06810	COG1278	Cold shock
CH55_RS06815	COG5383	Protein conserved in bacteria
CH55_RS06840	COG0539	negative regulation of cytoplasmic translation
CH55_RS06865	COG5295	Hep Hag repeat protein
CH55_RS06865	COG5295	Hep Hag repeat protein
CH55_RS06870	COG0252	asparaginase activity
CH55_RS06875	COG1944	ATP diphosphatase activity
CH55_RS06880	COG2116	formate transmembrane transporter activity
CH55_RS06885	COG1882	Formate acetyltransferase
CH55_RS06895	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CH55_RS06925	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CH55_RS06935	COG1674	ftsk spoiiie
CH55_RS06935	COG3107	peptidoglycan biosynthetic process
CH55_RS06945	COG0492	ferredoxin-NADP+ reductase activity
CH55_RS06960	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CH55_RS06970	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CH55_RS06980	COG0542	response to heat
CH55_RS06990	COG1278	Cold shock
CH55_RS07000	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CH55_RS07005	COG2990	Protein conserved in bacteria
CH55_RS07010	COG3593	DNA synthesis involved in DNA repair
CH55_RS07015	COG2431	L-lysine efflux transmembrane transporter activity
CH55_RS07025	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CH55_RS07030	COG0028	Belongs to the TPP enzyme family
CH55_RS07035	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
CH55_RS07040	COG0702	epimerase
CH55_RS07045	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CH55_RS07055	COG1605	Chorismate mutase
CH55_RS07060	COG1126	abc transporter atp-binding protein
CH55_RS07065	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CH55_RS07070	COG4215	(ABC) transporter
CH55_RS07075	COG4160	amino acid transport
CH55_RS07100	COG1120	ATPase activity
CH55_RS07130	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CH55_RS07145	COG1177	transmembrane transport
CH55_RS07150	COG1176	ABC-type spermidine putrescine transport system, permease component I
CH55_RS07155	COG3842	ATPase activity
CH55_RS07160	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CH55_RS07195	COG0671	phosphoesterase, PA-phosphatase related
CH55_RS07205	COG1349	DNA-binding transcription factor activity
CH55_RS07220	COG1686	Belongs to the peptidase S11 family
CH55_RS07225	COG2011	ABC-type metal ion transport system permease component
CH55_RS07250	COG0625	glutathione transferase activity
CH55_RS07255	COG4771	TonB-dependent receptor
CH55_RS07265	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CH55_RS07280	COG0583	DNA-binding transcription factor activity
CH55_RS07285	COG2855	membrane
CH55_RS07295	COG3188	usher protein
CH55_RS07300	COG3121	Chaperone
CH55_RS07315	COG3710	Transcriptional regulator
CH55_RS07320	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CH55_RS07320	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CH55_RS07320	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CH55_RS07325	COG1105	Belongs to the carbohydrate kinase PfkB family
CH55_RS07335	COG0494	nUDIX hydrolase
CH55_RS07345	COG1129	ABC transporter
CH55_RS07380	COG1028	Short-chain dehydrogenase reductase Sdr
CH55_RS07405	COG0246	Mannitol dehydrogenase
CH55_RS07410	COG2186	Transcriptional regulator
CH55_RS07420	COG0523	cobalamin synthesis protein
CH55_RS07425	COG0671	phosphoesterase, PA-phosphatase related
CH55_RS07430	COG0791	NLP P60 protein
CH55_RS07435	COG2200	EAL domain
CH55_RS07440	COG4166	transmembrane transport
CH55_RS07445	COG4174	ABC transporter (Permease)
CH55_RS07450	COG4239	(ABC) transporter, permease
CH55_RS07455	COG4172	Belongs to the ABC transporter superfamily
CH55_RS07465	COG2814	Major facilitator Superfamily
CH55_RS07470	COG1187	pseudouridine synthase activity
CH55_RS07475	COG1061	Type III restriction enzyme res subunit
CH55_RS07500	COG3082	Protein of unknown function (DUF1414)
CH55_RS07505	COG3083	sulfuric ester hydrolase activity
CH55_RS07520	COG3157	Type VI secretion system effector, Hcp
CH55_RS07540	COG2723	6-phospho-beta-galactosidase activity
CH55_RS07545	COG1737	Transcriptional regulator
CH55_RS07565	COG3299	homolog of phage Mu protein gp47
CH55_RS07605	COG4386	tail sheath protein
CH55_RS07625	COG3622	Belongs to the hyi family
CH55_RS07630	COG1349	DNA-binding transcription factor activity
CH55_RS07640	COG3395	kinase activity
CH55_RS07685	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CH55_RS07715	COG2223	nitrite transmembrane transporter activity
CH55_RS07720	COG0642	Histidine kinase
CH55_RS07720	COG2198	Histidine kinase
CH55_RS07725	COG2198	Histidine kinase
CH55_RS07725	COG0642	Histidine kinase
CH55_RS07735	COG0784	Response regulator, receiver
CH55_RS07735	COG2205	protein histidine kinase activity
CH55_RS07765	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CH55_RS07780	COG0814	amino acid
CH55_RS07795	COG1199	ATP-dependent helicase activity
CH55_RS07805	COG0697	spore germination
CH55_RS07815	COG1982	Orn Lys Arg decarboxylase major
CH55_RS07820	COG0531	amino acid
CH55_RS07825	COG1174	glycine betaine transport
CH55_RS07830	COG1125	glycine betaine transport
CH55_RS07835	COG1174	glycine betaine transport
CH55_RS07840	COG1732	Glycine betaine
CH55_RS07845	COG1732	Glycine betaine
CH55_RS07850	COG2897	thiosulfate sulfurtransferase activity
CH55_RS07870	COG1122	ATPase activity
CH55_RS07890	COG4807	Protein conserved in bacteria
CH55_RS07905	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
CH55_RS07915	COG2261	transglycosylase associated protein
CH55_RS07935	COG0277	FAD linked oxidase domain protein
CH55_RS07940	COG1686	Belongs to the peptidase S11 family
CH55_RS07950	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CH55_RS07970	COG0513	Belongs to the DEAD box helicase family
CH55_RS07980	COG3328	transposase activity
CH55_RS08035	COG0517	IMP dehydrogenase activity
CH55_RS08035	COG0516	GMP reductase activity
CH55_RS08045	COG1645	bacterial-type flagellum-dependent swarming motility
CH55_RS08060	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CH55_RS08065	COG2976	Protein conserved in bacteria
CH55_RS08115	COG3468	outer membrane autotransporter barrel domain protein
CH55_RS08135	COG2975	iron-sulfur cluster assembly
CH55_RS08140	COG0633	Ferredoxin
CH55_RS08145	COG0443	Heat shock 70 kDa protein
CH55_RS08160	COG0822	iron-sulfur transferase activity
CH55_RS08165	COG1104	cysteine desulfurase activity
CH55_RS08190	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
CH55_RS08195	COG3683	transport system, periplasmic component
CH55_RS08200	COG3711	transcriptional antiterminator
CH55_RS08205	COG2814	Major facilitator Superfamily
CH55_RS08225	COG1017	nitric oxide dioxygenase activity
CH55_RS08225	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CH55_RS08230	COG2188	Transcriptional regulator
CH55_RS08235	COG2188	Transcriptional regulator
CH55_RS08240	COG0347	Belongs to the P(II) protein family
CH55_RS08245	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CH55_RS08245	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CH55_RS08250	COG2204	response regulator
CH55_RS08255	COG3170	Tfp pilus assembly protein FimV
CH55_RS08260	COG2205	protein histidine kinase activity
CH55_RS08300	COG0560	Phosphoserine phosphatase
CH55_RS08310	COG1737	Transcriptional regulator
CH55_RS08315	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CH55_RS08335	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CH55_RS08370	COG3086	response to oxidative stress
CH55_RS08375	COG3026	antisigma factor binding
CH55_RS08390	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CH55_RS08400	COG0513	Belongs to the DEAD box helicase family
CH55_RS08450	COG1984	allophanate hydrolase subunit 2
CH55_RS08460	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CH55_RS08465	COG5212	phosphodiesterase
CH55_RS08475	COG3272	Protein of unknown function (DUF1722)
CH55_RS08510	COG2205	protein histidine kinase activity
CH55_RS08515	COG0745	RESPONSE REGULATOR receiver
CH55_RS08535	COG0033	Phosphoglucomutase
CH55_RS08540	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
CH55_RS08560	COG1917	Cupin 2, conserved barrel domain protein
CH55_RS08560	COG2169	Transcriptional regulator
CH55_RS08565	COG1447	Phosphotransferase system cellobiose-specific component IIA
CH55_RS08570	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CH55_RS08575	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CH55_RS08585	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CH55_RS08595	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CH55_RS08610	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
CH55_RS08615	COG4413	Urea transporter
CH55_RS08625	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CH55_RS08650	COG0831	urea catabolic process
CH55_RS08655	COG1124	(ABC) transporter
CH55_RS08660	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
CH55_RS08665	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CH55_RS08675	COG0747	negative chemotaxis
CH55_RS08680	COG1278	Cold shock
CH55_RS08720	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CH55_RS08725	COG4175	Glycine betaine
CH55_RS08730	COG4176	ABC-type proline glycine betaine transport system permease component
CH55_RS08735	COG2113	Glycine betaine
CH55_RS08760	COG0582	viral genome integration into host DNA
CH55_RS08765	COG2963	transposase activity
CH55_RS08770	COG0582	viral genome integration into host DNA
CH55_RS08780	COG0596	Alpha beta hydrolase
CH55_RS08800	COG0735	belongs to the Fur family
CH55_RS08825	COG2190	(PTS) system
CH55_RS08825	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CH55_RS08825	COG1263	PTS System
CH55_RS08835	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CH55_RS08840	COG1940	carbohydrate kinase activity
CH55_RS08840	COG1846	Transcriptional regulator
CH55_RS08845	COG0647	UMP catabolic process
CH55_RS08850	COG0367	asparagine synthase
CH55_RS08890	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CH55_RS08895	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CH55_RS08900	COG1702	phosphate starvation-inducible protein PhoH
CH55_RS08910	COG4535	Mg2 and Co2 transporter CorC
CH55_RS08915	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CH55_RS08925	COG0765	amino acid transport
CH55_RS08930	COG0765	amino acid transport
CH55_RS08935	COG1126	abc transporter atp-binding protein
CH55_RS08940	COG2888	peptidyl-tyrosine sulfation
CH55_RS08955	COG1466	dna polymerase III delta subunit
CH55_RS08965	COG0799	negative regulation of ribosome biogenesis
CH55_RS08975	COG0768	penicillin binding
CH55_RS08980	COG0772	Belongs to the SEDS family
CH55_RS08985	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CH55_RS09010	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CH55_RS09020	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CH55_RS09030	COG1278	Cold shock
CH55_RS09035	COG2197	response regulator
CH55_RS09060	COG5265	(ABC) transporter
CH55_RS09070	COG3718	enzyme involved in inositol metabolism
CH55_RS09080	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CH55_RS09085	COG0673	inositol 2-dehydrogenase activity
CH55_RS09090	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS09095	COG1129	ABC transporter
CH55_RS09110	COG3962	Belongs to the TPP enzyme family
CH55_RS09130	COG2373	Large extracellular alpha-helical protein
CH55_RS09145	COG4953	penicillin-binding protein 1C
CH55_RS09150	COG3423	Transcriptional regulator
CH55_RS09200	COG2850	peptidyl-arginine hydroxylation
CH55_RS09205	COG3328	transposase activity
CH55_RS09220	COG1472	Belongs to the glycosyl hydrolase 3 family
CH55_RS09240	COG0656	L-ascorbic acid biosynthetic process
CH55_RS09280	COG2453	phosphatase
CH55_RS09280	COG0671	phosphoesterase, PA-phosphatase related
CH55_RS09285	COG2267	carboxylic ester hydrolase activity
CH55_RS09295	COG4589	Belongs to the CDS family
CH55_RS09300	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CH55_RS09350	COG2501	S4 domain
CH55_RS09370	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CH55_RS09380	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CH55_RS09385	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CH55_RS09390	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CH55_RS09395	COG4181	ATPase activity
CH55_RS09400	COG2755	lipolytic protein G-D-S-L family
CH55_RS09405	COG0300	oxidoreductase activity
CH55_RS09410	COG3118	belongs to the thioredoxin family
CH55_RS09415	COG0330	HflC and HflK could
CH55_RS09420	COG1585	Membrane protein implicated in regulation of membrane protease activity
CH55_RS09425	COG0789	Transcriptional regulator
CH55_RS09430	COG2217	Heavy metal translocating P-type atpase
CH55_RS09435	COG3735	TraB family
CH55_RS09440	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CH55_RS09455	COG0737	Belongs to the 5'-nucleotidase family
CH55_RS09465	COG0737	Belongs to the 5'-nucleotidase family
CH55_RS09470	COG2223	nitrite transmembrane transporter activity
CH55_RS09475	COG4651	solute:proton antiporter activity
CH55_RS09475	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CH55_RS09480	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CH55_RS09485	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
CH55_RS09505	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CH55_RS09545	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CH55_RS09595	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CH55_RS09625	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
CH55_RS09630	COG1309	transcriptional regulator
CH55_RS09635	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CH55_RS09640	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CH55_RS09650	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CH55_RS09670	COG3695	enzyme binding
CH55_RS09675	COG3126	Type III secretion system lipoprotein chaperone (YscW)
CH55_RS09680	COG1946	Acyl-CoA thioesterase
CH55_RS09685	COG0004	ammonium transporteR
CH55_RS09690	COG0347	Belongs to the P(II) protein family
CH55_RS09695	COG1132	(ABC) transporter
CH55_RS09700	COG1132	(ABC) transporter
CH55_RS09705	COG1522	sequence-specific DNA binding
CH55_RS09720	COG4533	DNA binding
CH55_RS09730	COG0824	Thioesterase
CH55_RS09735	COG1555	photosystem II stabilization
CH55_RS09740	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CH55_RS09745	COG0776	regulation of translation
CH55_RS09750	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CH55_RS09775	COG0271	Belongs to the BolA IbaG family
CH55_RS09780	COG3056	Lipoprotein
CH55_RS09785	COG2223	nitrite transmembrane transporter activity
CH55_RS09795	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CH55_RS09800	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CH55_RS09805	COG1845	cytochrome c oxidase, subunit III
CH55_RS09810	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CH55_RS09820	COG2814	Major facilitator Superfamily
CH55_RS09830	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CH55_RS09835	COG0693	protein deglycase activity
CH55_RS09855	COG0142	geranyltranstransferase activity
CH55_RS09875	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CH55_RS09880	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CH55_RS09895	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CH55_RS09895	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CH55_RS09920	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CH55_RS09925	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CH55_RS09930	COG1862	Preprotein translocase
CH55_RS09950	COG0450	alkyl hydroperoxide reductase
CH55_RS09975	COG0366	Alpha amylase catalytic
CH55_RS09995	COG5002	protein histidine kinase activity
CH55_RS10000	COG0745	RESPONSE REGULATOR receiver
CH55_RS10010	COG0420	3'-5' exonuclease activity
CH55_RS10015	COG0419	ATPase involved in DNA repair
CH55_RS10020	COG1940	carbohydrate kinase activity
CH55_RS10065	COG2226	methyltransferase
CH55_RS10135	COG2195	Cleaves the N-terminal amino acid of tripeptides
CH55_RS10155	COG1477	protein flavinylation
CH55_RS10175	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
CH55_RS10180	COG1805	sodium ion transport
CH55_RS10190	COG3034	peptidoglycan biosynthetic process
CH55_RS10195	COG0121	glutamine amidotransferase
CH55_RS10205	COG1960	acyl-CoA dehydrogenase activity
CH55_RS10215	COG3914	O-linked N-acetylglucosamine transferase SPINDLY family
CH55_RS10235	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CH55_RS10245	COG0765	amino acid transport
CH55_RS10285	COG2814	Major facilitator Superfamily
CH55_RS10290	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CH55_RS10300	COG1846	Transcriptional regulator
CH55_RS10305	COG1566	PFAM secretion protein HlyD family protein
CH55_RS10310	COG2814	Major facilitator Superfamily
CH55_RS10315	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CH55_RS10320	COG3118	belongs to the thioredoxin family
CH55_RS10325	COG3148	PFAM DTW domain containing protein
CH55_RS10330	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CH55_RS10330	COG1042	CoA-binding domain protein
CH55_RS10330	COG0045	succinate-CoA ligase (ADP-forming) activity
CH55_RS10335	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CH55_RS10340	COG5544	Lipoprotein
CH55_RS10375	COG0542	response to heat
CH55_RS10385	COG0564	pseudouridine synthase activity
CH55_RS10390	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CH55_RS10395	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CH55_RS10410	COG0077	Prephenate dehydratase
CH55_RS10410	COG1605	Chorismate mutase
CH55_RS10425	COG1605	Chorismate mutase
CH55_RS10425	COG0077	Prephenate dehydratase
CH55_RS10430	COG0287	Prephenate dehydrogenase
CH55_RS10430	COG1605	Chorismate mutase
CH55_RS10435	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CH55_RS10440	COG3279	Response regulator of the LytR AlgR family
CH55_RS10445	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CH55_RS10450	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CH55_RS10455	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CH55_RS10460	COG3137	Salt-induced outer membrane protein
CH55_RS10495	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CH55_RS10500	COG4137	Cytochrome C assembly protein
CH55_RS10505	COG4536	flavin adenine dinucleotide binding
CH55_RS10525	COG2918	glutathione biosynthetic process
CH55_RS10530	COG1238	metal cluster binding
CH55_RS10535	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CH55_RS10560	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CH55_RS10600	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CH55_RS10605	COG3958	Transketolase
CH55_RS10610	COG3959	Transketolase, thiamine diphosphate binding domain
CH55_RS10615	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS10620	COG1129	ABC transporter
CH55_RS10630	COG1879	ABC-type sugar transport system periplasmic component
CH55_RS10640	COG3783	Cytochrome b(562)
CH55_RS10645	COG3038	cytochrome b561
CH55_RS10650	COG3381	protein complex oligomerization
CH55_RS10655	COG3302	dmso reductase anchor subunit
CH55_RS10660	COG0437	4 iron, 4 sulfur cluster binding
CH55_RS10665	COG0243	molybdopterin cofactor binding
CH55_RS10670	COG0235	Class ii aldolase
CH55_RS10675	COG1349	DNA-binding transcription factor activity
CH55_RS10690	COG1129	ABC transporter
CH55_RS10695	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS10700	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS10705	COG3623	hexulose-6-phosphate isomerase
CH55_RS10710	COG1070	Carbohydrate kinase
CH55_RS10715	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CH55_RS10715	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CH55_RS10725	COG0024	Methionine aminopeptidase
CH55_RS10740	COG4771	TonB-dependent receptor
CH55_RS10745	COG1858	cytochrome C peroxidase
CH55_RS10750	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CH55_RS10770	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CH55_RS10785	COG2376	Dihydroxyacetone kinase
CH55_RS10790	COG1028	Short-chain dehydrogenase reductase Sdr
CH55_RS10795	COG1063	alcohol dehydrogenase
CH55_RS10800	COG0698	ribose 5-phosphate isomerase
CH55_RS10815	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CH55_RS10820	COG1388	LysM domain
CH55_RS10820	COG4942	peptidase
CH55_RS10860	COG0529	Catalyzes the synthesis of activated sulfate
CH55_RS10910	COG0720	synthase
CH55_RS10915	COG0602	queuosine metabolic process
CH55_RS10935	COG3956	TIGRFAM MazG family protein
CH55_RS10945	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CH55_RS10950	COG2205	protein histidine kinase activity
CH55_RS10950	COG4999	Histidine kinase
CH55_RS10950	COG3437	response regulator, receiver
CH55_RS10950	COG3850	Histidine kinase
CH55_RS10955	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CH55_RS10975	COG2860	membrane
CH55_RS10995	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CH55_RS11000	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CH55_RS11010	COG1120	ATPase activity
CH55_RS11015	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CH55_RS11020	COG1643	Atp-dependent helicase
CH55_RS11025	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
CH55_RS11040	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CH55_RS11045	COG0617	tRNA 3'-terminal CCA addition
CH55_RS11050	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CH55_RS11075	COG0842	Transport permease protein
CH55_RS11080	COG1131	(ABC) transporter
CH55_RS11085	COG0288	reversible hydration of carbon dioxide
CH55_RS11090	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CH55_RS11095	COG2132	Multicopper oxidase
CH55_RS11125	COG1049	propionate catabolic process, 2-methylcitrate cycle
CH55_RS11140	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CH55_RS11145	COG0508	dehydrogenase complex catalyzes the overall conversion of
CH55_RS11150	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CH55_RS11155	COG2186	Transcriptional regulator
CH55_RS11160	COG1113	amino acid transport
CH55_RS11170	COG3023	N-Acetylmuramoyl-L-alanine amidase
CH55_RS11180	COG4969	Belongs to the N-Me-Phe pilin family
CH55_RS11185	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CH55_RS11190	COG1459	type II secretion system
CH55_RS11245	COG0582	viral genome integration into host DNA
CH55_RS11255	COG0795	lipopolysaccharide-transporting ATPase activity
CH55_RS11260	COG0795	lipopolysaccharide-transporting ATPase activity
CH55_RS11270	COG2927	DNA polymerase III (CHI subunit)
CH55_RS11275	COG0525	valine-tRNA ligase activity
CH55_RS11285	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
CH55_RS11295	COG2731	YhcH YjgK YiaL family protein
CH55_RS11305	COG0601	transmembrane transport
CH55_RS11310	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CH55_RS11315	COG0444	Belongs to the ABC transporter superfamily
CH55_RS11320	COG4608	Belongs to the ABC transporter superfamily
CH55_RS11335	COG2188	Transcriptional regulator
CH55_RS11340	COG3624	Phosphonate C-P lyase system protein PhnG
CH55_RS11350	COG3626	phosphonate metabolism
CH55_RS11355	COG3627	carbon phosphorus lyase activity
CH55_RS11360	COG4107	phosphonate C-P lyase system protein PhnK
CH55_RS11365	COG4778	phosphonate C-P lyase system protein PhnL
CH55_RS11370	COG3454	Phosphonate metabolism
CH55_RS11375	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
CH55_RS11380	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CH55_RS11385	COG0702	epimerase
CH55_RS11400	COG3842	ATPase activity
CH55_RS11405	COG0395	ABC-type sugar transport system, permease component
CH55_RS11410	COG1175	transmembrane transport
CH55_RS11415	COG1653	transport
CH55_RS11435	COG3153	acetyltransferase
CH55_RS11440	COG3154	lipid carrier protein
CH55_RS11450	COG0826	peptidase U32
CH55_RS11455	COG0826	peptidase U32
CH55_RS11465	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CH55_RS11495	COG0513	Belongs to the DEAD box helicase family
CH55_RS11510	COG2801	Transposase and inactivated derivatives
CH55_RS11525	COG3710	Transcriptional regulator
CH55_RS11545	COG1256	bacterial-type flagellum assembly
CH55_RS11555	COG1706	bacterial-type flagellum-dependent cell motility
CH55_RS11565	COG4786	Flagellar basal body rod
CH55_RS11570	COG4787	bacterial-type flagellum-dependent cell motility
CH55_RS11575	COG1749	Flagellar hook protein flgE
CH55_RS11580	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CH55_RS11585	COG1558	bacterial-type flagellum-dependent cell motility
CH55_RS11590	COG1815	bacterial-type flagellum-dependent cell motility
CH55_RS11595	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
CH55_RS11635	COG1677	Flagellar hook-basal body complex protein FliE
CH55_RS11660	COG1987	bacterial-type flagellum assembly
CH55_RS11665	COG1684	flagellar biosynthetic protein fliR
CH55_RS11670	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CH55_RS11690	COG4592	Periplasmic binding protein
CH55_RS11725	COG4964	Belongs to the GSP D family
CH55_RS11730	COG4964	Belongs to the GSP D family
CH55_RS11780	COG0848	biopolymer transport protein
CH55_RS11785	COG0811	peptide transport
CH55_RS11790	COG0626	cystathionine gamma-synthase activity
CH55_RS11795	COG0586	Pfam SNARE associated Golgi protein
CH55_RS11800	COG2207	Transcriptional regulator
CH55_RS11805	COG1979	alcohol dehydrogenase
CH55_RS11815	COG0656	L-ascorbic acid biosynthetic process
CH55_RS11825	COG2132	Multicopper oxidase
CH55_RS11835	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CH55_RS11845	COG2249	NAD(P)H dehydrogenase (quinone) activity
CH55_RS11850	COG0583	DNA-binding transcription factor activity
CH55_RS11860	COG3150	esterase
CH55_RS11865	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CH55_RS11870	COG3151	Protein conserved in bacteria
CH55_RS11875	COG0494	nUDIX hydrolase
CH55_RS11880	COG1538	Outer membrane efflux protein
CH55_RS11895	COG0754	glutathionylspermidine amidase activity
CH55_RS11900	COG3384	dioxygenase
CH55_RS11920	COG0531	amino acid
CH55_RS11935	COG3025	triphosphatase activity
CH55_RS11940	COG4991	sh3 domain protein
CH55_RS11955	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CH55_RS11970	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CH55_RS11975	COG0358	DNA primase activity
CH55_RS12060	COG0251	oxidation-reduction process
CH55_RS12080	COG0436	Aminotransferase
CH55_RS12105	COG1289	transmembrane transporter activity
CH55_RS12125	COG0395	ABC-type sugar transport system, permease component
CH55_RS12135	COG2182	Extracellular solute-binding protein
CH55_RS12140	COG1609	Transcriptional regulator
CH55_RS12145	COG3459	Glycosyltransferase 36 associated
CH55_RS12150	COG3842	ATPase activity
CH55_RS12170	COG3210	domain, Protein
CH55_RS12175	COG3210	domain, Protein
CH55_RS12205	COG2831	hemolysin activation secretion protein
CH55_RS12210	COG4245	von Willebrand factor, type A
CH55_RS12225	COG4245	von Willebrand factor, type A
CH55_RS12245	COG3247	response to pH
CH55_RS12250	COG0446	pyridine nucleotide-disulphide oxidoreductase
CH55_RS12250	COG1902	pentaerythritol trinitrate reductase activity
CH55_RS12265	COG1451	nucleotide metabolic process
CH55_RS12270	COG0673	inositol 2-dehydrogenase activity
CH55_RS12330	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CH55_RS12335	COG0564	pseudouridine synthase activity
CH55_RS12440	COG0417	DNA replication proofreading
CH55_RS12445	COG0586	Pfam SNARE associated Golgi protein
CH55_RS12450	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
CH55_RS12455	COG1178	ABC-type Fe3 transport system permease component
CH55_RS12460	COG4143	(ABC) transporter
CH55_RS12480	COG2814	Major facilitator Superfamily
CH55_RS12495	COG0473	3-isopropylmalate dehydrogenase activity
CH55_RS12525	COG1022	Amp-dependent synthetase and ligase
CH55_RS12535	COG0028	Belongs to the TPP enzyme family
CH55_RS12555	COG1609	Transcriptional regulator
CH55_RS12575	COG3116	cell division
CH55_RS12580	COG0768	penicillin binding
CH55_RS12585	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CH55_RS12590	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CH55_RS12605	COG0772	Belongs to the SEDS family
CH55_RS12625	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CH55_RS12630	COG0849	cell division
CH55_RS12635	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CH55_RS12660	COG0494	nUDIX hydrolase
CH55_RS12675	COG0435	Glutathione S-transferase
CH55_RS12680	COG2259	Doxx family
CH55_RS12690	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
CH55_RS12695	COG4575	ribosome binding
CH55_RS12715	COG0586	Pfam SNARE associated Golgi protein
CH55_RS12730	COG2271	Major facilitator Superfamily
CH55_RS12750	COG2721	sulfolactate sulfo-lyase activity
CH55_RS12770	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CH55_RS12780	COG2966	Psort location CytoplasmicMembrane, score
CH55_RS12785	COG1280	lysine exporter protein (LysE YggA)
CH55_RS12790	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CH55_RS12825	COG1047	Peptidyl-prolyl cis-trans
CH55_RS12840	COG0196	riboflavin kinase activity
CH55_RS12855	COG0583	DNA-binding transcription factor activity
CH55_RS12875	COG1584	GPR1 FUN34 yaaH family protein
CH55_RS12890	COG0521	Mo-molybdopterin cofactor biosynthetic process
CH55_RS12920	COG0745	RESPONSE REGULATOR receiver
CH55_RS12925	COG3045	CreA protein
CH55_RS12930	COG2207	Transcriptional regulator
CH55_RS12930	COG3708	Transcriptional regulator
CH55_RS12945	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
CH55_RS12950	COG0741	lytic transglycosylase activity
CH55_RS12965	COG2199	diguanylate cyclase activity
CH55_RS12970	COG2885	chlorophyll binding
CH55_RS12995	COG0560	Phosphoserine phosphatase
CH55_RS13000	COG3726	membrane protein affecting hemolysin expression
CH55_RS13030	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CH55_RS13050	COG2823	Periplasmic or secreted lipoprotein
CH55_RS13060	COG0456	acetyltransferase
CH55_RS13065	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
CH55_RS13110	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CH55_RS13115	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CH55_RS13135	COG0859	PFAM glycosyl transferase family 9
CH55_RS13140	COG1070	Carbohydrate kinase
CH55_RS13190	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CH55_RS13190	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CH55_RS13190	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CH55_RS13195	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CH55_RS13200	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CH55_RS13205	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CH55_RS13210	COG2207	Transcriptional regulator
CH55_RS13220	COG4269	membrane
CH55_RS13275	COG2963	transposase activity
CH55_RS13290	COG1401	restriction endodeoxyribonuclease activity
CH55_RS13320	COG1011	Hydrolase
CH55_RS13335	COG0174	glutamine synthetase
CH55_RS13340	COG3852	Histidine kinase
CH55_RS13350	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CH55_RS13385	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CH55_RS13385	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CH55_RS13390	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CH55_RS13395	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CH55_RS13400	COG3084	Protein conserved in bacteria
CH55_RS13410	COG1763	Mo-molybdopterin cofactor biosynthetic process
CH55_RS13415	COG3328	transposase activity
CH55_RS13460	COG0435	Glutathione S-transferase
CH55_RS13465	COG0583	DNA-binding transcription factor activity
CH55_RS13470	COG1741	Belongs to the pirin family
CH55_RS13475	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CH55_RS13495	COG2823	Periplasmic or secreted lipoprotein
CH55_RS13505	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
CH55_RS13515	COG0784	Response regulator, receiver
CH55_RS13515	COG2198	Histidine kinase
CH55_RS13515	COG5002	protein histidine kinase activity
CH55_RS13525	COG1242	4 iron, 4 sulfur cluster binding
CH55_RS13530	COG0070	glutamate synthase
CH55_RS13530	COG0069	glutamate synthase activity
CH55_RS13530	COG0067	glutamate synthase
CH55_RS13545	COG2969	positive regulation of protein catabolic process
CH55_RS13550	COG0625	glutathione transferase activity
CH55_RS13570	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CH55_RS13575	COG3105	Protein conserved in bacteria
CH55_RS13580	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CH55_RS13590	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CH55_RS13600	COG5007	Belongs to the BolA IbaG family
CH55_RS13605	COG3113	response to antibiotic
CH55_RS13610	COG2854	intermembrane phospholipid transfer
CH55_RS13615	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CH55_RS13620	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CH55_RS13625	COG1127	ABC transporter
CH55_RS13630	COG0530	calcium, potassium:sodium antiporter activity
CH55_RS13635	COG0517	IMP dehydrogenase activity
CH55_RS13635	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CH55_RS13640	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CH55_RS13645	COG3117	lipopolysaccharide transmembrane transporter activity
CH55_RS13650	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CH55_RS13655	COG1137	ATPase activity
CH55_RS13660	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CH55_RS13680	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CH55_RS13705	COG1609	Transcriptional regulator
CH55_RS13710	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CH55_RS13710	COG1263	PTS System
CH55_RS13715	COG0366	Alpha amylase catalytic
CH55_RS13720	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CH55_RS13725	COG3783	Cytochrome b(562)
CH55_RS13735	COG0312	modulator of DNA gyrase
CH55_RS13745	COG2732	(Barnase) inhibitor
CH55_RS13760	COG1012	belongs to the aldehyde dehydrogenase family
CH55_RS13780	COG0583	DNA-binding transcription factor activity
CH55_RS13840	COG0312	modulator of DNA gyrase
CH55_RS13845	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CH55_RS13850	COG3164	Protein of unknown function
CH55_RS13855	COG1530	ribonuclease E activity
CH55_RS13860	COG0424	maF-like protein
CH55_RS13865	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CH55_RS13870	COG1792	Involved in formation and maintenance of cell shape
CH55_RS13875	COG1077	Cell shape determining protein MreB Mrl
CH55_RS13880	COG2200	EAL domain
CH55_RS13880	COG2199	diguanylate cyclase activity
CH55_RS13885	COG0604	alcohol dehydrogenase
CH55_RS13890	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CH55_RS13905	COG0511	ligase activity, forming carbon-carbon bonds
CH55_RS13910	COG0439	Biotin carboxylase
CH55_RS13915	COG3924	membrane
CH55_RS13920	COG4145	pantothenate transmembrane transporter activity
CH55_RS13930	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CH55_RS13935	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
CH55_RS13960	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CH55_RS13970	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CH55_RS13975	COG3133	Outer membrane lipoprotein
CH55_RS13985	COG1278	Cold shock
CH55_RS13990	COG1278	Cold shock
CH55_RS14015	COG0625	glutathione transferase activity
CH55_RS14025	COG1069	ribulokinase activity
CH55_RS14035	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS14040	COG1129	ABC transporter
CH55_RS14050	COG1560	Kdo2-lipid A biosynthetic process
CH55_RS14060	COG0025	NhaP-type Na H and K H
CH55_RS14065	COG2252	PERMEase
CH55_RS14070	COG3077	Addiction module antitoxin, RelB DinJ family
CH55_RS14080	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CH55_RS14090	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CH55_RS14095	COG0431	NADPH-dependent FMN reductase
CH55_RS14100	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
CH55_RS14105	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CH55_RS14110	COG1869	D-ribose catabolic process
CH55_RS14115	COG2207	Transcriptional regulator
CH55_RS14115	COG1917	Cupin 2, conserved barrel domain protein
CH55_RS14120	COG0673	inositol 2-dehydrogenase activity
CH55_RS14135	COG3209	COG3209 Rhs family protein
CH55_RS14145	COG3501	Rhs element vgr protein
CH55_RS14190	COG3501	Rhs element vgr protein
CH55_RS14265	COG2801	Transposase and inactivated derivatives
CH55_RS14285	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CH55_RS14290	COG0058	SHG alpha-glucan phosphorylase activity
CH55_RS14315	COG3275	phosphorelay sensor kinase activity
CH55_RS14345	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CH55_RS14350	COG2095	MarC family integral membrane protein
CH55_RS14370	COG3265	gluconokinase activity
CH55_RS14375	COG2610	gluconate transmembrane transporter activity
CH55_RS14380	COG1609	Transcriptional regulator
CH55_RS14385	COG1741	Belongs to the pirin family
CH55_RS14405	COG0191	fructose-bisphosphate aldolase activity
CH55_RS14420	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS14435	COG2081	HI0933 family
CH55_RS14440	COG0306	phosphate transporter
CH55_RS14460	COG0589	response to stress
CH55_RS14480	COG0339	signal peptide processing
CH55_RS14485	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CH55_RS14490	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CH55_RS14495	COG3835	regulator
CH55_RS14500	COG2610	gluconate transmembrane transporter activity
CH55_RS14505	COG1929	Belongs to the glycerate kinase type-1 family
CH55_RS14530	COG1295	ribonuclease BN
CH55_RS14535	COG2134	cdp-diacylglycerol pyrophosphatase
CH55_RS14545	COG2200	EAL domain
CH55_RS14550	COG1942	4-Oxalocrotonate Tautomerase
CH55_RS14555	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CH55_RS14560	COG0612	Peptidase, M16
CH55_RS14580	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CH55_RS14585	COG2199	diguanylate cyclase activity
CH55_RS14585	COG2200	EAL domain
CH55_RS14590	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
CH55_RS14595	COG4608	Belongs to the ABC transporter superfamily
CH55_RS14600	COG0444	Belongs to the ABC transporter superfamily
CH55_RS14605	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CH55_RS14610	COG0601	transmembrane transport
CH55_RS14615	COG0747	negative chemotaxis
CH55_RS14625	COG2831	hemolysin activation secretion protein
CH55_RS14650	COG2271	Major facilitator Superfamily
CH55_RS14655	COG3851	Histidine kinase
CH55_RS14660	COG2197	response regulator
CH55_RS14665	COG2194	sulfuric ester hydrolase activity
CH55_RS14685	COG2986	histidine ammonia-lyase
CH55_RS14715	COG4607	ABC-type enterochelin transport system periplasmic component
CH55_RS14725	COG4605	iron ion homeostasis
CH55_RS14730	COG4604	ABC transporter, ATP-binding protein
CH55_RS14770	COG0582	viral genome integration into host DNA
CH55_RS14775	COG2207	Transcriptional regulator
CH55_RS14775	COG1609	Transcriptional regulator
CH55_RS14780	COG4214	carbohydrate transport
CH55_RS14790	COG4213	ABC transporter substrate-binding protein
CH55_RS14800	COG1070	Carbohydrate kinase
CH55_RS14810	COG3121	Chaperone
CH55_RS14830	COG3274	enterobacterial common antigen metabolic process
CH55_RS14845	COG2801	Transposase and inactivated derivatives
CH55_RS14880	COG3276	selenocysteine insertion sequence binding
CH55_RS14885	COG3276	selenocysteine insertion sequence binding
CH55_RS14900	COG2864	formate dehydrogenase
CH55_RS14905	COG0437	4 iron, 4 sulfur cluster binding
CH55_RS14910	COG0243	molybdopterin cofactor binding
CH55_RS14910	COG3383	formate dehydrogenase (NAD+) activity
CH55_RS14915	COG0243	molybdopterin cofactor binding
CH55_RS14915	COG3383	formate dehydrogenase (NAD+) activity
CH55_RS14925	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CH55_RS14950	COG3722	fumarate hydratase activity
CH55_RS14960	COG2213	PTS system mannitol-specific
CH55_RS14960	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CH55_RS14980	COG2818	Glycosylase
CH55_RS14990	COG2885	chlorophyll binding
CH55_RS15005	COG0366	Alpha amylase catalytic
CH55_RS15015	COG3977	Valine--pyruvate aminotransferase
CH55_RS15035	COG5645	(Lipo)protein
CH55_RS15040	COG0823	Involved in the tonB-independent uptake of proteins
CH55_RS15045	COG0823	Involved in the tonB-independent uptake of proteins
CH55_RS15050	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CH55_RS15055	COG2423	ornithine cyclodeaminase activity
CH55_RS15065	COG2801	Transposase and inactivated derivatives
CH55_RS15070	COG0561	phosphatase activity
CH55_RS15075	COG0187	DNA topoisomerase II activity
CH55_RS15090	COG0592	DNA-directed DNA polymerase activity
CH55_RS15100	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CH55_RS15110	COG0706	membrane insertase activity
CH55_RS15135	COG2252	PERMEase
CH55_RS15140	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CH55_RS15145	COG0765	amino acid transport
CH55_RS15150	COG0765	amino acid transport
CH55_RS15155	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CH55_RS15165	COG0704	Plays a role in the regulation of phosphate uptake
CH55_RS15175	COG0581	inorganic phosphate transmembrane transporter activity
CH55_RS15180	COG0573	inorganic phosphate transmembrane transporter activity
CH55_RS15185	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CH55_RS15240	COG3312	ion transport
CH55_RS15255	COG0716	FMN binding
CH55_RS15260	COG1522	sequence-specific DNA binding
CH55_RS15290	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CH55_RS15300	COG0477	Major facilitator Superfamily
CH55_RS15305	COG2186	Transcriptional regulator
CH55_RS15355	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CH55_RS15360	COG2224	Isocitrate lyase
CH55_RS15370	COG1414	Transcriptional regulator
CH55_RS15375	COG1414	Transcriptional regulator
CH55_RS15395	COG0527	aspartate kinase activity
CH55_RS15410	COG3833	ABC-type maltose transport systems, permease component
CH55_RS15415	COG1175	transmembrane transport
CH55_RS15495	COG2801	Transposase and inactivated derivatives
CH55_RS15505	COG1349	DNA-binding transcription factor activity
CH55_RS15525	COG0058	SHG alpha-glucan phosphorylase activity
CH55_RS15530	COG0058	SHG alpha-glucan phosphorylase activity
CH55_RS15535	COG1640	4-alpha-glucanotransferase
CH55_RS15570	COG1918	ferrous iron import across plasma membrane
CH55_RS15580	COG2183	response to ionizing radiation
CH55_RS15585	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CH55_RS15610	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CH55_RS15615	COG1011	Hydrolase
CH55_RS15630	COG0494	nUDIX hydrolase
CH55_RS15635	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CH55_RS15665	COG4796	Type ii and iii secretion system protein
CH55_RS15690	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CH55_RS15695	COG0546	phosphoglycolate phosphatase activity
CH55_RS15700	COG0180	Tryptophanyl-tRNA synthetase
CH55_RS15720	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CH55_RS15725	COG0402	S-adenosylhomocysteine deaminase activity
CH55_RS15745	COG1486	melibiose metabolic process
CH55_RS15750	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CH55_RS15755	COG0433	COG0433 Predicted ATPase
CH55_RS15770	COG1289	transmembrane transporter activity
CH55_RS15780	COG1765	OsmC-like protein
CH55_RS15790	COG3954	Phosphoribulokinase
CH55_RS15800	COG0429	hydrolase of the alpha beta-hydrolase fold
CH55_RS15810	COG4521	taurine ABC transporter
CH55_RS15820	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CH55_RS15825	COG2175	clavaminate synthase activity
CH55_RS15835	COG1216	Glycosyl transferase, family 2
CH55_RS15855	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
CH55_RS15860	COG1047	Peptidyl-prolyl cis-trans
CH55_RS15870	COG0545	Peptidyl-prolyl cis-trans isomerase
CH55_RS15875	COG2964	Protein conserved in bacteria
CH55_RS15895	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CH55_RS15900	COG0049	tRNA binding
CH55_RS15930	COG0051	transcription antitermination factor activity, RNA binding
CH55_RS15945	COG0089	rRNA binding
CH55_RS15955	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CH55_RS15965	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CH55_RS15970	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CH55_RS15980	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CH55_RS15985	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CH55_RS16025	COG1841	ribosomal large subunit assembly
CH55_RS16035	COG0201	protein transport
CH55_RS16040	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CH55_RS16055	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CH55_RS16070	COG0789	Transcriptional regulator
CH55_RS16075	COG3036	rescue of stalled ribosome
CH55_RS16105	COG0758	DNA mediated transformation
CH55_RS16115	COG0551	DNA topoisomerase type I activity
CH55_RS16130	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CH55_RS16155	COG0456	acetyltransferase
CH55_RS16160	COG2982	Protein involved in outer membrane biogenesis
CH55_RS16165	COG2233	PERMEase
CH55_RS16170	COG0786	glutamate:sodium symporter activity
CH55_RS16175	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CH55_RS16180	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CH55_RS16185	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CH55_RS16205	COG2860	membrane
CH55_RS16210	COG1561	YicC-like family, N-terminal region
CH55_RS16235	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CH55_RS16270	COG1519	Transferase
CH55_RS16275	COG0859	PFAM glycosyl transferase family 9
CH55_RS16280	COG0859	PFAM glycosyl transferase family 9
CH55_RS16290	COG0156	8-amino-7-oxononanoate synthase activity
CH55_RS16305	COG4942	peptidase
CH55_RS16315	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CH55_RS16320	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CH55_RS16340	COG1045	serine acetyltransferase
CH55_RS16345	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CH55_RS16350	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CH55_RS16350	COG2169	Transcriptional regulator
CH55_RS16355	COG2205	protein histidine kinase activity
CH55_RS16360	COG0745	RESPONSE REGULATOR receiver
CH55_RS16365	COG3678	ATP-independent chaperone mediated protein folding
CH55_RS16385	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CH55_RS16395	COG0471	metal ion transport
CH55_RS16400	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CH55_RS16405	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CH55_RS16410	COG0583	DNA-binding transcription factor activity
CH55_RS16425	COG3152	Membrane
CH55_RS16435	COG1494	fructose-1,6-bisphosphatase
CH55_RS16440	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CH55_RS16445	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CH55_RS16495	COG1575	Belongs to the MenA family. Type 1 subfamily
CH55_RS16510	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CH55_RS16515	COG1609	Transcriptional regulator
CH55_RS16525	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CH55_RS16535	COG4682	membrane
CH55_RS16555	COG0527	aspartate kinase activity
CH55_RS16555	COG0460	homoserine dehydrogenase
CH55_RS16565	COG2801	Transposase and inactivated derivatives
CH55_RS16585	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CH55_RS16630	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CH55_RS16635	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CH55_RS16635	COG0678	peroxiredoxin activity
CH55_RS16715	COG1879	ABC-type sugar transport system periplasmic component
CH55_RS16720	COG1129	ABC transporter
CH55_RS16725	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS16730	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS16740	COG3085	chromosome segregation
CH55_RS16755	COG3978	acetolactate synthase activity
CH55_RS16760	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CH55_RS16800	COG0583	DNA-binding transcription factor activity
CH55_RS16840	COG3121	Chaperone
CH55_RS16855	COG3121	Chaperone
CH55_RS16870	COG3328	transposase activity
CH55_RS16880	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CH55_RS16910	COG3118	belongs to the thioredoxin family
CH55_RS16915	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CH55_RS16920	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CH55_RS16925	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
CH55_RS16930	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CH55_RS16935	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CH55_RS16940	COG1088	dTDP-glucose 4,6-dehydratase activity
CH55_RS16945	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CH55_RS16950	COG0456	acetyltransferase
CH55_RS16955	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CH55_RS16960	COG2244	polysaccharide biosynthetic process
CH55_RS16980	COG1113	amino acid transport
CH55_RS17010	COG3071	HemY protein
CH55_RS17015	COG2959	enzyme of heme biosynthesis
CH55_RS17020	COG1587	Uroporphyrinogen-III synthase
CH55_RS17035	COG3072	Adenylate cyclase
CH55_RS17055	COG3159	Protein conserved in bacteria
CH55_RS17060	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CH55_RS17065	COG1011	Hydrolase
CH55_RS17070	COG0210	DNA helicase
CH55_RS17080	COG5441	Belongs to the UPF0261 family
CH55_RS17085	COG5564	TIM-barrel signal transduction protein
CH55_RS17100	COG2050	protein possibly involved in aromatic compounds catabolism
CH55_RS17110	COG0514	ATP-dependent DNA helicase (RecQ)
CH55_RS17115	COG1280	lysine exporter protein (LysE YggA)
CH55_RS17120	COG1280	lysine exporter protein (LysE YggA)
CH55_RS17125	COG2267	carboxylic ester hydrolase activity
CH55_RS17130	COG0561	phosphatase activity
CH55_RS17140	COG0584	glycerophosphoryl diester phosphodiesterase
CH55_RS17150	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CH55_RS17160	COG0247	lactate metabolic process
CH55_RS17170	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CH55_RS17185	COG3714	YhhN family
CH55_RS17200	COG3776	membrane
CH55_RS17205	COG0742	ribosomal rna small subunit methyltransferase
CH55_RS17215	COG0552	protein localization to endoplasmic reticulum
CH55_RS17215	COG0552	protein localization to endoplasmic reticulum
CH55_RS17220	COG2884	Cell division ATP-binding protein ftsE
CH55_RS17225	COG2177	Part of the ABC transporter FtsEX involved in
CH55_RS17250	COG0683	leucine binding
CH55_RS17260	COG4177	L-phenylalanine transmembrane transporter activity
CH55_RS17270	COG0410	ABC transporter
CH55_RS17330	COG0584	glycerophosphoryl diester phosphodiesterase
CH55_RS17335	COG0679	Auxin Efflux Carrier
CH55_RS17340	COG0697	spore germination
CH55_RS17345	COG0583	DNA-binding transcription factor activity
CH55_RS17355	COG0412	Dienelactone hydrolase
CH55_RS17370	COG1966	Carbon starvation protein
CH55_RS17375	COG0586	Pfam SNARE associated Golgi protein
CH55_RS17380	COG1322	Protein conserved in bacteria
CH55_RS17400	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CH55_RS17410	COG0805	protein transport
CH55_RS17445	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CH55_RS17470	COG1739	Uncharacterized protein family UPF0029
CH55_RS17480	COG1739	Uncharacterized protein family UPF0029
CH55_RS17485	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CH55_RS17490	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
CH55_RS17520	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CH55_RS17585	COG0250	Participates in transcription elongation, termination and antitermination
CH55_RS17650	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CH55_RS17690	COG1515	deoxyribonuclease V activity
CH55_RS17710	COG0151	Belongs to the GarS family
CH55_RS17750	COG2801	Transposase and inactivated derivatives
CH55_RS17775	COG4771	TonB-dependent receptor
CH55_RS17780	COG2195	Cleaves the N-terminal amino acid of tripeptides
CH55_RS17785	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
CH55_RS17825	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CH55_RS17840	COG2801	Transposase and inactivated derivatives
CH55_RS17870	COG0195	Participates in both transcription termination and antitermination
CH55_RS17890	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CH55_RS17900	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CH55_RS17915	COG1534	Rna-binding protein
CH55_RS17925	COG2027	D-alanyl-D-alanine carboxypeptidase
CH55_RS17930	COG0745	RESPONSE REGULATOR receiver
CH55_RS17935	COG0642	Histidine kinase
CH55_RS17945	COG0697	spore germination
CH55_RS17960	COG0142	geranyltranstransferase activity
CH55_RS17970	COG3423	Transcriptional regulator
CH55_RS17995	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CH55_RS18000	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CH55_RS18005	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CH55_RS18010	COG2105	PFAM AIG2 family protein
CH55_RS18020	COG0729	surface antigen
CH55_RS18030	COG1253	flavin adenine dinucleotide binding
CH55_RS18040	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
CH55_RS18050	COG0737	Belongs to the 5'-nucleotidase family
CH55_RS18060	COG0545	Peptidyl-prolyl cis-trans isomerase
CH55_RS18065	COG3061	Opacity-associated protein A
CH55_RS18090	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CH55_RS18100	COG0360	Binds together with S18 to 16S ribosomal RNA
CH55_RS18110	COG1073	alpha beta
CH55_RS18125	COG3650	response to hydrogen peroxide
CH55_RS18130	COG1960	acyl-CoA dehydrogenase activity
CH55_RS18135	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CH55_RS18140	COG0557	exoribonuclease II activity
CH55_RS18155	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
CH55_RS18160	COG0330	HflC and HflK could
CH55_RS18165	COG0330	HflC and HflK could
CH55_RS18170	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CH55_RS18190	COG0860	N-Acetylmuramoyl-L-alanine amidase
CH55_RS18195	COG0802	atpase or kinase
CH55_RS18200	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CH55_RS18200	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CH55_RS18205	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CH55_RS18225	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
CH55_RS18245	COG1511	domain protein
CH55_RS18245	COG3264	Mechanosensitive ion channel
CH55_RS18260	COG1053	succinate dehydrogenase
CH55_RS18265	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CH55_RS18275	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
CH55_RS18320	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CH55_RS18335	COG3383	formate dehydrogenase (NAD+) activity
CH55_RS18340	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CH55_RS18345	COG0493	'glutamate synthase
CH55_RS18345	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CH55_RS18350	COG1309	transcriptional regulator
CH55_RS18420	COG1454	alcohol dehydrogenase
CH55_RS18430	COG0629	single-stranded DNA binding
CH55_RS18435	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CH55_RS18440	COG2315	Protein conserved in bacteria
CH55_RS18445	COG1448	Aminotransferase
CH55_RS18470	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CH55_RS18475	COG0735	belongs to the Fur family
CH55_RS18485	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CH55_RS18530	COG3121	Chaperone
CH55_RS18590	COG1358	cellular component organization or biogenesis
CH55_RS18615	COG3721	Heme iron utilization protein
CH55_RS18620	COG0702	epimerase
CH55_RS18625	COG4771	TonB-dependent receptor
CH55_RS18630	COG3720	iron ion transport
CH55_RS18635	COG4558	Periplasmic binding protein
CH55_RS18640	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CH55_RS18650	COG0626	cystathionine gamma-synthase activity
CH55_RS18655	COG0814	amino acid
CH55_RS18660	COG0583	DNA-binding transcription factor activity
CH55_RS18665	COG0425	Belongs to the sulfur carrier protein TusA family
CH55_RS18670	COG2391	methyltransferase activity
CH55_RS18780	COG1301	dicarboxylic acid transport
CH55_RS18790	COG3162	membrane
CH55_RS18815	COG2226	methyltransferase
CH55_RS18815	COG3433	isochorismatase activity
CH55_RS18815	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CH55_RS18855	COG2375	cellular response to nickel ion
CH55_RS18855	COG1132	(ABC) transporter
CH55_RS18860	COG1132	(ABC) transporter
CH55_RS18875	COG2610	gluconate transmembrane transporter activity
CH55_RS18895	COG3501	Rhs element vgr protein
CH55_RS18920	COG0471	metal ion transport
CH55_RS18935	COG2801	Transposase and inactivated derivatives
CH55_RS18945	COG2211	Major facilitator Superfamily
CH55_RS18995	COG2771	luxR family
CH55_RS19000	COG3916	Acyl-homoserine-lactone synthase
CH55_RS19135	COG1982	Orn Lys Arg decarboxylase major
CH55_RS19140	COG1879	ABC-type sugar transport system periplasmic component
CH55_RS19145	COG1129	ABC transporter
CH55_RS19150	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS19155	COG4774	siderophore transport
CH55_RS19175	COG1194	a g-specific adenine glycosylase
CH55_RS19185	COG3171	Protein conserved in bacteria
CH55_RS19205	COG1073	alpha beta
CH55_RS19205	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
CH55_RS19205	COG3064	Membrane
CH55_RS19210	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CH55_RS19215	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CH55_RS19225	COG0762	integral membrane protein
CH55_RS19230	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CH55_RS19235	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CH55_RS19240	COG2805	Type II/IV secretion system protein
CH55_RS19250	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CH55_RS19265	COG0189	ligase activity
CH55_RS19270	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CH55_RS19275	COG2356	endonuclease I
CH55_RS19290	COG1166	arginine decarboxylase activity
CH55_RS19300	COG0501	Belongs to the peptidase M48B family
CH55_RS19305	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CH55_RS19325	COG0191	fructose-bisphosphate aldolase activity
CH55_RS19360	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CH55_RS19365	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CH55_RS19380	COG0006	proline dipeptidase activity
CH55_RS19385	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CH55_RS19390	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CH55_RS19420	COG5295	Hep Hag repeat protein
CH55_RS19430	COG1272	protein, Hemolysin III
CH55_RS19455	COG0745	RESPONSE REGULATOR receiver
CH55_RS19460	COG2205	protein histidine kinase activity
CH55_RS19465	COG4452	Inner membrane protein CreD
CH55_RS19470	COG0716	FMN binding
CH55_RS19475	COG4974	Belongs to the 'phage' integrase family
CH55_RS19480	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CH55_RS19485	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CH55_RS19505	COG0582	viral genome integration into host DNA
CH55_RS19535	COG2944	sequence-specific DNA binding
CH55_RS19630	COG1695	Transcriptional regulator
CH55_RS19635	COG0791	NLP P60 protein
CH55_RS19645	COG1879	ABC-type sugar transport system periplasmic component
CH55_RS19650	COG1172	Belongs to the binding-protein-dependent transport system permease family
CH55_RS19655	COG1129	ABC transporter
CH55_RS19665	COG2182	Extracellular solute-binding protein
CH55_RS19670	COG1175	transmembrane transport
CH55_RS19675	COG3833	ABC-type maltose transport systems, permease component
CH55_RS19685	COG1874	Beta-galactosidase
CH55_RS19690	COG1263	PTS System
CH55_RS19690	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CH55_RS19710	COG2271	Major facilitator Superfamily
CH55_RS19740	COG3119	arylsulfatase activity
CH55_RS19745	COG0641	radical SAM
CH55_RS19765	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CH55_RS19770	COG3716	PTS system mannose fructose sorbose family IID component
CH55_RS19775	COG3715	PTS system
CH55_RS19780	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CH55_RS19785	COG2222	sugar isomerase
CH55_RS19795	COG1349	DNA-binding transcription factor activity
CH55_RS19800	COG3119	arylsulfatase activity
CH55_RS19845	COG0288	reversible hydration of carbon dioxide
CH55_RS19865	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CH55_RS19950	COG0583	DNA-binding transcription factor activity
CH55_RS19955	COG2814	Major facilitator Superfamily
CH55_RS19960	COG0583	DNA-binding transcription factor activity
CH55_RS19970	COG1609	Transcriptional regulator
CH55_RS20005	COG0667	Aldo Keto reductase
CH55_RS20070	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CH55_RS20080	COG1074	ATP-dependent DNA helicase activity
CH55_RS20085	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CH55_RS20095	COG0860	N-Acetylmuramoyl-L-alanine amidase
CH55_RS20110	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CH55_RS20115	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CH55_RS20120	COG2166	iron-sulfur cluster assembly
CH55_RS20125	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CH55_RS20130	COG0583	DNA-binding transcription factor activity
CH55_RS20135	COG2363	Small membrane protein
CH55_RS20150	COG1611	Belongs to the LOG family
CH55_RS20170	COG3098	single-species biofilm formation
CH55_RS20175	COG0564	pseudouridine synthase activity
CH55_RS20240	COG0575	Belongs to the CDS family
CH55_RS20245	COG0750	zinc metalloprotease
CH55_RS20260	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CH55_RS20285	COG0587	DNA-directed DNA polymerase activity
CH55_RS20295	COG0346	lactoylglutathione lyase activity
CH55_RS20300	COG0037	tRNA processing
CH55_RS20310	COG4568	rho-dependent transcription termination
CH55_RS20320	COG4681	YaeQ
CH55_RS20330	COG3015	lipoprotein NlpE involved in copper resistance
CH55_RS20340	COG1720	tRNA m6t6A37 methyltransferase activity
CH55_RS20350	COG1464	Belongs to the NlpA lipoprotein family
CH55_RS20355	COG2011	ABC-type metal ion transport system permease component
CH55_RS20365	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CH55_RS20400	COG0656	L-ascorbic acid biosynthetic process
CH55_RS20415	COG0741	lytic transglycosylase activity
CH55_RS20415	COG1388	LysM domain
CH55_RS20420	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CH55_RS20425	COG2226	methyltransferase
CH55_RS20445	COG1953	Uracil, thiamine, allantoin
CH55_RS20475	COG3657	addiction module killer protein
CH55_RS20535	COG0582	viral genome integration into host DNA
CH55_RS20555	COG2867	negative regulation of translational initiation
CH55_RS20565	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CH55_RS20570	COG0497	DNA recombination
CH55_RS20575	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CH55_RS20590	COG2009	succinate dehydrogenase
CH55_RS20595	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CH55_RS20600	COG1053	succinate dehydrogenase
CH55_RS20610	COG0567	Dehydrogenase, E1 component
CH55_RS20615	COG0508	dehydrogenase complex catalyzes the overall conversion of
CH55_RS20625	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CH55_RS20630	COG1271	oxidase subunit
CH55_RS20635	COG1294	oxidase, subunit
CH55_RS20640	COG4890	Cyd operon protein YbgT
CH55_RS20645	COG3790	cyd operon protein YbgE
CH55_RS20650	COG0824	Thioesterase
CH55_RS20655	COG0811	peptide transport
CH55_RS20660	COG0848	biopolymer transport protein
CH55_RS20665	COG3064	Membrane
CH55_RS20665	COG3064	Membrane
CH55_RS20675	COG2885	chlorophyll binding
CH55_RS20680	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
CH55_RS20710	COG1230	cation diffusion facilitator family transporter
CH55_RS20715	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CH55_RS20730	COG2017	converts alpha-aldose to the beta-anomer
CH55_RS20745	COG1085	galactose-1-phosphate uridylyltransferase
CH55_RS20750	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CH55_RS20765	COG1119	ATPase activity
CH55_RS20770	COG2005	Transcriptional regulator
CH55_RS20770	COG3585	molybdate ion transport
CH55_RS20780	COG0725	ABC transporter, periplasmic molybdate-binding protein
CH55_RS20785	COG4149	molybdate abc transporter
CH55_RS20795	COG0561	phosphatase activity
CH55_RS20820	COG2226	methyltransferase
CH55_RS20830	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CH55_RS20840	COG4628	conserved protein (DUF2132)
CH55_RS20845	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CH55_RS20855	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CH55_RS20865	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CH55_RS20870	COG0314	molybdopterin synthase activity
CH55_RS20875	COG0670	Belongs to the BI1 family
CH55_RS20905	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CH55_RS20910	COG0583	DNA-binding transcription factor activity
CH55_RS20920	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
CH55_RS20925	COG2211	Major facilitator Superfamily
CH55_RS20935	COG2211	Major facilitator Superfamily
CH55_RS20955	COG1902	pentaerythritol trinitrate reductase activity
CH55_RS20975	COG0842	Transport permease protein
CH55_RS20980	COG0842	Transport permease protein
CH55_RS20985	COG1131	(ABC) transporter
CH55_RS20995	COG1309	transcriptional regulator
CH55_RS21000	COG0513	Belongs to the DEAD box helicase family
CH55_RS21050	COG0351	phosphomethylpyrimidine kinase
CH55_RS21070	COG0826	peptidase U32
CH55_RS21075	COG3422	double-strand break repair
CH55_RS21080	COG0745	RESPONSE REGULATOR receiver
CH55_RS21085	COG2205	protein histidine kinase activity
CH55_RS21090	COG2205	protein histidine kinase activity
CH55_RS21115	COG3842	ATPase activity
CH55_RS21125	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CH55_RS21135	COG1176	ABC-type spermidine putrescine transport system, permease component I
CH55_RS21140	COG1177	transmembrane transport
CH55_RS21145	COG0443	Heat shock 70 kDa protein
CH55_RS21165	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CH55_RS21175	COG0581	inorganic phosphate transmembrane transporter activity
CH55_RS21195	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CH55_RS21200	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CH55_RS21225	COG1393	Belongs to the ArsC family
CH55_RS21230	COG4783	chaperone-mediated protein folding
CH55_RS21235	COG0628	permease
CH55_RS21255	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CH55_RS21260	COG2716	regulation of RNA biosynthetic process
CH55_RS21270	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CH55_RS21310	COG1876	peptidase activity
CH55_RS21320	COG1393	Belongs to the ArsC family
CH55_RS21335	COG1175	transmembrane transport
CH55_RS21340	COG3842	ATPase activity
CH55_RS21345	COG3119	arylsulfatase activity
CH55_RS21350	COG0641	radical SAM
CH55_RS21355	COG1988	membrane-bound metal-dependent
CH55_RS21375	COG2197	response regulator
CH55_RS21380	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
CH55_RS21380	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CH55_RS21385	COG3062	negative regulation of establishment of protein localization
CH55_RS21395	COG3043	anaerobic respiration
CH55_RS21400	COG3005	denitrification pathway
CH55_RS21455	COG2837	iron assimilation
CH55_RS21460	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CH55_RS21470	COG4886	Leucine-rich repeat (LRR) protein
CH55_RS21480	COG2731	YhcH YjgK YiaL family protein
CH55_RS21490	COG1737	Transcriptional regulator
CH55_RS21500	COG4150	thiosulfate binding
CH55_RS21505	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CH55_RS21510	COG4208	sulfate ABC transporter
CH55_RS21515	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CH55_RS21530	COG0745	RESPONSE REGULATOR receiver
CH55_RS21535	COG5002	protein histidine kinase activity
CH55_RS21535	COG3850	Histidine kinase
CH55_RS21545	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CH55_RS21565	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CH55_RS21580	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CH55_RS21585	COG0745	RESPONSE REGULATOR receiver
CH55_RS21590	COG2205	protein histidine kinase activity
CH55_RS21630	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CH55_RS21640	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
CH55_RS21655	COG3530	Putative quorum-sensing-regulated virulence factor
CH55_RS21705	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CH55_RS21720	COG0667	Aldo Keto reductase
CH55_RS21745	COG0436	Aminotransferase
CH55_RS21750	COG3038	cytochrome b561
CH55_RS21780	COG3381	protein complex oligomerization
CH55_RS21785	COG3302	dmso reductase anchor subunit
CH55_RS21790	COG0437	4 iron, 4 sulfur cluster binding
CH55_RS21795	COG0243	molybdopterin cofactor binding
CH55_RS21830	COG2951	lytic endotransglycosylase activity
CH55_RS21890	COG3121	Chaperone
CH55_RS21895	COG3188	usher protein
CH55_RS21900	COG3328	transposase activity
CH55_RS21905	COG3328	transposase activity
CH55_RS21910	COG3188	usher protein
CH55_RS22005	COG2824	Alkylphosphonate utilization operon protein PhnA
CH55_RS22015	COG1704	LemA family
CH55_RS22035	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CH55_RS22040	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CH55_RS22045	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CH55_RS22055	COG1138	Cytochrome C-type biogenesis protein